Query 028280
Match_columns 211
No_of_seqs 191 out of 1779
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 14:47:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 100.0 3.5E-27 1.2E-31 175.9 16.5 133 1-135 3-146 (146)
2 3fg9_A Protein of universal st 99.9 5.1E-26 1.7E-30 171.8 17.6 133 1-135 13-156 (156)
3 1mjh_A Protein (ATP-binding do 99.9 8.3E-26 2.8E-30 171.5 18.0 135 1-137 3-160 (162)
4 2dum_A Hypothetical protein PH 99.9 1.4E-25 4.9E-30 171.6 17.6 137 1-139 3-159 (170)
5 3dlo_A Universal stress protei 99.9 9.5E-26 3.3E-30 170.9 16.3 129 1-135 22-155 (155)
6 3hgm_A Universal stress protei 99.9 3.7E-26 1.3E-30 170.3 13.5 131 2-134 1-147 (147)
7 3tnj_A Universal stress protei 99.9 4.1E-26 1.4E-30 170.9 12.4 135 1-137 4-148 (150)
8 2z08_A Universal stress protei 99.9 1.1E-25 3.9E-30 166.4 14.2 132 2-135 1-137 (137)
9 3idf_A USP-like protein; unive 99.9 5.4E-25 1.8E-29 162.6 15.4 129 3-135 1-138 (138)
10 1tq8_A Hypothetical protein RV 99.9 4E-25 1.4E-29 168.8 14.0 135 1-138 15-160 (163)
11 1jmv_A USPA, universal stress 99.9 6.5E-25 2.2E-29 162.8 11.6 133 2-137 1-139 (141)
12 3fdx_A Putative filament prote 99.9 2.2E-24 7.4E-29 160.1 13.5 131 3-135 1-143 (143)
13 2gm3_A Unknown protein; AT3G01 99.9 7E-24 2.4E-28 163.0 15.0 137 2-140 4-167 (175)
14 3olq_A Universal stress protei 99.9 2E-23 7E-28 174.4 15.8 173 1-179 5-207 (319)
15 3cis_A Uncharacterized protein 99.9 5E-23 1.7E-27 171.8 16.8 173 1-176 17-210 (309)
16 3loq_A Universal stress protei 99.9 1.4E-23 4.6E-28 174.0 11.8 169 1-175 20-208 (294)
17 1q77_A Hypothetical protein AQ 99.9 1.3E-22 4.5E-27 149.8 12.2 125 1-135 2-138 (138)
18 3mt0_A Uncharacterized protein 99.9 8.2E-23 2.8E-27 169.1 11.7 158 1-177 5-181 (290)
19 3ab8_A Putative uncharacterize 99.9 2.5E-22 8.5E-27 164.0 13.8 144 4-156 1-164 (268)
20 3mt0_A Uncharacterized protein 99.9 1.2E-21 4.2E-26 162.0 15.4 134 2-137 133-277 (290)
21 3olq_A Universal stress protei 99.9 8.6E-21 2.9E-25 158.4 15.3 136 2-138 155-307 (319)
22 3cis_A Uncharacterized protein 99.9 1.5E-20 5E-25 156.8 15.9 133 2-137 170-307 (309)
23 3loq_A Universal stress protei 99.8 2.5E-20 8.4E-25 154.3 15.1 122 2-138 169-292 (294)
24 3ab8_A Putative uncharacterize 99.8 8.3E-18 2.8E-22 137.1 12.5 114 2-135 153-268 (268)
25 2iel_A Hypothetical protein TT 96.1 0.23 7.9E-06 35.8 13.4 128 3-134 1-133 (138)
26 1wy5_A TILS, hypothetical UPF0 94.0 1 3.5E-05 36.9 12.4 96 4-111 25-137 (317)
27 3a2k_A TRNA(Ile)-lysidine synt 93.8 0.69 2.4E-05 40.1 11.5 98 4-112 19-132 (464)
28 3g40_A Na-K-CL cotransporter; 93.0 2.6 8.7E-05 34.3 12.7 124 5-141 22-151 (294)
29 3ih5_A Electron transfer flavo 92.0 1.5 5.2E-05 34.0 10.0 88 2-109 2-101 (217)
30 1efv_B Electron transfer flavo 91.7 4.2 0.00014 32.3 12.6 98 13-132 39-147 (255)
31 1o97_C Electron transferring f 91.5 2.5 8.6E-05 33.8 11.0 102 10-132 33-143 (264)
32 2xry_A Deoxyribodipyrimidine p 91.4 1 3.6E-05 39.2 9.4 112 15-137 50-162 (482)
33 1efp_B ETF, protein (electron 91.4 4.4 0.00015 32.1 12.3 99 12-132 35-144 (252)
34 3g40_A Na-K-CL cotransporter; 89.3 1 3.5E-05 36.6 6.8 106 15-141 177-282 (294)
35 3umv_A Deoxyribodipyrimidine p 88.5 3.1 0.0001 36.6 10.0 122 11-139 47-171 (506)
36 1zun_A Sulfate adenylyltransfe 86.7 4.7 0.00016 33.2 9.5 95 3-111 46-158 (325)
37 3bl5_A Queuosine biosynthesis 86.3 8.9 0.0003 28.9 12.1 38 1-42 1-38 (219)
38 3k32_A Uncharacterized protein 84.8 7.1 0.00024 29.6 9.2 39 1-43 4-42 (203)
39 2wq7_A RE11660P; lyase-DNA com 84.6 6 0.00021 35.0 9.8 122 11-137 38-162 (543)
40 2ywx_A Phosphoribosylaminoimid 84.4 8.4 0.00029 28.3 8.8 65 65-136 18-82 (157)
41 1iv0_A Hypothetical protein; r 84.4 4 0.00014 27.4 6.7 49 87-136 39-93 (98)
42 2nz2_A Argininosuccinate synth 84.2 12 0.0004 31.9 11.1 89 2-110 4-122 (413)
43 4grd_A N5-CAIR mutase, phospho 83.7 7.5 0.00026 29.0 8.4 64 66-136 32-98 (173)
44 4b4k_A N5-carboxyaminoimidazol 83.7 9.4 0.00032 28.7 9.0 66 65-137 41-109 (181)
45 3p9x_A Phosphoribosylglycinami 82.1 12 0.0004 28.9 9.4 105 3-136 2-111 (211)
46 3kuu_A Phosphoribosylaminoimid 81.7 12 0.0004 28.0 8.8 66 65-137 31-99 (174)
47 1xmp_A PURE, phosphoribosylami 81.7 13 0.00044 27.7 9.0 66 65-137 30-98 (170)
48 4ds3_A Phosphoribosylglycinami 81.5 11 0.00036 29.1 9.0 109 1-137 5-117 (209)
49 3trh_A Phosphoribosylaminoimid 80.7 11 0.00036 28.1 8.2 66 65-137 25-93 (169)
50 3lp6_A Phosphoribosylaminoimid 79.6 14 0.00048 27.6 8.6 66 65-137 26-94 (174)
51 3oow_A Phosphoribosylaminoimid 79.2 17 0.00058 26.9 9.0 66 65-137 24-92 (166)
52 3ors_A N5-carboxyaminoimidazol 79.1 15 0.00053 27.0 8.6 66 65-137 22-90 (163)
53 1u11_A PURE (N5-carboxyaminoim 78.8 15 0.00051 27.6 8.6 66 65-137 40-108 (182)
54 3rg8_A Phosphoribosylaminoimid 78.6 13 0.00045 27.3 8.2 66 65-137 21-90 (159)
55 1np7_A DNA photolyase; protein 78.1 24 0.00082 30.5 11.2 121 5-138 7-139 (489)
56 1k92_A Argininosuccinate synth 78.0 33 0.0011 29.6 11.8 37 3-43 10-46 (455)
57 3tvs_A Cryptochrome-1; circadi 77.8 4.5 0.00015 35.8 6.4 119 15-136 17-136 (538)
58 1ni5_A Putative cell cycle pro 77.8 16 0.00055 31.2 9.8 95 3-111 13-120 (433)
59 3da8_A Probable 5'-phosphoribo 76.0 11 0.00038 29.1 7.5 105 2-136 11-119 (215)
60 1o4v_A Phosphoribosylaminoimid 74.2 23 0.00078 26.6 8.5 67 65-138 32-101 (183)
61 2j4d_A Cryptochrome 3, cryptoc 73.3 8.1 0.00028 34.0 6.9 114 11-137 49-175 (525)
62 1sur_A PAPS reductase; assimil 72.0 29 0.00099 26.1 10.2 90 4-111 45-159 (215)
63 2ywb_A GMP synthase [glutamine 71.8 46 0.0016 28.9 11.4 88 4-109 210-318 (503)
64 3kcq_A Phosphoribosylglycinami 71.7 26 0.0009 26.9 8.7 105 3-136 8-112 (215)
65 2hma_A Probable tRNA (5-methyl 71.2 29 0.001 28.9 9.6 97 3-109 9-133 (376)
66 1nu0_A Hypothetical protein YQ 71.2 4.4 0.00015 29.1 3.9 51 87-137 41-97 (138)
67 2oq2_A Phosphoadenosine phosph 71.1 35 0.0012 26.7 9.8 39 3-42 41-79 (261)
68 2ywr_A Phosphoribosylglycinami 69.9 35 0.0012 26.1 10.8 105 4-136 2-110 (216)
69 1owl_A Photolyase, deoxyribodi 68.5 23 0.00078 30.7 8.6 114 11-137 12-130 (484)
70 1ccw_A Protein (glutamate muta 68.1 28 0.00097 24.4 8.6 49 87-135 42-92 (137)
71 2pg3_A Queuosine biosynthesis 67.9 38 0.0013 25.8 12.3 37 2-42 1-37 (232)
72 1kor_A Argininosuccinate synth 67.6 55 0.0019 27.6 10.6 37 4-43 1-37 (400)
73 2j07_A Deoxyribodipyrimidine p 67.1 7 0.00024 33.3 4.9 113 11-138 11-123 (420)
74 1g63_A Epidermin modifying enz 66.4 4.7 0.00016 30.3 3.3 110 2-136 1-115 (181)
75 3ouz_A Biotin carboxylase; str 65.9 26 0.00089 29.6 8.4 36 1-41 4-39 (446)
76 1q6o_A Humps, 3-keto-L-gulonat 65.6 26 0.0009 26.5 7.6 89 1-108 1-89 (216)
77 3exr_A RMPD (hexulose-6-phosph 65.4 23 0.0008 27.2 7.3 85 3-106 5-89 (221)
78 3fy4_A 6-4 photolyase; DNA rep 64.2 11 0.00036 33.4 5.6 123 1-136 1-140 (537)
79 1u3d_A Cryptochrome 1 apoprote 63.9 51 0.0017 28.6 10.0 115 11-137 21-139 (509)
80 2c5s_A THII, probable thiamine 63.0 55 0.0019 27.6 9.8 35 3-41 187-221 (413)
81 2e0i_A 432AA long hypothetical 63.0 18 0.00063 30.9 6.8 111 12-137 11-127 (440)
82 2yxb_A Coenzyme B12-dependent 62.2 11 0.00038 27.5 4.6 54 82-135 52-107 (161)
83 2wsi_A FAD synthetase; transfe 61.0 50 0.0017 26.6 8.9 96 4-113 54-171 (306)
84 2dpl_A GMP synthetase, GMP syn 60.8 64 0.0022 26.0 10.5 95 4-114 21-135 (308)
85 3tqr_A Phosphoribosylglycinami 60.8 54 0.0019 25.1 8.7 104 4-136 6-113 (215)
86 3qjg_A Epidermin biosynthesis 59.2 9.8 0.00033 28.4 3.9 110 1-135 3-117 (175)
87 1qv9_A F420-dependent methylen 59.2 20 0.00067 28.4 5.6 47 89-137 54-100 (283)
88 1dnp_A DNA photolyase; DNA rep 59.0 19 0.00065 31.1 6.3 109 17-137 16-131 (471)
89 3o1l_A Formyltetrahydrofolate 58.0 74 0.0025 25.8 9.6 104 3-136 105-211 (302)
90 1vhx_A Putative holliday junct 57.5 5.2 0.00018 29.1 2.1 53 87-139 43-101 (150)
91 2ejb_A Probable aromatic acid 57.3 16 0.00055 27.5 4.9 118 3-136 1-126 (189)
92 1y80_A Predicted cobalamin bin 56.5 20 0.0007 27.0 5.5 52 85-136 125-179 (210)
93 1vl2_A Argininosuccinate synth 56.1 95 0.0032 26.4 10.7 37 2-42 13-49 (421)
94 3jr2_A Hexulose-6-phosphate sy 56.0 40 0.0014 25.5 7.1 89 1-108 4-92 (218)
95 3tqi_A GMP synthase [glutamine 55.8 24 0.00082 30.9 6.4 90 4-109 231-340 (527)
96 1vbk_A Hypothetical protein PH 54.7 83 0.0028 25.3 10.3 86 4-109 180-265 (307)
97 3m47_A Orotidine 5'-phosphate 53.9 67 0.0023 24.6 8.1 34 3-41 12-45 (228)
98 3lou_A Formyltetrahydrofolate 53.7 85 0.0029 25.2 10.2 104 3-136 95-201 (292)
99 3n0v_A Formyltetrahydrofolate 53.0 86 0.003 25.1 10.2 104 3-136 90-196 (286)
100 3nbm_A PTS system, lactose-spe 52.4 22 0.00076 24.1 4.5 60 65-136 26-86 (108)
101 2h31_A Multifunctional protein 52.2 67 0.0023 27.4 8.4 66 65-137 284-353 (425)
102 2der_A TRNA-specific 2-thiouri 51.9 1E+02 0.0035 25.6 10.1 97 3-109 17-142 (380)
103 1meo_A Phosophoribosylglycinam 50.9 79 0.0027 24.0 10.3 106 4-137 1-110 (209)
104 3qw4_B UMP synthase; N-termina 47.3 74 0.0025 27.3 8.0 93 4-107 15-113 (453)
105 3auf_A Glycinamide ribonucleot 47.2 96 0.0033 23.9 10.9 106 3-136 22-131 (229)
106 3av3_A Phosphoribosylglycinami 46.6 93 0.0032 23.6 10.8 107 3-137 3-113 (212)
107 3zqu_A Probable aromatic acid 46.1 29 0.001 26.5 4.8 36 2-38 3-38 (209)
108 3obi_A Formyltetrahydrofolate 45.2 73 0.0025 25.5 7.3 104 3-136 89-196 (288)
109 3tqq_A Methionyl-tRNA formyltr 45.2 1.2E+02 0.0039 24.6 8.6 42 65-110 50-91 (314)
110 2l69_A Rossmann 2X3 fold prote 45.0 13 0.00044 24.8 2.2 65 64-134 17-81 (134)
111 3rjz_A N-type ATP pyrophosphat 44.6 1E+02 0.0035 23.9 7.9 94 4-109 5-100 (237)
112 2i2x_B MTAC, methyltransferase 44.6 39 0.0013 26.5 5.5 61 74-136 151-212 (258)
113 2q5c_A NTRC family transcripti 44.4 96 0.0033 23.1 9.0 49 78-137 30-79 (196)
114 3ecs_A Translation initiation 43.8 1.1E+02 0.0038 24.9 8.2 56 74-137 172-232 (315)
115 3iv3_A Tagatose 1,6-diphosphat 43.3 1.4E+02 0.0047 24.6 12.6 113 19-137 111-254 (332)
116 3ldv_A Orotidine 5'-phosphate 43.0 1.2E+02 0.0041 23.8 9.8 86 1-107 25-113 (255)
117 2qv7_A Diacylglycerol kinase D 41.0 1.1E+02 0.0038 24.6 8.0 68 65-137 47-115 (337)
118 2a5l_A Trp repressor binding p 40.6 33 0.0011 25.1 4.3 41 1-41 3-44 (200)
119 3dzc_A UDP-N-acetylglucosamine 40.4 1.1E+02 0.0038 25.2 8.0 40 1-40 23-62 (396)
120 2a0u_A Initiation factor 2B; S 39.7 1.7E+02 0.0057 24.5 9.8 57 74-136 237-298 (383)
121 1w0d_A 3-isopropylmalate dehyd 39.7 58 0.002 26.9 5.9 79 14-107 154-232 (337)
122 1jq5_A Glycerol dehydrogenase; 39.6 80 0.0027 25.9 6.9 65 64-136 49-118 (370)
123 2pju_A Propionate catabolism o 39.5 1.3E+02 0.0043 23.1 8.9 61 65-137 28-91 (225)
124 3ajx_A 3-hexulose-6-phosphate 39.4 86 0.0029 23.1 6.6 84 5-107 2-85 (207)
125 3glc_A Aldolase LSRF; TIM barr 38.7 1.5E+02 0.0052 23.8 9.2 96 23-136 130-231 (295)
126 3nrb_A Formyltetrahydrofolate 38.5 96 0.0033 24.8 7.0 105 3-136 88-195 (287)
127 1w2w_B 5-methylthioribose-1-ph 37.8 23 0.00077 26.8 2.9 57 74-136 30-93 (191)
128 2o8v_A Phosphoadenosine phosph 37.7 1.4E+02 0.0047 23.0 9.1 35 4-42 46-80 (252)
129 2qjg_A Putative aldolase MJ040 35.7 1.5E+02 0.0051 22.9 9.2 68 62-136 134-210 (273)
130 3qw3_A Orotidine-5-phosphate d 35.4 85 0.0029 24.6 6.1 93 4-107 14-112 (255)
131 2pju_A Propionate catabolism o 34.6 1.5E+02 0.0053 22.6 8.7 85 20-135 95-179 (225)
132 1e2b_A Enzyme IIB-cellobiose; 34.2 49 0.0017 22.1 4.0 40 1-40 1-40 (106)
133 3d0c_A Dihydrodipicolinate syn 34.2 1.8E+02 0.0062 23.3 9.1 60 74-135 81-144 (314)
134 1t5o_A EIF2BD, translation ini 34.0 77 0.0026 26.2 5.8 57 74-136 206-266 (351)
135 3ezx_A MMCP 1, monomethylamine 33.8 40 0.0014 25.7 3.8 49 87-135 131-184 (215)
136 2l69_A Rossmann 2X3 fold prote 33.7 73 0.0025 21.1 4.5 46 62-108 39-84 (134)
137 2q5c_A NTRC family transcripti 33.4 1.5E+02 0.005 22.0 11.4 86 20-136 83-168 (196)
138 2y3z_A 3-isopropylmalate dehyd 33.3 84 0.0029 26.2 5.9 78 14-107 163-240 (359)
139 3vk5_A MOEO5; TIM barrel, tran 33.1 47 0.0016 26.8 4.2 45 91-135 58-104 (286)
140 3s40_A Diacylglycerol kinase; 33.0 1.8E+02 0.0062 23.0 8.6 67 65-137 31-98 (304)
141 1vlc_A 3-isopropylmalate dehyd 33.0 85 0.0029 26.2 5.9 77 14-106 174-250 (366)
142 1o97_D Electron transferring f 32.5 2E+02 0.0068 23.3 9.1 102 5-132 2-115 (320)
143 1qzu_A Hypothetical protein MD 32.4 32 0.0011 26.2 3.0 36 3-38 19-54 (206)
144 1sbz_A Probable aromatic acid 32.1 64 0.0022 24.4 4.7 35 4-38 1-35 (197)
145 1cnz_A IPMDH, IMDH, protein (3 31.0 96 0.0033 25.8 5.9 78 14-107 170-247 (363)
146 1p3y_1 MRSD protein; flavoprot 30.6 33 0.0011 25.9 2.8 111 3-136 8-123 (194)
147 2bon_A Lipid kinase; DAG kinas 30.6 2.1E+02 0.0071 22.9 9.0 68 65-137 49-119 (332)
148 2au3_A DNA primase; zinc ribbo 30.4 2E+02 0.0068 24.0 8.0 34 4-37 288-321 (407)
149 1a05_A IPMDH, IMDH, 3-isopropy 30.3 1.1E+02 0.0036 25.5 6.1 78 14-107 165-242 (358)
150 3u1h_A 3-isopropylmalate dehyd 29.6 1E+02 0.0036 25.9 5.9 78 14-107 186-263 (390)
151 3dff_A Teicoplanin pseudoaglyc 29.4 2E+02 0.007 22.5 10.7 47 87-134 136-185 (273)
152 1jkx_A GART;, phosphoribosylgl 29.2 1.8E+02 0.0063 21.9 11.1 106 4-137 1-110 (212)
153 2vc6_A MOSA, dihydrodipicolina 28.8 2.2E+02 0.0074 22.5 8.7 62 74-136 69-134 (292)
154 2v9d_A YAGE; dihydrodipicolini 28.8 2.4E+02 0.0081 23.0 9.1 51 86-136 111-165 (343)
155 2yvk_A Methylthioribose-1-phos 28.7 67 0.0023 26.9 4.6 57 74-136 233-294 (374)
156 2r8w_A AGR_C_1641P; APC7498, d 28.6 2.3E+02 0.008 22.9 9.3 51 86-136 114-168 (332)
157 1o5k_A DHDPS, dihydrodipicolin 28.6 2.2E+02 0.0077 22.6 9.3 50 87-136 93-146 (306)
158 4dbe_A Orotidine 5'-phosphate 28.1 63 0.0021 24.8 4.1 22 1-26 1-22 (222)
159 3udu_A 3-isopropylmalate dehyd 27.7 1.1E+02 0.0039 25.4 5.8 78 14-107 167-244 (361)
160 3r8w_A 3-isopropylmalate dehyd 27.5 1.3E+02 0.0043 25.5 6.1 78 14-107 207-284 (405)
161 1t9k_A Probable methylthioribo 27.4 66 0.0022 26.6 4.3 57 74-136 208-269 (347)
162 2ojp_A DHDPS, dihydrodipicolin 27.3 2.3E+02 0.0079 22.4 7.7 50 87-136 82-135 (292)
163 1nmo_A Hypothetical protein YB 27.1 61 0.0021 25.3 3.9 32 3-41 35-66 (247)
164 1gpm_A GMP synthetase, XMP ami 27.1 3.1E+02 0.011 23.7 9.5 37 3-42 227-263 (525)
165 1xw8_A UPF0271 protein YBGL; N 27.0 2.3E+02 0.0079 22.3 8.0 107 17-133 37-157 (252)
166 1xky_A Dihydrodipicolinate syn 27.0 2.4E+02 0.0081 22.4 9.2 50 87-136 93-146 (301)
167 1f6k_A N-acetylneuraminate lya 27.0 2.3E+02 0.008 22.3 8.2 59 78-136 75-138 (293)
168 3flk_A Tartrate dehydrogenase/ 27.0 82 0.0028 26.3 4.8 79 14-107 166-245 (364)
169 2dzd_A Pyruvate carboxylase; b 27.0 1.3E+02 0.0046 25.1 6.4 35 1-40 4-38 (461)
170 2rfg_A Dihydrodipicolinate syn 26.9 2.4E+02 0.0081 22.4 8.6 51 86-136 80-134 (297)
171 2f6u_A GGGPS, (S)-3-O-geranylg 26.8 68 0.0023 24.9 4.1 48 88-136 22-69 (234)
172 2a9o_A Response regulator; ess 26.8 1.2E+02 0.0042 19.1 5.5 48 87-137 34-81 (120)
173 3gxq_A Putative regulator of t 26.7 67 0.0023 18.0 2.9 27 76-102 11-37 (54)
174 3nhm_A Response regulator; pro 26.6 1.3E+02 0.0043 19.5 5.2 48 89-138 37-87 (133)
175 3lqk_A Dipicolinate synthase s 26.3 59 0.002 24.6 3.6 35 3-38 7-42 (201)
176 3vmk_A 3-isopropylmalate dehyd 26.3 1.3E+02 0.0044 25.2 5.9 78 14-107 179-256 (375)
177 4edg_A DNA primase; catalytic 26.2 1.8E+02 0.0061 23.7 6.7 34 4-37 196-229 (329)
178 1x0l_A Homoisocitrate dehydrog 26.2 99 0.0034 25.4 5.1 79 14-107 144-223 (333)
179 2ehh_A DHDPS, dihydrodipicolin 26.1 2.4E+02 0.0083 22.2 8.9 59 78-136 71-134 (294)
180 2yxg_A DHDPS, dihydrodipicolin 26.0 2.4E+02 0.0083 22.2 8.8 59 78-136 71-134 (289)
181 3e96_A Dihydrodipicolinate syn 25.9 2.6E+02 0.0087 22.4 8.5 61 74-136 81-145 (316)
182 2yyb_A Hypothetical protein TT 25.9 58 0.002 25.3 3.6 31 3-40 36-66 (242)
183 2wkj_A N-acetylneuraminate lya 25.7 2.5E+02 0.0087 22.3 8.1 60 77-136 81-146 (303)
184 3a5f_A Dihydrodipicolinate syn 25.6 2.3E+02 0.008 22.3 7.3 50 87-136 82-135 (291)
185 3cpr_A Dihydrodipicolinate syn 25.5 2.6E+02 0.0087 22.3 8.9 58 79-136 88-150 (304)
186 3grc_A Sensor protein, kinase; 25.4 1.5E+02 0.005 19.5 7.7 47 88-136 39-88 (140)
187 2dfa_A Hypothetical UPF0271 pr 25.3 2.1E+02 0.0072 22.5 6.6 116 8-133 33-162 (250)
188 3r7f_A Aspartate carbamoyltran 25.2 88 0.003 25.3 4.6 42 83-132 77-118 (304)
189 3f6p_A Transcriptional regulat 25.2 1.4E+02 0.0048 19.1 8.7 48 88-137 35-82 (120)
190 2l2q_A PTS system, cellobiose- 25.0 1.5E+02 0.0052 19.5 6.8 61 65-136 24-84 (109)
191 3na8_A Putative dihydrodipicol 24.9 2.7E+02 0.0092 22.3 8.6 62 74-136 93-158 (315)
192 1v6t_A Hypothetical UPF0271 pr 24.8 2.6E+02 0.0087 22.1 7.6 116 8-133 33-162 (255)
193 1xrs_B D-lysine 5,6-aminomutas 24.7 1.6E+02 0.0055 23.2 6.0 48 86-134 167-221 (262)
194 3o3m_B Beta subunit 2-hydroxya 24.6 82 0.0028 26.2 4.5 50 87-136 301-351 (385)
195 3n53_A Response regulator rece 24.5 1.5E+02 0.0053 19.4 6.0 47 89-137 36-85 (140)
196 1mvl_A PPC decarboxylase athal 24.5 78 0.0027 24.1 4.0 35 2-38 18-52 (209)
197 3to5_A CHEY homolog; alpha(5)b 23.9 1.3E+02 0.0044 20.7 4.8 45 89-137 47-96 (134)
198 3d6n_B Aspartate carbamoyltran 23.8 1.3E+02 0.0044 24.2 5.3 106 4-133 2-118 (291)
199 3l21_A DHDPS, dihydrodipicolin 23.8 2.8E+02 0.0095 22.1 9.2 50 87-136 96-149 (304)
200 3blx_A Isocitrate dehydrogenas 23.6 1.2E+02 0.0041 25.1 5.2 79 14-107 157-237 (349)
201 2hy5_B Intracellular sulfur ox 23.6 1.6E+02 0.0056 20.4 5.3 39 2-41 4-46 (136)
202 1jx7_A Hypothetical protein YC 23.4 1.5E+02 0.0051 19.3 5.0 39 3-41 1-44 (117)
203 3p0r_A Azoreductase; structura 23.1 55 0.0019 24.6 2.9 27 16-42 22-50 (211)
204 2fyw_A Conserved hypothetical 22.9 54 0.0018 25.9 2.9 29 3-38 38-66 (267)
205 2zki_A 199AA long hypothetical 22.8 99 0.0034 22.4 4.3 40 3-42 4-43 (199)
206 3rxy_A NIF3 protein; structura 22.5 59 0.002 26.0 2.9 31 2-39 37-67 (278)
207 1dd9_A DNA primase, DNAG; topr 22.3 3.2E+02 0.011 22.2 9.3 36 3-38 206-244 (338)
208 3eb2_A Putative dihydrodipicol 22.3 2.9E+02 0.01 21.8 9.5 63 74-137 73-139 (300)
209 1mb3_A Cell division response 22.2 1.5E+02 0.0052 18.8 4.8 47 87-137 34-84 (124)
210 3mcu_A Dipicolinate synthase, 22.2 77 0.0026 24.1 3.5 116 3-136 5-129 (207)
211 2zay_A Response regulator rece 22.1 1.8E+02 0.0061 19.2 6.5 48 88-137 41-91 (147)
212 2qzj_A Two-component response 22.1 1.4E+02 0.0049 19.6 4.8 46 89-136 38-83 (136)
213 3u9t_A MCC alpha, methylcroton 22.0 2.4E+02 0.0081 25.4 7.3 34 1-39 26-59 (675)
214 3l52_A Orotidine 5'-phosphate 21.8 3.1E+02 0.01 21.9 9.3 92 5-105 24-132 (284)
215 1gte_A Dihydropyrimidine dehyd 21.8 4.3E+02 0.015 24.9 9.3 83 22-105 652-734 (1025)
216 1y5e_A Molybdenum cofactor bio 21.7 2.1E+02 0.0073 20.5 5.9 40 65-106 36-79 (169)
217 3tfx_A Orotidine 5'-phosphate 21.7 2.9E+02 0.01 21.6 8.0 83 4-107 5-91 (259)
218 3cnb_A DNA-binding response re 21.6 1.8E+02 0.006 19.0 7.8 48 88-137 43-93 (143)
219 1m06_J J protein, small core p 21.6 41 0.0014 16.3 1.2 10 199-208 4-13 (26)
220 3bul_A Methionine synthase; tr 21.5 1.1E+02 0.0037 27.3 4.8 51 86-136 136-187 (579)
221 1req_A Methylmalonyl-COA mutas 21.2 1.4E+02 0.0047 27.5 5.4 49 84-133 632-683 (727)
222 1s8n_A Putative antiterminator 21.0 2E+02 0.007 20.5 5.7 46 89-136 48-93 (205)
223 1x7f_A Outer surface protein; 20.9 3.3E+02 0.011 22.8 7.4 39 1-39 24-62 (385)
224 3gt7_A Sensor protein; structu 20.7 2E+02 0.0069 19.3 6.9 47 88-137 40-90 (154)
225 3i42_A Response regulator rece 20.7 1.8E+02 0.006 18.6 8.1 50 88-139 36-88 (127)
226 3daq_A DHDPS, dihydrodipicolin 20.5 3.2E+02 0.011 21.5 8.3 62 74-136 71-136 (292)
227 3qze_A DHDPS, dihydrodipicolin 20.5 3.3E+02 0.011 21.8 8.9 50 87-136 104-157 (314)
228 3o1i_D Periplasmic protein TOR 20.3 2.8E+02 0.0097 20.9 7.6 66 63-135 25-94 (304)
229 3kht_A Response regulator; PSI 20.3 1.9E+02 0.0066 19.0 7.3 47 88-137 40-90 (144)
230 1vhn_A Putative flavin oxidore 20.2 1.9E+02 0.0064 23.1 5.7 87 18-108 71-162 (318)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.95 E-value=3.5e-27 Score=175.92 Aligned_cols=133 Identities=17% Similarity=0.158 Sum_probs=110.2
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccch----H---HHHHHHHHHHHHHHHHHHHHhhhC
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNR----K---KLRLLRLKGYQLALSFKDICNDFF 73 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~~~~~~~ 73 (211)
|||++||||+|+|+.+..|++||+.+|...+++|+++||.+....... . ..+..++..++.++.+.+.+.+ .
