BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028280
MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQ
LALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSH
NDISSSFNCRVLAIKQPAASPQLRTQTSAATTPDRSSNLDFSLSQIEIDRLEVPDIPPPK
IPYRICPNPSAIIWRSRKSRRKGSSRREAHL

High Scoring Gene Products

Symbol, full name Information P value
AT1G48960 protein from Arabidopsis thaliana 3.4e-45

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028280
        (211 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2028516 - symbol:AT1G48960 "AT1G48960" species...   475  3.4e-45   1


>TAIR|locus:2028516 [details] [associations]
            symbol:AT1G48960 "AT1G48960" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0002238 "response to molecule
            of fungal origin" evidence=RCA] InterPro:IPR006016 Pfam:PF00582
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006950 GO:GO:0016787
            Gene3D:3.40.50.620 InterPro:IPR014729 UniGene:At.49959
            EMBL:BT025283 EMBL:AK176636 IPI:IPI00540368 RefSeq:NP_564536.1
            UniGene:At.43566 ProteinModelPortal:Q67Y32 PRIDE:Q67Y32
            EnsemblPlants:AT1G48960.1 GeneID:841318 KEGG:ath:AT1G48960
            TAIR:At1g48960 eggNOG:NOG237551 HOGENOM:HOG000090952
            InParanoid:Q67Y32 OMA:LSFKDIC PhylomeDB:Q67Y32
            ProtClustDB:CLSN2688584 Genevestigator:Q67Y32 Uniprot:Q67Y32
        Length = 219

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 102/190 (53%), Positives = 130/190 (68%)

Query:    15 AARAALLWALQNLLRFGDVVTLLHVF-PXXXXXXXXXXXXXXXXGYQLALSFKDICNDFF 73
             AAR AL WAL NLLR GDV+ LLHV+ P                GY LALSF++IC+ FF
Sbjct:    16 AARTALQWALHNLLRQGDVIVLLHVYSPPPRKKKSTAARLLRRHGYNLALSFREICDSFF 75

Query:    74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLA 133
             NTN EIIV EGD +G  IA +V+EIGAS L+VGLH  SFL++ A+S  D++ +FNC+V+A
Sbjct:    76 NTNTEIIVREGDDDGRMIAQVVKEIGASMLLVGLHQNSFLYRWAISGIDVARNFNCKVMA 135

Query:   134 IKQPAA--SPQLRTQ---TSAAT---TPDRSSNLDFSLSQIEIDRLEVPDIPPP-KIPYR 184
             IKQP+   SP ++ +   TS AT   T D  +N DFS  QIEI  L+VP+IP P K+PYR
Sbjct:   136 IKQPSPELSPPVKVKGHKTSKATATATSDCLTNFDFS--QIEISGLQVPEIPTPTKVPYR 193

Query:   185 ICPNPSAIIW 194
             +CP+P AI+W
Sbjct:   194 LCPSPHAILW 203


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.136   0.405    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      211       169   0.00082  108 3  11 22  0.49    31
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  147 KB (2089 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.38u 0.14s 19.52t   Elapsed:  00:00:01
  Total cpu time:  19.38u 0.14s 19.52t   Elapsed:  00:00:01
  Start:  Mon May 20 15:29:17 2013   End:  Mon May 20 15:29:18 2013

Back to top