Query 028280
Match_columns 211
No_of_seqs 191 out of 1779
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 09:04:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09982 universal stress prot 99.9 1E-26 2.2E-31 175.2 14.6 133 1-136 1-139 (142)
2 PRK15118 universal stress glob 99.9 1.5E-25 3.2E-30 168.8 16.1 134 1-137 1-140 (144)
3 PRK15456 universal stress prot 99.9 2.5E-25 5.5E-30 167.3 16.7 131 2-135 1-142 (142)
4 PRK15005 universal stress prot 99.9 2.9E-25 6.3E-30 166.9 16.2 132 2-135 1-144 (144)
5 PRK10116 universal stress prot 99.9 2.6E-24 5.7E-29 161.4 15.9 135 1-137 1-140 (142)
6 cd01989 STK_N The N-terminal d 99.9 3.8E-24 8.2E-29 161.3 15.9 131 5-136 1-145 (146)
7 PF00582 Usp: Universal stress 99.9 5.8E-23 1.3E-27 151.3 16.8 133 2-135 1-140 (140)
8 PRK11175 universal stress prot 99.9 5.8E-23 1.3E-27 172.6 15.4 152 1-157 1-163 (305)
9 cd01988 Na_H_Antiporter_C The 99.9 4.9E-22 1.1E-26 146.6 16.6 129 5-135 1-132 (132)
10 cd01987 USP_OKCHK USP domain i 99.9 1.3E-20 2.8E-25 138.1 12.9 121 5-135 1-124 (124)
11 PRK11175 universal stress prot 99.8 1.7E-19 3.7E-24 151.5 15.0 132 3-136 152-300 (305)
12 cd00293 USP_Like Usp: Universa 99.8 4.4E-18 9.6E-23 123.8 16.2 128 5-134 1-130 (130)
13 COG0589 UspA Universal stress 99.8 9.7E-18 2.1E-22 126.1 16.6 135 1-137 3-153 (154)
14 PRK12652 putative monovalent c 99.7 1.5E-15 3.2E-20 129.9 14.9 130 1-133 3-148 (357)
15 PRK10490 sensor protein KdpD; 99.2 3.4E-10 7.4E-15 108.0 14.7 124 4-137 251-375 (895)
16 COG2205 KdpD Osmosensitive K+ 98.9 3E-08 6.5E-13 91.2 13.0 126 4-139 249-377 (890)
17 cd01984 AANH_like Adenine nucl 98.6 2.4E-07 5.2E-12 63.3 7.7 82 6-133 1-85 (86)
18 PLN03159 cation/H(+) antiporte 97.4 0.002 4.3E-08 61.6 12.2 131 5-135 460-614 (832)
19 PLN03159 cation/H(+) antiporte 97.2 0.015 3.2E-07 55.7 15.4 39 4-42 631-669 (832)
20 TIGR02432 lysidine_TilS_N tRNA 96.9 0.033 7.2E-07 43.4 12.1 98 5-114 1-114 (189)
21 PF01171 ATP_bind_3: PP-loop f 96.5 0.12 2.6E-06 40.2 12.6 99 5-115 1-112 (182)
22 cd01992 PP-ATPase N-terminal d 96.2 0.14 2.9E-06 39.6 11.6 98 5-114 1-111 (185)
23 PRK12342 hypothetical protein; 95.4 0.2 4.3E-06 41.3 9.7 101 12-132 33-140 (254)
24 PRK03359 putative electron tra 95.0 0.45 9.8E-06 39.3 10.9 102 12-132 34-143 (256)
25 COG2086 FixA Electron transfer 94.3 1.1 2.3E-05 37.1 11.5 101 11-132 34-142 (260)
26 cd01993 Alpha_ANH_like_II This 94.3 1.2 2.5E-05 34.2 11.3 98 5-114 1-121 (185)
27 PF01012 ETF: Electron transfe 93.9 1.1 2.4E-05 33.9 10.3 106 5-132 1-118 (164)
28 PRK10696 tRNA 2-thiocytidine b 93.4 2.7 5.9E-05 34.5 12.4 96 4-114 30-146 (258)
29 COG0037 MesJ tRNA(Ile)-lysidin 92.7 2.2 4.7E-05 35.5 11.1 98 4-115 22-136 (298)
30 TIGR00591 phr2 photolyase PhrI 92.2 1.7 3.7E-05 38.8 10.3 91 11-108 32-122 (454)
31 PRK13820 argininosuccinate syn 89.9 8.1 0.00018 34.0 12.0 91 2-110 1-120 (394)
32 PF00875 DNA_photolyase: DNA p 89.6 1.1 2.4E-05 34.0 5.8 114 17-138 14-127 (165)
33 TIGR00268 conserved hypothetic 89.5 5.6 0.00012 32.6 10.3 91 3-111 12-119 (252)
34 PF00448 SRP54: SRP54-type pro 87.1 13 0.00028 29.2 10.9 92 6-115 5-99 (196)
35 PRK07313 phosphopantothenoylcy 86.2 3 6.5E-05 32.6 6.4 114 3-136 1-121 (182)
36 PRK05253 sulfate adenylyltrans 86.2 12 0.00026 31.7 10.4 95 3-111 27-139 (301)
37 PLN00200 argininosuccinate syn 85.4 26 0.00055 31.0 12.7 38 2-42 4-41 (404)
38 PRK10660 tilS tRNA(Ile)-lysidi 84.5 13 0.00028 33.2 10.3 65 4-80 16-81 (436)
39 cd01990 Alpha_ANH_like_I This 83.4 19 0.00042 28.0 10.4 92 6-114 1-110 (202)
40 PRK05579 bifunctional phosphop 83.0 6.7 0.00015 34.6 7.8 114 1-136 4-124 (399)
41 TIGR03556 photolyase_8HDF deox 82.8 12 0.00026 33.7 9.5 90 12-109 11-100 (471)
42 cd01986 Alpha_ANH_like Adenine 82.5 13 0.00029 25.6 8.3 77 6-115 1-77 (103)
43 TIGR02765 crypto_DASH cryptoch 81.7 19 0.00041 31.8 10.3 116 11-134 10-131 (429)
44 TIGR02113 coaC_strep phosphopa 80.6 12 0.00025 29.1 7.6 113 4-136 1-120 (177)
45 KOG1650 Predicted K+/H+-antipo 80.4 9.6 0.00021 36.6 8.3 101 5-110 616-723 (769)
46 PRK13982 bifunctional SbtC-lik 79.3 8.8 0.00019 34.6 7.3 112 3-136 70-188 (475)
47 TIGR01162 purE phosphoribosyla 78.9 22 0.00047 27.1 8.3 66 65-137 17-85 (156)
48 cd01985 ETF The electron trans 78.2 28 0.00061 26.6 12.8 103 5-132 1-119 (181)
49 PRK00109 Holliday junction res 77.7 5.6 0.00012 29.5 4.8 52 87-138 42-99 (138)
50 PF02844 GARS_N: Phosphoribosy 77.7 2.4 5.3E-05 29.8 2.7 22 87-108 50-71 (100)
51 TIGR02852 spore_dpaB dipicolin 76.9 13 0.00029 29.1 6.9 113 4-136 1-124 (187)
52 cd01994 Alpha_ANH_like_IV This 75.9 26 0.00057 27.5 8.5 94 5-111 1-100 (194)
53 COG0041 PurE Phosphoribosylcar 75.0 28 0.0006 26.5 7.8 65 66-137 22-89 (162)
54 cd01995 ExsB ExsB is a transcr 74.9 33 0.00072 25.8 10.5 86 5-111 1-88 (169)
55 TIGR00342 thiazole biosynthesi 74.4 51 0.0011 28.7 10.6 35 4-42 173-207 (371)
56 PF02601 Exonuc_VII_L: Exonucl 73.8 22 0.00048 30.0 8.1 64 72-137 39-116 (319)
57 PRK08227 autoinducer 2 aldolas 73.2 51 0.0011 27.4 9.8 102 19-138 95-202 (264)
58 PF00731 AIRC: AIR carboxylase 72.9 38 0.00083 25.6 8.3 66 65-137 19-87 (150)
59 COG0151 PurD Phosphoribosylami 72.1 13 0.00029 32.8 6.3 66 12-108 7-72 (428)
60 COG0452 Dfp Phosphopantothenoy 72.1 17 0.00036 32.0 7.0 114 2-136 3-121 (392)
61 cd01713 PAPS_reductase This do 71.4 38 0.00082 24.9 10.4 37 5-42 1-37 (173)
62 TIGR00884 guaA_Cterm GMP synth 71.4 63 0.0014 27.4 10.5 37 4-43 17-53 (311)
63 PRK08091 ribulose-phosphate 3- 71.0 29 0.00063 28.1 7.7 41 65-108 169-209 (228)
64 PRK08745 ribulose-phosphate 3- 70.8 29 0.00063 28.0 7.7 41 65-108 161-201 (223)
65 TIGR00032 argG argininosuccina 70.7 75 0.0016 28.0 11.3 34 5-42 1-34 (394)
66 COG0552 FtsY Signal recognitio 70.0 72 0.0016 27.5 10.8 91 6-114 143-236 (340)
67 PRK10867 signal recognition pa 69.8 83 0.0018 28.1 11.8 92 6-114 104-198 (433)
68 PRK09722 allulose-6-phosphate 69.1 44 0.00095 27.1 8.4 41 65-108 159-199 (229)
69 PRK14057 epimerase; Provisiona 69.1 38 0.00083 28.0 8.1 41 65-108 183-223 (254)
70 TIGR00521 coaBC_dfp phosphopan 69.0 35 0.00075 30.0 8.3 115 1-136 1-120 (390)
71 TIGR00250 RNAse_H_YqgF RNAse H 68.7 12 0.00027 27.4 4.7 52 87-138 36-93 (130)
72 PRK10550 tRNA-dihydrouridine s 68.5 73 0.0016 27.0 10.8 116 20-136 77-202 (312)
73 cd01997 GMP_synthase_C The C-t 67.8 63 0.0014 27.2 9.4 93 5-113 1-114 (295)
74 COG0042 tRNA-dihydrouridine sy 67.6 78 0.0017 27.0 10.5 91 18-109 79-175 (323)
75 COG1066 Sms Predicted ATP-depe 67.6 91 0.002 27.9 10.4 108 6-136 96-218 (456)
76 COG0036 Rpe Pentose-5-phosphat 67.4 38 0.00083 27.3 7.6 31 76-108 169-199 (220)
77 PRK12858 tagatose 1,6-diphosph 67.1 83 0.0018 27.1 10.8 117 16-138 104-251 (340)
78 PRK10415 tRNA-dihydrouridine s 67.0 77 0.0017 27.0 9.9 112 21-136 80-202 (321)
79 PRK13305 sgbH 3-keto-L-gulonat 66.9 65 0.0014 25.9 10.0 85 1-104 1-85 (218)
80 COG0299 PurN Folate-dependent 66.9 63 0.0014 25.7 9.9 84 4-108 1-88 (200)
81 PRK00994 F420-dependent methyl 66.4 43 0.00093 27.5 7.6 50 88-139 49-98 (277)
82 TIGR02039 CysD sulfate adenyly 66.3 80 0.0017 26.7 11.0 94 3-110 19-130 (294)
83 PRK00919 GMP synthase subunit 65.8 33 0.00072 29.1 7.4 37 4-43 22-58 (307)
84 PRK13054 lipid kinase; Reviewe 65.6 79 0.0017 26.4 10.1 36 1-36 1-36 (300)
85 PRK06029 3-octaprenyl-4-hydrox 65.6 15 0.00033 28.7 4.9 115 3-136 1-123 (185)
86 COG1927 Mtd Coenzyme F420-depe 65.5 71 0.0015 25.7 8.8 64 72-138 29-97 (277)
87 PRK06027 purU formyltetrahydro 65.3 74 0.0016 26.7 9.3 85 3-110 89-176 (286)
88 PRK00509 argininosuccinate syn 65.1 1E+02 0.0022 27.3 11.9 38 2-42 1-38 (399)
89 COG0541 Ffh Signal recognition 64.6 97 0.0021 27.8 10.1 92 6-115 104-198 (451)
90 PRK08349 hypothetical protein; 64.6 66 0.0014 25.1 8.8 34 4-41 1-34 (198)
91 PF01008 IF-2B: Initiation fac 64.6 52 0.0011 27.2 8.3 57 74-137 158-219 (282)
92 PRK09590 celB cellobiose phosp 64.5 15 0.00033 25.9 4.3 67 63-138 19-85 (104)
93 PRK00286 xseA exodeoxyribonucl 64.2 44 0.00096 29.6 8.3 56 81-138 171-234 (438)
94 PRK10674 deoxyribodipyrimidine 63.7 79 0.0017 28.5 9.8 91 11-108 11-105 (472)
95 TIGR00930 2a30 K-Cl cotranspor 62.8 1.6E+02 0.0035 29.2 12.3 124 5-138 577-711 (953)
96 TIGR00646 MG010 DNA primase-re 61.7 65 0.0014 26.0 7.9 35 3-37 154-188 (218)
97 cd08550 GlyDH-like Glycerol_de 61.7 66 0.0014 27.6 8.6 66 64-136 40-109 (349)
98 PRK13010 purU formyltetrahydro 59.9 92 0.002 26.2 8.9 84 4-110 94-180 (289)
99 PRK04148 hypothetical protein; 59.2 44 0.00095 24.8 6.1 39 74-112 77-115 (134)
100 TIGR00655 PurU formyltetrahydr 59.1 1.1E+02 0.0023 25.7 9.3 104 3-136 84-190 (280)
101 cd02067 B12-binding B12 bindin 58.8 33 0.00071 24.2 5.4 60 74-135 27-88 (119)
102 cd01714 ETF_beta The electron 58.4 89 0.0019 24.6 10.9 102 9-131 30-138 (202)
103 cd02071 MM_CoA_mut_B12_BD meth 57.8 31 0.00066 24.7 5.1 49 78-126 29-77 (122)
104 PRK02261 methylaspartate mutas 57.7 74 0.0016 23.4 8.5 48 87-134 42-91 (137)
105 cd06533 Glyco_transf_WecG_TagA 57.6 60 0.0013 24.8 7.0 63 68-134 66-130 (171)
106 PRK14665 mnmA tRNA-specific 2- 57.1 1.3E+02 0.0029 26.1 12.4 91 4-110 6-124 (360)
107 cd01712 ThiI ThiI is required 57.0 84 0.0018 23.8 12.4 35 5-43 1-35 (177)
108 cd03364 TOPRIM_DnaG_primases T 56.9 41 0.00089 21.9 5.2 33 4-36 44-76 (79)
109 TIGR00640 acid_CoA_mut_C methy 56.7 33 0.00071 25.2 5.1 48 78-125 32-79 (132)
110 PF03652 UPF0081: Uncharacteri 56.5 37 0.00079 25.1 5.4 53 87-139 39-98 (135)
111 TIGR00237 xseA exodeoxyribonuc 56.3 78 0.0017 28.2 8.3 56 81-138 165-229 (432)
112 PRK14664 tRNA-specific 2-thiou 55.7 1.4E+02 0.003 26.0 11.3 88 2-110 4-119 (362)
113 cd05565 PTS_IIB_lactose PTS_II 55.3 36 0.00078 23.8 4.9 63 63-136 18-80 (99)
114 PRK15411 rcsA colanic acid cap 55.0 1E+02 0.0022 24.2 8.3 46 88-137 36-86 (207)
115 TIGR00737 nifR3_yhdG putative 54.8 1.3E+02 0.0028 25.4 9.5 63 74-136 131-200 (319)
116 COG0434 SgcQ Predicted TIM-bar 54.6 54 0.0012 27.0 6.3 108 22-135 99-212 (263)
117 PRK08883 ribulose-phosphate 3- 54.6 90 0.0019 25.1 7.8 33 74-108 165-197 (220)
118 TIGR01425 SRP54_euk signal rec 54.3 1.6E+02 0.0035 26.3 11.4 91 7-115 105-198 (429)
119 PRK00074 guaA GMP synthase; Re 53.5 1.8E+02 0.0039 26.6 11.0 93 4-113 216-330 (511)
120 PRK06395 phosphoribosylamine-- 53.4 86 0.0019 27.9 8.1 24 2-27 1-24 (435)
121 PF07302 AroM: AroM protein; 53.2 1.1E+02 0.0023 24.8 7.8 43 88-135 164-209 (221)
122 PF13662 Toprim_4: Toprim doma 53.1 29 0.00063 22.8 4.0 33 3-35 46-78 (81)
123 COG1570 XseA Exonuclease VII, 53.1 95 0.0021 27.8 8.1 62 72-134 160-231 (440)
124 TIGR00959 ffh signal recogniti 53.0 1.7E+02 0.0037 26.1 11.8 92 6-114 103-197 (428)
125 PRK00766 hypothetical protein; 53.0 36 0.00078 26.9 5.0 59 74-134 42-104 (194)
126 PF03746 LamB_YcsF: LamB/YcsF 52.3 1.3E+02 0.0029 24.7 11.6 118 7-133 31-161 (242)
127 TIGR00524 eIF-2B_rel eIF-2B al 51.7 1.5E+02 0.0032 25.2 8.9 42 96-137 194-240 (303)
128 PF05677 DUF818: Chlamydia CHL 51.5 1.6E+02 0.0036 25.6 9.7 115 21-138 161-300 (365)
129 PF07355 GRDB: Glycine/sarcosi 51.1 26 0.00055 30.3 4.2 63 74-136 47-119 (349)
130 PRK12563 sulfate adenylyltrans 51.1 1.6E+02 0.0034 25.2 10.1 40 3-42 37-76 (312)
131 cd02072 Glm_B12_BD B12 binding 50.9 37 0.00081 24.9 4.6 37 87-123 38-74 (128)
132 PF03808 Glyco_tran_WecB: Glyc 50.7 1.1E+02 0.0024 23.3 9.1 60 70-133 70-131 (172)
133 cd08171 GlyDH-like2 Glycerol d 50.3 1.6E+02 0.0035 25.1 9.2 64 65-136 41-110 (345)
134 TIGR00696 wecB_tagA_cpsF bacte 50.1 80 0.0017 24.4 6.6 61 67-133 67-130 (177)
135 PF02310 B12-binding: B12 bind 50.1 84 0.0018 21.8 6.4 68 65-135 20-88 (121)
136 COG1184 GCD2 Translation initi 49.1 1.7E+02 0.0036 24.9 10.3 93 18-134 130-227 (301)
137 cd01998 tRNA_Me_trans tRNA met 48.5 1.8E+02 0.0038 25.1 9.7 33 5-41 1-33 (349)
138 PF02670 DXP_reductoisom: 1-de 48.4 56 0.0012 24.0 5.2 34 78-114 72-105 (129)
139 PRK08005 epimerase; Validated 48.4 62 0.0013 25.9 5.8 28 80-108 166-193 (210)
140 PF02887 PK_C: Pyruvate kinase 47.9 57 0.0012 23.0 5.2 44 87-137 4-48 (117)
141 KOG0781 Signal recognition par 47.0 2.3E+02 0.005 26.0 10.6 105 5-121 381-490 (587)
142 PHA02031 putative DnaG-like pr 46.7 83 0.0018 26.2 6.4 37 3-39 206-242 (266)
143 PRK05920 aromatic acid decarbo 46.5 52 0.0011 26.2 5.1 35 2-37 2-36 (204)
144 PRK15424 propionate catabolism 46.1 98 0.0021 28.5 7.5 65 61-137 25-92 (538)
145 cd03557 L-arabinose_isomerase 46.0 1.7E+02 0.0037 26.6 8.8 47 88-138 51-101 (484)
146 TIGR02329 propionate_PrpR prop 46.0 1.4E+02 0.0031 27.4 8.5 64 62-137 16-82 (526)
147 PRK13011 formyltetrahydrofolat 45.8 1.8E+02 0.0039 24.4 9.1 83 4-109 90-175 (286)
148 PF01207 Dus: Dihydrouridine s 45.8 1.5E+02 0.0033 25.0 8.2 115 18-134 66-189 (309)
149 PRK05703 flhF flagellar biosyn 45.6 2.2E+02 0.0048 25.3 11.2 110 7-136 226-340 (424)
150 TIGR00511 ribulose_e2b2 ribose 45.6 1.9E+02 0.004 24.5 10.1 56 74-137 166-226 (301)
151 PRK01565 thiamine biosynthesis 45.5 2.1E+02 0.0046 25.1 11.8 34 4-41 177-210 (394)
152 TIGR02766 crypt_chrom_pln cryp 45.4 2.3E+02 0.0049 25.4 10.5 113 14-135 10-123 (475)
153 PRK11889 flhF flagellar biosyn 45.3 2.3E+02 0.005 25.4 10.3 90 7-114 246-335 (436)
154 PF02441 Flavoprotein: Flavopr 44.6 37 0.00079 24.5 3.8 107 4-136 1-118 (129)
155 PRK02910 light-independent pro 43.7 2.6E+02 0.0056 25.6 10.3 39 88-137 351-389 (519)
156 cd00950 DHDPS Dihydrodipicolin 43.6 1.8E+02 0.004 23.9 9.2 49 89-137 85-135 (284)
157 COG0415 PhrB Deoxyribodipyrimi 43.5 1.9E+02 0.0041 26.2 8.6 112 11-134 11-125 (461)
158 PRK00143 mnmA tRNA-specific 2- 43.4 2.1E+02 0.0046 24.6 11.8 34 4-41 1-34 (346)
159 COG0301 ThiI Thiamine biosynth 43.2 2.3E+02 0.0051 24.9 9.1 22 22-43 190-211 (383)
160 PRK08535 translation initiatio 43.0 2.1E+02 0.0045 24.3 10.0 38 100-137 189-231 (310)
161 PF00834 Ribul_P_3_epim: Ribul 42.8 35 0.00075 27.1 3.6 40 65-107 156-195 (201)
162 cd00951 KDGDH 5-dehydro-4-deox 42.6 2E+02 0.0043 23.9 9.0 61 74-136 69-133 (289)
163 cd02070 corrinoid_protein_B12- 42.6 1.3E+02 0.0027 23.6 6.8 49 87-135 121-172 (201)
164 PRK11106 queuosine biosynthesi 42.5 1.8E+02 0.004 23.5 9.6 36 4-43 2-37 (231)
165 PRK08576 hypothetical protein; 42.1 2.6E+02 0.0056 25.1 10.6 86 5-108 236-339 (438)
166 PRK02929 L-arabinose isomerase 42.0 2E+02 0.0043 26.3 8.7 45 88-136 57-105 (499)
167 PRK08057 cobalt-precorrin-6x r 41.9 47 0.001 27.3 4.3 43 92-139 183-226 (248)
168 cd00958 DhnA Class I fructose- 41.7 1.8E+02 0.0039 23.1 9.8 100 20-135 78-186 (235)
169 TIGR00289 conserved hypothetic 41.2 1.9E+02 0.0041 23.3 9.8 92 5-109 2-95 (222)
170 cd01029 TOPRIM_primases TOPRIM 41.0 96 0.0021 19.8 5.2 32 4-35 44-75 (79)
171 TIGR01769 GGGP geranylgeranylg 40.4 73 0.0016 25.4 5.1 49 89-137 14-62 (205)
172 PLN02828 formyltetrahydrofolat 40.3 2.2E+02 0.0047 23.7 9.3 107 3-136 70-177 (268)
173 PF02568 ThiI: Thiamine biosyn 40.2 1.9E+02 0.004 22.9 7.5 35 4-42 4-38 (197)
174 PRK11070 ssDNA exonuclease Rec 39.9 2.9E+02 0.0063 25.7 9.6 36 74-110 127-162 (575)
175 PRK08194 tartrate dehydrogenas 39.7 1E+02 0.0022 26.8 6.2 79 14-107 161-239 (352)
176 PRK06801 hypothetical protein; 39.6 57 0.0012 27.4 4.6 50 87-136 30-82 (286)
177 TIGR00512 salvage_mtnA S-methy 39.4 2.5E+02 0.0054 24.2 8.9 57 74-136 206-267 (331)
178 PRK13398 3-deoxy-7-phosphohept 39.4 2.2E+02 0.0048 23.6 10.1 104 14-136 38-142 (266)
179 COG2379 GckA Putative glycerat 39.2 2.8E+02 0.006 24.6 9.4 64 75-139 248-318 (422)
180 COG1440 CelA Phosphotransferas 39.2 1.1E+02 0.0023 21.6 5.1 53 74-136 29-81 (102)
181 PRK04527 argininosuccinate syn 39.0 2.8E+02 0.006 24.6 11.9 37 2-42 1-37 (400)
182 PRK07178 pyruvate carboxylase 38.9 1.4E+02 0.003 26.8 7.2 36 2-42 1-36 (472)
183 cd05564 PTS_IIB_chitobiose_lic 38.9 1E+02 0.0022 21.1 5.1 65 63-138 17-81 (96)
184 TIGR03573 WbuX N-acetyl sugar 38.9 2.5E+02 0.0054 24.1 10.1 35 5-42 61-95 (343)
185 PRK12857 fructose-1,6-bisphosp 38.4 1.2E+02 0.0025 25.5 6.3 51 86-136 29-82 (284)
186 cd01715 ETF_alpha The electron 38.2 1.7E+02 0.0037 22.0 9.8 41 87-132 71-111 (168)
187 COG1504 Uncharacterized conser 38.1 81 0.0018 22.6 4.4 47 89-137 52-98 (121)
188 COG0069 GltB Glutamate synthas 37.8 1.3E+02 0.0028 27.3 6.7 36 73-109 302-337 (485)
189 cd04740 DHOD_1B_like Dihydroor 37.5 2.4E+02 0.0051 23.4 9.7 81 20-105 104-185 (296)
190 COG0284 PyrF Orotidine-5'-phos 37.5 2.3E+02 0.0049 23.2 7.8 33 5-42 13-45 (240)
191 TIGR01858 tag_bisphos_ald clas 37.4 57 0.0012 27.4 4.2 50 87-136 28-80 (282)
192 COG1646 Predicted phosphate-bi 37.3 72 0.0016 26.0 4.6 51 87-137 29-79 (240)
193 PRK09423 gldA glycerol dehydro 37.3 2.7E+02 0.0059 24.0 8.8 66 64-136 47-116 (366)
194 PF12683 DUF3798: Protein of u 37.3 2.1E+02 0.0045 24.0 7.3 93 5-110 4-97 (275)
195 PLN02948 phosphoribosylaminoim 37.2 2.3E+02 0.0049 26.4 8.5 66 65-137 429-497 (577)
196 PF14582 Metallophos_3: Metall 36.7 94 0.002 25.5 5.1 20 122-141 83-102 (255)
197 PLN02331 phosphoribosylglycina 36.6 2.2E+02 0.0047 22.7 9.8 84 5-109 1-88 (207)
198 cd00408 DHDPS-like Dihydrodipi 36.3 2.4E+02 0.0052 23.1 9.4 49 89-137 82-132 (281)
199 TIGR00420 trmU tRNA (5-methyla 36.2 2.9E+02 0.0062 23.9 11.3 33 4-40 1-33 (352)
200 PRK12738 kbaY tagatose-bisphos 36.1 63 0.0014 27.2 4.3 55 81-136 25-82 (286)
201 COG0420 SbcD DNA repair exonuc 36.1 79 0.0017 27.4 5.1 21 87-107 28-48 (390)
202 PF10881 DUF2726: Protein of u 36.1 1.4E+02 0.0031 21.2 5.8 53 87-139 45-112 (126)
203 TIGR01918 various_sel_PB selen 36.0 60 0.0013 28.9 4.3 62 74-135 43-114 (431)
204 TIGR01917 gly_red_sel_B glycin 35.9 61 0.0013 28.9 4.3 62 74-135 43-114 (431)
205 PF01645 Glu_synthase: Conserv 35.8 1.9E+02 0.0041 25.3 7.3 45 65-110 194-238 (368)
206 TIGR02370 pyl_corrinoid methyl 35.5 1.1E+02 0.0023 24.0 5.4 41 86-126 122-162 (197)
207 PRK08335 translation initiatio 35.2 2.7E+02 0.0058 23.3 9.8 38 100-137 178-220 (275)
208 PRK06806 fructose-bisphosphate 35.2 76 0.0016 26.6 4.6 50 87-136 30-82 (281)
209 cd01971 Nitrogenase_VnfN_like 35.1 66 0.0014 28.5 4.5 27 84-111 102-128 (427)
210 PRK10481 hypothetical protein; 35.1 2.3E+02 0.0049 23.0 7.2 64 64-135 145-213 (224)
211 PRK03170 dihydrodipicolinate s 34.7 2.6E+02 0.0057 23.1 9.4 62 75-137 71-136 (292)
212 PRK12737 gatY tagatose-bisphos 34.7 64 0.0014 27.1 4.1 50 87-136 30-82 (284)
213 PF13362 Toprim_3: Toprim doma 34.3 1.1E+02 0.0025 20.5 4.8 37 3-39 41-79 (96)
214 PRK08185 hypothetical protein; 34.2 74 0.0016 26.7 4.4 50 87-136 25-76 (283)
215 COG3640 CooC CO dehydrogenase 34.0 80 0.0017 26.0 4.4 122 3-127 1-129 (255)
216 PRK05772 translation initiatio 33.4 3.3E+02 0.0071 23.8 9.7 58 74-137 227-289 (363)
217 PF02878 PGM_PMM_I: Phosphoglu 33.3 1E+02 0.0022 22.4 4.6 40 3-42 40-79 (137)
218 PF13167 GTP-bdg_N: GTP-bindin 33.2 1.7E+02 0.0036 20.3 6.7 66 60-132 8-84 (95)
219 TIGR01501 MthylAspMutase methy 32.5 1.3E+02 0.0029 22.2 5.1 50 86-135 39-89 (134)
220 PRK11914 diacylglycerol kinase 32.5 2.5E+02 0.0054 23.4 7.5 59 74-137 39-97 (306)
221 KOG1467 Translation initiation 32.4 4E+02 0.0086 24.4 10.2 106 5-138 361-471 (556)
222 COG0615 TagD Cytidylyltransfer 32.3 54 0.0012 24.5 2.9 58 75-137 63-120 (140)
223 COG0075 Serine-pyruvate aminot 32.3 3.3E+02 0.0072 24.0 8.3 18 87-104 149-166 (383)
224 cd06295 PBP1_CelR Ligand bindi 32.2 2.6E+02 0.0056 22.2 7.7 18 88-105 53-70 (275)
225 COG0816 Predicted endonuclease 32.2 1.4E+02 0.0031 22.3 5.2 51 87-137 41-97 (141)
226 TIGR03249 KdgD 5-dehydro-4-deo 32.1 3E+02 0.0065 22.9 8.9 59 75-135 75-137 (296)
227 TIGR00715 precor6x_red precorr 32.1 90 0.0019 25.7 4.5 43 92-139 190-234 (256)
228 COG0381 WecB UDP-N-acetylgluco 31.7 2.6E+02 0.0056 24.7 7.4 42 1-42 1-42 (383)
229 COG0482 TrmU Predicted tRNA(5- 31.6 1.6E+02 0.0035 25.6 6.1 38 1-42 1-38 (356)
230 PF02729 OTCace_N: Aspartate/o 31.3 51 0.0011 24.5 2.7 40 84-132 81-120 (142)
231 cd02940 DHPD_FMN Dihydropyrimi 31.1 3.1E+02 0.0068 22.8 8.2 33 74-106 168-200 (299)
232 PF10649 DUF2478: Protein of u 30.6 94 0.002 23.7 4.1 46 90-136 84-131 (159)
233 PRK12569 hypothetical protein; 30.4 2.6E+02 0.0057 23.0 6.8 105 18-132 47-165 (245)
234 TIGR00290 MJ0570_dom MJ0570-re 30.3 2.7E+02 0.0058 22.5 6.9 89 5-109 2-95 (223)
235 PLN00118 isocitrate dehydrogen 30.2 1.3E+02 0.0029 26.3 5.4 79 14-107 184-263 (372)
236 TIGR01862 N2-ase-Ialpha nitrog 30.0 3.9E+02 0.0085 23.8 8.6 36 88-134 376-411 (443)
237 CHL00073 chlN photochlorophyll 30.0 4.2E+02 0.0091 24.0 9.4 50 65-117 360-409 (457)
238 PF02571 CbiJ: Precorrin-6x re 30.0 1.2E+02 0.0026 24.8 5.0 45 92-140 187-231 (249)
239 TIGR02313 HpaI-NOT-DapA 2,4-di 30.0 3.3E+02 0.0071 22.7 9.4 51 87-137 81-136 (294)
240 PF01993 MTD: methylene-5,6,7, 29.9 1.1E+02 0.0023 25.3 4.4 47 89-137 49-95 (276)
241 PRK05406 LamB/YcsF family prot 29.8 3.2E+02 0.0069 22.5 8.3 105 18-132 44-162 (246)
242 PRK12723 flagellar biosynthesi 29.7 3.9E+02 0.0085 23.5 10.1 109 7-137 179-296 (388)
243 PRK08334 translation initiatio 29.1 95 0.0021 27.0 4.3 57 74-136 219-280 (356)
244 PRK06036 translation initiatio 29.0 2.6E+02 0.0057 24.2 7.0 57 74-136 207-267 (339)
245 cd08175 G1PDH Glycerol-1-phosp 28.9 3.7E+02 0.0079 22.9 10.4 40 90-136 72-112 (348)
246 TIGR00683 nanA N-acetylneurami 28.6 3.4E+02 0.0075 22.5 9.9 51 87-137 82-137 (290)
247 COG1737 RpiR Transcriptional r 28.5 77 0.0017 26.3 3.7 41 1-42 175-215 (281)
248 PRK09195 gatY tagatose-bisphos 28.5 89 0.0019 26.3 4.0 55 81-136 25-82 (284)
249 PRK02842 light-independent pro 28.5 3.8E+02 0.0081 23.7 8.2 27 80-107 342-368 (427)
250 COG2069 CdhD CO dehydrogenase/ 28.3 3.8E+02 0.0083 23.0 9.0 31 16-46 149-179 (403)
251 cd05569 PTS_IIB_fructose PTS_I 28.1 1.3E+02 0.0028 20.6 4.2 47 63-111 19-65 (96)
252 TIGR00169 leuB 3-isopropylmala 28.0 1.4E+02 0.0031 25.8 5.3 77 14-106 163-239 (349)
253 COG2179 Predicted hydrolase of 27.9 34 0.00074 26.5 1.3 36 3-39 35-70 (175)
254 TIGR01279 DPOR_bchN light-inde 27.9 3.9E+02 0.0084 23.5 8.1 29 79-108 324-352 (407)
255 cd00954 NAL N-Acetylneuraminic 27.9 3.5E+02 0.0076 22.4 9.6 51 87-137 82-137 (288)
256 smart00732 YqgFc Likely ribonu 27.9 1.7E+02 0.0036 19.4 4.8 50 87-136 39-92 (99)
257 cd08189 Fe-ADH5 Iron-containin 27.6 2E+02 0.0044 24.8 6.3 20 88-107 72-92 (374)
258 TIGR00853 pts-lac PTS system, 27.5 2.1E+02 0.0045 19.6 5.2 39 1-39 1-39 (95)
259 PRK09860 putative alcohol dehy 27.4 1.9E+02 0.0041 25.2 6.0 20 88-107 77-97 (383)
260 PF14639 YqgF: Holliday-juncti 27.4 72 0.0016 24.0 3.0 48 88-136 52-106 (150)
261 PRK08384 thiamine biosynthesis 27.3 4.3E+02 0.0093 23.2 11.4 35 4-42 181-215 (381)
262 PRK07998 gatY putative fructos 27.3 90 0.0019 26.2 3.8 50 87-136 30-82 (283)
263 PRK06371 translation initiatio 27.1 1.1E+02 0.0024 26.3 4.3 57 74-136 196-257 (329)
264 PRK10799 metal-binding protein 27.1 77 0.0017 25.8 3.3 30 3-39 35-64 (247)
265 CHL00076 chlB photochlorophyll 27.0 1.1E+02 0.0023 28.1 4.5 49 87-135 73-123 (513)
266 PRK07028 bifunctional hexulose 27.0 4.4E+02 0.0096 23.3 9.4 35 1-39 1-35 (430)
267 TIGR01391 dnaG DNA primase, ca 27.0 3.3E+02 0.0072 24.0 7.5 34 4-37 301-334 (415)
268 cd00947 TBP_aldolase_IIB Tagat 26.9 1.2E+02 0.0025 25.5 4.4 51 87-137 25-78 (276)
269 KOG1552 Predicted alpha/beta h 26.8 1.1E+02 0.0023 25.4 4.0 63 73-137 126-201 (258)
270 PF06050 HGD-D: 2-hydroxygluta 26.7 1E+02 0.0022 26.0 4.2 50 87-136 274-325 (349)
271 TIGR03156 GTP_HflX GTP-binding 26.6 4.2E+02 0.009 22.8 8.1 20 88-107 55-74 (351)
272 PRK05647 purN phosphoribosylgl 26.6 3.2E+02 0.0069 21.5 9.6 85 4-109 2-90 (200)
273 smart00493 TOPRIM topoisomeras 26.5 1.2E+02 0.0026 19.1 3.6 18 6-23 50-67 (76)
274 COG2262 HflX GTPases [General 26.5 4.2E+02 0.0091 23.6 7.8 46 79-132 51-96 (411)
275 COG2201 CheB Chemotaxis respon 26.5 4.3E+02 0.0094 23.0 8.3 66 65-136 17-82 (350)
276 PF01791 DeoC: DeoC/LacD famil 26.5 3.3E+02 0.0072 21.7 8.7 73 61-135 113-200 (236)
277 TIGR02260 benz_CoA_red_B benzo 26.4 1.7E+02 0.0037 25.9 5.6 50 87-136 338-389 (413)
278 PRK00779 ornithine carbamoyltr 26.4 4E+02 0.0086 22.5 9.9 28 1-28 2-30 (304)
279 PF05762 VWA_CoxE: VWA domain 26.3 2.6E+02 0.0057 22.2 6.3 54 82-136 127-187 (222)
280 COG0358 DnaG DNA primase (bact 26.3 2.2E+02 0.0047 26.4 6.5 31 4-34 291-321 (568)
281 PRK08305 spoVFB dipicolinate s 26.2 1.8E+02 0.004 22.9 5.2 114 3-136 5-129 (196)
282 PRK05720 mtnA methylthioribose 26.1 1E+02 0.0022 26.7 3.9 59 74-138 206-269 (344)
283 cd01974 Nitrogenase_MoFe_beta 26.0 4.7E+02 0.01 23.2 8.4 99 4-136 304-403 (435)
284 PRK14561 hypothetical protein; 25.8 3.2E+02 0.0069 21.2 10.4 87 5-113 2-108 (194)
285 PRK08997 isocitrate dehydrogen 25.7 1.8E+02 0.0039 25.1 5.4 79 14-107 147-226 (334)
286 TIGR00674 dapA dihydrodipicoli 25.7 3.8E+02 0.0083 22.1 9.4 47 91-137 85-133 (285)
287 PRK04147 N-acetylneuraminate l 25.7 3.9E+02 0.0084 22.2 9.5 51 87-137 85-139 (293)
288 TIGR00175 mito_nad_idh isocitr 25.6 1.7E+02 0.0038 25.1 5.3 78 14-106 145-223 (333)
289 PRK06372 translation initiatio 25.6 1.9E+02 0.0041 23.9 5.4 39 99-137 151-194 (253)
290 TIGR02089 TTC tartrate dehydro 25.4 1.6E+02 0.0034 25.7 5.0 79 14-107 164-242 (352)
291 PRK00772 3-isopropylmalate deh 25.3 1.6E+02 0.0036 25.6 5.2 78 14-107 166-243 (358)
292 PLN02285 methionyl-tRNA formyl 25.1 4.4E+02 0.0095 22.6 8.1 22 89-110 83-104 (334)
293 PRK14025 multifunctional 3-iso 25.0 2.2E+02 0.0049 24.5 5.8 79 14-107 140-223 (330)
294 PF00215 OMPdecase: Orotidine 24.9 3.5E+02 0.0076 21.4 7.2 86 5-107 2-93 (226)
295 PRK13964 coaD phosphopantethei 24.7 3E+02 0.0064 20.4 8.7 26 90-115 73-98 (140)
296 TIGR00486 YbgI_SA1388 dinuclea 24.6 1E+02 0.0022 25.1 3.6 31 2-39 35-65 (249)
297 PRK03620 5-dehydro-4-deoxygluc 24.4 4.2E+02 0.0091 22.1 8.7 61 74-136 76-140 (303)
298 TIGR01304 IMP_DH_rel_2 IMP deh 24.3 4.4E+02 0.0094 23.1 7.6 57 77-133 133-193 (369)
299 cd02069 methionine_synthase_B1 24.3 2E+02 0.0044 22.8 5.2 49 86-134 126-175 (213)
300 cd05008 SIS_GlmS_GlmD_1 SIS (S 24.3 1.4E+02 0.003 20.9 4.0 39 3-42 46-84 (126)
301 cd06361 PBP1_GPC6A_like Ligand 24.3 4.8E+02 0.01 22.7 12.5 98 2-110 171-269 (403)
302 COG0669 CoaD Phosphopantethein 24.2 3.3E+02 0.0071 20.8 9.5 45 89-135 72-119 (159)
303 PRK12755 phospho-2-dehydro-3-d 24.2 4.8E+02 0.01 22.7 8.2 117 5-135 54-188 (353)
304 PRK00861 putative lipid kinase 23.9 4.2E+02 0.0091 21.9 7.7 58 75-137 33-90 (300)
305 PF07799 DUF1643: Protein of u 23.7 2.9E+02 0.0062 20.0 8.3 93 16-137 30-127 (136)
306 TIGR00259 thylakoid_BtpA membr 23.7 2.4E+02 0.0052 23.3 5.6 62 73-135 144-207 (257)
307 cd02801 DUS_like_FMN Dihydrour 23.6 3.6E+02 0.0078 21.1 8.4 116 19-135 68-190 (231)
308 PRK10624 L-1,2-propanediol oxi 23.5 2.5E+02 0.0055 24.3 6.1 20 88-107 76-96 (382)
309 TIGR03191 benz_CoA_bzdO benzoy 23.4 1.9E+02 0.0041 25.8 5.3 51 85-135 347-398 (430)
310 PTZ00170 D-ribulose-5-phosphat 23.3 2.2E+02 0.0047 22.9 5.3 27 81-108 177-203 (228)
311 TIGR00177 molyb_syn molybdenum 23.3 2.8E+02 0.0061 20.3 5.5 40 65-106 32-73 (144)
312 PRK01269 tRNA s(4)U8 sulfurtra 23.1 5.6E+02 0.012 23.1 11.3 35 4-42 178-212 (482)
313 COG1058 CinA Predicted nucleot 23.1 3.2E+02 0.0069 22.6 6.2 65 64-133 25-92 (255)
314 cd05403 NT_KNTase_like Nucleot 23.0 94 0.002 20.2 2.7 47 64-114 6-52 (93)
315 COG2876 AroA 3-deoxy-D-arabino 23.0 1.4E+02 0.003 25.0 4.0 86 12-110 53-139 (286)
316 TIGR00381 cdhD CO dehydrogenas 23.0 2.3E+02 0.005 25.0 5.5 48 87-134 141-194 (389)
317 PRK09261 phospho-2-dehydro-3-d 22.8 5.1E+02 0.011 22.5 8.0 50 74-135 137-187 (349)
318 cd06277 PBP1_LacI_like_1 Ligan 22.8 3.8E+02 0.0083 21.1 7.9 39 91-136 50-88 (268)
319 cd02065 B12-binding_like B12 b 22.7 2.2E+02 0.0048 19.6 4.8 60 74-136 27-88 (125)
320 KOG2310 DNA repair exonuclease 22.7 77 0.0017 29.2 2.7 48 87-134 40-95 (646)
321 PRK11058 GTPase HflX; Provisio 22.6 4.9E+02 0.011 23.1 7.8 20 88-107 63-82 (426)
322 TIGR01520 FruBisAldo_II_A fruc 22.6 3.7E+02 0.008 23.5 6.7 51 87-137 39-108 (357)
323 TIGR00167 cbbA ketose-bisphosp 22.6 3.8E+02 0.0083 22.5 6.7 50 87-136 30-85 (288)
324 COG3360 Uncharacterized conser 22.5 2.1E+02 0.0045 18.6 3.9 40 3-43 6-46 (71)
325 PRK02551 flavoprotein NrdI; Pr 22.3 49 0.0011 25.1 1.2 48 87-134 79-129 (154)
326 TIGR02088 LEU3_arch isopropylm 22.2 2.4E+02 0.0052 24.2 5.5 26 13-38 140-165 (322)
327 PRK00771 signal recognition pa 22.2 5.7E+02 0.012 22.9 11.3 91 7-115 100-191 (437)
328 TIGR03127 RuMP_HxlB 6-phospho 22.2 1.5E+02 0.0032 22.4 4.0 40 2-42 71-110 (179)
329 cd01537 PBP1_Repressors_Sugar_ 22.1 3.7E+02 0.008 20.6 8.7 67 64-137 20-88 (264)
330 PF00539 Tat: Transactivating 22.1 43 0.00093 21.7 0.8 23 188-210 46-68 (68)
331 PRK10416 signal recognition pa 22.0 4.9E+02 0.011 22.1 11.7 90 7-114 119-211 (318)
332 PRK06988 putative formyltransf 21.9 4.9E+02 0.011 22.0 10.1 40 65-109 47-87 (312)
333 COG2102 Predicted ATPases of P 21.9 4.4E+02 0.0095 21.4 9.0 90 5-108 2-95 (223)
334 PLN02329 3-isopropylmalate deh 21.7 1.2E+02 0.0027 26.9 3.7 26 14-39 211-236 (409)
335 cd01996 Alpha_ANH_like_III Thi 21.6 3.3E+02 0.0071 19.8 10.4 34 5-41 3-36 (154)
336 PRK11613 folP dihydropteroate 21.5 4.9E+02 0.011 21.8 8.2 103 16-136 37-141 (282)
337 COG1606 ATP-utilizing enzymes 21.4 4.8E+02 0.01 21.7 10.8 89 3-109 17-123 (269)
338 COG0137 ArgG Argininosuccinate 21.3 5.8E+02 0.013 22.6 10.5 109 1-112 2-125 (403)
339 PF01268 FTHFS: Formate--tetra 21.3 1.5E+02 0.0033 27.4 4.3 121 5-141 373-495 (557)
340 cd08178 AAD_C C-terminal alcoh 21.2 2.7E+02 0.0058 24.4 5.8 20 88-107 67-87 (398)
341 PRK13307 bifunctional formalde 21.2 5.8E+02 0.013 22.5 10.0 84 5-107 174-258 (391)
342 cd07388 MPP_Tt1561 Thermus the 21.1 2.8E+02 0.0061 22.3 5.5 20 88-107 20-39 (224)
343 KOG3111 D-ribulose-5-phosphate 21.0 2.9E+02 0.0063 22.1 5.2 44 62-109 157-200 (224)
344 PF13155 Toprim_2: Toprim-like 21.0 1.6E+02 0.0035 19.5 3.6 28 4-31 48-75 (96)
345 cd08185 Fe-ADH1 Iron-containin 21.0 3.5E+02 0.0077 23.4 6.5 20 88-107 72-92 (380)
346 cd08176 LPO Lactadehyde:propan 20.9 2.8E+02 0.006 24.0 5.8 20 88-107 74-94 (377)
347 PF01116 F_bP_aldolase: Fructo 20.9 61 0.0013 27.2 1.6 49 86-134 28-79 (287)
348 cd05710 SIS_1 A subgroup of th 20.8 1.8E+02 0.004 20.4 4.0 39 3-42 47-85 (120)
349 PF00180 Iso_dh: Isocitrate/is 20.7 1.5E+02 0.0032 25.6 4.0 78 14-107 160-239 (348)
350 PF07972 Flavodoxin_NdrI: NrdI 20.7 1E+02 0.0022 22.4 2.5 48 87-134 57-107 (122)
351 TIGR02263 benz_CoA_red_C benzo 20.6 1.9E+02 0.0042 25.1 4.8 48 87-134 309-357 (380)
352 cd01967 Nitrogenase_MoFe_alpha 20.6 1.7E+02 0.0037 25.5 4.4 29 84-112 103-131 (406)
353 PRK03692 putative UDP-N-acetyl 20.6 4.7E+02 0.01 21.3 8.1 17 91-107 149-165 (243)
354 PF00289 CPSase_L_chain: Carba 20.5 3.2E+02 0.0068 19.2 5.5 76 2-107 1-82 (110)
355 PRK13306 ulaD 3-keto-L-gulonat 20.4 4.4E+02 0.0096 20.9 9.7 88 1-107 1-88 (216)
356 PRK13399 fructose-1,6-bisphosp 20.4 1.8E+02 0.0039 25.2 4.4 54 82-136 26-83 (347)
357 COG1433 Uncharacterized conser 20.2 1.7E+02 0.0037 21.2 3.6 41 88-136 54-94 (121)
358 TIGR02638 lactal_redase lactal 20.2 3E+02 0.0066 23.8 5.9 20 88-107 75-95 (379)
359 PRK08417 dihydroorotase; Provi 20.1 2.2E+02 0.0047 24.8 5.0 27 16-42 180-206 (386)
360 COG1922 WecG Teichoic acid bio 20.0 4E+02 0.0087 22.0 6.1 25 8-32 15-39 (253)
No 1
>PRK09982 universal stress protein UspD; Provisional
Probab=99.95 E-value=1e-26 Score=175.20 Aligned_cols=133 Identities=15% Similarity=0.208 Sum_probs=104.5
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccch-----HHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNR-----KKLRLLRLKGYQLALSFKDICNDFFNT 75 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~i 75 (211)
|||++||||+|+|+.+..|+++|..+|+..+++|+++||.+..+.... ......+...+...+.+++..+.....
T Consensus 1 ~~~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (142)
T PRK09982 1 MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWP 80 (142)
T ss_pred CCceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999999999999999999999999976432110 111112222222333344444433345
Q ss_pred cEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcC
Q 028280 76 NVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 76 ~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.++..+..|+ |++.|+++|++.++||||||+| ++++.+ +| ++++|+++++||||+||.
T Consensus 81 ~~~~~v~~G~-p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~~-va~~V~~~s~~pVLvv~~ 139 (142)
T PRK09982 81 KTKLRIERGE-MPETLLEIMQKEQCDLLVCGHH-HSFINRLMP-AYRGMINKMSADLLIVPF 139 (142)
T ss_pred cceEEEEecC-HHHHHHHHHHHcCCCEEEEeCC-hhHHHHHHH-HHHHHHhcCCCCEEEecC
Confidence 6788889999 9999999999999999999986 788888 74 999999999999999985
No 2
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.94 E-value=1.5e-25 Score=168.81 Aligned_cols=134 Identities=15% Similarity=0.213 Sum_probs=101.1
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchH-----HHHHHHHHHHHHHHHHHHHHhhhCCC
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRK-----KLRLLRLKGYQLALSFKDICNDFFNT 75 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~i 75 (211)
|+|++||||+|+|+.+..|+++|..+|+.++++|++|||.++....... .....+...++..+.+.++... .++
T Consensus 1 ~~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~ 79 (144)
T PRK15118 1 MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTN-AGY 79 (144)
T ss_pred CCceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 8999999999999999999999999999999999999995432111100 0111112222333444444443 366
Q ss_pred cEE-EEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 76 NVE-IIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 76 ~~~-~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
.+. ..+..|+ +.++|+++|++.++||||||+|+ +.+..+||++++|+++++||||+||..