T Consensus 3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 81 (146)
T 3s3t_A 3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVAT-T 81 (146)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 899999999999999999999999999999999999999987543321 1 1122223333444444444443 3
Q ss_pred CC-cEEEEEeeCCCHHHHHHH-HHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEc
Q 028280 74 NT-NVEIIVTEGDQEGARIAA-LVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 74 ~i-~~~~~v~~G~~~~~~I~~-~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~ 135 (211)
|+ ++++.+..|+ +.++|++ ++++.++||||||+++++.+.+ +||++++|+++++|||||||
T Consensus 82 g~~~~~~~~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV~ 146 (146)
T 3s3t_A 82 SAPNLKTEISYGI-PKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVIR 146 (146)
T ss_dssp SCCCCEEEEEEEC-HHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEEC
T ss_pred CCcceEEEEecCC-hHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEeC
Confidence 78 8999999999 9999999 9999999999999999999887 99999999999999999996
No 2
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.94 E-value=5.1e-26 Score=171.79 Aligned_cols=133 Identities=17% Similarity=0.202 Sum_probs=109.4
Q ss_pred CCCCeEEEEec--CCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc-----chHHHHHHHHHHHHHHHHHHHHHhhhC
Q 028280 1 MDVKKIVVIVE--DVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR-----NRKKLRLLRLKGYQLALSFKDICNDFF 73 (211)
Q Consensus 1 m~~k~ILv~vD--~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~ 73 (211)
|+|++||||+| +|+.+..|++||..+|...+++|+++||++..... .....+...+..++.++.+.+.+.+.
T Consensus 13 ~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 91 (156)
T 3fg9_A 13 LVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQR- 91 (156)
T ss_dssp CCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 78999999999 99999999999999999999999999999875421 11222233334444555555555543
Q ss_pred CC-cEEEEEee-CCCHHHHHHHH-HHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEc
Q 028280 74 NT-NVEIIVTE-GDQEGARIAAL-VREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 74 ~i-~~~~~v~~-G~~~~~~I~~~-a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~ 135 (211)
|+ .+++.+.. |+ +.++|+++ |++.++||||||+++++++.+ +||++++|+++++|||||||
T Consensus 92 g~~~~~~~v~~~g~-~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~~~Gs~~~~vl~~a~~PVlvV~ 156 (156)
T 3fg9_A 92 GVNQVEPLVYEGGD-VDDVILEQVIPEFKPDLLVTGADTEFPHSKIAGAIGPRLARKAPISVIVVR 156 (156)
T ss_dssp TCSSEEEEEEECSC-HHHHHHHTHHHHHCCSEEEEETTCCCTTSSSCSCHHHHHHHHCSSEEEEEC
T ss_pred CCCceEEEEEeCCC-HHHHHHHHHHHhcCCCEEEECCCCCCccceeecchHHHHHHhCCCCEEEeC
Confidence 77 58999999 98 99999999 999999999999999998877 99999999999999999996
No 3
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.94 E-value=8.3e-26 Score=171.51 Aligned_cols=135 Identities=21% Similarity=0.198 Sum_probs=107.8
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC-----C--ccc-------hH-------HHHHHHHHHH
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL-----N--SRN-------RK-------KLRLLRLKGY 59 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~-----~--~~~-------~~-------~~~~~~~~~~ 59 (211)
+||++||||+|+|+.+..|++||..+|...+++|+++||.++. . ... .. ..+...+..+
T Consensus 3 ~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (162)
T 1mjh_A 3 VMYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAK 82 (162)
T ss_dssp CCCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999754 2 110 00 1111122233
Q ss_pred HHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCC
Q 028280 60 QLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 60 ~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+.++.+.+.+.. .|+++++.+..|+ +.++|+++|++.++||||||+++++++.+ +||++++|+++++||||||++.
T Consensus 83 ~~l~~~~~~~~~-~g~~~~~~v~~G~-~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~pVlvv~~~ 160 (162)
T 1mjh_A 83 NKMENIKKELED-VGFKVKDIIVVGI-PHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKRK 160 (162)
T ss_dssp HHHHHHHHHHHH-TTCEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEECCC
T ss_pred HHHHHHHHHHHH-cCCceEEEEcCCC-HHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCCCEEEEeCC
Confidence 334444444443 5889999999999 99999999999999999999999999888 9999999999999999999864
No 4
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.94 E-value=1.4e-25 Score=171.62 Aligned_cols=137 Identities=15% Similarity=0.031 Sum_probs=108.3
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc-c---h------------HHHHHHHHHHHHHHHH
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR-N---R------------KKLRLLRLKGYQLALS 64 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-~---~------------~~~~~~~~~~~~~~~~ 64 (211)
|||++||||+|+|+.+..|++||..+|...+++|+++||.+..... . . ...+...+..++.++.
T Consensus 3 ~m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (170)
T 2dum_A 3 FMFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQE 82 (170)
T ss_dssp -CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHH
T ss_pred cccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999999999764221 0 0 1112223334444444
Q ss_pred HHHHHhhhCCCcEEE--EEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCCCC
Q 028280 65 FKDICNDFFNTNVEI--IVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQPAA 139 (211)
Q Consensus 65 l~~~~~~~~~i~~~~--~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~~~ 139 (211)
+.+.+.. .|+++++ .+..|+ +.++|+++|++.++||||||+++++++.+ +||++++|+++++||||||+....
T Consensus 83 ~~~~~~~-~g~~~~~~~~~~~g~-~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv~~~~~ 159 (170)
T 2dum_A 83 KAEEVKR-AFRAKNVRTIIRFGI-PWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLIIKEVDE 159 (170)
T ss_dssp HHHHHHH-HTTCSEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEECCCCC
T ss_pred HHHHHHH-cCCceeeeeEEecCC-hHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEEccCCc
Confidence 5555443 3888888 888999 99999999999999999999999998877 999999999999999999987543
No 5
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.94 E-value=9.5e-26 Score=170.92 Aligned_cols=129 Identities=23% Similarity=0.193 Sum_probs=107.0
Q ss_pred CCCCeEEEEecC-CHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEE
Q 028280 1 MDVKKIVVIVED-VDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEI 79 (211)
Q Consensus 1 m~~k~ILv~vD~-s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~ 79 (211)
|||++||||+|+ |+.+..|++||+.+|...+++|+++||.+...... +...+..++.++.+.+.+.+ .++++++
T Consensus 22 mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~----~~~~~~~~~~l~~~~~~~~~-~g~~~~~ 96 (155)
T 3dlo_A 22 MIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTK----DEDIIEAKETLSWAVSIIRK-EGAEGEE 96 (155)
T ss_dssp CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSC----HHHHHHHHHHHHHHHHHHHH-TTCCEEE
T ss_pred cccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCccc----HHHHHHHHHHHHHHHHHHHh-cCCCceE
Confidence 899999999999 99999999999999999999999999998654321 22223344445555555554 3666665
Q ss_pred E--EeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEc
Q 028280 80 I--VTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 80 ~--v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~ 135 (211)
. +..|+ +.++|+++|++.++||||||+++++++.+ +||++++|+++++|||||||
T Consensus 97 ~~~v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvVr 155 (155)
T 3dlo_A 97 HLLVRGKE-PPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICIK 155 (155)
T ss_dssp EEEESSSC-HHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEEC
T ss_pred EEEecCCC-HHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEeC
Confidence 4 55688 99999999999999999999999998887 89999999999999999996
No 6
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.94 E-value=3.7e-26 Score=170.32 Aligned_cols=131 Identities=18% Similarity=0.193 Sum_probs=109.0
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc---------c--hHHHHHHHHHHHHHHHHHHHHHh
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR---------N--RKKLRLLRLKGYQLALSFKDICN 70 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~---------~--~~~~~~~~~~~~~~~~~l~~~~~ 70 (211)
||++||||+|+|+.+..|++||+.+|...+++|+++||.+..... . ....+..++..++.++.+.+.+.
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRAT 80 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999864300 0 00112333445555566666665
Q ss_pred hhCCCcE---EEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEE
Q 028280 71 DFFNTNV---EIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 71 ~~~~i~~---~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV 134 (211)
+ .|+++ ++.+..|+ +.++|++++++.++||||||+++++++.+ +||++++|+++++||||||
T Consensus 81 ~-~g~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 81 E-LGVPADKVRAFVKGGR-PSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp H-TTCCGGGEEEEEEESC-HHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred h-cCCCccceEEEEecCC-HHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEEC
Confidence 4 37777 89999998 99999999999999999999999998887 8999999999999999986
No 7
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.94 E-value=4.1e-26 Score=170.93 Aligned_cols=135 Identities=16% Similarity=0.171 Sum_probs=101.2
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc----c----hHHHHHHHHHHHHHHHHHHHHHhhh
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR----N----RKKLRLLRLKGYQLALSFKDICNDF 72 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~----~----~~~~~~~~~~~~~~~~~l~~~~~~~ 72 (211)
|||++||||+|+|+.+..|++||+.+|...+++|+++||.+..... . ....+..++..++..+.+.+++++.
T Consensus 4 ~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (150)
T 3tnj_A 4 SVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTL 83 (150)
T ss_dssp CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 7899999999999999999999999999999999999999864321 0 0000112223334445555555554
Q ss_pred CCCc-EEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcCC
Q 028280 73 FNTN-VEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 73 ~~i~-~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+++ +++.+..|+ +.++|++++++.++||||||+++++.+.. +||++++|+++++||||+||++
T Consensus 84 -~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~~~ 148 (150)
T 3tnj_A 84 -GIDPAHRWLVWGE-PREEIIRIAEQENVDLIVVGSHGRHGLALLLGSTANSVLHYAKCDVLAVRLR 148 (150)
T ss_dssp -TCCGGGEEEEESC-HHHHHHHHHHHTTCSEEEEEEC--------CCCHHHHHHHHCSSEEEEEECC
T ss_pred -CCCcceEEEecCC-HHHHHHHHHHHcCCCEEEEecCCCCCcCeEecchHHHHHHhCCCCEEEEeCC
Confidence 555 577889999 99999999999999999999999887656 8999999999999999999875
No 8
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.93 E-value=1.1e-25 Score=166.35 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=103.4
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCc-cchH-HHHHHHHHHHHHHHHHHHHHhhhCCC-cEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNS-RNRK-KLRLLRLKGYQLALSFKDICNDFFNT-NVE 78 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~-~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~i-~~~ 78 (211)
||++||||+|+|+.+..|++||..+|+..+++|+++||.++... .... ..+..+...++..+.+.++.+. .|+ +++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~~ 79 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARAL-TGVPKED 79 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHH-HCCCGGG
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHH-cCCCccE
Confidence 68999999999999999999999999999999999999975321 1100 0011111222333344444443 477 888
Q ss_pred EEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEc
Q 028280 79 IIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 79 ~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~ 135 (211)
+.+..|+ +.++|++++++.++||||||+++++++.+ +||++++|+++++|||||||
T Consensus 80 ~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 80 ALLLEGV-PAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp EEEEESS-HHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEEC
T ss_pred EEEEecC-HHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEeC
Confidence 8889998 99999999999999999999999998887 99999999999999999996
No 9
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.93 E-value=5.4e-25 Score=162.61 Aligned_cols=129 Identities=22% Similarity=0.338 Sum_probs=106.7
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhh-ccCCCEEEEEEEecCCCccch------HHHHHHH-HHHHHHHHHHHHHHhhhCC
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNL-LRFGDVVTLLHVFPSLNSRNR------KKLRLLR-LKGYQLALSFKDICNDFFN 74 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la-~~~~a~l~llhV~~~~~~~~~------~~~~~~~-~~~~~~~~~l~~~~~~~~~ 74 (211)
|++||||+|+|+.+..|++||..+| +..+++|+++||.+....... ...+..+ +..++.++.+.+.+.+ .|
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~g 79 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTE-KG 79 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TT
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHH-CC
Confidence 7899999999999999999999999 999999999999987654321 1111222 3334444455555543 58
Q ss_pred CcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEc
Q 028280 75 TNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 75 i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~ 135 (211)
+++++.+..|+ +.++|+++++ ++||||||+++++++.+ +||++++|+++++||||+||
T Consensus 80 ~~~~~~v~~g~-~~~~I~~~a~--~~dliV~G~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 80 INPFVVIKEGE-PVEMVLEEAK--DYNLLIIGSSENSFLNKIFASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp CCCEEEEEESC-HHHHHHHHHT--TCSEEEEECCTTSTTSSCCCCTTCHHHHHCSSCEEEEC
T ss_pred CCeEEEEecCC-hHHHHHHHHh--cCCEEEEeCCCcchHHHHhCcHHHHHHhcCCCCEEEeC
Confidence 99999999999 9999999998 99999999999999888 79999999999999999996
No 10
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.93 E-value=4e-25 Score=168.83 Aligned_cols=135 Identities=18% Similarity=0.072 Sum_probs=104.4
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEE--EEecCCCc-cchH-----HHHHHHHHHHHHHHHHHHHHhhh
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLL--HVFPSLNS-RNRK-----KLRLLRLKGYQLALSFKDICNDF 72 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll--hV~~~~~~-~~~~-----~~~~~~~~~~~~~~~l~~~~~~~ 72 (211)
+++++||||+|+|+.+..|++||+.+|. .+++|+++ ||.+.... .... ..+...+..++.++.+.+.+..
T Consensus 15 ~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 92 (163)
T 1tq8_A 15 SAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHN- 92 (163)
T ss_dssp CCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHT-
T ss_pred ccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4689999999999999999999999999 99999999 88765322 1100 0011112233444445555443
Q ss_pred CCCc-EEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCCC
Q 028280 73 FNTN-VEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 73 ~~i~-~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
.+++ +++.+..|+ +.++|+++|++.++||||||+++++.+.+ +||++++|+++++||||||+++.
T Consensus 93 ~gv~~v~~~v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~~~~ 160 (163)
T 1tq8_A 93 AGAKNVEERPIVGA-PVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTTE 160 (163)
T ss_dssp TTCCEEEEEEECSS-HHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECCC-
T ss_pred cCCCeEEEEEecCC-HHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEeCCC
Confidence 4888 999999998 99999999999999999999999999887 99999999999999999998643
No 11
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.92 E-value=6.5e-25 Score=162.76 Aligned_cols=133 Identities=17% Similarity=0.221 Sum_probs=104.1
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCc-c---c-hHHHHHHHHHHHHHHHHHHHHHhhhCCCc
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNS-R---N-RKKLRLLRLKGYQLALSFKDICNDFFNTN 76 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~-~---~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 76 (211)
||++||||+|+|+.+..|++||..+|+..+++|+++||.+..+. . . ....+..+...++..+.+.+++++. |++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 79 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESV-DYP 79 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHS-SSC
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 69999999999999999999999999999999999999954211 1 1 1111111111123344455555543 666
Q ss_pred E-EEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 77 V-EIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 77 ~-~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+ +..+..|+ +.++|+++|++.++||||||++ ++++.++||++++|+++++||||||+.+
T Consensus 80 ~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~-~~~~~~lgs~~~~vl~~~~~pVlvv~~~ 139 (141)
T 1jmv_A 80 ISEKLSGSGD-LGQVLSDAIEQYDVDLLVTGHH-QDFWSKLMSSTRQVMNTIKIDMLVVPLR 139 (141)
T ss_dssp CCCEEEEEEC-HHHHHHHHHHHTTCCEEEEEEC-CCCHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred ceEEEEecCC-HHHHHHHHHHhcCCCEEEEeCC-CchhhhhcchHHHHHhcCCCCEEEeeCC
Confidence 5 56788899 9999999999999999999999 8888779999999999999999999864
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.92 E-value=2.2e-24 Score=160.15 Aligned_cols=131 Identities=19% Similarity=0.241 Sum_probs=106.2
Q ss_pred CCeEEEEecCCHH--HHHHHHHHHHhhccCCCEEEEEEEecCCCccc---h---HHHHHHHHHHHHHHHHHHHHHhhh--
Q 028280 3 VKKIVVIVEDVDA--ARAALLWALQNLLRFGDVVTLLHVFPSLNSRN---R---KKLRLLRLKGYQLALSFKDICNDF-- 72 (211)
Q Consensus 3 ~k~ILv~vD~s~~--s~~al~~A~~la~~~~a~l~llhV~~~~~~~~---~---~~~~~~~~~~~~~~~~l~~~~~~~-- 72 (211)
.|+||||+|+|+. +..|++||..+|...+++|+++||.+...... . ...+..++..++..+.+++++++.
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 80 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSI 80 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 3899999999999 99999999999999999999999998743221 0 011223444556667777777764
Q ss_pred CCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEc
Q 028280 73 FNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 73 ~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~ 135 (211)
+++.+++.+..|+ +.++|++++++.++||||||+++ +++.+ +||++++|+++++|||||||
T Consensus 81 ~~~~v~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 81 PEDRMHFHVAEGS-PKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp CGGGEEEEEEESC-HHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHHHHCSSEEEEEC
T ss_pred CCCceEEEEEecC-hHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHHHhCCCCEEEeC
Confidence 3567899999998 99999999999999999999996 76766 89999999999999999996
No 13
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.91 E-value=7e-24 Score=163.03 Aligned_cols=137 Identities=23% Similarity=0.343 Sum_probs=99.6
Q ss_pred CCCeEEEEecCCH---------HHHHHHHHHHHhhcc---CCCEEEEEEEecCCCc-c--------chHHHHH----HHH
Q 028280 2 DVKKIVVIVEDVD---------AARAALLWALQNLLR---FGDVVTLLHVFPSLNS-R--------NRKKLRL----LRL 56 (211)
Q Consensus 2 ~~k~ILv~vD~s~---------~s~~al~~A~~la~~---~~a~l~llhV~~~~~~-~--------~~~~~~~----~~~ 56 (211)
+|++|||++|+|+ .+..|++||+.++.+ .+++|+++||.+.... . .....+. ..+
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKA 83 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHH
Confidence 5899999999999 999999999998744 5899999999864321 1 0111111 112
Q ss_pred HHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEE
Q 028280 57 KGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 57 ~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV 134 (211)
..++.++.+.+.+.. .|+++++.+..|+ +.++|++++++.++||||||+++++++.+ +||++++|+++++||||||
T Consensus 84 ~~~~~l~~~~~~~~~-~g~~~~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~a~~pVlvv 161 (175)
T 2gm3_A 84 KGLHLLEFFVNKCHE-IGVGCEAWIKTGD-PKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTI 161 (175)
T ss_dssp HHHHHHHHHHHHHHH-HTCEEEEEEEESC-HHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHHH-CCCceEEEEecCC-HHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhCCCCCEEEE
Confidence 233344444444443 3888999999999 99999999999999999999999999887 9999999999999999999
Q ss_pred cCCCCC
Q 028280 135 KQPAAS 140 (211)
Q Consensus 135 ~~~~~~ 140 (211)
+.....
T Consensus 162 ~~~~~~ 167 (175)
T 2gm3_A 162 KRNADE 167 (175)
T ss_dssp ECCGGG
T ss_pred cCCcCC
Confidence 975433
No 14
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.91 E-value=2e-23 Score=174.39 Aligned_cols=173 Identities=11% Similarity=0.068 Sum_probs=128.3
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc-----chH-HHHHHH---HHHHHHHHHHHHHHhh
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR-----NRK-KLRLLR---LKGYQLALSFKDICND 71 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-----~~~-~~~~~~---~~~~~~~~~l~~~~~~ 71 (211)
|||++|||++|+|+.+..|+.||+.+|+..+++|+++||++..+.. ... .....+ +..++.++.+.+.+.
