Query 028279
Match_columns 211
No_of_seqs 111 out of 721
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 14:45:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.8 2.3E-08 8E-13 78.9 9.4 102 55-170 43-146 (174)
2 1xo8_A AT1G01470; structural g 98.7 1.6E-08 5.3E-13 78.2 5.2 102 55-170 20-123 (151)
3 3but_A Uncharacterized protein 98.4 3.9E-06 1.3E-10 63.5 11.2 89 84-177 18-108 (136)
4 3hd7_B Syntaxin-1A; membrane p 75.7 0.49 1.7E-05 33.8 -0.3 13 18-30 77-89 (109)
5 3me0_B PAPG protein; immunoglo 46.2 42 0.0014 24.4 5.3 86 52-138 9-105 (128)
6 3p5s_A CD38 molecule; cyclic A 39.6 6.2 0.00021 32.8 0.0 15 25-39 8-22 (278)
7 3j1r_A Archaeal adhesion filam 33.9 12 0.00041 19.4 0.6 13 38-50 11-23 (26)
8 2l6w_A Beta-type platelet-deri 34.1 12 0.00043 21.4 0.0 13 48-60 27-39 (39)
9 3qde_A Cellobiose phosphorylas 26.3 1.4E+02 0.0048 28.2 7.0 33 88-124 766-798 (811)
10 2kj1_A BM2 protein; cytoplasmi 25.5 16 0.00055 23.9 0.2 14 85-98 9-22 (89)
11 2rdd_B UPF0092 membrane protei 22.5 11 0.00038 21.2 -0.9 10 46-55 15-24 (37)
12 3vmt_A Monofunctional glycosyl 20.4 43 0.0015 27.4 1.9 17 18-34 28-44 (263)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.80 E-value=2.3e-08 Score=78.89 Aligned_cols=102 Identities=15% Similarity=0.223 Sum_probs=81.1
Q ss_pred CCCeEEEEEEEEeeeecccCCCCcceeEeEEEEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEcCC-CcccCCceEE
Q 028279 55 KQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDP-GLIPARGSAV 133 (211)
Q Consensus 55 ~~P~~~v~s~~v~~f~~~~~~p~~~~~ln~~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~-f~q~~~~t~~ 133 (211)
+.|++++.++++.+++.. ..+|.+.++++|||.+.+.+...+.++.-+|..++++..+. +..++++++.
T Consensus 43 ~~PeV~v~~v~~~~~~l~----------~~~~~l~LrV~NPN~~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~ 112 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRD----------GVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTV 112 (174)
T ss_dssp CCCEEEEEEEEEEEECSS----------SEEEEEEEEEEECSSSCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEE
T ss_pred CCCEEEEEEeEEeccccc----------eEEEEEEEEEECCCCCCccccceEEEEEECCEEEEEEecCCCceECCCCcEE
Confidence 679999999999877653 14568899999999999999999999999999999999985 8999999999
Q ss_pred EeeEEEEeecccccchHHHHhhhc-CCeEEEEEEEEEE
Q 028279 134 LPSRLTLQVDEVASNLSALIRDVL-DGELVMETHTRIP 170 (211)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~l~~d~~-~g~v~l~~~~~v~ 170 (211)
+.+++++....+ ..+++|+. .+.++.++++++.
T Consensus 113 v~Vpv~v~~~~l----~~~~~~l~~~~~i~Y~L~g~L~ 146 (174)
T 1yyc_A 113 LDVPVKVAYSIA----VSLMKDMCTDWDIDYQLDIGLT 146 (174)
T ss_dssp EEEEEEESHHHH----HHTCCCCCSSEEECEEEEEEEE
T ss_pred EEEEEEEEHHHH----HHHHHhcCCCCccceEEEEEEE
Confidence 999988764332 33444553 4577777665544
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.69 E-value=1.6e-08 Score=78.22 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=80.2
Q ss_pred CCCeEEEEEEEEeeeecccCCCCcceeEeEEEEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEcC-CCcccCCceEE
Q 028279 55 KQPITELQSAKIDGIAPRVTFPAVDIQLNLTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDID-PGLIPARGSAV 133 (211)
Q Consensus 55 ~~P~~~v~s~~v~~f~~~~~~p~~~~~ln~~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p-~f~q~~~~t~~ 133 (211)
+.|++++.++++.+++.. ..+|.+.++++|||-+.+.+.+.+.++.-+|.+++++..+ ++..++++++.
T Consensus 20 ~~P~v~v~~v~~~~~~~~----------~~~~~~~l~V~NPN~~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~ 89 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRD----------SVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTA 89 (151)
T ss_dssp CSCCCBCSEEEECCCTTT----------EECEEEEEEEECSSSSCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEE
T ss_pred CCCEEEEEEeEEeccCcc----------eeEEEEEEEEECCCCCCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEE
Confidence 579999999998766442 2356889999999999999999999999999999999987 58999999999
Q ss_pred EeeEEEEeecccccchHHHHhhhc-CCeEEEEEEEEEE
Q 028279 134 LPSRLTLQVDEVASNLSALIRDVL-DGELVMETHTRIP 170 (211)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~l~~d~~-~g~v~l~~~~~v~ 170 (211)
+.+++++....+ .++++++. .+.++.++++++.