T Consensus 80 ~~~~~~~~~G~-p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~lgSva~~v~~~a~~pVLvv~~~ 140 (144)
T PRK15118 80 PITETLSGSGD-LGQVLVDAIKKYDMDLVVCGHHQ-DFWSKLMSSARQLINTVHVDMLIVPLR 140 (144)
T ss_pred CceEEEEEecC-HHHHHHHHHHHhCCCEEEEeCcc-cHHHHHHHHHHHHHhhCCCCEEEecCC
Confidence 654 4556899 99999999999999999999996 444449999999999999999999864
No 3
>PRK15456 universal stress protein UspG; Provisional
Probab=99.94 E-value=2.5e-25 Score=167.30 Aligned_cols=131 Identities=20% Similarity=0.231 Sum_probs=102.0
Q ss_pred CCCeEEEEecCCH--HHHHHHHHHHHhhccCCCEEEEEEEecCCCccc-----hHHHHHHHHHHHHHHHHHHHHHhh--h
Q 028280 2 DVKKIVVIVEDVD--AARAALLWALQNLLRFGDVVTLLHVFPSLNSRN-----RKKLRLLRLKGYQLALSFKDICND--F 72 (211)
Q Consensus 2 ~~k~ILv~vD~s~--~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~--~ 72 (211)
||++||||+|||+ .+..|+++|..+|+.. ++++++||+++..... .+..+..+...+...+.+.++.+. .
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI 79 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 6999999999994 7999999999999874 6999999998643211 111111122222333444444443 2
Q ss_pred CCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEc
Q 028280 73 FNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 73 ~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~ 135 (211)
.+.++++.+..|+ +.++|.++++++++||||||+||++ +.+ +||++++|+++++|||||||
T Consensus 80 ~~~~v~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~~v~~~a~~pVLvV~ 142 (142)
T PRK15456 80 DPSRIKQHVRFGS-VRDEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPVLVVR 142 (142)
T ss_pred CCcceEEEEcCCC-hHHHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHHHHHHcCCCCEEEeC
Confidence 4778899999999 9999999999999999999999987 555 89999999999999999996
No 4
>PRK15005 universal stress protein F; Provisional
Probab=99.94 E-value=2.9e-25 Score=166.88 Aligned_cols=132 Identities=19% Similarity=0.252 Sum_probs=102.7
Q ss_pred CCCeEEEEecCCHH--HHHHHHHHHHhhccCCCEEEEEEEecCCCccc------hHHHHHHHHHHHHHHHHHHHHHhh--
Q 028280 2 DVKKIVVIVEDVDA--ARAALLWALQNLLRFGDVVTLLHVFPSLNSRN------RKKLRLLRLKGYQLALSFKDICND-- 71 (211)
Q Consensus 2 ~~k~ILv~vD~s~~--s~~al~~A~~la~~~~a~l~llhV~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~-- 71 (211)
||++||+|+|+|+. +..|++||..+|+..+++|+++||++..+... .......++..++..+.+.++++.
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFK 80 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhC
Confidence 68999999999998 58999999999999999999999998633210 000011112222333444444443
Q ss_pred hCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEc
Q 028280 72 FFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 72 ~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~ 135 (211)
.+++++++.+..|+ +.+.|++++++.++||||||+++ +++.+ +||++++|+++++|||||||
T Consensus 81 ~~~~~~~~~v~~G~-p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~llGS~a~~vl~~a~cpVlvVr 144 (144)
T PRK15005 81 LPTDRVHVHVEEGS-PKDRILELAKKIPADMIIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 144 (144)
T ss_pred CCCCceEEEEeCCC-HHHHHHHHHHHcCCCEEEEeCCC-CCchheeecchHHHHHHhCCCCEEEeC
Confidence 34677889999999 99999999999999999999995 45555 99999999999999999996
No 5
>PRK10116 universal stress protein UspC; Provisional
Probab=99.93 E-value=2.6e-24 Score=161.42 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=105.7
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccc-h--HH-HHHHHHHHHHHHHHHHHHHhhhCCCc
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRN-R--KK-LRLLRLKGYQLALSFKDICNDFFNTN 76 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-~--~~-~~~~~~~~~~~~~~l~~~~~~~~~i~ 76 (211)
|+|++|||++|+|+.+..++++|..+|+.++++|+++|+++...... . .. .+..+...++..+.+++...+ .+++
T Consensus 1 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 79 (142)
T PRK10116 1 MSYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQD-ADYP 79 (142)
T ss_pred CCCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 99999999999999999999999999999999999999987643211 1 11 111122222333444444443 3665
Q ss_pred EE-EEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 77 VE-IIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 77 ~~-~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
.. ..+..|+ +.+.|++++++.++||||||+++++++.+++|++++++++++|||||||..
T Consensus 80 ~~~~~~~~G~-~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~~s~a~~v~~~~~~pVLvv~~~ 140 (142)
T PRK10116 80 IEKTFIAYGE-LSEHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLVPLT 140 (142)
T ss_pred eEEEEEecCC-HHHHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 54 5667898 999999999999999999999999988887799999999999999999853
No 6
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.92 E-value=3.8e-24 Score=161.28 Aligned_cols=131 Identities=23% Similarity=0.369 Sum_probs=103.6
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccch------HHH---HHHHHHHHHHHHHHHHHHhhhCCC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNR------KKL---RLLRLKGYQLALSFKDICNDFFNT 75 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~------~~~---~~~~~~~~~~~~~l~~~~~~~~~i 75 (211)
+||||+|+|+.++.|++||+.++...+++++++||.++...... ... ...++..++.++.+.+.+.. .++
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSR-KGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC
Confidence 58999999999999999999999999999999999976432110 111 11222333344444444433 488
Q ss_pred cEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cc-cHHHHHHccCC--ceEEEEcC
Q 028280 76 NVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LA-MSHNDISSSFN--CRVLAIKQ 136 (211)
Q Consensus 76 ~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~g-s~a~~vl~~a~--~PVLvV~~ 136 (211)
.++..+..|.+++++|+++|++.++||||||+++++++.+ +| |++.+|+++++ ||||||+.
T Consensus 80 ~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~~ 145 (146)
T cd01989 80 QCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVSK 145 (146)
T ss_pred eEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEEeC
Confidence 8898888874499999999999999999999999999887 67 69999999999 99999985
No 7
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.91 E-value=5.8e-23 Score=151.26 Aligned_cols=133 Identities=23% Similarity=0.279 Sum_probs=103.0
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHH--HHHHHHHH---HHHHHHHHhhhCCCc
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRL--LRLKGYQL---ALSFKDICNDFFNTN 76 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~--~~~~~~~~---~~~l~~~~~~~~~i~ 76 (211)
||++|||++|+++.+..++.||+.++...+++|+++||.+............ ........ ............+..
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAEGGIV 80 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhhccce
Confidence 7899999999999999999999999999999999999999865432111111 00000000 000102222345677
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEc
Q 028280 77 VEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 77 ~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~ 135 (211)
....+..|+ +.++|++++++.++|+||||+++++++.+ +||++++++++++|||||||
T Consensus 81 ~~~~~~~~~-~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 81 IEVVIESGD-VADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp EEEEEEESS-HHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEEE
T ss_pred eEEEEEeec-cchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEeC
Confidence 777888898 99999999999999999999999988887 99999999999999999996
No 8
>PRK11175 universal stress protein UspE; Provisional
Probab=99.90 E-value=5.8e-23 Score=172.59 Aligned_cols=152 Identities=15% Similarity=0.093 Sum_probs=115.4
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc-----chHHHH-HHHHHHHHHHHHHHHHHhh--h
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR-----NRKKLR-LLRLKGYQLALSFKDICND--F 72 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-----~~~~~~-~~~~~~~~~~~~l~~~~~~--~ 72 (211)
|||++|||++|+|+.+..|+.+|+.+|+..+++|+++|+++..... ...... ..+...++..+.+++.+.. .
T Consensus 1 ~~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (305)
T PRK11175 1 AKYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPYLD 80 (305)
T ss_pred CCcceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999998653211 111111 1111112222333333322 2
Q ss_pred CCCcEEEEEe-eCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCCCCCCccccccCC
Q 028280 73 FNTNVEIIVT-EGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQPAASPQLRTQTSA 149 (211)
Q Consensus 73 ~~i~~~~~v~-~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~~~~~~~~~~~~~ 149 (211)
.+++++..+. .|+ +.++|.++++++++||||||+++.+++.+ +||++++++++++||||+|+.... ....++
T Consensus 81 ~~~~~~~~v~~~g~-~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~~~----~~~~~I 155 (305)
T PRK11175 81 AGIPIEIKVVWHNR-PFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQDW----PEGGKI 155 (305)
T ss_pred cCCceEEEEecCCC-cHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEeccccc----CCCCeE
Confidence 4788888776 477 99999999999999999999999988877 899999999999999999997422 234568
Q ss_pred CcCCCCCC
Q 028280 150 ATTPDRSS 157 (211)
Q Consensus 150 ~~~~d~~~ 157 (211)
+++.|++.
T Consensus 156 lva~D~s~ 163 (305)
T PRK11175 156 LVAVNVAS 163 (305)
T ss_pred EEEeCCCC
Confidence 88999873
No 9
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.90 E-value=4.9e-22 Score=146.60 Aligned_cols=129 Identities=20% Similarity=0.227 Sum_probs=105.2
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee-
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE- 83 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~- 83 (211)
+||||+|+++.+..++++|..+|...+++++++|+++..............+..++..+.+.+.+.+. |++++..+..
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~ 79 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASL-GVPVHTIIRID 79 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhc-CCceEEEEEec
Confidence 69999999999999999999999999999999999986543221111222334445555566665553 7888887765
Q ss_pred CCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEc
Q 028280 84 GDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 84 G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~ 135 (211)
|+ +.++|++++++.++|+||||.++++++.+ +||++++|+++++|||++||
T Consensus 80 ~~-~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvlvv~ 132 (132)
T cd01988 80 HD-IASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVAVVK 132 (132)
T ss_pred CC-HHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEEEeC
Confidence 66 99999999999999999999999998855 99999999999999999986
No 10
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.85 E-value=1.3e-20 Score=138.11 Aligned_cols=121 Identities=16% Similarity=0.126 Sum_probs=95.8
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G 84 (211)
+||||+|+++.++.+++||..++...+++|+++||.++..... .+..++.++.+.+.+++. +++ ..+..+
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~-------~~~~~~~l~~~~~~~~~~-~~~--~~~~~~ 70 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRL-------SEAERRRLAEALRLAEEL-GAE--VVTLPG 70 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccC-------CHHHHHHHHHHHHHHHHc-CCE--EEEEeC
Confidence 6999999999999999999999999999999999998643210 111223334444444432 443 333344
Q ss_pred CCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccC-CceEEEEc
Q 028280 85 DQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSF-NCRVLAIK 135 (211)
Q Consensus 85 ~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a-~~PVLvV~ 135 (211)
.++.++|.++++++++|+||||+++++++.+ +||++++|++++ +|||||+.
T Consensus 71 ~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~~ 124 (124)
T cd01987 71 DDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIVA 124 (124)
T ss_pred CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEeC
Confidence 4499999999999999999999999999988 999999999999 99999983
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.83 E-value=1.7e-19 Score=151.50 Aligned_cols=132 Identities=21% Similarity=0.230 Sum_probs=101.0
Q ss_pred CCeEEEEecCCHH-------HHHHHHHHHHhhccC-CCEEEEEEEecCCCcc------chHHHHHHHHHHHHHHHHHHHH
Q 028280 3 VKKIVVIVEDVDA-------ARAALLWALQNLLRF-GDVVTLLHVFPSLNSR------NRKKLRLLRLKGYQLALSFKDI 68 (211)
Q Consensus 3 ~k~ILv~vD~s~~-------s~~al~~A~~la~~~-~a~l~llhV~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~ 68 (211)
+++||+|+|+|+. +..++++|..++... +++|+++||.+..... .....+..+....+..+.++++
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 231 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKAL 231 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 6899999999865 368999999999998 9999999998753311 0011111122222333445555
Q ss_pred HhhhCCCcE-EEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 69 CNDFFNTNV-EIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 69 ~~~~~~i~~-~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+.. ++.. ...+..|+ +.++|.+++++.++||||||+++++++.+ +||++++|+++++||||+||+
T Consensus 232 ~~~~-~~~~~~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pVLvv~~ 300 (305)
T PRK11175 232 RQKF-GIDEEQTHVEEGL-PEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDLLAIKP 300 (305)
T ss_pred HHHh-CCChhheeeccCC-HHHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCEEEEcC
Confidence 5443 4443 45677898 99999999999999999999999999988 999999999999999999985
No 12
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.80 E-value=4.4e-18 Score=123.83 Aligned_cols=128 Identities=28% Similarity=0.398 Sum_probs=101.9
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G 84 (211)
+|||++|+++.+..++++|..+|...+++++++|+.+.................++.++.+...+. ..++.++..+..|
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~ 79 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALA-EAGVKVETVVLEG 79 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHh-cCCCceEEEEecC
Confidence 689999999999999999999999999999999999865432211111122223333333443332 3588888898999
Q ss_pred CCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEE
Q 028280 85 DQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 85 ~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV 134 (211)
+ +.++|.+++++.++|+||||+++++.+.+ +|+++++++++++||||++
T Consensus 80 ~-~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 80 D-PAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred C-CHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEEeC
Confidence 9 89999999999999999999999988766 9999999999999999985
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.79 E-value=9.7e-18 Score=126.07 Aligned_cols=135 Identities=28% Similarity=0.299 Sum_probs=108.5
Q ss_pred CCCCeEEEEec-CCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccc-h----HH------HHHHHHHHHHHHHHHHHH
Q 028280 1 MDVKKIVVIVE-DVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRN-R----KK------LRLLRLKGYQLALSFKDI 68 (211)
Q Consensus 1 m~~k~ILv~vD-~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-~----~~------~~~~~~~~~~~~~~l~~~ 68 (211)
+++++|++++| +++.+..+++++..++...++.+.+++|.+...... . .. .........+..+.+.+.
T Consensus 3 ~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (154)
T COG0589 3 AMYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKAL 82 (154)
T ss_pred cccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 57899999999 999999999999999999999999999997643221 0 00 111223334444555555
Q ss_pred HhhhCCCc-EEEEEeeCCCH-HHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCC
Q 028280 69 CNDFFNTN-VEIIVTEGDQE-GARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 69 ~~~~~~i~-~~~~v~~G~~~-~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
... .++. ++..+..|+ + .+.|+.++.++++|+||||+++++++.+ |||++++++++++|||++++..
T Consensus 83 ~~~-~~~~~~~~~~~~g~-~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~pVlvv~~~ 153 (154)
T COG0589 83 AEA-AGVPVVETEVVEGS-PSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLVVRSE 153 (154)
T ss_pred HHH-cCCCeeEEEEecCC-CcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcCCCCEEEEccC
Confidence 544 3666 588899999 7 7999999999999999999999999998 9999999999999999999863
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.67 E-value=1.5e-15 Score=129.90 Aligned_cols=130 Identities=12% Similarity=0.061 Sum_probs=92.2
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccC--CCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhh-----hC
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRF--GDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICND-----FF 73 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~ 73 (211)
||||+||||+|+|+.+++|+++|+++|+.. +++|++|||.+........ .......+++.+.+.+.+++ ..
T Consensus 3 ~~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~--~~~~~~~eelle~~~~~~~~~l~~~~~ 80 (357)
T PRK12652 3 MAANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEG--QDELAAAEELLERVEVWATEDLGDDAS 80 (357)
T ss_pred cccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccch--hHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 789999999999999999999999999985 5999999999864322111 12223333444445444443 25
Q ss_pred CCcEEEEEee--------CCCHHHHHHHHHHHhCCCEEEEecCCCC-cccccccHHHHHHccCCceEEE
Q 028280 74 NTNVEIIVTE--------GDQEGARIAALVREIGASALVVGLHDRS-FLHKLAMSHNDISSSFNCRVLA 133 (211)
Q Consensus 74 ~i~~~~~v~~--------G~~~~~~I~~~a~~~~adLIVmG~~~~~-~~~~~gs~a~~vl~~a~~PVLv 133 (211)
|+++++.+.. |+ ++++|+++|+++++||||||..=.- +...+-.--+.=+.++.|.+=.
T Consensus 81 gV~ve~~vv~~~~~~~~~G~-pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (357)
T PRK12652 81 SVTIETALLGTDEYLFGPGD-YAEVLIAYAEEHGIDRVVLDPEYNPGGTAPMLQPLERELARAGITYEE 148 (357)
T ss_pred CCceEEEEEeccccccCCCC-HHHHHHHHHHHcCCCEEEECCCCCCCCCCcccchHHHHHHhcCCceec
Confidence 8999988866 78 9999999999999999999986432 2222222233445566666543
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.20 E-value=3.4e-10 Score=108.00 Aligned_cols=124 Identities=10% Similarity=0.079 Sum_probs=96.2
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
.+||||+++++.++.++.+|..+|.+.++++++|||.++...... .+....+.+.+ +++++. |-+ +....
T Consensus 251 eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~------~~~~~~l~~~~-~lA~~l-Ga~--~~~~~ 320 (895)
T PRK10490 251 DAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLP------EKKRRAILSAL-RLAQEL-GAE--TATLS 320 (895)
T ss_pred CeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCC------HHHHHHHHHHH-HHHHHc-CCE--EEEEe
Confidence 579999999999999999999999999999999999876322111 11122333334 355544 444 44556
Q ss_pred CCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCC-ceEEEEcCC
Q 028280 84 GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFN-CRVLAIKQP 137 (211)
Q Consensus 84 G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~-~PVLvV~~~ 137 (211)
|+|++++|+++|++.+++.||||..+++.+..-||+++++++.++ ..|.||+..
T Consensus 321 ~~dva~~i~~~A~~~~vt~IViG~s~~~~~~~~~s~~~~l~r~~~~idi~iv~~~ 375 (895)
T PRK10490 321 DPAEEKAVLRYAREHNLGKIIIGRRASRRWWRRESFADRLARLGPDLDLVIVALD 375 (895)
T ss_pred CCCHHHHHHHHHHHhCCCEEEECCCCCCCCccCCCHHHHHHHhCCCCCEEEEeCC
Confidence 767999999999999999999999998876225799999999997 999999643
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=98.89 E-value=3e-08 Score=91.20 Aligned_cols=126 Identities=17% Similarity=0.147 Sum_probs=99.1
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
.+||||++.++.+...+.+|..+|.+.++..+.+||..+....... ...........+++++ | -++.++.
T Consensus 249 e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~-------~~~~~l~~~~~Lae~l-G--ae~~~l~ 318 (890)
T COG2205 249 ERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSE-------KEARRLHENLRLAEEL-G--AEIVTLY 318 (890)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccH-------HHHHHHHHHHHHHHHh-C--CeEEEEe
Confidence 5899999999999999999999999999999999999875432111 1112223344444443 2 3455666
Q ss_pred CCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCC-ceEEEEcCCCC
Q 028280 84 GDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFN-CRVLAIKQPAA 139 (211)
Q Consensus 84 G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~-~PVLvV~~~~~ 139 (211)
|.|++++|+++|+.+++..||+|.+.++.+.+ .|+.+++++++.+ ..|.+|.....
T Consensus 319 ~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~ii~~~~~ 377 (890)
T COG2205 319 GGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHIVALDAP 377 (890)
T ss_pred CCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEEeeCCCC
Confidence 66699999999999999999999999998877 5899999999987 89999976443
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.61 E-value=2.4e-07 Score=63.33 Aligned_cols=82 Identities=20% Similarity=0.093 Sum_probs=71.8
Q ss_pred EEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCC
Q 028280 6 IVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGD 85 (211)
Q Consensus 6 ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~ 85 (211)
||++++++..|..++.++.+++ ..+.++..+|+. .
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~--------------------------------------------~ 35 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV--------------------------------------------A 35 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH--------------------------------------------H
Confidence 6899999999999999999988 457788888886 3
Q ss_pred CHHHHHHHHHHHhCCCEEEEecCCCCcccc--cc-cHHHHHHccCCceEEE
Q 028280 86 QEGARIAALVREIGASALVVGLHDRSFLHK--LA-MSHNDISSSFNCRVLA 133 (211)
Q Consensus 86 ~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~g-s~a~~vl~~a~~PVLv 133 (211)
....+.+.+++.++|+|++|.++.+..+. .| +++.++++.++|||+.
T Consensus 36 -~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~~~vl~ 85 (86)
T cd01984 36 -FVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAGIPVLT 85 (86)
T ss_pred -HHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhhhhcccccCCceeC
Confidence 67888899999999999999999988877 44 7899999999999974
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.44 E-value=0.002 Score=61.58 Aligned_cols=131 Identities=9% Similarity=0.109 Sum_probs=82.1
Q ss_pred eEEEEecCCHHHHHHHHHHHHh--hccCCCEEEEEEEecCCCccch----------HHH--HHHHHHHHHHHHHHHHHHh
Q 028280 5 KIVVIVEDVDAARAALLWALQN--LLRFGDVVTLLHVFPSLNSRNR----------KKL--RLLRLKGYQLALSFKDICN 70 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~l--a~~~~a~l~llhV~~~~~~~~~----------~~~--~~~~~~~~~~~~~l~~~~~ 70 (211)
|||+|+...++-...+..+-.. ..+..-.+.++|.++....... ... +......++....++.+.+
T Consensus 460 riL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 539 (832)
T PLN03159 460 RMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQ 539 (832)
T ss_pred eEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHh
Confidence 8999999888777776553332 2233468999999885421100 000 0000112344444444443
Q ss_pred hhCCCcEEEEE--eeCCCHHHHHHHHHHHhCCCEEEEecCCCCcc----cc----cccHHHHHHccCCceEEEEc
Q 028280 71 DFFNTNVEIIV--TEGDQEGARIAALVREIGASALVVGLHDRSFL----HK----LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 71 ~~~~i~~~~~v--~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~----~~----~gs~a~~vl~~a~~PVLvV~ 135 (211)
...++.++... ..-++..+.|+..|++..+++|+++.|++... .. ++.+-.+|++++||+|-|.=
T Consensus 540 ~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlV 614 (832)
T PLN03159 540 HAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILV 614 (832)
T ss_pred hcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEE
Confidence 22356666543 33335999999999999999999999975321 11 56688999999999996543
No 19
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=97.22 E-value=0.015 Score=55.74 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=36.0
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
.+|.+..=+.++.+.||.+|.+++.+.+-+++++|..+.
T Consensus 631 ~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~ 669 (832)
T PLN03159 631 HHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPG 669 (832)
T ss_pred eeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEcc
Confidence 488888889999999999999999999999999999875
No 20
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=96.87 E-value=0.033 Score=43.38 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=67.8
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee-
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE- 83 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~- 83 (211)
+|+|++.|..+|..++..+...+...+.++.++|+...... . ..+..+.++.+++.. |+++...-..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~---~--------~~~~~~~~~~~~~~~-gi~~~~~~~~~ 68 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRP---E--------SDEEAEFVQQFCKKL-NIPLEIKKVDV 68 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCh---h--------HHHHHHHHHHHHHHc-CCCEEEEEecc
Confidence 58999999999999999998888777788999999754321 0 011233456666654 6665554321
Q ss_pred -------CCCHH--------HHHHHHHHHhCCCEEEEecCCCCccc
Q 028280 84 -------GDQEG--------ARIAALVREIGASALVVGLHDRSFLH 114 (211)
Q Consensus 84 -------G~~~~--------~~I~~~a~~~~adLIVmG~~~~~~~~ 114 (211)
+.+.. ..+.+.|++++++.|+.|.+.....+
T Consensus 69 ~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~e 114 (189)
T TIGR02432 69 KALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQAE 114 (189)
T ss_pred hhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHHH
Confidence 11122 57888999999999999998665444
No 21
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=96.47 E-value=0.12 Score=40.17 Aligned_cols=99 Identities=20% Similarity=0.213 Sum_probs=64.7
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee-
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE- 83 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~- 83 (211)
+|+|++-|..+|-..+.....+....+-++.++||...-... . ....+.++++|+.+ ++++.+.-..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~--s---------~~~~~~v~~~~~~~-~i~~~~~~~~~ 68 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREE--S---------DEEAEFVEEICEQL-GIPLYIVRIDE 68 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCC--H---------HHHHHHHHHHHHHT-T-EEEEEE--C
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc--c---------chhHHHHHHHHHhc-CCceEEEEeee
Confidence 689999999999999999999999888999999998764421 1 11123467777765 7776665433
Q ss_pred ----CCCH--------HHHHHHHHHHhCCCEEEEecCCCCcccc
Q 028280 84 ----GDQE--------GARIAALVREIGASALVVGLHDRSFLHK 115 (211)
Q Consensus 84 ----G~~~--------~~~I~~~a~~~~adLIVmG~~~~~~~~~ 115 (211)
+.+. .+.+.++|++++++.|++|.|.....+.
T Consensus 69 ~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~ET 112 (182)
T PF01171_consen 69 DRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQAET 112 (182)
T ss_dssp HCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHHHH
T ss_pred eecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccHHH
Confidence 2212 1457789999999999999987665553
No 22
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=96.19 E-value=0.14 Score=39.63 Aligned_cols=98 Identities=21% Similarity=0.206 Sum_probs=66.8
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE--E-
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII--V- 81 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~--v- 81 (211)
+|+|++.|..+|..++..+.......+.++.++|+....... ..+..+.+.++++.. |+++++. .
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~-----------~~~~~~~~~~~~~~~-~i~~~~~~~~~ 68 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPE-----------SDEEAAFVADLCAKL-GIPLYILVVAL 68 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCch-----------HHHHHHHHHHHHHHc-CCcEEEEeecc
Confidence 589999999999999999988887777899999997543211 012233455666554 6666654 1
Q ss_pred eeC--CCH--------HHHHHHHHHHhCCCEEEEecCCCCccc
Q 028280 82 TEG--DQE--------GARIAALVREIGASALVVGLHDRSFLH 114 (211)
Q Consensus 82 ~~G--~~~--------~~~I~~~a~~~~adLIVmG~~~~~~~~ 114 (211)
..+ .++ ...+.++|++.+++.|+.|.+.....+
T Consensus 69 ~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~e 111 (185)
T cd01992 69 APKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQAE 111 (185)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHH
Confidence 111 111 155778899999999999988665443
No 23
>PRK12342 hypothetical protein; Provisional
Probab=95.36 E-value=0.2 Score=41.32 Aligned_cols=101 Identities=20% Similarity=0.122 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE----eeCCCH
Q 028280 12 DVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV----TEGDQE 87 (211)
Q Consensus 12 ~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v----~~G~~~ 87 (211)
.++...+|++.|+++. .+|.+++++++.++.... . .+ +++.+.. |.+=-+.+ ..|.|+
T Consensus 33 iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a~~-----~-------~l---~r~alam--GaD~avli~d~~~~g~D~ 94 (254)
T PRK12342 33 ISQFDLNAIEAASQLA-TDGDEIAALTVGGSLLQN-----S-------KV---RKDVLSR--GPHSLYLVQDAQLEHALP 94 (254)
T ss_pred CChhhHHHHHHHHHHh-hcCCEEEEEEeCCChHhH-----H-------HH---HHHHHHc--CCCEEEEEecCccCCCCH
Confidence 5678899999999999 689999999998862110 0 00 1222221 33222222 234446
Q ss_pred ---HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 88 ---GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 88 ---~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
+..|..+++..++|||+.|.....+- .|.+.-.+......|.+
T Consensus 95 ~ata~~La~~i~~~~~DLVl~G~~s~D~~--tgqvg~~lA~~Lg~P~v 140 (254)
T PRK12342 95 LDTAKALAAAIEKIGFDLLLFGEGSGDLY--AQQVGLLLGELLQLPVI 140 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCC--CCCHHHHHHHHhCCCcE
Confidence 68888999988999999997654432 23444455555555543
No 24
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=95.04 E-value=0.45 Score=39.29 Aligned_cols=102 Identities=18% Similarity=0.073 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHhhccCC-CEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe----eCCC
Q 028280 12 DVDAARAALLWALQNLLRFG-DVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT----EGDQ 86 (211)
Q Consensus 12 ~s~~s~~al~~A~~la~~~~-a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~----~G~~ 86 (211)
.++...+|++.|+++..+.+ .+++++++.++.... ...+++.++. |.+=-+.+. .|.|
T Consensus 34 iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~---------------~~~lr~aLAm--GaD~avli~d~~~~g~D 96 (256)
T PRK03359 34 ISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTN---------------AKGRKDVLSR--GPDELIVVIDDQFEQAL 96 (256)
T ss_pred cChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhh---------------HHHHHHHHHc--CCCEEEEEecCcccCcC
Confidence 56788999999999999875 899999998863210 0112332222 322222222 2322
Q ss_pred H---HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 87 E---GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 87 ~---~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
+ +..|..++++.++|||++|.....+- .|.+.-.+......|.+
T Consensus 97 ~~~tA~~La~ai~~~~~DLVl~G~~s~D~~--tgqvg~~lAe~Lg~P~v 143 (256)
T PRK03359 97 PQQTASALAAAAQKAGFDLILCGDGSSDLY--AQQVGLLVGEILNIPAI 143 (256)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCC--CCcHHHHHHHHhCCCce
Confidence 3 57788888888999999998665432 34455556666666643
No 25
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=94.33 E-value=1.1 Score=37.11 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=65.3
Q ss_pred cCCHHHHHHHHHHHHhhc-cCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe----eCC
Q 028280 11 EDVDAARAALLWALQNLL-RFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT----EGD 85 (211)
Q Consensus 11 D~s~~s~~al~~A~~la~-~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~----~G~ 85 (211)
..++....|++.|++|.. ..+.+++++++.++.. .+.+...+.. |.+--+.+. .|.
T Consensus 34 ~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a-----------------~~~lr~aLAm--GaDraili~d~~~~~~ 94 (260)
T COG2086 34 SINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA-----------------EEALREALAM--GADRAILITDRAFAGA 94 (260)
T ss_pred ccChhhHHHHHHHHHhhccCCCceEEEEEecchhh-----------------HHHHHHHHhc--CCCeEEEEecccccCc
Confidence 345678999999999999 6999999999987521 1112222222 433222222 233
Q ss_pred CH---HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 86 QE---GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 86 ~~---~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
|+ +..|...++..+.|||++|...-.+- .|.+.-.+....+.|.+
T Consensus 95 d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~--t~qvg~~lAe~Lg~P~~ 142 (260)
T COG2086 95 DPLATAKALAAAVKKIGPDLVLTGKQAIDGD--TGQVGPLLAELLGWPQV 142 (260)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEecccccCC--ccchHHHHHHHhCCcee
Confidence 33 57788888999999999998765432 33444555556666654
No 26
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=94.32 E-value=1.2 Score=34.23 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=61.7
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccC--CCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRF--GDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
+|+|++.+..+|-.++..+.++.... +.++.++|+.......... ..+.+++++..+ |++++..-.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~-----------~~~~~~~~~~~~-~i~~~~~~~ 68 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDE-----------SLEVVERLAEEL-GIELEIVSF 68 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHH-----------HHHHHHHHHHHc-CCceEEEeh
Confidence 58999999999999998888877655 6689999987653321011 112234444443 554444322
Q ss_pred e-------------CC--------CHHHHHHHHHHHhCCCEEEEecCCCCccc
Q 028280 83 E-------------GD--------QEGARIAALVREIGASALVVGLHDRSFLH 114 (211)
Q Consensus 83 ~-------------G~--------~~~~~I~~~a~~~~adLIVmG~~~~~~~~ 114 (211)
. +. .....+.+.|++++++.|+.|.+.....+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~e 121 (185)
T cd01993 69 KEEYTDDIEVKKRGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEAE 121 (185)
T ss_pred hhhcchhhhhhccCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHHH
Confidence 1 00 01245677899999999999988654443
No 27
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=93.94 E-value=1.1 Score=33.94 Aligned_cols=106 Identities=15% Similarity=0.176 Sum_probs=65.6
Q ss_pred eEEEEecC-----CHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEE
Q 028280 5 KIVVIVED-----VDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEI 79 (211)
Q Consensus 5 ~ILv~vD~-----s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~ 79 (211)
+|||-.+- ++.+..++..|.+++...|.+++++.+.+.... .+.+++.+..+ |.+--+
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~----------------~~~l~~~l~~~-G~d~v~ 63 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEA----------------AEALRKALAKY-GADKVY 63 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCH----------------HHHHHHHHHST-TESEEE
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhh----------------HHHHhhhhhhc-CCcEEE
Confidence 46666653 378999999999999999999999998842221 11233333322 444233
Q ss_pred EEeeC----C---CHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 80 IVTEG----D---QEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 80 ~v~~G----~---~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
.+-.. . .....|.+.+++.++|+|++|....+ +.++-++....++|++
T Consensus 64 ~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~g-----~~la~~lA~~L~~~~v 118 (164)
T PF01012_consen 64 HIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSFG-----RDLAPRLAARLGAPLV 118 (164)
T ss_dssp EEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHHH-----HHHHHHHHHHHT-EEE
T ss_pred EecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCCC-----CcHHHHHHHHhCCCcc
Confidence 32221 1 13568889999999999999974322 1255667777777765
No 28
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=93.38 E-value=2.7 Score=34.52 Aligned_cols=96 Identities=14% Similarity=0.149 Sum_probs=63.2
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccC--CCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRF--GDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v 81 (211)
++|+|++.|..+|-..+.++..+.... +-++..+|+....... . .+.++++|++. |+++.+.-
T Consensus 30 ~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~--~------------~~~~~~~~~~l-gI~~~v~~ 94 (258)
T PRK10696 30 DRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGF--P------------EHVLPEYLESL-GVPYHIEE 94 (258)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCC--C------------HHHHHHHHHHh-CCCEEEEE
Confidence 589999999999998888887776544 3478888876432211 1 01245666654 66655432
Q ss_pred ee-----------CCCH--------HHHHHHHHHHhCCCEEEEecCCCCccc
Q 028280 82 TE-----------GDQE--------GARIAALVREIGASALVVGLHDRSFLH 114 (211)
Q Consensus 82 ~~-----------G~~~--------~~~I~~~a~~~~adLIVmG~~~~~~~~ 114 (211)
.. |.++ ...+.++|++.++|.|++|.|.....+
T Consensus 95 ~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~E 146 (258)
T PRK10696 95 QDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDILE 146 (258)
T ss_pred ecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHHH
Confidence 11 1111 245678899999999999998766544
No 29
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=92.72 E-value=2.2 Score=35.52 Aligned_cols=98 Identities=20% Similarity=0.177 Sum_probs=63.8
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEE---EE
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVE---II 80 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~---~~ 80 (211)
.+|+|++.|.++|-.++.....+... -.+.++||...-..... ...+..+.+|... ++... ..
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~v~~~~ 87 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRGYSD-----------QEAELVEKLCEKL-GIPLIVERVT 87 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCCccc-----------hHHHHHHHHHHHh-CCceEEEEEE
Confidence 68999999999999998887777765 79999999876443211 1112244455443 32211 11
Q ss_pred EeeCC------CH--------HHHHHHHHHHhCCCEEEEecCCCCcccc
Q 028280 81 VTEGD------QE--------GARIAALVREIGASALVVGLHDRSFLHK 115 (211)
Q Consensus 81 v~~G~------~~--------~~~I~~~a~~~~adLIVmG~~~~~~~~~ 115 (211)
...+. ++ ...+...|++.++|.|+.|.|.....+.
T Consensus 88 ~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~et 136 (298)
T COG0037 88 DDLGRETLDGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQAET 136 (298)
T ss_pred eeccccccCCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHHHH
Confidence 11111 12 2457788999999999999988776653
No 30
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.19 E-value=1.7 Score=38.79 Aligned_cols=91 Identities=12% Similarity=0.013 Sum_probs=57.7
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHH
Q 028280 11 EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGAR 90 (211)
Q Consensus 11 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~ 90 (211)
|..-....||..|++.|...+..|..+.+.++...... ........+.+..|.+.+++. |+. ..+..|+ +.+.
T Consensus 32 DLRl~DN~aL~~A~~~a~~~~~~vl~vyi~dp~~~~~~---~~r~~Fl~esL~~L~~~L~~~-g~~--L~v~~g~-~~~~ 104 (454)
T TIGR00591 32 DQRVQDNWALIAAQTLALKKKLPLHVCFCLVDFFLAAT---RRHYFFMLGGLDEVANECERL-IIP--FHLLDGP-PKEL 104 (454)
T ss_pred chhccCCHHHHHHHHHHHHcCCCEEEEEEeCCCccccc---HHHHHHHHHHHHHHHHHHHHc-CCc--eEEeecC-hHHH
Confidence 44445567888888777666778999999876432211 111111222233333333332 444 4567899 9999
Q ss_pred HHHHHHHhCCCEEEEecC
Q 028280 91 IAALVREIGASALVVGLH 108 (211)
Q Consensus 91 I~~~a~~~~adLIVmG~~ 108 (211)
|.+.+++++++.|+....
T Consensus 105 l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 105 LPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred HHHHHHHcCCCEEEEecc
Confidence 999999999999999874
No 31
>PRK13820 argininosuccinate synthase; Provisional
Probab=89.91 E-value=8.1 Score=34.00 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=57.5
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCC-EEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGD-VVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a-~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (211)
|+++|+|++.+..+|-.++.|+.+ .+|. +++.+|+....... + .+.+++.|.+. |+++.+.
T Consensus 1 ~~~kVvvA~SGGvDSsvll~lL~e---~~g~~~Viav~vd~g~~~~--e------------~~~a~~~a~~l-Gi~~~vv 62 (394)
T PRK13820 1 MMKKVVLAYSGGLDTSVCVPLLKE---KYGYDEVITVTVDVGQPEE--E------------IKEAEEKAKKL-GDKHYTI 62 (394)
T ss_pred CCCeEEEEEeCcHHHHHHHHHHHH---hcCCCEEEEEEEECCCChH--H------------HHHHHHHHHHc-CCCEEEE
Confidence 578999999999999999988643 3464 89999997542110 0 11123333322 3332221
Q ss_pred Ee-------------------eC--------C-CHHHHHHHHHHHhCCCEEEEecCCC
Q 028280 81 VT-------------------EG--------D-QEGARIAALVREIGASALVVGLHDR 110 (211)
Q Consensus 81 v~-------------------~G--------~-~~~~~I~~~a~~~~adLIVmG~~~~ 110 (211)
-. .| . -....+.++|++.+++.|.-|+.++
T Consensus 63 d~~eef~~~~i~~~i~~n~~~~gYpl~~~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 63 DAKEEFAKDYIFPAIKANALYEGYPLGTALARPLIAEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred eCHHHHHHHHHHHHHHhCccccCCcCcHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 00 11 0 1356788999999999999999665
No 32
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=89.60 E-value=1.1 Score=34.03 Aligned_cols=114 Identities=16% Similarity=0.134 Sum_probs=61.0
Q ss_pred HHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHH
Q 028280 17 RAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVR 96 (211)
Q Consensus 17 ~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~ 96 (211)
-.||..| .+.+..|..+.+.++.................+.+..+.+.+++ ......+..|+ +.+.+.+.++
T Consensus 14 N~aL~~A----~~~~~~v~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~---~g~~L~v~~g~-~~~~l~~l~~ 85 (165)
T PF00875_consen 14 NPALHAA----AQNGDPVLPVFVFDPEEFHPYRIGPRRRRFLLESLADLQESLRK---LGIPLLVLRGD-PEEVLPELAK 85 (165)
T ss_dssp -HHHHHH----HHTTSEEEEEEEE-HHGGTTCSSCHHHHHHHHHHHHHHHHHHHH---TTS-EEEEESS-HHHHHHHHHH
T ss_pred hHHHHHH----HHcCCCeEEEEEecccccccccCcchHHHHHHHHHHHHHHHHHh---cCcceEEEecc-hHHHHHHHHH
Confidence 3455544 55678899999998752111100011111122222333333332 33456778999 9999999999
Q ss_pred HhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCCC
Q 028280 97 EIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 97 ~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
+.+++.|+....-.....+.-.-....+.+.++.+..+....
T Consensus 86 ~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~~~~~ 127 (165)
T PF00875_consen 86 EYGATAVYFNEEYTPYERRRDERVRKALKKHGIKVHTFDDHT 127 (165)
T ss_dssp HHTESEEEEE---SHHHHHHHHHHHHHHHHTTSEEEEE--SS
T ss_pred hcCcCeeEeccccCHHHHHHHHHHHHHHHhcceEEEEECCcE
Confidence 999999998854322211122233345566789998886543
No 33
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=89.53 E-value=5.6 Score=32.56 Aligned_cols=91 Identities=14% Similarity=0.079 Sum_probs=56.1
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
+++++|++.|.-+|-.++.++.+. |.++..+|+..+... . +. .+..+++++.. |++.++.-.
T Consensus 12 ~~~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~~~~~---~--~e--------~~~a~~~a~~l-gi~~~ii~~ 73 (252)
T TIGR00268 12 FKKVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVSPSIS---P--RE--------LEDAIIIAKEI-GVNHEFVKI 73 (252)
T ss_pred cCCEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecCCCCC---H--HH--------HHHHHHHHHHc-CCCEEEEEc
Confidence 578999999999998888877664 667889998643211 0 11 11233444433 444443211
Q ss_pred e-----------------CCCHHHHHHHHHHHhCCCEEEEecCCCC
Q 028280 83 E-----------------GDQEGARIAALVREIGASALVVGLHDRS 111 (211)
Q Consensus 83 ~-----------------G~~~~~~I~~~a~~~~adLIVmG~~~~~ 111 (211)
. .......+.+.|++.+++.|+.|.+...
T Consensus 74 ~~~~~~~~~n~~~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD 119 (252)
T TIGR00268 74 DKMINPFRANVEERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADD 119 (252)
T ss_pred HHHHHHHHhCCCcccchhhHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 1 0112345667888899999999986544
No 34
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=87.09 E-value=13 Score=29.24 Aligned_cols=92 Identities=13% Similarity=0.068 Sum_probs=55.5
Q ss_pred EEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCC
Q 028280 6 IVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGD 85 (211)
Q Consensus 6 ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~ 85 (211)
++|+-.|+...-.+...|..+..+ +.++.++..-.. ... ..++++.+++.. ++++.. ....+
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~-R~g--------------a~eQL~~~a~~l-~vp~~~-~~~~~ 66 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTY-RIG--------------AVEQLKTYAEIL-GVPFYV-ARTES 66 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTS-STH--------------HHHHHHHHHHHH-TEEEEE-SSTTS
T ss_pred EEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCC-Ccc--------------HHHHHHHHHHHh-ccccch-hhcch
Confidence 566777888888899999999887 888888876332 211 112344444433 444333 12233
Q ss_pred CHHHHH---HHHHHHhCCCEEEEecCCCCcccc
Q 028280 86 QEGARI---AALVREIGASALVVGLHDRSFLHK 115 (211)
Q Consensus 86 ~~~~~I---~~~a~~~~adLIVmG~~~~~~~~~ 115 (211)
|+.+.+ ++..+..++|+|++.+.|++....
T Consensus 67 ~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~ 99 (196)
T PF00448_consen 67 DPAEIAREALEKFRKKGYDLVLIDTAGRSPRDE 99 (196)
T ss_dssp CHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHH
T ss_pred hhHHHHHHHHHHHhhcCCCEEEEecCCcchhhH
Confidence 365544 444455679999999999987654
No 35
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=86.20 E-value=3 Score=32.55 Aligned_cols=114 Identities=16% Similarity=0.112 Sum_probs=61.9
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
||+|++++-+|..+..+..+.-.|.+ .|.++.++- .... .+.... +.++.+. +..+.....
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~~-~g~~V~vv~---T~~A-----~~fi~~------~~l~~l~----~~~v~~~~~ 61 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLTK-RGYQVTVLM---TKAA-----TKFITP------LTLQVLS----KNPVHLDVM 61 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHHH-CCCEEEEEE---ChhH-----HHHcCH------HHHHHHh----CCceEeccc
Confidence 68999999999999998888777755 577765443 2111 111110 1122222 222333221
Q ss_pred eCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cc--c-HHHHHHccC--CceEEEEcC
Q 028280 83 EGDQEGARIAALVREIGASALVVGLHDRSFLHK--LA--M-SHNDISSSF--NCRVLAIKQ 136 (211)
Q Consensus 83 ~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~g--s-~a~~vl~~a--~~PVLvV~~ 136 (211)
... .........-...+|++|+-.-.-+.+.+ .| + ....++... ++||++++.
T Consensus 62 ~~~-~~~~~~hi~l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pa 121 (182)
T PRK07313 62 DEH-DPKLMNHIELAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPA 121 (182)
T ss_pred ccc-ccCCccccccccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEEC
Confidence 111 11111111122468999998887777766 33 2 222333344 899999985
No 36
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=86.18 E-value=12 Score=31.68 Aligned_cols=95 Identities=12% Similarity=0.062 Sum_probs=60.1
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
|.++++++.+..+|-..|..+.......+-.+.++|+-..... .. .. +...++++++ |+++.+...
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~F--pE---t~--------ef~d~~a~~~-gl~l~v~~~ 92 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKF--PE---MI--------EFRDRRAKEL-GLELIVHSN 92 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCC--HH---HH--------HHHHHHHHHh-CCCEEEEeC
Confidence 6789999999999999888887665543557889999765432 11 11 1122233333 555554321
Q ss_pred -----eCCC-----H--------HHHHHHHHHHhCCCEEEEecCCCC
Q 028280 83 -----EGDQ-----E--------GARIAALVREIGASALVVGLHDRS 111 (211)
Q Consensus 83 -----~G~~-----~--------~~~I~~~a~~~~adLIVmG~~~~~ 111 (211)
.|.. . ...+.++++++++|.++.|.+...
T Consensus 93 ~~~i~~g~~~~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE 139 (301)
T PRK05253 93 PEGIARGINPFRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDE 139 (301)
T ss_pred hHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccch
Confidence 1110 1 255778888899999999988653
No 37
>PLN00200 argininosuccinate synthase; Provisional
Probab=85.44 E-value=26 Score=31.04 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=31.3
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
|+++|+|++.+.-+|-.++.|+.+ ..|.+++.+|+...
T Consensus 4 ~~~kVvva~SGGlDSsvla~~L~e---~~G~eViav~id~G 41 (404)
T PLN00200 4 KLNKVVLAYSGGLDTSVILKWLRE---NYGCEVVCFTADVG 41 (404)
T ss_pred CCCeEEEEEeCCHHHHHHHHHHHH---hhCCeEEEEEEECC
Confidence 467999999999999999988865 24778999998765
No 38
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=84.51 E-value=13 Score=33.20 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=44.8
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhh-ccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE
Q 028280 4 KKIVVIVEDVDAARAALLWALQNL-LRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la-~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (211)
++|+|++.|..+|-..+.....+. ...+-++.++||...-... ..+..+..+++|++. |+++.+.
T Consensus 16 ~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~-----------s~~~~~~~~~~~~~l-~i~~~~~ 81 (436)
T PRK10660 16 RQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPN-----------ADSWVKHCEQVCQQW-QVPLVVE 81 (436)
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcc-----------hHHHHHHHHHHHHHc-CCcEEEE
Confidence 689999999999988887776654 2356799999997543321 111234467777765 7776664
No 39
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=83.39 E-value=19 Score=28.01 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=54.9
Q ss_pred EEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee--
Q 028280 6 IVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE-- 83 (211)
Q Consensus 6 ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~-- 83 (211)
|+|++.|..+|-.++.++.... +.++..+|+...... . . ..+.++++|+.. |++..+.-..
T Consensus 1 vvva~SGG~DS~~ll~ll~~~~---~~~v~~v~vd~g~~~---~--~--------~~~~~~~~a~~l-gi~~~~~~~~~~ 63 (202)
T cd01990 1 VAVAFSGGVDSTLLLKAAVDAL---GDRVLAVTATSPLFP---R--R--------ELEEAKRLAKEI-GIRHEVIETDEL 63 (202)
T ss_pred CEEEccCCHHHHHHHHHHHHHh---CCcEEEEEeCCCCCC---H--H--------HHHHHHHHHHHc-CCcEEEEeCCcc
Confidence 5788999999988887776653 237888888754321 0 1 112234444443 4444432111
Q ss_pred ----------------CCCHHHHHHHHHHHhCCCEEEEecCCCCccc
Q 028280 84 ----------------GDQEGARIAALVREIGASALVVGLHDRSFLH 114 (211)
Q Consensus 84 ----------------G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~ 114 (211)
..-....+.++|++.+++.|+.|.+....++
T Consensus 64 ~~~~~~~~~~~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e 110 (202)
T cd01990 64 DDPEFAKNPPDRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGD 110 (202)
T ss_pred ccHHHhcCCCCccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcc
Confidence 0112346678889999999999987654443
No 40
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=83.00 E-value=6.7 Score=34.56 Aligned_cols=114 Identities=17% Similarity=0.104 Sum_probs=65.4
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (211)
|..++|++++-+|-.+..++.+.-.|.+ .|.++.++- ... ....... +.++.+. +.++-..
T Consensus 4 l~~k~IllgvTGsiaa~k~~~lv~~L~~-~g~~V~vv~---T~~-----A~~fi~~------~~l~~l~----~~~V~~~ 64 (399)
T PRK05579 4 LAGKRIVLGVSGGIAAYKALELVRRLRK-AGADVRVVM---TEA-----AKKFVTP------LTFQALS----GNPVSTD 64 (399)
T ss_pred CCCCeEEEEEeCHHHHHHHHHHHHHHHh-CCCEEEEEE---CHh-----HHHHHhH------HHHHHhh----CCceEcc
Confidence 3468999999999999999888777754 677755443 211 1111111 1133332 2222222
Q ss_pred EeeCC--CHHHHHHHHHHHhCCCEEEEecCCCCcccc--cc---cHHHHHHccCCceEEEEcC
Q 028280 81 VTEGD--QEGARIAALVREIGASALVVGLHDRSFLHK--LA---MSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 81 v~~G~--~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~g---s~a~~vl~~a~~PVLvV~~ 136 (211)
..... ...+.| +.++ .+|++|+..-.-+.+.+ .| +....++..+.+||++++.