T Consensus 5 ~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 83 (319)
T 3olq_A 5 EKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYL- 83 (319)
T ss_dssp CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 6789999999999999999999999999999999999998653221 111 111111 222233333333333
Q ss_pred hCCCcEEEEEe-eCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCCCCCCccccccC
Q 028280 72 FFNTNVEIIVT-EGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQPAASPQLRTQTS 148 (211)
Q Consensus 72 ~~~i~~~~~v~-~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~~~~~~~~~~~~ 148 (211)
..|+++++.+. .|+ +.++|++++++.++||||||+++++++.+ +||++++++++++||||+|+..... ...+
T Consensus 84 ~~~v~~~~~~~~~g~-~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~~----~~~~ 158 (319)
T 3olq_A 84 EAGIQIDIKVIWHNR-PYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDKEWP----EYGT 158 (319)
T ss_dssp HTTCCEEEEEEECSC-HHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESSCCC----TTCE
T ss_pred hcCCeEEEEEEecCC-hHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCcccc----cCCe
Confidence 35999999998 898 99999999999999999999999998887 8999999999999999999975432 4566
Q ss_pred CCcCCCCCCc-----------cccc-----cC--cceeccccCCCCCCC
Q 028280 149 AATTPDRSSN-----------LDFS-----LS--QIEIDRLEVPDIPPP 179 (211)
Q Consensus 149 ~~~~~d~~~~-----------~d~~-----~~--~~~~~~l~v~~~~~~ 179 (211)
++++.|++.. +++. .. +.++..+|+.+.++.
T Consensus 159 Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~ 207 (319)
T 3olq_A 159 IVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPI 207 (319)
T ss_dssp EEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSC
T ss_pred EEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcch
Confidence 8899999852 1111 12 567888888655543
No 15
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.90 E-value=5e-23 Score=171.81 Aligned_cols=173 Identities=17% Similarity=0.136 Sum_probs=130.2
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc------chHHHHHHHHHHHHHHHHHHHHHhhh--
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR------NRKKLRLLRLKGYQLALSFKDICNDF-- 72 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~-- 72 (211)
+++++|||++|+|+.+..|++||+.+|+..+++|+++||+++.... .....+...+..++.++.+.+.+.+.
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 96 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASL 96 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999999999999999743210 11222233344444555555555542
Q ss_pred --CCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCCCCCCccccccC
Q 028280 73 --FNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQPAASPQLRTQTS 148 (211)
Q Consensus 73 --~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~~~~~~~~~~~~ 148 (211)
+++++++.+..|+ +.++|+++++ ++||||||+++++++.+ +||++++|+++++||||||+............+
T Consensus 97 ~~~~~~~~~~~~~g~-~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~~~~~~~~~~ 173 (309)
T 3cis_A 97 RAGPPTVHSEIVPAA-AVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVIIHDEDSVMPHPQQAP 173 (309)
T ss_dssp SSCCSCEEEEEESSC-HHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEEECTTCCCSCSSCCCC
T ss_pred cCCCceEEEEEecCC-HHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEEEcCCcccCCCCCCCe
Confidence 4899999999999 9999999986 79999999999998877 899999999999999999997654222334566
Q ss_pred CCcCCCCCCc----cccc-----cCcceeccccCCCC
Q 028280 149 AATTPDRSSN----LDFS-----LSQIEIDRLEVPDI 176 (211)
Q Consensus 149 ~~~~~d~~~~----~d~~-----~~~~~~~~l~v~~~ 176 (211)
++++.|++.. +++. ..+.++..+++.+.
T Consensus 174 Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~ 210 (309)
T 3cis_A 174 VLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSD 210 (309)
T ss_dssp EEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCS
T ss_pred EEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeec
Confidence 8889998732 1111 13456777888543
No 16
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.90 E-value=1.4e-23 Score=173.96 Aligned_cols=169 Identities=11% Similarity=0.042 Sum_probs=130.4
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc-------chHHHHHHHHHHHHHHHHHHHHHhhhC
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR-------NRKKLRLLRLKGYQLALSFKDICNDFF 73 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~ 73 (211)
|||++|||++|+|+.+..|+.||+.+|+..+++|+++||++..... .....+..++..++.++.+.+.+.. .
T Consensus 20 ~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 98 (294)
T 3loq_A 20 FQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIEA-A 98 (294)
T ss_dssp STTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH-c
Confidence 6899999999999999999999999999999999999999865421 1222233444455556666666654 4
Q ss_pred CCcEEE-EEe-eCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCCCCCCccccccCC
Q 028280 74 NTNVEI-IVT-EGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQPAASPQLRTQTSA 149 (211)
Q Consensus 74 ~i~~~~-~v~-~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~~~~~~~~~~~~~ 149 (211)
|+++++ .+. .|+ +.++| ++++.++||||||+++++.+.+ +||++++++++++||||+|+..... .....++
T Consensus 99 g~~~~~~~v~~~g~-~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~~~~--~~~~~~I 173 (294)
T 3loq_A 99 GIKAEVIKPFPAGD-PVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKHDMVV--NSLFDRV 173 (294)
T ss_dssp TCEEEECSSCCEEC-HHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECCCTTT--TCTTSEE
T ss_pred CCCcceeEeeccCC-hhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecCcccc--CccCCEE
Confidence 899998 777 899 99999 8999999999999999998877 8999999999999999999976532 1345667
Q ss_pred CcCCCCCCcc----ccc-----cCcceeccccCCC
Q 028280 150 ATTPDRSSNL----DFS-----LSQIEIDRLEVPD 175 (211)
Q Consensus 150 ~~~~d~~~~~----d~~-----~~~~~~~~l~v~~ 175 (211)
+++.|++... ++. ..+.++..+++.+
T Consensus 174 lv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~ 208 (294)
T 3loq_A 174 LVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSE 208 (294)
T ss_dssp EEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred EEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEcc
Confidence 8889987321 110 1345677777743
No 17
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.89 E-value=1.3e-22 Score=149.84 Aligned_cols=125 Identities=11% Similarity=0.041 Sum_probs=97.6
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEe-cC-C--Cc-----c--chHHHHHHHHHHHHHHHHHHHHH
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVF-PS-L--NS-----R--NRKKLRLLRLKGYQLALSFKDIC 69 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~-~~-~--~~-----~--~~~~~~~~~~~~~~~~~~l~~~~ 69 (211)
+||++|||++|+|+.+..|++||..+|+..+++|+++||. +. + .. . .....+...+..++.++.+ +.+
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 80 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEK 80 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHH
Confidence 4799999999999999999999999999999999999998 53 1 00 0 1111222223333444444 432
Q ss_pred -hhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEc
Q 028280 70 -NDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 70 -~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~ 135 (211)
....| ++++.+..|+ +.++|++++++.++||||||++++ |++++|+++++|||||||
T Consensus 81 ~~~~~~-~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~g~-------sv~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 81 LTGSTE-IPGVEYRIGP-LSEEVKKFVEGKGYELVVWACYPS-------AYLCKVIDGLNLASLIVK 138 (138)
T ss_dssp HHSCCC-CCCEEEECSC-HHHHHHHHHTTSCCSEEEECSCCG-------GGTHHHHHHSSSEEEECC
T ss_pred hhccCC-cceEEEEcCC-HHHHHHHHHHhcCCCEEEEeCCCC-------chHHHHHHhCCCceEeeC
Confidence 12346 7888889999 999999999999999999999976 889999999999999985
No 18
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.89 E-value=8.2e-23 Score=169.06 Aligned_cols=158 Identities=15% Similarity=0.048 Sum_probs=123.0
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (211)
|||++|||++|+|+.+..|+.||+.+|+..+++|+++||.++ . . .++.++.+.+.+. ..|+++++.
T Consensus 5 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~--~---~--------~~~~l~~~~~~~~-~~~~~~~~~ 70 (290)
T 3mt0_A 5 QAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKR--R---D--------HSAALNDLAQELR-EEGYSVSTN 70 (290)
T ss_dssp TTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSS--S---C--------CHHHHHHHHHHHH-HTTCCEEEE
T ss_pred hhhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCc--H---H--------HHHHHHHHHHHHh-hCCCeEEEE
Confidence 458999999999999999999999999999999999999973 1 0 1111222223333 358999999
Q ss_pred Eee-CCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCCCCCCccccccCCCcCCCCCC
Q 028280 81 VTE-GDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQPAASPQLRTQTSAATTPDRSS 157 (211)
Q Consensus 81 v~~-G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~~~~~~~~~~~~~~~~~d~~~ 157 (211)
+.. |+ +.++|++++++.++||||||+++++.+.+ +||++++++++++||||+|+..... ..++++++.|++.
T Consensus 71 ~~~~g~-~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~~~~~----~~~~Ilva~D~s~ 145 (290)
T 3mt0_A 71 QAWKDS-LHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKTARPW----TGGKILAAVDVGN 145 (290)
T ss_dssp EECSSS-HHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECCCSCS----TTCEEEEEECTTC
T ss_pred EEeCCC-HHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecCCCCC----CCCeEEEEECCCC
Confidence 884 66 99999999999999999999999998877 8999999999999999999854332 4566889999985
Q ss_pred c-------c----cc-----ccCcceeccccCCCCC
Q 028280 158 N-------L----DF-----SLSQIEIDRLEVPDIP 177 (211)
Q Consensus 158 ~-------~----d~-----~~~~~~~~~l~v~~~~ 177 (211)
. . ++ ...+.++..+|+.+.+
T Consensus 146 ~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~ 181 (290)
T 3mt0_A 146 NDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSP 181 (290)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC--
T ss_pred cchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCc
Confidence 4 1 11 1145678888885544
No 19
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.88 E-value=2.5e-22 Score=164.00 Aligned_cols=144 Identities=19% Similarity=0.134 Sum_probs=113.4
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc-----c-h----HH-------HHHHHHHHHHHHHHHH
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR-----N-R----KK-------LRLLRLKGYQLALSFK 66 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-----~-~----~~-------~~~~~~~~~~~~~~l~ 66 (211)
|+|||++|+|+.+..|++||..+|+..+++|+++||.+..... . . .. .+...+..++.++.+.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVR 80 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999998753211 0 0 00 1112223334444455
Q ss_pred HHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCC-cccc--cccHHHHHHccCCceEEEEcCCCCCCcc
Q 028280 67 DICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRS-FLHK--LAMSHNDISSSFNCRVLAIKQPAASPQL 143 (211)
Q Consensus 67 ~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~-~~~~--~gs~a~~vl~~a~~PVLvV~~~~~~~~~ 143 (211)
+.+.. .|+++++.+..|+ +.++|+++ +.++||||||+++++ ++.+ +||++++++++++||||+|++...
T Consensus 81 ~~~~~-~g~~~~~~~~~g~-~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~~~~---- 152 (268)
T 3ab8_A 81 QSALA-AGVAVEAVLEEGV-PHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPGEPV---- 152 (268)
T ss_dssp HHHHH-TTCCEEEEEEEEC-HHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECSSCC----
T ss_pred HHHHh-CCCCeEEEEecCC-HHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECCCCC----
Confidence 55544 4889999999999 99999999 789999999999998 8876 999999999999999999997543
Q ss_pred ccccCCCcCCCCC
Q 028280 144 RTQTSAATTPDRS 156 (211)
Q Consensus 144 ~~~~~~~~~~d~~ 156 (211)
...+++++.|++
T Consensus 153 -~~~~ilv~~d~s 164 (268)
T 3ab8_A 153 -ELEGALLGYDAS 164 (268)
T ss_dssp -CCCEEEEECCSC
T ss_pred -CCCEEEEEECCC
Confidence 345678899987
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.87 E-value=1.2e-21 Score=161.97 Aligned_cols=134 Identities=13% Similarity=0.150 Sum_probs=105.7
Q ss_pred CCCeEEEEecCCHH-------HHHHHHHHHHhhccCCCEEEEEEEecCCCccchHH-HHHHHHHHHHHHHHHHHHHhhhC
Q 028280 2 DVKKIVVIVEDVDA-------ARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKK-LRLLRLKGYQLALSFKDICNDFF 73 (211)
Q Consensus 2 ~~k~ILv~vD~s~~-------s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~ 73 (211)
.+++||||+|+|+. +..++++|..++...+++|+++||.+......... .+..++..++..+.+.++++++
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 211 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAEY- 211 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHHc-
Confidence 47899999999998 99999999999999999999999998643211000 0122223334445566666655
Q ss_pred CC-cEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCC
Q 028280 74 NT-NVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 74 ~i-~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
|+ .++..+..|+ +.++|++++++.++||||||+++++++.+ +||++++|+++++||||+||+.
T Consensus 212 g~~~~~~~v~~g~-~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~ 277 (290)
T 3mt0_A 212 GFSDEQLHIEEGP-ADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVLVLKPD 277 (290)
T ss_dssp TCCTTTEEEEESC-HHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEEEECCH
T ss_pred CCCcceEEEeccC-HHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEEEECCC
Confidence 66 3667788998 99999999999999999999999999988 9999999999999999999864
No 21
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.86 E-value=8.6e-21 Score=158.41 Aligned_cols=136 Identities=20% Similarity=0.197 Sum_probs=110.3
Q ss_pred CCCeEEEEecCCH-------HHHHHHHHHHHhhccC--CCEEEEEEEecCCCccc------hHHHHHHHHHHHHHHHHHH
Q 028280 2 DVKKIVVIVEDVD-------AARAALLWALQNLLRF--GDVVTLLHVFPSLNSRN------RKKLRLLRLKGYQLALSFK 66 (211)
Q Consensus 2 ~~k~ILv~vD~s~-------~s~~al~~A~~la~~~--~a~l~llhV~~~~~~~~------~~~~~~~~~~~~~~~~~l~ 66 (211)
.+++|||++|+|+ .+..++++|..++... +++|+++||.+...... ....+..++..++..+.+.
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQHLIAMK 234 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHHHHHHHH
Confidence 3789999999999 6799999999999998 99999999998754321 1122333344445556666
Q ss_pred HHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCCC
Q 028280 67 DICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 67 ~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
+++++++...++..+..|+ +.++|++++++.++||||||+++++++.+ +||++++|+++++||||+||+..
T Consensus 235 ~~~~~~~~~~~~~~v~~g~-~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~pVLvv~~~~ 307 (319)
T 3olq_A 235 ELRQKFSIPEEKTHVKEGL-PEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIKPDG 307 (319)
T ss_dssp HHHHHTTCCGGGEEEEESC-HHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred HHHHHhCCCcccEEEecCC-cHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCCEEEECCCC
Confidence 6666653224667788998 99999999999999999999999999988 99999999999999999999754
No 22
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.85 E-value=1.5e-20 Score=156.79 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=104.7
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc---chHHHHHHHHHHHHHHHHHHHHHhhhCCCcEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR---NRKKLRLLRLKGYQLALSFKDICNDFFNTNVE 78 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 78 (211)
.+++|||++|+|+.+..++.+|..++...+++|+++||.++.... .....+..++..+.+.+.+..+.+.+++++++
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 249 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGWQERYPNVAIT 249 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTHHHHCTTSCEE
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence 368999999999999999999999999999999999998764321 11111222222222333333333334689999
Q ss_pred EEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCC
Q 028280 79 IIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 79 ~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+.+..|+ +.++|+++++ ++||||||+++++++.+ +||++++|+++++||||+|++.
T Consensus 250 ~~~~~g~-~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~pVlvv~~~ 307 (309)
T 3cis_A 250 RVVVRDQ-PARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARES 307 (309)
T ss_dssp EEEESSC-HHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSCEEEECC-
T ss_pred EEEEcCC-HHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCCCCEEEeCCC
Confidence 9999998 9999999997 89999999999999888 9999999999999999999853
No 23
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.84 E-value=2.5e-20 Score=154.30 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=105.4
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v 81 (211)
++++|||++|+++.+..++++|..++...+++|+++||.+... .++..+.+.+.+.+ .++++++.+
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-------------~~~~l~~~~~~l~~-~~~~~~~~~ 234 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-------------KTADLRVMEEVIGA-EGIEVHVHI 234 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-------------CHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-------------HHHHHHHHHHHHHH-cCCcEEEEE
Confidence 4789999999999999999999999999999999999998643 11222334444443 388899999
Q ss_pred eeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCCC
Q 028280 82 TEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 82 ~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
..|+ +.++|.+++++.++||||||+++++++.+ +||++++++++++||||+|+++.
T Consensus 235 ~~g~-~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~~~~ 292 (294)
T 3loq_A 235 ESGT-PHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKRGD 292 (294)
T ss_dssp ECSC-HHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECSCT
T ss_pred ecCC-HHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEECCCC
Confidence 9998 99999999999999999999999999988 99999999999999999998754
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.75 E-value=8.3e-18 Score=137.06 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=94.5
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v 81 (211)
.+++|||++|+|+.+..++.+|..++...+++++++||.++. + ..++..+.+.+.+.+ .|+++++.+
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~--------~----~~~~~l~~~~~~l~~-~~~~~~~~~ 219 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP--------A----RAEAWALEAEAYLRD-HGVEASALV 219 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH--------H----HHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH--------H----HHHHHHHHHHHHHHH-cCCceEEEE
Confidence 368999999999999999999999999999999999998652 1 112223334444444 388899988
Q ss_pred eeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEc
Q 028280 82 TEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 82 ~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~ 135 (211)
..|+ +.++|.+++++. ||||||+ ++.+ +||++++++++++||||+||
T Consensus 220 ~~g~-~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 220 LGGD-AADHLLRLQGPG--DLLALGA----PVRRLVFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp ECSC-HHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHHHHHHHHCSSCEEEEC
T ss_pred eCCC-hHHHHHHHHHhC--CEEEECC----cccccEeccHHHHHHhcCCCCEEEeC
Confidence 8998 999999999987 9999999 4445 89999999999999999985
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=96.13 E-value=0.23 Score=35.77 Aligned_cols=128 Identities=11% Similarity=0.003 Sum_probs=76.0
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCC-CEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEE-EE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFG-DVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVE-II 80 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~-a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~-~~ 80 (211)
|++|||.++-.-.+.........+..... .++.+|-=.+++........+........+...+..+.+ .|..++ ..
T Consensus 1 m~~vlVlae~tl~~~dl~~vl~~l~~~~~~~~f~VLVPa~~~~a~~~e~~~a~~~A~~~l~~sl~aL~~--~G~~a~~G~ 78 (138)
T 2iel_A 1 MARYLVVAHRTAKSPELAAKLKELLAQDPEARFVLLVPAVPPPGWVYEENEVRRRAEEEAAAAKRALEA--QGIPVEEAK 78 (138)
T ss_dssp -CEEEEECSTTTTCHHHHHHHHHHHHHCTTCEEEEEEEEECCCCSCC--CHHHHHHHHHHHHHHHHHHT--TTCCCSEEE
T ss_pred CceEEEEecCccCcHhHHHHHHHhhcCCCceEEEEEecCCCCcccccChHHHHHHHHHHHHHHHHHHHH--cCCcccccc
Confidence 58999999876555555444355555443 565333312221111111111222223334444444433 388888 99
Q ss_pred EeeCCCHHHHHHHHHHHhC--CCEEEEecCCCCccccccc-HHHHHHccCCceEEEE
Q 028280 81 VTEGDQEGARIAALVREIG--ASALVVGLHDRSFLHKLAM-SHNDISSSFNCRVLAI 134 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~~--adLIVmG~~~~~~~~~~gs-~a~~vl~~a~~PVLvV 134 (211)
+.+++ |..++.....+.+ +|=||+-+..+.--..|-. .+.+.=+ ...||+-+
T Consensus 79 v~d~~-Pl~AL~~~v~~~~~~~deiIV~T~Ph~vs~~fh~DwasrAr~-~gvPVlhl 133 (138)
T 2iel_A 79 AGDIS-PLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLDVHTQAER-FGLPVIHV 133 (138)
T ss_dssp EEESS-HHHHHHHHHHHSTTSCSEEEEEECCTTTCHHHHTTHHHHGGG-GSSCEEEE
T ss_pred cCCCC-hHHHHHHHHHhcCCCCceEEEEcCCchHHHHHhccHHHHHHh-cCCCEEEE
Confidence 99999 9999999999999 9999999887653222222 5555544 89999865
No 26
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=94.03 E-value=1 Score=36.94 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=64.9
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCE-EEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDV-VTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~-l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
++|+|++.|..+|-.++..+..+....|.+ +.++||...... .. .+-.+.++++|+.. |+++.+.-.
T Consensus 25 ~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~---~s--------~~~~~~v~~~a~~l-gi~~~v~~~ 92 (317)
T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRE---SA--------ERDEEFCKEFAKER-NMKIFVGKE 92 (317)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSST---HH--------HHHHHHHHHHHHHH-TCCEEEEEC
T ss_pred CEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCc---cc--------HHHHHHHHHHHHHc-CCcEEEEEE
Confidence 689999999999999998888877667777 999999754321 10 11123456666655 777665432
Q ss_pred e--------CCCHH--------HHHHHHHHHhCCCEEEEecCCCC
Q 028280 83 E--------GDQEG--------ARIAALVREIGASALVVGLHDRS 111 (211)
Q Consensus 83 ~--------G~~~~--------~~I~~~a~~~~adLIVmG~~~~~ 111 (211)
. |.++. ..+.+.+++.+++.|+.|.+...
T Consensus 93 ~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD 137 (317)
T 1wy5_A 93 DVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLND 137 (317)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHH
T ss_pred echhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhH
Confidence 1 22122 24567788899999999987543
No 27
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=93.81 E-value=0.69 Score=40.14 Aligned_cols=98 Identities=19% Similarity=0.080 Sum_probs=67.9
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
++|+|++.|..+|-.++..+..+....+.++.++||...... .. ...-.+.++++|++. |+++.+.-..
T Consensus 19 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg--~~--------s~~~~~~v~~~~~~l-gi~~~v~~~~ 87 (464)
T 3a2k_A 19 AAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRG--RE--------SEEEMEFVKRFCVER-RILCETAQID 87 (464)
T ss_dssp SBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCT--HH--------HHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred CEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCc--cc--------cHHHHHHHHHHHHHc-CCcEEEEEec
Confidence 589999999999999999888888778889999999754321 00 111234467777765 7776665332
Q ss_pred --------CCCH--------HHHHHHHHHHhCCCEEEEecCCCCc
Q 028280 84 --------GDQE--------GARIAALVREIGASALVVGLHDRSF 112 (211)
Q Consensus 84 --------G~~~--------~~~I~~~a~~~~adLIVmG~~~~~~ 112 (211)
|.++ ...+.++|++.+++.|++|.|....
T Consensus 88 ~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~ 132 (464)
T 3a2k_A 88 VPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQ 132 (464)
T ss_dssp CHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHH
T ss_pred hhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHHH
Confidence 1112 2456677888899999999875443
No 28
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=93.04 E-value=2.6 Score=34.33 Aligned_cols=124 Identities=14% Similarity=0.085 Sum_probs=81.8
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G 84 (211)
+|||++.........++.|..+.. ..+-+++++|.+...... +.+ + .+.+.+.+++. ++..-+.++..
T Consensus 22 ~iLV~sg~p~~~~~li~la~~lt~-~~G~ltv~~i~p~~~~~~------l~~---q-l~~l~~~l~~r-~v~a~~~vi~a 89 (294)
T 3g40_A 22 NLLVPVEDPRELMGTFDFLRDITY-PKGSVKLLGLAGNTDKEN------LLS---Q-LPSISEGFQEE-GVFSSWTIIDT 89 (294)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHT-TTCEEEEEECC---CTTC------HHH---H-HHHHHHHHHHT-TCEEEEEEC--
T ss_pred cEEEecCCchhhhhHHHHHHHhcc-CceeEEEEEEccCCCccH------HHH---H-HHHHHHHHHhC-CceeEEEEEec
Confidence 689999877788889999888887 567899999976543210 001 1 14456666653 88888888777
Q ss_pred CCHHHHHHHHHHHhC-----CCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcCCCCCC
Q 028280 85 DQEGARIAALVREIG-----ASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQPAASP 141 (211)
Q Consensus 85 ~~~~~~I~~~a~~~~-----adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~~~~~~ 141 (211)
.|+.+++....+.++ ++.|+||......-.. +..+... +.+....|++.+......
T Consensus 90 ~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~y~~~i~~-~~~~~~nVlil~~~~~~~ 151 (294)
T 3g40_A 90 AEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEIREIIRK-ASMYRMGVLLFSKHPQAG 151 (294)
T ss_dssp ---CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHHHHHHHHH-HHHTTCEEEEEECCTTTT
T ss_pred CChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHHHHHHHHH-HHHhCceEEEEecCCccC
Confidence 779999999888865 6899999875543322 5555544 456799999998655443
No 29
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=92.02 E-value=1.5 Score=33.99 Aligned_cols=88 Identities=11% Similarity=0.047 Sum_probs=59.7
Q ss_pred CCCeEEEEecC-----CHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCc
Q 028280 2 DVKKIVVIVED-----VDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTN 76 (211)
Q Consensus 2 ~~k~ILv~vD~-----s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 76 (211)
.|+.|||-++- .+.+..+|..|.+|+...|.++++|-+.+.... . +++... + |.+
T Consensus 2 ~m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~~~---~---------------~~~~~~-~-Gad 61 (217)
T 3ih5_A 2 NANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKE---I---------------EKQILP-Y-GVD 61 (217)
T ss_dssp -CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCCTT---T---------------HHHHGG-G-TCS
T ss_pred CcccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCHHH---H---------------HHHHHh-c-CCC
Confidence 46789998874 477999999999999988999999988764211 0 112222 2 444
Q ss_pred EEEEEee----CCC---HHHHHHHHHHHhCCCEEEEecCC
Q 028280 77 VEIIVTE----GDQ---EGARIAALVREIGASALVVGLHD 109 (211)
Q Consensus 77 ~~~~v~~----G~~---~~~~I~~~a~~~~adLIVmG~~~ 109 (211)
--..+-. +.+ .+..|.+.++++++|+|++|...