T Consensus 90 v~vpv~v~~~~l----~~~~~~l~~~~~i~Y~l~g~l~ 123 (151)
T 1xo8_A 90 LDIPVVVPYSIL----FNLARDVGVDWDIDYELQIGLT 123 (151)
T ss_dssp EEECCCEEHHHH----HHHHHHHHHHSEEEEEEEEEEE
T ss_pred EEEEEEEEHHHH----HHHHHhcccCCcccEEEEEEEE
Confidence 998887764333 34445543 4688877665554
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.39 E-value=3.9e-06 Score=63.53 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=66.3
Q ss_pred EEEEEEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEc-CCCcccCCceEEEeeEEEEeecccccchHHHHhhhcCC-eE
Q 028279 84 LTLDLQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDI-DPGLIPARGSAVLPSRLTLQVDEVASNLSALIRDVLDG-EL 161 (211)
Q Consensus 84 ~~~~~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~-p~f~q~~~~t~~~~~~~~~~~~~~~~~~~~l~~d~~~g-~v 161 (211)
..|.+.++++|||.+.+.+...+.+++.+|.++|++.. ..+..++++++.+.+++.++..++... +.+-+.+| .-
T Consensus 18 t~~~~~l~V~NPN~~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~---~~~hi~nge~s 94 (136)
T 3but_A 18 TEIVALAKVRNEDVVPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREW---WVTHIANGEKT 94 (136)
T ss_dssp EEEEEEEEEECCSSSCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTH---HHHHHHTTSEE
T ss_pred EEEEEEEEEeCCCCcceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHH---HHHHhhcCCce
Confidence 35788999999999999999999999999999999984 579999999999999988886665433 44444444 22
Q ss_pred EEEEEEEEEEEEEEee
Q 028279 162 VMETHTRIPGRVNLLG 177 (211)
Q Consensus 162 ~l~~~~~v~~rv~v~~ 177 (211)
+++ +++.+++.+.+
T Consensus 95 ~l~--i~~~~~l~v~g 108 (136)
T 3but_A 95 KIR--VAIKPTIEIGG 108 (136)
T ss_dssp EEE--EEEEEEEECC-
T ss_pred EEE--EEEEEEEEeCC
Confidence 233 33444555543
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=75.68 E-value=0.49 Score=33.84 Aligned_cols=13 Identities=15% Similarity=-0.003 Sum_probs=5.7
Q ss_pred hcccCCcceeeeh
Q 028279 18 LRRRRRRCCLIAT 30 (211)
Q Consensus 18 ~~~~~~r~c~~c~ 30 (211)
+.+++.|++.+||
T Consensus 77 ~yqk~~rkk~~i~ 89 (109)
T 3hd7_B 77 KYQSKARRKKIMI 89 (109)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhccCcceeh
Confidence 3444444444433
No 5
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=46.17 E-value=42 Score=24.42 Aligned_cols=86 Identities=13% Similarity=0.212 Sum_probs=42.8
Q ss_pred eeeCCCeEEEEEEEEeeeecccCCCCcceeEeEE--EEEEEEE-EC--C-----CeeeEEEcC-cEEEEEECCEEeeeeE
Q 028279 52 FKTKQPITELQSAKIDGIAPRVTFPAVDIQLNLT--LDLQILV-KN--R-----NRASFKHGS-GKSLLLYRGKQVGVVD 120 (211)
Q Consensus 52 ~rP~~P~~~v~s~~v~~f~~~~~~p~~~~~ln~~--~~~~v~v-~N--P-----N~~~i~y~~-~~~~v~Y~g~~lg~~~ 120 (211)
+||..|.+.++-=.++.=.......+.+.+++++ .++.+.+ .| | ..+.+-..+ ....++-+|+..++..