T Consensus 65 ~~~~~~~~~~~hi-~l~~--~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pa 124 (399)
T PRK05579 65 LWDPAAEAAMGHI-ELAK--WADLVLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPA 124 (399)
T ss_pred ccccccCCCcchh-hccc--ccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeC
Confidence 11111 011222 2222 58999999888777766 33 2555566677999999983
No 41
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=82.80 E-value=12 Score=33.72 Aligned_cols=90 Identities=14% Similarity=0.031 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHH
Q 028280 12 DVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARI 91 (211)
Q Consensus 12 ~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I 91 (211)
..-..-.||..|++ .+..|..+.+.++.................+.+..+.+.+++. |+. ..+..|+ +.+.|
T Consensus 11 LRl~DN~AL~~A~~----~~~~vl~vfi~dp~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~-G~~--L~v~~G~-p~~vl 82 (471)
T TIGR03556 11 LRLSDNIGLAAARQ----QSAKVVGLFCLDPNILQADDMAPARVAYLIGCLQELQQRYQQA-GSQ--LLILQGD-PVQLI 82 (471)
T ss_pred CCcchHHHHHHHHh----cCCCEEEEEEEchhhhccccCCHHHHHHHHHHHHHHHHHHHHC-CCC--eEEEECC-HHHHH
Confidence 33344566766664 3467888998876321110000000111222233333333332 444 4667899 99999
Q ss_pred HHHHHHhCCCEEEEecCC
Q 028280 92 AALVREIGASALVVGLHD 109 (211)
Q Consensus 92 ~~~a~~~~adLIVmG~~~ 109 (211)
.+.+++.+++.|+.-..-
T Consensus 83 ~~l~~~~~~~~V~~~~~~ 100 (471)
T TIGR03556 83 PQLAQQLGAKAVYWNLDV 100 (471)
T ss_pred HHHHHHcCCCEEEEeccc
Confidence 999999999999976543
No 42
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=82.54 E-value=13 Score=25.56 Aligned_cols=77 Identities=14% Similarity=0.193 Sum_probs=52.2
Q ss_pred EEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCC
Q 028280 6 IVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGD 85 (211)
Q Consensus 6 ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~ 85 (211)
|+|++.+..+|-..+..+... +.++.++|+...... . ....++.+++ .
T Consensus 1 v~v~~SGG~DS~~ll~~l~~~----~~~~~~~~~~~~~~~---~------------~~~~~~~~~~-------------~ 48 (103)
T cd01986 1 VLVAFSGGKDSSVAAALLKKL----GYQVIAVTVDHGISP---R------------LEDAKEIAKE-------------A 48 (103)
T ss_pred CEEEEeCcHHHHHHHHHHHHh----CCCEEEEEEcCCCcc---c------------HHHHHHHHHH-------------H
Confidence 578899999988887776664 237889998765332 0 0112222221 4
Q ss_pred CHHHHHHHHHHHhCCCEEEEecCCCCcccc
Q 028280 86 QEGARIAALVREIGASALVVGLHDRSFLHK 115 (211)
Q Consensus 86 ~~~~~I~~~a~~~~adLIVmG~~~~~~~~~ 115 (211)
..+.+.+.|++.+++.|+.|.+.....+.
T Consensus 49 -r~~~~~~~a~~~g~~~i~~g~~~~D~~~~ 77 (103)
T cd01986 49 -REEAAKRIAKEKGAETIATGTRRDDVANR 77 (103)
T ss_pred -HHHHHHHHHHHcCCCEEEEcCCcchHHHH
Confidence 67888889999999999999877665543
No 43
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=81.72 E-value=19 Score=31.84 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=61.2
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccc------hHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeC
Q 028280 11 EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRN------RKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (211)
Q Consensus 11 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G 84 (211)
|..-..-.||..|++. +..|..|.|.++..... ............+.++.+.+.+++. |+. ..+..|
T Consensus 10 DLRl~DN~aL~~A~~~----~~~vl~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~-g~~--L~v~~G 82 (429)
T TIGR02765 10 DLRVHDNPALYKASSS----SDTLIPLYCFDPRQFKLTHFFGFPKTGPARGKFLLESLKDLRTSLRKL-GSD--LLVRSG 82 (429)
T ss_pred CCccccHHHHHHHHhc----CCeEEEEEEECchHhccccccccCCCCHHHHHHHHHHHHHHHHHHHHc-CCC--eEEEeC
Confidence 3334455677766644 34688888887632110 0000111111222233333333332 444 456789
Q ss_pred CCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEE
Q 028280 85 DQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 85 ~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV 134 (211)
+ +.+.|.+.+++.+++.|+.-..-.....+.-....+.+...+|++..+
T Consensus 83 ~-~~~vl~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~ 131 (429)
T TIGR02765 83 K-PEDVLPELIKELGVRTVFLHQEVGSEEKSVERLLQQALARLGIHVEQH 131 (429)
T ss_pred C-HHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHHHhcCceEEEe
Confidence 9 999999999999999999886533322111111223344556776433
No 44
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=80.58 E-value=12 Score=29.08 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=59.0
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
|+|++++-+|..+..+..+.-.|.+ .|.++.++- .... ...... ..++.+. +.++.+.+..
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~-~g~~V~vi~---T~~A-----~~fi~~------~~l~~l~----~~~v~~~~~~ 61 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTK-LGYDVTVLM---TQAA-----TQFITP------LTLQVLS----KNPVHLDVMD 61 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHH-CCCEEEEEE---ChHH-----HhhccH------hhHHHHh----CCCeEeeccc
Confidence 6899999999999988876666644 577755433 2110 011110 0122222 3333333222
Q ss_pred CCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cc--c-HHHHHHccC--CceEEEEcC
Q 028280 84 GDQEGARIAALVREIGASALVVGLHDRSFLHK--LA--M-SHNDISSSF--NCRVLAIKQ 136 (211)
Q Consensus 84 G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~g--s-~a~~vl~~a--~~PVLvV~~ 136 (211)
..+. +.+....-...+|++|+..-.-+.+.+ .| . ....++... .+||++++.
T Consensus 62 ~~~~-~~~~hi~l~~~aD~~vVaPaSanTlakiA~GiaDnLlt~~a~a~~~~~pv~i~Pa 120 (177)
T TIGR02113 62 EHDP-KVINHIELAKKADLFLVAPASANTIAHLAHGFADNIVTSVALALPPETPKLIAPA 120 (177)
T ss_pred cccC-CCcccceechhhCEEEEEeCCHHHHHHHHcCcCCcHHHHHHHHcCCCCCEEEEeC
Confidence 1101 111122222357999998877776666 22 2 222333333 799999984
No 45
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=80.39 E-value=9.6 Score=36.56 Aligned_cols=101 Identities=22% Similarity=0.225 Sum_probs=58.5
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccch----HHHHHHHHHHHHHHHHH-HHHHhhhCCCcEE-
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNR----KKLRLLRLKGYQLALSF-KDICNDFFNTNVE- 78 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~----~~~~~~~~~~~~~~~~l-~~~~~~~~~i~~~- 78 (211)
+|.+..=+.++.+.|+.++..++.+.+..+++++.++....... .......+ .....+ +...+...++...
T Consensus 616 ~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~i~~~~ 692 (769)
T KOG1650|consen 616 KVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQ---EGLEDFVKSTRESNLDIIYAE 692 (769)
T ss_pred EEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccchhhcccccchhhhhhhh---hHHHHHHHHhhhchhhhhhhh
Confidence 56666668888889999999999999999999999986543211 11111111 111111 1111111122222
Q ss_pred -EEEeeCCCHHHHHHHHHHHhCCCEEEEecCCC
Q 028280 79 -IIVTEGDQEGARIAALVREIGASALVVGLHDR 110 (211)
Q Consensus 79 -~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~ 110 (211)
-.+..|. ..-.+++...+ +.||.++|....
T Consensus 693 ek~v~~~~-et~~~~~~~~~-~ydL~ivGr~~~ 723 (769)
T KOG1650|consen 693 EKIVLNGA-ETTALLRSITE-DYDLFIVGRSHG 723 (769)
T ss_pred HHHHhcch-hHHHHHHHhcc-ccceEEEecccc
Confidence 3345566 44555555554 789999998644
No 46
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=79.29 E-value=8.8 Score=34.63 Aligned_cols=112 Identities=16% Similarity=0.114 Sum_probs=65.4
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
-++|++++-+|-.+..++.++-.|.+ .|.++.++-. .... +.... ..++.+. +..+-+...
T Consensus 70 ~k~IllgVtGsIAayka~~lvr~L~k-~G~~V~VvmT---~sA~-----~fv~p------~~~~~ls----~~~V~~d~~ 130 (475)
T PRK13982 70 SKRVTLIIGGGIAAYKALDLIRRLKE-RGAHVRCVLT---KAAQ-----QFVTP------LTASALS----GQRVYTDLF 130 (475)
T ss_pred CCEEEEEEccHHHHHHHHHHHHHHHh-CcCEEEEEEC---cCHH-----HHhhH------HHHHHhc----CCceEecCC
Confidence 58999999999999999999888865 5777555442 2110 11111 0122222 333333222
Q ss_pred eCCC--HHHHHHHHHHHhCCCEEEEecCCCCcccc--cc--c-HHHHHHccCCceEEEEcC
Q 028280 83 EGDQ--EGARIAALVREIGASALVVGLHDRSFLHK--LA--M-SHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 83 ~G~~--~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~g--s-~a~~vl~~a~~PVLvV~~ 136 (211)
...+ .... ++.++ .+|++|+..-.-+.+.+ .| . ....++....+||++++.
T Consensus 131 ~~~~~~~~~H-i~la~--~aD~~vVAPATANTIAKiA~GiADnLlt~v~La~~~PvliaPa 188 (475)
T PRK13982 131 DPESEFDAGH-IRLAR--DCDLIVVAPATADLMAKMANGLADDLASAILLAANRPILLAPA 188 (475)
T ss_pred CcccccCccc-hhhhh--hcCEEEEeeCCHHHHHHHHccccCcHHHHHHHhcCCCEEEEEc
Confidence 1110 1112 23333 48999999888777766 33 2 445566678999999986
No 47
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=78.93 E-value=22 Score=27.12 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=44.7
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHH---HHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALV---REIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a---~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
....++++ |++++..+..-....+.+.+++ ++.+++.+|.++.....+ +.-+...+..||+-|+..
T Consensus 17 a~~~L~~~-gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~L------pgvva~~t~~PVIgvP~~ 85 (156)
T TIGR01162 17 AADILEEF-GIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHL------PGMVAALTPLPVIGVPVP 85 (156)
T ss_pred HHHHHHHc-CCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchh------HHHHHhccCCCEEEecCC
Confidence 34444444 8999998877554555555555 456789988888665443 335677889999999864
No 48
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=78.21 E-value=28 Score=26.63 Aligned_cols=103 Identities=18% Similarity=0.245 Sum_probs=59.0
Q ss_pred eEEEEec---------CCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 028280 5 KIVVIVE---------DVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNT 75 (211)
Q Consensus 5 ~ILv~vD---------~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i 75 (211)
+|+|.++ ..+.+..++..|.+++. .+..+.++.+.+... +. .+..... + |.
T Consensus 1 ~ilV~~e~~~~~~~~~l~~~~~e~l~~A~~l~~-~~~~v~~v~~G~~~~-------~~----------~~~~~~~-~-Ga 60 (181)
T cd01985 1 KILVLVEHVPDTAELVLNPLDLEAVEAALRLKE-YGGEVTALVIGPPAA-------EV----------ALREALA-M-GA 60 (181)
T ss_pred CEEEEEEEEcCCCccccCHhhHHHHHHHHHHhh-cCCeEEEEEECChHH-------HH----------HHHHHHH-h-CC
Confidence 4666666 56678899999999877 567777777654210 00 0111111 1 43
Q ss_pred cEEEEEee----CCCH---HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 76 NVEIIVTE----GDQE---GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 76 ~~~~~v~~----G~~~---~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
+--..+.. +.++ ...|.+.+++.++|+|++|....+. .++-++..+.++|++
T Consensus 61 d~v~~~~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~~g~-----~la~rlA~~L~~~~v 119 (181)
T cd01985 61 DKVLLVEDPALAGYDPEATAKALAALIKKEKPDLILAGATSIGK-----QLAPRVAALLGVPQI 119 (181)
T ss_pred CEEEEEecCcccCCChHHHHHHHHHHHHHhCCCEEEECCccccc-----CHHHHHHHHhCCCcc
Confidence 32222211 1112 5778888888899999999876632 234455555555443
No 49
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=77.70 E-value=5.6 Score=29.54 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCC-Cccc----c-cccHHHHHHccCCceEEEEcCCC
Q 028280 87 EGARIAALVREIGASALVVGLHDR-SFLH----K-LAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~-~~~~----~-~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
..+.|.+++++++++.||+|-.-. ++.. . .-..++.+-...++||..+-+..
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPVVLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 478999999999999999995432 2221 1 33456666666689999986543
No 50
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=77.65 E-value=2.4 Score=29.76 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecC
Q 028280 87 EGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~ 108 (211)
-.++|+++|+++++||+|+|..
T Consensus 50 d~~~l~~~a~~~~idlvvvGPE 71 (100)
T PF02844_consen 50 DPEELADFAKENKIDLVVVGPE 71 (100)
T ss_dssp -HHHHHHHHHHTTESEEEESSH
T ss_pred CHHHHHHHHHHcCCCEEEECCh
Confidence 5899999999999999999983
No 51
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=76.86 E-value=13 Score=29.14 Aligned_cols=113 Identities=12% Similarity=-0.013 Sum_probs=58.1
Q ss_pred CeEEEEecCCHHHHHHH-HHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHH--HHHHHHHHHHHHhhhCCCcEEEE
Q 028280 4 KKIVVIVEDVDAARAAL-LWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLK--GYQLALSFKDICNDFFNTNVEII 80 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al-~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~i~~~~~ 80 (211)
++|++++-||-.+..+. ...-.| .+.|++++++-.- ... ...... ..+....++.+. |..+...
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L-~~~g~~V~vI~S~---~A~-----~~~~~~g~~~~~i~~l~~~t----g~~v~~~ 67 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKL-VDEGAEVTPIVSE---TVQ-----TTDTRFGKGADWIKKIEEIT----GRPAINT 67 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHH-HhCcCEEEEEEch---hHH-----HHHHHcCChHHHHHHHHHHH----CCCCEEE
Confidence 68999999999999997 554444 5568776554321 110 000000 011112233333 2222222
Q ss_pred EeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cc--c-HHH---HHHccCCceEEEEcC
Q 028280 81 VTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LA--M-SHN---DISSSFNCRVLAIKQ 136 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~g--s-~a~---~vl~~a~~PVLvV~~ 136 (211)
+...+ +... ...+|.+|+..-.-+.+.+ .| + ... .+.-+-.+||++++.
T Consensus 68 ~~~~~-~~~~------s~~~D~mVIaPcTanTLAKiA~GiaDnlv~~aa~a~Lke~rPlvlaPa 124 (187)
T TIGR02852 68 IVEAE-PFGP------KVPLDCMVIAPLTGNSMSKLANAMTDSPVLMAAKATLRNNKPVVLAIS 124 (187)
T ss_pred CCCCc-ccCC------chhhCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcCCCCEEEEEC
Confidence 21222 2111 2457888888877666665 23 2 222 222234799999976
No 52
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=75.88 E-value=26 Score=27.48 Aligned_cols=94 Identities=18% Similarity=0.126 Sum_probs=50.7
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G 84 (211)
++++++.+..+|-.++.++.+ .|-++..|++..+........ .. .-.+.++..++.. |++....-..+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~----~G~~v~~l~~~~~~~~~~~~~-h~------~~~e~~~~~A~~l-gipl~~i~~~~ 68 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE----EGHEVVALLNLTPEEGSSMMY-HT------VNHELLELQAEAM-GIPLIRIEISG 68 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCEEEEEEEEecCCCCcccc-cc------cCHHHHHHHHHHc-CCcEEEEeCCC
Confidence 478899999999998888877 356677777664332111000 00 0111233334333 66655443222
Q ss_pred C------CHHHHHHHHHHHhCCCEEEEecCCCC
Q 028280 85 D------QEGARIAALVREIGASALVVGLHDRS 111 (211)
Q Consensus 85 ~------~~~~~I~~~a~~~~adLIVmG~~~~~ 111 (211)
+ +..+.+.+.+++ +++.||-|..-..
T Consensus 69 ~~e~~~~~l~~~l~~~~~~-g~~~vv~G~i~sd 100 (194)
T cd01994 69 EEEDEVEDLKELLRKLKEE-GVDAVVFGAILSE 100 (194)
T ss_pred CchHHHHHHHHHHHHHHHc-CCCEEEECccccH
Confidence 1 122333344344 6999999987543
No 53
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=74.95 E-value=28 Score=26.50 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=44.1
Q ss_pred HHHHhhhCCCcEEEEEeeCCCHHHHHHHHH---HHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 66 KDICNDFFNTNVEIIVTEGDQEGARIAALV---REIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 66 ~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a---~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
.+.++++ |++++..|.......+.+.+|+ ++.+...||-|+.+.--+- | -+...++.||+=|+-.
T Consensus 22 a~~L~~f-gi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLP--G----mvAa~T~lPViGVPv~ 89 (162)
T COG0041 22 AEILEEF-GVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLP--G----MVAAKTPLPVIGVPVQ 89 (162)
T ss_pred HHHHHHc-CCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcc--h----hhhhcCCCCeEeccCc
Confidence 3444444 9999999888664555555555 5567888999987643332 2 3456778999999754
No 54
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=74.95 E-value=33 Score=25.80 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=51.7
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G 84 (211)
+|+|++-+..+|-.++.++.. .+.++..+|+...... . ... +.++.+++.. |... ...+
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~----~~~~v~~~~~~~~~~~--~---~~~--------~~~~~~~~~~-g~~~---~~~~ 59 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKK----EGYEVHALSFDYGQRH--A---KEE--------EAAKLIAEKL-GPST---YVPA 59 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHH----cCCcEEEEEEECCCCC--h---hHH--------HHHHHHHHHH-CCCE---EEeC
Confidence 578999999999888877654 2557888988753221 0 000 1122233322 2111 1222
Q ss_pred CCH--HHHHHHHHHHhCCCEEEEecCCCC
Q 028280 85 DQE--GARIAALVREIGASALVVGLHDRS 111 (211)
Q Consensus 85 ~~~--~~~I~~~a~~~~adLIVmG~~~~~ 111 (211)
.+. ...+.++|++.+++.|++|.+...
T Consensus 60 ~~~~~~~~l~~~a~~~g~~~i~~G~~~~d 88 (169)
T cd01995 60 RNLIFLSIAAAYAEALGAEAIIIGVNAED 88 (169)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeeccCc
Confidence 322 245677889999999999998755
No 55
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=74.43 E-value=51 Score=28.66 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=28.3
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
.++|+++.|.-+|-.|+.++.. .|.++..+|+...
T Consensus 173 ~kvlvllSGGiDS~vaa~ll~k----rG~~V~av~~~~~ 207 (371)
T TIGR00342 173 GKVLALLSGGIDSPVAAFMMMK----RGCRVVAVHFFNE 207 (371)
T ss_pred CeEEEEecCCchHHHHHHHHHH----cCCeEEEEEEeCC
Confidence 5899999999998888876644 3789999999844
No 56
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=73.80 E-value=22 Score=30.03 Aligned_cols=64 Identities=9% Similarity=0.065 Sum_probs=40.5
Q ss_pred hCCCcEEE--EEeeCCCHHHHHHHHHHHh-------CCCEEEEecCCCCcccc---ccc--HHHHHHccCCceEEEEcCC
Q 028280 72 FFNTNVEI--IVTEGDQEGARIAALVREI-------GASALVVGLHDRSFLHK---LAM--SHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 72 ~~~i~~~~--~v~~G~~~~~~I~~~a~~~-------~adLIVmG~~~~~~~~~---~gs--~a~~vl~~a~~PVLvV~~~ 137 (211)
.+.+++.. ..+.|++....|+...+.. ++|+||++..|-+. +. |-+ ++. -+..+++||+.-=.+
T Consensus 39 ~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~-eDL~~FN~e~var-ai~~~~~PvisaIGH 116 (319)
T PF02601_consen 39 NPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSI-EDLWAFNDEEVAR-AIAASPIPVISAIGH 116 (319)
T ss_pred CCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCCh-HHhcccChHHHHH-HHHhCCCCEEEecCC
Confidence 44444443 3466887788888776664 38999999766553 33 443 443 446788998865443
No 57
>PRK08227 autoinducer 2 aldolase; Validated
Probab=73.25 E-value=51 Score=27.37 Aligned_cols=102 Identities=11% Similarity=0.129 Sum_probs=57.6
Q ss_pred HHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCC------HHHHHH
Q 028280 19 ALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQ------EGARIA 92 (211)
Q Consensus 19 al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~------~~~~I~ 92 (211)
.+-...+-|.+.|+.=..+|++..... +...-+.+.++.+.|+++ |+.+-...-.|.+ ......
T Consensus 95 ~l~~sVeeAvrlGAdAV~~~v~~Gs~~---------E~~~l~~l~~v~~ea~~~-G~Plla~~prG~~~~~~~~~ia~aa 164 (264)
T PRK08227 95 AVAVDMEDAVRLNACAVAAQVFIGSEY---------EHQSIKNIIQLVDAGLRY-GMPVMAVTAVGKDMVRDARYFSLAT 164 (264)
T ss_pred cceecHHHHHHCCCCEEEEEEecCCHH---------HHHHHHHHHHHHHHHHHh-CCcEEEEecCCCCcCchHHHHHHHH
Confidence 333345556667777777777764211 111111223355556554 7665553333321 233445
Q ss_pred HHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCCC
Q 028280 93 ALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 93 ~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
+.+.+.+||+|=+-..+ ..+ .+++..+++||++--.+.
T Consensus 165 RiaaELGADiVK~~y~~-~~f-------~~vv~a~~vPVviaGG~k 202 (264)
T PRK08227 165 RIAAEMGAQIIKTYYVE-EGF-------ERITAGCPVPIVIAGGKK 202 (264)
T ss_pred HHHHHHcCCEEecCCCH-HHH-------HHHHHcCCCcEEEeCCCC
Confidence 67778999999777654 222 378889999999875543
No 58
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=72.93 E-value=38 Score=25.59 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=41.4
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHh---CCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREI---GASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~---~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
....++++ |+.++..+..-....+.+.+++++. +++.+|.++.....+ +.-+.-.+.+||+-|+..
T Consensus 19 a~~~L~~~-gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~L------pgvva~~t~~PVIgvP~~ 87 (150)
T PF00731_consen 19 AAKTLEEF-GIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAAL------PGVVASLTTLPVIGVPVS 87 (150)
T ss_dssp HHHHHHHT-T-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--H------HHHHHHHSSS-EEEEEE-
T ss_pred HHHHHHHc-CCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccc------hhhheeccCCCEEEeecC
Confidence 44455554 8999998887665667777777764 578888887654433 334667789999999754
No 59
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=72.11 E-value=13 Score=32.81 Aligned_cols=66 Identities=20% Similarity=0.317 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHH
Q 028280 12 DVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARI 91 (211)
Q Consensus 12 ~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I 91 (211)
+|..-++||.|++.. ...+.-+++.+..+.... ...+ -++++. . -.+.|
T Consensus 7 GsGgREHAiA~~la~----s~~v~~~~~apgN~G~a~-----------------~~~~---~~~~~~------~-~~~~l 55 (428)
T COG0151 7 GSGGREHALAWKLAQ----SPLVLYVYVAPGNPGTAL-----------------EAYL---VNIEID------T-DHEAL 55 (428)
T ss_pred cCCchHHHHHHHHhc----CCceeEEEEeCCCCccch-----------------hhhh---ccCccc------c-CHHHH
Confidence 556668899998765 345556666665432210 0000 011111 2 36888
Q ss_pred HHHHHHhCCCEEEEecC
Q 028280 92 AALVREIGASALVVGLH 108 (211)
Q Consensus 92 ~~~a~~~~adLIVmG~~ 108 (211)
+++|+++++||+|+|.-
T Consensus 56 v~fA~~~~idl~vVGPE 72 (428)
T COG0151 56 VAFAKEKNVDLVVVGPE 72 (428)
T ss_pred HHHHHHcCCCEEEECCc
Confidence 99999999999999874
No 60
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=72.07 E-value=17 Score=32.03 Aligned_cols=114 Identities=12% Similarity=0.033 Sum_probs=65.0
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v 81 (211)
.-|+||+++.+|-.+..++..+..|-+ .|+++.++-.-.......+. .++.+.. +..+. .
T Consensus 3 ~~k~ill~v~gsiaayk~~~l~r~L~~-~ga~v~vvmt~~a~~fv~p~--------------~~~~~s~---~~v~t--~ 62 (392)
T COG0452 3 EGKRILLGVTGSIAAYKSVELVRLLRR-SGAEVRVVMTESARKFITPL--------------TFQALSG---NPVYT--L 62 (392)
T ss_pred CCceEEEEecCchhhhhHHHHHHHHhh-CCCeeEEEcchhhhhhcCcc--------------cHHHhhC---CCccc--c
Confidence 457999999999999998876555554 78887776554322211111 1222221 11112 2
Q ss_pred eeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc----ccc-HHHHHHccCCceEEEEcC
Q 028280 82 TEGDQEGARIAALVREIGASALVVGLHDRSFLHK----LAM-SHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 82 ~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~----~gs-~a~~vl~~a~~PVLvV~~ 136 (211)
.+.. ....+....-...+|++++.....+.+.+ ++. .....+..+.||+++.+.
T Consensus 63 ~~~~-~~~~~~HI~l~~~adl~lvaPaTan~i~Kla~g~aD~~~t~~~~a~~~p~~~aPa 121 (392)
T COG0452 63 LDEE-LTGSVEHIELARWADLLLVAPATANTIAKLAVGIADNLSTTTLLAAKAPLVLAPA 121 (392)
T ss_pred cccc-ccccccHhhhhhccCEEEecCCChhHHHHHHHhhhccHHHHHHHHhcCcEEEecC
Confidence 2222 22222222222268999998888777766 333 444555667779999875
No 61
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=71.43 E-value=38 Score=24.90 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=27.2
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
+|+|++.|..+|-..+..+.+..... .++.++|+...
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg 37 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTG 37 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCC
Confidence 57899999999988887776655432 46788888654
No 62
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=71.40 E-value=63 Score=27.44 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=28.6
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~ 43 (211)
++++|++.|.-+|-.++.++... .|.+++.+|+....
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~---~G~~v~av~vd~G~ 53 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRA---IGDRLTCVFVDHGL 53 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHH---hCCCEEEEEEeCCC
Confidence 68999999998888777666543 36789999998653
No 63
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=70.97 E-value=29 Score=28.15 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=26.9
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
++++..+. +.++.+. ++|. +..+-+..+.+.++|.+|+|+.
T Consensus 169 lr~~~~~~-~~~~~Ie-VDGG-I~~~ti~~l~~aGaD~~V~GSa 209 (228)
T PRK08091 169 VENRLGNR-RVEKLIS-IDGS-MTLELASYLKQHQIDWVVSGSA 209 (228)
T ss_pred HHHHHHhc-CCCceEE-EECC-CCHHHHHHHHHCCCCEEEEChh
Confidence 44444332 5554443 6677 6666666777889999999964
No 64
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=70.80 E-value=29 Score=28.00 Aligned_cols=41 Identities=15% Similarity=0.268 Sum_probs=26.7
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
++++..+. +.++.+. ++|. +..+-+..+.+.++|.+|+|+.
T Consensus 161 l~~~~~~~-~~~~~Ie-VDGG-I~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 161 IRKKIDAL-GKPIRLE-IDGG-VKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred HHHHHHhc-CCCeeEE-EECC-CCHHHHHHHHHcCCCEEEEChh
Confidence 44444332 4444444 5666 6666666777889999999964
No 65
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=70.70 E-value=75 Score=28.02 Aligned_cols=34 Identities=18% Similarity=0.158 Sum_probs=28.3
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
+|++++.+.-+|-.++.|+.+. |.+++.+|+...
T Consensus 1 kVvla~SGGlDSsvll~~l~e~----g~~V~av~id~G 34 (394)
T TIGR00032 1 KVVLAYSGGLDTSVCLKWLREK----GYEVIAYTADVG 34 (394)
T ss_pred CEEEEEcCCHHHHHHHHHHHHc----CCEEEEEEEecC
Confidence 5889999999999998887653 788999999764
No 66
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=70.02 E-value=72 Score=27.52 Aligned_cols=91 Identities=15% Similarity=0.055 Sum_probs=54.1
Q ss_pred EEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCC
Q 028280 6 IVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGD 85 (211)
Q Consensus 6 ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~ 85 (211)
.+|+|+|+...-..-..|..+-. .|-++.+... +. .+. .+-++++.|.++. |+++-..- .|.
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~-~g~~VllaA~-DT-----------FRA---aAiEQL~~w~er~-gv~vI~~~-~G~ 204 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQ-QGKSVLLAAG-DT-----------FRA---AAIEQLEVWGERL-GVPVISGK-EGA 204 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHH-CCCeEEEEec-ch-----------HHH---HHHHHHHHHHHHh-CCeEEccC-CCC
Confidence 35667777766666555555543 4555544332 11 111 1234466666653 66655532 677
Q ss_pred CHHHHH---HHHHHHhCCCEEEEecCCCCccc
Q 028280 86 QEGARI---AALVREIGASALVVGLHDRSFLH 114 (211)
Q Consensus 86 ~~~~~I---~~~a~~~~adLIVmG~~~~~~~~ 114 (211)
||+..+ +++|+..++|.|++.+-||-.-.
T Consensus 205 DpAaVafDAi~~Akar~~DvvliDTAGRLhnk 236 (340)
T COG0552 205 DPAAVAFDAIQAAKARGIDVVLIDTAGRLHNK 236 (340)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeCcccccCc
Confidence 787654 46677889999999999875443
No 67
>PRK10867 signal recognition particle protein; Provisional
Probab=69.78 E-value=83 Score=28.14 Aligned_cols=92 Identities=13% Similarity=0.018 Sum_probs=54.6
Q ss_pred EEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCC
Q 028280 6 IVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGD 85 (211)
Q Consensus 6 ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~ 85 (211)
++++.-++..+..+...|..+....|.++.++..-...+ . ..++++.+++. .++++...- .+.
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~----a-----------a~eQL~~~a~~-~gv~v~~~~-~~~ 166 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP----A-----------AIEQLKTLGEQ-IGVPVFPSG-DGQ 166 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch----H-----------HHHHHHHHHhh-cCCeEEecC-CCC
Confidence 344556777888888888888876577777765533211 0 11223444443 255543321 222
Q ss_pred CHHH---HHHHHHHHhCCCEEEEecCCCCccc
Q 028280 86 QEGA---RIAALVREIGASALVVGLHDRSFLH 114 (211)
Q Consensus 86 ~~~~---~I~~~a~~~~adLIVmG~~~~~~~~ 114 (211)
+|.+ ..++.++..++|+|++.+.|+....
T Consensus 167 dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d 198 (433)
T PRK10867 167 DPVDIAKAALEEAKENGYDVVIVDTAGRLHID 198 (433)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCcccC
Confidence 2543 3345666678999999999987654
No 68
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=69.06 E-value=44 Score=27.13 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=26.7
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
++++..+ .+.++.+. ++|. +..+-+..+.+.++|.+|+|+.
T Consensus 159 lr~~~~~-~~~~~~Ie-VDGG-I~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 159 LKALRER-NGLEYLIE-VDGS-CNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred HHHHHHh-cCCCeEEE-EECC-CCHHHHHHHHHcCCCEEEEChH
Confidence 4444443 25555554 5676 6666666677789999999964
No 69
>PRK14057 epimerase; Provisional
Probab=69.06 E-value=38 Score=27.97 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=26.9
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
++++..+. +.++.+. ++|. +...-+..+.+.++|.+|+|+.
T Consensus 183 lr~~~~~~-~~~~~Ie-VDGG-I~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 183 LLCLLGDK-REGKIIV-IDGS-LTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred HHHHHHhc-CCCceEE-EECC-CCHHHHHHHHHCCCCEEEEChH
Confidence 44444332 4444444 6677 6666666777889999999964
No 70
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=68.97 E-value=35 Score=30.02 Aligned_cols=115 Identities=11% Similarity=0.053 Sum_probs=63.7
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (211)
+.-++|++++-+|..+..++++...|.+ .|.++.++- ... ..+.... +.+..+. +.++...
T Consensus 1 l~~k~IllgiTGSiaa~~~~~ll~~L~~-~g~~V~vv~---T~~-----A~~fv~~------~~l~~~~----~~~v~~~ 61 (390)
T TIGR00521 1 LENKKILLGVTGGIAAYKTVELVRELVR-QGAEVKVIM---TEA-----AKKFITP------LTLEALS----GHKVVTE 61 (390)
T ss_pred CCCCEEEEEEeCHHHHHHHHHHHHHHHh-CCCEEEEEE---CHh-----HHHHHHH------HHHHHhh----CCceeeh
Confidence 3568999999999999999888877754 577755433 211 1111111 1122222 2222222
Q ss_pred EeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cc--c-HHHHHHccCCceEEEEcC
Q 028280 81 VTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LA--M-SHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~g--s-~a~~vl~~a~~PVLvV~~ 136 (211)
..... ..... ...-...+|++|+-.-.-+.+.+ .| . ....++..+.+|+++++.
T Consensus 62 ~~~~~-~~~~~-hi~l~~~aD~~vVaPaTanTlaKiA~GiaDnLlt~~~~~~~~plviaPa 120 (390)
T TIGR00521 62 LWGPI-EHNAL-HIDLAKWADLILIAPATANTISKIAHGIADDLVSTTALAASAPIILAPA 120 (390)
T ss_pred hcccc-ccccc-hhhcccccCEEEEecCCHHHHHHHHcccCCcHHHHHHHHhCCCEEEEeC
Confidence 11111 01111 22222368999998887777766 33 2 444555556699999986
No 71
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=68.68 E-value=12 Score=27.38 Aligned_cols=52 Identities=23% Similarity=0.284 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCC-----Ccccc-cccHHHHHHccCCceEEEEcCCC
Q 028280 87 EGARIAALVREIGASALVVGLHDR-----SFLHK-LAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~-----~~~~~-~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
..+.|.+.+++++++.||+|-.-. +.... .-..++.+-...++||..+.+..
T Consensus 36 ~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v~~f~~~L~~~~~~~v~~~DEr~ 93 (130)
T TIGR00250 36 DWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERAQKFANRLEGRFGVPVVLWDERL 93 (130)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence 578899999999999999994432 22111 33355666666689999996543
No 72
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=68.48 E-value=73 Score=27.03 Aligned_cols=116 Identities=18% Similarity=0.038 Sum_probs=62.0
Q ss_pred HHHHHHhhccCCCEEEEEEEecCCCccc-hHHHHHHHHHHHHHHHHHHHHHhhhC-CCcEEEEEeeCCC---HHHHHHHH
Q 028280 20 LLWALQNLLRFGDVVTLLHVFPSLNSRN-RKKLRLLRLKGYQLALSFKDICNDFF-NTNVEIIVTEGDQ---EGARIAAL 94 (211)
Q Consensus 20 l~~A~~la~~~~a~l~llhV~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~-~i~~~~~v~~G~~---~~~~I~~~ 94 (211)
+..|+..+...|...+=+|...+.+... ...-..+......+.+-++...+..+ ++.+.++++.|.+ ....+++.
T Consensus 77 ~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~ 156 (312)
T PRK10550 77 LAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADA 156 (312)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHH
Confidence 4445556666676666666665432110 00000111111122222333333222 5778888777642 35678888
Q ss_pred HHHhCCCEEEEecCCCCccccccc-----HHHHHHccCCceEEEEcC
Q 028280 95 VREIGASALVVGLHDRSFLHKLAM-----SHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 95 a~~~~adLIVmG~~~~~~~~~~gs-----~a~~vl~~a~~PVLvV~~ 136 (211)
+++.++|.|.+..+.+.... .|. ...++.+..++||+..-.
T Consensus 157 l~~~Gvd~i~Vh~Rt~~~~y-~g~~~~~~~i~~ik~~~~iPVi~nGd 202 (312)
T PRK10550 157 VQQAGATELVVHGRTKEDGY-RAEHINWQAIGEIRQRLTIPVIANGE 202 (312)
T ss_pred HHhcCCCEEEECCCCCccCC-CCCcccHHHHHHHHhhcCCcEEEeCC
Confidence 88999999999665443211 221 355677777899887643
No 73
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=67.83 E-value=63 Score=27.25 Aligned_cols=93 Identities=15% Similarity=0.202 Sum_probs=55.2
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee-
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE- 83 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~- 83 (211)
+|+|++.|.-+|-.++..+... .|.++..+|+....... .. .+.++++|++...+++...-..
T Consensus 1 kVlVa~SGGVDSsvla~ll~~~---lG~~v~aV~vd~g~~~~-----~E--------~~~~~~~~~~~g~i~~~vvd~~e 64 (295)
T cd01997 1 KVILALSGGVDSTVAAVLLHKA---IGDRLTCVFVDNGLLRK-----NE--------AERVEELFSKLLGINLIVVDASE 64 (295)
T ss_pred CEEEEEcCChHHHHHHHHHHHH---hCCcEEEEEecCCCCCh-----HH--------HHHHHHHHHHhCCCcEEEEcCcH
Confidence 5889999888888777766542 46689999997643211 11 1224444444322233322110
Q ss_pred -------------------CCCHHHHHHHHHHHhC-CCEEEEecCCCCcc
Q 028280 84 -------------------GDQEGARIAALVREIG-ASALVVGLHDRSFL 113 (211)
Q Consensus 84 -------------------G~~~~~~I~~~a~~~~-adLIVmG~~~~~~~ 113 (211)
|....+.+.++|++.+ ++.|+.|++.....
T Consensus 65 ~fl~~l~~v~npe~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~~ 114 (295)
T cd01997 65 RFLSALKGVTDPEEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVI 114 (295)
T ss_pred HHHHHhcCCCCHHHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccchh
Confidence 1112335778889999 99999998765543
No 74
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=67.61 E-value=78 Score=27.03 Aligned_cols=91 Identities=20% Similarity=0.106 Sum_probs=53.2
Q ss_pred HHHHHHHHhhccCCCEEEEEEEecCCCccc--hHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCH----HHHH
Q 028280 18 AALLWALQNLLRFGDVVTLLHVFPSLNSRN--RKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQE----GARI 91 (211)
Q Consensus 18 ~al~~A~~la~~~~a~l~llhV~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~----~~~I 91 (211)
..+..|+.++...|...+=|+...|.+... .....+++ ....+.+-++.+.+.-+++.++++++.|.+- ...|
T Consensus 79 ~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~-~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~i 157 (323)
T COG0042 79 ELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLK-NPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEI 157 (323)
T ss_pred HHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcC-CHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHH
Confidence 566677888888887766677776643221 11111111 1111222222332222247888888887733 3469
Q ss_pred HHHHHHhCCCEEEEecCC
Q 028280 92 AALVREIGASALVVGLHD 109 (211)
Q Consensus 92 ~~~a~~~~adLIVmG~~~ 109 (211)
.+.+++.+++.|.+=.+.
T Consensus 158 a~~~~~~g~~~ltVHgRt 175 (323)
T COG0042 158 ARILEDAGADALTVHGRT 175 (323)
T ss_pred HHHHHhcCCCEEEEeccc
Confidence 999999999999995554
No 75
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=67.61 E-value=91 Score=27.86 Aligned_cols=108 Identities=10% Similarity=0.001 Sum_probs=65.0
Q ss_pred EEEEecCC-HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEE-EEee
Q 028280 6 IVVIVEDV-DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEI-IVTE 83 (211)
Q Consensus 6 ILv~vD~s-~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~-~v~~ 83 (211)
||++=|.. ..|.-.|+-+..+|.+. .+|+|.-..+. ++.+-.+++. ++...- .+..
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsGEES~-----------------~QiklRA~RL-~~~~~~l~l~a 153 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSGEESL-----------------QQIKLRADRL-GLPTNNLYLLA 153 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeCCcCH-----------------HHHHHHHHHh-CCCccceEEeh
Confidence 45555533 45888899999999754 67888643211 1122222222 332222 2333
Q ss_pred CCCHHHHHHHHHHHhCCCEEEEecCCCCcccc----cccHH---------HHHHccCCceEEEEcC
Q 028280 84 GDQEGARIAALVREIGASALVVGLHDRSFLHK----LAMSH---------NDISSSFNCRVLAIKQ 136 (211)
Q Consensus 84 G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~----~gs~a---------~~vl~~a~~PVLvV~~ 136 (211)
-. -.+.|.+.+++.+.|++|+.+=.--+... =||++ .++.+..++++++|-.
T Consensus 154 Et-~~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGH 218 (456)
T COG1066 154 ET-NLEDIIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGH 218 (456)
T ss_pred hc-CHHHHHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 33 57899999999999999999855322222 34422 2566777899998754
No 76
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=67.44 E-value=38 Score=27.30 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=24.3
Q ss_pred cEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 76 NVEIIVTEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 76 ~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
++.++ ++|. +..+-+..+.+.++|.+|+|+.
T Consensus 169 ~~~Ie-VDGG-I~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 169 DILIE-VDGG-INLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred CeEEE-EeCC-cCHHHHHHHHHcCCCEEEEEEE
Confidence 44444 6677 7788888888899999999983
No 77
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=67.06 E-value=83 Score=27.15 Aligned_cols=117 Identities=9% Similarity=0.115 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE--eeC-C-------
Q 028280 16 ARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV--TEG-D------- 85 (211)
Q Consensus 16 s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v--~~G-~------- 85 (211)
....+.|..+.+.+.|+...-++++..+... ...+........++.+.|.+. |+.+-.++ ... .
T Consensus 104 ~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~-----~~~~~~~~~~l~rv~~ec~~~-giPlllE~l~y~~~~~~~~~~~ 177 (340)
T PRK12858 104 PDLLDNWSVRRIKEAGADAVKLLLYYRPDED-----DAINDRKHAFVERVGAECRAN-DIPFFLEPLTYDGKGSDKKAEE 177 (340)
T ss_pred ccccccccHHHHHHcCCCEEEEEEEeCCCcc-----hHHHHHHHHHHHHHHHHHHHc-CCceEEEEeccCCCcccccccc
Confidence 3556778888899999988888887653211 112233444456677777764 77755442 221 0
Q ss_pred ---CHHHHHHHHH---H--HhCCCEEEEecCCCC-cccccc------------cHHHHHHccCCceEEEEcCCC
Q 028280 86 ---QEGARIAALV---R--EIGASALVVGLHDRS-FLHKLA------------MSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 86 ---~~~~~I~~~a---~--~~~adLIVmG~~~~~-~~~~~g------------s~a~~vl~~a~~PVLvV~~~~ 138 (211)
.-.+.|...+ . +.++|++=+-..+.- +.+.++ ..-.++...+++|+++...+.
T Consensus 178 ~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vvlsgG~ 251 (340)
T PRK12858 178 FAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIFLSAGV 251 (340)
T ss_pred ccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEEECCCC
Confidence 0122333333 2 588999988766542 222122 233466778999999987654
No 78
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=67.03 E-value=77 Score=26.97 Aligned_cols=112 Identities=14% Similarity=0.047 Sum_probs=59.8
Q ss_pred HHHHHhhccCCCEEEEEEEecCCCcc----chHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCH----HHHHH
Q 028280 21 LWALQNLLRFGDVVTLLHVFPSLNSR----NRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQE----GARIA 92 (211)
Q Consensus 21 ~~A~~la~~~~a~l~llhV~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~----~~~I~ 92 (211)
..|+..+...+...+=++...+.... .....-..-+...++.+.+.+. . ++.+.++++.|.+. ...++
T Consensus 80 ~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a---~-d~pv~vKiR~G~~~~~~~~~~~a 155 (321)
T PRK10415 80 ADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNA---V-DVPVTLKIRTGWAPEHRNCVEIA 155 (321)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHh---c-CCceEEEEEccccCCcchHHHHH
Confidence 44555566677777777777653211 0010000011122222223222 2 45677777666422 34677
Q ss_pred HHHHHhCCCEEEEecCCCCcccc---cccHHHHHHccCCceEEEEcC
Q 028280 93 ALVREIGASALVVGLHDRSFLHK---LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 93 ~~a~~~~adLIVmG~~~~~~~~~---~gs~a~~vl~~a~~PVLvV~~ 136 (211)
..+++.++|.|.+-.+.+..... .-....++.++.++||+..-.
T Consensus 156 ~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGg 202 (321)
T PRK10415 156 QLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGD 202 (321)
T ss_pred HHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCC
Confidence 77888899999886554332221 112455777778899887643
No 79
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=66.93 E-value=65 Score=25.87 Aligned_cols=85 Identities=14% Similarity=0.109 Sum_probs=44.7
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (211)
|...++.|+.|..... .|+. ++...+..+..+-|..+ ..-..+....+.+++. ++|.++=..
T Consensus 1 ~~~~~livALD~~~~~-~A~~----l~~~l~~~v~~iKVG~~----------L~~~~G~~~i~~lk~~---~~~~~IflD 62 (218)
T PRK13305 1 MSRPLLQLALDHTSLE-AAQR----DVTLLKDHVDIVEAGTI----------LCLNEGLGAVKALREQ---CPDKIIVAD 62 (218)
T ss_pred CCCCCEEEEeCCCCHH-HHHH----HHHHccccCCEEEECHH----------HHHHhCHHHHHHHHHh---CCCCEEEEE
Confidence 6667899999987644 4444 45544444444444432 2222222222333333 345444444
Q ss_pred EeeCCCHHHHHHHHHHHhCCCEEE
Q 028280 81 VTEGDQEGARIAALVREIGASALV 104 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~~adLIV 104 (211)
+...| ....+...+.+.++|++.
T Consensus 63 lKl~D-Ip~tv~~~~~~~Gad~~t 85 (218)
T PRK13305 63 WKVAD-AGETLAQQAFGAGANWMT 85 (218)
T ss_pred eeccc-ChHHHHHHHHHcCCCEEE
Confidence 45555 566666667777775433
No 80
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=66.88 E-value=63 Score=25.65 Aligned_cols=84 Identities=11% Similarity=0.022 Sum_probs=52.7
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
++|.|-+.++.....|+--|.. ....++++.+|-...+... ..+.+++ .|+.....-..
T Consensus 1 ~ki~VlaSG~GSNlqaiida~~-~~~~~a~i~~Visd~~~A~-------------------~lerA~~-~gIpt~~~~~k 59 (200)
T COG0299 1 KKIAVLASGNGSNLQAIIDAIK-GGKLDAEIVAVISDKADAY-------------------ALERAAK-AGIPTVVLDRK 59 (200)
T ss_pred CeEEEEEeCCcccHHHHHHHHh-cCCCCcEEEEEEeCCCCCH-------------------HHHHHHH-cCCCEEEeccc
Confidence 4788888888888888888887 4434677666554432111 1122222 36665443222
Q ss_pred CC----CHHHHHHHHHHHhCCCEEEEecC
Q 028280 84 GD----QEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 84 G~----~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
+. .--.+|.+..++.++||||+...
T Consensus 60 ~~~~r~~~d~~l~~~l~~~~~dlvvLAGy 88 (200)
T COG0299 60 EFPSREAFDRALVEALDEYGPDLVVLAGY 88 (200)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCEEEEcch
Confidence 22 13477889999999999999764
No 81
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=66.36 E-value=43 Score=27.47 Aligned_cols=50 Identities=8% Similarity=0.062 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCCCC
Q 028280 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAA 139 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~~~ 139 (211)
.+......+++++|++|+.+.....-. .+-+..++..++.|.+||.....
T Consensus 49 ~~~~~~~~~~~~pDf~i~isPN~a~PG--P~~ARE~l~~~~iP~IvI~D~p~ 98 (277)
T PRK00994 49 EEVVKKMLEEWKPDFVIVISPNPAAPG--PKKAREILKAAGIPCIVIGDAPG 98 (277)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCCCC--chHHHHHHHhcCCCEEEEcCCCc
Confidence 344555668999999999886543221 23577999999999999976443
No 82
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=66.26 E-value=80 Score=26.66 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=56.5
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
|.+.++++.+.++|-..|..+.+.....+-.+.+||+-...... ...+ ...++++++ |+++.+...
T Consensus 19 f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~--Et~e-----------frd~~a~~~-gl~l~v~~~ 84 (294)
T TIGR02039 19 FERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFR--EMIA-----------FRDHMVAKY-GLRLIVHSN 84 (294)
T ss_pred cCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCH--HHHH-----------HHHHHHHHh-CCCEEEEec
Confidence 56678889999999888888777665435678999997654321 1111 111222222 444444211
Q ss_pred -----eCCCH-------------HHHHHHHHHHhCCCEEEEecCCC
Q 028280 83 -----EGDQE-------------GARIAALVREIGASALVVGLHDR 110 (211)
Q Consensus 83 -----~G~~~-------------~~~I~~~a~~~~adLIVmG~~~~ 110 (211)
.|-++ .+.+.+++++++.|.++.|.+..
T Consensus 85 ~~~~~~g~~~~~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRD 130 (294)
T TIGR02039 85 EEGIADGINPFTEGSALHTDIMKTEALRQALDKNQFDAAFGGARRD 130 (294)
T ss_pred hhhhhcCccccccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChh
Confidence 11101 14577888889999999998753
No 83
>PRK00919 GMP synthase subunit B; Validated
Probab=65.77 E-value=33 Score=29.12 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=29.8
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~ 43 (211)
++++|++.|.-+|-.++.++... .|.+++.+|+....
T Consensus 22 ~kVlVa~SGGVDSsvla~la~~~---lG~~v~aV~vD~G~ 58 (307)
T PRK00919 22 GKAIIALSGGVDSSVAAVLAHRA---IGDRLTPVFVDTGL 58 (307)
T ss_pred CCEEEEecCCHHHHHHHHHHHHH---hCCeEEEEEEECCC
Confidence 68999999999888888776552 47889999998654
No 84
>PRK13054 lipid kinase; Reviewed
Probab=65.63 E-value=79 Score=26.37 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=24.7
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEE
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTL 36 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~l 36 (211)
|||+++++-+++.......+..........+..+.+
T Consensus 1 ~~~~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v 36 (300)
T PRK13054 1 MTFPKSLLILNGKSAGNEELREAVGLLREEGHTLHV 36 (300)
T ss_pred CCCceEEEEECCCccchHHHHHHHHHHHHcCCEEEE
Confidence 899999999997654445555555555556666555
No 85
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=65.62 E-value=15 Score=28.74 Aligned_cols=115 Identities=15% Similarity=0.034 Sum_probs=61.9
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
|++|++++-||-.+..+.+.+-.|.+..|.++.+ +-.... .+..........+.+..+... + .
T Consensus 1 ~k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~v---v~T~~A-----~~fv~~~~~~~~~~~~~l~~~-----v----~ 63 (185)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDVGEIETHL---VISQAA-----RQTLAHETDFSLRDVQALADV-----V----H 63 (185)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEE---EECHHH-----HHHHHHHHCCChhhHHHhcCc-----c----c
Confidence 6899999999999999999888887655766444 332111 111111000001112222211 0 0
Q ss_pred eCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cc--c-HHH---HHHccCCceEEEEcC
Q 028280 83 EGDQEGARIAALVREIGASALVVGLHDRSFLHK--LA--M-SHN---DISSSFNCRVLAIKQ 136 (211)
Q Consensus 83 ~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~g--s-~a~---~vl~~a~~PVLvV~~ 136 (211)
..++....|.. . ...+|++|+..-.-+.+.+ .| . ... .++-...+|+++++.
T Consensus 64 ~~~~~~~~i~~-~-s~~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~ 123 (185)
T PRK06029 64 DVRDIGASIAS-G-SFGTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVR 123 (185)
T ss_pred ChhhcccChhh-c-CchhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEec
Confidence 11101112221 1 1247999999888777766 33 2 222 245567899999984
No 86
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=65.45 E-value=71 Score=25.75 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=43.6
Q ss_pred hCCCcEEEEEeeCC--CHH---HHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCCC
Q 028280 72 FFNTNVEIIVTEGD--QEG---ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 72 ~~~i~~~~~v~~G~--~~~---~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
+.++++.+.- .|. +|. .+..+..+++++|.||+++.....-. .+-+..++..+..|.+||....