T Consensus 62 ~v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 62 KLHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp EEEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred EEEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3232221 221 35678899999999999999753
No 30
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=91.66 E-value=4.2 Score=32.32 Aligned_cols=98 Identities=10% Similarity=-0.036 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHHhhccCCC--EEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe------eC
Q 028280 13 VDAARAALLWALQNLLRFGD--VVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT------EG 84 (211)
Q Consensus 13 s~~s~~al~~A~~la~~~~a--~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~------~G 84 (211)
++.+..|++.|.++... |. +++++.+.+... .+ .+++... + |.+--+.+. .+
T Consensus 39 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~a------~~-----------~lr~ala-~-GaD~vi~v~~d~~~~~~ 98 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQC------QE-----------TIRTALA-M-GADRGIHVEVPPAEAER 98 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTTH------HH-----------HHHHHHH-H-TCSEEEEEECCHHHHTT
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChhH------HH-----------HHHHHHh-c-CCCEEEEEecChhhccc
Confidence 45788999999999876 66 999999886310 01 1222222 1 444333333 13
Q ss_pred CCH---HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 85 DQE---GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 85 ~~~---~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
.++ +..|...+++.++|+|++|....++-. +.+.-.+....+.|.+
T Consensus 99 ~~~~~~A~~La~~i~~~~~dlVl~G~~s~d~d~--~~v~p~lA~~L~~~~v 147 (255)
T 1efv_B 99 LGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDC--NQTGQMTAGFLDWPQG 147 (255)
T ss_dssp CCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCC--CCHHHHHHHHHTCCEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccCCch--hhHHHHHHHHhCCCcc
Confidence 223 346778888889999999988765332 2234444445555443
No 31
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=91.50 E-value=2.5 Score=33.82 Aligned_cols=102 Identities=13% Similarity=0.090 Sum_probs=60.5
Q ss_pred ecCCHHHHHHHHHHHHhhccCCC--EEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee----
Q 028280 10 VEDVDAARAALLWALQNLLRFGD--VVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE---- 83 (211)
Q Consensus 10 vD~s~~s~~al~~A~~la~~~~a--~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~---- 83 (211)
.-.++.+..|++.|.++....|. ++++|.+.+... .+ .+++... + |.+--+.+..
T Consensus 33 ~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~~~------~~-----------~lr~ala-~-GaD~vi~v~d~~~~ 93 (264)
T 1o97_C 33 YDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDRV------DE-----------SLRKCLA-K-GADRAVRVWDDAAE 93 (264)
T ss_dssp EEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGGG------HH-----------HHHHHHH-T-TCSEEEEECCGGGT
T ss_pred CccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCchhH------HH-----------HHHHHHh-c-CCCEEEEEcCcccc
Confidence 34567899999999999987776 999998875310 01 1222222 2 4443333322
Q ss_pred CCCH---HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 84 GDQE---GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 84 G~~~---~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
|.++ +..|...+++.++|+|++|....++-. +.+.-.+....+.|.+
T Consensus 94 ~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~--~~v~p~lA~~L~~~~v 143 (264)
T 1o97_C 94 GSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAY--ASTGISVASYLNWPHA 143 (264)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEEEEESCCTTTCC--CCHHHHHHHHHTCCEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCch--hhHHHHHHHHhCCCcc
Confidence 1222 357778888889999999988765332 2233344444444443
No 32
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=91.43 E-value=1 Score=39.18 Aligned_cols=112 Identities=12% Similarity=0.100 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEEEecCCCccc-hHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 15 AARAALLWALQNLLRFGDVVTLLHVFPSLNSRN-RKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 15 ~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
....||..|.+.+...+..|..|.+.++..... ...... ..+.+..+.+.+++. |+.+ .+..|+ +.+.|.+
T Consensus 50 ~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~~~~~r~~F----l~~sL~~L~~~L~~~-G~~L--~v~~g~-~~~~l~~ 121 (482)
T 2xry_A 50 EDNWALLFSRAIAKEANVPVVVVFCLTDEFLEAGIRQYEF----MLKGLQELEVSLSRK-KIPS--FFLRGD-PGEKISR 121 (482)
T ss_dssp SSCHHHHHHHHHHHHHTSCEEEEEEECTTGGGSCHHHHHH----HHHHHHHHHHHHHHT-TCCE--EEEESC-HHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCcEEEEEEeChhhhccCHHHHHH----HHHHHHHHHHHHHHc-CCcE--EEEeCC-HHHHHHH
Confidence 345678888887766677898999988643211 111111 112223333333332 5544 456799 9999999
Q ss_pred HHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 94 LVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 94 ~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
++++.+++.|+.-...... .-.....+....+|++..+...
T Consensus 122 l~~~~~~~~V~~~~~~~~~---~~~~~~~v~~~lgi~~~~~~~~ 162 (482)
T 2xry_A 122 FVKDYNAGTLVTDFSPLRI---KNQWIEKVISGISIPFFEVDAH 162 (482)
T ss_dssp HHHHTTCSEEEEECCCSHH---HHHHHHHHHHHCCSCEEEECCS
T ss_pred HHHHcCCCEEEEecccchh---HHHHHHHHHHHcCCEEEEEeCC
Confidence 9999999999986532211 1112334555559999888653
No 33
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=91.38 E-value=4.4 Score=32.14 Aligned_cols=99 Identities=10% Similarity=0.071 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHhhccCCC--EEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe-e-----
Q 028280 12 DVDAARAALLWALQNLLRFGD--VVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT-E----- 83 (211)
Q Consensus 12 ~s~~s~~al~~A~~la~~~~a--~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~-~----- 83 (211)
.++.+..|++.|.++... |. +++++.+.+... .+ .+++... + |.+--+.+. .
T Consensus 35 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~a------~~-----------~lr~ala-~-GaD~vi~v~~d~~~~~ 94 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQA------AE-----------TLRTALA-M-GADRAILVVAADDVQQ 94 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGGG------HH-----------HHHHHHH-H-TCSEEEEEECCSSTTC
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChhH------HH-----------HHHHHHh-c-CCCEEEEEecChhhcc
Confidence 457889999999999876 66 999998885310 01 1222222 1 444333333 1
Q ss_pred CCCH---HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 84 GDQE---GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 84 G~~~---~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
+.++ +..|...+++.++|+|++|....++-. +.+.-.+....+.|.+
T Consensus 95 ~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~--~~v~p~lA~~L~~~~v 144 (252)
T 1efp_B 95 DIEPLAVAKILAAVARAEGTELIIAGKQAIDNDM--NATGQMLAAILGWAQA 144 (252)
T ss_dssp CCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCC--CCHHHHHHHHHTCEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCch--hhHHHHHHHHhCCCcc
Confidence 2223 456778888889999999988765332 2233444445555544
No 34
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=89.28 E-value=1 Score=36.65 Aligned_cols=106 Identities=9% Similarity=0.009 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHH
Q 028280 15 AARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAAL 94 (211)
Q Consensus 15 ~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~ 94 (211)
+..-++-.|-.+...++++|.+.-|++. +...+ .+...+.++.+.. .+..+..++. . +..+|+..
T Consensus 177 Ng~LmlllAylL~~nW~A~I~L~~vV~d---------e~a~~---~a~~~l~~Lv~~~-Ri~a~~~vv~-~-~F~~il~~ 241 (294)
T 3g40_A 177 NMDLALLIAYKLKSNWKASLSFMTFAPT---------AIQAQ---AAENFLQSLAELA-RIPNVKMQVL-R-ENPIKSSK 241 (294)
T ss_dssp TTHHHHHHHHHHHHHHTCEEEEEEECSS---------HHHHH---HHHHHHHHHHHHH-TCCSCEEEEE-S-SCTTTSSS
T ss_pred chhHHHHHHHHHhhCcCCeEEEEEecCC---------HHHHH---HHHHHHHHHHHHh-cCCceEEEec-C-chHHHHhh
Confidence 4455666666666678999999999875 22222 2233344444431 2222222333 4 56666655
Q ss_pred HHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCCCCCC
Q 028280 95 VREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAASP 141 (211)
Q Consensus 95 a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~~~~~ 141 (211)
+ .+|||+++|-...-.++ ...+++..++...|.++.....+
T Consensus 242 s--~~ADL~flGl~~~~df~----~~~~~~~~~~ssc~f~~dsg~e~ 282 (294)
T 3g40_A 242 L--PFASLHIFSLDPNPDLD----LARHLMEKAGSSCIFALDSGEEN 282 (294)
T ss_dssp C--CCCSEEEEECCSSCCHH----HHHHHHHHHTSEEEEEECCSCCC
T ss_pred C--cCCCEEEEcCCCCCcHH----HHHHHHHhcCCeEEEEecCchhH
Confidence 4 57999999986655554 56688888999999998765554
No 35
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=88.55 E-value=3.1 Score=36.59 Aligned_cols=122 Identities=13% Similarity=-0.045 Sum_probs=68.9
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHH
Q 028280 11 EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGAR 90 (211)
Q Consensus 11 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~ 90 (211)
|..-..-.||..|++.+...+..|..|.+.++........ ........+.++.+.+.+++. |+. ..+..|+ +.+.
T Consensus 47 DLRl~DN~AL~~A~~~a~~~~~pVl~vfildp~~~~~~~~-~~r~~FL~~sL~dL~~~L~~l-G~~--L~v~~G~-p~~v 121 (506)
T 3umv_A 47 DQRLADNWALLHAAGLAAASASPLAVAFALFPRPFLLSAR-RRQLGFLLRGLRRLAADAAAR-HLP--FFLFTGG-PAEI 121 (506)
T ss_dssp CCCSTTCHHHHHHHHHHHHHTCCEEEEEECCCTTCGGGCC-HHHHHHHHHHHHHHHHHHHHT-TCC--EEEESSC-TTHH
T ss_pred CcchhhcHHHHHHHHhhhhcCCCEEEEEeccchhhccCCC-HHHHHHHHHHHHHHHHHHHHc-CCc--eEEEecC-hHHH
Confidence 3334455688889888877778899999998752111100 111111222223333333332 444 4567899 9999
Q ss_pred HHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHc--cCCceEEEEcCCCC
Q 028280 91 IAALVREIGASALVVGLHDRSFLHK-LAMSHNDISS--SFNCRVLAIKQPAA 139 (211)
Q Consensus 91 I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~--~a~~PVLvV~~~~~ 139 (211)
.+++++.+++.|+.... .....+ .-......++ ..+|++..+.....
T Consensus 122 -~~L~~~~~a~~V~~d~e-p~~~~r~rD~~V~~~l~~~~~gi~~~~~~~~~l 171 (506)
T 3umv_A 122 -PALVQRLGASTLVADFS-PLRPVREALDAVVGDLRREAPGVAVHQVDAHNV 171 (506)
T ss_dssp -HHHHHHTTCSEEEECCC-CCHHHHHHHHHHHHHHHHHCTTSEEEEECCSCS
T ss_pred -HHHHHhcCCCEEEeccC-hhHHHHHHHHHHHHHHhhccCCeEEEEeCCcEE
Confidence 99999999999997321 111111 1111122333 67899988875433
No 36
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=86.66 E-value=4.7 Score=33.20 Aligned_cols=95 Identities=9% Similarity=0.046 Sum_probs=60.0
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
+.+++|++.|..+|-..|..+.......+..+.++|+...... . + ..+...++++++ |+++.+.-.
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~---~--e--------t~~~v~~~~~~~-gi~l~v~~~ 111 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKF---Q--E--------MYRFRDQMVEEM-GLDLITHIN 111 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCC---H--H--------HHHHHHHHHHTT-TCCEEEECC
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCC---H--H--------HHHHHHHHHHHc-CCCEEEEeC
Confidence 5689999999999999998888876654567888998654332 1 1 112344455544 666555321
Q ss_pred -----eCCCHH-------------HHHHHHHHHhCCCEEEEecCCCC
Q 028280 83 -----EGDQEG-------------ARIAALVREIGASALVVGLHDRS 111 (211)
Q Consensus 83 -----~G~~~~-------------~~I~~~a~~~~adLIVmG~~~~~ 111 (211)
.|.++. +.+.+++++.+++.++.|.+...
T Consensus 112 ~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~De 158 (325)
T 1zun_A 112 PDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDE 158 (325)
T ss_dssp --------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTS
T ss_pred chHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccch
Confidence 121111 24667777889999999987643
No 37
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=86.34 E-value=8.9 Score=28.88 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=29.5
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
|..++|+|++.|..+|-.++.++.+. +.++..+|+...
T Consensus 1 m~~~~v~v~lSGG~DS~~ll~ll~~~----~~~v~~~~~~~~ 38 (219)
T 3bl5_A 1 MKKEKAIVVFSGGQDSTTCLLWALKE----FEEVETVTFHYN 38 (219)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCCCCEEEEccCcHHHHHHHHHHHHc----CCceEEEEEeCC
Confidence 77789999999999998888776553 468889999864
No 38
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=84.79 E-value=7.1 Score=29.55 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=29.4
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~ 43 (211)
|.+++|+|++.|...|-.++.++. ..|.++..+|+....
T Consensus 4 m~~~kv~v~~SGG~DS~~ll~ll~----~~g~~v~~~~v~~~~ 42 (203)
T 3k32_A 4 MKLMDVHVLFSGGKDSSLSAVILK----KLGYNPHLITINFGV 42 (203)
T ss_dssp --CEEEEEECCCSHHHHHHHHHHH----HTTEEEEEEEEECSS
T ss_pred ccCCeEEEEEECcHHHHHHHHHHH----HcCCCeEEEEEeCCC
Confidence 778899999999999887776544 356789999987653
No 39
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=84.56 E-value=6 Score=34.96 Aligned_cols=122 Identities=8% Similarity=-0.096 Sum_probs=70.9
Q ss_pred cCCHHHHHHHHHHHHhhcc--CCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHH
Q 028280 11 EDVDAARAALLWALQNLLR--FGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEG 88 (211)
Q Consensus 11 D~s~~s~~al~~A~~la~~--~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~ 88 (211)
|.--....||..|++.+.. .+..|..|.+.++.................+.+..+.+.+++. |+.+ .+..|+ +.
T Consensus 38 DLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~-G~~L--~v~~g~-~~ 113 (543)
T 2wq7_A 38 GLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVGANRWRFLQQTLEDLDNQLRKL-NSRL--FVVRGK-PA 113 (543)
T ss_dssp CCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSCHHHHHHHHHHHHHHHHHHHHT-TCCC--EEEESC-HH
T ss_pred CcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccCCCHHHHHHHHHHHHHHHHHHHHC-CCeE--EEEeCC-HH
Confidence 4555566788888877754 4566888999886432110000000011122223333333332 5544 446798 99
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcCC
Q 028280 89 ARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+.|.+++++.+++.|+.-..- ...+. .-.-....+...+|++..+...
T Consensus 114 ~~l~~l~~~~~~~~v~~~~~~-~p~~~~rd~~v~~~~~~~gi~~~~~~~~ 162 (543)
T 2wq7_A 114 EVFPRIFKSWRVEMLTFETDI-EPYSVTRDAAVQKLAKAEGVRVETHCSH 162 (543)
T ss_dssp HHHHHHHHHTTEEEEEEECCC-SHHHHHHHHHHHHHHHHHTCEEEEECCS
T ss_pred HHHHHHHHHcCCCEEEEecCc-CHHHHHHHHHHHHHHHHcCCEEEEecCC
Confidence 999999999999999886432 22222 2223345566678999888764
No 40
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=84.42 E-value=8.4 Score=28.30 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=49.2
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
....++++ |++++..|..-....+.+.+++++...+.||.++.+...+ +.-+...+.+||+-|+.
T Consensus 18 a~~~l~~~-gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~L------pgvva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 18 AVNILKEF-GVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHL------PGVVASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHHT-TCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCH------HHHHHTTCSSCEEEEEE
T ss_pred HHHHHHHc-CCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhh------HHHHHhccCCCEEEecC
Confidence 33444444 8999999887666789999999987679999998765544 33466778999999986
No 41
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=84.38 E-value=4 Score=27.45 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCC-----Ccccc-cccHHHHHHccCCceEEEEcC
Q 028280 87 EGARIAALVREIGASALVVGLHDR-----SFLHK-LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~-----~~~~~-~gs~a~~vl~~a~~PVLvV~~ 136 (211)
..+.|.+++++++++.||+|-... +...+ .-..++++-.. ++||..+-+
T Consensus 39 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~~~DE 93 (98)
T 1iv0_A 39 DVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEVELWDE 93 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCEEEECC
Confidence 468899999999999999995432 21111 22355666666 899999854
No 42
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=84.21 E-value=12 Score=31.95 Aligned_cols=89 Identities=12% Similarity=0.083 Sum_probs=57.1
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCc-EEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTN-VEII 80 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~-~~~~ 80 (211)
..++|+|++.+..+|-.++.|+.+. |.+++.+|+...... + .+.+++.|... |++ +.+.
T Consensus 4 ~~~kVvvalSGGlDSsvll~lL~e~----G~eV~av~vd~g~~~---e------------~e~a~~~A~~l-Gi~~~~vv 63 (413)
T 2nz2_A 4 SKGSVVLAYSGGLDTSCILVWLKEQ----GYDVIAYLANIGQKE---D------------FEEARKKALKL-GAKKVFIE 63 (413)
T ss_dssp -CEEEEEECCSSHHHHHHHHHHHHT----TEEEEEEEEESSCCC---C------------HHHHHHHHHHH-TCSEEEEE
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEECCcHH---H------------HHHHHHHHHHh-CCCEEEEE
Confidence 3578999999999999988887653 678999999765321 0 11122333322 333 2221
Q ss_pred E------------------------eeCCC-----HHHHHHHHHHHhCCCEEEEecCCC
Q 028280 81 V------------------------TEGDQ-----EGARIAALVREIGASALVVGLHDR 110 (211)
Q Consensus 81 v------------------------~~G~~-----~~~~I~~~a~~~~adLIVmG~~~~ 110 (211)
- ..|.. ....+.++|++.+++.|+.|.++.
T Consensus 64 d~~~ef~~~~~~~~i~~~a~~e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~~ 122 (413)
T 2nz2_A 64 DVSREFVEEFIWPAIQSSALYEDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGK 122 (413)
T ss_dssp ECHHHHHHHTHHHHHHTTCCBTTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTT
T ss_pred eChHHHHHHHHHHHHHhCcccccccccccccchHHHHHHHHHHHHHcCCCEEEECCcCc
Confidence 0 11221 146778899999999999999874
No 43
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=83.71 E-value=7.5 Score=29.02 Aligned_cols=64 Identities=16% Similarity=0.218 Sum_probs=45.2
Q ss_pred HHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH---hCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 66 KDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 66 ~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~---~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
...++++ |++++..|..-....+.+.+++++ .+++.||.|+.+...+- .-+.-...+||+-|+-
T Consensus 32 ~~~l~~~-gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLp------gvvA~~t~~PVIgVPv 98 (173)
T 4grd_A 32 VAILQEF-GVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLP------GMLAAKTTVPVLGVPV 98 (173)
T ss_dssp HHHHHHT-TCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHH------HHHHHHCCSCEEEEEE
T ss_pred HHHHHHc-CCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccch------hhheecCCCCEEEEEc
Confidence 3344444 899999988766566666666655 67899999987655442 2356678999999974
No 44
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=83.67 E-value=9.4 Score=28.69 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=47.4
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH---hCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~---~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
..+.++++ |++++..|..-....+.+.+++++ .+++.||.|+.+...+- --+...+..||+-|+..
T Consensus 41 a~~~L~~~-gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLp------GvvAa~T~~PVIGVPv~ 109 (181)
T 4b4k_A 41 ACDILDEL-NIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP------GMVAAKTNLPVIGVPVQ 109 (181)
T ss_dssp HHHHHHHT-TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHH------HHHHTTCCSCEEEEECC
T ss_pred HHHHHHHc-CCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccch------hhHHhcCCCCEEEEecC
Confidence 34444444 899999988866566667766654 67899999987655442 34667889999999864
No 45
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=82.09 E-value=12 Score=28.85 Aligned_cols=105 Identities=10% Similarity=0.090 Sum_probs=61.8
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
|+||.|-+.++..+..+|-.+.+.-. .+++|.+|-... +.. ...+++.+. |+++...-.
T Consensus 2 m~riavl~Sg~Gsnl~ali~~~~~~~-l~~eI~~Visn~--~~a-----------------~v~~~A~~~-gIp~~~~~~ 60 (211)
T 3p9x_A 2 MKRVAIFASGSGTNAEAIIQSQKAGQ-LPCEVALLITDK--PGA-----------------KVVERVKVH-EIPVCALDP 60 (211)
T ss_dssp -CEEEEECCTTCHHHHHHHHHHHTTC-CSSEEEEEEESC--SSS-----------------HHHHHHHTT-TCCEEECCG
T ss_pred CCEEEEEEeCCchHHHHHHHHHHcCC-CCcEEEEEEECC--CCc-----------------HHHHHHHHc-CCCEEEeCh
Confidence 57898988888888888777665332 456766644422 211 133344433 777644211
Q ss_pred e--CCCH---HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 83 E--GDQE---GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 83 ~--G~~~---~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
. .+ . ..++.+..++.++|+||+...++-.- ..++...+..++=+.+
T Consensus 61 ~~~~~-r~~~d~~~~~~l~~~~~Dliv~agy~~Il~-------~~~l~~~~~~~iNiHp 111 (211)
T 3p9x_A 61 KTYPS-KEAYEIEVVQQLKEKQIDFVVLAGYMRLVG-------PTLLGAYEGRIVNIHP 111 (211)
T ss_dssp GGSSS-HHHHHHHHHHHHHHTTCCEEEESSCCSCCC-------HHHHHHHTTSEEEEES
T ss_pred hhcCc-hhhhHHHHHHHHHhcCCCEEEEeCchhhcC-------HHHHhhccCCeEEECC
Confidence 1 11 1 35788999999999999987654322 2455555555565554
No 46
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=81.71 E-value=12 Score=27.97 Aligned_cols=66 Identities=14% Similarity=0.222 Sum_probs=47.1
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH---hCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~---~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
....++++ |++++..|..-....+.+.+++++ .+++.||.++.+...+ ..-+.-.+.+||+-|+..
T Consensus 31 a~~~L~~~-Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~L------pgvvA~~t~~PVIgVP~~ 99 (174)
T 3kuu_A 31 AADVLTTL-NVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHL------PGMLAAKTLVPVLGVPVQ 99 (174)
T ss_dssp HHHHHHHT-TCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCH------HHHHHHTCSSCEEEEEEC
T ss_pred HHHHHHHc-CCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhh------HHHHHhccCCCEEEeeCC
Confidence 33444444 899999988766567777777664 5789999998765544 234667789999999753
No 47
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=81.70 E-value=13 Score=27.67 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=47.3
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH---hCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~---~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
....++++ |++++..|..-....+.+.+++++ .+++.||.++.+...+ +.-+...+.+||+-|+..
T Consensus 30 a~~~L~~~-Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~L------pgvvA~~t~~PVIgVP~~ 98 (170)
T 1xmp_A 30 ACDILDEL-NIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHL------PGMVAAKTNLPVIGVPVQ 98 (170)
T ss_dssp HHHHHHHT-TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCH------HHHHHTTCCSCEEEEEEC
T ss_pred HHHHHHHc-CCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhh------HHHHHhccCCCEEEeeCC
Confidence 33444444 899999988765567777777765 4589999998765544 334677889999999864
No 48
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=81.52 E-value=11 Score=29.05 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=62.9
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (211)
|+.++|.|-+-++.....++-.+..-- ..++++.+ |+...+.. .. .+++++ .|+++...
T Consensus 5 m~~~ri~vl~SG~gsnl~all~~~~~~-~l~~~I~~--Visn~~~a-~~----------------l~~A~~-~gIp~~~~ 63 (209)
T 4ds3_A 5 MKRNRVVIFISGGGSNMEALIRAAQAP-GFPAEIVA--VFSDKAEA-GG----------------LAKAEA-AGIATQVF 63 (209)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHTST-TCSEEEEE--EEESCTTC-TH----------------HHHHHH-TTCCEEEC
T ss_pred CCCccEEEEEECCcHHHHHHHHHHHcC-CCCcEEEE--EEECCccc-HH----------------HHHHHH-cCCCEEEe
Confidence 666789999999988877777665322 23345544 44332211 01 122333 37776542
Q ss_pred EeeC-CCH---HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 81 VTEG-DQE---GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 81 v~~G-~~~---~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
-... .+. .+++.+..++.++|++|+...++-.- ..++...+..++=+.+.
T Consensus 64 ~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~il~-------~~~l~~~~~~~iNiHpS 117 (209)
T 4ds3_A 64 KRKDFASKEAHEDAILAALDVLKPDIICLAGYMRLLS-------GRFIAPYEGRILNIHPS 117 (209)
T ss_dssp CGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCCSCCC-------HHHHGGGTTCEEEEESS
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEeccccCcC-------HHHHhhccCCeEEECCc
Confidence 1111 111 36888999999999999987654322 25666666666666553
No 49
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=80.75 E-value=11 Score=28.12 Aligned_cols=66 Identities=9% Similarity=0.086 Sum_probs=45.8
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHH---HhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVR---EIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~---~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
....++++ |++++..|..-....+.+.++++ +.+++.||.++.+...+ ..-+...+.+||+-|+..