T Consensus 9 ~~~~~~~l~IdHG~ls~~~a~Gnt~~~~isV~Ct~p~~Vki~lt~~~~p~~~~~~~f~V~L~ngl~S~l~lNG~~~~e~~ 88 (128)
T 3me0_B 9 CRPSAQSLEIKHGDLSINSANNHYAAQTLSVSCDVPANIRFMLLRNTTPTYSHGKKFSVGLGHGWDSIVSVNGVDTGETT 88 (128)
T ss_dssp EEECCSCCEEECCCSSSSCCSSCEEEEEEEEEESSCEEEEEEEEECSCCSSCCTTSCEEEEETTEEEEEEETTBCSSEEE
T ss_pred cCCCCCceecccceechhhcCCCEEeeEEEEEeCCCceEEEEEecCCcccccccCceEEecCCCeEEEEEECCeecccee
Confidence 6899998888754443222211000011122211 2223333 32 1 233444444 6677888999888888
Q ss_pred cCCCcccCCceEEEeeEE
Q 028279 121 IDPGLIPARGSAVLPSRL 138 (211)
Q Consensus 121 ~p~f~q~~~~t~~~~~~~ 138 (211)
+ .|+..+..+-.+...+
T Consensus 89 ~-~~~~~~s~tvtV~S~L 105 (128)
T 3me0_B 89 M-RWYKAGTQNLTIGSRL 105 (128)
T ss_dssp E-EESSSEEEEEEEEEEE
T ss_pred E-EEEecCCcEEEEEEEE
Confidence 8 4444444454454444
No 6
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=39.55 E-value=6.2 Score=32.77 Aligned_cols=15 Identities=20% Similarity=0.178 Sum_probs=0.0
Q ss_pred ceeeehhhHHHHHHH
Q 028279 25 CCLIATGVAILLLLA 39 (211)
Q Consensus 25 ~c~~c~~~~~~~lv~ 39 (211)
++.+|+|.++.++++
T Consensus 8 ~~~~~l~~~~~~l~~ 22 (278)
T 3p5s_A 8 RKKLCWCVLLFFLVA 22 (278)
T ss_dssp ---------------
T ss_pred ceEEeehHHHHHHHH
Confidence 334556555444333
No 7
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=33.95 E-value=12 Score=19.38 Aligned_cols=13 Identities=15% Similarity=0.232 Sum_probs=5.5
Q ss_pred HHHHHHHHhheeE
Q 028279 38 LAFFIIILILALT 50 (211)
Q Consensus 38 v~l~~v~~~~~~l 50 (211)
+++++++.++.|+
T Consensus 11 Iviav~aaVllyl 23 (26)
T 3j1r_A 11 ILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 8
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=34.08 E-value=12 Score=21.44 Aligned_cols=13 Identities=31% Similarity=0.368 Sum_probs=8.7
Q ss_pred eeEEeeeCCCeEE
Q 028279 48 ALTVFKTKQPITE 60 (211)
Q Consensus 48 ~~lv~rP~~P~~~ 60 (211)
+..+.|-+.|+|+
T Consensus 27 iLi~~w~qKPrYe 39 (39)
T 2l6w_A 27 ILIMLWQKKPRYE 39 (39)
Confidence 3466677888874
No 9
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=26.32 E-value=1.4e+02 Score=28.22 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=22.1
Q ss_pred EEEEEECCCeeeEEEcCcEEEEEECCEEeeeeEcCCC
Q 028279 88 LQILVKNRNRASFKHGSGKSLLLYRGKQVGVVDIDPG 124 (211)
Q Consensus 88 ~~v~v~NPN~~~i~y~~~~~~v~Y~g~~lg~~~~p~f 124 (211)
+.|+++||+... +....+.-+|+.+....+|-.
T Consensus 766 ~~I~v~~~~~~~----~~~~~~~~dg~~~~~~~i~~~ 798 (811)
T 3qde_A 766 YEITVKNPNHVS----KGVAKITVDGNEISGNILPVF 798 (811)
T ss_dssp EEEEEECTTCCS----BCEEEEEETTEECSSSBCCCC
T ss_pred EEEEEEccCCCC----CCcEEEEECCEECcCCeeeec
Confidence 367888998532 224567779999876667643
No 10
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=25.50 E-value=16 Score=23.91 Aligned_cols=14 Identities=21% Similarity=0.508 Sum_probs=4.0
Q ss_pred EEEEEEEEECCCee
Q 028279 85 TLDLQILVKNRNRA 98 (211)
Q Consensus 85 ~~~~~v~v~NPN~~ 98 (211)
..++.++++|||+-
T Consensus 9 gv~lki~ir~pnke 22 (89)
T 2kj1_A 9 GVNMKIRIKGPNKE 22 (89)
T ss_dssp ---------CCCHH
T ss_pred cCceEEEecCCCHH
Confidence 34678899999964
No 11
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=22.49 E-value=11 Score=21.21 Aligned_cols=10 Identities=10% Similarity=0.487 Sum_probs=6.4
Q ss_pred hheeEEeeeC
Q 028279 46 ILALTVFKTK 55 (211)
Q Consensus 46 ~~~~lv~rP~ 55 (211)
+.+++..||+
T Consensus 15 ifYFl~iRPQ 24 (37)
T 2rdd_B 15 IFYFMILRPQ 24 (37)
T ss_dssp HHHHHTHHHH
T ss_pred HHHHHHhhhH
Confidence 3456777885
No 12
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=20.39 E-value=43 Score=27.44 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=4.4
Q ss_pred hcccCCcceeeehhhHH
Q 028279 18 LRRRRRRCCLIATGVAI 34 (211)
Q Consensus 18 ~~~~~~r~c~~c~~~~~ 34 (211)
+|+++.++..+++++.+
T Consensus 28 ~kk~~~~~~~~~~~~~~ 44 (263)
T 3vmt_A 28 PKKKKSKRILLKILLTI 44 (263)
T ss_dssp -------CCTTHHHHHH
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 33444445444444333
Done!