T Consensus 29 Redi~vrVvg-sgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPG--P~kARE~l~~s~~PaiiigDaP 97 (277)
T COG1927 29 REDIEVRVVG-SGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPG--PKKAREILSDSDVPAIIIGDAP 97 (277)
T ss_pred cCCceEEEec-cccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCC--chHHHHHHhhcCCCEEEecCCc
Confidence 4566665532 221 233 45668888999999999987644321 2367789999999999997643
No 87
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=65.32 E-value=74 Score=26.66 Aligned_cols=85 Identities=15% Similarity=0.260 Sum_probs=48.4
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
.+||.|-+-++.....||-.+.+.- ..++++.++-...+ .+..++++ .|+++...-.
T Consensus 89 ~~ri~vl~Sg~gsnl~al~~~~~~~-~~~~~i~~visn~~---------------------~~~~lA~~-~gIp~~~~~~ 145 (286)
T PRK06027 89 RKRVVILVSKEDHCLGDLLWRWRSG-ELPVEIAAVISNHD---------------------DLRSLVER-FGIPFHHVPV 145 (286)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHcC-CCCcEEEEEEEcCh---------------------hHHHHHHH-hCCCEEEecc
Confidence 3567777777766666666554442 24555555444321 12222333 3777655211
Q ss_pred e---CCCHHHHHHHHHHHhCCCEEEEecCCC
Q 028280 83 E---GDQEGARIAALVREIGASALVVGLHDR 110 (211)
Q Consensus 83 ~---G~~~~~~I~~~a~~~~adLIVmG~~~~ 110 (211)
. -.+....+.+..+++++|+||+....+
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~Dlivlagy~~ 176 (286)
T PRK06027 146 TKETKAEAEARLLELIDEYQPDLVVLARYMQ 176 (286)
T ss_pred CccccchhHHHHHHHHHHhCCCEEEEecchh
Confidence 1 111345788888999999999987544
No 88
>PRK00509 argininosuccinate synthase; Provisional
Probab=65.15 E-value=1e+02 Score=27.34 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=31.3
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
|+++|+|++.+.-+|..++.|+.+. .|.+++.+++...
T Consensus 1 ~~~kVvva~SGGlDSsvla~~l~e~---lG~eViavt~d~G 38 (399)
T PRK00509 1 MKKKVVLAYSGGLDTSVIIKWLKET---YGCEVIAFTADVG 38 (399)
T ss_pred CCCeEEEEEcCCHHHHHHHHHHHHh---hCCeEEEEEEecC
Confidence 5679999999999999988887653 3778999999765
No 89
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=64.63 E-value=97 Score=27.77 Aligned_cols=92 Identities=12% Similarity=0.008 Sum_probs=60.4
Q ss_pred EEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCC
Q 028280 6 IVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGD 85 (211)
Q Consensus 6 ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~ 85 (211)
.+|++-+|.....+-..|..+-+ .+-++.++..-..-+ .+.++++.+.++. ++++-.. ..+.
T Consensus 104 mmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~Rp---------------AA~eQL~~La~q~-~v~~f~~-~~~~ 165 (451)
T COG0541 104 LMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRP---------------AAIEQLKQLAEQV-GVPFFGS-GTEK 165 (451)
T ss_pred EEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCCh---------------HHHHHHHHHHHHc-CCceecC-CCCC
Confidence 45667888888888888888887 677766655432211 1123355555542 5554443 3344
Q ss_pred CHH---HHHHHHHHHhCCCEEEEecCCCCcccc
Q 028280 86 QEG---ARIAALVREIGASALVVGLHDRSFLHK 115 (211)
Q Consensus 86 ~~~---~~I~~~a~~~~adLIVmG~~~~~~~~~ 115 (211)
||. ..-++.+++.+.|+|++.+.|+..+..
T Consensus 166 ~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide 198 (451)
T COG0541 166 DPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDE 198 (451)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcccccH
Confidence 454 556678888999999999999988865
No 90
>PRK08349 hypothetical protein; Validated
Probab=64.59 E-value=66 Score=25.07 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=27.1
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEec
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFP 41 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~ 41 (211)
.++|+++.|..+|-.++.++.. .|.++..+|+..
T Consensus 1 ~~~vvllSGG~DS~v~~~~l~~----~g~~v~av~~d~ 34 (198)
T PRK08349 1 MKAVALLSSGIDSPVAIYLMLR----RGVEVYPVHFRQ 34 (198)
T ss_pred CcEEEEccCChhHHHHHHHHHH----cCCeEEEEEEeC
Confidence 3688999999998888865543 478999999975
No 91
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=64.55 E-value=52 Score=27.15 Aligned_cols=57 Identities=9% Similarity=0.183 Sum_probs=32.3
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCC---CCcccc-ccc-HHHHHHccCCceEEEEcCC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHD---RSFLHK-LAM-SHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~---~~~~~~-~gs-~a~~vl~~a~~PVLvV~~~ 137 (211)
|++++. .... ++..+.+. ++|.+++|+.. .+++-. .|+ ...-+.++.++||+|+-+.
T Consensus 158 gi~v~~--i~d~----~~~~~m~~-~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~~~vPv~v~~~~ 219 (282)
T PF01008_consen 158 GIPVTL--IPDS----AVGYVMPR-DVDKVLIGADAVLANGGVVNKVGTLQLALAAKEFNVPVYVLAES 219 (282)
T ss_dssp T-EEEE--E-GG----GHHHHHHC-TESEEEEE-SEEETTS-EEEETTHHHHHHHHHHTT-EEEEE--G
T ss_pred ceeEEE--Eech----HHHHHHHH-hCCeeEEeeeEEecCCCEeehhhHHHHHHHHHhhCCCEEEEccc
Confidence 666544 3333 23344444 69999999986 343444 888 3335778889999999653
No 92
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=64.49 E-value=15 Score=25.90 Aligned_cols=67 Identities=7% Similarity=0.121 Sum_probs=40.5
Q ss_pred HHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCCC
Q 028280 63 LSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 63 ~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
+.+++.+++. |+++++ .... ..++.......++|+|++|.+-+.... -....+...++||.++++..
T Consensus 19 ~k~k~~~~e~-gi~~~i--~a~~--~~e~~~~~~~~~~DvIll~PQi~~~~~----~i~~~~~~~~ipv~~I~~~~ 85 (104)
T PRK09590 19 KKTTEYLKEQ-GKDIEV--DAIT--ATEGEKAIAAAEYDLYLVSPQTKMYFK----QFEEAGAKVGKPVVQIPPQA 85 (104)
T ss_pred HHHHHHHHHC-CCceEE--EEec--HHHHHHhhccCCCCEEEEChHHHHHHH----HHHHHhhhcCCCEEEeCHHH
Confidence 3455666553 776554 3333 334555555557899999987554333 22355556789999998643
No 93
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=64.24 E-value=44 Score=29.63 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=37.6
Q ss_pred EeeCCCHHHHHHHHHHHhC---CCEEEEecCCCCcccc---ccc--HHHHHHccCCceEEEEcCCC
Q 028280 81 VTEGDQEGARIAALVREIG---ASALVVGLHDRSFLHK---LAM--SHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~~---adLIVmG~~~~~~~~~---~gs--~a~~vl~~a~~PVLvV~~~~ 138 (211)
.+.|+.....|++..+..+ +|.||+|..|-+ ++. |-. +++ -+..+++||+.-=.++
T Consensus 171 ~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS-~eDL~~Fn~e~v~~-ai~~~~~Pvis~IGHE 234 (438)
T PRK00286 171 LVQGEGAAASIVAAIERANARGEDVLIVARGGGS-LEDLWAFNDEAVAR-AIAASRIPVISAVGHE 234 (438)
T ss_pred cCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC-HHHhhccCcHHHHH-HHHcCCCCEEEeccCC
Confidence 4558877888888777655 499999976654 333 444 444 4567899988754443
No 94
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=63.74 E-value=79 Score=28.45 Aligned_cols=91 Identities=8% Similarity=-0.069 Sum_probs=50.7
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee----CCC
Q 028280 11 EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE----GDQ 86 (211)
Q Consensus 11 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~----G~~ 86 (211)
|..-..-.||..|+..+ +..|..|.|.++.................+.+..+.+-+++. |... .+.. |+
T Consensus 11 DLRl~DN~aL~~A~~~~---~~~vlpvyv~dp~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~-g~~L--~v~~g~~~g~- 83 (472)
T PRK10674 11 DLRLHDNLALAAACRDP---SARVLALFIATPAQWAAHDMAPRQAAFINAQLNALQIALAEK-GIPL--LFHEVDDFAA- 83 (472)
T ss_pred CCCcchHHHHHHHHhCC---CCCEEEEEEECchhhccCCCCHHHHHHHHHHHHHHHHHHHHc-CCce--EEEecCCcCC-
Confidence 45555666777776543 236889999886321110000111111122222333333333 5444 4444 57
Q ss_pred HHHHHHHHHHHhCCCEEEEecC
Q 028280 87 EGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~ 108 (211)
+.+.+.+.+++.+++-|+....
T Consensus 84 ~~~vl~~l~~~~~i~~v~~~~~ 105 (472)
T PRK10674 84 SVEWLKQFCQQHQVTHLFYNYQ 105 (472)
T ss_pred HHHHHHHHHHHcCCCEEEEecc
Confidence 9999999999999999998653
No 95
>TIGR00930 2a30 K-Cl cotransporter.
Probab=62.75 E-value=1.6e+02 Score=29.20 Aligned_cols=124 Identities=11% Similarity=0.030 Sum_probs=77.0
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G 84 (211)
.+||.+.........+..|-++.+ ...-.++.||.+.+... ..+..+...+.+.++.++ .+++.=..+..+
T Consensus 577 qiLvl~~~p~~~~~Ll~f~~~l~~-~~gl~i~~~v~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~ 647 (953)
T TIGR00930 577 QCLVLTGPPVCRPALLDFASQFTK-GKGLMICGSVIQGPRLE-------CVKEAQAAEAKIQTWLEK-NKVKAFYAVVVA 647 (953)
T ss_pred eEEEEeCCCcCcHHHHHHHHHhcc-CCcEEEEEEEecCchhh-------hHHHHHHHHHHHHHHHHH-hCCCeEEEEecC
Confidence 688999777777888999888885 34567777888653211 011122233444555543 255554556666
Q ss_pred CCHHHHHHHHHHHh-----CCCEEEEecCCC---Cc---ccccccHHHHHHccCCceEEEEcCCC
Q 028280 85 DQEGARIAALVREI-----GASALVVGLHDR---SF---LHKLAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 85 ~~~~~~I~~~a~~~-----~adLIVmG~~~~---~~---~~~~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
.|..+++....+.. .++.|+||.... .. .+.+-.+... +..++..|+|.|...
T Consensus 648 ~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~y~~~i~~-a~~~~~~v~i~r~~~ 711 (953)
T TIGR00930 648 DDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPRAWETYIGIIHD-AFDAHLAVVVVRNSE 711 (953)
T ss_pred CCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccchhHHHHHHHHHH-HHHcCCcEEEEcccc
Confidence 66999999888874 488999998643 11 1112223222 347789999998643
No 96
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=61.70 E-value=65 Score=25.99 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=30.2
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLL 37 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll 37 (211)
.++|+++.|++...+.|...+..+....|-.+.++
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv 188 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKKAGFITKVI 188 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 47899999999999999999999998888766554
No 97
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=61.69 E-value=66 Score=27.56 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=38.0
Q ss_pred HHHHHHhhhCCCcEEEEEeeCC---CHHHHHHHHHHHhCCCEEE-EecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 64 SFKDICNDFFNTNVEIIVTEGD---QEGARIAALVREIGASALV-VGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 64 ~l~~~~~~~~~i~~~~~v~~G~---~~~~~I~~~a~~~~adLIV-mG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+.+.+++. ++.+...+..|+ +..+.+.+.+++.++|.|| +|...- ..++..+.....+|++.|+-
T Consensus 40 ~v~~~l~~~-~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~------~D~aK~ia~~~~~p~i~VPT 109 (349)
T cd08550 40 RFEAALAKS-IIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKT------LDTAKAVADRLDKPIVIVPT 109 (349)
T ss_pred HHHHHHHhc-CCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHH------HHHHHHHHHHcCCCEEEeCC
Confidence 344444432 665555555555 1245677778888999877 664211 11333444445789999974
No 98
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=59.95 E-value=92 Score=26.19 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=48.3
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe-
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT- 82 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~- 82 (211)
++|.|-+.++..+..+|-++.+.-. .++++.++-...+ + +.++++++ |+++...-.
T Consensus 94 ~kiavl~Sg~g~nl~al~~~~~~~~-l~~~i~~visn~~------~---------------~~~~A~~~-gIp~~~~~~~ 150 (289)
T PRK13010 94 PKVVIMVSKFDHCLNDLLYRWRMGE-LDMDIVGIISNHP------D---------------LQPLAVQH-DIPFHHLPVT 150 (289)
T ss_pred eEEEEEEeCCCccHHHHHHHHHCCC-CCcEEEEEEECCh------h---------------HHHHHHHc-CCCEEEeCCC
Confidence 4677777777777777777654433 3455444433221 0 12333333 776654211
Q ss_pred eCC--CHHHHHHHHHHHhCCCEEEEecCCC
Q 028280 83 EGD--QEGARIAALVREIGASALVVGLHDR 110 (211)
Q Consensus 83 ~G~--~~~~~I~~~a~~~~adLIVmG~~~~ 110 (211)
..+ +....+.+..+++++|++|+....+
T Consensus 151 ~~~~~~~~~~~~~~l~~~~~Dlivlagym~ 180 (289)
T PRK13010 151 PDTKAQQEAQILDLIETSGAELVVLARYMQ 180 (289)
T ss_pred cccccchHHHHHHHHHHhCCCEEEEehhhh
Confidence 111 1345788889999999999987543
No 99
>PRK04148 hypothetical protein; Provisional
Probab=59.21 E-value=44 Score=24.77 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=27.0
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCc
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSF 112 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~ 112 (211)
+.+.-..++...+....|++.|++.++|++|.--.+...
T Consensus 77 ~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 77 NAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred cCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 455555666655577788888888888888876655443
No 100
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=59.08 E-value=1.1e+02 Score=25.67 Aligned_cols=104 Identities=13% Similarity=0.273 Sum_probs=59.8
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
++||.|-+.++..+..++-.+...- ..++++.++-...+ . +..++++ .|+++...-.
T Consensus 84 ~~ki~vl~Sg~g~nl~~l~~~~~~g-~l~~~i~~visn~~--~-------------------~~~~A~~-~gIp~~~~~~ 140 (280)
T TIGR00655 84 LKRVAILVSKEDHCLGDLLWRWYSG-ELDAEIALVISNHE--D-------------------LRSLVER-FGIPFHYIPA 140 (280)
T ss_pred CcEEEEEEcCCChhHHHHHHHHHcC-CCCcEEEEEEEcCh--h-------------------HHHHHHH-hCCCEEEcCC
Confidence 4688888888888888877765443 24455554433321 1 1112333 3777654322
Q ss_pred e-C--CCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 83 E-G--DQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 83 ~-G--~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
. . .+-...+.+..+++++|+||+....+-.- ..++...+..++=+.+
T Consensus 141 ~~~~~~~~e~~~~~~l~~~~~Dlivlagym~il~-------~~~l~~~~~~iINiHp 190 (280)
T TIGR00655 141 TKDNRVEHEKRQLELLKQYQVDLVVLAKYMQILS-------PDFVKRYPNKIINIHH 190 (280)
T ss_pred CCcchhhhHHHHHHHHHHhCCCEEEEeCchhhCC-------HHHHhhccCCEEEecC
Confidence 1 1 11245788889999999999987543221 2455555555555544
No 101
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=58.79 E-value=33 Score=24.20 Aligned_cols=60 Identities=15% Similarity=0.010 Sum_probs=36.8
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCC--ceEEEEc
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFN--CRVLAIK 135 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~--~PVLvV~ 135 (211)
|.++ .....+.+.+.+++.+.+.++|+|++...........-...+.+=...+ +++++--
T Consensus 27 G~~V--~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG 88 (119)
T cd02067 27 GFEV--IDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG 88 (119)
T ss_pred CCEE--EECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 6555 2233334789999999999999999988744444333334444433333 5555543
No 102
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=58.43 E-value=89 Score=24.58 Aligned_cols=102 Identities=15% Similarity=0.153 Sum_probs=57.5
Q ss_pred EecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee----C
Q 028280 9 IVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE----G 84 (211)
Q Consensus 9 ~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~----G 84 (211)
+.-.++.+..++..+..++...+..+.++.+..... + .. ..+.. .+ |.+--..+.. .
T Consensus 30 ~~vi~e~~~~~l~ea~~la~~~g~~v~av~~G~~~~-------~-------~~---~~~l~-~~-G~d~V~~~~~~~~~~ 90 (202)
T cd01714 30 PLIINPYDEYAVEEALRLKEKYGGEVTVVSMGPPQA-------E-------EA---LREAL-AM-GADRAILVSDRAFAG 90 (202)
T ss_pred CccCChHhHHHHHHHHHhhhhcCCEEEEEEECCHHH-------H-------HH---HHHHH-Hc-CCCEEEEEecccccC
Confidence 344567788889999999888888887777653200 0 00 11111 12 4432222211 1
Q ss_pred ---CCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceE
Q 028280 85 ---DQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRV 131 (211)
Q Consensus 85 ---~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PV 131 (211)
+.....|.+.+++.++|+|++|....+...+ .++-++..+.++|+
T Consensus 91 ~~~e~~a~al~~~i~~~~p~lVL~~~t~~~~~gr--dlaprlAarLga~l 138 (202)
T cd01714 91 ADTLATAKALAAAIKKIGVDLILTGKQSIDGDTG--QVGPLLAELLGWPQ 138 (202)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEEcCCcccCCcC--cHHHHHHHHhCCCc
Confidence 1124568888888899999999877543222 23344555555443
No 103
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=57.77 E-value=31 Score=24.73 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=33.2
Q ss_pred EEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHcc
Q 028280 78 EIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSS 126 (211)
Q Consensus 78 ~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~ 126 (211)
++...-.+.+.+.+++.+.+.++|.|++..........+..+.+.+-..
T Consensus 29 ~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~ 77 (122)
T cd02071 29 EVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLREL 77 (122)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhc
Confidence 4443444458999999999999999999987654444344444444333
No 104
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=57.73 E-value=74 Score=23.44 Aligned_cols=48 Identities=8% Similarity=-0.094 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHcc-C-CceEEEE
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSS-F-NCRVLAI 134 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~-a-~~PVLvV 134 (211)
+.+.+++.+.+.++|+|.+.....+....+..+.+.+-.. . .++|++-
T Consensus 42 p~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vG 91 (137)
T PRK02261 42 SQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVG 91 (137)
T ss_pred CHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 7899999999999999999876654443344455444333 2 3555544
No 105
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=57.60 E-value=60 Score=24.80 Aligned_cols=63 Identities=16% Similarity=0.043 Sum_probs=39.4
Q ss_pred HHhhhCCCcEEEE--EeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEE
Q 028280 68 ICNDFFNTNVEII--VTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 68 ~~~~~~~i~~~~~--v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV 134 (211)
+.+.++++.+... -..+.+..+.|++.+++.++|+|++|-.....-. ...+...+.+.+|++-
T Consensus 66 l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~----~~~~~~~~l~~~v~~~ 130 (171)
T cd06533 66 LRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGAPKQEL----WIARHKDRLPVPVAIG 130 (171)
T ss_pred HHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHH----HHHHHHHHCCCCEEEE
Confidence 3334788886652 1223323456899999999999999976544321 2335556667776663
No 106
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=57.07 E-value=1.3e+02 Score=26.12 Aligned_cols=91 Identities=14% Similarity=0.082 Sum_probs=54.7
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe-
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT- 82 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~- 82 (211)
++|+|++.+.-+|--++..+.+ .|-+++.+|+......... +-.+..+++|++. |+++.+.-.
T Consensus 6 ~kVlValSGGVDSsvaa~LL~~----~G~~V~~v~~~~~~~~~~~-----------~d~~~a~~va~~L-gIp~~vvd~~ 69 (360)
T PRK14665 6 KRVLLGMSGGTDSSVAAMLLLE----AGYEVTGVTFRFYEFNGST-----------EYLEDARALAERL-GIGHITYDAR 69 (360)
T ss_pred CEEEEEEcCCHHHHHHHHHHHH----cCCeEEEEEEecCCCCCCh-----------HHHHHHHHHHHHh-CCCEEEEecH
Confidence 5899999999888877766554 4778888888643211100 0112234444443 444433211
Q ss_pred ----------------eCC--CH---------HHHHHHHHHHhCCCEEEEecCCC
Q 028280 83 ----------------EGD--QE---------GARIAALVREIGASALVVGLHDR 110 (211)
Q Consensus 83 ----------------~G~--~~---------~~~I~~~a~~~~adLIVmG~~~~ 110 (211)
.|. ++ ...+.++|++.++|.|+.|.+-+
T Consensus 70 ~~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 70 KVFRKQIIDYFIDEYMSGHTPVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred HHHHHHHHhhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 021 12 24567889999999999997754
No 107
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=56.97 E-value=84 Score=23.82 Aligned_cols=35 Identities=17% Similarity=0.101 Sum_probs=28.8
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~ 43 (211)
+++|++-|..+|-.++.++.. .|.+++.+|+....
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~----~g~~v~av~~d~g~ 35 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMK----RGIEVDALHFNSGP 35 (177)
T ss_pred CEEEEecCChhHHHHHHHHHH----cCCeEEEEEEeCCC
Confidence 588999999999888888766 37889999998654
No 108
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=56.86 E-value=41 Score=21.90 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=26.0
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEE
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTL 36 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~l 36 (211)
++|+++.|.++....+.+.........|-.+..
T Consensus 44 ~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~ 76 (79)
T cd03364 44 KEVILAFDGDEAGQKAALRALELLLKLGLNVRV 76 (79)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEE
Confidence 789999999988888887777777777666544
No 109
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=56.71 E-value=33 Score=25.20 Aligned_cols=48 Identities=15% Similarity=0.052 Sum_probs=33.5
Q ss_pred EEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHc
Q 028280 78 EIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISS 125 (211)
Q Consensus 78 ~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~ 125 (211)
++.-..++...+++++.|.+.++|.|++.+...+....+..+.+.+-.
T Consensus 32 eVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~ 79 (132)
T TIGR00640 32 DVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDK 79 (132)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHh
Confidence 333344445788999999999999999988765544445556666544
No 110
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=56.45 E-value=37 Score=25.06 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC-ccc----c-cccHHHHHHccC-CceEEEEcCCCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRS-FLH----K-LAMSHNDISSSF-NCRVLAIKQPAA 139 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~-~~~----~-~gs~a~~vl~~a-~~PVLvV~~~~~ 139 (211)
..+.|.+.+++++++.||+|-.-.. +-. + .-..++.+-... ++||..+.+...
T Consensus 39 ~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~~~DEr~T 98 (135)
T PF03652_consen 39 DIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVILVDERLT 98 (135)
T ss_dssp CHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEEEEECSCS
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEEEECCChh
Confidence 7999999999999999999986432 111 1 333566677776 899999976443
No 111
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=56.31 E-value=78 Score=28.21 Aligned_cols=56 Identities=13% Similarity=0.110 Sum_probs=36.0
Q ss_pred EeeCCCHHHHHHHHHHHh----CCCEEEEecCCCCcccc---ccc--HHHHHHccCCceEEEEcCCC
Q 028280 81 VTEGDQEGARIAALVREI----GASALVVGLHDRSFLHK---LAM--SHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~----~adLIVmG~~~~~~~~~---~gs--~a~~vl~~a~~PVLvV~~~~ 138 (211)
.+.|+.....|++..+.. ++|.||+|..|-+ .+. |-. ++. -+..+++||+.-=.++
T Consensus 165 ~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs-~eDL~~Fn~e~~~r-ai~~~~~Pvis~iGHe 229 (432)
T TIGR00237 165 LVQGEGAVQSIVESIELANTKNECDVLIVGRGGGS-LEDLWSFNDEKVAR-AIFLSKIPIISAVGHE 229 (432)
T ss_pred cccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCC-HHHhhhcCcHHHHH-HHHcCCCCEEEecCcC
Confidence 455886777887766543 3699999976654 333 443 443 4467889988754443
No 112
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=55.73 E-value=1.4e+02 Score=26.01 Aligned_cols=88 Identities=10% Similarity=0.060 Sum_probs=53.6
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v 81 (211)
+.++|+|++.+.-+|-.++.+.. ..|.++..+|+..... . .+.++++|+.. |++..+.-
T Consensus 4 ~~~kVlVa~SGGvDSsv~a~lL~----~~G~eV~av~~~~~~~----e------------~~~a~~va~~L-GI~~~vvd 62 (362)
T PRK14664 4 SKKRVLVGMSGGIDSTATCLMLQ----EQGYEIVGVTMRVWGD----E------------PQDARELAARM-GIEHYVAD 62 (362)
T ss_pred CCCEEEEEEeCCHHHHHHHHHHH----HcCCcEEEEEecCcch----h------------HHHHHHHHHHh-CCCEEEEe
Confidence 45799999999988877665433 3577788888843110 0 01233444433 44433321
Q ss_pred ee-----------------CCC----------H-HHHHHHHHHHhCCCEEEEecCCC
Q 028280 82 TE-----------------GDQ----------E-GARIAALVREIGASALVVGLHDR 110 (211)
Q Consensus 82 ~~-----------------G~~----------~-~~~I~~~a~~~~adLIVmG~~~~ 110 (211)
.. |.. + ...+.++|++.++|.|..|.+.+
T Consensus 63 ~~~~f~~~v~~~~~~~~~~G~tpnpC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar 119 (362)
T PRK14664 63 ERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSR 119 (362)
T ss_pred ChHHHHHHHHHHhHHHHHcCCCCCCchhhhHHHHHHHHHHHHHHcCCCEEEECCccc
Confidence 11 110 1 34678999999999999998874
No 113
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=55.32 E-value=36 Score=23.76 Aligned_cols=63 Identities=5% Similarity=0.085 Sum_probs=39.3
Q ss_pred HHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 63 LSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 63 ~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+.+++.+++. |+++++. ... ..++.+... ++|+|++|.+-+..+. -....+...+.||.+|..
T Consensus 18 ~km~~~a~~~-gi~~~i~--a~~--~~e~~~~~~--~~Dvill~PQv~~~~~----~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 18 NALNKGAKER-GVPLEAA--AGA--YGSHYDMIP--DYDLVILAPQMASYYD----ELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred HHHHHHHHHC-CCcEEEE--Eee--HHHHHHhcc--CCCEEEEcChHHHHHH----HHHHHhhhcCCCEEEeCH
Confidence 3466666653 7776654 222 333444443 6799999987655443 233556666899999875
No 114
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=55.00 E-value=1e+02 Score=24.20 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCEEEEe----cCCCCcccccccHHHHHHccCC-ceEEEEcCC
Q 028280 88 GARIAALVREIGASALVVG----LHDRSFLHKLAMSHNDISSSFN-CRVLAIKQP 137 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG----~~~~~~~~~~gs~a~~vl~~a~-~PVLvV~~~ 137 (211)
.+.....+....+|+++|+ -.+.++. ...+.+.+..+ ++|+++-..
T Consensus 36 ~~~~~~~~~~~~pDlvLlDl~~~l~~~~g~----~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 36 VDDLAIACDSLRPSVVFINEDCFIHDASNS----QRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred HHHHHHHHhccCCCEEEEeCcccCCCCChH----HHHHHHHHHCCCCeEEEEECC
Confidence 4445566777789999999 4444332 26667766555 999998654
No 115
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=54.75 E-value=1.3e+02 Score=25.37 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=37.8
Q ss_pred CCcEEEEEeeCCC----HHHHHHHHHHHhCCCEEEEecCCCC-cccc--cccHHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQ----EGARIAALVREIGASALVVGLHDRS-FLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~----~~~~I~~~a~~~~adLIVmG~~~~~-~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
++.+.+++..|.+ -...++..+++.++|.|++..+... +... .-.....+....++||+..-.
T Consensus 131 ~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGg 200 (319)
T TIGR00737 131 DIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGD 200 (319)
T ss_pred CCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCC
Confidence 4667777654421 2456777778889999988544221 1111 112455667777899887643
No 116
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=54.63 E-value=54 Score=26.95 Aligned_cols=108 Identities=14% Similarity=0.062 Sum_probs=56.6
Q ss_pred HHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHh-h---hCCCcEEEEE--eeCCCHHHHHHHHH
Q 028280 22 WALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICN-D---FFNTNVEIIV--TEGDQEGARIAALV 95 (211)
Q Consensus 22 ~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~---~~~i~~~~~v--~~G~~~~~~I~~~a 95 (211)
.|..+|..-|++++=+++.......+....+ ..+.++.. ++..+. + +.++.++.-. ...+ ..+.+.+..
T Consensus 99 aA~~IA~a~gA~FIRVN~~tg~~~tdqGiie---g~A~e~~r-~r~~L~~~v~vlADv~VKHa~~l~~~~-~~~~v~dtv 173 (263)
T COG0434 99 AALAIAYAVGADFIRVNVLTGAYATDQGIIE---GNAAELAR-YRARLGSRVKVLADVHVKHAVHLGNRS-LEEAVKDTV 173 (263)
T ss_pred HHHHHHHhcCCCEEEEEeeeceEecccceec---chHHHHHH-HHHhccCCcEEEeecchhcccccCCcC-HHHHHHHHH
Confidence 3556666678888888887653222111111 11111111 122221 1 2333343332 3335 778888888
Q ss_pred HHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEc
Q 028280 96 REIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 96 ~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~ 135 (211)
+...+|-||+....-+.--.+. --+.+-+.++.|||+=.
T Consensus 174 er~~aDaVI~tG~~TG~~~d~~-el~~a~~~~~~pvlvGS 212 (263)
T COG0434 174 ERGLADAVIVTGSRTGSPPDLE-ELKLAKEAVDTPVLVGS 212 (263)
T ss_pred HccCCCEEEEecccCCCCCCHH-HHHHHHhccCCCEEEec
Confidence 9999999998765443221111 22355666779998853
No 117
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=54.60 E-value=90 Score=25.05 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=22.3
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
+.++.+.+ +|. +..+=+..+.+.++|.+|+|+.
T Consensus 165 ~~~~~I~v-dGG-I~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 165 GRDIRLEI-DGG-VKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred CCCeeEEE-ECC-CCHHHHHHHHHcCCCEEEEeHH
Confidence 44555554 565 5555555666789999999964
No 118
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=54.29 E-value=1.6e+02 Score=26.31 Aligned_cols=91 Identities=8% Similarity=-0.129 Sum_probs=51.9
Q ss_pred EEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCC
Q 028280 7 VVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQ 86 (211)
Q Consensus 7 Lv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~ 86 (211)
+|+.-|+..+-.+...|..+.. .|.++.++..-+..+ ...++++.+++. .++.+... ..+.|
T Consensus 105 lvG~~GvGKTTtaaKLA~~l~~-~G~kV~lV~~D~~R~---------------aA~eQLk~~a~~-~~vp~~~~-~~~~d 166 (429)
T TIGR01425 105 FVGLQGSGKTTTCTKLAYYYQR-KGFKPCLVCADTFRA---------------GAFDQLKQNATK-ARIPFYGS-YTESD 166 (429)
T ss_pred EECCCCCCHHHHHHHHHHHHHH-CCCCEEEEcCcccch---------------hHHHHHHHHhhc-cCCeEEee-cCCCC
Confidence 4555677777777777776654 466777665432110 111224444443 35555432 23333
Q ss_pred HHH---HHHHHHHHhCCCEEEEecCCCCcccc
Q 028280 87 EGA---RIAALVREIGASALVVGLHDRSFLHK 115 (211)
Q Consensus 87 ~~~---~I~~~a~~~~adLIVmG~~~~~~~~~ 115 (211)
|.. .-++.++..++|+|++.+.|+.....
T Consensus 167 p~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~ 198 (429)
T TIGR01425 167 PVKIASEGVEKFKKENFDIIIVDTSGRHKQED 198 (429)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCCCCcchH
Confidence 543 33445566689999999999876654
No 119
>PRK00074 guaA GMP synthase; Reviewed
Probab=53.55 E-value=1.8e+02 Score=26.58 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=54.1
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHH-HHhhhCCCcEEEEEe
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKD-ICNDFFNTNVEIIVT 82 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~i~~~~~v~ 82 (211)
++++|++.|..+|-.++..+.+. .|.++..+|+....... ... +.+.+ +++.. |+++.+.-.
T Consensus 216 ~~vlva~SGGvDS~vll~ll~~~---lg~~v~av~vd~g~~~~-----~e~--------~~~~~~~a~~l-gi~~~vvd~ 278 (511)
T PRK00074 216 KKVILGLSGGVDSSVAAVLLHKA---IGDQLTCVFVDHGLLRK-----NEA--------EQVMEMFREHF-GLNLIHVDA 278 (511)
T ss_pred CcEEEEeCCCccHHHHHHHHHHH---hCCceEEEEEeCCCCCH-----HHH--------HHHHHHHHHHc-CCcEEEEcc
Confidence 68999999988887777666543 26789999996543211 111 11222 22222 444333210
Q ss_pred --------------------eCCCHHHHHHHHHHHh-CCCEEEEecCCCCcc
Q 028280 83 --------------------EGDQEGARIAALVREI-GASALVVGLHDRSFL 113 (211)
Q Consensus 83 --------------------~G~~~~~~I~~~a~~~-~adLIVmG~~~~~~~ 113 (211)
.|......+.+.|++. +++.|+-|++-....
T Consensus 279 ~~~f~~~l~g~~~~~~~r~~~~~~~~~~~~~~a~~~~g~~~latGhn~dD~~ 330 (511)
T PRK00074 279 SDRFLSALAGVTDPEEKRKIIGREFIEVFEEEAKKLGGVKFLAQGTLYPDVI 330 (511)
T ss_pred HHHHHHhccCCCCcHHhhhhhhHHHHHHHHHHHHHccCCCEEEECCCcchhh
Confidence 0111144567888888 999999998655443
No 120
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=53.39 E-value=86 Score=27.91 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=16.5
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhh
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNL 27 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la 27 (211)
|+++||+ =++....+++.|++...
T Consensus 1 ~~~kVLv--lG~G~re~al~~~l~~~ 24 (435)
T PRK06395 1 MTMKVML--VGSGGREDAIARAIKRS 24 (435)
T ss_pred CceEEEE--ECCcHHHHHHHHHHHhC
Confidence 3456776 25667788999888654
No 121
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=53.17 E-value=1.1e+02 Score=24.84 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=30.3
Q ss_pred HHHHHHHHH---HhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEc
Q 028280 88 GARIAALVR---EIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 88 ~~~I~~~a~---~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~ 135 (211)
.+.+.+.|+ +.++|+|||..-|.+...+ +.+-+.+++||++-+
T Consensus 164 ~~~l~~Aa~~L~~~gadlIvLDCmGYt~~~r-----~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 164 EEELAAAARELAEQGADLIVLDCMGYTQEMR-----DIVQRALGKPVLLSR 209 (221)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCHHHH-----HHHHHHhCCCEEeHH
Confidence 455555554 4689999999988775432 356666889999754
No 122
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=53.11 E-value=29 Score=22.76 Aligned_cols=33 Identities=27% Similarity=0.345 Sum_probs=20.3
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVT 35 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ 35 (211)
+++|++++|++...+.+..+........+-++.
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~ 78 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVT 78 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG-------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhccccc
Confidence 478888888888888888877776655555544
No 123
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=53.11 E-value=95 Score=27.83 Aligned_cols=62 Identities=13% Similarity=0.187 Sum_probs=38.1
Q ss_pred hCCCcEEE--EEeeCCCHHHHHHHHHHH---h-CCCEEEEecCCCCcccc---ccc-HHHHHHccCCceEEEE
Q 028280 72 FFNTNVEI--IVTEGDQEGARIAALVRE---I-GASALVVGLHDRSFLHK---LAM-SHNDISSSFNCRVLAI 134 (211)
Q Consensus 72 ~~~i~~~~--~v~~G~~~~~~I~~~a~~---~-~adLIVmG~~~~~~~~~---~gs-~a~~vl~~a~~PVLvV 134 (211)
+|.+++.+ ..+.|++...+|++..+. . .+|.||+|..|-| ++. |-. ..-+-+..+.+||+--
T Consensus 160 ~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS-iEDLW~FNdE~vaRAi~~s~iPvISA 231 (440)
T COG1570 160 FPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS-IEDLWAFNDEIVARAIAASRIPVISA 231 (440)
T ss_pred CCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch-HHHHhccChHHHHHHHHhCCCCeEee
Confidence 44544433 245688788888876664 3 3999999965544 455 322 2224456788898753
No 124
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=52.98 E-value=1.7e+02 Score=26.14 Aligned_cols=92 Identities=14% Similarity=0.066 Sum_probs=54.5
Q ss_pred EEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCC
Q 028280 6 IVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGD 85 (211)
Q Consensus 6 ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~ 85 (211)
++++.-|+..+..+...|..+..+.|.++.++..-...+ . ..++++.++.. .++++.... .+.
T Consensus 103 ~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~----~-----------a~~QL~~~a~~-~gvp~~~~~-~~~ 165 (428)
T TIGR00959 103 LMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP----A-----------AIEQLKVLGQQ-VGVPVFALG-KGQ 165 (428)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch----H-----------HHHHHHHHHHh-cCCceEecC-CCC
Confidence 445556777788888888887655677777765543211 0 11224444443 255544322 233
Q ss_pred CHHH---HHHHHHHHhCCCEEEEecCCCCccc
Q 028280 86 QEGA---RIAALVREIGASALVVGLHDRSFLH 114 (211)
Q Consensus 86 ~~~~---~I~~~a~~~~adLIVmG~~~~~~~~ 114 (211)
+|.+ ..++.++..++|+|++.+.|+....
T Consensus 166 ~P~~i~~~al~~~~~~~~DvVIIDTaGr~~~d 197 (428)
T TIGR00959 166 SPVEIARRALEYAKENGFDVVIVDTAGRLQID 197 (428)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccccC
Confidence 3543 3445566678999999999987643
No 125
>PRK00766 hypothetical protein; Provisional
Probab=52.98 E-value=36 Score=26.92 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=42.6
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHH----hCCCEEEEecCCCCcccccccHHHHHHccCCceEEEE
Q 028280 74 NTNVEIIVTEGDQEGARIAALVRE----IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~----~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV 134 (211)
|+-+....++|.|..++|++..+. .+..+|++..-.-+++.- -..+.+-+....||++|
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNv--vD~~~l~~~tg~PVI~V 104 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNV--VDIEELYRETGLPVIVV 104 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeEE--ecHHHHHHHHCCCEEEE
Confidence 566677788999999999999886 355577766544444321 13457888999999999
No 126
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=52.26 E-value=1.3e+02 Score=24.66 Aligned_cols=118 Identities=8% Similarity=0.043 Sum_probs=62.5
Q ss_pred EEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccc----hHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 7 VVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRN----RKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 7 Lv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
-++..|--........++.+|++.|-.|-.==-+|...... ....+.+..........|..+++.. |.++...--
T Consensus 31 NIACG~HAGDp~~M~~tv~lA~~~gV~iGAHPsyPD~~gFGRr~m~~s~~el~~~v~yQigaL~~~a~~~-g~~l~hVKP 109 (242)
T PF03746_consen 31 NIACGFHAGDPETMRRTVRLAKEHGVAIGAHPSYPDREGFGRRSMDISPEELRDSVLYQIGALQAIAAAE-GVPLHHVKP 109 (242)
T ss_dssp EEE-SSSS--HHHHHHHHHHHHHTT-EEEEE---S-TTTTT-S-----HHHHHHHHHHHHHHHHHHHHHT-T--EEEE--
T ss_pred HHhhcccccCHHHHHHHHHHHHHcCCEeccCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCeeEEecc
Confidence 34555555555667778888888876654332333221111 1123444444445556677777754 777666432
Q ss_pred e---------CCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEE
Q 028280 83 E---------GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLA 133 (211)
Q Consensus 83 ~---------G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLv 133 (211)
. ....++.|++.+++.+.+|.++|.. ||...+..++...+++-
T Consensus 110 HGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~a--------gs~~~~~A~~~Gl~~~~ 161 (242)
T PF03746_consen 110 HGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLA--------GSELEKAAKELGLPVVF 161 (242)
T ss_dssp -HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEET--------TSHHHHHHHHCT--EEE
T ss_pred cHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcC--------CcHHHHHHHHCCCcEEE
Confidence 2 2226788999999999999999976 44455778888888763
No 127
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=51.68 E-value=1.5e+02 Score=25.17 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=30.1
Q ss_pred HHhCCCEEEEecCCC---Ccccc-ccc-HHHHHHccCCceEEEEcCC
Q 028280 96 REIGASALVVGLHDR---SFLHK-LAM-SHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 96 ~~~~adLIVmG~~~~---~~~~~-~gs-~a~~vl~~a~~PVLvV~~~ 137 (211)
+...+|++++|+..- +++-. .|+ ...-+.++.++||+|+-+.
T Consensus 194 ~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~vPv~V~a~s 240 (303)
T TIGR00524 194 QKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFRIPFFVAAPL 240 (303)
T ss_pred cccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhCCCEEEeccc
Confidence 345799999999862 33444 888 3335668889999999653
No 128
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=51.52 E-value=1.6e+02 Score=25.57 Aligned_cols=115 Identities=13% Similarity=0.073 Sum_probs=67.7
Q ss_pred HHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHh--
Q 028280 21 LWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREI-- 98 (211)
Q Consensus 21 ~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~-- 98 (211)
.+-..+++..++.+.+.+=--...+......+.+-...+...+.++ ++..|++.+-.+..|.+.+..|..+|-+.
T Consensus 161 ~~~~~~ak~~~aNvl~fNYpGVg~S~G~~s~~dLv~~~~a~v~yL~---d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~ 237 (365)
T PF05677_consen 161 DWIQRFAKELGANVLVFNYPGVGSSTGPPSRKDLVKDYQACVRYLR---DEEQGPKAKNIILYGHSLGGGVQAEALKKEV 237 (365)
T ss_pred HHHHHHHHHcCCcEEEECCCccccCCCCCCHHHHHHHHHHHHHHHH---hcccCCChheEEEeeccccHHHHHHHHHhcc
Confidence 5788999999999877763221111111111222222222222222 22348888889999998998887666433
Q ss_pred -----CCCEEEEecCCCCcccc-----ccc-------------HHHHHHccCCceEEEEcCCC
Q 028280 99 -----GASALVVGLHDRSFLHK-----LAM-------------SHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 99 -----~adLIVmG~~~~~~~~~-----~gs-------------~a~~vl~~a~~PVLvV~~~~ 138 (211)
+..++++-.++.+.+.. +|. .+.+..+..+||=+++-...
T Consensus 238 ~~~~dgi~~~~ikDRsfssl~~vas~~~~~~~~~l~~l~gWnidS~K~s~~l~cpeIii~~~d 300 (365)
T PF05677_consen 238 LKGSDGIRWFLIKDRSFSSLAAVASQFFGPIGKLLIKLLGWNIDSAKNSEKLQCPEIIIYGVD 300 (365)
T ss_pred cccCCCeeEEEEecCCcchHHHHHHHHHHHHHHHHHHHhccCCCchhhhccCCCCeEEEeccc
Confidence 46677777676655542 332 23455567789999986643
No 129
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=51.08 E-value=26 Score=30.32 Aligned_cols=63 Identities=10% Similarity=0.134 Sum_probs=45.2
Q ss_pred CCcEEEEEeeCCC--------HHHHHHHHHHHhCCCEEEEecCCCCcc-cc-cccHHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQ--------EGARIAALVREIGASALVVGLHDRSFL-HK-LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~--------~~~~I~~~a~~~~adLIVmG~~~~~~~-~~-~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+.++...+.-|+| ..+.|+..+++.++|++|.|.-=.-+- .. -|.++..|-.+..+|++.--.
T Consensus 47 ~~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~ 119 (349)
T PF07355_consen 47 DAEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMY 119 (349)
T ss_pred CCEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEec
Confidence 3455555666653 346788999999999999997533222 22 667888999999999986543
No 130
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=51.07 E-value=1.6e+02 Score=25.19 Aligned_cols=40 Identities=20% Similarity=0.126 Sum_probs=31.7
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
|.++++++.+.++|--.|..+.+.....+..+-+|||-..
T Consensus 37 f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG 76 (312)
T PRK12563 37 CSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTT 76 (312)
T ss_pred cCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCC
Confidence 5678889999999998888887776544567889998654
No 131
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=50.92 E-value=37 Score=24.91 Aligned_cols=37 Identities=11% Similarity=-0.107 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHH
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDI 123 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~v 123 (211)
+.+.+++.|.++++|+|.+.+---+....+..+.+.+
T Consensus 38 ~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l 74 (128)
T cd02072 38 PQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKC 74 (128)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHH
Confidence 7899999999999999999876544443344444433
No 132
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=50.73 E-value=1.1e+02 Score=23.32 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=38.5
Q ss_pred hhhCCCcEEEEEee--CCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEE
Q 028280 70 NDFFNTNVEIIVTE--GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLA 133 (211)
Q Consensus 70 ~~~~~i~~~~~v~~--G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLv 133 (211)
+.++++.+...-.. ..+-.+.|++.+++.++|+|++|-.....-. ...+...+.+.+|.+
T Consensus 70 ~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~----~~~~~~~~l~~~v~i 131 (172)
T PF03808_consen 70 RRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQER----WIARHRQRLPAGVII 131 (172)
T ss_pred HHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHH----HHHHHHHHCCCCEEE
Confidence 34677776643211 2225789999999999999999976554321 233556667777544
No 133
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=50.34 E-value=1.6e+02 Score=25.13 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=34.5
Q ss_pred HHHHHhhhCCCcEEEE-EeeCCCH----HHHHHHHHHHhCCCEEE-EecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 65 FKDICNDFFNTNVEII-VTEGDQE----GARIAALVREIGASALV-VGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~-v~~G~~~----~~~I~~~a~~~~adLIV-mG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+.+.+++ .++++... ...|+ + .+.+.+.+++.++|.|| +|...- ..++..+.....+|++.|+-
T Consensus 41 v~~~l~~-~~~~~~~~~~~~~~-p~~~~v~~~~~~~~~~~~d~iiavGGGs~------~D~aK~ia~~~~~p~i~VPT 110 (345)
T cd08171 41 IKAALEQ-SGIEITDFIWYGGE-STYENVERLKKNPAVQEADMIFAVGGGKA------IDTVKVLADKLGKPVFTFPT 110 (345)
T ss_pred HHHHHHH-CCCeEEEEEecCCC-CCHHHHHHHHHHHhhcCCCEEEEeCCcHH------HHHHHHHHHHcCCCEEEecC
Confidence 4444433 25555432 23344 3 34566777788999888 664211 11333333344789999874
No 134
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=50.13 E-value=80 Score=24.44 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=36.3
Q ss_pred HHHhhhCCCcEEEEEeeCC-C--HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEE
Q 028280 67 DICNDFFNTNVEIIVTEGD-Q--EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLA 133 (211)
Q Consensus 67 ~~~~~~~~i~~~~~v~~G~-~--~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLv 133 (211)
.+.+++|++.+... .|. + -.++|++.+.+.++|+|++|-.....-. + ..+...+.+++|++
T Consensus 67 ~l~~~yP~l~i~g~--~g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE~-~---~~~~~~~~~~~v~~ 130 (177)
T TIGR00696 67 KLIKEYPKLKIVGA--FGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEI-W---MRNHRHLKPDAVMI 130 (177)
T ss_pred HHHHHCCCCEEEEE--CCCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhHH-H---HHHhHHhCCCcEEE
Confidence 33334788887654 433 1 2367888999999999999975543211 1 12334445566554
No 135
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=50.12 E-value=84 Score=21.84 Aligned_cols=68 Identities=4% Similarity=0.005 Sum_probs=40.0
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCC-ceEEEEc
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFN-CRVLAIK 135 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~-~PVLvV~ 135 (211)
+...+++ .|.+ +.+.+.+...+.+.+.+++.++|+|.++..-.........+++.+-...+ +++++--
T Consensus 20 la~~l~~-~G~~--v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG 88 (121)
T PF02310_consen 20 LAAYLRK-AGHE--VDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGG 88 (121)
T ss_dssp HHHHHHH-TTBE--EEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred HHHHHHH-CCCe--EEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 3344443 2554 44555553569999999999999999988544333334445555433334 4555543
No 136
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=49.12 E-value=1.7e+02 Score=24.92 Aligned_cols=93 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH
Q 028280 18 AALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVRE 97 (211)
Q Consensus 18 ~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~ 97 (211)
+++...+..|...+.++.++-.-..+..........+.+ .|+++... +-.++-.+.++
T Consensus 130 ~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~----------------~gI~~~~I------~Dsa~~~~~~~ 187 (301)
T COG1184 130 KTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQ----------------SGIPVTVI------VDSAVGAFMSR 187 (301)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHH----------------cCCceEEE------echHHHHHHHh
Q ss_pred hCCCEEEEecCC---CCcccc-ccc-HHHHHHccCCceEEEE
Q 028280 98 IGASALVVGLHD---RSFLHK-LAM-SHNDISSSFNCRVLAI 134 (211)
Q Consensus 98 ~~adLIVmG~~~---~~~~~~-~gs-~a~~vl~~a~~PVLvV 134 (211)
+|.+++|++. .+.+-. .|. .---+.+++..|++++
T Consensus 188 --vd~VivGad~I~~nG~lvnkiGT~~lA~~A~e~~~Pf~v~ 227 (301)
T COG1184 188 --VDKVLVGADAILANGALVNKIGTSPLALAARELRVPFYVV 227 (301)
T ss_pred --CCEEEECccceecCCcEEeccchHHHHHHHHHhCCCEEEE
No 137
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=48.51 E-value=1.8e+02 Score=25.07 Aligned_cols=33 Identities=18% Similarity=0.035 Sum_probs=24.0
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEec
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFP 41 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~ 41 (211)
+|+|++-+.-+|-.++..+.+ .+.+++.+|+..
T Consensus 1 kVlValSGGvDSsvla~lL~~----~g~~v~~v~i~~ 33 (349)
T cd01998 1 KVVVAMSGGVDSSVAAALLKE----QGYEVIGVFMKN 33 (349)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEec
Confidence 588999888888777655443 466788888754
No 138
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=48.42 E-value=56 Score=24.01 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=24.8
Q ss_pred EEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCccc
Q 028280 78 EIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLH 114 (211)
Q Consensus 78 ~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~ 114 (211)
.+.+..|. +.+.+.+...++|++|.+-.|-.++.