T Consensus 25 a~~~l~~~-gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~L------pgvvA~~t~~PVIgVP~~ 93 (169)
T 3trh_A 25 AFTELKSL-GIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHL------AGTIAAHTLKPVIGVPMA 93 (169)
T ss_dssp HHHHHHHT-TCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCH------HHHHHHTCSSCEEEEECC
T ss_pred HHHHHHHc-CCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhh------HHHHHhcCCCCEEEeecC
Confidence 33444444 89999988776545666666654 57889999998765544 234667789999999854
No 50
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=79.62 E-value=14 Score=27.59 Aligned_cols=66 Identities=12% Similarity=0.224 Sum_probs=45.1
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHH---HHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAAL---VREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~---a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
....++++ |++++..|..-....+.+.++ +++.+++.||.++.+...+- .-+...+.+||+-|+..
T Consensus 26 a~~~L~~~-gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp------gvvA~~t~~PVIgVP~~ 94 (174)
T 3lp6_A 26 AAAALAEF-DIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLP------GMVAAATPLPVIGVPVP 94 (174)
T ss_dssp HHHHHHHT-TCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHH------HHHHHHCSSCEEEEEEC
T ss_pred HHHHHHHc-CCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhH------HHHHhccCCCEEEeeCC
Confidence 33444444 899999887755455555555 55678999999987655442 34566789999999753
No 51
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=79.16 E-value=17 Score=26.90 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=47.2
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH---hCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~---~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
....++++ |+.++..|..-....+.+.+++++ .+++.||.++.+...+ ..-+...+.+||+-|+..
T Consensus 24 a~~~l~~~-gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L------pgvvA~~t~~PVIgVP~~ 92 (166)
T 3oow_A 24 CCDILDNL-GIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHL------PGMVAAKTTLPVLGVPVK 92 (166)
T ss_dssp HHHHHHHT-TCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCH------HHHHHHTCSSCEEEEECC
T ss_pred HHHHHHHc-CCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhh------HHHHHhccCCCEEEeecC
Confidence 33444444 889999888766567777777765 4689999998765544 234667789999999863
No 52
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=79.07 E-value=15 Score=27.05 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=46.5
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH---hCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~---~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
....++++ |++++..|..-....+.+.+++++ .+++.||.++.+...+- .-+...+.+||+-|+-.
T Consensus 22 a~~~l~~~-gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp------gvvA~~t~~PVIgVP~~ 90 (163)
T 3ors_A 22 SCNMLDYF-EIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLP------GMVASLTTLPVIGVPIE 90 (163)
T ss_dssp HHHHHHHT-TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH------HHHHHHCSSCEEEEEEC
T ss_pred HHHHHHHc-CCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH------HHHHhccCCCEEEeeCC
Confidence 33444444 899999888766567777777664 56899999987655442 34566789999999753
No 53
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=78.78 E-value=15 Score=27.61 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=47.1
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH---hCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~---~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
....++++ |++++..|..-....+.+.+++++ .+++.||.++.+...+ ..-+.-.+.+||+-|+..
T Consensus 40 a~~~L~~~-Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~L------pgvvA~~t~~PVIgVP~~ 108 (182)
T 1u11_A 40 ADALLTEL-EIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHL------PGMCAAWTRLPVLGVPVE 108 (182)
T ss_dssp HHHHHHHT-TCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCH------HHHHHHHCSSCEEEEEEC
T ss_pred HHHHHHHc-CCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhh------HHHHHhccCCCEEEeeCC
Confidence 33444444 899999988766577777888765 4589999998765544 234667789999999864
No 54
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=78.63 E-value=13 Score=27.30 Aligned_cols=66 Identities=9% Similarity=0.145 Sum_probs=46.2
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHh----CCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREI----GASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~----~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
....++++ |++++..|..-....+.+.+++++. +++.||.++.+...+- .-+...+.+||+-|+..
T Consensus 21 a~~~l~~~-gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lp------gvvA~~t~~PVIgVP~~ 90 (159)
T 3rg8_A 21 IASELKTF-GIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALS------GFVDGFVKGATIACPPP 90 (159)
T ss_dssp HHHHHHHT-TCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHH------HHHHHHSSSCEEECCCC
T ss_pred HHHHHHHc-CCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhH------HHHHhccCCCEEEeeCC
Confidence 33444444 8999998877665677777776542 5899999987655442 34566789999999753
No 55
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=78.13 E-value=24 Score=30.52 Aligned_cols=121 Identities=11% Similarity=0.038 Sum_probs=68.5
Q ss_pred eEEEEe--cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc---------chHHHHHHHHHHHHHHHHHHHHHhhhC
Q 028280 5 KIVVIV--EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR---------NRKKLRLLRLKGYQLALSFKDICNDFF 73 (211)
Q Consensus 5 ~ILv~v--D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~ 73 (211)
.+|+=+ |.--....||..|++ .+..+..|.+.++.... ....... ..+.+..+.+.+++.
T Consensus 7 ~~l~WfrrDLRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~~~~r~~F----l~~sL~~L~~~L~~~- 77 (489)
T 1np7_A 7 TVLVWFRNDLRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNF----LQQSVQNLAESLQKV- 77 (489)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHH----HHHHHHHHHHHHHHT-
T ss_pred cEEEEeCCCCCcchHHHHHHHHh----cCCCEEEEEEECchhhcccccccCCCCHHHHHH----HHHHHHHHHHHHHHC-
Confidence 444444 444455667776654 34578888888763211 1111111 122223333333332
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcCCC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
|+.+ .+..|+ +.+.|.+++++.+++.|+.-..-. ..++ .-.-....+...+|++..+....
T Consensus 78 G~~L--~v~~g~-~~~~l~~l~~~~~~~~V~~~~~~~-~~~~~rd~~v~~~l~~~gi~~~~~~~~~ 139 (489)
T 1np7_A 78 GNKL--LVTTGL-PEQVIPQIAKQINAKTIYYHREVT-QEELDVERNLVKQLTILGIEAKGYWGST 139 (489)
T ss_dssp TCCE--EEEESC-HHHHHHHHHHHTTEEEEEEECCCS-HHHHHHHHHHHHHHHHHTCEEEEECCSS
T ss_pred CCcE--EEEECC-HHHHHHHHHHHcCCCEEEEecccC-HHHHHHHHHHHHHHHhcCCeEEEecCCe
Confidence 5544 456798 999999999999999888874322 2222 22222344556689998876644
No 56
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=78.01 E-value=33 Score=29.60 Aligned_cols=37 Identities=24% Similarity=0.206 Sum_probs=31.1
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~ 43 (211)
.++|+|++.+..+|-.++.|+.+. |.+++.+|+....
T Consensus 10 ~~KVvVA~SGGlDSSvll~~L~e~----G~eViavtvd~Gq 46 (455)
T 1k92_A 10 GQRIGIAFSGGLDTSAALLWMRQK----GAVPYAYTANLGQ 46 (455)
T ss_dssp TSEEEEECCSSHHHHHHHHHHHHT----TCEEEEEEEECCC
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc----CCEEEEEEEEcCC
Confidence 478999999999999999988663 7899999997653
No 57
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=77.83 E-value=4.5 Score=35.82 Aligned_cols=119 Identities=12% Similarity=0.037 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHH
Q 028280 15 AARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAAL 94 (211)
Q Consensus 15 ~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~ 94 (211)
....||..|++.+. .|..|..|.|.++.................+.+..|.+.+++..+......+..|+ +.+.|.++
T Consensus 17 ~DN~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~~~~G~~L~v~~G~-~~~vl~~L 94 (538)
T 3tvs_A 17 HDNPALLAALADKD-QGIALIPVFIFDGESAGTKNVGYNRMRFLLDSLQDIDDQLQAATDGRGRLLVFEGE-PAYIFRRL 94 (538)
T ss_dssp SSCHHHHTTTGGGT-TTCBCCEEEEECSSSSCSTTCCHHHHHHHHHHHHHHHHHGGGSCSSSSCCEEEESC-HHHHHHHH
T ss_pred hhhHHHHHHHHhCC-CCCCEEEEEecChhhhccCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCC-HHHHHHHH
Confidence 34456666665543 45588899999864322100001111112222233333333221003344567899 99999999
Q ss_pred HHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcC
Q 028280 95 VREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 95 a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+++.+++.|+.-.. -....+ --......+...+|++..+..
T Consensus 95 ~~~~~a~~V~~n~~-~~~~~~~RD~~v~~~l~~~gi~~~~~~~ 136 (538)
T 3tvs_A 95 HEQVRLHRICIEQD-CEPIWNERDESIRSLCRELNIDFVEKVS 136 (538)
T ss_dssp HHHHCEEEECEECC-CCGGGHHHHHHHHHHHHHSSCCCCEECC
T ss_pred HHHcCCCEEEEccC-CCHHHHHHHHHHHHHHHhCCceEEEecC
Confidence 99999999986432 222222 222233456667888876654
No 58
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=77.82 E-value=16 Score=31.16 Aligned_cols=95 Identities=15% Similarity=0.157 Sum_probs=60.0
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhcc-CCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLR-FGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~-~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v 81 (211)
-++|+|++.|..+|-.++..+..+... .+.++.++||....... .. +..+.++++|++. |+++.+.-
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~-s~----------~~~~~v~~~~~~l-gi~~~v~~ 80 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSAN-AD----------AWVTHCENVCQQW-QVPLVVER 80 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSS-HH----------HHHHHHHHHHHHT-TCCEEEEC
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcc-cH----------HHHHHHHHHHHHc-CCcEEEEE
Confidence 368999999999999999888887776 78899999997543211 11 1123466677765 77766542
Q ss_pred ee----CCCHH--------HHHHHHHHHhCCCEEEEecCCCC
Q 028280 82 TE----GDQEG--------ARIAALVREIGASALVVGLHDRS 111 (211)
Q Consensus 82 ~~----G~~~~--------~~I~~~a~~~~adLIVmG~~~~~ 111 (211)
.. |.++. ..+.+.++ +++.|++|.|...
T Consensus 81 ~~~~~~~~~~e~~aR~~Ry~~l~~~a~--~~~~i~tgH~~dD 120 (433)
T 1ni5_A 81 VQLAQEGLGIEAQARQARYQAFARTLL--PGEVLVTAQHLDD 120 (433)
T ss_dssp CCCCCSSSTTTTHHHHHHHHHHHHTCC--TTEEEECCCCHHH
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHHh--hCCeEEeeccchH
Confidence 22 22121 11222222 4889999986543
No 59
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=76.02 E-value=11 Score=29.10 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=59.5
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v 81 (211)
++.||.|-+.++.....++-.+..- ..++++.++ +..... . ..+++.+ .|+++...-
T Consensus 11 ~~~ri~vl~SG~gsnl~all~~~~~--~~~~eI~~V--is~~~a--~----------------~~~~A~~-~gIp~~~~~ 67 (215)
T 3da8_A 11 APARLVVLASGTGSLLRSLLDAAVG--DYPARVVAV--GVDREC--R----------------AAEIAAE-ASVPVFTVR 67 (215)
T ss_dssp SSEEEEEEESSCCHHHHHHHHHSST--TCSEEEEEE--EESSCC--H----------------HHHHHHH-TTCCEEECC
T ss_pred CCcEEEEEEeCChHHHHHHHHHHhc--cCCCeEEEE--EeCCch--H----------------HHHHHHH-cCCCEEEeC
Confidence 4668999998988877777665531 345566554 433221 1 1233333 377765531
Q ss_pred eeC-CCH---HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 82 TEG-DQE---GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 82 ~~G-~~~---~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
... .+- .+++.+..++.++|++|+...++-.- ..++...+.-++=+.+
T Consensus 68 ~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~~iL~-------~~~l~~~~~~~iNiHp 119 (215)
T 3da8_A 68 LADHPSRDAWDVAITAATAAHEPDLVVSAGFMRILG-------PQFLSRFYGRTLNTHP 119 (215)
T ss_dssp GGGSSSHHHHHHHHHHHHHTTCCSEEEEEECCSCCC-------HHHHHHHTTTEEEEES
T ss_pred cccccchhhhhHHHHHHHHhhCCCEEEEcCchhhCC-------HHHHhhccCCeEEeCc
Confidence 111 101 35788899999999999987654322 2344444444555543
No 60
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=74.20 E-value=23 Score=26.63 Aligned_cols=67 Identities=15% Similarity=0.284 Sum_probs=46.6
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH---hCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~---~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
....++++ |++++..|..-....+.+.+++++ .+++.||.++.+...+- .-+...+.+||+-|+...
T Consensus 32 a~~~L~~~-Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp------gvvA~~t~~PVIgVP~~~ 101 (183)
T 1o4v_A 32 AAEILEEF-GIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLP------GMVASITHLPVIGVPVKT 101 (183)
T ss_dssp HHHHHHHT-TCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH------HHHHHHCSSCEEEEEECC
T ss_pred HHHHHHHc-CCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccH------HHHHhccCCCEEEeeCCC
Confidence 33444444 899999987755466777777664 56899999987655442 345667899999998643
No 61
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=73.32 E-value=8.1 Score=33.96 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=64.3
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc----------chHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE
Q 028280 11 EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR----------NRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (211)
Q Consensus 11 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (211)
|.--....||..|++. +..|..|.+.++.... .......+ .+.+..+.+.+++. |+.+ .
T Consensus 49 DLRl~DN~AL~~A~~~----~~~v~~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl----~~sL~~L~~~L~~~-G~~L--~ 117 (525)
T 2j4d_A 49 DLRVLDNDALYKAWSS----SDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFL----MECLVDLRKNLMKR-GLNL--L 117 (525)
T ss_dssp CCCSTTCHHHHHHHHT----CSEEEEEEEECGGGGSBCTTTCCBSSCHHHHHHH----HHHHHHHHHHHHHT-TCCC--E
T ss_pred CcCcchhHHHHHHHhc----CCcEEEEEEECchhhcccccccCCCCCHHHHHHH----HHHHHHHHHHHHHc-CCeE--E
Confidence 4444455666666553 4578888888763211 11111111 22223333333332 5544 4
Q ss_pred EeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCC--ceEEEEcCC
Q 028280 81 VTEGDQEGARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFN--CRVLAIKQP 137 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~--~PVLvV~~~ 137 (211)
+..|+ +.+.|.+++++.+++.|+.-..-. ..++ .-......+...+ |++..+...
T Consensus 118 v~~g~-~~~~l~~l~~~~~~~~V~~~~~~~-p~~~~rd~~v~~~l~~~gv~i~~~~~~~~ 175 (525)
T 2j4d_A 118 IRSGK-PEEILPSLAKDFGARTVFAHKETC-SEEVDVERLVNQGLKRVGNSTKLELIWGS 175 (525)
T ss_dssp EEESC-HHHHHHHHHHHHTCSEEEEECCCS-HHHHHHHHHHHHHHHTTCSSCEEEEECCS
T ss_pred EEeCC-HHHHHHHHHHHcCCCEEEEeccCC-HHHHHHHHHHHHHHHhcCCceEEEEecCC
Confidence 46798 999999999999999998874322 2222 2222234455566 898888765
No 62
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=72.05 E-value=29 Score=26.11 Aligned_cols=90 Identities=10% Similarity=0.055 Sum_probs=53.9
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
.+|+|++.|..+|-..+..+.... .++.++|+...... . +. .+.++++++++ |+++.+.-..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~----~~v~~v~vd~g~~~---~--e~--------~~~v~~~~~~~-gi~~~v~~~~ 106 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTGYLF---P--ET--------YRFIDELTDKL-KLNLKVYRAT 106 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS----TTCEEEEEECSCBC---H--HH--------HHHHHHHHHHT-TCEEEEEECS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC----CCCeEEEeeCCCCC---H--HH--------HHHHHHHHHHh-CCcEEEEeCC
Confidence 489999999999988887766653 46788888764321 1 11 22345555554 7776654322
Q ss_pred CC---------CH-----H-----------HHHHHHHHHhCCCEEEEecCCCC
Q 028280 84 GD---------QE-----G-----------ARIAALVREIGASALVVGLHDRS 111 (211)
Q Consensus 84 G~---------~~-----~-----------~~I~~~a~~~~adLIVmG~~~~~ 111 (211)
-. .. . ..+.+++++.+++.+++|.+...
T Consensus 107 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd 159 (215)
T 1sur_A 107 ESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ 159 (215)
T ss_dssp SCHHHHHHHHCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTS
T ss_pred CCHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhh
Confidence 11 00 0 12345666777788888876543
No 63
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=71.79 E-value=46 Score=28.85 Aligned_cols=88 Identities=14% Similarity=0.079 Sum_probs=55.0
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
++++|++.|..+|-.++..+.+. |.++..+|+....... .+ .+...++++++ |+++.+.-..
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~----g~~v~av~vd~g~~~~-~e------------~~~v~~~~~~l-gi~~~vv~~~ 271 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA----GVDHLAVFVDHGLLRL-GE------------REEVEGALRAL-GVNLLVVDAK 271 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH----TCEEEEEEEECSCSCT-TH------------HHHHHHHHHHT-TCCEEEEECH
T ss_pred ccEEEEecCCcchHHHHHHHHHc----CCeEEEEEEeCCCCCh-HH------------HHHHHHHHHHh-CCCEEEEECc
Confidence 68999999999998887776554 7899999986542211 11 12234444443 5665543211
Q ss_pred --------CC-CHH-----------HHHHHHHHHh-CCCEEEEecCC
Q 028280 84 --------GD-QEG-----------ARIAALVREI-GASALVVGLHD 109 (211)
Q Consensus 84 --------G~-~~~-----------~~I~~~a~~~-~adLIVmG~~~ 109 (211)
|. ++. +.+.++|++. +++.|+.|.+.
T Consensus 272 ~~f~~~l~g~~~pe~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~ 318 (503)
T 2ywb_A 272 ERFLKALKGVEDPEEKRKIIGREFVAAFSQVARERGPFRFLAQGTLY 318 (503)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCH
T ss_pred HHHHHhhcCCCChHHHhhhhhHHHHHHHHHHHHhcCCCCEEEECCcC
Confidence 11 121 2345667888 99999999863
No 64
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=71.73 E-value=26 Score=26.93 Aligned_cols=105 Identities=11% Similarity=0.128 Sum_probs=59.2
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
++||.|-+-++.....++-.+..- ...++++ +-|+...+.. .. .+++.+ .|+++...-.
T Consensus 8 ~~ri~vl~SG~gsnl~all~~~~~-~~~~~~I--~~Vis~~~~a-~~----------------l~~A~~-~gIp~~~~~~ 66 (215)
T 3kcq_A 8 ELRVGVLISGRGSNLEALAKAFST-EESSVVI--SCVISNNAEA-RG----------------LLIAQS-YGIPTFVVKR 66 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHTCC-C-CSEEE--EEEEESCTTC-TH----------------HHHHHH-TTCCEEECCB
T ss_pred CCEEEEEEECCcHHHHHHHHHHHc-CCCCcEE--EEEEeCCcch-HH----------------HHHHHH-cCCCEEEeCc
Confidence 458889888888877776665421 1123444 4444432211 01 122333 3777554211
Q ss_pred eCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 83 EGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 83 ~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
... ..+++.+..+++++|+||+...++-.- ..++...+..++=+.+
T Consensus 67 ~~~-~~~~~~~~L~~~~~Dlivlagy~~IL~-------~~~l~~~~~~~iNiHp 112 (215)
T 3kcq_A 67 KPL-DIEHISTVLREHDVDLVCLAGFMSILP-------EKFVTDWHHKIINIHP 112 (215)
T ss_dssp TTB-CHHHHHHHHHHTTCSEEEESSCCSCCC-------HHHHHHTTTSEEEEES
T ss_pred ccC-ChHHHHHHHHHhCCCEEEEeCCceEeC-------HHHHhhccCCeEEECc
Confidence 111 237888999999999999987654322 2455555555665554
No 65
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=71.23 E-value=29 Score=28.95 Aligned_cols=97 Identities=10% Similarity=-0.007 Sum_probs=55.9
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
.++|+|++.+..+|-.++..+.+ .|-++..+|+........... .. ..+-.+.++.+|+.. |+++.+.-.
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~~----~G~~V~~v~~~~~~~~~~~~~-c~----~~~d~~~a~~va~~l-GIp~~vv~~ 78 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLKE----QGYDVIGIFMKNWDDTDENGV-CT----ATEDYKDVVAVADQI-GIPYYSVNF 78 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECCCCCC-----CH----HHHHHHHHHHHHHHH-TCCEEEEEC
T ss_pred CCeEEEEEeCHHHHHHHHHHHHH----cCCcEEEEEEECCCccccccc-CC----CHHHHHHHHHHHHHh-CCcEEEEeC
Confidence 46899999999988877766544 378899999875422110000 00 001122344455444 555554321
Q ss_pred e-----------------CC--CH---------HHHHHHHHHHhCCCEEEEecCC
Q 028280 83 E-----------------GD--QE---------GARIAALVREIGASALVVGLHD 109 (211)
Q Consensus 83 ~-----------------G~--~~---------~~~I~~~a~~~~adLIVmG~~~ 109 (211)
. |. ++ ...+.++|++.++|.|+.|.+.
T Consensus 79 ~~~~~~~v~~~~l~~y~~G~tpnpc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a 133 (376)
T 2hma_A 79 EKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYVATGHYA 133 (376)
T ss_dssp HHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSE
T ss_pred hHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHhCCCCEEEECcch
Confidence 1 11 01 2456788888999999999754
No 66
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=71.15 E-value=4.4 Score=29.08 Aligned_cols=51 Identities=22% Similarity=0.211 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCC-----Ccccc-cccHHHHHHccCCceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDR-----SFLHK-LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~-----~~~~~-~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
..+.|.+++++++++.||+|-... +...+ .-..++.+-...++||..+-+.
T Consensus 41 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~DER 97 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDER 97 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 479999999999999999995421 11111 2234455555568999999653
No 67
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=71.12 E-value=35 Score=26.72 Aligned_cols=39 Identities=5% Similarity=-0.194 Sum_probs=30.4
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
|.+|+|++.|..+|-..+..+..+... +..+.++|+...
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg 79 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTL 79 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCS
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCC
Confidence 457999999999998888877776654 457888888654
No 68
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=69.88 E-value=35 Score=26.10 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=54.6
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
+||+|.+.++.....++-.++.-. ...++ ++-|+...+.. . ..+++.+. |+.+...-..
T Consensus 2 ~rI~vl~SG~g~~~~~~l~~l~~~-~~~~~--i~~Vvs~~~~~--~---------------~~~~A~~~-gIp~~~~~~~ 60 (216)
T 2ywr_A 2 LKIGVLVSGRGSNLQAIIDAIESG-KVNAS--IELVISDNPKA--Y---------------AIERCKKH-NVECKVIQRK 60 (216)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHTT-SSCEE--EEEEEESCTTC--H---------------HHHHHHHH-TCCEEECCGG
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhC-CCCCe--EEEEEeCCCCh--H---------------HHHHHHHc-CCCEEEeCcc
Confidence 689998888876544444343321 12234 44444432211 0 12333333 7765431111
Q ss_pred CC-C---HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 84 GD-Q---EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 84 G~-~---~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.. + -.+++.+..++.++|++|+...++-.- ..++...+..++=+.+
T Consensus 61 ~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~il~-------~~~l~~~~~~~iNiHp 110 (216)
T 2ywr_A 61 EFPSKKEFEERMALELKKKGVELVVLAGFMRILS-------HNFLKYFPNKVINIHP 110 (216)
T ss_dssp GSSSHHHHHHHHHHHHHHTTCCEEEESSCCSCCC-------HHHHTTSTTCEEEEES
T ss_pred cccchhhhhHHHHHHHHhcCCCEEEEeCchhhCC-------HHHHhhccCCeEEEcC
Confidence 10 0 136788888999999999987654221 2455555555555544
No 69
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=68.45 E-value=23 Score=30.68 Aligned_cols=114 Identities=10% Similarity=0.033 Sum_probs=64.1
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCc----cchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCC
Q 028280 11 EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNS----RNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQ 86 (211)
Q Consensus 11 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~ 86 (211)
|.--....||..|.+.. ..|..|.+.++... ........+- +.+..+.+.+++. |+.+ .+..|+
T Consensus 12 DLRl~Dn~aL~~A~~~~----~~v~~vfi~dp~~~~~~~~~~~r~~fl~----~sL~~L~~~L~~~-G~~L--~v~~g~- 79 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQS----AQLIGLFCLDPQILQSADMAPARVAYLQ----GCLQELQQRYQQA-GSRL--LLLQGD- 79 (484)
T ss_dssp CCCSSSCHHHHHHHHHC----SCEEEEEEECHHHHTCTTCCHHHHHHHH----HHHHHHHHHHHHH-TSCE--EEEESC-
T ss_pred CCCcchhHHHHHHHhcC----CCEEEEEEEcchhhcCCCCCHHHHHHHH----HHHHHHHHHHHHC-CCeE--EEEeCC-
Confidence 33334455676666532 36888888875211 1111111122 2222233333333 5544 446799
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+.+.|.+++++.+++.|+.-..-.. ... .-.-....+...+|++..+...
T Consensus 80 ~~~~l~~l~~~~~~~~v~~~~~~~p-~~~~rd~~v~~~l~~~gi~~~~~~~~ 130 (484)
T 1owl_A 80 PQHLIPQLAQQLQAEAVYWNQDIEP-YGRDRDGQVAAALKTAGIRAVQLWDQ 130 (484)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCSH-HHHHHHHHHHHHHHHTTCEEEEECCS
T ss_pred HHHHHHHHHHHcCCCEEEEeccCCh-hHHHHHHHHHHHHHHcCcEEEEecCC
Confidence 9999999999999999988643222 222 2223334556678999888764
No 70
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=68.13 E-value=28 Score=24.41 Aligned_cols=49 Identities=8% Similarity=-0.173 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccC--CceEEEEc
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSF--NCRVLAIK 135 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a--~~PVLvV~ 135 (211)
+.+.+++.++++++|+|.+..........+..+.+.+-... .++|++=-
T Consensus 42 p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 42 PQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp CHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred CHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 88999999999999999999876554433555555543332 36776643
No 71
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=67.95 E-value=38 Score=25.77 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=29.4
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
+|++++|++.+..+|-.++.++.+. +.++..+|+...
