BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028280
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36
PE=2 SV=2
Length = 435
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 4 KKIVVIVEDVD-AARAALLWALQNLLRFGDVVTLLHVFPSLNSR--NRKKLRLLRL---K 57
+KI V V + D ++++L+WA+QN G ++HV + + +KLRL R K
Sbjct: 34 EKIYVAVTEKDLESKSSLVWAIQN--SGGKEFCIVHVHQPIPGEMFHEQKLRLYRKEKDK 91
Query: 58 GYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVG 106
++ + + IC EII E D I L+ + G + LV+G
Sbjct: 92 AHKNSEKYLQICRQ-MQVTAEIIYIETDSVEKGILQLISQRGVTKLVMG 139
>sp|Q6FFR5|DADA_ACIAD D-amino acid dehydrogenase small subunit OS=Acinetobacter sp.
(strain ADP1) GN=dadA PE=3 SV=1
Length = 419
Score = 38.5 bits (88), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 61 LALSFKDICNDF-FNTNVEIIVTEGDQ-EGARIAALVREIGASALVVGLHDRSFLHKLAM 118
LA K++ +F FN NVE +V EGD+ +G R+ V + L G + R FL LA+
Sbjct: 207 LAQKAKELGVNFQFNQNVEGLVVEGDEIKGVRVNGQVLKADRYVLAFGSYSRDFLKPLAL 266
Query: 119 SHNDISSSFNCRVLAIKQPAASPQ 142
+ + I QP +PQ
Sbjct: 267 NLPVYPVKGYSLTIPIVQPEFAPQ 290
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana
GN=PUB55 PE=3 SV=1
Length = 568
Score = 37.0 bits (84), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 7 VVIVEDVDAARAALLWALQNLLRFGDVVTLLHVF-PSLNSRNRKKLRLLRLKGYQLALSF 65
V + DV +R+ LLWAL+NL V +LHV+ P S +KL L Y+ +
Sbjct: 14 VAVKSDVRESRSTLLWALRNL--GAKKVCILHVYQPKTASPAARKLEELEAIMYETLHDY 71
Query: 66 KDIC-------NDFFNTNVEI-IVTEGDQEGARIAALVREIGASALVVG 106
D C +D + + +E+ V +G I L+ E LV+G
Sbjct: 72 FDFCQQEGVNEDDIYISCIEMNDVKQG------ILELIHESKIKKLVMG 114
>sp|B0V6N4|DADA_ACIBY D-amino acid dehydrogenase small subunit OS=Acinetobacter baumannii
(strain AYE) GN=dadA PE=3 SV=1
Length = 421
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 61 LALSFKDICNDF-FNTNVEIIVTEGDQ-EGARIAALVREIGASALVVGLHDRSFLHKLAM 118
LA K++ +F FN NVE ++ EGDQ +G ++ V L G + R FL L +
Sbjct: 207 LAQIAKELGVNFQFNQNVEKLIVEGDQIKGVQVNGKVLTADRYVLAFGSYSRDFLKPLDL 266
Query: 119 SHNDISSSFNCRVLAIKQPAASPQ 142
+ I PA +PQ
Sbjct: 267 QLPVYPVKGYSLTIPIVDPAFAPQ 290
>sp|B7I1Q9|DADA_ACIB5 D-amino acid dehydrogenase small subunit OS=Acinetobacter baumannii
(strain AB0057) GN=dadA PE=3 SV=1
Length = 421
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 61 LALSFKDICNDF-FNTNVEIIVTEGDQ-EGARIAALVREIGASALVVGLHDRSFLHKLAM 118
LA K++ +F FN NVE ++ EGDQ +G ++ V L G + R FL L +
Sbjct: 207 LAQIAKELGVNFQFNQNVEKLIVEGDQIKGVQVNGKVLTADRYVLAFGSYSRDFLKPLDL 266
Query: 119 SHNDISSSFNCRVLAIKQPAASPQ 142
+ I PA +PQ
Sbjct: 267 QLPVYPVKGYSLTIPIVDPAFAPQ 290
>sp|B7H2E9|DADA_ACIB3 D-amino acid dehydrogenase small subunit OS=Acinetobacter baumannii
(strain AB307-0294) GN=dadA PE=3 SV=1
Length = 421
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 61 LALSFKDICNDF-FNTNVEIIVTEGDQ-EGARIAALVREIGASALVVGLHDRSFLHKLAM 118
LA K++ +F FN NVE ++ EGDQ +G ++ V L G + R FL L +
Sbjct: 207 LAQIAKELGVNFQFNQNVEKLIVEGDQIKGVQVNGKVLTADRYVLAFGSYSRDFLKPLDL 266
Query: 119 SHNDISSSFNCRVLAIKQPAASPQ 142
+ I PA +PQ
Sbjct: 267 QLPVYPVKGYSLTIPIVDPAFAPQ 290
>sp|B0VNF5|DADA_ACIBS D-amino acid dehydrogenase small subunit OS=Acinetobacter baumannii
(strain SDF) GN=dadA PE=3 SV=1
Length = 421
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 61 LALSFKDICNDF-FNTNVEIIVTEGDQ-EGARIAALVREIGASALVVGLHDRSFLHKLAM 118
LA K++ +F FN NVE ++ EGDQ +G ++ V L G + R FL L +
Sbjct: 207 LAQIAKELGVNFQFNQNVEKLIVEGDQIKGVQVNGKVLTADRYVLAFGSYSRDFLKPLDL 266
Query: 119 SHNDISSSFNCRVLAIKQPAASPQ 142
+ I PA +PQ
Sbjct: 267 QLPVYPVKGYSLTIPIVAPAFAPQ 290
>sp|A3M0Z0|DADA_ACIBT D-amino acid dehydrogenase small subunit OS=Acinetobacter baumannii
(strain ATCC 17978 / NCDC KC 755) GN=dadA PE=3 SV=2
Length = 421
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 61 LALSFKDICNDF-FNTNVEIIVTEGDQ-EGARIAALVREIGASALVVGLHDRSFLHKLAM 118
LA K++ +F FN NVE ++ EGDQ +G ++ + L G + R FL L +
Sbjct: 207 LAQIAKELGVNFQFNQNVEKLIVEGDQIKGVQVNGKILTADRYVLAFGSYSRDFLKPLDL 266
Query: 119 SHNDISSSFNCRVLAIKQPAASPQ 142
+ I PA +PQ
Sbjct: 267 QLPVYPVKGYSLTIPIVDPAFAPQ 290
>sp|Q4WC37|PFA4_ASPFU Palmitoyltransferase pfa4 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pfa4 PE=3
SV=2
Length = 428
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 150 ATTPDRSSNLDFSLSQIEIDRLEVPDIPPPKIP 182
A TPDRS+ L+F ++ E L P P +IP
Sbjct: 278 AATPDRSTGLEFEVNGFEDPNLSWPPPDPDRIP 310
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,484,801
Number of Sequences: 539616
Number of extensions: 2775707
Number of successful extensions: 8031
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 8027
Number of HSP's gapped (non-prelim): 18
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)