T Consensus 72 ~~~v~~G~---~~l~~~~~~~~~D~vv~Ai~G~aGL~ 105 (129)
T PF02670_consen 72 GIEVLSGP---EGLEELAEEPEVDIVVNAIVGFAGLK 105 (129)
T ss_dssp SSEEEESH---HHHHHHHTHTT-SEEEE--SSGGGHH
T ss_pred CCEEEeCh---HHHHHHhcCCCCCEEEEeCcccchHH
Confidence 44567777 88999998899999999988877665
No 139
>PRK08005 epimerase; Validated
Probab=48.41 E-value=62 Score=25.87 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=22.5
Q ss_pred EEeeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 80 IVTEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 80 ~v~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
.-++|. +...-+..+.+.++|.+|+|+.
T Consensus 166 I~VDGG-I~~~~i~~l~~aGad~~V~Gsa 193 (210)
T PRK08005 166 CWADGG-ITLRAARLLAAAGAQHLVIGRA 193 (210)
T ss_pred EEEECC-CCHHHHHHHHHCCCCEEEEChH
Confidence 457788 7777777778889999999964
No 140
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=47.92 E-value=57 Score=23.02 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccC-CceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSF-NCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a-~~PVLvV~~~ 137 (211)
++....+.|++.++..||+-+. -|.++..+.+.- +||++++-+.
T Consensus 4 ia~aa~~~A~~~~ak~Ivv~T~-------sG~ta~~isk~RP~~pIiavt~~ 48 (117)
T PF02887_consen 4 IARAAVELAEDLNAKAIVVFTE-------SGRTARLISKYRPKVPIIAVTPN 48 (117)
T ss_dssp HHHHHHHHHHHHTESEEEEE-S-------SSHHHHHHHHT-TSSEEEEEESS
T ss_pred HHHHHHHHHHhcCCCEEEEECC-------CchHHHHHHhhCCCCeEEEEcCc
Confidence 5677889999999999998764 355667777774 4999999764
No 141
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.96 E-value=2.3e+02 Score=25.98 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=57.9
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHH---HHHHHHHHhhhCCCcEEEEE
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQL---ALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~i~~~~~v 81 (211)
-..|+|++-..|......|-+|.+ .+-++ ++..+++.... ..+.++-+.+.+ ....-+++++-.|-+
T Consensus 381 i~fvGVNGVGKSTNLAKIayWLlq-NkfrV-LIAACDTFRsG---AvEQLrtHv~rl~~l~~~~v~lfekGYgkd----- 450 (587)
T KOG0781|consen 381 ISFVGVNGVGKSTNLAKIAYWLLQ-NKFRV-LIAACDTFRSG---AVEQLRTHVERLSALHGTMVELFEKGYGKD----- 450 (587)
T ss_pred EEEEeecCccccchHHHHHHHHHh-CCceE-EEEeccchhhh---HHHHHHHHHHHHHHhccchhHHHhhhcCCC-----
Confidence 356788988888888888888876 33333 23333332221 112222222221 111223333211111
Q ss_pred eeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHH
Q 028280 82 TEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHN 121 (211)
Q Consensus 82 ~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~ 121 (211)
... ++..-+.+|+..+.|.|.|.+-|+..-.. +++++.
T Consensus 451 -~a~-vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k 490 (587)
T KOG0781|consen 451 -AAG-VAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAK 490 (587)
T ss_pred -hHH-HHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHH
Confidence 112 46778899999999999999998765444 566654
No 142
>PHA02031 putative DnaG-like primase
Probab=46.74 E-value=83 Score=26.18 Aligned_cols=37 Identities=8% Similarity=0.046 Sum_probs=31.0
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHV 39 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV 39 (211)
-++|+++.|++.....|...|+.++...+-.+.++..
T Consensus 206 ~~~Vil~fDgD~AG~~Aa~ra~~~l~~~~~~v~vv~l 242 (266)
T PHA02031 206 CPRVLIFLDGDPAGVDGSAGAMRRLRPLLIEGQVIIT 242 (266)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHHHHcCCceEEEEC
Confidence 3789999999999999999999999887766665544
No 143
>PRK05920 aromatic acid decarboxylase; Validated
Probab=46.55 E-value=52 Score=26.17 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=27.4
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLL 37 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll 37 (211)
|.++|++++-+|-.+..++...-.|.+ .|.++.++
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~-~g~~V~vi 36 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLA-ADYEVHLV 36 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEE
Confidence 568999999999999888887777765 47765444
No 144
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=46.14 E-value=98 Score=28.51 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHH---HHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 61 LALSFKDICNDFFNTNVEIIVTEGDQEGARIAAL---VREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 61 ~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~---a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+.+.+.+++.++ +...++.++.+. ..+++... ....++|.||-. |+++..+-.+.++||+.|+-.
T Consensus 25 l~~~~~~i~~~~-~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~dviIsr----------G~ta~~i~~~~~iPVv~i~~s 92 (538)
T PRK15424 25 LFELFRDISLEF-DHLANITPIQLG-FEKAVTYIRKRLATERCDAIIAA----------GSNGAYLKSRLSVPVILIKPS 92 (538)
T ss_pred HHHHHHHHHHhc-CCCceEEehhhh-HHHHHHHHHHHHhhCCCcEEEEC----------chHHHHHHhhCCCCEEEecCC
Confidence 344466666654 444555555655 44444433 334578887754 667778888899999999754
No 145
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=46.04 E-value=1.7e+02 Score=26.64 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=32.8
Q ss_pred HHHHHHHHHHh----CCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCCC
Q 028280 88 GARIAALVREI----GASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 88 ~~~I~~~a~~~----~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
.+.|.+..++. ++|.||+--+.-+.- +..-.+++..++|||+...+.
T Consensus 51 ~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a----~~~i~~~~~l~~PvL~~~~q~ 101 (484)
T cd03557 51 PDEILAVCREANADDNCAGVITWMHTFSPA----KMWIAGLTALQKPLLHLHTQF 101 (484)
T ss_pred HHHHHHHHHHccccCCccEEEEccCCCchH----HHHHHHHHHcCCCEEEEccCC
Confidence 56666777774 489999876544432 244467888999999987653
No 146
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=46.04 E-value=1.4e+02 Score=27.38 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=40.8
Q ss_pred HHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHH---HHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 62 ALSFKDICNDFFNTNVEIIVTEGDQEGARIAAL---VREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 62 ~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~---a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
.+.+.+++.++++ ..++.+..|+ ..+++... ....++|.||-. |+++..+-.+.++||+-|+-.
T Consensus 16 ~~~~~~i~~~~~~-~~~~~v~~~~-~~~~~~~a~~~~~~~~~dviIsr----------G~ta~~i~~~~~iPVv~i~~s 82 (526)
T TIGR02329 16 FDLFRDIAPEFDH-RANITPIQLG-FEDAVREIRQRLGAERCDVVVAG----------GSNGAYLKSRLSLPVIVIKPT 82 (526)
T ss_pred HHHHHHHHHhCCC-CceEEEEecc-HHHHHHHHHHHHHhCCCcEEEEC----------chHHHHHHHhCCCCEEEecCC
Confidence 3445555555533 2445567777 65555543 445578887743 566777778889999999754
No 147
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=45.85 E-value=1.8e+02 Score=24.38 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=48.6
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe-
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT- 82 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~- 82 (211)
.||.|.+-++..+..||-.+...-. .++++.++-...+ + +..++.+ .|+++...-.
T Consensus 90 ~ri~vl~Sg~g~nl~al~~~~~~~~-~~~~i~~visn~~------~---------------~~~lA~~-~gIp~~~~~~~ 146 (286)
T PRK13011 90 PKVLIMVSKFDHCLNDLLYRWRIGE-LPMDIVGVVSNHP------D---------------LEPLAAW-HGIPFHHFPIT 146 (286)
T ss_pred ceEEEEEcCCcccHHHHHHHHHcCC-CCcEEEEEEECCc------c---------------HHHHHHH-hCCCEEEeCCC
Confidence 4788888887777777776655443 4556555443321 0 2222333 3777654211
Q ss_pred eCC--CHHHHHHHHHHHhCCCEEEEecCC
Q 028280 83 EGD--QEGARIAALVREIGASALVVGLHD 109 (211)
Q Consensus 83 ~G~--~~~~~I~~~a~~~~adLIVmG~~~ 109 (211)
..+ +....+.+..+++++|++|+....
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~Dlivlagy~ 175 (286)
T PRK13011 147 PDTKPQQEAQVLDVVEESGAELVVLARYM 175 (286)
T ss_pred cCchhhhHHHHHHHHHHhCcCEEEEeChh
Confidence 111 123467888899999999998653
No 148
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=45.75 E-value=1.5e+02 Score=24.98 Aligned_cols=115 Identities=18% Similarity=0.068 Sum_probs=56.8
Q ss_pred HHHHHHHHhhccCCCEEEEEEEecCCCccc--hHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCC--H--HHHH
Q 028280 18 AALLWALQNLLRFGDVVTLLHVFPSLNSRN--RKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQ--E--GARI 91 (211)
Q Consensus 18 ~al~~A~~la~~~~a~l~llhV~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~--~--~~~I 91 (211)
.-+..|+.++...+...+=|+...|.+... ......++ ....+.+-++.+.+.. ++++.++++.|.+ . ...+
T Consensus 66 ~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~-~p~~~~~iv~~~~~~~-~~pvsvKiR~g~~~~~~~~~~~ 143 (309)
T PF01207_consen 66 EDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLK-DPDLLAEIVKAVRKAV-PIPVSVKIRLGWDDSPEETIEF 143 (309)
T ss_dssp HHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC--HHHHHHHHHHHHHH--SSEEEEEEESECT--CHHHHHH
T ss_pred HHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhc-ChHHhhHHHHhhhccc-ccceEEecccccccchhHHHHH
Confidence 344556667776676666666666543210 00001111 1112222333333322 5777777777663 2 4667
Q ss_pred HHHHHHhCCCEEEEecCCCCcccc---cccHHHHHHccCCceEEEE
Q 028280 92 AALVREIGASALVVGLHDRSFLHK---LAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 92 ~~~a~~~~adLIVmG~~~~~~~~~---~gs~a~~vl~~a~~PVLvV 134 (211)
++.+.+.+++.|.+-.+.+....+ --.....+....++||+.=
T Consensus 144 ~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~N 189 (309)
T PF01207_consen 144 ARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIAN 189 (309)
T ss_dssp HHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEE
T ss_pred HHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEc
Confidence 788888999999997764433222 1123457788888888764
No 149
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=45.64 E-value=2.2e+02 Score=25.32 Aligned_cols=110 Identities=13% Similarity=0.044 Sum_probs=56.5
Q ss_pred EEEecCCHHHHHHHHHHHHhh-ccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCC
Q 028280 7 VVIVEDVDAARAALLWALQNL-LRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGD 85 (211)
Q Consensus 7 Lv~vD~s~~s~~al~~A~~la-~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~ 85 (211)
+++-.|+..+..+...|..++ ...+.++.++..-+. . . ...+.+..++... ++.+.......+
T Consensus 226 ~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~-r----~----------~a~eqL~~~a~~~-~vp~~~~~~~~~ 289 (424)
T PRK05703 226 LVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY-R----I----------GAVEQLKTYAKIM-GIPVEVVYDPKE 289 (424)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc-H----H----------HHHHHHHHHHHHh-CCceEccCCHHh
Confidence 334456666777888888877 445677777764321 0 0 0112344444332 555543222222
Q ss_pred CHHHHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccC--Cce-EEEEcC
Q 028280 86 QEGARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSF--NCR-VLAIKQ 136 (211)
Q Consensus 86 ~~~~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a--~~P-VLvV~~ 136 (211)
....|.. ..++|+|++.+.|++.... ....-..++..+ ++. .||+..
T Consensus 290 -l~~~l~~---~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a 340 (424)
T PRK05703 290 -LAKALEQ---LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSA 340 (424)
T ss_pred -HHHHHHH---hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEEC
Confidence 3333332 2368999999998876543 222223444422 233 556654
No 150
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=45.60 E-value=1.9e+02 Score=24.46 Aligned_cols=56 Identities=9% Similarity=0.075 Sum_probs=36.0
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCC---CCcccc-ccc-HHHHHHccCCceEEEEcCC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHD---RSFLHK-LAM-SHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~---~~~~~~-~gs-~a~~vl~~a~~PVLvV~~~ 137 (211)
|+++.. .... -...+. + .+|.+++|+.. .+++-. .|+ ..--+.++.++||+|+-+.
T Consensus 166 gI~vtl--I~Ds-a~~~~m---~--~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~ 226 (301)
T TIGR00511 166 GIPVTL--IVDS-AVRYFM---K--EVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVAAET 226 (301)
T ss_pred CCCEEE--Eehh-HHHHHH---H--hCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEccc
Confidence 776665 3333 233333 2 38999999987 333444 888 3335667889999999653
No 151
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=45.53 E-value=2.1e+02 Score=25.08 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=27.3
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEec
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFP 41 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~ 41 (211)
.++++++.|.-+|--++.++.. .|.++..+|+..
T Consensus 177 gkvvvllSGGiDS~vaa~l~~k----~G~~v~av~~~~ 210 (394)
T PRK01565 177 GKALLLLSGGIDSPVAGYLAMK----RGVEIEAVHFHS 210 (394)
T ss_pred CCEEEEECCChhHHHHHHHHHH----CCCEEEEEEEeC
Confidence 4789999999888888877655 378999999954
No 152
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=45.44 E-value=2.3e+02 Score=25.44 Aligned_cols=113 Identities=17% Similarity=0.071 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
-....||..|++ .+ .+..|.|.++.................+.+..|.+.+++. |....+. ..|+ +.+.|.+
T Consensus 10 l~DN~aL~~A~~----~~-~vlpvyi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~-G~~L~v~-~~g~-~~~~l~~ 81 (475)
T TIGR02766 10 VEDNPALAAAAR----AG-PVIPVFVWAPEEEGQYYPGRVSRWWLKQSLAHLDQSLRSL-GTCLVTI-RSTD-TVAALLD 81 (475)
T ss_pred cchHHHHHHHHh----CC-CEEEEEEechHHhccccccHHHHHHHHHHHHHHHHHHHHc-CCceEEE-eCCC-HHHHHHH
Confidence 344556765543 23 6888899876321100000000111222223333333332 5444432 2478 9999999
Q ss_pred HHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEc
Q 028280 94 LVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 94 ~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~ 135 (211)
.+++.+++-|..-.... .... .-....+.+...++.+....
T Consensus 82 l~~~~~i~~v~~~~~~~-~~~~~rd~~v~~~l~~~gi~~~~~~ 123 (475)
T TIGR02766 82 CVRSTGATRLFFNHLYD-PVSLVRDHRAKEVLTAQGISVQSFN 123 (475)
T ss_pred HHHHcCCCEEEEecccC-HHHHHHHHHHHHHHHHcCCEEEEec
Confidence 99999999998876522 2222 22233445555566665443
No 153
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.30 E-value=2.3e+02 Score=25.41 Aligned_cols=90 Identities=10% Similarity=0.036 Sum_probs=45.2
Q ss_pred EEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCC
Q 028280 7 VVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQ 86 (211)
Q Consensus 7 Lv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~ 86 (211)
+++..|+..+-.+...|..+.. .|-++.++..-+. .. ...++++.+++. .++.+.......+
T Consensus 246 LVGptGvGKTTTiaKLA~~L~~-~GkkVglI~aDt~-Ri--------------aAvEQLk~yae~-lgipv~v~~d~~~- 307 (436)
T PRK11889 246 LIGPTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHS-RI--------------GTVQQLQDYVKT-IGFEVIAVRDEAA- 307 (436)
T ss_pred EECCCCCcHHHHHHHHHHHHHH-cCCcEEEEecCCc-ch--------------HHHHHHHHHhhh-cCCcEEecCCHHH-
Confidence 4455666666666666666653 3555554433211 10 011223334333 2555543211122
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCccc
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLH 114 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~ 114 (211)
..++|..+.+..+.|+|++.+-|++...
T Consensus 308 L~~aL~~lk~~~~~DvVLIDTaGRs~kd 335 (436)
T PRK11889 308 MTRALTYFKEEARVDYILIDTAGKNYRA 335 (436)
T ss_pred HHHHHHHHHhccCCCEEEEeCccccCcC
Confidence 3444433333346899999999987643
No 154
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=44.64 E-value=37 Score=24.53 Aligned_cols=107 Identities=21% Similarity=0.055 Sum_probs=59.6
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE---
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII--- 80 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~--- 80 (211)
|||++++-||.....+..+...+.+. |.++.++- .. ...+.... .. .. +-++...
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~-g~~v~vv~---S~-----~A~~~~~~--------~~-~~----~~~v~~~~~~ 58 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA-GWEVRVVL---SP-----SAERFVTP--------EG-LT----GEPVYTDWDT 58 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT-TSEEEEEE---SH-----HHHHHSHH--------HG-HC----CSCEECTHCT
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC-CCEEEEEE---CC-----cHHHHhhh--------hc-cc----cchhhhcccc
Confidence 68999999999988888877777765 77754432 21 11111111 00 10 1111111
Q ss_pred EeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cc---cHHHHHHccC---CceEEEEcC
Q 028280 81 VTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LA---MSHNDISSSF---NCRVLAIKQ 136 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~g---s~a~~vl~~a---~~PVLvV~~ 136 (211)
...+. ....+.- ++ .+|++|+..-..+.+.+ .| +....++..+ +.||++++.
T Consensus 59 ~~~~~-~~~~~~~-~~--~~D~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvvi~P~ 118 (129)
T PF02441_consen 59 WDRGD-PAEHIEL-SR--WADAMVVAPATANTLAKIANGIADNLLTRVALAALKEGKPVVIAPA 118 (129)
T ss_dssp CSTTT-TTCHHHH-HH--TESEEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEEEEEE
T ss_pred CCCCC-CcCcccc-cc--cCCEEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeEEEEe
Confidence 11222 3333332 33 48999999877766665 33 3555666666 999999874
No 155
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=43.70 E-value=2.6e+02 Score=25.57 Aligned_cols=39 Identities=8% Similarity=0.101 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
..++.+.+++.++|||+=+++. .++.++.++|.+.|..+
T Consensus 351 ~~el~~~i~~~~PdliiG~~~e-----------r~~a~~lgiP~~~i~~P 389 (519)
T PRK02910 351 YLEVEDAIAEAAPELVLGTQME-----------RHSAKRLGIPCAVISAP 389 (519)
T ss_pred HHHHHHHHHhcCCCEEEEcchH-----------HHHHHHcCCCEEEeccc
Confidence 3688888889999999833321 24667788888877543
No 156
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=43.57 E-value=1.8e+02 Score=23.86 Aligned_cols=49 Identities=16% Similarity=0.138 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCC
Q 028280 89 ARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
-+.++.|++.++|-|++.......... +-.--..|+..+++||++-..+
T Consensus 85 ~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~P 135 (284)
T cd00950 85 IELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVP 135 (284)
T ss_pred HHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEECh
Confidence 344588889999999988764332222 4445557788889999987654
No 157
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=43.55 E-value=1.9e+02 Score=26.19 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=59.3
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc--chHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHH
Q 028280 11 EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR--NRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEG 88 (211)
Q Consensus 11 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~ 88 (211)
|..-..-.||.+|.+..... +.+|.+.++.... .......+. +.++.|++.+. ...+...+..|+ +.
T Consensus 11 DLR~~DN~aL~~A~~~~~~~---~~~vfi~~~~~~~~~~~~~~~Fl~----~sL~~L~~~L~---~~gi~L~v~~~~-~~ 79 (461)
T COG0415 11 DLRLTDNAALAAACQSGQPV---IIAVFILDPEQLGHASPRHAAFLL----QSLQALQQSLA---ELGIPLLVREGD-PE 79 (461)
T ss_pred ccccCChHHHHHHHhcCCCc---eEEEEEechhhccccCHHHHHHHH----HHHHHHHHHHH---HcCCceEEEeCC-HH
Confidence 44444556777777666532 3566666653321 111112222 22222333333 233455678899 99
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEE
Q 028280 89 ARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV 134 (211)
..+.+++++.+++-|+-...- ....+ --.....-+...++-+..+
T Consensus 80 ~~l~~~~~~~~~~~v~~n~~~-~~~~~~rD~al~~~l~~~gi~~~~~ 125 (461)
T COG0415 80 QVLPELAKQLAATTVFWNRDY-EEWERQRDAALAQPLTEVGIAVHSF 125 (461)
T ss_pred HHHHHHHHHhCcceEEeeeee-chhHHHHHHHHHHHHHhcCceEEEe
Confidence 999999999998888776544 22222 1222233444555555543
No 158
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=43.41 E-value=2.1e+02 Score=24.56 Aligned_cols=34 Identities=18% Similarity=0.010 Sum_probs=25.9
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEec
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFP 41 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~ 41 (211)
++|+|++.+..+|-.++..+.+ .|-++..+|+..
T Consensus 1 ~kVlValSGGvDSsvla~lL~~----~G~~V~~v~~~~ 34 (346)
T PRK00143 1 KRVVVGMSGGVDSSVAAALLKE----QGYEVIGVFMKL 34 (346)
T ss_pred CeEEEEecCCHHHHHHHHHHHH----cCCcEEEEEEeC
Confidence 4899999999888877655443 466788888875
No 159
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=43.16 E-value=2.3e+02 Score=24.92 Aligned_cols=22 Identities=18% Similarity=0.005 Sum_probs=17.3
Q ss_pred HHHHhhccCCCEEEEEEEecCC
Q 028280 22 WALQNLLRFGDVVTLLHVFPSL 43 (211)
Q Consensus 22 ~A~~la~~~~a~l~llhV~~~~ 43 (211)
-|..++-+.|.++..+|...++
T Consensus 190 VA~~l~mkRG~~v~~v~f~~~p 211 (383)
T COG0301 190 VAAWLMMKRGVEVIPVHFGNPP 211 (383)
T ss_pred HHHHHHHhcCCEEEEEEEcCCC
Confidence 4566777899999999996543
No 160
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=43.02 E-value=2.1e+02 Score=24.27 Aligned_cols=38 Identities=8% Similarity=0.071 Sum_probs=28.0
Q ss_pred CCEEEEecCCC---Ccccc-ccc-HHHHHHccCCceEEEEcCC
Q 028280 100 ASALVVGLHDR---SFLHK-LAM-SHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 100 adLIVmG~~~~---~~~~~-~gs-~a~~vl~~a~~PVLvV~~~ 137 (211)
+|.+++|+..- +++-. .|+ ...-+.++.+.||+|+-+.
T Consensus 189 vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~ 231 (310)
T PRK08535 189 VDKVVVGADAITANGAVINKIGTSQIALAAHEARVPFMVAAET 231 (310)
T ss_pred CCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEeccc
Confidence 89999999863 33444 888 3335667789999999653
No 161
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=42.81 E-value=35 Score=27.06 Aligned_cols=40 Identities=20% Similarity=0.294 Sum_probs=25.4
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEec
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGL 107 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~ 107 (211)
++++..+. +..+++. ++|. +...-+..+.+.++|.+|+|+
T Consensus 156 l~~~~~~~-~~~~~I~-vDGG-I~~~~~~~~~~aGad~~V~Gs 195 (201)
T PF00834_consen 156 LRKLIPEN-GLDFEIE-VDGG-INEENIKQLVEAGADIFVAGS 195 (201)
T ss_dssp HHHHHHHH-TCGSEEE-EESS-ESTTTHHHHHHHT--EEEESH
T ss_pred HHHHHHhc-CCceEEE-EECC-CCHHHHHHHHHcCCCEEEECH
Confidence 44454443 4455554 5677 777777777788999999996
No 162
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=42.63 E-value=2e+02 Score=23.93 Aligned_cols=61 Identities=11% Similarity=0.022 Sum_probs=38.2
Q ss_pred CCcEEEEEeeCCCHHHH--HHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGAR--IAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~--I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+.+-.-+.. + ..++ +.+.|++.++|-+++-..-...... +-.--..|+..+++||++-..
T Consensus 69 ~~pvi~gv~~-~-t~~~i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn~ 133 (289)
T cd00951 69 RVPVLAGAGY-G-TATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNR 133 (289)
T ss_pred CCCEEEecCC-C-HHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 4554444432 3 5544 4488889999999997654322221 333444677788999999863
No 163
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=42.62 E-value=1.3e+02 Score=23.59 Aligned_cols=49 Identities=8% Similarity=-0.011 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCC---ceEEEEc
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFN---CRVLAIK 135 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~---~PVLvV~ 135 (211)
+.+.+++.+++.++|+|.+..........+..+.+.+-...+ ++|++--
T Consensus 121 p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG 172 (201)
T cd02070 121 PPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGG 172 (201)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEEC
Confidence 789999999999999999998655544445555555544432 4555543
No 164
>PRK11106 queuosine biosynthesis protein QueC; Provisional
Probab=42.54 E-value=1.8e+02 Score=23.52 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=29.1
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~ 43 (211)
++++|+.-+.-+|-..+.||.+. +.++..|++....
T Consensus 2 ~kvvVl~SGG~DSt~~l~~a~~~----~~~v~alt~dygq 37 (231)
T PRK11106 2 KRAVVVFSGGQDSTTCLIQALQQ----YDEVHCVTFDYGQ 37 (231)
T ss_pred CcEEEEeeCcHHHHHHHHHHHhc----CCeEEEEEEEeCC
Confidence 78999999999999999888542 4578889888653
No 165
>PRK08576 hypothetical protein; Provisional
Probab=42.12 E-value=2.6e+02 Score=25.12 Aligned_cols=86 Identities=20% Similarity=0.157 Sum_probs=50.1
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE-E--
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII-V-- 81 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~-v-- 81 (211)
+|+|++.|..+|-.++..+.+... .+.++++...... .. . .+.+.++++.+ |+++... +
T Consensus 236 rVvVafSGGKDStvLL~La~k~~~----~V~aV~iDTG~e~--pe---t--------~e~~~~lae~L-GI~lii~~v~~ 297 (438)
T PRK08576 236 TVIVPWSGGKDSTAALLLAKKAFG----DVTAVYVDTGYEM--PL---T--------DEYVEKVAEKL-GVDLIRAGVDV 297 (438)
T ss_pred CEEEEEcChHHHHHHHHHHHHhCC----CCEEEEeCCCCCC--hH---H--------HHHHHHHHHHc-CCCEEEcccCH
Confidence 799999999999988877666432 3777777543221 11 0 11233333333 5544330 0
Q ss_pred -----eeCC----------CHHHHHHHHHHHhCCCEEEEecC
Q 028280 82 -----TEGD----------QEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 82 -----~~G~----------~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
..|. .-.+.+.+++++.+++.++.|.+
T Consensus 298 ~~~~~~~g~p~~~~rcCt~lK~~pL~raake~g~~~iatG~R 339 (438)
T PRK08576 298 PMPIEKYGMPTHSNRWCTKLKVEALEEAIRELEDGLLVVGDR 339 (438)
T ss_pred HHHhhhcCCCCcccchhhHHHHHHHHHHHHhCCCCEEEEEee
Confidence 0111 01346778888889999999964
No 166
>PRK02929 L-arabinose isomerase; Provisional
Probab=42.01 E-value=2e+02 Score=26.29 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhC----CCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 88 GARIAALVREIG----ASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 88 ~~~I~~~a~~~~----adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.++|.+.+++.+ +|.||+--+.-+.- +..-.+++..++|||+...
T Consensus 57 ~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a----~~~i~~~~~l~~PvL~~~~ 105 (499)
T PRK02929 57 PDEITAVCREANYDDNCAGVITWMHTFSPA----KMWIRGLSALQKPLLHLHT 105 (499)
T ss_pred HHHHHHHHHHccccCCCcEEEEccCCCchH----HHHHHHHHHcCCCEEEEec
Confidence 566667777766 99999877644432 2444678899999999875
No 167
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=41.86 E-value=47 Score=27.26 Aligned_cols=43 Identities=21% Similarity=0.242 Sum_probs=31.6
Q ss_pred HHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcCCCC
Q 028280 92 AALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQPAA 139 (211)
Q Consensus 92 ~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~~~~ 139 (211)
....+++++|.||.=..|..++.. + ...+..++||++|+.+..
T Consensus 183 ~aL~~~~~i~~lVtK~SG~~g~~eKi-----~AA~~lgi~vivI~RP~~ 226 (248)
T PRK08057 183 RALLRQHRIDVVVTKNSGGAGTEAKL-----EAARELGIPVVMIARPAL 226 (248)
T ss_pred HHHHHHcCCCEEEEcCCCchhhHHHH-----HHHHHcCCeEEEEeCCCC
Confidence 366778999999987666543321 2 567888999999998754
No 168
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=41.70 E-value=1.8e+02 Score=23.15 Aligned_cols=100 Identities=13% Similarity=0.112 Sum_probs=52.3
Q ss_pred HHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee-C-------C-CHHHH
Q 028280 20 LLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE-G-------D-QEGAR 90 (211)
Q Consensus 20 l~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~-G-------~-~~~~~ 90 (211)
..+.+..+...|+.-..+.+...... .....+...++.+.|.++ ++++-..+.. | + +....
T Consensus 78 ~~~~v~~a~~~Ga~~v~~~~~~~~~~---------~~~~~~~i~~v~~~~~~~-g~~~iie~~~~g~~~~~~~~~~~i~~ 147 (235)
T cd00958 78 LVASVEDAVRLGADAVGVTVYVGSEE---------EREMLEELARVAAEAHKY-GLPLIAWMYPRGPAVKNEKDPDLIAY 147 (235)
T ss_pred hhcCHHHHHHCCCCEEEEEEecCCch---------HHHHHHHHHHHHHHHHHc-CCCEEEEEeccCCcccCccCHHHHHH
Confidence 33345555566776555555433111 112223344455666553 6665444322 1 1 01222
Q ss_pred HHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEc
Q 028280 91 IAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 91 I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~ 135 (211)
..+.+.+.++|.|-.+..+ .+ ...+++.+..++||+++-
T Consensus 148 ~~~~a~~~GaD~Ik~~~~~--~~----~~~~~i~~~~~~pvv~~G 186 (235)
T cd00958 148 AARIGAELGADIVKTKYTG--DA----ESFKEVVEGCPVPVVIAG 186 (235)
T ss_pred HHHHHHHHCCCEEEecCCC--CH----HHHHHHHhcCCCCEEEeC
Confidence 2445778899999886322 11 234578888899987663
No 169
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=41.22 E-value=1.9e+02 Score=23.32 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=52.6
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G 84 (211)
++++...+.++|-.|+.++.+. ..-+.|+++.+..... .. ... .-.+.++..++.. |++.......|
T Consensus 2 kv~vl~SGGKDS~lAl~~~~~~----~~V~~L~~~~~~~~~s-~~-~h~------~~~~~~~~qA~al-giPl~~~~~~~ 68 (222)
T TIGR00289 2 KVAVLYSGGKDSILALYKALEE----HEVISLVGVFSENEES-YM-FHS------PNLHLTDLVAEAV-GIPLIKLYTSG 68 (222)
T ss_pred eEEEEecCcHHHHHHHHHHHHc----CeeEEEEEEcCCCCCc-cc-ccc------CCHHHHHHHHHHc-CCCeEEEEcCC
Confidence 5788889999999999988773 3456666666543110 00 000 0001122222223 66665444444
Q ss_pred C--CHHHHHHHHHHHhCCCEEEEecCC
Q 028280 85 D--QEGARIAALVREIGASALVVGLHD 109 (211)
Q Consensus 85 ~--~~~~~I~~~a~~~~adLIVmG~~~ 109 (211)
. +-.+.+.+.+++.+++-||-|.=-
T Consensus 69 ~~e~~~~~l~~~l~~~gv~~vv~GdI~ 95 (222)
T TIGR00289 69 EEEKEVEDLAGQLGELDVEALCIGAIE 95 (222)
T ss_pred chhHHHHHHHHHHHHcCCCEEEECccc
Confidence 2 245666666777789999999754
No 170
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=41.03 E-value=96 Score=19.83 Aligned_cols=32 Identities=25% Similarity=0.426 Sum_probs=21.8
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEE
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVT 35 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ 35 (211)
++|+++.|.+.....+...+.......+..+.
T Consensus 44 ~~vii~~D~D~~G~~~~~~~~~~~~~~~~~~~ 75 (79)
T cd01029 44 RTVILAFDNDEAGKKAAARALELLLALGGRVR 75 (79)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 77888888888777777666666665544443
No 171
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=40.43 E-value=73 Score=25.37 Aligned_cols=49 Identities=20% Similarity=0.206 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+.++..+.+.+.|.|.+|.+..-....+..+...+-++.++||++.+..
T Consensus 14 ~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvilfp~~ 62 (205)
T TIGR01769 14 EKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVILFPGN 62 (205)
T ss_pred HHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEEECCC
Confidence 3455667778899999997621111225555555555578999998653
No 172
>PLN02828 formyltetrahydrofolate deformylase
Probab=40.30 E-value=2.2e+02 Score=23.74 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=61.1
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
.++|.|-+.++..+..+|-++.+.-. .++++.++-...+.+.. . .+.+.+.++ |+++...-.
T Consensus 70 ~~riavlvSg~g~nl~~ll~~~~~g~-l~~eI~~ViSn~~~~~~-a---------------~~~~~A~~~-gIP~~~~~~ 131 (268)
T PLN02828 70 KYKIAVLASKQDHCLIDLLHRWQDGR-LPVDITCVISNHERGPN-T---------------HVMRFLERH-GIPYHYLPT 131 (268)
T ss_pred CcEEEEEEcCCChhHHHHHHhhhcCC-CCceEEEEEeCCCCCCC-c---------------hHHHHHHHc-CCCEEEeCC
Confidence 45899999999999999888765543 56776655554432111 0 133333333 787764322
Q ss_pred -eCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 83 -EGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 83 -~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
..++..+.+++..+ ++|+||+....+-. +..++...+-.++=+.+
T Consensus 132 ~~~~~~e~~~~~~l~--~~DliVLAgym~IL-------~~~~l~~~~~riINIHp 177 (268)
T PLN02828 132 TKENKREDEILELVK--GTDFLVLARYMQIL-------SGNFLKGYGKDIINIHH 177 (268)
T ss_pred CCCCCHHHHHHHHHh--cCCEEEEeeehHhC-------CHHHHhhccCCEEEecC
Confidence 22213346666665 69999998654321 22455555555554443
No 173
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=40.23 E-value=1.9e+02 Score=22.91 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=22.5
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
.++|+.+.+.-+|-- |+.++.+.|.++..||...+
T Consensus 4 gk~l~LlSGGiDSpV----Aa~lm~krG~~V~~l~f~~~ 38 (197)
T PF02568_consen 4 GKALALLSGGIDSPV----AAWLMMKRGCEVIALHFDSP 38 (197)
T ss_dssp -EEEEE-SSCCHHHH----HHHHHHCBT-EEEEEEEE-T
T ss_pred ceEEEEecCCccHHH----HHHHHHHCCCEEEEEEEECC
Confidence 367777776666654 45566667999999999854
No 174
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=39.90 E-value=2.9e+02 Score=25.74 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=23.2
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDR 110 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~ 110 (211)
+.+.-+.+=.|. -.-+.+++|++.+.|+||+..|..
T Consensus 127 ~~~LiItvD~Gi-~~~e~i~~a~~~gidvIVtDHH~~ 162 (575)
T PRK11070 127 GAQLIVTVDNGI-SSHAGVAHAHALGIPVLVTDHHLP 162 (575)
T ss_pred CCCEEEEEcCCc-CCHHHHHHHHHCCCCEEEECCCCC
Confidence 444444444455 456666777888888888887743
No 175
>PRK08194 tartrate dehydrogenase; Provisional
Probab=39.71 E-value=1e+02 Score=26.77 Aligned_cols=79 Identities=10% Similarity=0.008 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
..+++.+++|.++|.+.+.+|+++|=...-. ....-..+.+.+..+++|+++++...++- .+-.++.
T Consensus 161 ~~~eRI~r~Af~~A~~r~~~Vt~v~KaNvl~-----------~t~~lf~~~~~eva~~yp~V~~~~~~vDa--~~~~Lv~ 227 (352)
T PRK08194 161 KGTERAMRYAFELAAKRRKHVTSATKSNGIV-----------HSMPFWDEVFQEVGKDYPEIETDSQHIDA--LAAFFVT 227 (352)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeCcchhh-----------hhHHHHHHHHHHHHhhCCCceeeehhHHH--HHHHHhh
Confidence 4578889999999988766677776432211 00111122344445557777766643322 2333333
Q ss_pred HHHHhCCCEEEEec
Q 028280 94 LVREIGASALVVGL 107 (211)
Q Consensus 94 ~a~~~~adLIVmG~ 107 (211)
-- .+.|.||+..
T Consensus 228 ~P--~~fDVIVt~N 239 (352)
T PRK08194 228 RP--EEFDVIVASN 239 (352)
T ss_pred Ch--hhCcEEEEcc
Confidence 32 3568666653
No 176
>PRK06801 hypothetical protein; Provisional
Probab=39.59 E-value=57 Score=27.41 Aligned_cols=50 Identities=6% Similarity=-0.150 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccc---cccHHHHHHccCCceEEEEcC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHK---LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~---~gs~a~~vl~~a~~PVLvV~~ 136 (211)
-..++++.|++.+..+|+..+.+...... ++.....+.+++.+||.+-=.
T Consensus 30 ~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlD 82 (286)
T PRK06801 30 FLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLD 82 (286)
T ss_pred HHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECC
Confidence 78999999999999999998877543222 677888899999999877543
No 177
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=39.44 E-value=2.5e+02 Score=24.18 Aligned_cols=57 Identities=7% Similarity=0.072 Sum_probs=36.8
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCC---Ccccc-cccH-HHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDR---SFLHK-LAMS-HNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~---~~~~~-~gs~-a~~vl~~a~~PVLvV~~ 136 (211)
|+++.. +.++ -...+ .++..+|++++|+..- +.+.. .|+- ..-+.++.++||+|+-+
T Consensus 206 GI~vtl--I~Ds-av~~~---m~~~~vd~VivGAd~v~~nG~v~nkiGT~~lA~~Ak~~~vPfyV~a~ 267 (331)
T TIGR00512 206 GIPATL--ITDS-MAAHL---MKHGEVDAVIVGADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAP 267 (331)
T ss_pred CCCEEE--Eccc-HHHHH---hcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEecc
Confidence 776653 3333 33333 3345799999999873 33444 8883 33566888999999865
No 178
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=39.40 E-value=2.2e+02 Score=23.57 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCc-cchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNS-RNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIA 92 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~ 92 (211)
++.+.++++|..+.. .|.++.......+-.. ..+. . ...+-...+++.+++. |+.+-+.+.+-. -.+.+.
T Consensus 38 e~~~~~~~~A~~lk~-~g~~~~r~~~~kpRTs~~s~~--G----~g~~gl~~l~~~~~~~-Gl~~~te~~d~~-~~~~l~ 108 (266)
T PRK13398 38 ESEEQMVKVAEKLKE-LGVHMLRGGAFKPRTSPYSFQ--G----LGEEGLKILKEVGDKY-NLPVVTEVMDTR-DVEEVA 108 (266)
T ss_pred CCHHHHHHHHHHHHH-cCCCEEEEeeecCCCCCCccC--C----cHHHHHHHHHHHHHHc-CCCEEEeeCChh-hHHHHH
Confidence 345677888877777 6788877777764332 1111 0 1123344466666664 888888766655 444443
Q ss_pred HHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 93 ALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 93 ~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+. +|++-+|++.-.... .-+.+ .+.+.||++=+.
T Consensus 109 ----~~-vd~~kIga~~~~n~~----LL~~~-a~~gkPV~lk~G 142 (266)
T PRK13398 109 ----DY-ADMLQIGSRNMQNFE----LLKEV-GKTKKPILLKRG 142 (266)
T ss_pred ----Hh-CCEEEECcccccCHH----HHHHH-hcCCCcEEEeCC
Confidence 44 699999987644321 11122 345666666443
No 179
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=39.21 E-value=2.8e+02 Score=24.63 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=47.2
Q ss_pred CcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc----cccHHHHHHccC---CceEEEEcCCCC
Q 028280 75 TNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK----LAMSHNDISSSF---NCRVLAIKQPAA 139 (211)
Q Consensus 75 i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~----~gs~a~~vl~~a---~~PVLvV~~~~~ 139 (211)
++......... ..+++..++.+.++..+|+|..-.+..+. +++++..+.++- .-|++++-.++.
T Consensus 248 v~~~iIasn~~-sleaaa~~~~~~G~~a~Il~d~ieGEArevg~v~asiarev~~~g~Pf~~P~~llsGGET 318 (422)
T COG2379 248 VENRIIASNRL-SLEAAASEARALGFKAVILGDTIEGEAREVGRVHASIAREVARRGRPFKKPVVLLSGGET 318 (422)
T ss_pred ceeEEEechHH-HHHHHHHHHHhcCCeeEEeeccccccHHHHHHHHHHHHHHHHHcCCCCCCCEEEEECCce
Confidence 33333333344 67889999999999999999987776554 677888888877 689988876543
No 180
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=39.17 E-value=1.1e+02 Score=21.60 Aligned_cols=53 Identities=15% Similarity=0.217 Sum_probs=34.3
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
|.++++.-...+ ++.++.. ++|.+.+|.+-+-.+. ..++++....+||-+|+.
T Consensus 29 g~~~~I~A~s~~----e~~~~~~--~~DvvLlGPQv~y~~~----~~~~~~~~~giPV~vI~~ 81 (102)
T COG1440 29 GKDVTIEAYSET----ELSEYID--NADVVLLGPQVRYMLK----QLKEAAEEKGIPVEVIDM 81 (102)
T ss_pred CCceEEEEechh----HHHHhhh--cCCEEEEChHHHHHHH----HHHHHhcccCCCeEEeCH
Confidence 777766644333 2233322 7899999986443332 345777788899999975
No 181
>PRK04527 argininosuccinate synthase; Provisional
Probab=39.04 E-value=2.8e+02 Score=24.61 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=29.8
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
|.++|+|+.-+.-+|-.++.|+.+ .|.+++.+++...
T Consensus 1 ~~~kVvVA~SGGvDSSvla~~l~e----~G~~Viavt~d~g 37 (400)
T PRK04527 1 SSKDIVLAFSGGLDTSFCIPYLQE----RGYAVHTVFADTG 37 (400)
T ss_pred CCCcEEEEEcCChHHHHHHHHHHH----cCCcEEEEEEEeC
Confidence 457899999999999988888666 3678888888755
No 182
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=38.89 E-value=1.4e+02 Score=26.83 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=23.2
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
|||+||++ +.++.+...++++.+ .|-++.+++..+.
T Consensus 1 ~~~kvLi~-~~geia~~ii~a~~~----~Gi~~v~v~~~~d 36 (472)
T PRK07178 1 MIKKILIA-NRGEIAVRIVRACAE----MGIRSVAIYSEAD 36 (472)
T ss_pred CCcEEEEE-CCcHHHHHHHHHHHH----cCCeEEEEeCCCc
Confidence 58999998 555656665555544 4666666665543
No 183
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=38.89 E-value=1e+02 Score=21.08 Aligned_cols=65 Identities=15% Similarity=0.200 Sum_probs=38.2
Q ss_pred HHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCCC
Q 028280 63 LSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 63 ~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
+.+++.+++. |+++++. ... . ..+.... .++|+|+++.+-...+.+ .+..+...++||.++++..
T Consensus 17 ~ki~~~~~~~-~~~~~v~--~~~-~-~~~~~~~--~~~Diil~~Pqv~~~~~~----i~~~~~~~~~pv~~I~~~~ 81 (96)
T cd05564 17 KKMKKAAEKR-GIDAEIE--AVP-E-SELEEYI--DDADVVLLGPQVRYMLDE----VKKKAAEYGIPVAVIDMMD 81 (96)
T ss_pred HHHHHHHHHC-CCceEEE--Eec-H-HHHHHhc--CCCCEEEEChhHHHHHHH----HHHHhccCCCcEEEcChHh
Confidence 3466666653 6665443 333 2 2233333 468999999876654431 1233456789999998643
No 184
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=38.87 E-value=2.5e+02 Score=24.05 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=24.2
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
.++|++.|...|-.++..+.. ..|.++.++|+...
T Consensus 61 D~iV~lSGGkDSs~la~ll~~---~~gl~~l~vt~~~~ 95 (343)
T TIGR03573 61 DCIIGVSGGKDSTYQAHVLKK---KLGLNPLLVTVDPG 95 (343)
T ss_pred CEEEECCCCHHHHHHHHHHHH---HhCCceEEEEECCC
Confidence 489999999888877655432 34666767777643
No 185
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=38.44 E-value=1.2e+02 Score=25.52 Aligned_cols=51 Identities=6% Similarity=-0.055 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHhCCCEEEEecCCCCcc---cccccHHHHHHccCCceEEEEcC
Q 028280 86 QEGARIAALVREIGASALVVGLHDRSFL---HKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 86 ~~~~~I~~~a~~~~adLIVmG~~~~~~~---~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.-..++++.|++.+..+|+..+.+.-.. ..+......+.+++.+||.+-=.
T Consensus 29 e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPValHLD 82 (284)
T PRK12857 29 EIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVALHLD 82 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEEECC
Confidence 3789999999999999999988764322 12666677888999999987544
No 186
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=38.15 E-value=1.7e+02 Score=21.96 Aligned_cols=41 Identities=10% Similarity=0.156 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
....|.+.+++.++|+|++|....+. .++-++..+.++|++
T Consensus 71 ~a~al~~~i~~~~p~~Vl~~~t~~g~-----~la~rlAa~L~~~~v 111 (168)
T cd01715 71 YAPALVALAKKEKPSHILAGATSFGK-----DLAPRVAAKLDVGLI 111 (168)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcccc-----chHHHHHHHhCCCce
Confidence 35678888888899999999876432 234445555554443
No 187
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=38.07 E-value=81 Score=22.62 Aligned_cols=47 Identities=23% Similarity=0.443 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+++-.+ -+.+++.||+|+...+.+. ++.-+...++.-.|-|.+.|-+
T Consensus 52 eEle~~-lee~~E~ivvGTG~~G~l~-l~~ea~e~~r~k~~~vi~~pT~ 98 (121)
T COG1504 52 EELEEL-LEEGPEVIVVGTGQSGMLE-LSEEAREFFRKKGCEVIELPTP 98 (121)
T ss_pred HHHHHH-HhcCCcEEEEecCceeEEE-eCHHHHHHHHhcCCeEEEeCCH
Confidence 344444 3468999999986665543 6667788899999999988754
No 188
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=37.80 E-value=1.3e+02 Score=27.34 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=27.6
Q ss_pred CCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCC
Q 028280 73 FNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHD 109 (211)
Q Consensus 73 ~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~ 109 (211)
+.-.+.+++..+. ..+.|..-+.+.++|+|++..+.
T Consensus 302 ~~~~I~VKlva~~-~v~~iaagvakA~AD~I~IdG~~ 337 (485)
T COG0069 302 PWAKISVKLVAEH-GVGTIAAGVAKAGADVITIDGAD 337 (485)
T ss_pred CCCeEEEEEeccc-chHHHHhhhhhccCCEEEEcCCC
Confidence 3445778888888 88888875667799999997654
No 189
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=37.53 E-value=2.4e+02 Score=23.37 Aligned_cols=81 Identities=15% Similarity=0.021 Sum_probs=41.5
Q ss_pred HHHHHHhhccCCCEEEEEEEecCCCccc-hHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHh
Q 028280 20 LLWALQNLLRFGDVVTLLHVFPSLNSRN-RKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREI 98 (211)
Q Consensus 20 l~~A~~la~~~~a~l~llhV~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~ 98 (211)
+..++..+...|....=||...+..... ....... +...++.+.+++. . ++.+-.++..+.+-..++++.+.+.
T Consensus 104 ~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~-~~~~eiv~~vr~~---~-~~Pv~vKl~~~~~~~~~~a~~~~~~ 178 (296)
T cd04740 104 FVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDP-EAVAEIVKAVKKA---T-DVPVIVKLTPNVTDIVEIARAAEEA 178 (296)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCH-HHHHHHHHHHHhc---c-CCCEEEEeCCCchhHHHHHHHHHHc
Confidence 3345555565677777777766543210 0000000 1111222222222 1 5566666554432356778888889
Q ss_pred CCCEEEE
Q 028280 99 GASALVV 105 (211)
Q Consensus 99 ~adLIVm 105 (211)
++|.|++
T Consensus 179 G~d~i~~ 185 (296)
T cd04740 179 GADGLTL 185 (296)
T ss_pred CCCEEEE
Confidence 9998877
No 190
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=37.46 E-value=2.3e+02 Score=23.17 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=22.9
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
++.|++|....... +++++..+..+..+-|.-+
T Consensus 13 ~livaLD~~~~~~~-----~~~~~~~~~~~~~~Kvg~~ 45 (240)
T COG0284 13 RLIVALDVPTEEEA-----LAFVDKLGPTVDFVKVGKP 45 (240)
T ss_pred CeEEEECCCCHHHH-----HHHHHHhhccccEEEEchH
Confidence 49999999876543 6666666666666776643
No 191
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=37.42 E-value=57 Score=27.37 Aligned_cols=50 Identities=8% Similarity=0.064 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCc---ccccccHHHHHHccCCceEEEEcC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSF---LHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~---~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
-..++++.|++.+.-+|+..+.+.-. ...+......+.+++.+||.+-=.
T Consensus 28 ~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLD 80 (282)
T TIGR01858 28 TIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLD 80 (282)
T ss_pred HHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECC
Confidence 78999999999999999998876532 222667788899999999987543
No 192
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=37.32 E-value=72 Score=26.05 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
..+.|.+.+.+.+-|.|++|...--..+.+-.+.+.+-...+.||++.+..
T Consensus 29 ~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~ 79 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGS 79 (240)
T ss_pred ccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCC
Confidence 678899999999999999997543322224556666766889999998764
No 193
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=37.30 E-value=2.7e+02 Score=23.97 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=36.0
Q ss_pred HHHHHHhhhCCCcEEEEEeeCCC---HHHHHHHHHHHhCCCEEE-EecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 64 SFKDICNDFFNTNVEIIVTEGDQ---EGARIAALVREIGASALV-VGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 64 ~l~~~~~~~~~i~~~~~v~~G~~---~~~~I~~~a~~~~adLIV-mG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+.+.+++ .++.+......|+. ..+.+.+.+++.++|.|| +|... ...++..+....+.|++.|+-
T Consensus 47 ~v~~~l~~-~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGs------v~D~aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 47 RVEASLKE-AGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGK------TLDTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred HHHHHHHh-CCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChH------HHHHHHHHHHHcCCCEEEeCC
Confidence 34444443 25555443445551 245666777788999887 44311 112333343445789999874
No 194
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=37.28 E-value=2.1e+02 Score=23.99 Aligned_cols=93 Identities=18% Similarity=0.196 Sum_probs=49.1
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G 84 (211)
+|-+.+.-..+++.-+.-|-.+.+.+|.. .+.|+.-+....... ...+.++.+-..+..+...|...