T Consensus 1 ~~~kvvv~lSGG~DS~~~l~ll~~~----~~~v~av~~~~g 37 (232)
T 2pg3_A 1 GMKRAVVVFSGGQDSTTCLIQALQD----YDDVHCITFDYG 37 (232)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCCCEEEEecCcHHHHHHHHHHHHc----CCCEEEEEEECC
Confidence 4689999999999999888887664 358888988754
No 72
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=67.65 E-value=55 Score=27.58 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=30.0
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~ 43 (211)
++|+|++.+..+|-.++.|+.+. ++.++..+|+....
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~---~g~~V~av~vd~g~ 37 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKET---YRAEVIAFTADIGQ 37 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHH---HTCEEEEEEEESSC
T ss_pred CcEEEEEeChHHHHHHHHHHHHh---hCCcEEEEEEeCCC
Confidence 57999999999999998887653 36789999997653
No 73
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=67.08 E-value=7 Score=33.32 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=60.8
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHH
Q 028280 11 EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGAR 90 (211)
Q Consensus 11 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~ 90 (211)
|.--....||..|.+. + .+..|.+.++..... . ........+.+..+.+.+++. |+.+ .+..|+ +.+.
T Consensus 11 DlRl~Dn~aL~~A~~~----~-~v~~vfi~d~~~~~~-~--~~r~~fl~~sL~~l~~~L~~~-g~~l--~~~~g~-~~~~ 78 (420)
T 2j07_A 11 DLRLHDHPALLEALAR----G-PVVGLVVLDPNNLKT-T--PRRRAWFLENVRALREAYRAR-GGAL--WVLEGL-PWEK 78 (420)
T ss_dssp CCCSTTCHHHHHHHTT----S-CEEEEEEECHHHHSS-C--HHHHHHHHHHHHHHHHHHHHT-TCCE--EEEESC-HHHH
T ss_pred CCCccccHHHHHHHhC----C-CEEEEEEECCccccC-C--HHHHHHHHHHHHHHHHHHHHC-CCeE--EEEeCC-HHHH
Confidence 4444445566666542 3 688888886521111 1 000111122223333333332 5544 456799 9999
Q ss_pred HHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCCC
Q 028280 91 IAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 91 I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
|.+++++.+++.|+.-..-... .. .....|...++|++..+....
T Consensus 79 l~~l~~~~~~~~v~~~~~~~~~-~~--~rd~~v~~~l~i~~~~~~~~~ 123 (420)
T 2j07_A 79 VPEAARRLKAKAVYALTSHTPY-GR--YRDGRVREALPVPLHLLPAPH 123 (420)
T ss_dssp HHHHHHHTTCSEEEEECCCSHH-HH--HHHHHHHHHCSSCEEEECCCC
T ss_pred HHHHHHHcCCCEEEEecccChh-HH--HHHHHHHHHcCCeEEEeCCCE
Confidence 9999999999999986432221 11 012233333389988886543
No 74
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=66.44 E-value=4.7 Score=30.31 Aligned_cols=110 Identities=11% Similarity=-0.015 Sum_probs=63.7
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v 81 (211)
|+++|++++-|+..+..+++....|.+ .|.+++++-.-......... .++. ..+. + .-
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T~~A~~fi~~~--------------~l~~----l~~~-~--~d 58 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQ-HFDEVNILFSPSSKNFINTD--------------VLKL----FCDN-L--YD 58 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTT-TSSCEEEEECGGGGGTSCGG--------------GGGG----TSSC-E--EC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEchhHHHHHHHH--------------HHHH----HhCC-c--cc
Confidence 678999999999998898888777755 47777665433221111111 0111 1122 1 10
Q ss_pred eeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cc---cHHHHHHccCCceEEEEcC
Q 028280 82 TEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LA---MSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 82 ~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~g---s~a~~vl~~a~~PVLvV~~ 136 (211)
..+. . .+....-...+|++|+..-.-+.+.+ .| +....++....+||++++.
T Consensus 59 ~~~~-~--~~~hi~l~~~aD~~vIaPaTantlAKiA~GiaDnllt~~~la~~~pvvlaPa 115 (181)
T 1g63_A 59 EIKD-P--LLNHINIVENHEYILVLPASANTINKIANGICDNLLTTVCLTGYQKLFIFPN 115 (181)
T ss_dssp TTTC-T--TCCHHHHHHTCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHTGGGEEEEEC
T ss_pred ccCC-C--CCccccccccCCEEEEecCCHHHHHHHHccccCcHHHHHHHHcCCCEEEEeC
Confidence 1111 1 12222112358999999877776666 33 2445555668999999973
No 75
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=65.88 E-value=26 Score=29.59 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=22.3
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEec
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFP 41 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~ 41 (211)
|||++|||. +..+.+.. .+.-+++.|-++.+++..+
T Consensus 4 m~~~kiLI~-g~g~~a~~----i~~aa~~~G~~~v~v~~~~ 39 (446)
T 3ouz_A 4 MEIKSILIA-NRGEIALR----ALRTIKEMGKKAICVYSEA 39 (446)
T ss_dssp TCCCEEEEC-CCHHHHHH----HHHHHHHTTCEEEEEEEGG
T ss_pred cccceEEEE-CCCHHHHH----HHHHHHHcCCEEEEEEcCc
Confidence 899999994 44443332 2333455688877776544
No 76
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=65.60 E-value=26 Score=26.49 Aligned_cols=89 Identities=16% Similarity=0.074 Sum_probs=46.2
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (211)
|+..+++++.|+..-. .+++.+-++ +..+..+.|.... ....+-...+.+++ .+++..+-..
T Consensus 1 ~~~~~~ilalD~~~~~-~~~~~~~~~----~~~v~~~kv~~~~----------f~~~G~~~i~~l~~---~~p~~~v~lD 62 (216)
T 1q6o_A 1 MSLPMLQVALDNQTMD-SAYETTRLI----AEEVDIIEVGTIL----------CVGEGVRAVRDLKA---LYPHKIVLAD 62 (216)
T ss_dssp --CCEEEEEECCSSHH-HHHHHHHHH----GGGCSEEEECHHH----------HHHHCTHHHHHHHH---HCTTSEEEEE
T ss_pred CCcCCeEEEECCCCHH-HHHHHHHHh----cccCCEEEECHHH----------HHHhCHHHHHHHHH---hCCCCeEEEE
Confidence 6777999999997533 333333333 3323344554320 01111122222322 2345555555
Q ss_pred EeeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 81 VTEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
+..++ ......+.+.+.++|+|.+-..
T Consensus 63 ~kl~d-ip~t~~~~~~~~Gad~itvh~~ 89 (216)
T 1q6o_A 63 AKIAD-AGKILSRMCFEANADWVTVICC 89 (216)
T ss_dssp EEECS-CHHHHHHHHHHTTCSEEEEETT
T ss_pred EEecc-cHHHHHHHHHhCCCCEEEEecc
Confidence 55566 5666666777889999988554
No 77
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=65.43 E-value=23 Score=27.16 Aligned_cols=85 Identities=15% Similarity=0.146 Sum_probs=47.4
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
..++.++.|+... ..+++. +...+..+..++|... .....+-...+.+++ .+++..+-..+.
T Consensus 5 ~~~livAlD~~~~-~~a~~~----~~~~~~~~~~ikvg~~----------lf~~~G~~~v~~l~~---~~p~~~iflDlK 66 (221)
T 3exr_A 5 LPNLQVALDHSNL-KGAITA----AVSVGNEVDVIEAGTV----------CLLQVGSELVEVLRS---LFPDKIIVADTK 66 (221)
T ss_dssp CCEEEEEECCSSH-HHHHHH----HHHHGGGCSEEEECHH----------HHHHHCTHHHHHHHH---HCTTSEEEEEEE
T ss_pred CCCEEEEeCCCCH-HHHHHH----HHhhCCCceEEEECHH----------HHHhcCHHHHHHHHH---hCCCCcEEEEEE
Confidence 3479999998763 444444 4444445567777431 111112222222322 234555544555
Q ss_pred eCCCHHHHHHHHHHHhCCCEEEEe
Q 028280 83 EGDQEGARIAALVREIGASALVVG 106 (211)
Q Consensus 83 ~G~~~~~~I~~~a~~~~adLIVmG 106 (211)
..+ ......+.+.+.++|++.+=
T Consensus 67 l~D-ip~t~~~~~~~~Gad~vtVH 89 (221)
T 3exr_A 67 CAD-AGGTVAKNNAVRGADWMTCI 89 (221)
T ss_dssp ECS-CHHHHHHHHHTTTCSEEEEE
T ss_pred eec-cHHHHHHHHHHcCCCEEEEe
Confidence 556 67777777888899998773
No 78
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=64.22 E-value=11 Score=33.41 Aligned_cols=123 Identities=14% Similarity=0.124 Sum_probs=67.0
Q ss_pred CCCCeEEEEe---cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCc-------------cchHHHHHHHHHHHHHHHH
Q 028280 1 MDVKKIVVIV---EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNS-------------RNRKKLRLLRLKGYQLALS 64 (211)
Q Consensus 1 m~~k~ILv~v---D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 64 (211)
|++.++.|.. |..-....||..|++ .+..|..|.|.++... ........ ..+.+..
T Consensus 1 ~~~~~~~lvWFRrDLRl~DN~AL~~A~~----~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~F----l~~sL~~ 72 (537)
T 3fy4_A 1 MATGSGSLIWFRKGLRVHDNPALEYASK----GSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRF----LLESLKD 72 (537)
T ss_dssp ---CCEEEEEESSCCCSTTCHHHHHHHT----TCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHH----HHHHHHH
T ss_pred CCCCCcEEEEeCCCcccchhHHHHHHHh----cCCCEEEEEEeChhhhcccccccccccccCCHHHHHH----HHHHHHH
Confidence 4444433332 554455566766654 3567999999875211 11111111 2222233
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~ 136 (211)
|.+.+++. |.. ..+..|+ +.+.|.+++++.+++.|+.-.. -...+. .-.-....+...+|++..+..
T Consensus 73 L~~~L~~~-G~~--L~v~~G~-~~~vl~~L~~~~~~~~V~~n~~-~~p~~~~RD~~v~~~l~~~gI~~~~~~~ 140 (537)
T 3fy4_A 73 LDSSLKKL-GSR--LLVFKGE-PGEVLVRCLQEWKVKRLCFEYD-TDPYYQALDVKVKDYASSTGVEVFSPVS 140 (537)
T ss_dssp HHHHHHHT-TCC--CEEEESC-HHHHHHHHHTTSCEEEEEECCC-CSHHHHHHHHHHHHHHHHTTCEEECCCC
T ss_pred HHHHHHHc-CCc--eEEEECC-HHHHHHHHHHHcCCCEEEEecc-ccHHHHHHHHHHHHHHHHcCCeEEEecC
Confidence 33333332 433 3556798 9999999999999999988653 222222 222234566677888876654
No 79
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=63.87 E-value=51 Score=28.64 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=64.8
Q ss_pred cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc--chHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee-CCCH
Q 028280 11 EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR--NRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE-GDQE 87 (211)
Q Consensus 11 D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~-G~~~ 87 (211)
|.--....||..|++. + .+..|.+.++.... ....... ....+.+..+.+.+++. |+.+ .+.. |+ +
T Consensus 21 DLRl~DN~aL~~A~~~----~-~v~pvfi~dp~~~~~~~~~~~~~--~fl~~sL~~L~~~L~~~-G~~L--~v~~~g~-~ 89 (509)
T 1u3d_A 21 DLRVEDNPALAAAVRA----G-PVIALFVWAPEEEGHYHPGRVSR--WWLKNSLAQLDSSLRSL-GTCL--ITKRSTD-S 89 (509)
T ss_dssp CCCSTTCHHHHHHHHH----S-CEEEEEEECGGGGTTCCCCHHHH--HHHHHHHHHHHHHHHHT-TCCE--EEEECSC-H
T ss_pred CCccchhHHHHHHHhC----C-CEEEEEEECchhcccCCcchHHH--HHHHHHHHHHHHHHHHC-CCeE--EEEeCCC-H
Confidence 4444455677777664 2 46678888754211 1111111 11223333344444433 5554 3454 57 9
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcCC
Q 028280 88 GARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
.+.|.+++++.+++.|+....- ...+. .-......+...+|++..+...
T Consensus 90 ~~~l~~l~~~~~~~~V~~~~~~-~p~~~~rd~~v~~~l~~~gi~~~~~~~~ 139 (509)
T 1u3d_A 90 VASLLDVVKSTGASQIFFNHLY-DPLSLVRDHRAKDVLTAQGIAVRSFNAD 139 (509)
T ss_dssp HHHHHHHHHHHTCCEEEEECCC-SHHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred HHHHHHHHHHcCCCEEEEeccc-CHHHHHHHHHHHHHHHHcCcEEEEECCC
Confidence 9999999999999999886432 22222 2222345567778999888765
No 80
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=63.04 E-value=55 Score=27.58 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=28.4
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEec
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFP 41 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~ 41 (211)
-.+++|++.|..+|-.++..+.. .|.++..+|+..
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~----~G~~v~av~v~~ 221 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK----RGVSVEAVHFHS 221 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH----BTEEEEEEEEEC
T ss_pred CCeEEEEeCCCChHHHHHHHHHH----cCCcEEEEEEeC
Confidence 35899999999888888777654 478999999974
No 81
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=63.00 E-value=18 Score=30.95 Aligned_cols=111 Identities=11% Similarity=0.009 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCc-----cchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCC
Q 028280 12 DVDAARAALLWALQNLLRFGDVVTLLHVFPSLNS-----RNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQ 86 (211)
Q Consensus 12 ~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~ 86 (211)
..-..-.||..|++ .+..|..|.+.++... ........ ..+.+..+.+.+++. |+.+ .+..|+
T Consensus 11 LRl~DN~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~r~~F----l~~sL~~L~~~L~~~-G~~L--~v~~g~- 78 (440)
T 2e0i_A 11 LRLEDNTGLNYALS----ECDRVIPVFIADPRQLINNPYKSEFAVSF----MINSLLELDDELRKK-GSRL--NVFFGE- 78 (440)
T ss_dssp CCSSSCHHHHHHHH----HSSEEEEEEEECHHHHSSCTTCCHHHHHH----HHHHHHHHHHHHHTT-TCCC--EEEESC-
T ss_pred CccchhHHHHHHHh----cCCCEEEEEEeChhhhccCCcCCHHHHHH----HHHHHHHHHHHHHHc-CCeE--EEEECC-
Confidence 33334456666665 3568999999875311 11111111 112222333333332 4443 456799
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+.+.|.+.++ +++.|+.-..-. .... .-......+...+|++..+...
T Consensus 79 ~~~~l~~l~~--~~~~v~~~~~~~-~~~~~rd~~v~~~l~~~gi~~~~~~~~ 127 (440)
T 2e0i_A 79 AEKVVSRFFN--KVDAIYVNEDYT-PFSISRDEKIRKVCEENGIEFKAYEDY 127 (440)
T ss_dssp HHHHHHHHCT--TCSEEEEECCCS-HHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred HHHHHHHHHc--CCCEEEEecccC-hHHHHHHHHHHHHHHHcCceEEEecCC
Confidence 9999999998 899988864322 2222 2233335566778999888765
No 82
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=62.23 E-value=11 Score=27.48 Aligned_cols=54 Identities=13% Similarity=0.045 Sum_probs=36.5
Q ss_pred eeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccC--CceEEEEc
Q 028280 82 TEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSF--NCRVLAIK 135 (211)
Q Consensus 82 ~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a--~~PVLvV~ 135 (211)
...+.+.+.+++.+++.++|+|.+..........+..+.+.+-... .++|++--
T Consensus 52 lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~L~~~g~~~i~v~vGG 107 (161)
T 2yxb_A 52 TGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAKLRELGADDIPVVLGG 107 (161)
T ss_dssp CCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred CCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 3333478999999999999999999876554433555554443332 37777754
No 83
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=60.99 E-value=50 Score=26.61 Aligned_cols=96 Identities=9% Similarity=0.051 Sum_probs=56.5
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhcc------------------CCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHH
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLR------------------FGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSF 65 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~------------------~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l 65 (211)
.+|+|++.|..+|-..|..+...... .+..+.++|+...... . +. .+..
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~f--p---et--------~~fv 120 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETF--P---TL--------ENFV 120 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCC--H---HH--------HHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCC--H---HH--------HHHH
Confidence 47999999999998888777665321 1456888888654321 1 11 1122
Q ss_pred HHHHhhhCCCcEEEEEee---CCCHHHHHHHHHHHh-CCCEEEEecCCCCcc
Q 028280 66 KDICNDFFNTNVEIIVTE---GDQEGARIAALVREI-GASALVVGLHDRSFL 113 (211)
Q Consensus 66 ~~~~~~~~~i~~~~~v~~---G~~~~~~I~~~a~~~-~adLIVmG~~~~~~~ 113 (211)
.++++++ |+++.+.-.. +....+.+.++++.. ..+.|++|.+.....
T Consensus 121 ~~~~~~y-gl~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdds~ 171 (306)
T 2wsi_A 121 LETSERY-CLSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTDPF 171 (306)
T ss_dssp HHHHHHT-TEEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCSSS
T ss_pred HHHHHHc-CCCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccccc
Confidence 3333333 5554332111 122667777887773 688999998865443
No 84
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=60.81 E-value=64 Score=25.96 Aligned_cols=95 Identities=16% Similarity=0.242 Sum_probs=54.6
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
++++|++.|..+|-.++..+.+. .|.++..+|+....... .. .+.+.+.+.+.-|+++...-..
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~---~g~~v~av~vd~g~~~~-~e------------~~~~~~~~a~~lgi~~~vv~~~ 84 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKA---IGDRLHAVFVNTGFLRK-GE------------PEFVVKTFRDEFGMNLHYVDAQ 84 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECSCCCT-TH------------HHHHHHHHTTTTCCEEEEEECH
T ss_pred CCEEEEEeChHHHHHHHHHHHHh---hCCCEEEEEEcCCCCCh-HH------------HHHHHHHHHHHcCCcEEEEECC
Confidence 68999999999998887776654 25678899987543211 11 0112332222125555443211
Q ss_pred --------C-CCHH-----------HHHHHHHHHhCCCEEEEecCCCCccc
Q 028280 84 --------G-DQEG-----------ARIAALVREIGASALVVGLHDRSFLH 114 (211)
Q Consensus 84 --------G-~~~~-----------~~I~~~a~~~~adLIVmG~~~~~~~~ 114 (211)
| .++. ..+.+.|++.+++.|+.|.+.....+
T Consensus 85 ~~f~~~l~~~~~pe~~~~~~~~~~~~~l~~~A~~~g~~~la~Gh~~dD~~E 135 (308)
T 2dpl_A 85 DRFFSALKGVTDPEEKRKIIGRVFIEVFEEVAKKIGAEYLIQGTIAPDWIE 135 (308)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTCSEEECCCCCC----
T ss_pred HHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHcCcCEEEECCCCccchh
Confidence 1 1132 23456888899999999987654433
No 85
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=60.76 E-value=54 Score=25.11 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=59.5
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
+||.|-+.++.....++-.+...- .+.++.+| +...+.. .. .+++.+ .|+.+...-..
T Consensus 6 ~riavl~SG~Gsnl~all~~~~~~--~~~eI~~V--is~~~~a-~~----------------~~~A~~-~gIp~~~~~~~ 63 (215)
T 3tqr_A 6 LPIVVLISGNGTNLQAIIGAIQKG--LAIEIRAV--ISNRADA-YG----------------LKRAQQ-ADIPTHIIPHE 63 (215)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHTT--CSEEEEEE--EESCTTC-HH----------------HHHHHH-TTCCEEECCGG
T ss_pred cEEEEEEeCCcHHHHHHHHHHHcC--CCCEEEEE--EeCCcch-HH----------------HHHHHH-cCCCEEEeCcc
Confidence 478888889888877777665533 44555544 4332211 00 122333 37775542111
Q ss_pred --CC--CHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 84 --GD--QEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 84 --G~--~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+ .-.+++.+..++.++|+||+...++-.- ..++...+..++=+.+
T Consensus 64 ~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~il~-------~~~l~~~~~~~iNiHp 113 (215)
T 3tqr_A 64 EFPSRTDFESTLQKTIDHYDPKLIVLAGFMRKLG-------KAFVSHYSGRMINIHP 113 (215)
T ss_dssp GSSSHHHHHHHHHHHHHTTCCSEEEESSCCSCCC-------HHHHHHTTTSEEEEES
T ss_pred ccCchhHhHHHHHHHHHhcCCCEEEEccchhhCC-------HHHHhhccCCeEEeCc
Confidence 11 0136788999999999999987654322 2455555555665554
No 86
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=59.22 E-value=9.8 Score=28.40 Aligned_cols=110 Identities=9% Similarity=-0.026 Sum_probs=63.0
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (211)
||.|+|++++-++-.+..+++..-.|.+ .|.+++++-.-......... .++.+. + ++...
T Consensus 3 ~m~k~IllgvTGs~aa~k~~~ll~~L~~-~g~~V~vv~T~~A~~fi~~~--------------~l~~l~----~-~v~~~ 62 (175)
T 3qjg_A 3 AMGENVLICLCGSVNSINISHYIIELKS-KFDEVNVIASTNGRKFINGE--------------ILKQFC----D-NYYDE 62 (175)
T ss_dssp --CCEEEEEECSSGGGGGHHHHHHHHTT-TCSEEEEEECTGGGGGSCHH--------------HHHHHC----S-CEECT
T ss_pred CCCCEEEEEEeCHHHHHHHHHHHHHHHH-CCCEEEEEECcCHHHHhhHH--------------HHHHhc----C-CEEec
Confidence 4568999999999998888887666555 57776655432211111111 122222 2 21111
Q ss_pred EeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cc--c-HHHHHHccCCceEEEEc
Q 028280 81 VTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LA--M-SHNDISSSFNCRVLAIK 135 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~g--s-~a~~vl~~a~~PVLvV~ 135 (211)
. + + ..-..+..+ ..+|++|+..-.-+.+.+ .| . ....++....+||++++
T Consensus 63 ~-~-~-~~~~hi~l~--~~aD~~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~P 117 (175)
T 3qjg_A 63 F-E-D-PFLNHVDIA--NKHDKIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFP 117 (175)
T ss_dssp T-T-C-TTCCHHHHH--HTCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEEE
T ss_pred C-C-C-Ccccccccc--chhCEEEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEEe
Confidence 1 1 1 222233333 358999999877766665 22 2 45557777899999997
No 87
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=59.17 E-value=20 Score=28.36 Aligned_cols=47 Identities=6% Similarity=0.062 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
.-+++.++++++|++|+.+.....-. ..-+..++.....|.+||...
T Consensus 54 ~~~~~~~~~~~pDfvI~isPN~a~PG--P~~ARE~l~~~~iP~IvI~D~ 100 (283)
T 1qv9_A 54 EMALDIAEDFEPDFIVYGGPNPAAPG--PSKAREMLADSEYPAVIIGDA 100 (283)
T ss_dssp HHHHHHHHHHCCSEEEEECSCTTSHH--HHHHHHHHHTSSSCEEEEEEG
T ss_pred HHhhhhhhhcCCCEEEEECCCCCCCC--chHHHHHHHhCCCCEEEEcCC
Confidence 34456679999999999986544321 235778999999999999754
No 88
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=59.03 E-value=19 Score=31.08 Aligned_cols=109 Identities=8% Similarity=-0.040 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhccCCCEEEEEEEecCCCc----cchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe--eCCCHHHH
Q 028280 17 RAALLWALQNLLRFGDVVTLLHVFPSLNS----RNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT--EGDQEGAR 90 (211)
Q Consensus 17 ~~al~~A~~la~~~~a~l~llhV~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~--~G~~~~~~ 90 (211)
..||..|++. ..+ .|..|.|.++... ........ ..+.+..+.+.+++. |+.+.+... .|+ +.+.
T Consensus 16 N~aL~~A~~~--~~~-~v~~vfi~dp~~~~~~~~~~~r~~f----l~~sL~~L~~~L~~~-G~~L~v~~~~~~g~-~~~~ 86 (471)
T 1dnp_A 16 NLALAAACRN--SSA-RVLALYIATPRQWATHNMSPRQAEL----INAQLNGLQIALAEK-GIPLLFREVDDFVA-SVEI 86 (471)
T ss_dssp CHHHHHHSSS--TTS-EEEEEEEECHHHHHHTTCCHHHHHH----HHHHHHHHHHHHHHT-TCCEEEEECSSHHH-HHHH
T ss_pred hHHHHHHHhC--CCC-CEEEEEEECchhhccCCCCHHHHHH----HHHHHHHHHHHHHHC-CCeEEEEEccCCCC-HHHH
Confidence 3455555542 133 8999999875211 11111111 112222333333333 555544222 688 9999
Q ss_pred HHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCC-ceEEEEcCC
Q 028280 91 IAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFN-CRVLAIKQP 137 (211)
Q Consensus 91 I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~-~PVLvV~~~ 137 (211)
|.+++++.+++.|+.-..-.. ... .....|...+. |++..+...
T Consensus 87 l~~l~~~~~~~~v~~~~~~~~-~~~--~rd~~v~~~l~~i~~~~~~~~ 131 (471)
T 1dnp_A 87 VKQVCAENSVTHLFYNYQYEV-NER--ARDVEVERALRNVVCEGFDDS 131 (471)
T ss_dssp HHHHHHHHTCCEEEEECCCSH-HHH--HHHHHHHHHCTTSEEEEECCS
T ss_pred HHHHHHHcCCCEEEEecccCc-hHH--HHHHHHHHHhcCcEEEEecCC
Confidence 999999999999988643222 121 01122222222 888877654
No 89
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=57.96 E-value=74 Score=25.75 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=60.3
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE-
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV- 81 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v- 81 (211)
.+||+|-+.++..+..+|-++...- ..++++.++-... +. +..++.+ .|+++...-
T Consensus 105 ~~ri~vl~Sg~g~nl~~ll~~~~~g-~l~~~I~~Visn~--~~-------------------~~~~A~~-~gIp~~~~~~ 161 (302)
T 3o1l_A 105 KKRVVLMASRESHCLADLLHRWHSD-ELDCDIACVISNH--QD-------------------LRSMVEW-HDIPYYHVPV 161 (302)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHTT-CSCSEEEEEEESS--ST-------------------THHHHHT-TTCCEEECCC
T ss_pred CcEEEEEEeCCchhHHHHHHHHHCC-CCCcEEEEEEECc--HH-------------------HHHHHHH-cCCCEEEcCC
Confidence 4688888888877777777765432 2456665544332 21 1122333 377765431
Q ss_pred eeCCCH--HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 82 TEGDQE--GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 82 ~~G~~~--~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
...+.. .+++.+..++.++|+||+...++-.-. .++...+-.++=+.+
T Consensus 162 ~~~~r~~~~~~~~~~l~~~~~DliVlagym~IL~~-------~~l~~~~~~~INiHp 211 (302)
T 3o1l_A 162 DPKDKEPAFAEVSRLVGHHQADVVVLARYMQILPP-------QLCREYAHQVINIHH 211 (302)
T ss_dssp CSSCCHHHHHHHHHHHHHTTCSEEEESSCCSCCCT-------THHHHTTTCEEEEES
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEHhHhhhhcCH-------HHHhhhhCCeEEeCc
Confidence 111212 357889999999999999876543222 355555555555554
No 90
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=57.46 E-value=5.2 Score=29.08 Aligned_cols=53 Identities=11% Similarity=0.193 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCC-Ccccc-----cccHHHHHHccCCceEEEEcCCCC
Q 028280 87 EGARIAALVREIGASALVVGLHDR-SFLHK-----LAMSHNDISSSFNCRVLAIKQPAA 139 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~-~~~~~-----~gs~a~~vl~~a~~PVLvV~~~~~ 139 (211)
..+.|.+++++++++.||+|-.-. ++... .-..+..+....++||..+.+...
T Consensus 43 ~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDEr~T 101 (150)
T 1vhx_A 43 GLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDERLT 101 (150)
T ss_dssp CHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCSSC
T ss_pred HHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecCCCC
Confidence 689999999999999999995421 11111 112444555556899999976433
No 91
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=57.25 E-value=16 Score=27.50 Aligned_cols=118 Identities=13% Similarity=0.050 Sum_probs=60.3
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
|++|++++-|+-.+..+++..-.|.+. |.+++++-.- ........+. ...+..+.....+ .....
T Consensus 1 mk~IllgvTGs~aa~k~~~l~~~L~~~-g~~V~vv~T~--------~A~~~i~~e~---~~~~~~l~~~l~~---~~v~~ 65 (189)
T 2ejb_A 1 MQKIALCITGASGVIYGIKLLQVLEEL-DFSVDLVISR--------NAKVVLKEEH---SLTFEEVLKGLKN---VRIHE 65 (189)
T ss_dssp CCEEEEEECSSTTHHHHHHHHHHHHHT-TCEEEEEECH--------HHHHHHHHC----------CCCCCSS---EEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEECh--------hHHHHhhHHh---CCCHHHHHHHhCC---CeEec
Confidence 389999999998888888877777654 7777655321 1111111100 0001111000101 11112
Q ss_pred eCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cc--c-HHHHHHccC---CceEEEEcC
Q 028280 83 EGDQEGARIAALVREIGASALVVGLHDRSFLHK--LA--M-SHNDISSSF---NCRVLAIKQ 136 (211)
Q Consensus 83 ~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~g--s-~a~~vl~~a---~~PVLvV~~ 136 (211)
.++ ....|.-..-...+|++|+..-.-+.+.+ .| . .....+..+ .+|+++++.
T Consensus 66 ~~~-~~~hi~~~s~~~~aD~mvIaPaTanTlAkiA~GiaDnLlt~~a~~~lk~~~plvl~Pa 126 (189)
T 2ejb_A 66 END-FTSPLASGSRLVHYRGVYVVPCSTNTLSCIANGINKNLIHRVGEVALKERVPLVLLVR 126 (189)
T ss_dssp TTC-TTSGGGCHHHHTTEEEEEEEEECHHHHHHHHHTCCSSHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCC-CcCCccccccccccCEEEEecCCHHHHHHHHcCcCCcHHHHHHHHHccCCCcEEEEEC
Confidence 233 44433322112568999888877666655 22 2 333443333 899999986
No 92
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=56.52 E-value=20 Score=26.98 Aligned_cols=52 Identities=8% Similarity=0.079 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccC---CceEEEEcC
Q 028280 85 DQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSF---NCRVLAIKQ 136 (211)
Q Consensus 85 ~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a---~~PVLvV~~ 136 (211)
+.+.+.+++.+++.++|+|.+..........+..+.+.+-+.. .+||++--.
T Consensus 125 ~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~~~v~vGG~ 179 (210)
T 1y80_A 125 DIEPGKFVEAVKKYQPDIVGMSALLTTTMMNMKSTIDALIAAGLRDRVKVIVGGA 179 (210)
T ss_dssp SBCHHHHHHHHHHHCCSEEEEECCSGGGTHHHHHHHHHHHHTTCGGGCEEEEEST
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEECC
Confidence 3389999999999999999998865443332444444443332 288887643
No 93
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=56.08 E-value=95 Score=26.44 Aligned_cols=37 Identities=16% Similarity=0.045 Sum_probs=29.0
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
|-++|+|+..+.-+|-.++.|+.+ .|.+++.+++...
T Consensus 13 ~~~KVVVA~SGGlDSSv~a~~Lke----~G~eViavt~d~G 49 (421)
T 1vl2_A 13 MKEKVVLAYSGGLDTSVILKWLCE----KGFDVIAYVANVG 49 (421)
T ss_dssp -CCEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEESS
T ss_pred ccCCEEEEeCCcHHHHHHHHHHHH----CCCeEEEEEEEcC
Confidence 457899999999999888888754 3788988888754
No 94
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=56.01 E-value=40 Score=25.51 Aligned_cols=89 Identities=18% Similarity=0.164 Sum_probs=40.8
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (211)
|...++.++.|+.. -+.+++.+-.+. ..+.++.+.-+. .-..+-+. ++++.+.+++..+-..
T Consensus 4 m~~~~lilalD~~~-~~~~~~~~~~~~----~~vd~ie~g~~~----------~~~~G~~~---i~~lr~~~~~~~i~ld 65 (218)
T 3jr2_A 4 MTKPMIQIALDQTN-LTDAVAVASNVA----SYVDVIEVGTIL----------AFAEGMKA---VSTLRHNHPNHILVCD 65 (218)
T ss_dssp -CCCEEEEEECCSS-HHHHHHHHHHHG----GGCSEEEECHHH----------HHHHTTHH---HHHHHHHCTTSEEEEE
T ss_pred CCCCCeEEEeCCCC-HHHHHHHHHHhc----CCceEEEeCcHH----------HHhcCHHH---HHHHHHhCCCCcEEEE
Confidence 66788999999864 233344443332 134455553210 00011111 2222222233333222
Q ss_pred EeeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 81 VTEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
+...+ .....++.+.+.++|.|++=..
T Consensus 66 ~~l~d-~p~~~~~~~~~aGad~i~vh~~ 92 (218)
T 3jr2_A 66 MKTTD-GGAILSRMAFEAGADWITVSAA 92 (218)
T ss_dssp EEECS-CHHHHHHHHHHHTCSEEEEETT
T ss_pred Eeecc-cHHHHHHHHHhcCCCEEEEecC
Confidence 22223 3344556667778888877543
No 95
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=55.77 E-value=24 Score=30.93 Aligned_cols=90 Identities=10% Similarity=0.086 Sum_probs=53.7
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
++++|++.|..+|-.++..+.+. .|.+++.+|+....... . +..+..+.+|+.+ |+++.+.-..
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~---~G~~v~av~vd~g~~~~--~----------e~~~~~~~~a~~l-gi~~~vv~~~ 294 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA---IGDQLVCVLVDTGLLRL--N----------EVDEVLNVFQKHL-GAKVICVDAK 294 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH---HGGGEEEEEECCSCSCT--T----------HHHHHHHHHTTSS-CCEEEEECCH
T ss_pred CeEEEEEecCcCHHHHHHHHHHH---hCCeEEEEEeccCCCCh--h----------HHHHHHHHHHHHc-CCcEEEEeCh
Confidence 68999999999998887766554 35689999986543211 1 1111223355543 6655543111
Q ss_pred --------C-CCHHH-----------HHHHHHHHhCCCEEEEecCC
Q 028280 84 --------G-DQEGA-----------RIAALVREIGASALVVGLHD 109 (211)
Q Consensus 84 --------G-~~~~~-----------~I~~~a~~~~adLIVmG~~~ 109 (211)
| .++.. .+.++|++.+++.|+.|.+-
T Consensus 295 ~~~~~~l~g~~~~~~~r~~~~~~~~~~~~~~A~~~g~~~la~Gh~~ 340 (527)
T 3tqi_A 295 DRFMKALKGISDPEEKRKIAGEQFIRVFEEQAKKLNVKWLGQGTIY 340 (527)
T ss_dssp HHHHSSSSSCCCHHHHHHHHHHHHHHHHHHTTTTTTCCEEECCCCH
T ss_pred HHHHHhhcCCCChhhhhhhhHHHHHHHHHHHHHHcCCCEEEccccC
Confidence 1 11322 13466778899999999854
No 96
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=54.68 E-value=83 Score=25.34 Aligned_cols=86 Identities=19% Similarity=0.207 Sum_probs=48.8
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
.+++|++.+ -+|--|+.. +.+.|.++..+|.... . . ..+...++.+.+..+. -..++++.+ ..
T Consensus 180 ~kvlvllSG-vDS~vaa~l----l~~~G~~v~~v~~~~~-~----~----~~~~a~~~a~~l~~~~-~~~~i~~~v--v~ 242 (307)
T 1vbk_A 180 GRMIGILHD-ELSALAIFL----MMKRGVEVIPVYIGKD-D----K----NLEKVRSLWNLLKRYS-YGSKGFLVV--AE 242 (307)
T ss_dssp CEEEEECSS-HHHHHHHHH----HHHBTCEEEEEEESCS-S----H----HHHHHHHHHHHHHTTC-TTSCCCCEE--ES
T ss_pred CcEEEEEeC-CcHHHHHHH----HHhCCCeEEEEEEEEC-H----H----HHHHHHHHHHHHhhhc-cCCCCcEEE--eC
Confidence 589999988 877655443 3446899999999721 1 1 1111122222221100 011444433 32
Q ss_pred CCCHHHHHHHHHHHhCCCEEEEecCC
Q 028280 84 GDQEGARIAALVREIGASALVVGLHD 109 (211)
Q Consensus 84 G~~~~~~I~~~a~~~~adLIVmG~~~ 109 (211)
. ...+.++|++.++|.|+.|.+.
T Consensus 243 -~--~~~~~~~A~~~ga~~I~tG~~~ 265 (307)
T 1vbk_A 243 -S--FDRVLKLIRDFGVKGVIKGLRP 265 (307)
T ss_dssp -S--HHHHHHHHHHHTCCEEECCCCG
T ss_pred -C--CHHHHHHHHHcCCCEEEECccc
Confidence 0 3344489999999999999763
No 97
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=53.86 E-value=67 Score=24.64 Aligned_cols=34 Identities=6% Similarity=0.065 Sum_probs=24.1
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEec
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFP 41 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~ 41 (211)
+.++.++.|+... +.++.++...+..+..+|+..
T Consensus 12 ~~~lilAlD~~~~-----~~a~~~v~~~~~~v~~~Kvg~ 45 (228)
T 3m47_A 12 MNRLILAMDLMNR-----DDALRVTGEVREYIDTVKIGY 45 (228)
T ss_dssp GGGEEEECCCCSH-----HHHHHHHHTTTTTCSEEEEEH
T ss_pred CCCeEEEeCCCCH-----HHHHHHHHHcCCcccEEEEcH
Confidence 3579999998763 355666666676677888854
No 98
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=53.73 E-value=85 Score=25.20 Aligned_cols=104 Identities=12% Similarity=0.141 Sum_probs=61.8
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
.+||+|-+.++..+..+|-++.+.- ..++++.++-. ..+.. ..++.+ .|+++...-.
T Consensus 95 ~~ri~vl~Sg~g~~l~~ll~~~~~g-~l~~~i~~Vis--n~~~~-------------------~~~A~~-~gIp~~~~~~ 151 (292)
T 3lou_A 95 RPKVLIMVSKLEHCLADLLFRWKMG-ELKMDIVGIVS--NHPDF-------------------APLAAQ-HGLPFRHFPI 151 (292)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHHT-SSCCEEEEEEE--SSSTT-------------------HHHHHH-TTCCEEECCC
T ss_pred CCEEEEEEcCCCcCHHHHHHHHHcC-CCCcEEEEEEe--CcHHH-------------------HHHHHH-cCCCEEEeCC
Confidence 4688888888888888877765543 34566655433 32211 112333 3777655211
Q ss_pred eCCCH---HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 83 EGDQE---GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 83 ~G~~~---~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
...+- .+++.+..+++++|+||+...++-.- ..++...+..++=+.+
T Consensus 152 ~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~il~-------~~~l~~~~~~~iNiHp 201 (292)
T 3lou_A 152 TADTKAQQEAQWLDVFETSGAELVILARYMQVLS-------PEASARLANRAINIHH 201 (292)
T ss_dssp CSSCHHHHHHHHHHHHHHHTCSEEEESSCCSCCC-------HHHHHHTTTSEEEEEE
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEecCchhhCC-------HHHHhhhcCCeEEeCC
Confidence 11112 24788999999999999987654322 2556666555555554
No 99
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=53.02 E-value=86 Score=25.06 Aligned_cols=104 Identities=12% Similarity=0.177 Sum_probs=61.6
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
.+||+|-+.++..+..+|-++.+.- ..++++.++-... +. +..++.+ .|+++...-.
T Consensus 90 ~~ri~vl~Sg~g~~l~~ll~~~~~g-~l~~~i~~Visn~--~~-------------------~~~~A~~-~gIp~~~~~~ 146 (286)
T 3n0v_A 90 RPKVVIMVSKADHCLNDLLYRQRIG-QLGMDVVAVVSNH--PD-------------------LEPLAHW-HKIPYYHFAL 146 (286)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHTT-SSCCEEEEEEESS--ST-------------------THHHHHH-TTCCEEECCC
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHCC-CCCcEEEEEEeCc--HH-------------------HHHHHHH-cCCCEEEeCC
Confidence 4578888888888777777765432 3456665544432 21 1112333 3777654211
Q ss_pred eCCCH---HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 83 EGDQE---GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 83 ~G~~~---~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
...+- .+++.+..+++++|+||+...++-.- ..++...+..++=+.+
T Consensus 147 ~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~il~-------~~~l~~~~~~~iNiHp 196 (286)
T 3n0v_A 147 DPKDKPGQERKVLQVIEETGAELVILARYMQVLS-------PELCRRLDGWAINIHH 196 (286)
T ss_dssp BTTBHHHHHHHHHHHHHHHTCSEEEESSCCSCCC-------HHHHHHTTTSEEEEEE
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEecccccccC-------HHHHhhhcCCeEEecc
Confidence 11112 34688999999999999987654322 2566666666666654
No 100
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=52.36 E-value=22 Score=24.13 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=36.1
Q ss_pred HHHHHhhhCCCcEEEEE-eeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 65 FKDICNDFFNTNVEIIV-TEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v-~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+++.+++. |+++++.- ..+. ..+ .. .++|+|++|.+-+..+.. ........++||.+|+.
T Consensus 26 m~~~a~~~-gi~v~i~a~~~~~-~~~----~~--~~~DvvLLgPQV~y~~~~----ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 26 INEGANLT-EVRVIANSGAYGA-HYD----IM--GVYDLIILAPQVRSYYRE----MKVDAERLGIQIVATRG 86 (108)
T ss_dssp HHHHHHHH-TCSEEEEEEETTS-CTT----TG--GGCSEEEECGGGGGGHHH----HHHHHTTTTCEEEECCH
T ss_pred HHHHHHHC-CCceEEEEcchHH-HHh----hc--cCCCEEEEChHHHHHHHH----HHHHhhhcCCcEEEeCH
Confidence 44444443 77777754 2333 222 22 358999999986654432 23445566899999975
No 101
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=52.18 E-value=67 Score=27.44 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=43.1
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHH---HhCC-CEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVR---EIGA-SALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~---~~~a-dLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
....++.+ |++++..|..-....+.+.++++ +.++ +.||.|+.+...+ +.-|...+.+||+-|+..
T Consensus 284 a~~~l~~~-gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~L------pgvva~~t~~PVIgvP~~ 353 (425)
T 2h31_A 284 IKKACGNF-GIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGL------GPVMSGNTAYPVISCPPL 353 (425)
T ss_dssp HHHHHHHT-TCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCH------HHHHHHHCSSCEEECCCC
T ss_pred HHHHHHHc-CCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccch------HhHHhccCCCCEEEeeCc
Confidence 33344444 88899988775545555555554 5667 5888887665443 234566789999999864
No 102
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=51.85 E-value=1e+02 Score=25.63 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=55.7
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
-++|+|++.+..+|-.++..+. +.|-++..+|+........... . ...+-.+.++.+|+.. |+++.+.-.
T Consensus 17 ~~kVvVa~SGGvDSsv~a~lL~----~~G~~V~~v~~~~~~~~~~~~~-~----~s~~d~~~a~~va~~L-GIp~~vvd~ 86 (380)
T 2der_A 17 AKKVIVGMSGGVDSSVSAWLLQ----QQGYQVEGLFMKNWEEDDGEEY-C----TAAADLADAQAVCDKL-GIELHTVNF 86 (380)
T ss_dssp CCEEEEECCSCSTTHHHHHHHH----TTCCEEEEEEEECCCCCSHHHH-H----HHHHHHHHHHHHHHHH-TCCEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHH----HcCCeEEEEEEEcCccccccCC-C----CCHHHHHHHHHHHHHc-CCcEEEEeC
Confidence 3589999998888776665543 3478999999864322110010 0 0011123455555554 666555422
Q ss_pred e-----------------CC--CH---------HHHHHHHHHH-hCCCEEEEecCC
Q 028280 83 E-----------------GD--QE---------GARIAALVRE-IGASALVVGLHD 109 (211)
Q Consensus 83 ~-----------------G~--~~---------~~~I~~~a~~-~~adLIVmG~~~ 109 (211)
. |. ++ ...+.++|++ .++|.|+.|.+.
T Consensus 87 ~~~f~~~v~~~~~~ey~~G~tpnpc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a 142 (380)
T 2der_A 87 AAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYV 142 (380)
T ss_dssp HHHHHHHTHHHHHHHHHTTCCCCHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSC
T ss_pred cHHHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHhhcCCCEEEEcccc
Confidence 1 11 11 2355677888 899999999654
No 103
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=50.92 E-value=79 Score=23.98 Aligned_cols=106 Identities=10% Similarity=0.140 Sum_probs=60.4
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
++|.|-+.++..+-.+|-.+...- ..+.+|.+|-..++... . .+.+.+ .|+++...-..
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~~-~~~~~I~~Vvs~~~~~~---~----------------~~~A~~-~gIp~~~~~~~ 59 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTREP-NSSAQIDIVISNKAAVA---G----------------LDKAER-AGIPTRVINHK 59 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHST-TCSCEEEEEEESSTTCH---H----------------HHHHHH-TTCCEEECCGG
T ss_pred CeEEEEEECCchHHHHHHHHHhcC-CCCcEEEEEEeCCCChH---H----------------HHHHHH-cCCCEEEECcc
Confidence 478888888888777776554322 23556655544432111 0 123333 37776532111
Q ss_pred --CC--CHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 84 --GD--QEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 84 --G~--~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
.+ ...+++.+..++.++|+||+...++-.- ..++...+..++-+.+.
T Consensus 60 ~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~~il~-------~~~l~~~~~~~iNiHpS 110 (209)
T 1meo_A 60 LYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILS-------GPFVQKWNGKMLNIHPS 110 (209)
T ss_dssp GSSSHHHHHHHHHHHHHHTTCCEEEEESCCSCCC-------HHHHHHTTTSEEEEESS
T ss_pred ccCchhhhhHHHHHHHHhcCCCEEEEcchhhhCC-------HHHHhhhcCCEEEEccC
Confidence 11 0125788888999999999987654322 25666666666666653
No 104
>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}
Probab=47.34 E-value=74 Score=27.30 Aligned_cols=93 Identities=12% Similarity=0.053 Sum_probs=57.0
Q ss_pred CeEEEEecCCHH-HHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhh-hCCCcEEEEE
Q 028280 4 KKIVVIVEDVDA-ARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICND-FFNTNVEIIV 81 (211)
Q Consensus 4 k~ILv~vD~s~~-s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~i~~~~~v 81 (211)
.++.|++|.... .....+++..++...+..+..+-+.- +.....+-+..+.+++.++. ..|..+=...
T Consensus 15 ~~l~vaLD~~~~~~~~~~~~a~~~v~~~~~~v~~~Kvg~----------~lf~~~G~~~v~~L~~~~~~~~~g~~VflDl 84 (453)
T 3qw4_B 15 SLLCVGLDPRAKTAAAAVEECKRLIEQTHEYAAAYKPNA----------AFFEFFGAEGWAALSEVIRAVPAGIPVVLDA 84 (453)
T ss_dssp CCEEEEECCCCSSHHHHHHHHHHHHHHHGGGCSEEEEBH----------HHHHTTHHHHHHHHHHHHHTSCTTSCBEEEE
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHHhCCcCcEEEEcH----------HHHHhcCHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 468899997653 55667778888877766655554432 22222233333445554432 2366666677
Q ss_pred eeCCCHHHHHHHHHHH----hCCCEEEEec
Q 028280 82 TEGDQEGARIAALVRE----IGASALVVGL 107 (211)
Q Consensus 82 ~~G~~~~~~I~~~a~~----~~adLIVmG~ 107 (211)
..|| +......+++. .++|++-+-.
T Consensus 85 K~~D-IpnT~~~~a~~~~~~lg~d~vTvh~ 113 (453)
T 3qw4_B 85 KRGD-IADTADAYATSAFKHLNAHAITASP 113 (453)
T ss_dssp EECC-CHHHHHHHHHHHHTTSCCSEEEECS
T ss_pred ecCC-hHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 7788 87777666554 6789988843
No 105
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=47.21 E-value=96 Score=23.89 Aligned_cols=106 Identities=14% Similarity=0.113 Sum_probs=56.6
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
|.||+|.+.++.....++-.++.-. ..+.++.+ |+...+.. . ..+++.+ .|+.+...-.
T Consensus 22 ~~rI~~l~SG~g~~~~~~l~~l~~~-~~~~~I~~--Vvt~~~~~--~---------------~~~~A~~-~gIp~~~~~~ 80 (229)
T 3auf_A 22 MIRIGVLISGSGTNLQAILDGCREG-RIPGRVAV--VISDRADA--Y---------------GLERARR-AGVDALHMDP 80 (229)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHTT-SSSEEEEE--EEESSTTC--H---------------HHHHHHH-TTCEEEECCG
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHhC-CCCCeEEE--EEcCCCch--H---------------HHHHHHH-cCCCEEEECc
Confidence 4688998888776544444333221 12344444 44332211 0 1233333 3776543111
Q ss_pred eC-CC---HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 83 EG-DQ---EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 83 ~G-~~---~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.. .+ -.+++.+..++.++|+||+...++-.- ..++...+..++=+.+
T Consensus 81 ~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~~IL~-------~~~l~~~~~~~iNiHp 131 (229)
T 3auf_A 81 AAYPSRTAFDAALAERLQAYGVDLVCLAGYMRLVR-------GPMLTAFPNRILNIHP 131 (229)
T ss_dssp GGSSSHHHHHHHHHHHHHHTTCSEEEESSCCSCCC-------HHHHHHSTTCEEEEES
T ss_pred ccccchhhccHHHHHHHHhcCCCEEEEcChhHhCC-------HHHHhhccCCEEEEcc
Confidence 11 10 136788888999999999987654322 2566666666666655
No 106
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=46.56 E-value=93 Score=23.56 Aligned_cols=107 Identities=11% Similarity=0.080 Sum_probs=58.7
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
|++|.|.+-++.....++-.++.-. ..+.++.++ +...+.. ...+++.+. |+++...-.