T Consensus 4 kIGivTgtvSq~ed~~r~Ae~l~~~Yg~~-~I~h~tyPdnf~~e~------------EttIskI~~lAdDp~mKaIVv~q 70 (275)
T PF12683_consen 4 KIGIVTGTVSQSEDEYRGAEELIKKYGDV-MIKHVTYPDNFMSEQ------------ETTISKIVSLADDPDMKAIVVSQ 70 (275)
T ss_dssp EEEEEE--TTT-HHHHHHHHHHHHHHHHH-EEEEEE--TTGGGCH------------HHHHHHHHGGGG-TTEEEEEEE-
T ss_pred EEEEEeCCcccChHHHHHHHHHHHHhCcc-eEEEEeCCCcccchH------------HHHHHHHHHhccCCCccEEEEeC
Confidence 56677776666777777777777777765 788888765543221 11122333212245566666554
Q ss_pred CCHH-HHHHHHHHHhCCCEEEEecCCC
Q 028280 85 DQEG-ARIAALVREIGASALVVGLHDR 110 (211)
Q Consensus 85 ~~~~-~~I~~~a~~~~adLIVmG~~~~ 110 (211)
..++ -+..+-.++...|+|.+....+
T Consensus 71 ~vpGt~~af~kIkekRpDIl~ia~~~~ 97 (275)
T PF12683_consen 71 AVPGTAEAFRKIKEKRPDILLIAGEPH 97 (275)
T ss_dssp SS---HHHHHHHHHH-TTSEEEESS--
T ss_pred CCcchHHHHHHHHhcCCCeEEEcCCCc
Confidence 4132 3344667888899999987654
No 195
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=37.17 E-value=2.3e+02 Score=26.36 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=42.9
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHH---HHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGAR---IAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~---I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
....++++ |++++..|..-....+. +++.+++.+++.+|.++.....+ +.-+...+.+||+=|+..
T Consensus 429 ~~~~l~~~-g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l------~~~~a~~t~~pvi~vp~~ 497 (577)
T PLN02948 429 AAEILDSF-GVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHL------PGMVASMTPLPVIGVPVK 497 (577)
T ss_pred HHHHHHHc-CCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccc------hHHHhhccCCCEEEcCCC
Confidence 33444444 88888887664433444 44555667899888887654433 234667889999999864
No 196
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=36.71 E-value=94 Score=25.49 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=13.3
Q ss_pred HHHccCCceEEEEcCCCCCC
Q 028280 122 DISSSFNCRVLAIKQPAASP 141 (211)
Q Consensus 122 ~vl~~a~~PVLvV~~~~~~~ 141 (211)
+.+..++||+++|+.+..++
T Consensus 83 ~~L~~~~~p~~~vPG~~Dap 102 (255)
T PF14582_consen 83 RILGELGVPVFVVPGNMDAP 102 (255)
T ss_dssp HHHHCC-SEEEEE--TTS-S
T ss_pred HHHHhcCCcEEEecCCCCch
Confidence 67889999999999766554
No 197
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=36.59 E-value=2.2e+02 Score=22.66 Aligned_cols=84 Identities=13% Similarity=0.029 Sum_probs=46.3
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G 84 (211)
+|.|-+.++.....++-.+.+--. .++++ +.|+...+.. ...+++.+. |+++...-...
T Consensus 1 ki~vl~Sg~Gsn~~al~~~~~~~~-l~~~i--~~visn~~~~-----------------~~~~~A~~~-gIp~~~~~~~~ 59 (207)
T PLN02331 1 KLAVFVSGGGSNFRAIHDACLDGR-VNGDV--VVVVTNKPGC-----------------GGAEYAREN-GIPVLVYPKTK 59 (207)
T ss_pred CEEEEEeCCChhHHHHHHHHHcCC-CCeEE--EEEEEeCCCC-----------------hHHHHHHHh-CCCEEEecccc
Confidence 466777777777777766644332 33444 4444432211 012333333 77764321111
Q ss_pred ---CC-HHHHHHHHHHHhCCCEEEEecCC
Q 028280 85 ---DQ-EGARIAALVREIGASALVVGLHD 109 (211)
Q Consensus 85 ---~~-~~~~I~~~a~~~~adLIVmG~~~ 109 (211)
.+ -.+++.+..+++++|++|+....
T Consensus 60 ~~~~~~~~~~~~~~l~~~~~Dliv~agy~ 88 (207)
T PLN02331 60 GEPDGLSPDELVDALRGAGVDFVLLAGYL 88 (207)
T ss_pred CCCcccchHHHHHHHHhcCCCEEEEeCcc
Confidence 00 14578888899999999997643
No 198
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=36.32 E-value=2.4e+02 Score=23.07 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCC
Q 028280 89 ARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
-...+.+++.++|-+++.......... +-.--..|+...+.|+++-..+
T Consensus 82 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P 132 (281)
T cd00408 82 IELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIP 132 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 344577888999999998765433222 4444556777789999987654
No 199
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=36.21 E-value=2.9e+02 Score=23.91 Aligned_cols=33 Identities=18% Similarity=0.053 Sum_probs=25.9
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEe
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVF 40 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~ 40 (211)
++|+|++.+..+|-.++..+.+ .+-++..+|+.
T Consensus 1 ~kVlValSGGvDSsv~a~lL~~----~G~~V~~v~~~ 33 (352)
T TIGR00420 1 KKVIVGLSGGVDSSVSAYLLKQ----QGYEVVGVFMK 33 (352)
T ss_pred CeEEEEEeCCHHHHHHHHHHHH----cCCeEEEEEEE
Confidence 4799999999888887776555 36689999884
No 200
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=36.15 E-value=63 Score=27.17 Aligned_cols=55 Identities=11% Similarity=0.163 Sum_probs=41.4
Q ss_pred EeeCCCHHHHHHHHHHHhCCCEEEEecCCCC---cccccccHHHHHHccCCceEEEEcC
Q 028280 81 VTEGDQEGARIAALVREIGASALVVGLHDRS---FLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~---~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+..-+ ...++++.|++.+..+|+..+.+.- +...+......+.+++.+||.+-=.
T Consensus 25 ~~n~e-~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLD 82 (286)
T PRK12738 25 IHNAE-TIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLD 82 (286)
T ss_pred eCCHH-HHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECC
Confidence 34444 7899999999999999998776542 2222666778889999999988543
No 201
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=36.08 E-value=79 Score=27.44 Aligned_cols=21 Identities=5% Similarity=0.050 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhCCCEEEEec
Q 028280 87 EGARIAALVREIGASALVVGL 107 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~ 107 (211)
..+.+++.|++.++|+||++.
T Consensus 28 ~f~~~l~~a~~~~vD~vliAG 48 (390)
T COG0420 28 AFDELLEIAKEEKVDFVLIAG 48 (390)
T ss_pred HHHHHHHHHHHccCCEEEEcc
Confidence 345566666666667777665
No 202
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=36.06 E-value=1.4e+02 Score=21.21 Aligned_cols=53 Identities=8% Similarity=-0.002 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccc---cc------------cHHHHHHccCCceEEEEcCCCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHK---LA------------MSHNDISSSFNCRVLAIKQPAA 139 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~---~g------------s~a~~vl~~a~~PVLvV~~~~~ 139 (211)
-....-.......+|.||+.......+.- -| ..-+.++..+++|++-++....
T Consensus 45 ~~~~~~~~~~~~~vDFvv~d~~~~~p~~vIEld~~~h~~~~~~~rD~~k~~~l~~agiplir~~~~~~ 112 (126)
T PF10881_consen 45 ERKEAFNRINQKHVDFVVCDKRDGRPVAVIELDGSSHDQEKRQERDEFKDRVLKKAGIPLIRISPKDS 112 (126)
T ss_pred hHHHHHHHhcCCCccEEEEECCCCcEEEEEEecCccccchhhHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 45666677777899999999655443321 12 2566899999999999976443
No 203
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=35.97 E-value=60 Score=28.88 Aligned_cols=62 Identities=13% Similarity=0.096 Sum_probs=43.8
Q ss_pred CCcEEEEEeeCCCH--------HHHHHHHHHHhCCCEEEEecCCCCccc-c-cccHHHHHHccCCceEEEEc
Q 028280 74 NTNVEIIVTEGDQE--------GARIAALVREIGASALVVGLHDRSFLH-K-LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 74 ~i~~~~~v~~G~~~--------~~~I~~~a~~~~adLIVmG~~~~~~~~-~-~gs~a~~vl~~a~~PVLvV~ 135 (211)
+.++-..+.-|||- ...|++.+++.++|++|.|.-=.-+-. . -|.++..|-.+.++|++.--
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 43 DAEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 44555556666533 256889999999999999975332222 2 66688888889999998654
No 204
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=35.95 E-value=61 Score=28.87 Aligned_cols=62 Identities=8% Similarity=0.136 Sum_probs=43.7
Q ss_pred CCcEEEEEeeCCCH--------HHHHHHHHHHhCCCEEEEecCCCCccc-c-cccHHHHHHccCCceEEEEc
Q 028280 74 NTNVEIIVTEGDQE--------GARIAALVREIGASALVVGLHDRSFLH-K-LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 74 ~i~~~~~v~~G~~~--------~~~I~~~a~~~~adLIVmG~~~~~~~~-~-~gs~a~~vl~~a~~PVLvV~ 135 (211)
+.++...+.-|||- ...|++.+++.++|++|.|.-=.-+-. . -|.++..|-.+.++|++.--
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 43 DAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 44555556666533 256889999999999999975332221 2 66688888889999998654
No 205
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=35.81 E-value=1.9e+02 Score=25.30 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=30.9
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDR 110 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~ 110 (211)
+.++.+..++..+-+++..++ ..+.+...+.+.++|.|++...+-
T Consensus 194 I~~Lr~~~~~~pVgvKl~~~~-~~~~~~~~~~~ag~D~ItIDG~~G 238 (368)
T PF01645_consen 194 IEELRELNPGKPVGVKLVAGR-GVEDIAAGAAKAGADFITIDGAEG 238 (368)
T ss_dssp HHHHHHH-TTSEEEEEEE-ST-THHHHHHHHHHTT-SEEEEE-TT-
T ss_pred HHHHHhhCCCCcEEEEECCCC-cHHHHHHhhhhccCCEEEEeCCCC
Confidence 333333346889999999999 888888878888999999977653
No 206
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=35.49 E-value=1.1e+02 Score=24.01 Aligned_cols=41 Identities=5% Similarity=-0.086 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHcc
Q 028280 86 QEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSS 126 (211)
Q Consensus 86 ~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~ 126 (211)
-|.+.+++.+++.++|+|.+..........+..+.+.+-+.
T Consensus 122 vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 122 VPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHc
Confidence 37899999999999999999987665555455555554444
No 207
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=35.18 E-value=2.7e+02 Score=23.30 Aligned_cols=38 Identities=8% Similarity=0.057 Sum_probs=27.7
Q ss_pred CCEEEEecCCC---Ccccc-cccHH-HHHHccCCceEEEEcCC
Q 028280 100 ASALVVGLHDR---SFLHK-LAMSH-NDISSSFNCRVLAIKQP 137 (211)
Q Consensus 100 adLIVmG~~~~---~~~~~-~gs~a-~~vl~~a~~PVLvV~~~ 137 (211)
+|++++|+..- +.+-. .|+-. --+.++.++||+|+-+.
T Consensus 178 vd~VivGAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~~ 220 (275)
T PRK08335 178 ATLALVGADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAET 220 (275)
T ss_pred CCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECcc
Confidence 89999999862 33444 88833 35667888999999653
No 208
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=35.16 E-value=76 Score=26.56 Aligned_cols=50 Identities=8% Similarity=-0.096 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcc---cccccHHHHHHccCCceEEEEcC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFL---HKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~---~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
-..++++.|++.+.-+|+..+.+.-.. ..++.......+++.+||.+-=.
T Consensus 30 ~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~lHlD 82 (281)
T PRK06806 30 MVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAVHFD 82 (281)
T ss_pred HHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEEECC
Confidence 789999999999999999887754322 12666777888899999877543
No 209
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=35.13 E-value=66 Score=28.48 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHhCCCEEEEecCCCC
Q 028280 84 GDQEGARIAALVREIGASALVVGLHDRS 111 (211)
Q Consensus 84 G~~~~~~I~~~a~~~~adLIVmG~~~~~ 111 (211)
|+|+ +++++.+++.++.+|.+.+.+-.
T Consensus 102 GdDi-~~v~~~~~~~~~~vi~v~t~gf~ 128 (427)
T cd01971 102 GDDV-GAVVSEFQEGGAPIVYLETGGFK 128 (427)
T ss_pred hcCH-HHHHHHhhhcCCCEEEEECCCcC
Confidence 6633 44444446667777777776643
No 210
>PRK10481 hypothetical protein; Provisional
Probab=35.06 E-value=2.3e+02 Score=22.96 Aligned_cols=64 Identities=8% Similarity=0.050 Sum_probs=39.5
Q ss_pred HHHHHHhhhCCCcEEEEEeeC--CCHHHHHHHHHH---HhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEc
Q 028280 64 SFKDICNDFFNTNVEIIVTEG--DQEGARIAALVR---EIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 64 ~l~~~~~~~~~i~~~~~v~~G--~~~~~~I~~~a~---~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~ 135 (211)
..++|... |.++....... . ..+.+.+.++ +.++|.||++..+-+. . ....+-+..++||+..+
T Consensus 145 ~~~kw~~~--G~~v~~~~aspy~~-~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~-~----~~~~le~~lg~PVI~~n 213 (224)
T PRK10481 145 QAQKWQVL--QKPPVFALASPYHG-SEEELIDAGKELLDQGADVIVLDCLGYHQ-R----HRDLLQKALDVPVLLSN 213 (224)
T ss_pred HHHHHHhc--CCceeEeecCCCCC-CHHHHHHHHHHhhcCCCCEEEEeCCCcCH-H----HHHHHHHHHCcCEEcHH
Confidence 34444432 55555443221 2 3456666766 5689999999988764 1 24566777888988653
No 211
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=34.74 E-value=2.6e+02 Score=23.09 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=38.1
Q ss_pred CcEEEEEeeCCCHHHH--HHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCC
Q 028280 75 TNVEIIVTEGDQEGAR--IAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 75 i~~~~~v~~G~~~~~~--I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+.+-.-+...+ ..+. .++.|++.++|-+++.......... +-.--..|+..++.||++=..+
T Consensus 71 ~~vi~gv~~~~-~~~~i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P 136 (292)
T PRK03170 71 VPVIAGTGSNS-TAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVP 136 (292)
T ss_pred CcEEeecCCch-HHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 44443333333 4444 4478888999999997764332222 3344456777889999987644
No 212
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=34.68 E-value=64 Score=27.08 Aligned_cols=50 Identities=6% Similarity=0.020 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCc---ccccccHHHHHHccCCceEEEEcC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSF---LHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~---~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
-..++++.|++.+..+|+.-+.+.-. ...+......+.+++.+||.+-=.
T Consensus 30 ~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPValHLD 82 (284)
T PRK12737 30 TLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLALHLD 82 (284)
T ss_pred HHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECC
Confidence 78999999999999999988765432 222666777889999999887543
No 213
>PF13362 Toprim_3: Toprim domain
Probab=34.26 E-value=1.1e+02 Score=20.49 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=27.6
Q ss_pred CCeEEEEecCCHH--HHHHHHHHHHhhccCCCEEEEEEE
Q 028280 3 VKKIVVIVEDVDA--ARAALLWALQNLLRFGDVVTLLHV 39 (211)
Q Consensus 3 ~k~ILv~vD~s~~--s~~al~~A~~la~~~~a~l~llhV 39 (211)
.++|+++.|.... ...+...+...+...|..+.++--
T Consensus 41 ~~~vii~~D~D~~~~G~~~a~~~~~~~~~~g~~~~~~~p 79 (96)
T PF13362_consen 41 GRRVIIAADNDKANEGQKAAEKAAERLEAAGIAVSIVEP 79 (96)
T ss_pred CCeEEEEECCCCchhhHHHHHHHHHHHHhCCCeEEEECC
Confidence 5789999998877 788888777777776666555443
No 214
>PRK08185 hypothetical protein; Provisional
Probab=34.16 E-value=74 Score=26.72 Aligned_cols=50 Identities=4% Similarity=-0.136 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCccc-c-cccHHHHHHccCCceEEEEcC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLH-K-LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~-~-~gs~a~~vl~~a~~PVLvV~~ 136 (211)
-..++++.|++.+..+|+..+.+.-... . ++.....+.+++.+||.+-=.
T Consensus 25 ~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~lHLD 76 (283)
T PRK08185 25 FLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVIHLD 76 (283)
T ss_pred HHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEEECC
Confidence 7899999999999999999887653221 2 666777888999999877533
No 215
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=33.95 E-value=80 Score=25.99 Aligned_cols=122 Identities=11% Similarity=-0.100 Sum_probs=0.0
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhh----hCCCcEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICND----FFNTNVE 78 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~i~~~ 78 (211)
|+-.+.+=.++..+.-+...+..++.+.+.++.++-.-+...-...-..+..........+.+++.... .++--++
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk 80 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFK 80 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccc
Q ss_pred EEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc---cccHHHHHHccC
Q 028280 79 IIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK---LAMSHNDISSSF 127 (211)
Q Consensus 79 ~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~---~gs~a~~vl~~a 127 (211)
.....++ +.++.+-.... .+|+|||.-...+-.= .|....+++++.
T Consensus 81 ~~~~~~d-i~~e~~~e~~~--~~LLvmGkie~~GeGC~Cp~~allR~~l~~l 129 (255)
T COG3640 81 ENPLVSD-LPDEYLVENGD--IDLLVMGKIEEGGEGCACPMNALLRRLLRHL 129 (255)
T ss_pred cCcchhh-hhHHHhhhcCC--ccEEEeccccCCCCcccchHHHHHHHHHHHH
No 216
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=33.41 E-value=3.3e+02 Score=23.80 Aligned_cols=58 Identities=9% Similarity=0.111 Sum_probs=37.1
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCC---Ccccc-cccHH-HHHHccCCceEEEEcCC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDR---SFLHK-LAMSH-NDISSSFNCRVLAIKQP 137 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~---~~~~~-~gs~a-~~vl~~a~~PVLvV~~~ 137 (211)
|+++.. +.++ -...+ ..+..+|++++|+..- +.+.. .|+-. .-+.++.++||+|+-+.
T Consensus 227 GIpvtl--I~Ds-a~~~~---m~~~~Vd~VivGAD~I~~NG~v~NKiGTy~lA~~Ak~~~vPfyV~ap~ 289 (363)
T PRK05772 227 GIKVTL--ITDT-AVGLV---MYKDMVNNVMVGADRILRDGHVFNKIGTFKEAVIAHELGIPFYALAPT 289 (363)
T ss_pred CCCEEE--Eehh-HHHHH---HhhcCCCEEEECccEEecCCCEeehhhhHHHHHHHHHhCCCEEEEccc
Confidence 777654 3333 23322 3345799999999863 33444 88843 35668888999999653
No 217
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=33.25 E-value=1e+02 Score=22.42 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=33.5
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
-.+|+|+-|....|......++.-....|.++..+...+.
T Consensus 40 ~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~~t 79 (137)
T PF02878_consen 40 GSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLVPT 79 (137)
T ss_dssp SSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB-H
T ss_pred CCeEEEEEcccCCHHHHHHHHHHHHhhcccccccccccCc
Confidence 4689999999999999999999999999999999885543
No 218
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=33.18 E-value=1.7e+02 Score=20.29 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhhCCCcEEEEEe-----------eCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCC
Q 028280 60 QLALSFKDICNDFFNTNVEIIVT-----------EGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFN 128 (211)
Q Consensus 60 ~~~~~l~~~~~~~~~i~~~~~v~-----------~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~ 128 (211)
+.++++..++... |.++-..+. .|.--.++|.+.++..++|+||.... -++.. ...+-+..+
T Consensus 8 ~~l~El~~L~~t~-g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~-Lsp~Q-----~rNLe~~~~ 80 (95)
T PF13167_consen 8 ESLEELEELAETA-GYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNE-LSPSQ-----QRNLEKALG 80 (95)
T ss_pred HHHHHHHHHHHHC-CCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCC-CCHHH-----HHHHHHHHC
Confidence 3445566666653 444333221 13323789999999999999999853 22221 223444446
Q ss_pred ceEE
Q 028280 129 CRVL 132 (211)
Q Consensus 129 ~PVL 132 (211)
|+|+
T Consensus 81 ~~V~ 84 (95)
T PF13167_consen 81 VKVI 84 (95)
T ss_pred Ceee
Confidence 6663
No 219
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.54 E-value=1.3e+02 Score=22.17 Aligned_cols=50 Identities=10% Similarity=-0.096 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccC-CceEEEEc
Q 028280 86 QEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSF-NCRVLAIK 135 (211)
Q Consensus 86 ~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a-~~PVLvV~ 135 (211)
.+.+.+++.|+++++|+|.+.+.--+....+..+.+.+-.+- ..+++++-
T Consensus 39 v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivG 89 (134)
T TIGR01501 39 SPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVG 89 (134)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEec
Confidence 378999999999999999998865443333444554443322 12344454
No 220
>PRK11914 diacylglycerol kinase; Reviewed
Probab=32.46 E-value=2.5e+02 Score=23.36 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=29.8
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+.++.........-+.++++.+.+.++|+||+.. |-+.+.. +...+ ...+.|+-++|.+
T Consensus 39 g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~G-GDGTi~e---vv~~l-~~~~~~lgiiP~G 97 (306)
T PRK11914 39 GVDVVEIVGTDAHDARHLVAAALAKGTDALVVVG-GDGVISN---ALQVL-AGTDIPLGIIPAG 97 (306)
T ss_pred CCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEEC-CchHHHH---HhHHh-ccCCCcEEEEeCC
Confidence 5555443332221355666655566778766553 3333322 22233 2456777777753
No 221
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=32.39 E-value=4e+02 Score=24.43 Aligned_cols=106 Identities=14% Similarity=0.216 Sum_probs=61.7
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G 84 (211)
.+++..+.|..-...|.. |+..+-.+.++-|-..+... ++.. ++.+.+ .|+++.+..+.+
T Consensus 361 dviltyg~s~vV~~ill~----A~~~~k~frVvVVDSRP~~E-----------G~~~---lr~Lv~--~GinctYv~I~a 420 (556)
T KOG1467|consen 361 DVLLTYGSSSVVNMILLE----AKELGKKFRVVVVDSRPNLE-----------GRKL---LRRLVD--RGINCTYVLINA 420 (556)
T ss_pred CEEEEecchHHHHHHHHH----HHHhCcceEEEEEeCCCCcc-----------hHHH---HHHHHH--cCCCeEEEEehh
Confidence 356666666654444444 55555566666555443221 1111 333333 399998876655
Q ss_pred CCHHHHHHHHHHHhCCCEEEEecCCC---Ccccc-ccc-HHHHHHccCCceEEEEcCCC
Q 028280 85 DQEGARIAALVREIGASALVVGLHDR---SFLHK-LAM-SHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 85 ~~~~~~I~~~a~~~~adLIVmG~~~~---~~~~~-~gs-~a~~vl~~a~~PVLvV~~~~ 138 (211)
- ..|. ..++-|++|+|.- +.+.. .|. -..-+.++.++||||.-...
T Consensus 421 ~---syim-----~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~y 471 (556)
T KOG1467|consen 421 A---SYIM-----LEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEAY 471 (556)
T ss_pred H---HHHH-----HhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEechh
Confidence 4 4444 2468999999862 33333 776 22346777789999998643
No 222
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=32.32 E-value=54 Score=24.53 Aligned_cols=58 Identities=10% Similarity=-0.108 Sum_probs=38.5
Q ss_pred CcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 75 TNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 75 i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+.+--.++.|. +.+.=.+..++.++|.|++|.-.... .+-+-..+.+ .+..+-|+|-.
T Consensus 63 ~ryVD~vi~~~-p~~~~~~~i~~~k~Div~lG~D~~~d---~~~l~~~~~k-~G~~~~v~R~~ 120 (140)
T COG0615 63 LRYVDEVILGA-PWDIKFEDIEEYKPDIVVLGDDQKFD---EDDLKYELVK-RGLFVEVKRTE 120 (140)
T ss_pred CcchheeeeCC-ccccChHHHHHhCCCEEEECCCCcCC---hHHHHHHHHH-cCCeeEEEecc
Confidence 33444678888 77665788889999999999765521 2334444444 67777777643
No 223
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=32.32 E-value=3.3e+02 Score=23.97 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhCCCEEE
Q 028280 87 EGARIAALVREIGASALV 104 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIV 104 (211)
+.++|.+.++++++=+||
T Consensus 149 pl~~I~~~~k~~g~l~iV 166 (383)
T COG0075 149 PLKEIAKAAKEHGALLIV 166 (383)
T ss_pred cHHHHHHHHHHcCCEEEE
Confidence 678888888877544444
No 224
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=32.21 E-value=2.6e+02 Score=22.19 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhCCCEEEE
Q 028280 88 GARIAALVREIGASALVV 105 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVm 105 (211)
...+.+.....++|-||+
T Consensus 53 ~~~~~~~l~~~~~dgiii 70 (275)
T cd06295 53 RDWLARYLASGRADGVIL 70 (275)
T ss_pred HHHHHHHHHhCCCCEEEE
Confidence 344444444556665554
No 225
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=32.19 E-value=1.4e+02 Score=22.26 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCC-Ccccc-----cccHHHHHHccCCceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDR-SFLHK-----LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~-~~~~~-----~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
....|.+.+++++++.||+|-... ++-.. .-..++.+-.+.++||.++-+.
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~~~f~~~L~~r~~lpv~l~DER 97 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELARKFAERLKKRFNLPVVLWDER 97 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 578999999999999999998652 11111 2225667777788999998653
No 226
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=32.15 E-value=3e+02 Score=22.92 Aligned_cols=59 Identities=19% Similarity=0.108 Sum_probs=36.5
Q ss_pred CcEEEEEeeCCCHHHH--HHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEc
Q 028280 75 TNVEIIVTEGDQEGAR--IAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 75 i~~~~~v~~G~~~~~~--I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~ 135 (211)
+.+-.-+ |.+..++ ..+.|++.++|-+++-..--..... +-.--..|+..+++||++-.
T Consensus 75 ~pvi~gv--~~~t~~ai~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 75 VPVYTGV--GGNTSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred CcEEEec--CccHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 4444444 3335554 5588888999999886653322211 33344567777889999986
No 227
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=32.09 E-value=90 Score=25.73 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=30.6
Q ss_pred HHHHHHhCCCEEEEecCCCC-cccc-cccHHHHHHccCCceEEEEcCCCC
Q 028280 92 AALVREIGASALVVGLHDRS-FLHK-LAMSHNDISSSFNCRVLAIKQPAA 139 (211)
Q Consensus 92 ~~~a~~~~adLIVmG~~~~~-~~~~-~gs~a~~vl~~a~~PVLvV~~~~~ 139 (211)
....+++++|.||.=-.|.. ++.. + ...++.++||+||+.+..
T Consensus 190 ~al~~~~~i~~lVtK~SG~~Gg~~eKi-----~AA~~lgi~vivI~RP~~ 234 (256)
T TIGR00715 190 KALLREYRIDAVVTKASGEQGGELEKV-----KAAEALGINVIRIARPQT 234 (256)
T ss_pred HHHHHHcCCCEEEEcCCCCccchHHHH-----HHHHHcCCcEEEEeCCCC
Confidence 36667899999998666554 3221 2 457788999999998754
No 228
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=31.69 E-value=2.6e+02 Score=24.67 Aligned_cols=42 Identities=12% Similarity=-0.050 Sum_probs=31.4
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
|.+++|++.+.-.++.-....-...+-+..+-+..++|....
T Consensus 1 m~~~Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH 42 (383)
T COG0381 1 MKMLKVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQH 42 (383)
T ss_pred CCceEEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEeccc
Confidence 788999999988888766666556666655677888887654
No 229
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=31.63 E-value=1.6e+02 Score=25.60 Aligned_cols=38 Identities=24% Similarity=0.039 Sum_probs=27.7
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
|+.++|+|+..+.-+|-- ++.+.++.|-+|.-+|..--
T Consensus 1 ~~~~kV~v~mSGGVDSSV----aA~lLk~QGyeViGl~m~~~ 38 (356)
T COG0482 1 MKKKKVLVGMSGGVDSSV----AAYLLKEQGYEVIGLFMKNW 38 (356)
T ss_pred CCCcEEEEEccCCHHHHH----HHHHHHHcCCeEEEEEEEee
Confidence 788999999887655543 44566667888888887643
No 230
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=31.34 E-value=51 Score=24.52 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 84 GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 84 G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
|+ .....++....+ +|+||+=....+.+ +.+..++.|||+
T Consensus 81 ~E-sl~Dtar~ls~~-~D~iv~R~~~~~~~-------~~~a~~~~vPVI 120 (142)
T PF02729_consen 81 GE-SLEDTARVLSRY-VDAIVIRHPSHGAL-------EELAEHSSVPVI 120 (142)
T ss_dssp SS-EHHHHHHHHHHH-CSEEEEEESSHHHH-------HHHHHHCSSEEE
T ss_pred CC-CHHHHHHHHHHh-hheEEEEeccchHH-------HHHHHhccCCeE
Confidence 55 333344455556 89999876555444 478889999985
No 231
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=31.05 E-value=3.1e+02 Score=22.84 Aligned_cols=33 Identities=21% Similarity=0.087 Sum_probs=24.8
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEe
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVG 106 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG 106 (211)
++.+.+++..+.+-..++++.+.+.++|.|++.
T Consensus 168 ~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 168 KIPVIAKLTPNITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred CCCeEEECCCCchhHHHHHHHHHHcCCCEEEEe
Confidence 567777776655346688888889999999953
No 232
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=30.61 E-value=94 Score=23.74 Aligned_cols=46 Identities=15% Similarity=0.026 Sum_probs=29.0
Q ss_pred HHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 90 RIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 90 ~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
..++.+-+.++||+|+...++-.... |-..... .-...+|||+.=+
T Consensus 84 ~~l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~-A~~~giPVLt~V~ 131 (159)
T PF10649_consen 84 AALRRALAEGADLLIVNKFGKQEAEGRGLRDEIAA-ALAAGIPVLTAVP 131 (159)
T ss_pred HHHHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHH-HHHCCCCEEEEEC
Confidence 34455556789999999988765443 3332222 2347899998644
No 233
>PRK12569 hypothetical protein; Provisional
Probab=30.43 E-value=2.6e+02 Score=23.00 Aligned_cols=105 Identities=5% Similarity=-0.002 Sum_probs=62.1
Q ss_pred HHHHHHHHhhccCCCEEEEEEEecCCCcc----chHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE----------ee
Q 028280 18 AALLWALQNLLRFGDVVTLLHVFPSLNSR----NRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV----------TE 83 (211)
Q Consensus 18 ~al~~A~~la~~~~a~l~llhV~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v----------~~ 83 (211)
.....++++|+..|-.|-.==-+|..... -....+++..........|+.+|... |.++...- .+
T Consensus 47 ~~M~~tv~lA~~~~V~IGAHPsyPD~~gFGRr~m~~s~~el~~~v~yQigaL~~~~~~~-g~~l~hVKPHGALYN~~~~d 125 (245)
T PRK12569 47 NIMRRTVELAKAHGVGIGAHPGFRDLVGFGRRHINASPQELVNDVLYQLGALREFARAH-GVRLQHVKPHGALYMHAARD 125 (245)
T ss_pred HHHHHHHHHHHHcCCEeccCCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCeeEEecCCHHHHHHHhcC
Confidence 34566777777776654332222221111 01123444444555556677787753 66665542 22
Q ss_pred CCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 84 GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 84 G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
.. .++.|++.+++.+.+|++++..+ |...+..+....+++
T Consensus 126 ~~-la~av~~ai~~~~~~l~l~~~~~--------s~~~~~A~~~Gl~~~ 165 (245)
T PRK12569 126 EA-LARLLVEALARLDPLLILYCMDG--------SATERAARELGQPVV 165 (245)
T ss_pred HH-HHHHHHHHHHHhCCCcEEEecCC--------cHHHHHHHHcCCCeE
Confidence 33 68999999999999999999643 333467777777775
No 234
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=30.34 E-value=2.7e+02 Score=22.46 Aligned_cols=89 Identities=19% Similarity=0.276 Sum_probs=51.2
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCC-cc-c-hHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLN-SR-N-RKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~-~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v 81 (211)
++++...+.++|-.|+.+|.+. . .-+.|+++.+... .. . ....+. ++..++.. |++....-
T Consensus 2 k~~~l~SGGKDS~~al~~a~~~-~---~v~~L~t~~~~~~~s~~~H~~~~~~-----------~~~qA~al-gipl~~~~ 65 (223)
T TIGR00290 2 KVAALISGGKDSCLALYHALKE-H---EVISLVNIMPENEESYMFHGVNAHL-----------TDLQAESI-GIPLIKLY 65 (223)
T ss_pred cEEEEecCcHHHHHHHHHHHHh-C---eeEEEEEEecCCCCcccccccCHHH-----------HHHHHHHc-CCCeEEee
Confidence 3668889999999999998877 2 4566777776532 11 0 000111 11111112 55543211
Q ss_pred eeCC--CHHHHHHHHHHHhCCCEEEEecCC
Q 028280 82 TEGD--QEGARIAALVREIGASALVVGLHD 109 (211)
Q Consensus 82 ~~G~--~~~~~I~~~a~~~~adLIVmG~~~ 109 (211)
..|. +-.+.+.+..++.+++.||-|.--
T Consensus 66 ~~~~~e~~~e~l~~~l~~~gv~~vv~GdI~ 95 (223)
T TIGR00290 66 TEGTEEDEVEELKGILHTLDVEAVVFGAIY 95 (223)
T ss_pred cCCCccHHHHHHHHHHHHcCCCEEEECCcc
Confidence 2221 245666677777799999999854
No 235
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=30.18 E-value=1.3e+02 Score=26.31 Aligned_cols=79 Identities=10% Similarity=0.069 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhccCCC-EEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGD-VVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIA 92 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a-~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~ 92 (211)
..+++.+.+|.++|++.+. +|+++|=..... ....-..+.+.+..+++|+++++...++ . ..-.++
T Consensus 184 ~~~eRIar~AF~~A~~r~~k~Vt~v~KaNvlk-----------~tdglf~e~~~eva~eyPdI~~~~~~VD-a-~a~~Lv 250 (372)
T PLN00118 184 QASLRVAEYAFHYAKTHGRKRVSAIHKANIMK-----------KTDGLFLKCCREVAEKYPEIVYEEVIID-N-CCMMLV 250 (372)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEECCccch-----------hhhHHHHHHHHHHHhhCCCceEEeeeHH-H-HHHHhc
Confidence 4578899999999988764 577776432211 0011112234445556788887776442 2 344443
Q ss_pred HHHHHhCCCEEEEec
Q 028280 93 ALVREIGASALVVGL 107 (211)
Q Consensus 93 ~~a~~~~adLIVmG~ 107 (211)
.- -.+.|.||+..
T Consensus 251 ~~--P~~fDViVt~N 263 (372)
T PLN00118 251 KN--PALFDVLVMPN 263 (372)
T ss_pred cC--cccCcEEEEcC
Confidence 32 24578666654
No 236
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=30.00 E-value=3.9e+02 Score=23.77 Aligned_cols=36 Identities=3% Similarity=0.234 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEE
Q 028280 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV 134 (211)
..++.+.+++.++|||+=+++++ ++.++.++|.+-+
T Consensus 376 ~~e~~~~i~~~~pdllig~s~~~-----------~~A~~lgip~~~~ 411 (443)
T TIGR01862 376 ELEFEEILEKLKPDIIFSGIKEK-----------FVAQKLGVPYRQM 411 (443)
T ss_pred HHHHHHHHHhcCCCEEEEcCcch-----------hhhhhcCCCeEec
Confidence 46677778888999888655543 3456677787654
No 237
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=29.99 E-value=4.2e+02 Score=23.95 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=28.9
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccc
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLA 117 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~g 117 (211)
+.+.+++. +.+....+..++ ...+.+.+++.++||+|-|-.-...+.+.|
T Consensus 360 l~~~~~~~-~~~~~vive~~D--~~el~~~i~~~~pDLlIgG~~~~~Pl~~~G 409 (457)
T CHL00073 360 LEDTCRKM-NVPMPRIVEKPD--NYNQIQRIRELQPDLAITGMAHANPLEARG 409 (457)
T ss_pred HHHHhhhc-CCCCcEEEeCCC--HHHHHHHHhhCCCCEEEccccccCchhhcC
Confidence 44555432 333333334444 556668888999999998863334444433
No 238
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=29.97 E-value=1.2e+02 Score=24.83 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=31.9
Q ss_pred HHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCCCCC
Q 028280 92 AALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAAS 140 (211)
Q Consensus 92 ~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~~~~ 140 (211)
....+++++|.||.=-.|..++.. =-...+..++||++|+.+...
T Consensus 187 ~al~~~~~i~~lVtK~SG~~g~~e----Ki~AA~~lgi~vivI~RP~~~ 231 (249)
T PF02571_consen 187 RALFRQYGIDVLVTKESGGSGFDE----KIEAARELGIPVIVIKRPPEP 231 (249)
T ss_pred HHHHHHcCCCEEEEcCCCchhhHH----HHHHHHHcCCeEEEEeCCCCC
Confidence 356678999999987666553321 014578889999999987654
No 239
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=29.97 E-value=3.3e+02 Score=22.72 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=34.9
Q ss_pred HHHH--HHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccC-CceEEEEcCC
Q 028280 87 EGAR--IAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSF-NCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~--I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a-~~PVLvV~~~ 137 (211)
..++ +.+.|++.++|.+++...-...... +-.--..|+..+ +.||++=.-+
T Consensus 81 t~~ai~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P 136 (294)
T TIGR02313 81 HDETLELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIP 136 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 5555 5588889999999999865433222 444445677788 7999987644
No 240
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=29.91 E-value=1.1e+02 Score=25.31 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+......+++++|++|+.+.....-. ..-+..++....+|.+||...
T Consensus 49 ~~~~~~~~~~~pdf~I~isPN~~~PG--P~~ARE~l~~~~iP~IvI~D~ 95 (276)
T PF01993_consen 49 EVVTKMLKEWDPDFVIVISPNAAAPG--PTKAREMLSAKGIPCIVISDA 95 (276)
T ss_dssp HHHHHHHHHH--SEEEEE-S-TTSHH--HHHHHHHHHHSSS-EEEEEEG
T ss_pred HHHHHHHHhhCCCEEEEECCCCCCCC--cHHHHHHHHhCCCCEEEEcCC
Confidence 34445567999999999886544321 125678999999999999753
No 241
>PRK05406 LamB/YcsF family protein; Provisional
Probab=29.79 E-value=3.2e+02 Score=22.51 Aligned_cols=105 Identities=12% Similarity=-0.007 Sum_probs=63.3
Q ss_pred HHHHHHHHhhccCCCEEEEEEEecCCCcc-----chHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee---------
Q 028280 18 AALLWALQNLLRFGDVVTLLHVFPSLNSR-----NRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE--------- 83 (211)
Q Consensus 18 ~al~~A~~la~~~~a~l~llhV~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~--------- 83 (211)
.....++.+|+..|-.|-. |...+.... .....+++..........++.+|+.. |.++...--.
T Consensus 44 ~~M~~tv~lA~~~gV~IGA-HPgypD~~gFGRR~m~~s~~el~~~v~yQigAL~~~a~~~-g~~l~hVKPHGALYN~~~~ 121 (246)
T PRK05406 44 AVMRRTVRLAKENGVAIGA-HPGYPDLEGFGRRNMDLSPEELYALVLYQIGALQAIARAA-GGRVSHVKPHGALYNMAAK 121 (246)
T ss_pred HHHHHHHHHHHHcCCeEcc-CCCCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCeeEEeCccHHHHHHHhc
Confidence 4456677777777655432 222221111 01123444444555556678888753 6666654222
Q ss_pred CCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 84 GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 84 G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
....++.|++.++..+.+|++++..+ |...+..+....+++
T Consensus 122 d~~~a~av~~ai~~~~~~l~l~~~~~--------s~~~~~A~~~Gl~~~ 162 (246)
T PRK05406 122 DPALADAVAEAVAAVDPSLILVGLAG--------SELIRAAEEAGLRTA 162 (246)
T ss_pred CHHHHHHHHHHHHHhCCCcEEEecCC--------hHHHHHHHHcCCcEE
Confidence 22378899999999999999999654 333477888888876
No 242
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=29.74 E-value=3.9e+02 Score=23.52 Aligned_cols=109 Identities=9% Similarity=-0.052 Sum_probs=57.2
Q ss_pred EEEecCCHHHHHHHHHHHHhhcc---CCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 7 VVIVEDVDAARAALLWALQNLLR---FGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 7 Lv~vD~s~~s~~al~~A~~la~~---~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
+|+..|+..+..+...|..+... .+.++.+++.-+... ...++++.+++.. |+++..
T Consensus 179 lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~---------------aa~eQL~~~a~~l-gvpv~~---- 238 (388)
T PRK12723 179 LVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI---------------GAKKQIQTYGDIM-GIPVKA---- 238 (388)
T ss_pred EECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH---------------HHHHHHHHHhhcC-CcceEe----
Confidence 44455666666776677666542 466777777754211 0112244555432 555432
Q ss_pred CCCHHHHHHHH-HHHhCCCEEEEecCCCCcccc--cccHHHHHHccCC---ceEEEEcCC
Q 028280 84 GDQEGARIAAL-VREIGASALVVGLHDRSFLHK--LAMSHNDISSSFN---CRVLAIKQP 137 (211)
Q Consensus 84 G~~~~~~I~~~-a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~---~PVLvV~~~ 137 (211)
.. ..+.+... .+..++|+|++.+-|++.... +... ..++.... -.+||+...
T Consensus 239 ~~-~~~~l~~~L~~~~~~DlVLIDTaGr~~~~~~~l~el-~~~l~~~~~~~e~~LVlsat 296 (388)
T PRK12723 239 IE-SFKDLKEEITQSKDFDLVLVDTIGKSPKDFMKLAEM-KELLNACGRDAEFHLAVSST 296 (388)
T ss_pred eC-cHHHHHHHHHHhCCCCEEEEcCCCCCccCHHHHHHH-HHHHHhcCCCCeEEEEEcCC
Confidence 22 22333332 233579999999999876332 2222 23444443 245777653
No 243
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=29.05 E-value=95 Score=27.02 Aligned_cols=57 Identities=5% Similarity=0.134 Sum_probs=37.1
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCC---Ccccc-cccHH-HHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDR---SFLHK-LAMSH-NDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~---~~~~~-~gs~a-~~vl~~a~~PVLvV~~ 136 (211)
|+++.. +.++ -.. .+..+..+|++|+|+..- +.... .|+-. .-+.++.++||+|+-+
T Consensus 219 GI~vtl--I~Ds-av~---~~M~~~~Vd~VivGAd~I~~nG~v~NKiGTy~lA~~Ak~~~vPfyV~Ap 280 (356)
T PRK08334 219 GIPLKL--ISDN-MAG---FVMQQGKVDAIIVGADRIVANGDFANKIGTYTLAVLAKEHGIPFFTVAP 280 (356)
T ss_pred CCCEEE--Eehh-HHH---HHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHhCCCEEEEcc
Confidence 776654 3333 222 344456799999999873 33444 88833 3566888999999864
No 244
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=29.00 E-value=2.6e+02 Score=24.15 Aligned_cols=57 Identities=11% Similarity=0.145 Sum_probs=37.0
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCC--Ccccc-cccHH-HHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDR--SFLHK-LAMSH-NDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~--~~~~~-~gs~a-~~vl~~a~~PVLvV~~ 136 (211)
|+++... .++ .+-...++..+|++++|+..- +++-. .|+-. .-+.++.++|++|+-+
T Consensus 207 GI~vtlI--~Ds----a~~~~M~~~~Vd~VivGAd~I~anGv~NKiGT~~lA~~Ak~~~vPfyV~ap 267 (339)
T PRK06036 207 NIPVTLI--TDS----MAGIVMRQGMVDKVIVGADRITRDAVFNKIGTYTHSVLAKEHEIPFYVAAP 267 (339)
T ss_pred CCCEEEE--ehh----HHHHHhccCCCCEEEECccchhhcCeehhhhHHHHHHHHHHhCCCEEEEee
Confidence 7776643 222 223344455699999999872 34444 88843 3556788899999864
No 245
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=28.90 E-value=3.7e+02 Score=22.92 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCEEE-EecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 90 RIAALVREIGASALV-VGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 90 ~I~~~a~~~~adLIV-mG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+.+.+++ ++|.|| +|... ...++..+....++|++.|+-
T Consensus 72 ~~~~~~~~-~~d~IIaIGGGs------~~D~aK~vA~~~~~p~i~IPT 112 (348)
T cd08175 72 RVLKELER-DTDLIIAVGSGT------INDITKYVSYKTGIPYISVPT 112 (348)
T ss_pred HHHHHhhc-cCCEEEEECCcH------HHHHHHHHHHhcCCCEEEecC
Confidence 44445555 788877 55311 122344444455788888874
No 246
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=28.63 E-value=3.4e+02 Score=22.54 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=32.6
Q ss_pred HHHH--HHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccC-CceEEEEcCC
Q 028280 87 EGAR--IAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSF-NCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~--I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a-~~PVLvV~~~ 137 (211)
..++ ..+.|++.++|.|++.......... +-.--..|+..+ +.||++-..+
T Consensus 82 t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P 137 (290)
T TIGR00683 82 LKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIP 137 (290)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCc
Confidence 4444 4488889999999997754322211 333334566666 6999987654
No 247
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=28.52 E-value=77 Score=26.31 Aligned_cols=41 Identities=12% Similarity=0.051 Sum_probs=33.3
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
|+-+.+++++.+|......++ +++.|+..|++++.+.-...
T Consensus 175 ~~~~Dv~i~iS~sG~t~e~i~-~a~~ak~~ga~vIaiT~~~~ 215 (281)
T COG1737 175 LTPGDVVIAISFSGYTREIVE-AAELAKERGAKVIAITDSAD 215 (281)
T ss_pred CCCCCEEEEEeCCCCcHHHHH-HHHHHHHCCCcEEEEcCCCC
Confidence 345679999999999988888 67888889999888776643
No 248
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=28.51 E-value=89 Score=26.25 Aligned_cols=55 Identities=5% Similarity=0.020 Sum_probs=41.1
Q ss_pred EeeCCCHHHHHHHHHHHhCCCEEEEecCCCC---cccccccHHHHHHccCCceEEEEcC
Q 028280 81 VTEGDQEGARIAALVREIGASALVVGLHDRS---FLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~---~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+..-+ -..++++.|++.+.-+|+.-+.+.- +...+......+.+++.+||.+-=.
T Consensus 25 ~~n~e-~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLD 82 (284)
T PRK09195 25 IHNLE-TMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLD 82 (284)
T ss_pred eCCHH-HHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECC
Confidence 34444 7899999999999999998877542 2212666777889999999887543
No 249
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=28.50 E-value=3.8e+02 Score=23.73 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEeeCCCHHHHHHHHHHHhCCCEEEEec
Q 028280 80 IVTEGDQEGARIAALVREIGASALVVGL 107 (211)
Q Consensus 80 ~v~~G~~~~~~I~~~a~~~~adLIVmG~ 107 (211)
.+.++. -...+.+.+++.++||+|=|+
T Consensus 342 ~v~~~~-D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 342 RIVEGQ-DVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred EEEECC-CHHHHHHHHHHcCCCEEEccC
Confidence 456665 367777888999999999876
No 250
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=28.34 E-value=3.8e+02 Score=22.96 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhccCCCEEEEEEEecCCCcc
Q 028280 16 ARAALLWALQNLLRFGDVVTLLHVFPSLNSR 46 (211)
Q Consensus 16 s~~al~~A~~la~~~~a~l~llhV~~~~~~~ 46 (211)
-+.-.+||..-.+.+|+.+.-+|.+...+..
T Consensus 149 medP~eWArk~Vk~fgadmvTiHlIsTdPki 179 (403)
T COG2069 149 MEDPGEWARKCVKKFGADMVTIHLISTDPKI 179 (403)
T ss_pred hhCHHHHHHHHHHHhCCceEEEEeecCCccc
Confidence 3456789999999999998888888765543
No 251
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=28.10 E-value=1.3e+02 Score=20.59 Aligned_cols=47 Identities=4% Similarity=-0.040 Sum_probs=27.2
Q ss_pred HHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCC
Q 028280 63 LSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRS 111 (211)
Q Consensus 63 ~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~ 111 (211)
+.+++.+++. |+++.++..... -....+....-..+|+||+-.....
T Consensus 19 ~~L~~aa~~~-g~~~~ve~~~~~-g~~~~l~~~~i~~Ad~vi~~~~~~~ 65 (96)
T cd05569 19 EALEKAAKKL-GWEIKVETQGSL-GIENELTAEDIAEADAVILAADVPV 65 (96)
T ss_pred HHHHHHHHHC-CCeEEEEEecCc-CccCcCCHHHHhhCCEEEEecCCCC
Confidence 4566666654 777776654443 2222222234457899999887653
No 252
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=28.03 E-value=1.4e+02 Score=25.84 Aligned_cols=77 Identities=10% Similarity=0.075 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
..+++.+.+|.++|.+.+.+|+++|=... .... . -..+.+++..+++|+++++...++- ....++.
T Consensus 163 ~~~eRI~r~AF~~A~~r~~~Vt~v~KaNv---lkt~--g-------lf~~~~~eva~~yP~I~~~~~~vDa--~~~~Lv~ 228 (349)
T TIGR00169 163 PEIERIARVAFEMARKRRKKVTSVDKANV---LESS--R-------LWRKTVEEIAKEYPDVELEHQYIDN--AAMQLVK 228 (349)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECCcc---cchh--H-------HHHHHHHHHHhhCCCceEEeeeHHH--HHHHHHh
Confidence 35788888999999887667776664332 2111 1 1122344445567888877764422 3333333
Q ss_pred HHHHhCCCEEEEe
Q 028280 94 LVREIGASALVVG 106 (211)
Q Consensus 94 ~a~~~~adLIVmG 106 (211)
-- ...|.||+.
T Consensus 229 ~P--~~fDViv~~ 239 (349)
T TIGR00169 229 SP--TQFDVVVTG 239 (349)
T ss_pred Cc--cCceEEEEc
Confidence 22 457866654
No 253
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=27.95 E-value=34 Score=26.47 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=28.6
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHV 39 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV 39 (211)
+.+-||+.|..+.+....+|..++.. .|..+.++.-
T Consensus 35 lDNTLv~wd~~~~tpe~~~W~~e~k~-~gi~v~vvSN 70 (175)
T COG2179 35 LDNTLVPWDNPDATPELRAWLAELKE-AGIKVVVVSN 70 (175)
T ss_pred ccCceecccCCCCCHHHHHHHHHHHh-cCCEEEEEeC
Confidence 56678999999999999999887765 5677766654
No 254
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=27.95 E-value=3.9e+02 Score=23.47 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=21.6
Q ss_pred EEEeeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 79 IIVTEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 79 ~~v~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
..+..+. -...+.+.+++.++||+|=|+.
T Consensus 324 ~~v~~~~-d~~~l~~~i~~~~pDllig~~~ 352 (407)
T TIGR01279 324 VRIVEQP-DFHRQLQRIRATRPDLVVTGLG 352 (407)
T ss_pred CeEEeCC-CHHHHHHHHHhcCCCEEecCcc
Confidence 4556666 4566778888899999998873
No 255
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=27.88 E-value=3.5e+02 Score=22.37 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=33.7
Q ss_pred HHHH--HHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccC-CceEEEEcCC
Q 028280 87 EGAR--IAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSF-NCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~--I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a-~~PVLvV~~~ 137 (211)
..++ ..+.|++.++|-+++...-...... +-.--..|+..+ ++||++-..+
T Consensus 82 ~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P 137 (288)
T cd00954 82 LKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIP 137 (288)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 5444 4477889999999987754332222 333445677788 7999997654
No 256
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=27.87 E-value=1.7e+02 Score=19.40 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC-cc-cc-c-ccHHHHHHccCCceEEEEcC
Q 028280 87 EGARIAALVREIGASALVVGLHDRS-FL-HK-L-AMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~-~~-~~-~-gs~a~~vl~~a~~PVLvV~~ 136 (211)
..+.|.+.+++++++.|++|..+.- +. .. + -.+.+.+-++.++||.++..
T Consensus 39 ~~~~l~~~i~~~~~~~i~Ig~pg~v~g~~~~~~~~~l~~~l~~~~~~pv~~~nD 92 (99)
T smart00732 39 DAARLKKLIKKYQPDLIVIGLPLNMNGTASRETEEAFAELLKERFNLPVVLVDE 92 (99)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHhhCCcEEEEeC
Confidence 5677778888888999999976642 11 10 1 22334445567899999875
No 257
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=27.64 E-value=2e+02 Score=24.83 Aligned_cols=20 Identities=40% Similarity=0.358 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhCCCEEE-Eec
Q 028280 88 GARIAALVREIGASALV-VGL 107 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIV-mG~ 107 (211)
.+.+++.+++.++|.|| +|.
T Consensus 72 v~~~~~~~~~~~~d~IIaiGG 92 (374)
T cd08189 72 VEAGLALYRENGCDAILAVGG 92 (374)
T ss_pred HHHHHHHHHhcCCCEEEEeCC
Confidence 45677778888999887 554
No 258
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.49 E-value=2.1e+02 Score=19.57 Aligned_cols=39 Identities=10% Similarity=0.050 Sum_probs=28.1
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEE
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHV 39 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV 39 (211)
|+.++||++....-.+-..+....+.++..|-.+.+-++
T Consensus 1 ~~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~ 39 (95)
T TIGR00853 1 MNETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAG 39 (95)
T ss_pred CCccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 567889888876665556778888888887777555444
No 259
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=27.42 E-value=1.9e+02 Score=25.21 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCCCEEE-Eec
Q 028280 88 GARIAALVREIGASALV-VGL 107 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIV-mG~ 107 (211)
.+.+++.+++.++|.|| +|.
T Consensus 77 v~~~~~~~~~~~~D~IiaiGG 97 (383)
T PRK09860 77 VAAGLKLLKENNCDSVISLGG 97 (383)
T ss_pred HHHHHHHHHHcCCCEEEEeCC
Confidence 56777888889999988 664
No 260
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=27.36 E-value=72 Score=24.01 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHcc-------CCceEEEEcC
Q 028280 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSS-------FNCRVLAIKQ 136 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~-------a~~PVLvV~~ 136 (211)
.+.+.++.+++++|+|++|..+.... ++-.....++.. .++||.+|..
T Consensus 52 ~~~l~~~i~~~kP~vI~v~g~~~~s~-~l~~~v~~~v~~~~~~~~~~~i~V~~v~~ 106 (150)
T PF14639_consen 52 MERLKKFIEKHKPDVIAVGGNSRESR-KLYDDVRDIVEELDEDEQMPPIPVVIVDD 106 (150)
T ss_dssp HHHHHHHHHHH--SEEEE--SSTHHH-HHHHHHHHHHHHTTB-TTS-B--EEE---
T ss_pred HHHHHHHHHHcCCeEEEEcCCChhHH-HHHHHHHHHHHHhhhcccCCCceEEEECc
Confidence 46677788888999999965433211 122222233333 2588888764
No 261
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=27.30 E-value=4.3e+02 Score=23.21 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=26.7
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
.++|+++.|.-+|--|+-...+ .|.++..+|+...
T Consensus 181 gkvlvllSGGiDSpVAa~ll~k----rG~~V~~v~f~~g 215 (381)
T PRK08384 181 GKVVALLSGGIDSPVAAFLMMK----RGVEVIPVHIYMG 215 (381)
T ss_pred CcEEEEEeCChHHHHHHHHHHH----cCCeEEEEEEEeC
Confidence 5899999988888766554443 5999999999643
No 262
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=27.27 E-value=90 Score=26.23 Aligned_cols=50 Identities=8% Similarity=-0.004 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcc---cccccHHHHHHccCCceEEEEcC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFL---HKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~---~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
...++++.|++.+..+|+..+.+.-.. ..+......+.+++.+||.+-=.
T Consensus 30 ~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lHLD 82 (283)
T PRK07998 30 TTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLHLD 82 (283)
T ss_pred HHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEECc
Confidence 678999999999999999987654221 11566777888999999987543
No 263
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=27.07 E-value=1.1e+02 Score=26.32 Aligned_cols=57 Identities=7% Similarity=0.098 Sum_probs=36.6
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCC---Ccccc-ccc-HHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDR---SFLHK-LAM-SHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~---~~~~~-~gs-~a~~vl~~a~~PVLvV~~ 136 (211)
|+++.. +..+ -.. .+....++|++++|+..- +.+-. .|+ ...-+.++.++||+|+-+
T Consensus 196 GI~vtl--I~Ds-a~~---~~M~~~~Vd~VivGAd~I~aNG~v~NKiGT~~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 196 GIDHAI--IADN-AAG---YFMRKKEIDLVIVGADRIASNGDFANKIGTYEKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred CCCEEE--Eccc-HHH---HHhhhcCCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEecc
Confidence 666554 3333 233 233445799999999873 33444 888 333566888999999865
No 264
>PRK10799 metal-binding protein; Provisional
Probab=27.07 E-value=77 Score=25.83 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=21.6
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHV 39 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV 39 (211)
+++|++++|.+.+ .++.|...++.+.+.|=
T Consensus 35 v~~I~~alD~t~~-------vi~~A~~~~~dlIitHH 64 (247)
T PRK10799 35 VQKIVTGVTASQA-------LLDEAVRLQADAVIVHH 64 (247)
T ss_pred ccEEEEEeCCCHH-------HHHHHHHCCCCEEEECC
Confidence 6899999999984 34444455777777664
No 265
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=27.02 E-value=1.1e+02 Score=28.06 Aligned_cols=49 Identities=14% Similarity=0.010 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEc
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~ 135 (211)
..+.|.+..+.+++++|++.+.--+.+-. +++++..+-....+||+.+.
T Consensus 73 L~~~I~~~~~~~~P~~I~V~tTC~~eiIGDDi~~v~~~~~~~~~~pVi~v~ 123 (513)
T CHL00076 73 VVDNITRKDKEERPDLIVLTPTCTSSILQEDLQNFVDRASIESDSDVILAD 123 (513)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCchhhhhcCHHHHHHHhhcccCCCEEEeC
Confidence 34445555555566666665554443322 44444443333455555554
No 266
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=27.00 E-value=4.4e+02 Score=23.25 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=21.0
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEE
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHV 39 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV 39 (211)
|.+.++.++.|+....+. ++.+..+.. .| +..+|+
T Consensus 1 ~~~~~l~~alD~~~~~~~-~~~~~~~~~-~G--v~~ie~ 35 (430)
T PRK07028 1 MERPILQVALDLLELDRA-VEIAKEAVA-GG--ADWIEA 35 (430)
T ss_pred CCCceEEEEeccCCHHHH-HHHHHHHHh-cC--CcEEEe
Confidence 788999999998765433 333333332 33 455565
No 267
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=26.96 E-value=3.3e+02 Score=24.04 Aligned_cols=34 Identities=29% Similarity=0.418 Sum_probs=28.1
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEE
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLL 37 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll 37 (211)
++|+++.|++.....|...++..+...|-.+.++
T Consensus 301 ~~vvl~~D~D~aG~~aa~r~~~~l~~~g~~v~v~ 334 (415)
T TIGR01391 301 DEIILCFDGDKAGRKAALRAIELLLPLGINVKVI 334 (415)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 5899999999999999999888888777555544
No 268
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=26.91 E-value=1.2e+02 Score=25.46 Aligned_cols=51 Identities=8% Similarity=-0.096 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcc---cccccHHHHHHccCCceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFL---HKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~---~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
-..++++.|++.+..+|+.-+.+.-.. ..++.....+..++.+||.+-=.+
T Consensus 25 ~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~lHLDH 78 (276)
T cd00947 25 TLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVALHLDH 78 (276)
T ss_pred HHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 789999999999999999887664322 126667778888999999886443
No 269
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=26.85 E-value=1.1e+02 Score=25.45 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=37.4
Q ss_pred CCCcEEEEEeeCCCHHHH-HHHHHHHhCCCEEEEecCCCCccccc------------ccHHHHHHccCCceEEEEcCC
Q 028280 73 FNTNVEIIVTEGDQEGAR-IAALVREIGASALVVGLHDRSFLHKL------------AMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 73 ~~i~~~~~v~~G~~~~~~-I~~~a~~~~adLIVmG~~~~~~~~~~------------gs~a~~vl~~a~~PVLvV~~~ 137 (211)
.| +.+-.++.|.+++.+ -++.|-+...+.+|+-+.=.++++-+ .++.++ +++.+||||++...
T Consensus 126 ~g-~~~~Iil~G~SiGt~~tv~Lasr~~~~alVL~SPf~S~~rv~~~~~~~~~~~d~f~~i~k-I~~i~~PVLiiHgt 201 (258)
T KOG1552|consen 126 YG-SPERIILYGQSIGTVPTVDLASRYPLAAVVLHSPFTSGMRVAFPDTKTTYCFDAFPNIEK-ISKITCPVLIIHGT 201 (258)
T ss_pred cC-CCceEEEEEecCCchhhhhHhhcCCcceEEEeccchhhhhhhccCcceEEeeccccccCc-ceeccCCEEEEecc
Confidence 35 666667776655443 35777666678888876544443221 112222 46778999999753
No 270
>PF06050 HGD-D: 2-hydroxyglutaryl-CoA dehydratase, D-component ; InterPro: IPR010327 Degradation of glutamate via the hydroxyglutarate pathway involves the syn-elimination of water from 2-hydroxyglutaryl-CoA. This anaerobic process is catalysed by 2-hydroxyglutaryl-CoA dehydratase, an enzyme with two components (A and D) that reversibly associate during reaction cycles. This component contains one non-reducible [4Fe-4S]2+ cluster and a reduced riboflavin 5'-monophosphate [].; PDB: 3O3O_B 3O3N_D 3O3M_D.
Probab=26.74 E-value=1e+02 Score=25.99 Aligned_cols=50 Identities=16% Similarity=0.101 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccC-CceEEEEcC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSF-NCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a-~~PVLvV~~ 136 (211)
-.+.+.+.++++++|.+|...+.-..... .-....+.+++. ++|+|.+..
T Consensus 274 r~~~~~~~~~~~~~dgvi~~~~~~C~~~~~~~~~l~~~~~~~~gIP~l~le~ 325 (349)
T PF06050_consen 274 RIEYIDDLIEKYGADGVIFHGHKGCDPYSYDQPLLKEALREFLGIPVLFLEG 325 (349)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEETT-HHHHCCHHHHHHHHHCCHT--EEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEhHhcCCCcHHHHHHHHHHHHHHhcCCCeEeecc
Confidence 78999999999999999999876543222 222555677777 999999964
No 271
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=26.64 E-value=4.2e+02 Score=22.83 Aligned_cols=20 Identities=30% Similarity=0.365 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhCCCEEEEec
Q 028280 88 GARIAALVREIGASALVVGL 107 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~ 107 (211)
.++|.+.+++.++|+||...
T Consensus 55 ~~e~~~~~~~~~~~~vi~~~ 74 (351)
T TIGR03156 55 VEEIAELVEELEADLVIFDH 74 (351)
T ss_pred HHHHHHHHHhcCCCEEEECC
Confidence 78888888888889888874
No 272
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=26.58 E-value=3.2e+02 Score=21.47 Aligned_cols=85 Identities=11% Similarity=0.013 Sum_probs=45.9
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE--
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV-- 81 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v-- 81 (211)
+||.|-+.++.....++..+..-.. ....+.+ |++..... ...+++.+ .|+++...-
T Consensus 2 ~ki~vl~sg~gs~~~~ll~~~~~~~-~~~~I~~--vvs~~~~~-----------------~~~~~a~~-~gIp~~~~~~~ 60 (200)
T PRK05647 2 KRIVVLASGNGSNLQAIIDACAAGQ-LPAEIVA--VISDRPDA-----------------YGLERAEA-AGIPTFVLDHK 60 (200)
T ss_pred ceEEEEEcCCChhHHHHHHHHHcCC-CCcEEEE--EEecCccc-----------------hHHHHHHH-cCCCEEEECcc
Confidence 6788888777666666666543332 3344444 33332210 02333443 377754311
Q ss_pred -eeC-CCHHHHHHHHHHHhCCCEEEEecCC
Q 028280 82 -TEG-DQEGARIAALVREIGASALVVGLHD 109 (211)
Q Consensus 82 -~~G-~~~~~~I~~~a~~~~adLIVmG~~~ 109 (211)
..+ .....++.+..++.++|++|+-..+
T Consensus 61 ~~~~~~~~~~~~~~~l~~~~~D~iv~~~~~ 90 (200)
T PRK05647 61 DFPSREAFDAALVEALDAYQPDLVVLAGFM 90 (200)
T ss_pred ccCchhHhHHHHHHHHHHhCcCEEEhHHhh
Confidence 111 1024577888889999999986543
No 273
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=26.52 E-value=1.2e+02 Score=19.11 Aligned_cols=18 Identities=6% Similarity=0.038 Sum_probs=7.9
Q ss_pred EEEEecCCHHHHHHHHHH
Q 028280 6 IVVIVEDVDAARAALLWA 23 (211)
Q Consensus 6 ILv~vD~s~~s~~al~~A 23 (211)
|.+++|.+...+.+..+.
T Consensus 50 Iii~~D~D~~G~~~~~~i 67 (76)
T smart00493 50 VILATDPDREGEAIAWKL 67 (76)
T ss_pred EEEEcCCChhHHHHHHHH
Confidence 444444444444443333
No 274
>COG2262 HflX GTPases [General function prediction only]
Probab=26.49 E-value=4.2e+02 Score=23.60 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=30.0
Q ss_pred EEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 79 IIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 79 ~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
+.+-.|. .++|...++..+||+||....-.. +-...+-+.++|-|+
T Consensus 51 ~~iG~GK--~eEi~~~v~~~~ad~VIf~~~LsP------~Q~~NLe~~l~~kVI 96 (411)
T COG2262 51 TYIGSGK--LEEIAEAVEETGADLVIFDHELSP------SQLRNLEKELGVKVI 96 (411)
T ss_pred eecCcch--HHHHHHHHHhcCCCEEEECCcCCH------HHHHHHHHHHCCEEE
Confidence 3344455 899999999999999999854221 112244555566654
No 275
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=26.48 E-value=4.3e+02 Score=22.98 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=41.6
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+.+++... -+++......+ ....++.+++.+.|.|.|+-.-..- .-....+.+++..++||+++..
T Consensus 17 i~~~l~~~--~~i~vv~~a~n--g~~a~~~~~~~~PDVi~ld~emp~m--dgl~~l~~im~~~p~pVimvss 82 (350)
T COG2201 17 ISDILNSD--PDIEVVGTARN--GREAIDKVKKLKPDVITLDVEMPVM--DGLEALRKIMRLRPLPVIMVSS 82 (350)
T ss_pred HHHHHhcC--CCeEEEEecCC--HHHHHHHHHhcCCCEEEEecccccc--cHHHHHHHHhcCCCCcEEEEec
Confidence 45555443 22344333333 5566677788999999999754321 0112456888889999999976
No 276
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=26.48 E-value=3.3e+02 Score=21.67 Aligned_cols=73 Identities=15% Similarity=0.046 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhCCCcEEEEEeeCCCH---------HHHHHHHHHHhCCCEEEEecCCCCccccccc--HHHHHHccCCc
Q 028280 61 LALSFKDICNDFFNTNVEIIVTEGDQE---------GARIAALVREIGASALVVGLHDRSFLHKLAM--SHNDISSSFNC 129 (211)
Q Consensus 61 ~~~~l~~~~~~~~~i~~~~~v~~G~~~---------~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs--~a~~vl~~a~~ 129 (211)
....+.+.|.+ .++++-.+...-+.. .....+.+.+.++|+|=..+.+..+. ..+. .-.+++..++|
T Consensus 113 ~i~~v~~~~~~-~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~-t~~~~~~~~~~~~~~~~ 190 (236)
T PF01791_consen 113 EIAAVVEECHK-YGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGA-TPEDVELMRKAVEAAPV 190 (236)
T ss_dssp HHHHHHHHHHT-SEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCS-HHHHHHHHHHHHHTHSS
T ss_pred HHHHHHHHHhc-CCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccc-cHHHHHHHHHHHHhcCC
Confidence 33445556653 356555442222201 24566777889999999988744211 1333 44578888899
Q ss_pred e----EEEEc
Q 028280 130 R----VLAIK 135 (211)
Q Consensus 130 P----VLvV~ 135 (211)
| |.+--
T Consensus 191 p~~~~Vk~sG 200 (236)
T PF01791_consen 191 PGKVGVKASG 200 (236)
T ss_dssp TTTSEEEEES
T ss_pred CcceEEEEeC
Confidence 9 77764
No 277
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=26.44 E-value=1.7e+02 Score=25.91 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCccccccc--HHHHHHccCCceEEEEcC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAM--SHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs--~a~~vl~~a~~PVLvV~~ 136 (211)
-.+.|.+.++++++|-||.=.+.--....+++ +-..+.++.++|+|.+--
T Consensus 338 R~~~l~~l~ke~~aDGVI~~~~~~C~~~~~e~~~~~~~l~e~~GIP~L~iE~ 389 (413)
T TIGR02260 338 RVDLLEKYINEYEADGLLINSIKSCNSFSAGQLLMMREIEKRTGKPAAFIET 389 (413)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCcchhhhHHHHHHHHHHcCCCEEEEEc
Confidence 36779999999999999998876543333333 345566669999999943
No 278
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=26.40 E-value=4e+02 Score=22.51 Aligned_cols=28 Identities=7% Similarity=-0.098 Sum_probs=20.2
Q ss_pred CCCCeEEEEecCCHH-HHHHHHHHHHhhc
Q 028280 1 MDVKKIVVIVEDVDA-ARAALLWALQNLL 28 (211)
Q Consensus 1 m~~k~ILv~vD~s~~-s~~al~~A~~la~ 28 (211)
|+.|++|-.-|++.. -...++.|..+-.
T Consensus 2 ~~~k~ll~i~dls~~~l~~ll~~A~~~k~ 30 (304)
T PRK00779 2 LMGRHFLSLDDLSPEELEELLDLAAELKK 30 (304)
T ss_pred CCCCcEeehhhCCHHHHHHHHHHHHHHHh
Confidence 667888888889877 4666777766544
No 279
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=26.29 E-value=2.6e+02 Score=22.19 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=29.0
Q ss_pred eeCCCHHHHHHHHHHHhC------CCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcC
Q 028280 82 TEGDQEGARIAALVREIG------ASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 82 ~~G~~~~~~I~~~a~~~~------adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~ 136 (211)
..|.|.+.++.++.+... .++||++-.-.+.... .-....++.+++ +-|+.+.+
T Consensus 127 ~GgTdi~~aL~~~~~~~~~~~~~~t~vvIiSDg~~~~~~~~~~~~l~~l~~r~-~rviwLnP 187 (222)
T PF05762_consen 127 GGGTDIGQALREFLRQYARPDLRRTTVVIISDGWDTNDPEPLAEELRRLRRRG-RRVIWLNP 187 (222)
T ss_pred CCccHHHHHHHHHHHHhhcccccCcEEEEEecccccCChHHHHHHHHHHHHhC-CEEEEECC
Confidence 445567777777777655 3577777642333332 333334554444 44444444
No 280
>COG0358 DnaG DNA primase (bacterial type) [DNA replication, recombination, and repair]
Probab=26.28 E-value=2.2e+02 Score=26.35 Aligned_cols=31 Identities=32% Similarity=0.286 Sum_probs=25.9
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEE
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVV 34 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l 34 (211)
++|+++.|++...+.|+..|++.+...+...
T Consensus 291 ~~vil~fDgD~AG~~Aa~ral~~~~~~~~~~ 321 (568)
T COG0358 291 KKVILCFDGDRAGRKAAKRALQLVLPLDFVG 321 (568)
T ss_pred CCEEEEeCChHHHHHHHHHHHHHhhhhccCC
Confidence 4699999999999999988988777766554
No 281
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=26.24 E-value=1.8e+02 Score=22.94 Aligned_cols=114 Identities=11% Similarity=-0.071 Sum_probs=59.1
Q ss_pred CCeEEEEecCCHHHHH-HHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHH--HHHHHHHHHHHHhhhCCCcEEE
Q 028280 3 VKKIVVIVEDVDAARA-ALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLK--GYQLALSFKDICNDFFNTNVEI 79 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~-al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~i~~~~ 79 (211)
-++|++++-||-.+-. +++.+-.+.+ .|.++.++- ..... +..... ..+....++.+. +.++.+
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k-~G~~V~vv~---T~aA~-----~~~~~~~~~~~~~~~l~~ls----~~~v~~ 71 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVD-EGAEVTPIV---SYTVQ-----TTDTRFGKAEEWIKKIEEIT----GNKVIN 71 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHh-CcCEEEEEE---CHhHH-----HHhhhcCChHHHHHHHHHHH----CCCcEE
Confidence 4689999999999988 5777666644 577765443 21110 110000 001111233332 333322
Q ss_pred EEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cc--c-HHHHHH---ccCCceEEEEcC
Q 028280 80 IVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LA--M-SHNDIS---SSFNCRVLAIKQ 136 (211)
Q Consensus 80 ~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~g--s-~a~~vl---~~a~~PVLvV~~ 136 (211)
.+. +. . ++.. ...+|++|+..-.-+.+.+ .| + .....+ -+..+||++++.
T Consensus 72 ~~~-~~-~---~isl--s~~aD~mvIAPaSanTLAKiA~GiaDnll~~aa~a~lke~~PvvlaPA 129 (196)
T PRK08305 72 TIV-EA-E---PLGP--KKLLDCMVIAPCTGNTMAKLANAITDSPVLMAAKATLRNQRPVVLAIS 129 (196)
T ss_pred ecC-CC-c---cCcc--ccccCEEEEEeCCHhHHHHHHccccCcHHHHHHHHHhcCCCCEEEEEC
Confidence 221 11 1 1222 2457999988877776666 23 2 222222 245799999985
No 282
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=26.05 E-value=1e+02 Score=26.73 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=37.6
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCC---Ccccc-ccc-HHHHHHccCCceEEEEcCCC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDR---SFLHK-LAM-SHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~---~~~~~-~gs-~a~~vl~~a~~PVLvV~~~~ 138 (211)
|+++.. +.++ -. -....+.++|++++|+..- +.+.. .|+ ...-+.++.++||+|+-+..
T Consensus 206 GI~vtl--I~Ds-a~---~~~M~~~~vd~VivGAd~I~~nG~v~NkiGT~~lAl~Ak~~~vPfyV~a~~~ 269 (344)
T PRK05720 206 GIDVTV--ITDN-MA---AHLMQTGKIDAVIVGADRIAANGDVANKIGTYQLAIAAKYHGVPFYVAAPSS 269 (344)
T ss_pred CCCEEE--Eccc-HH---HHHhcccCCCEEEEcccEEecCCCEeehhhHHHHHHHHHHhCCCEEEecccc
Confidence 666554 3333 22 2333345799999999863 33444 888 33356688889999986643
No 283
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.95 E-value=4.7e+02 Score=23.17 Aligned_cols=99 Identities=9% Similarity=0.020 Sum_probs=55.4
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhh-CCCcEEEEEe
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDF-FNTNVEIIVT 82 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~i~~~~~v~ 82 (211)
+++.|..| ...++.++..+. ..|.++..+.+..... . ..+.+..+++.. .+. ...+.
T Consensus 304 krv~i~g~----~~~~~~la~~L~-elGm~v~~~~~~~~~~----~-----------~~~~~~~~l~~~~~~~--~~~v~ 361 (435)
T cd01974 304 KKFALYGD----PDFLIGLTSFLL-ELGMEPVHVLTGNGGK----R-----------FEKEMQALLDASPYGA--GAKVY 361 (435)
T ss_pred CEEEEEcC----hHHHHHHHHHHH-HCCCEEEEEEeCCCCH----H-----------HHHHHHHHHhhcCCCC--CcEEE
Confidence 56666553 345666666666 5898886655432111 1 012233444331 122 23344
Q ss_pred eCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 83 EGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 83 ~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+. =..++.+.++..++|+++=++++ .++.++.++|.+.+-.
T Consensus 362 ~~~-d~~e~~~~i~~~~pDliiG~s~~-----------~~~a~~~gip~v~~~~ 403 (435)
T cd01974 362 PGK-DLWHLRSLLFTEPVDLLIGNTYG-----------KYIARDTDIPLVRFGF 403 (435)
T ss_pred ECC-CHHHHHHHHhhcCCCEEEECccH-----------HHHHHHhCCCEEEeeC
Confidence 444 26777888888899997655432 2566778888876643
No 284
>PRK14561 hypothetical protein; Provisional
Probab=25.85 E-value=3.2e+02 Score=21.24 Aligned_cols=87 Identities=8% Similarity=-0.030 Sum_probs=48.8
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G 84 (211)
+|+|++-|..+|-..+.++..+ ..+.++++..... .. .+.++..|+.. |++....-...
T Consensus 2 kV~ValSGG~DSslll~~l~~~-----~~v~a~t~~~g~~-------~e--------~~~a~~~a~~l-Gi~~~~v~~~~ 60 (194)
T PRK14561 2 KAGVLFSGGKDSSLAAILLERF-----YDVELVTVNFGVL-------DS--------WKHAREAAKAL-GFPHRVLELDR 60 (194)
T ss_pred EEEEEEechHHHHHHHHHHHhc-----CCeEEEEEecCch-------hH--------HHHHHHHHHHh-CCCEEEEECCH
Confidence 5899999988888877665433 3456666654311 00 12244444443 55554432221
Q ss_pred C--------------------CHHHHHHHHHHHhCCCEEEEecCCCCcc
Q 028280 85 D--------------------QEGARIAALVREIGASALVVGLHDRSFL 113 (211)
Q Consensus 85 ~--------------------~~~~~I~~~a~~~~adLIVmG~~~~~~~ 113 (211)
. .....+...+. .+++.|+.|.+.....
T Consensus 61 ~~~~~~~~~~~~~~~P~~~~~~l~~~~l~~~a-~g~~~Ia~G~n~DD~~ 108 (194)
T PRK14561 61 EILEKAVDMIIEDGYPNNAIQYVHEHALEALA-EEYDVIADGTRRDDRV 108 (194)
T ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHH-cCCCEEEEEecCCCcc
Confidence 1 02233444444 8899999999877644
No 285
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=25.68 E-value=1.8e+02 Score=25.08 Aligned_cols=79 Identities=11% Similarity=0.095 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhccCCC-EEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGD-VVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIA 92 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a-~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~ 92 (211)
..+++.+.+|.++|.+.+. +|+++|=...... . ..-..+.+.+..+++|+++++...++-- .-.++
T Consensus 147 ~~~eRi~r~Af~~A~~r~~~~Vt~v~KaNvl~~---t--------~glf~~~~~eva~~yP~V~~~~~~vDa~--~~~lv 213 (334)
T PRK08997 147 KGAERIVRFAYELARKEGRKKVTAVHKANIMKS---T--------SGLFLKVAREVALRYPDIEFEEMIVDAT--CMQLV 213 (334)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCCcchh---h--------hHHHHHHHHHHHhhCCCeEEEeeeHHHH--HHHHh
Confidence 4578889999999988764 5777764432110 0 0111223444445577777766543322 33333
Q ss_pred HHHHHhCCCEEEEec
Q 028280 93 ALVREIGASALVVGL 107 (211)
Q Consensus 93 ~~a~~~~adLIVmG~ 107 (211)
.- =.+.|.||+..
T Consensus 214 ~~--P~~fdVivt~N 226 (334)
T PRK08997 214 MN--PEQFDVIVTTN 226 (334)
T ss_pred hC--cccCcEEEEcC
Confidence 32 24678666653
No 286
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=25.67 E-value=3.8e+02 Score=22.07 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCC
Q 028280 91 IAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 91 I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+.+.|++.++|-|++...-...... +-.--..|...++.||++-..+
T Consensus 85 ~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~lYn~P 133 (285)
T TIGR00674 85 LTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVP 133 (285)
T ss_pred HHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECc
Confidence 4578888999999998754332222 3334446777889999987654
No 287
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=25.66 E-value=3.9e+02 Score=22.16 Aligned_cols=51 Identities=14% Similarity=0.084 Sum_probs=34.1
Q ss_pred HHHH--HHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCC
Q 028280 87 EGAR--IAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~--I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
..++ ..+.|++.++|-+++-..-...... +-.--..|+..++.||++-..+
T Consensus 85 t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P 139 (293)
T PRK04147 85 TAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIP 139 (293)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCc
Confidence 4444 4478888999999998764322221 3333446777889999998654
No 288
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=25.63 E-value=1.7e+02 Score=25.14 Aligned_cols=78 Identities=10% Similarity=0.164 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhccCCC-EEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGD-VVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIA 92 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a-~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~ 92 (211)
..+++.+.+|.++|.+.+. +|+++|=..-... ...-..+.+.+..+++++++++...++ . ....++
T Consensus 145 ~~~eRi~r~Af~~A~~r~~k~Vt~v~KaNvl~~-----------t~glf~~~~~eva~~yp~v~~~~~~vD-a-~~~~lv 211 (333)
T TIGR00175 145 DKSERIARYAFEYARKNGRKKVTAVHKANIMKL-----------ADGLFLNVCREVAKEYPDITFESMIVD-N-TCMQLV 211 (333)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECCccchh-----------hHHHHHHHHHHHHHHCCCCeeeeeeHH-H-HHHHHh
Confidence 3478889999999988764 5777764332110 011112234444555778887776442 2 333333
Q ss_pred HHHHHhCCCEEEEe
Q 028280 93 ALVREIGASALVVG 106 (211)
Q Consensus 93 ~~a~~~~adLIVmG 106 (211)
.- -.+.|.||..
T Consensus 212 ~~--P~~fdViVt~ 223 (333)
T TIGR00175 212 SR--PSQFDVMVMP 223 (333)
T ss_pred cC--cccccEEEEc
Confidence 32 2456766554
No 289
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=25.61 E-value=1.9e+02 Score=23.87 Aligned_cols=39 Identities=10% Similarity=0.032 Sum_probs=28.6
Q ss_pred CCCEEEEecCCC---Ccccc-ccc-HHHHHHccCCceEEEEcCC
Q 028280 99 GASALVVGLHDR---SFLHK-LAM-SHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 99 ~adLIVmG~~~~---~~~~~-~gs-~a~~vl~~a~~PVLvV~~~ 137 (211)
++|.+++|++.- +++-. .|+ ...-+.++.++||+|+-..
T Consensus 151 ~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~~vPv~V~~~s 194 (253)
T PRK06372 151 NVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYLKKPFYSLTIS 194 (253)
T ss_pred hCCEEEECccEEecCCCEeehhhHHHHHHHHHHcCCCEEEEeec
Confidence 489999999872 34444 888 3335668889999998653
No 290
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=25.41 E-value=1.6e+02 Score=25.66 Aligned_cols=79 Identities=8% Similarity=-0.013 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
..+++.+.+|.++|++...+|+++|=... .. ....-..+.+.+..+++|+++++...++- ..-.++.
T Consensus 164 ~~~eRi~r~Af~~A~~rr~kVt~v~KaNv---l~--------~t~~lf~~~~~eva~~yp~v~~~~~~vD~--~~~~lv~ 230 (352)
T TIGR02089 164 KGVERIMRFAFELAQKRRKHLTSATKSNG---IR--------HSMPFWDEVFAEVAAEYPDVEWDSYHIDA--LAARFVL 230 (352)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCcc---hh--------hhhHHHHHHHHHHHhhCCCceEeeehHHH--HHHHHhc
Confidence 45788889999999877556777765332 10 00111122344455567787776653322 2333333
Q ss_pred HHHHhCCCEEEEec
Q 028280 94 LVREIGASALVVGL 107 (211)
Q Consensus 94 ~a~~~~adLIVmG~ 107 (211)
-= .+.|.||+..
T Consensus 231 ~P--~~fDVivt~N 242 (352)
T TIGR02089 231 KP--ETFDVIVASN 242 (352)
T ss_pred Ch--hhCcEEEecc
Confidence 22 4678666653
No 291
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=25.35 E-value=1.6e+02 Score=25.58 Aligned_cols=78 Identities=8% Similarity=0.045 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
..+++.+.+|.++|.+.+.+|+++|=..... . . . -..+.+.+..+++++++++...++. ....++.
T Consensus 166 ~~~~Ri~r~Af~~A~~r~~~Vt~v~KaNvl~-~--~--g-------lf~~~~~eva~eyp~i~~~~~~vDa--~~~~lv~ 231 (358)
T PRK00772 166 EEIERIARVAFELARKRRKKVTSVDKANVLE-S--S--R-------LWREVVTEVAKEYPDVELSHMYVDN--AAMQLVR 231 (358)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECccccc-c--c--h-------HHHHHHHHHHhHCCCceEEEEeHHH--HHHHHhh
Confidence 4578888899999987766777777543221 0 1 1 1112344444567888877754322 2333333
Q ss_pred HHHHhCCCEEEEec
Q 028280 94 LVREIGASALVVGL 107 (211)
Q Consensus 94 ~a~~~~adLIVmG~ 107 (211)
-= .+.|.||+..
T Consensus 232 ~P--~~fDViv~~N 243 (358)
T PRK00772 232 NP--KQFDVIVTEN 243 (358)
T ss_pred Cc--ccCeEEeecC
Confidence 22 4578776654
No 292
>PLN02285 methionyl-tRNA formyltransferase
Probab=25.08 E-value=4.4e+02 Score=22.56 Aligned_cols=22 Identities=9% Similarity=0.154 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCEEEEecCCC
Q 028280 89 ARIAALVREIGASALVVGLHDR 110 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~ 110 (211)
+++++..++.++|++|+...++
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~~~ 104 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAYGN 104 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHhhh
Confidence 4566777888999999987543
No 293
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=24.96 E-value=2.2e+02 Score=24.46 Aligned_cols=79 Identities=14% Similarity=0.090 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhhccC----C-CEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHH
Q 028280 14 DAARAALLWALQNLLRF----G-DVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEG 88 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~----~-a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~ 88 (211)
..+++.+.+|.++|.+. + .+|+++|=..-.. ....-..+.+.+.++++++++++...++- ..
T Consensus 140 ~~~~Ri~r~Af~~A~~r~~~~~~k~Vt~v~KaNvl~-----------~t~glf~e~~~eva~~yp~i~~~~~~vDa--~~ 206 (330)
T PRK14025 140 KASERIFRFAFEMAKRRKKMGKEGKVTCAHKANVLK-----------KTDGLFKKTFYEVAKEYPDIKAEDYYVDA--MN 206 (330)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCeEEEEECCCchh-----------hhhHHHHHHHHHHHhhCCCeEEEeeeHHH--HH
Confidence 35788889999999877 3 3577776442211 00111122344555567787776654332 23
Q ss_pred HHHHHHHHHhCCCEEEEec
Q 028280 89 ARIAALVREIGASALVVGL 107 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~ 107 (211)
..++.-- .+.|.||+..
T Consensus 207 ~~lv~~P--~~fDVivt~N 223 (330)
T PRK14025 207 MYIITRP--QTFDVVVTSN 223 (330)
T ss_pred HHHhcCc--ccCcEEEEcC
Confidence 3333322 4678666653
No 294
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=24.94 E-value=3.5e+02 Score=21.40 Aligned_cols=86 Identities=23% Similarity=0.254 Sum_probs=43.3
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G 84 (211)
++.|++|.... . ++.+++...+..+..+-+.. .....++.+....+.+.+.+. +..+=.....+
T Consensus 2 ~L~vALD~~~~-~----~a~~i~~~~~~~v~~iKvG~----------~l~~~~G~~~l~~~i~~l~~~-~~~I~~D~K~~ 65 (226)
T PF00215_consen 2 KLQVALDPTDL-E----EALRIADELGDYVDIIKVGT----------PLFLAYGLEALPEIIEELKER-GKPIFLDLKLG 65 (226)
T ss_dssp EEEEEE-SSSH-H----HHHHHHHHHGGGSSEEEEEH----------HHHHHHCHHHHHHHHHHHHHT-TSEEEEEEEE-
T ss_pred CEEEEeCCCCH-H----HHHHHHHHhcCcceEEEECh----------HHHhcCChhhHHHHHHHHHHh-cCCEeeeeeec
Confidence 67889998765 3 33444444333333444432 122222211222233333332 34455556667
Q ss_pred CCHHHHHHHHH------HHhCCCEEEEec
Q 028280 85 DQEGARIAALV------REIGASALVVGL 107 (211)
Q Consensus 85 ~~~~~~I~~~a------~~~~adLIVmG~ 107 (211)
| .......++ .+.++|.+.+-.
T Consensus 66 D-ig~t~~~~~~~~~~~~~~gaD~vTv~~ 93 (226)
T PF00215_consen 66 D-IGNTVARYAEAGFAAFELGADAVTVHP 93 (226)
T ss_dssp S-SHHHHHHHHHSCHHHHTTTESEEEEEG
T ss_pred c-cchHHHHHHHHhhhhhcCCCcEEEEec
Confidence 7 777777777 478888887654
No 295
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=24.71 E-value=3e+02 Score=20.45 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=22.3
Q ss_pred HHHHHHHHhCCCEEEEecCCCCcccc
Q 028280 90 RIAALVREIGASALVVGLHDRSFLHK 115 (211)
Q Consensus 90 ~I~~~a~~~~adLIVmG~~~~~~~~~ 115 (211)
-++++|++.+++.+|-|-+..+.++.
T Consensus 73 l~v~~~~~~~a~~ivrGlR~~~Dfey 98 (140)
T PRK13964 73 LTAEIAKKLGANFLIRSARNNIDFQY 98 (140)
T ss_pred cHHHHHHHCCCeEEEEecCCCccHHH
Confidence 35789999999999999999777765
No 296
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=24.61 E-value=1e+02 Score=25.13 Aligned_cols=31 Identities=29% Similarity=0.520 Sum_probs=21.1
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHV 39 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV 39 (211)
..++|++++|.+++ .++.|...++.+.+.|=
T Consensus 35 ~v~~I~~alD~t~~-------vi~~Ai~~~~dlIitHH 65 (249)
T TIGR00486 35 EVKKVVVAVDASES-------VADEAVRLGADLIITHH 65 (249)
T ss_pred ccCEEEEEecCCHH-------HHHHHHHCCCCEEEEcC
Confidence 36899999999984 33334444677777664
No 297
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=24.42 E-value=4.2e+02 Score=22.14 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=37.9
Q ss_pred CCcEEEEEeeCCCHHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+.+-.-+ |.+..++| .+.+++.++|-+++...-...... +-.--..|...++.||++-..
T Consensus 76 ~~pvi~gv--~~~t~~~i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn~ 140 (303)
T PRK03620 76 RVPVIAGA--GGGTAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNR 140 (303)
T ss_pred CCcEEEec--CCCHHHHHHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 45444444 33355554 477888999999987654322211 334445677788999999864
No 298
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=24.34 E-value=4.4e+02 Score=23.08 Aligned_cols=57 Identities=25% Similarity=0.204 Sum_probs=34.4
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--ccc--HHHHHHccCCceEEE
Q 028280 77 VEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAM--SHNDISSSFNCRVLA 133 (211)
Q Consensus 77 ~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs--~a~~vl~~a~~PVLv 133 (211)
+.+.+..+..-..++.+.+.+.++|+|++-.+-.+.... .+. ...++++..++||++
T Consensus 133 VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~ 193 (369)
T TIGR01304 133 VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA 193 (369)
T ss_pred eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE
Confidence 334444443247789999999999999986443221110 111 223566777889886
No 299
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=24.33 E-value=2e+02 Score=22.82 Aligned_cols=49 Identities=10% Similarity=-0.029 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccC-CceEEEE
Q 028280 86 QEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSF-NCRVLAI 134 (211)
Q Consensus 86 ~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a-~~PVLvV 134 (211)
-|.+.+++.+++.++|+|.+..........+..+.+.+-... .++|++-
T Consensus 126 vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vG 175 (213)
T cd02069 126 VPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIG 175 (213)
T ss_pred CCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEE
Confidence 379999999999999999998876555444555555554332 3555554
No 300
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=24.31 E-value=1.4e+02 Score=20.87 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=29.4
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
-+.+++.+..|..+...++ +++.++..|+++..+.-.+.
T Consensus 46 ~~d~~I~iS~sG~t~e~~~-~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 46 EDTLVIAISQSGETADTLA-ALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CCcEEEEEeCCcCCHHHHH-HHHHHHHcCCeEEEEECCCC
Confidence 4678899998888887665 67788888888777766543
No 301
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=24.28 E-value=4.8e+02 Score=22.71 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=49.9
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v 81 (211)
+.++|.+..+.++..+..++...+.++..|-++...-.++..... ... . ......+.++... .+ .++.+
T Consensus 171 ~w~~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa~~e~~~~~~~~-~~~---~----~~~~~~~~~~ik~-~~--a~vVv 239 (403)
T cd06361 171 GWNWVGIIITDDDYGRSALETFIIQAEANGVCIAFKEILPASLSD-NTK---L----NRIIRTTEKIIEE-NK--VNVIV 239 (403)
T ss_pred CCcEEEEEEecCchHHHHHHHHHHHHHHCCeEEEEEEEecCccCc-chh---H----HHHHHHHHHHHhc-CC--CeEEE
Confidence 456666666666666666666666776666555444344322111 000 0 0011112222211 13 34444
Q ss_pred eeCC-CHHHHHHHHHHHhCCCEEEEecCCC
Q 028280 82 TEGD-QEGARIAALVREIGASALVVGLHDR 110 (211)
Q Consensus 82 ~~G~-~~~~~I~~~a~~~~adLIVmG~~~~ 110 (211)
..+. +....+.+.+++.+.+.+.+|+.+-
T Consensus 240 v~~~~~~~~~l~~~a~~~g~~~~wigs~~w 269 (403)
T cd06361 240 VFARQFHVFLLFNKAIERNINKVWIASDNW 269 (403)
T ss_pred EEeChHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 4444 1456677888888888888887654
No 302
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=24.22 E-value=3.3e+02 Score=20.82 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCcccc---cccHHHHHHccCCceEEEEc
Q 028280 89 ARIAALVREIGASALVVGLHDRSFLHK---LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~~~~~~---~gs~a~~vl~~a~~PVLvV~ 135 (211)
+-++++|++.++..||=|-+.-+.++. +...-.++.. .+-.+.+.
T Consensus 72 ~Llvd~ak~~~a~~ivRGLR~~sDfeYE~qma~~N~~L~~--eveTvFl~ 119 (159)
T COG0669 72 GLLVDYAKKLGATVLVRGLRAVSDFEYELQMAHMNRKLAP--EVETVFLM 119 (159)
T ss_pred cHHHHHHHHcCCCEEEEeccccchHHHHHHHHHHHHhhcc--cccEEEec
Confidence 368899999999999999998887776 4444334433 44444443
No 303
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=24.21 E-value=4.8e+02 Score=22.73 Aligned_cols=117 Identities=15% Similarity=0.063 Sum_probs=62.5
Q ss_pred eEEEEecC-C-HHHHHHHHHHHHhhcc---CCCE-EEEEEEecCCCc--cchHH---------HHHHHHHHHHHHHHHHH
Q 028280 5 KIVVIVED-V-DAARAALLWALQNLLR---FGDV-VTLLHVFPSLNS--RNRKK---------LRLLRLKGYQLALSFKD 67 (211)
Q Consensus 5 ~ILv~vD~-s-~~s~~al~~A~~la~~---~~a~-l~llhV~~~~~~--~~~~~---------~~~~~~~~~~~~~~l~~ 67 (211)
+.||.+.. | .+.+.++++|..+... ..++ +.++-++-..+. ..+.. ....++....+.+.+.+
T Consensus 54 rllvI~GPCSI~d~~~aleyA~~Lk~l~~~~~d~l~ivmR~y~eKPRT~~gwkGli~DP~ldgs~~i~~GL~~~R~ll~~ 133 (353)
T PRK12755 54 RLLVVVGPCSIHDPEAALEYARRLKALADELSDRLLIVMRVYFEKPRTTVGWKGLINDPHLDGSFDIEEGLRIARKLLLD 133 (353)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCcCCcCCCCCccccccccHHHHHHHHHHHHHH
Confidence 44444442 2 3456678888777664 2233 346666543221 11110 00011222222222333
Q ss_pred HHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCC-CcccccccHHHHHHccCCceEEEEc
Q 028280 68 ICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDR-SFLHKLAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 68 ~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~-~~~~~~gs~a~~vl~~a~~PVLvV~ 135 (211)
..+. |+.+-+++.+-. ..+.+.++ +|++-+|++.- ++.. ..++....|||.+=+
T Consensus 134 -~~e~-Glp~atE~ld~~-~~~y~~Dl-----vs~~aIGARt~esq~h------re~aSgl~~PVgfKn 188 (353)
T PRK12755 134 -LVEL-GLPLATEALDPI-SPQYLGDL-----ISWGAIGARTTESQTH------REMASGLSMPVGFKN 188 (353)
T ss_pred -HHHh-CCCEEEEecCcc-cHHHHHhh-----hhheeeccchhcCHHH------HHHhcCCCCeeEecC
Confidence 3333 889999888877 55655555 58899999753 3322 367777889998843
No 304
>PRK00861 putative lipid kinase; Reviewed
Probab=23.90 E-value=4.2e+02 Score=21.91 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=30.8
Q ss_pred CcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 75 TNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 75 i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
.+++........-+.++++.+...+.|+||+.. |-+.+. .+...++ ...+|+-++|.+
T Consensus 33 ~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~G-GDGTl~---evv~~l~-~~~~~lgviP~G 90 (300)
T PRK00861 33 MDLDIYLTTPEIGADQLAQEAIERGAELIIASG-GDGTLS---AVAGALI-GTDIPLGIIPRG 90 (300)
T ss_pred CceEEEEccCCCCHHHHHHHHHhcCCCEEEEEC-ChHHHH---HHHHHHh-cCCCcEEEEcCC
Confidence 344444333332466677666666778776543 333332 2333443 346777777753
No 305
>PF07799 DUF1643: Protein of unknown function (DUF1643); InterPro: IPR012441 This entry is represented by Bacteriophage D3, Orf41.6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are all sequences found within hypothetical proteins expressed by various bacteria, archaea and phage. The region concerned is approximately 150 residues long.
Probab=23.74 E-value=2.9e+02 Score=19.96 Aligned_cols=93 Identities=15% Similarity=0.292 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhhccCC-CEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHH
Q 028280 16 ARAALLWALQNLLRFG-DVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAAL 94 (211)
Q Consensus 16 s~~al~~A~~la~~~~-a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~ 94 (211)
++..+.....+++..| ..+.+++..+.-...... +.. +.+ ..|.+-.+.|.+.
T Consensus 30 ~D~T~~~~~~~a~~~gyg~~~i~NLf~~~~t~p~~---------------l~~-~~~----------~~~~~N~~~i~~~ 83 (136)
T PF07799_consen 30 DDPTIRRCINFARRWGYGGVIIVNLFPQRSTDPKD---------------LKK-APD----------PIGPENDEHIREA 83 (136)
T ss_pred CCHHHHHHHHHHhhcCCCeEEEEEecccccCCHHH---------------HHh-ccC----------cccHhHHHHHHHH
Confidence 4567778888888877 688888888753321111 100 000 1122135666676
Q ss_pred HHHhCCCEEEEecCCCCcccc-cccHHHHHHccC---CceEEEEcCC
Q 028280 95 VREIGASALVVGLHDRSFLHK-LAMSHNDISSSF---NCRVLAIKQP 137 (211)
Q Consensus 95 a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a---~~PVLvV~~~ 137 (211)
++ ++|.||++....+.... .-.+. .++... .+++..+...
T Consensus 84 ~~--~~~~vv~AWG~~~~~~~r~~~v~-~~l~~~~~~~~~~~~~~~t 127 (136)
T PF07799_consen 84 LK--EADDVVLAWGNHGKLRKRANEVL-ELLKEYLKKGKKVYCLGLT 127 (136)
T ss_pred Hh--ccCcEEEEeCCCcccchHHHHHH-HHHHHHhhcCCceEEeccc
Confidence 66 45888888876655433 22222 233333 6677777643
No 306
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=23.70 E-value=2.4e+02 Score=23.34 Aligned_cols=62 Identities=21% Similarity=0.082 Sum_probs=30.1
Q ss_pred CCCcEEEEEeeCCCHHHHHHHHHHHhC-CCEEEEecCCCCcccccccHHHHHHc-cCCceEEEEc
Q 028280 73 FNTNVEIIVTEGDQEGARIAALVREIG-ASALVVGLHDRSFLHKLAMSHNDISS-SFNCRVLAIK 135 (211)
Q Consensus 73 ~~i~~~~~v~~G~~~~~~I~~~a~~~~-adLIVmG~~~~~~~~~~gs~a~~vl~-~a~~PVLvV~ 135 (211)
.++.++.....++...+++++.+...+ +|-|++...+.+.-.... ....+-. ....||++=.
T Consensus 144 adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~-~l~~vr~~~~~~Pvllgg 207 (257)
T TIGR00259 144 ADIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTTGTEVDLE-LLKLAKETVKDTPVLAGS 207 (257)
T ss_pred eceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHH-HHHHHHhccCCCeEEEEC
Confidence 344444433222224455555444444 999999876554322111 1222322 2357887753
No 307
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=23.62 E-value=3.6e+02 Score=21.07 Aligned_cols=116 Identities=17% Similarity=0.023 Sum_probs=55.3
Q ss_pred HHHHHHHhhccCCCEEEEEEEecCCCccc-hHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCC---HHHHHHHH
Q 028280 19 ALLWALQNLLRFGDVVTLLHVFPSLNSRN-RKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQ---EGARIAAL 94 (211)
Q Consensus 19 al~~A~~la~~~~a~l~llhV~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~---~~~~I~~~ 94 (211)
.+..++..+...|..-+=+|...+..... ...-..+....+...+.++.+.+.. ++.+.+.+..|.+ ....++..
T Consensus 68 ~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~-~~~v~vk~r~~~~~~~~~~~~~~~ 146 (231)
T cd02801 68 TLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAV-PIPVTVKIRLGWDDEEETLELAKA 146 (231)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc-CCCEEEEEeeccCCchHHHHHHHH
Confidence 34445666666676666667654422110 0000000111111222233332222 3455555555431 34566677
Q ss_pred HHHhCCCEEEEecCCCCc-ccc--cccHHHHHHccCCceEEEEc
Q 028280 95 VREIGASALVVGLHDRSF-LHK--LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 95 a~~~~adLIVmG~~~~~~-~~~--~gs~a~~vl~~a~~PVLvV~ 135 (211)
..+.++|.|.+-.+.... ... .-.....+.+..++||+..-
T Consensus 147 l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~G 190 (231)
T cd02801 147 LEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANG 190 (231)
T ss_pred HHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeC
Confidence 778899999885543211 111 11233466667789988864
No 308
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=23.52 E-value=2.5e+02 Score=24.33 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhCCCEEE-Eec
Q 028280 88 GARIAALVREIGASALV-VGL 107 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIV-mG~ 107 (211)
.+.+++.+++.++|.|| +|.
T Consensus 76 v~~~~~~~~~~~~D~IIaiGG 96 (382)
T PRK10624 76 VKEGVEVFKASGADYLIAIGG 96 (382)
T ss_pred HHHHHHHHHhcCCCEEEEeCC
Confidence 45666788888999887 664
No 309
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=23.36 E-value=1.9e+02 Score=25.81 Aligned_cols=51 Identities=4% Similarity=0.068 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHhCCCEEEEecCCCCccccccc-HHHHHHccCCceEEEEc
Q 028280 85 DQEGARIAALVREIGASALVVGLHDRSFLHKLAM-SHNDISSSFNCRVLAIK 135 (211)
Q Consensus 85 ~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs-~a~~vl~~a~~PVLvV~ 135 (211)
+.-.+.|.+.++++++|-||.=.+..-....+++ ...+.+.+.++|+|.+-
T Consensus 347 ~~R~~~l~~li~e~~vDGVI~~~~~~C~~~s~e~~~ik~~l~~~GIP~L~ie 398 (430)
T TIGR03191 347 RIKSEMMLNIARDWNVDGCMLHLNRGCEGLSIGIMENRLAIAKAGIPIMTFE 398 (430)
T ss_pred hHHHHHHHHHHHHHCCCEEEEcCCCCCccchHhHHHHHHHHHHcCCCEEEEE
Confidence 3357889999999999999998766443333444 33455678899999994
No 310
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=23.27 E-value=2.2e+02 Score=22.87 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=19.9
Q ss_pred EeeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 81 VTEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
.+.|- +..+-+..+.+.++|.+|+|+.
T Consensus 177 ~VdGG-I~~~ti~~~~~aGad~iVvGsa 203 (228)
T PTZ00170 177 QVDGG-INLETIDIAADAGANVIVAGSS 203 (228)
T ss_pred EECCC-CCHHHHHHHHHcCCCEEEEchH
Confidence 35566 6666666777789999999964
No 311
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=23.26 E-value=2.8e+02 Score=20.29 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=23.5
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH--hCCCEEEEe
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVRE--IGASALVVG 106 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~--~~adLIVmG 106 (211)
+.+++++. |.++......+|| .+.|.+..++ .++|+||+.
T Consensus 32 l~~~l~~~-G~~v~~~~~v~Dd-~~~i~~~l~~~~~~~DliItt 73 (144)
T TIGR00177 32 LAALLEEA-GFNVSRLGIVPDD-PEEIREILRKAVDEADVVLTT 73 (144)
T ss_pred HHHHHHHC-CCeEEEEeecCCC-HHHHHHHHHHHHhCCCEEEEC
Confidence 44444443 7777666555663 4455554443 278999987
No 312
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=23.11 E-value=5.6e+02 Score=23.12 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=28.2
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
.++|+.+-|..+|-.|+.++... |.++..||+...
T Consensus 178 gk~lvllSGGiDS~va~~~~~kr----G~~v~~l~f~~g 212 (482)
T PRK01269 178 EDVLSLISGGFDSGVASYMLMRR----GSRVHYCFFNLG 212 (482)
T ss_pred CeEEEEEcCCchHHHHHHHHHHc----CCEEEEEEEecC
Confidence 47899999998888887766554 789999999754
No 313
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=23.09 E-value=3.2e+02 Score=22.61 Aligned_cols=65 Identities=15% Similarity=0.216 Sum_probs=37.6
Q ss_pred HHHHHHhhhCCCcEEEEEeeCCCHHHHHH---HHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEE
Q 028280 64 SFKDICNDFFNTNVEIIVTEGDQEGARIA---ALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLA 133 (211)
Q Consensus 64 ~l~~~~~~~~~i~~~~~v~~G~~~~~~I~---~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLv 133 (211)
.+.+.+.+. |+++......||++ +.|. +.+.+. +|+||+.. |-+.... .-+.+.+.+..+.|+.+
T Consensus 25 ~la~~L~~~-G~~v~~~~~VgD~~-~~I~~~l~~a~~r-~D~vI~tG-GLGPT~D-DiT~e~vAka~g~~lv~ 92 (255)
T COG1058 25 FLADELTEL-GVDLARITTVGDNP-DRIVEALREASER-ADVVITTG-GLGPTHD-DLTAEAVAKALGRPLVL 92 (255)
T ss_pred HHHHHHHhc-CceEEEEEecCCCH-HHHHHHHHHHHhC-CCEEEECC-CcCCCcc-HhHHHHHHHHhCCCccc
Confidence 344555543 99999999999944 3443 444454 99988753 3332221 01444566666666554
No 314
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=23.03 E-value=94 Score=20.18 Aligned_cols=47 Identities=17% Similarity=0.099 Sum_probs=29.7
Q ss_pred HHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCccc
Q 028280 64 SFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLH 114 (211)
Q Consensus 64 ~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~ 114 (211)
.+.+.+.+..+ .+...+..|+ .+..=.. +..+.|++|++........
T Consensus 6 ~i~~~l~~~~~-~i~~i~LfGS-~arg~~~--~~SDiDl~vi~~~~~~~~~ 52 (93)
T cd05403 6 EILEILRELLG-GVEKVYLFGS-YARGDAR--PDSDIDLLVIFDDPLDPLE 52 (93)
T ss_pred HHHHHHHHHhC-CccEEEEEee-eecCCCC--CCCCeeEEEEeCCCCCHHH
Confidence 34444444333 4667778887 5554433 4678999999988766543
No 315
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=22.97 E-value=1.4e+02 Score=25.01 Aligned_cols=86 Identities=14% Similarity=-0.004 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCc-cchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHH
Q 028280 12 DVDAARAALLWALQNLLRFGDVVTLLHVFPSLNS-RNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGAR 90 (211)
Q Consensus 12 ~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~ 90 (211)
-|-++..-+..++...+..|+++.---.+.+..+ ++.. ....+-+..+.+.++++ |..+.+++..-. -.+.
T Consensus 53 CsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQ------Glge~gL~~l~~a~~~~-Gl~vvtEvm~~~-~~e~ 124 (286)
T COG2876 53 CSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQ------GLGEEGLKLLKRAADET-GLPVVTEVMDVR-DVEA 124 (286)
T ss_pred cccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCccccc------ccCHHHHHHHHHHHHHc-CCeeEEEecCHH-HHHH
Confidence 3445556666667777777887766666655322 2111 12223344455555554 888888877655 4444
Q ss_pred HHHHHHHhCCCEEEEecCCC
Q 028280 91 IAALVREIGASALVVGLHDR 110 (211)
Q Consensus 91 I~~~a~~~~adLIVmG~~~~ 110 (211)
+.++ +|+|=+|++.-
T Consensus 125 ~~~y-----~DilqvGARNM 139 (286)
T COG2876 125 AAEY-----ADILQVGARNM 139 (286)
T ss_pred HHhh-----hhHHHhcccch
Confidence 4444 57777787653
No 316
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=22.95 E-value=2.3e+02 Score=25.00 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcc--c----ccccHHHHHHccCCceEEEE
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFL--H----KLAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~--~----~~gs~a~~vl~~a~~PVLvV 134 (211)
|++---...+++++|+|.+=..+.+.- . .+..+.+.|+..+.+|+++.
T Consensus 141 P~~wak~~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~ 194 (389)
T TIGR00381 141 PAEWARKCVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIG 194 (389)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEe
Confidence 333333334556777776655443322 1 15556666666677777666
No 317
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=22.83 E-value=5.1e+02 Score=22.53 Aligned_cols=50 Identities=20% Similarity=0.173 Sum_probs=36.1
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCC-CcccccccHHHHHHccCCceEEEEc
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDR-SFLHKLAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~-~~~~~~gs~a~~vl~~a~~PVLvV~ 135 (211)
|+.+-+++.+-. ..+.+.++ +|++-+|++.- ++. -...+....+||.+=+
T Consensus 137 GlpvatE~ld~~-~~~y~~dl-----vs~~~IGARt~esq~------hr~~asg~~~PVg~Kn 187 (349)
T PRK09261 137 GLPAATEFLDPI-TPQYIADL-----ISWGAIGARTTESQV------HRELASGLSCPVGFKN 187 (349)
T ss_pred CCCeEEEecccc-cHHHHHhh-----cceeeeccchhcCHH------HHHHhcCCCCeeEecC
Confidence 899999988877 55555444 69999999763 332 2367778899999844
No 318
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.77 E-value=3.8e+02 Score=21.05 Aligned_cols=39 Identities=0% Similarity=-0.038 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 91 IAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 91 I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+.+...+.++|-||+....... . -.-+...++||+++..
T Consensus 50 ~~~~l~~~~vdgiii~~~~~~~------~-~~~l~~~~ipvV~~~~ 88 (268)
T cd06277 50 LPSFLEDGKVDGIILLGGISTE------Y-IKEIKELGIPFVLVDH 88 (268)
T ss_pred HHHHHHHCCCCEEEEeCCCChH------H-HHHHhhcCCCEEEEcc
Confidence 3444445667777765432111 1 1234455677776643
No 319
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=22.69 E-value=2.2e+02 Score=19.64 Aligned_cols=60 Identities=10% Similarity=-0.003 Sum_probs=37.2
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCC--ceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFN--CRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~--~PVLvV~~ 136 (211)
|.++... ..+.+.+.+.+.+.+.++|+|.+........ ..-.....+.+..+ +++++--.
T Consensus 27 G~~v~~l--~~~~~~~~~~~~i~~~~pdiV~iS~~~~~~~-~~~~~~~~~~~~~p~~~~ivvGG~ 88 (125)
T cd02065 27 GFEVIDL--GVDVPPEEIVEAAKEEDADVVGLSALSTTHM-EAMKLVIEALKELGIDIPVVVGGA 88 (125)
T ss_pred CCEEEEc--CCCCCHHHHHHHHHHcCCCEEEEecchHhHH-HHHHHHHHHHHhcCCCCeEEEeCC
Confidence 5544432 2233678889999999999999987654432 12234445666665 66666543
No 320
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=22.67 E-value=77 Score=29.25 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCC---C----Ccccc-cccHHHHHHccCCceEEEE
Q 028280 87 EGARIAALVREIGASALVVGLHD---R----SFLHK-LAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~---~----~~~~~-~gs~a~~vl~~a~~PVLvV 134 (211)
..++|+..|++.+.|||++|.-- . ..+.+ ++.+-.+|+..-||-+=++
T Consensus 40 tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le~l 95 (646)
T KOG2310|consen 40 TFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLEIL 95 (646)
T ss_pred HHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeEEe
Confidence 46999999999999999999732 1 12222 5556666666666665554
No 321
>PRK11058 GTPase HflX; Provisional
Probab=22.62 E-value=4.9e+02 Score=23.15 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhCCCEEEEec
Q 028280 88 GARIAALVREIGASALVVGL 107 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~ 107 (211)
.++|.+.+++.++|+||+..
T Consensus 63 ~~e~~~~~~~~~~~~vi~~~ 82 (426)
T PRK11058 63 AVEIAEAVKATGASVVLFDH 82 (426)
T ss_pred HHHHHHHHHhcCCCEEEECC
Confidence 67777888888888888774
No 322
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=22.60 E-value=3.7e+02 Score=23.47 Aligned_cols=51 Identities=8% Similarity=0.082 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCC-c-----ccc-------------cccHHHHHHccCCceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRS-F-----LHK-------------LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~-~-----~~~-------------~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
-..++++.|++.+..+|+..+.+.- . +.. +......+..++.+||.+-=.+
T Consensus 39 ~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPValHLDH 108 (357)
T TIGR01520 39 TINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVVLHTDH 108 (357)
T ss_pred HHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 7899999999999999999887642 1 111 3446677888999999876443
No 323
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=22.59 E-value=3.8e+02 Score=22.49 Aligned_cols=50 Identities=6% Similarity=-0.004 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcc-c---ccccHHHHHHccC--CceEEEEcC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFL-H---KLAMSHNDISSSF--NCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~-~---~~gs~a~~vl~~a--~~PVLvV~~ 136 (211)
...++++.|++.+.-+|+..+.+.-.. . .+.........++ .+||.+-=.
T Consensus 30 ~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~lHLD 85 (288)
T TIGR00167 30 TINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVALHLD 85 (288)
T ss_pred HHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEEECC
Confidence 789999999999999999987764322 2 2666777788888 889887533
No 324
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=22.50 E-value=2.1e+02 Score=18.59 Aligned_cols=40 Identities=20% Similarity=0.118 Sum_probs=29.0
Q ss_pred CCeEEEEecCCHH-HHHHHHHHHHhhccCCCEEEEEEEecCC
Q 028280 3 VKKIVVIVEDVDA-ARAALLWALQNLLRFGDVVTLLHVFPSL 43 (211)
Q Consensus 3 ~k~ILv~vD~s~~-s~~al~~A~~la~~~~a~l~llhV~~~~ 43 (211)
||+|.+.- -|++ .+.|++-|+..|.+.-..|..+-|++..
T Consensus 6 YK~IelvG-tSp~S~d~Ai~~Ai~RA~~t~~~l~wfeV~~~r 46 (71)
T COG3360 6 YKKIELVG-TSPTSIDAAIANAIARAADTLDNLDWFEVVETR 46 (71)
T ss_pred EEEEEEEe-cCCccHHHHHHHHHHHHHhhhhcceEEEEEeec
Confidence 56665543 4444 6888899999998877888888888743
No 325
>PRK02551 flavoprotein NrdI; Provisional
Probab=22.26 E-value=49 Score=25.09 Aligned_cols=48 Identities=13% Similarity=0.258 Sum_probs=32.0
Q ss_pred HHHHHHHHH--HHh-CCCEEEEecCCCCcccccccHHHHHHccCCceEEEE
Q 028280 87 EGARIAALV--REI-GASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 87 ~~~~I~~~a--~~~-~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV 134 (211)
+.+.+.++. +.+ +.-.=|+|+..+++-..|+-.+..+.++.++|+|.-
T Consensus 79 vp~~v~dFL~~~~N~~~~~gVigsGNrNfg~~F~~aa~~ia~~~~vP~L~~ 129 (154)
T PRK02551 79 LTTPLGDFIAYHDNAKRCLGIIGSGNRNFNNQYCLTAKQYAKRFGFPMLAD 129 (154)
T ss_pred chHHHHHHHcchhhhhheEEEEeecccHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 345666666 222 233446776655543338889999999999999864
No 326
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=22.25 E-value=2.4e+02 Score=24.17 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHhhccCCCEEEEEE
Q 028280 13 VDAARAALLWALQNLLRFGDVVTLLH 38 (211)
Q Consensus 13 s~~s~~al~~A~~la~~~~a~l~llh 38 (211)
.+.+++.+.+|.++|.+.+.+|+++|
T Consensus 140 r~~~eRi~r~AF~~A~~r~~~Vt~v~ 165 (322)
T TIGR02088 140 REGSERIARFAFNLAKERNRKVTCVH 165 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 35578889999999988777655554
No 327
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=22.19 E-value=5.7e+02 Score=22.88 Aligned_cols=91 Identities=12% Similarity=-0.020 Sum_probs=47.6
Q ss_pred EEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCC
Q 028280 7 VVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQ 86 (211)
Q Consensus 7 Lv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~ 86 (211)
+++.-++..+..+...|..+.. .|-++.++..-...+ ...++++.++... ++.+... ..+.+
T Consensus 100 lvG~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D~~R~---------------aa~eQL~~la~~~-gvp~~~~-~~~~d 161 (437)
T PRK00771 100 LVGLQGSGKTTTAAKLARYFKK-KGLKVGLVAADTYRP---------------AAYDQLKQLAEKI-GVPFYGD-PDNKD 161 (437)
T ss_pred EECCCCCcHHHHHHHHHHHHHH-cCCeEEEecCCCCCH---------------HHHHHHHHHHHHc-CCcEEec-CCccC
Confidence 4455667777777777766664 466776665432110 0122344444432 4543321 11223
Q ss_pred HHHHHHHHHHH-hCCCEEEEecCCCCcccc
Q 028280 87 EGARIAALVRE-IGASALVVGLHDRSFLHK 115 (211)
Q Consensus 87 ~~~~I~~~a~~-~~adLIVmG~~~~~~~~~ 115 (211)
+.+.+-+..+. .+.|+||+.+.|+.....
T Consensus 162 ~~~i~~~al~~~~~~DvVIIDTAGr~~~d~ 191 (437)
T PRK00771 162 AVEIAKEGLEKFKKADVIIVDTAGRHALEE 191 (437)
T ss_pred HHHHHHHHHHHhhcCCEEEEECCCcccchH
Confidence 55433333222 245999999999887543
No 328
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.16 E-value=1.5e+02 Score=22.41 Aligned_cols=40 Identities=8% Similarity=0.207 Sum_probs=30.7
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
+-+.+++.+..|..+...++ +++.|+..|+++.++.-.+.
T Consensus 71 ~~~Dv~I~iS~sG~t~~~i~-~~~~ak~~g~~ii~IT~~~~ 110 (179)
T TIGR03127 71 KKGDLLIAISGSGETESLVT-VAKKAKEIGATVAAITTNPE 110 (179)
T ss_pred CCCCEEEEEeCCCCcHHHHH-HHHHHHHCCCeEEEEECCCC
Confidence 34678999999988888877 46668888998887766544
No 329
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=22.14 E-value=3.7e+02 Score=20.64 Aligned_cols=67 Identities=7% Similarity=0.096 Sum_probs=35.5
Q ss_pred HHHHHHhhhCCCcEEEEEeeCCCH--HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 64 SFKDICNDFFNTNVEIIVTEGDQE--GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 64 ~l~~~~~~~~~i~~~~~v~~G~~~--~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
.+++.+++. |+++...-..++ + ....++.+...++|.||+.....+... .-..+.+.++|++.+...
T Consensus 20 g~~~~~~~~-g~~l~~~~~~~~-~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~-----~~~~l~~~~ip~v~~~~~ 88 (264)
T cd01537 20 GIEEAAKAA-GYQVLLANSQND-AEKQLSALENLIARGVDGIIIAPSDLTAPT-----IVKLARKAGIPVVLVDRD 88 (264)
T ss_pred HHHHHHHHc-CCeEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEEecCCCcchh-----HHHHhhhcCCCEEEeccC
Confidence 344444443 555544333333 3 234444445558898888654332210 135567788898887543
No 330
>PF00539 Tat: Transactivating regulatory protein (Tat); InterPro: IPR001831 Like other lentiviruses, Human immunodeficiency virus 1 (HIV-1) encodes a trans-activating regulatory protein (Tat), which is essential for efficient transcription of the viral genome [, ]. Tat acts by binding to an RNA stem-loop structure, the trans-activating response element (TAR), found at the 5' ends of nascent HIV-1 transcripts. In binding to TAR, Tat alters the properties of the transcription complex, recruits a positive transcription elongation complex (P-TEFb) and hence increases the production of full-length viral RNA []. Tat protein also associates with RNA polymerase II complexes during early transcription elongation after the promoter clearance and before the synthesis of full-length TAR RNA transcript. This interaction of Tat with RNA polymerase II elongation complexes is P-TEFb-independent. There are two Tat binding sites on each transcription elongation complex; one is located on TAR RNA and the other one on RNA polymerase II near the exit site for nascent mRNA transcripts which suggests that two Tat molecules are involved in performing various functions during a single round of HIV-1 mRNA synthesis []. The minimum Tat sequence that can mediate specific TAR binding in vitro has been mapped to a basic domain of 10 amino acids, comprising mostly Arg and Lys residues. Regulatory activity, however, also requires the 47 N-terminal residues, which interact with components of the transcription complex and function as a transcriptional activation domain [, , ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0042025 host cell nucleus; PDB: 2W2H_D 1ZBN_B 1TVS_A 1TVT_A 3O6L_C 3O6M_C 3MI9_C 3MIA_C 1JFW_A 1TBC_A ....
Probab=22.12 E-value=43 Score=21.73 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=13.6
Q ss_pred CCceeeeecccccccCCcccccc
Q 028280 188 NPSAIIWRSRKSRRKGSSRREAH 210 (211)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~ 210 (211)
-..+|-|-++++||+.....++|
T Consensus 46 KgLGI~Y~r~rrRrr~~~~~k~h 68 (68)
T PF00539_consen 46 KGLGISYGRKRRRRRTPQSSKAH 68 (68)
T ss_dssp TSSSTSSSSSSCSCCCSSSCCCC
T ss_pred CCCcccccccccCcCCCCCcCCC
Confidence 45666665555566655555555
No 331
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=22.05 E-value=4.9e+02 Score=22.07 Aligned_cols=90 Identities=16% Similarity=0.040 Sum_probs=48.8
Q ss_pred EEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCC
Q 028280 7 VVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQ 86 (211)
Q Consensus 7 Lv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~ 86 (211)
+++..|+..+-.+...|..+.. .+.++.++-.-.. .. . ..+++..++... ++.+... ..+.+
T Consensus 119 lvGpnGsGKTTt~~kLA~~l~~-~g~~V~Li~~D~~-r~---~-----------a~eql~~~a~~~-~i~~~~~-~~~~d 180 (318)
T PRK10416 119 VVGVNGVGKTTTIGKLAHKYKA-QGKKVLLAAGDTF-RA---A-----------AIEQLQVWGERV-GVPVIAQ-KEGAD 180 (318)
T ss_pred EECCCCCcHHHHHHHHHHHHHh-cCCeEEEEecCcc-ch---h-----------hHHHHHHHHHHc-CceEEEe-CCCCC
Confidence 4455666667777777766654 4566666543211 10 0 111233333332 5554433 23333
Q ss_pred HHHHH---HHHHHHhCCCEEEEecCCCCccc
Q 028280 87 EGARI---AALVREIGASALVVGLHDRSFLH 114 (211)
Q Consensus 87 ~~~~I---~~~a~~~~adLIVmG~~~~~~~~ 114 (211)
+...+ +..+...++|+|++.+.|+....
T Consensus 181 pa~~v~~~l~~~~~~~~D~ViIDTaGr~~~~ 211 (318)
T PRK10416 181 PASVAFDAIQAAKARGIDVLIIDTAGRLHNK 211 (318)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCCcCC
Confidence 64433 33456678999999999987644
No 332
>PRK06988 putative formyltransferase; Provisional
Probab=21.89 E-value=4.9e+02 Score=21.97 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=25.8
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCH-HHHHHHHHHHhCCCEEEEecCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQE-GARIAALVREIGASALVVGLHD 109 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~-~~~I~~~a~~~~adLIVmG~~~ 109 (211)
+++++.+. |+++.. ..+ . .+++.+..++.++|++|+...+
T Consensus 47 v~~~A~~~-gip~~~---~~~-~~~~~~~~~l~~~~~Dliv~~~~~ 87 (312)
T PRK06988 47 VAAVAAEH-GIPVIT---PAD-PNDPELRAAVAAAAPDFIFSFYYR 87 (312)
T ss_pred HHHHHHHc-CCcEEc---ccc-CCCHHHHHHHHhcCCCEEEEehhc
Confidence 45555553 776543 122 2 3466778889999999988754
No 333
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=21.88 E-value=4.4e+02 Score=21.38 Aligned_cols=90 Identities=21% Similarity=0.257 Sum_probs=49.2
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCE-EEEEEEecCCC-ccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDV-VTLLHVFPSLN-SRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~-l~llhV~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
++++-+.+.++|-.|+-+|.. .|-. ..|+++.+... +...-..+. .+..+.++.-|+++.....
T Consensus 2 k~~aL~SGGKDS~~Al~~a~~----~G~eV~~Ll~~~p~~~dS~m~H~~n~----------~~~~~~Ae~~gi~l~~~~~ 67 (223)
T COG2102 2 KVIALYSGGKDSFYALYLALE----EGHEVVYLLTVKPENGDSYMFHTPNL----------ELAELQAEAMGIPLVTFDT 67 (223)
T ss_pred cEEEEEecCcHHHHHHHHHHH----cCCeeEEEEEEecCCCCeeeeeccch----------HHHHHHHHhcCCceEEEec
Confidence 355667788888777666654 4444 45556655433 111110011 0112222222666666555
Q ss_pred eCC--CHHHHHHHHHHHhCCCEEEEecC
Q 028280 83 EGD--QEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 83 ~G~--~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
.|. +-.+.+.+..+..++|-||.|+=
T Consensus 68 ~g~~e~eve~L~~~l~~l~~d~iv~GaI 95 (223)
T COG2102 68 SGEEEREVEELKEALRRLKVDGIVAGAI 95 (223)
T ss_pred CccchhhHHHHHHHHHhCcccEEEEchh
Confidence 551 14667777778888999999874
No 334
>PLN02329 3-isopropylmalate dehydrogenase
Probab=21.67 E-value=1.2e+02 Score=26.88 Aligned_cols=26 Identities=4% Similarity=-0.103 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEE
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHV 39 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV 39 (211)
..+++.+++|.++|.+.+.+|+++|=
T Consensus 211 ~~~eRI~r~AFe~A~~r~~kVT~v~K 236 (409)
T PLN02329 211 HEIDRIARVAFETARKRRGKLCSVDK 236 (409)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 45888899999999887666666654
No 335
>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.
Probab=21.58 E-value=3.3e+02 Score=19.80 Aligned_cols=34 Identities=15% Similarity=0.011 Sum_probs=24.7
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEec
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFP 41 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~ 41 (211)
.++|++-|..+|-.++.++.... +-++..+|+..
T Consensus 3 d~~v~lSGG~DSs~ll~l~~~~~---~~~v~~v~~~~ 36 (154)
T cd01996 3 DCIIGVSGGKDSSYALYLLKEKY---GLNPLAVTVDN 36 (154)
T ss_pred CEEEECCCchhHHHHHHHHHHHh---CCceEEEEeCC
Confidence 58899999999988887775532 23677777754
No 336
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=21.48 E-value=4.9e+02 Score=21.81 Aligned_cols=103 Identities=9% Similarity=0.022 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHH
Q 028280 16 ARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALV 95 (211)
Q Consensus 16 s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a 95 (211)
...+++.|.++.. .|+.++=+......+....-..+ ++.+.+...++.+.+.. ++. +..+. -...+++.|
T Consensus 37 ~~~a~~~a~~~~~-~GAdIIDIGgeSTrPg~~~v~~e---eE~~Rv~pvI~~l~~~~-~~~----ISIDT-~~~~va~~A 106 (282)
T PRK11613 37 LIDAVKHANLMIN-AGATIIDVGGESTRPGAAEVSVE---EELDRVIPVVEAIAQRF-EVW----ISVDT-SKPEVIRES 106 (282)
T ss_pred HHHHHHHHHHHHH-CCCcEEEECCCCCCCCCCCCCHH---HHHHHHHHHHHHHHhcC-CCe----EEEEC-CCHHHHHHH
Confidence 4678888888765 67876655544432221111001 11222222333333222 332 33334 445566666
Q ss_pred HHhCCCEE--EEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 96 REIGASAL--VVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 96 ~~~~adLI--VmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
-+.++|+| |.|-.... .-.++.+..|||+++..
T Consensus 107 L~~GadiINDI~g~~d~~--------~~~~~a~~~~~vVlmh~ 141 (282)
T PRK11613 107 AKAGAHIINDIRSLSEPG--------ALEAAAETGLPVCLMHM 141 (282)
T ss_pred HHcCCCEEEECCCCCCHH--------HHHHHHHcCCCEEEEcC
Confidence 66799976 44432111 11356778999999975
No 337
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=21.44 E-value=4.8e+02 Score=21.73 Aligned_cols=89 Identities=19% Similarity=0.180 Sum_probs=52.0
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE--
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII-- 80 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~-- 80 (211)
+.+++|+..|.-+|-..+..|..- .|.++..+.|..+.... ...+. ....+.+. |++.++.
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~---lG~~v~AvTv~sP~~p~-----~e~e~--------A~~~A~~i-Gi~H~~i~~ 79 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEA---LGDNVVAVTVDSPYIPR-----REIEE--------AKNIAKEI-GIRHEFIKM 79 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHH---hccceEEEEEecCCCCh-----hhhhH--------HHHHHHHh-CCcceeeeh
Confidence 458999988877776655544443 35778888887643221 11111 11111111 3332221
Q ss_pred ----------------EeeCCCHHHHHHHHHHHhCCCEEEEecCC
Q 028280 81 ----------------VTEGDQEGARIAALVREIGASALVVGLHD 109 (211)
Q Consensus 81 ----------------v~~G~~~~~~I~~~a~~~~adLIVmG~~~ 109 (211)
+..-. +.+.|...|++.+.|.|+=|+..
T Consensus 80 ~~~~~~~~~n~~~rCY~CK~~-v~~~l~~~a~~~Gyd~V~dGtNa 123 (269)
T COG1606 80 NRMDPEFKENPENRCYLCKRA-VYSTLVEEAEKRGYDVVADGTNA 123 (269)
T ss_pred hhcchhhccCCCCcchHHHHH-HHHHHHHHHHHcCCCEEEeCCcH
Confidence 11123 57889999999999999999864
No 338
>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]
Probab=21.33 E-value=5.8e+02 Score=22.62 Aligned_cols=109 Identities=17% Similarity=0.147 Sum_probs=58.4
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchH--HHHHHHHHH-----HHHHH-HHHHHHhh-
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRK--KLRLLRLKG-----YQLAL-SFKDICND- 71 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~--~~~~~~~~~-----~~~~~-~l~~~~~~- 71 (211)
|+.++|+++..+.-+.--++.|..+. .|..++-+.+.-..+..+.. ....+.-.. .+..+ ...+.+-.
T Consensus 2 ~~~kkvvLAYSGGLDTSv~i~wL~e~---~~~eVia~tadvGQ~eed~~~i~eKA~~~Ga~~~~viD~reeF~~~yi~~~ 78 (403)
T COG0137 2 MKVKKVVLAYSGGLDTSVAIKWLKEK---GGAEVIAVTADVGQPEEDLDAIREKALELGAEEAYVIDAREEFVEDYIFPA 78 (403)
T ss_pred CCCcEEEEEecCCccHHHHHHHHHHh---cCceEEEEEEeCCCChHHhHHHHHHHHHhCCceEEEeecHHHHHHHHHHHH
Confidence 45699999999998888888885543 34666666554332211111 000000000 00011 11122211
Q ss_pred -hCCCcEEEEEeeCCC-----HHHHHHHHHHHhCCCEEEEecCCCCc
Q 028280 72 -FFNTNVEIIVTEGDQ-----EGARIAALVREIGASALVVGLHDRSF 112 (211)
Q Consensus 72 -~~~i~~~~~v~~G~~-----~~~~I~~~a~~~~adLIVmG~~~~~~ 112 (211)
..+-.++..-.-|.. +++.+++.|++.+++.|.=|+.|++.
T Consensus 79 i~ana~Yeg~YpL~TalaRPLIak~lVe~A~k~ga~avaHGcTGKGN 125 (403)
T COG0137 79 IKANALYEGVYPLGTALARPLIAKKLVEAAKKEGADAVAHGCTGKGN 125 (403)
T ss_pred HHhhceeeccccccchhhHHHHHHHHHHHHHHcCCCEEEecCCCCCC
Confidence 112223332111221 46889999999999999999999864
No 339
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=21.26 E-value=1.5e+02 Score=27.39 Aligned_cols=121 Identities=15% Similarity=0.104 Sum_probs=60.5
Q ss_pred eEEEEec-CCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 5 KIVVIVE-DVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 5 ~ILv~vD-~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
.++|+++ |..+++.-+++..+.+...|....+-.+....... ..++.+.+.+.+++...-+++..--.
T Consensus 373 pvVVAIN~F~tDT~aEi~~I~~~~~~~Gv~~avs~~wa~GGeG-----------a~eLA~~Vv~a~ee~~~~~fk~LY~l 441 (557)
T PF01268_consen 373 PVVVAINRFPTDTDAEIELIRELCEELGVRAAVSEHWAKGGEG-----------AVELAEAVVEACEEEEPSNFKPLYDL 441 (557)
T ss_dssp -EEEEEE--TTS-HHHHHHHHHHCCCCCEEEEEC-HHHHGGGG-----------CHHHHHHHHHH-HHHS------SS-T
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEechhhccccc-----------HHHHHHHHHHHhhccCCCCcCcccCC
Confidence 4678887 66778888888888888888775444444322211 22333445555522112222222223
Q ss_pred CCCHHHHHHHHHHH-hCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCCCCCC
Q 028280 84 GDQEGARIAALVRE-IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAASP 141 (211)
Q Consensus 84 G~~~~~~I~~~a~~-~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~~~~~ 141 (211)
..++.+.|...|++ ++++=|.....-...+++ .. + ....+.||-+.|-+...+
T Consensus 442 ~~sI~eKIe~IA~eIYGA~~V~~S~~A~kqLk~---~e-~-~Gf~~LPVCmAKTqySlS 495 (557)
T PF01268_consen 442 EDSIEEKIETIATEIYGADGVEYSPKAKKQLKK---IE-K-LGFGNLPVCMAKTQYSLS 495 (557)
T ss_dssp TS-HHHHHHHHHHHTT--SEEEE-HHHHHHHHH---HH-H-CTTTTS-EEEES-SSSSS
T ss_pred cccHHHHHHHHHhhhcCCCcceeCHHHHHHHHH---HH-h-cCCCcCceEEecCCCCcc
Confidence 44578889999998 788888877644433331 10 0 123467999998655443
No 340
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=21.23 E-value=2.7e+02 Score=24.37 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhCCCEEE-Eec
Q 028280 88 GARIAALVREIGASALV-VGL 107 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIV-mG~ 107 (211)
.+.+++.+++.++|.|| +|.
T Consensus 67 v~~~~~~~~~~~~D~IIaiGG 87 (398)
T cd08178 67 VRKGLELMNSFKPDTIIALGG 87 (398)
T ss_pred HHHHHHHHHhcCCCEEEEeCC
Confidence 45677778888999888 664
No 341
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=21.22 E-value=5.8e+02 Score=22.54 Aligned_cols=84 Identities=13% Similarity=0.110 Sum_probs=44.4
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCE-EEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDV-VTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~-l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
.+.|++|..... .|++ ++++.+.. ...+-|..+ .....+......+++. .++..+...+..
T Consensus 174 ~L~vALD~~~~~-~A~~----i~~~l~~~~~~~iKvG~~----------L~~~~G~~iVk~Lr~~---~~~~~I~~DLK~ 235 (391)
T PRK13307 174 YLQVALDLPDLE-EVER----VLSQLPKSDHIIIEAGTP----------LIKKFGLEVISKIREV---RPDAFIVADLKT 235 (391)
T ss_pred eEEEecCCCCHH-HHHH----HHHhcccccceEEEECHH----------HHHHhCHHHHHHHHHh---CCCCeEEEEecc
Confidence 788899876543 4444 44444332 333344321 1112222222223322 234456666666
Q ss_pred CCCHHHHHHHHHHHhCCCEEEEec
Q 028280 84 GDQEGARIAALVREIGASALVVGL 107 (211)
Q Consensus 84 G~~~~~~I~~~a~~~~adLIVmG~ 107 (211)
-+ +...+++.+.+.++|++.+=.
T Consensus 236 ~D-i~~~vv~~~a~aGAD~vTVH~ 258 (391)
T PRK13307 236 LD-TGNLEARMAADATADAVVISG 258 (391)
T ss_pred cC-hhhHHHHHHHhcCCCEEEEec
Confidence 66 777777777788888887754
No 342
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=21.14 E-value=2.8e+02 Score=22.29 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhCCCEEEEec
Q 028280 88 GARIAALVREIGASALVVGL 107 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~ 107 (211)
.+.+.+.+++.++|+||+..
T Consensus 20 le~l~~~~~~~~~D~vv~~G 39 (224)
T cd07388 20 LEKLVGLAPETGADAIVLIG 39 (224)
T ss_pred HHHHHHHHhhcCCCEEEECC
Confidence 34555555555666665543
No 343
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=21.04 E-value=2.9e+02 Score=22.06 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCC
Q 028280 62 ALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHD 109 (211)
Q Consensus 62 ~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~ 109 (211)
..+.+.+.+++++..+|+ +|- +.-.=+..+.+.+|+.||.|+.-
T Consensus 157 m~KV~~lR~kyp~l~iev---DGG-v~~~ti~~~a~AGAN~iVaGsav 200 (224)
T KOG3111|consen 157 MPKVEWLREKYPNLDIEV---DGG-VGPSTIDKAAEAGANMIVAGSAV 200 (224)
T ss_pred HHHHHHHHHhCCCceEEe---cCC-cCcchHHHHHHcCCCEEEeccee
Confidence 344555555666666553 455 44445555667799999999853
No 344
>PF13155 Toprim_2: Toprim-like
Probab=21.02 E-value=1.6e+02 Score=19.52 Aligned_cols=28 Identities=32% Similarity=0.315 Sum_probs=19.6
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCC
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFG 31 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~ 31 (211)
++|++++|.++..+.+.+.........+
T Consensus 48 ~~i~l~~DnD~aG~~~~~~~~~~l~~~~ 75 (96)
T PF13155_consen 48 KKIVLAFDNDEAGRKAAEKLQKELKEEG 75 (96)
T ss_pred CcEEEEeCCCHHHHHHHHHHHHHHHhhC
Confidence 5677788877777777777766665544
No 345
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=20.97 E-value=3.5e+02 Score=23.36 Aligned_cols=20 Identities=40% Similarity=0.350 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhCCCEEE-Eec
Q 028280 88 GARIAALVREIGASALV-VGL 107 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIV-mG~ 107 (211)
.+.+.+.+++.++|.|| +|.
T Consensus 72 v~~~~~~~~~~~~D~IiavGG 92 (380)
T cd08185 72 VMEGAALAREEGCDFVVGLGG 92 (380)
T ss_pred HHHHHHHHHHcCCCEEEEeCC
Confidence 45666788888999988 665
No 346
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=20.94 E-value=2.8e+02 Score=24.01 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhCCCEEE-Eec
Q 028280 88 GARIAALVREIGASALV-VGL 107 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIV-mG~ 107 (211)
.+.+.+.+++.++|.|| +|.
T Consensus 74 v~~~~~~~~~~~~D~IIavGG 94 (377)
T cd08176 74 VKDGLAVFKKEGCDFIISIGG 94 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCC
Confidence 45677777888999988 664
No 347
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=20.85 E-value=61 Score=27.22 Aligned_cols=49 Identities=8% Similarity=-0.001 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHhCCCEEEEecCCCCccc---ccccHHHHHHccCCceEEEE
Q 028280 86 QEGARIAALVREIGASALVVGLHDRSFLH---KLAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 86 ~~~~~I~~~a~~~~adLIVmG~~~~~~~~---~~gs~a~~vl~~a~~PVLvV 134 (211)
....++++.|++.+..+|+.-+.+..... .++.....+.+++.+||.+=
T Consensus 28 e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPValH 79 (287)
T PF01116_consen 28 ETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVALH 79 (287)
T ss_dssp HHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEee
Confidence 37899999999999999998886543322 27778889999999999774
No 348
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=20.80 E-value=1.8e+02 Score=20.43 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=28.3
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
-+.+++++..|.++...++ +++.|+..|+.+..+.-.+.
T Consensus 47 ~~dl~I~iS~SG~t~~~~~-~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 47 EKSVVILASHSGNTKETVA-AAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCcEEEEEeCCCCChHHHH-HHHHHHHcCCeEEEEECCCC
Confidence 3568888888887777776 67777778887776655443
No 349
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=20.68 E-value=1.5e+02 Score=25.63 Aligned_cols=78 Identities=13% Similarity=0.196 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhccC-CCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHh-hhCCCcEEEEEeeCCCHHHHH
Q 028280 14 DAARAALLWALQNLLRF-GDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICN-DFFNTNVEIIVTEGDQEGARI 91 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~-~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~i~~~~~v~~G~~~~~~I 91 (211)
+.+++.+.+|.++|.+. ..+|+++|=..... .. +.. .+.+++..+ ++++++++...++. ....+
T Consensus 160 ~~~eRi~r~AF~~A~~r~~k~Vt~v~KaNvl~---~~--~lf-------~~~~~eva~~~yp~I~~~~~~vD~--~~~~L 225 (348)
T PF00180_consen 160 EGIERIARFAFEYARKRGRKKVTVVHKANVLK---ST--DLF-------REVFQEVAKQEYPDIEVEHMLVDA--AAMQL 225 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTTSEEEEEESTTTST---TH--HHH-------HHHHHHHHHHTHTTSEEEEEEHHH--HHHHH
T ss_pred chhhHHHHHHHHHHHHhCCceEEEEeccchhH---HH--HHH-------HHHHHHHHHhhcceeEeeeeechh--hhhee
Confidence 45889999999999998 57888887533211 11 111 223445555 67899888875532 34444
Q ss_pred HHHHHHhCCCEEEEec
Q 028280 92 AALVREIGASALVVGL 107 (211)
Q Consensus 92 ~~~a~~~~adLIVmG~ 107 (211)
+.-= .+.|.||+..
T Consensus 226 v~~P--~~fdViv~~N 239 (348)
T PF00180_consen 226 VKNP--EQFDVIVTPN 239 (348)
T ss_dssp HHSG--GGESEEEEEH
T ss_pred ecCC--cceeEEeecc
Confidence 4433 4678777663
No 350
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=20.66 E-value=1e+02 Score=22.41 Aligned_cols=48 Identities=13% Similarity=0.262 Sum_probs=30.9
Q ss_pred HHHHHHHHHH--HhCCCEE-EEecCCCCcccccccHHHHHHccCCceEEEE
Q 028280 87 EGARIAALVR--EIGASAL-VVGLHDRSFLHKLAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 87 ~~~~I~~~a~--~~~adLI-VmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV 134 (211)
+.+.+.++.+ ++.--+. |+|+..+++-..|+-.++.+..+.++|+|.-
T Consensus 57 vp~~v~~FL~~~~N~~~l~GVigSGNrNfg~~f~~aa~~ia~ky~VPll~k 107 (122)
T PF07972_consen 57 VPKQVIRFLENPDNRKLLRGVIGSGNRNFGDNFCLAADKIAEKYGVPLLYK 107 (122)
T ss_dssp S-HHHHHHHHSHHHGGGEEEEEEEE-GGGGGGTTHHHHHHHHHHT--EEEE
T ss_pred CCHHHHHHHHHHHHHhhheeEEecCCcHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 5677888887 5544444 5555555543338889999999999999863
No 351
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=20.62 E-value=1.9e+02 Score=25.14 Aligned_cols=48 Identities=13% Similarity=0.042 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCccccccc-HHHHHHccCCceEEEE
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAM-SHNDISSSFNCRVLAI 134 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs-~a~~vl~~a~~PVLvV 134 (211)
-.+.|.+.++++++|-||.-...--....+.+ ...+.++..++|+|.+
T Consensus 309 R~~~i~~lvke~~aDGVI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L~i 357 (380)
T TIGR02263 309 KGKYLLDQVRKNAAEGVIFAAPSFCDPALLERPMLAARCKEHGIPQIAF 357 (380)
T ss_pred HHHHHHHHHHHhCCCEEEEhHhhcCChhhhhHHHHHHHHHHCCCCEEEE
Confidence 46889999999999999998876544433444 3345568899999999
No 352
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=20.61 E-value=1.7e+02 Score=25.48 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHhCCCEEEEecCCCCc
Q 028280 84 GDQEGARIAALVREIGASALVVGLHDRSF 112 (211)
Q Consensus 84 G~~~~~~I~~~a~~~~adLIVmG~~~~~~ 112 (211)
|+|+...+-+..++.++.+|.+-+.+-.+
T Consensus 103 GdDi~~v~~~~~~~~~~~vi~v~t~gf~g 131 (406)
T cd01967 103 GDDIEAVAKEASKELGIPVIPVNCEGFRG 131 (406)
T ss_pred ccCHHHHHHHHHHhhCCCEEEEeCCCeeC
Confidence 66454444444445667777777665433
No 353
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=20.59 E-value=4.7e+02 Score=21.30 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=8.0
Q ss_pred HHHHHHHhCCCEEEEec
Q 028280 91 IAALVREIGASALVVGL 107 (211)
Q Consensus 91 I~~~a~~~~adLIVmG~ 107 (211)
|++.+.+.++|+|++|-
T Consensus 149 i~~~I~~s~~dil~Vgl 165 (243)
T PRK03692 149 LFERIHASGAKIVTVAM 165 (243)
T ss_pred HHHHHHhcCCCEEEEEC
Confidence 44444444444444443
No 354
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=20.51 E-value=3.2e+02 Score=19.23 Aligned_cols=76 Identities=20% Similarity=0.251 Sum_probs=43.3
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v 81 (211)
|+|+|||+=-+-- | ..+++-++..|-+..+++..+..... ....+++ ...
T Consensus 1 ~ikkvLIanrGei----a-~r~~ra~r~~Gi~tv~v~s~~d~~s~------------------~~~~ad~-------~~~ 50 (110)
T PF00289_consen 1 MIKKVLIANRGEI----A-VRIIRALRELGIETVAVNSNPDTVST------------------HVDMADE-------AYF 50 (110)
T ss_dssp SSSEEEESS-HHH----H-HHHHHHHHHTTSEEEEEEEGGGTTGH------------------HHHHSSE-------EEE
T ss_pred CCCEEEEECCCHH----H-HHHHHHHHHhCCcceeccCchhcccc------------------ccccccc-------cee
Confidence 6889998743322 2 23455555678888888887643221 1111111 111
Q ss_pred ee-CC-----CHHHHHHHHHHHhCCCEEEEec
Q 028280 82 TE-GD-----QEGARIAALVREIGASALVVGL 107 (211)
Q Consensus 82 ~~-G~-----~~~~~I~~~a~~~~adLIVmG~ 107 (211)
.. +. --.+.|++.+++.++|.+.=|.
T Consensus 51 ~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGy 82 (110)
T PF00289_consen 51 EPPGPSPESYLNIEAIIDIARKEGADAIHPGY 82 (110)
T ss_dssp EESSSGGGTTTSHHHHHHHHHHTTESEEESTS
T ss_pred cCcchhhhhhccHHHHhhHhhhhcCccccccc
Confidence 22 11 1368999999999888876553
No 355
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=20.43 E-value=4.4e+02 Score=20.90 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=47.8
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (211)
|..-++.|+.|..... .|+++ ++.....+..+-|..+ ..-..+-...+.+++. +++..+-..
T Consensus 1 ~~~~~l~vALD~~~~~-~a~~l----~~~l~~~v~~~kvG~~----------l~~~~G~~~i~~lk~~---~~~~~v~~D 62 (216)
T PRK13306 1 MSKPLLQIALDNQDLE-SAIED----AKKVAEEVDIIEVGTI----------LLLAEGMKAVRVLRAL---YPDKIIVAD 62 (216)
T ss_pred CCCCcEEEEecCCCHH-HHHHH----HHHccccCCEEEEChH----------HHHHhCHHHHHHHHHH---CCCCEEEEE
Confidence 4445789999976544 45554 4444444444444332 1111122222223333 245555555
Q ss_pred EeeCCCHHHHHHHHHHHhCCCEEEEec
Q 028280 81 VTEGDQEGARIAALVREIGASALVVGL 107 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~~adLIVmG~ 107 (211)
+..-| +...+.+.+.+.++|++.+=.
T Consensus 63 LK~~D-i~~~v~~~~~~~Gad~vTvH~ 88 (216)
T PRK13306 63 TKIAD-AGKILAKMAFEAGADWVTVIC 88 (216)
T ss_pred EeecC-CcHHHHHHHHHCCCCEEEEeC
Confidence 55556 777777667788999887754
No 356
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=20.38 E-value=1.8e+02 Score=25.22 Aligned_cols=54 Identities=4% Similarity=-0.039 Sum_probs=39.8
Q ss_pred eeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc---cccHHHHHHccCC-ceEEEEcC
Q 028280 82 TEGDQEGARIAALVREIGASALVVGLHDRSFLHK---LAMSHNDISSSFN-CRVLAIKQ 136 (211)
Q Consensus 82 ~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~---~gs~a~~vl~~a~-~PVLvV~~ 136 (211)
..-+ -..+|++.|++.+..+|+..+.+...... +......+..+++ +||.+-=.
T Consensus 26 ~n~e-~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaLHLD 83 (347)
T PRK13399 26 NNME-QILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICLHQD 83 (347)
T ss_pred CCHH-HHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEEECC
Confidence 3444 78999999999999999999876432222 5556777887885 89887543
No 357
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=20.21 E-value=1.7e+02 Score=21.23 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.-.+.+.+.++++|.||++.-|.+. ...++...+-|+....
T Consensus 54 G~~~a~~l~~~gvdvvi~~~iG~~a--------~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 54 GIRIAELLVDEGVDVVIASNIGPNA--------YNALKAAGIKVYVAPG 94 (121)
T ss_pred hHHHHHHHHHcCCCEEEECccCHHH--------HHHHHHcCcEEEecCC
Confidence 3458899999999999998755554 4688999999998876
No 358
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=20.17 E-value=3e+02 Score=23.82 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhCCCEEE-Eec
Q 028280 88 GARIAALVREIGASALV-VGL 107 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIV-mG~ 107 (211)
.+.+++.+++.++|.|| +|.
T Consensus 75 v~~~~~~~~~~~~D~IiaiGG 95 (379)
T TIGR02638 75 VKAGVAAFKASGADYLIAIGG 95 (379)
T ss_pred HHHHHHHHHhcCCCEEEEeCC
Confidence 45577778888999988 664
No 359
>PRK08417 dihydroorotase; Provisional
Probab=20.15 E-value=2.2e+02 Score=24.76 Aligned_cols=27 Identities=4% Similarity=-0.148 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 16 ARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 16 s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
...++..++.+|...++++++.|+...
T Consensus 180 E~~~v~~~~~la~~~~~~lhi~hvS~~ 206 (386)
T PRK08417 180 ETKEVAKMKELAKFYKNKVLFDTLALP 206 (386)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCH
Confidence 355799999999999999999999864
No 360
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=20.02 E-value=4e+02 Score=22.03 Aligned_cols=25 Identities=16% Similarity=-0.081 Sum_probs=11.1
Q ss_pred EEecCCHHHHHHHHHHHHhhccCCC
Q 028280 8 VIVEDVDAARAALLWALQNLLRFGD 32 (211)
Q Consensus 8 v~vD~s~~s~~al~~A~~la~~~~a 32 (211)
+++|...........-..+.+....
T Consensus 15 ~~v~~~~~~~~~~~i~~~~~~~~~~ 39 (253)
T COG1922 15 LPVDNVTWDEAVALILGRIEQGKPT 39 (253)
T ss_pred ceeecCCHHHHHHHHHHHHhcCCcc
Confidence 4555555444444443344333333
Done!