T Consensus 3 m~ki~vl~sG~g~~~~~~l~~l~~~-~l~~~I~~V--it~~~~~-----------------~v~~~A~~~-gIp~~~~~~ 61 (212)
T 3av3_A 3 MKRLAVFASGSGTNFQAIVDAAKRG-DLPARVALL--VCDRPGA-----------------KVIERAARE-NVPAFVFSP 61 (212)
T ss_dssp CEEEEEECCSSCHHHHHHHHHHHTT-CCCEEEEEE--EESSTTC-----------------HHHHHHHHT-TCCEEECCG
T ss_pred CcEEEEEEECCcHHHHHHHHHHHhC-CCCCeEEEE--EeCCCCc-----------------HHHHHHHHc-CCCEEEeCc
Confidence 4688888888776554544443321 124455444 4332211 122334433 777654211
Q ss_pred eC-CCH---HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 83 EG-DQE---GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 83 ~G-~~~---~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
.. .+. .+++.+..++.++|+||+...++-.- ..++...+..++=+.+.
T Consensus 62 ~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~~il~-------~~~l~~~~~~~iNiHpS 113 (212)
T 3av3_A 62 KDYPSKAAFESEILRELKGRQIDWIALAGYMRLIG-------PTLLSAYEGKIVNIHPS 113 (212)
T ss_dssp GGSSSHHHHHHHHHHHHHHTTCCEEEESSCCSCCC-------HHHHHHTTTCEEEEESS
T ss_pred ccccchhhhHHHHHHHHHhcCCCEEEEchhhhhCC-------HHHHhhhcCCEEEEecC
Confidence 11 101 34788888999999999987554322 25666666677766653
No 107
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=46.10 E-value=29 Score=26.53 Aligned_cols=36 Identities=14% Similarity=0.028 Sum_probs=28.5
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLH 38 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llh 38 (211)
..|+|++++-|+-.+-.++...-.|.+ .|.+++++-
T Consensus 3 ~~k~IllgvTGaiaa~k~~~ll~~L~~-~g~eV~vv~ 38 (209)
T 3zqu_A 3 GPERITLAMTGASGAQYGLRLLDCLVQ-EEREVHFLI 38 (209)
T ss_dssp SCSEEEEEECSSSCHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 368999999999999998887777766 478766554
No 108
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=45.24 E-value=73 Score=25.54 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=59.8
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC-CccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL-NSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v 81 (211)
.+||.|-+.++..+..+|-++.+.- ..++++.+ |+... +. +.+++.+ .|+++...-
T Consensus 89 ~~ri~vl~Sg~g~nl~~ll~~~~~g-~l~~~i~~--Visn~p~~-------------------~~~~A~~-~gIp~~~~~ 145 (288)
T 3obi_A 89 RRKVMLLVSQSDHCLADILYRWRVG-DLHMIPTA--IVSNHPRE-------------------TFSGFDF-GDIPFYHFP 145 (288)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHTT-SSCEEEEE--EEESSCGG-------------------GSCCTTT-TTCCEEECC
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHCC-CCCeEEEE--EEcCCChh-------------------HHHHHHH-cCCCEEEeC
Confidence 4678888888888888877765532 23445444 44433 21 1122332 377765421
Q ss_pred e-eCCCH--HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 82 T-EGDQE--GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 82 ~-~G~~~--~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
. ..+.. .+++.+..+++++|+||+...++-.- ..++...+-.++=+.+
T Consensus 146 ~~~~~r~~~~~~~~~~l~~~~~Dlivlagy~~il~-------~~~l~~~~~~~iNiHp 196 (288)
T 3obi_A 146 VNKDTRRQQEAAITALIAQTHTDLVVLARYMQILS-------DEMSARLAGRCINIHH 196 (288)
T ss_dssp CCTTTHHHHHHHHHHHHHHHTCCEEEESSCCSCCC-------HHHHHHTTTSEEEEEE
T ss_pred CCcccHHHHHHHHHHHHHhcCCCEEEhhhhhhhCC-------HHHHhhhcCCeEEeCc
Confidence 1 11201 24688999999999999987654322 2455555555555544
No 109
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=45.19 E-value=1.2e+02 Score=24.63 Aligned_cols=42 Identities=12% Similarity=0.012 Sum_probs=27.0
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDR 110 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~ 110 (211)
+++++.++ |+.+- ...+--..++.+..++.++|++|+-..++
T Consensus 50 v~~~A~~~-gIpv~---~~~~~~~~~~~~~l~~~~~Dliv~~~~~~ 91 (314)
T 3tqq_A 50 VKEIARQN-EIPII---QPFSLRDEVEQEKLIAMNADVMVVVAYGL 91 (314)
T ss_dssp HHHHHHHT-TCCEE---CCSCSSSHHHHHHHHTTCCSEEEEESCCS
T ss_pred HHHHHHHc-CCCEE---CcccCCCHHHHHHHHhcCCCEEEEcCccc
Confidence 45555554 77742 22220124778888999999999987653
No 110
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=45.05 E-value=13 Score=24.82 Aligned_cols=65 Identities=25% Similarity=0.346 Sum_probs=36.4
Q ss_pred HHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEE
Q 028280 64 SFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 64 ~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV 134 (211)
.++++..+ .|.++.+.-.... ..+.|.+..+.+++.++|+--....+.+ -+-+.++..+.-||++
T Consensus 17 kfkdiikk-ngfkvrtvrspqe-lkdsieelvkkynativvvvvddkewae----kairfvkslgaqvlii 81 (134)
T 2l69_A 17 KFKDIIKK-NGFKVRTVRSPQE-LKDSIEELVKKYNATIVVVVVDDKEWAE----KAIRFVKSLGAQVLII 81 (134)
T ss_dssp HHHHHHHH-TTCEEEEECSHHH-HHHHHHHHTTCCCCEEEEEECSSHHHHH----HHHHHHHHHCCCCEEE
T ss_pred HHHHHHHh-cCceEEEecCHHH-HHHHHHHHHHHhCCeEEEEEEccHHHHH----HHHHHHHhcCCeEEEE
Confidence 35555554 3666666544444 5666777777777777776654433322 2334455555555555
No 111
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=44.64 E-value=1e+02 Score=23.90 Aligned_cols=94 Identities=16% Similarity=0.141 Sum_probs=48.9
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
.++++.+.+..+|-.|+.++. +.|-++..|+..-+........ . ..-.+.++..++.. |++....-..
T Consensus 5 MKvvvl~SGGkDSs~al~~l~----~~G~eV~~L~~~~~~~~~s~~~-h------~~~~e~a~~~A~~L-GIpl~~v~~~ 72 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAI----KNRFSVKFLVTMVSENEESYMY-H------TINANLTDLQARAL-GIPLVKGFTQ 72 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHH----HTTCEEEEEEEEECC---------------CCSSSHHHHHHHHH-TCCEEEEEC-
T ss_pred CEEEEEecCcHHHHHHHHHHH----HcCCeEEEEEEEcCCCCCcccc-C------CccHHHHHHHHHHc-CCCEEEEECC
Confidence 489999999999887776554 4567777665543321100000 0 00001122333333 7776655444
Q ss_pred CC--CHHHHHHHHHHHhCCCEEEEecCC
Q 028280 84 GD--QEGARIAALVREIGASALVVGLHD 109 (211)
Q Consensus 84 G~--~~~~~I~~~a~~~~adLIVmG~~~ 109 (211)
|. +-.+.+.+..++.+++-+|.|.--
T Consensus 73 g~~~~e~e~l~~~l~~~~i~~vv~Gdi~ 100 (237)
T 3rjz_A 73 GEKEKEVEDLKRVLSGLKIQGIVAGALA 100 (237)
T ss_dssp -----CHHHHHHHHTTSCCSEEECC---
T ss_pred CCchHHHHHHHHHHHhcCCcEEEECCcc
Confidence 43 134566666666789999999854
No 112
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=44.58 E-value=39 Score=26.46 Aligned_cols=61 Identities=8% Similarity=-0.062 Sum_probs=39.4
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHcc-CCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSS-FNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~-a~~PVLvV~~ 136 (211)
|.++.. +-..- +.+.+++.+++.++|+|.+..........+..+.+.+-+. ..|||++--.
T Consensus 151 G~~Vi~-LG~~v-p~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~~~~~v~vGG~ 212 (258)
T 2i2x_B 151 GYNVVD-LGRDV-PAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFACGGG 212 (258)
T ss_dssp TCEEEE-EEEEC-CSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTCCCCEEEEST
T ss_pred CCEEEE-CCCCC-CHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcCCCCcEEEECc
Confidence 554433 23345 8999999999999999999986554443344444444332 3488887654
No 113
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=44.43 E-value=96 Score=23.09 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=31.6
Q ss_pred EEEEeeCCCHHHHHHHHHH-HhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 78 EIIVTEGDQEGARIAALVR-EIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 78 ~~~v~~G~~~~~~I~~~a~-~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+..+..|+ ..+++...-+ ..++|.||-. |+++..+-++.+.||+-|+-.
T Consensus 30 ~i~i~~~~-l~~~v~~a~~~~~~~dVIISR----------Ggta~~lr~~~~iPVV~I~~s 79 (196)
T 2q5c_A 30 IPITKTAS-LTRASKIAFGLQDEVDAIISR----------GATSDYIKKSVSIPSISIKVT 79 (196)
T ss_dssp EEEEEECC-HHHHHHHHHHHTTTCSEEEEE----------HHHHHHHHTTCSSCEEEECCC
T ss_pred ceEEEECC-HHHHHHHHHHhcCCCeEEEEC----------ChHHHHHHHhCCCCEEEEcCC
Confidence 45567777 5544433222 4678854432 667778888889999999753
No 114
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=43.75 E-value=1.1e+02 Score=24.87 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=36.8
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCC---CCcccc-ccc-HHHHHHccCCceEEEEcCC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHD---RSFLHK-LAM-SHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~---~~~~~~-~gs-~a~~vl~~a~~PVLvV~~~ 137 (211)
|+++.. ...+ -...+.. .+|++++|+.. .+++.. .|+ ...-+.++.++||+|+-+.
T Consensus 172 gI~vtl--i~Ds-a~~~~m~-----~vd~VivGAd~i~~nG~v~nkiGT~~iAl~Ak~~~vP~~V~a~~ 232 (315)
T 3ecs_A 172 NVPVTV--VLDA-AVGYIME-----KADLVIVGAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAES 232 (315)
T ss_dssp TCCEEE--ECGG-GHHHHGG-----GCSEEEEECSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred CCCEEE--Eehh-HHHHHHH-----hCCEEEECceEEecCCCeeehhhhHHHHHHHHHhCCCEEEEecc
Confidence 777644 3333 3334433 69999999986 344444 888 3335778889999999653
No 115
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=43.31 E-value=1.4e+02 Score=24.56 Aligned_cols=113 Identities=8% Similarity=0.146 Sum_probs=69.6
Q ss_pred HHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee-C----CCH------
Q 028280 19 ALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE-G----DQE------ 87 (211)
Q Consensus 19 al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~-G----~~~------ 87 (211)
.+.|..+.+.+.|+...-+||+..+... ...+.........+.+.|.+. |+.+-.++.. + +..
T Consensus 111 l~~~sve~a~~~GADAVk~lv~~g~d~~-----~e~~~~q~~~l~rv~~ec~~~-GiPlllEil~y~~~~~~~~~~~~a~ 184 (332)
T 3iv3_A 111 LVDWSIKRLKEAGADAVKFLLYYDVDGD-----PQVNVQKQAYIERIGSECQAE-DIPFFLEILTYDETISNNSSVEFAK 184 (332)
T ss_dssp CTTCCHHHHHHTTCSEEEEEEEECTTSC-----HHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEECBTTBSCTTSHHHHT
T ss_pred ccccCHHHHHHcCCCEEEEEEEcCCCch-----HHHHHHHHHHHHHHHHHHHHc-CCceEEEEeccCCCCCCCcchhhhc
Confidence 5668888899999988888888754322 222233444555677777765 8886665433 1 211
Q ss_pred --HHHHHHHHHHh-----CCCEEEEecCCCCc-cccccc------------HHHHHHccCCceEEEEcCC
Q 028280 88 --GARIAALVREI-----GASALVVGLHDRSF-LHKLAM------------SHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 88 --~~~I~~~a~~~-----~adLIVmG~~~~~~-~~~~gs------------~a~~vl~~a~~PVLvV~~~ 137 (211)
.+.|...++.. ++|++=+--.+.-. .+.||. .-..+...+++|++++..+
T Consensus 185 ~~p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG 254 (332)
T 3iv3_A 185 VKVHKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAG 254 (332)
T ss_dssp THHHHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTT
T ss_pred cCHHHHHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 23366666554 99999888766431 111211 1235668889999988654
No 116
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*
Probab=43.01 E-value=1.2e+02 Score=23.81 Aligned_cols=86 Identities=16% Similarity=0.089 Sum_probs=47.6
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (211)
|...++.|+.|+... +.|+.++...+..+..+-+.. +.....+.+..+.+++ . |..+-..
T Consensus 25 m~~~~LivALD~~~~-----~~al~l~~~l~~~v~~~KvG~----------~l~~~~G~~~v~~Lk~----~-g~~VflD 84 (255)
T 3ldv_A 25 MNDPKVIVALDYDNL-----ADALAFVDKIDPSTCRLKVGK----------EMFTLFGPDFVRELHK----R-GFSVFLD 84 (255)
T ss_dssp CCCCCEEEEECCSSH-----HHHHHHHTTSCGGGCEEEEEH----------HHHHHHHHHHHHHHHH----T-TCCEEEE
T ss_pred CCCCCeEEEcCCCCH-----HHHHHHHHHhCCcCcEEEeCH----------HHHHhhCHHHHHHHHh----c-CCCEEEE
Confidence 556789999998642 346666676666555544432 2222223233333332 1 4455555
Q ss_pred EeeCCCHHHHHH---HHHHHhCCCEEEEec
Q 028280 81 VTEGDQEGARIA---ALVREIGASALVVGL 107 (211)
Q Consensus 81 v~~G~~~~~~I~---~~a~~~~adLIVmG~ 107 (211)
+..+| +...+. +.+.+.++|++-+=.
T Consensus 85 lK~~D-IpnTv~~a~~~~~~~gaD~vTVh~ 113 (255)
T 3ldv_A 85 LKFHD-IPNTCSKAVKAAAELGVWMVNVHA 113 (255)
T ss_dssp EEECS-CHHHHHHHHHHHHHTTCSEEEEEG
T ss_pred Eeccc-chhHHHHHHHHHHhcCCCEEEEec
Confidence 55666 554443 455677899887733
No 117
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=41.00 E-value=1.1e+02 Score=24.60 Aligned_cols=68 Identities=12% Similarity=-0.074 Sum_probs=31.7
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHH-ccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDIS-SSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl-~~a~~PVLvV~~~ 137 (211)
+..++++. +++++........-+..+.+.+...++|+||+.. |-+. +..++..++ ....+|+.+|+-+
T Consensus 47 i~~~L~~~-g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~G-GDGT---v~~v~~~l~~~~~~~pl~iIP~G 115 (337)
T 2qv7_A 47 ALIKLEKA-GYETSAYATEKIGDATLEAERAMHENYDVLIAAG-GDGT---LNEVVNGIAEKPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHHT-TEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEE-CHHH---HHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHc-CCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEc-CchH---HHHHHHHHHhCCCCCcEEEecCC
Confidence 44444432 5555544333321344444444445677666543 1111 222343442 2456788888754
No 118
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=40.58 E-value=33 Score=25.06 Aligned_cols=41 Identities=15% Similarity=-0.014 Sum_probs=28.5
Q ss_pred CCCCeEEEEecC-CHHHHHHHHHHHHhhccCCCEEEEEEEec
Q 028280 1 MDVKKIVVIVED-VDAARAALLWALQNLLRFGDVVTLLHVFP 41 (211)
Q Consensus 1 m~~k~ILv~vD~-s~~s~~al~~A~~la~~~~a~l~llhV~~ 41 (211)
|+|++||+.... ..+++..+++..+.+...+.++.++++.+
T Consensus 3 M~M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 3 MSSPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp --CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred CCcceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 667788776643 34577888888888877788888887754
No 119
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=40.39 E-value=1.1e+02 Score=25.20 Aligned_cols=40 Identities=13% Similarity=-0.074 Sum_probs=22.1
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEe
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVF 40 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~ 40 (211)
|.|++|++.+.-.++.-....-...+-++.+.++.+++..
T Consensus 23 ~~m~ki~~v~Gtr~~~~~~a~li~~l~~~~~~~~~~~~tG 62 (396)
T 3dzc_A 23 NAMKKVLIVFGTRPEAIKMAPLVQQLCQDNRFVAKVCVTG 62 (396)
T ss_dssp -CCEEEEEEECSHHHHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred CCCCeEEEEEeccHhHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 5678999888666655444333333434345555555543
No 120
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5
Probab=39.74 E-value=1.7e+02 Score=24.54 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=37.4
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCC---CCcccc-ccc-HHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHD---RSFLHK-LAM-SHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~---~~~~~~-~gs-~a~~vl~~a~~PVLvV~~ 136 (211)
|+++... ..+ -... ..++.++|+||+|+.. .+.+-. .|+ ..--+.++.++|++|+-+
T Consensus 237 GIpvtlI--~Ds-a~~~---~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap 298 (383)
T 2a0u_A 237 DIPCTLI--CDG-AASS---LMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAP 298 (383)
T ss_dssp TCCEEEE--CGG-GHHH---HHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred CCCEEEE--ehh-HHHH---HhhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeCC
Confidence 7776553 333 2333 3345679999999986 344444 888 333567788999999965
No 121
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=39.66 E-value=58 Score=26.88 Aligned_cols=79 Identities=11% Similarity=0.012 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
..+++.+.+|.++|.+...+|+++|=.. ..... ..-..+.+.+..+++++++++...++. .+-.++.
T Consensus 154 ~~~eRiar~AFe~A~~rrkkVt~v~KaN---vlk~s--------~glf~~~~~eva~eyp~i~~~~~~vD~--~~mqlv~ 220 (337)
T 1w0d_A 154 FGVRRVVADAFERARRRRKHLTLVHKTN---VLTFA--------GGLWLRTVDEVGECYPDVEVAYQHVDA--ATIHMIT 220 (337)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEECTT---TSHHH--------HHHHHHHHHHHHTTCTTSEEEEEEHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECCc---cchhh--------hHHHHHHHHHHHHHCCceEEEEEEHHH--HHHHHhh
Confidence 4578888888888888777788877432 22101 111223345555568888888765432 3444443
Q ss_pred HHHHhCCCEEEEec
Q 028280 94 LVREIGASALVVGL 107 (211)
Q Consensus 94 ~a~~~~adLIVmG~ 107 (211)
- -.+.|.||+..
T Consensus 221 ~--P~~FDVivt~N 232 (337)
T 1w0d_A 221 D--PGRFDVIVTDN 232 (337)
T ss_dssp C--GGGCSEEEECH
T ss_pred C--cccccEEEECc
Confidence 2 34678877763
No 122
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=39.65 E-value=80 Score=25.93 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=39.0
Q ss_pred HHHHHHhhhCCCcEEEEEeeCCCH----HHHHHHHHHHhCCCEEE-EecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 64 SFKDICNDFFNTNVEIIVTEGDQE----GARIAALVREIGASALV-VGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 64 ~l~~~~~~~~~i~~~~~v~~G~~~----~~~I~~~a~~~~adLIV-mG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+.+.+++ .++++...+..|+ + .+.+.+.+++.++|+|| +|.. ..+.++..+.....+|++.|+-
T Consensus 49 ~v~~~L~~-~g~~~~~~~~~ge-~~~~~v~~~~~~~~~~~~d~IIavGGG------sv~D~aK~iA~~~~~p~i~IPT 118 (370)
T 1jq5_A 49 TIVNELKK-GNIAAEEVVFSGE-ASRNEVERIANIARKAEAAIVIGVGGG------KTLDTAKAVADELDAYIVIVPT 118 (370)
T ss_dssp HHHHHHHT-TTCEEEEEECCSS-CBHHHHHHHHHHHHHTTCSEEEEEESH------HHHHHHHHHHHHHTCEEEEEES
T ss_pred HHHHHHHH-cCCeEEEEeeCCC-CCHHHHHHHHHHHHhcCCCEEEEeCCh------HHHHHHHHHHHhcCCCEEEecc
Confidence 34444433 3666654556666 3 34566777788999988 6641 1222444444445799999974
No 123
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=39.52 E-value=1.3e+02 Score=23.11 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=37.8
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH---hCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~---~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+++.+.++ +...++.+..|. ..+++...-+. .++|.||-. |+++..+-++.+.||+-|+-.
T Consensus 28 ~~~i~~e~-~~~~~I~vi~~~-le~av~~a~~~~~~~~~dVIISR----------Ggta~~Lr~~~~iPVV~I~vs 91 (225)
T 2pju_A 28 FRDISLEF-DHLANITPIQLG-FEKAVTYIRKKLANERCDAIIAA----------GSNGAYLKSRLSVPVILIKPS 91 (225)
T ss_dssp HHHHHTTT-TTTCEEEEECCC-HHHHHHHHHHHTTTSCCSEEEEE----------HHHHHHHHTTCSSCEEEECCC
T ss_pred HHHHHHhh-CCCceEEEecCc-HHHHHHHHHHHHhcCCCeEEEeC----------ChHHHHHHhhCCCCEEEecCC
Confidence 44444443 445667777787 55554433221 247755433 667778888889999999753
No 124
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=39.44 E-value=86 Score=23.07 Aligned_cols=84 Identities=19% Similarity=0.118 Sum_probs=44.5
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G 84 (211)
+++++.|+.. .+.+++.+-.+.. + +..+++..+.. ...+... ++.+.+.+++..+-..+...
T Consensus 2 ~li~a~d~~~-~~~~~~~~~~~~~--~--v~~iev~~~~~----------~~~g~~~---i~~l~~~~~~~~i~~~l~~~ 63 (207)
T 3ajx_A 2 KLQVAIDLLS-TEAALELAGKVAE--Y--VDIIELGTPLI----------KAEGLSV---ITAVKKAHPDKIVFADMKTM 63 (207)
T ss_dssp EEEEEECCSC-HHHHHHHHHHHGG--G--CSEEEECHHHH----------HHHCTHH---HHHHHHHSTTSEEEEEEEEC
T ss_pred eEEEEeCCCC-HHHHHHHHHHhhc--c--CCEEEECcHHH----------HhhCHHH---HHHHHHhCCCCeEEEEEEec
Confidence 7889999753 3444444444433 2 33477743210 0011111 22222223355555444444
Q ss_pred CCHHHHHHHHHHHhCCCEEEEec
Q 028280 85 DQEGARIAALVREIGASALVVGL 107 (211)
Q Consensus 85 ~~~~~~I~~~a~~~~adLIVmG~ 107 (211)
+ +.+..++.+.+.++|.|.+-.
T Consensus 64 d-i~~~~~~~a~~~Gad~v~vh~ 85 (207)
T 3ajx_A 64 D-AGELEADIAFKAGADLVTVLG 85 (207)
T ss_dssp S-CHHHHHHHHHHTTCSEEEEET
T ss_pred C-ccHHHHHHHHhCCCCEEEEec
Confidence 5 667777888889999998643
No 125
>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O
Probab=38.73 E-value=1.5e+02 Score=23.77 Aligned_cols=96 Identities=8% Similarity=0.129 Sum_probs=53.8
Q ss_pred HHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeC----CCH--HHHHHHHHH
Q 028280 23 ALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG----DQE--GARIAALVR 96 (211)
Q Consensus 23 A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G----~~~--~~~I~~~a~ 96 (211)
.++-|.+.|+....+++...... +. + ..+...++.+.|.++ ++.+-.....| .|+ ....++.|.
T Consensus 130 ~ve~Av~~GAdaV~~~i~~Gs~~--~~--~-----~l~~i~~v~~~a~~~-GlpvIie~~~G~~~~~d~e~i~~aariA~ 199 (295)
T 3glc_A 130 SMDDAVRLNSCAVAAQVYIGSEY--EH--Q-----SIKNIIQLVDAGMKV-GMPTMAVTGVGKDMVRDQRYFSLATRIAA 199 (295)
T ss_dssp CHHHHHHTTCSEEEEEECTTSTT--HH--H-----HHHHHHHHHHHHHTT-TCCEEEEECC----CCSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCEEEEEEECCCCc--HH--H-----HHHHHHHHHHHHHHc-CCEEEEECCCCCccCCCHHHHHHHHHHHH
Confidence 34445567777777777654211 01 1 111223355556553 66654433222 222 234668888
Q ss_pred HhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 97 EIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 97 ~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+.++|.|-.+..+. .+ ++++..+++||++.-.
T Consensus 200 elGAD~VKt~~t~e-~~-------~~vv~~~~vPVv~~GG 231 (295)
T 3glc_A 200 EMGAQIIKTYYVEK-GF-------ERIVAGCPVPIVIAGG 231 (295)
T ss_dssp HTTCSEEEEECCTT-TH-------HHHHHTCSSCEEEECC
T ss_pred HhCCCEEEeCCCHH-HH-------HHHHHhCCCcEEEEEC
Confidence 99999999986531 12 4677788999987643
No 126
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=38.52 E-value=96 Score=24.81 Aligned_cols=105 Identities=15% Similarity=0.157 Sum_probs=57.8
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
++||.|-+.++..+..+|-++.+.- ..++++.++-...+ .. +.+++.+ .|+++...-.
T Consensus 88 ~~ri~vl~Sg~g~nl~~ll~~~~~g-~l~~~i~~Visn~~--~a------------------~~~~A~~-~gIp~~~~~~ 145 (287)
T 3nrb_A 88 RKKVVIMVSKFDHCLGDLLYRHRLG-ELDMEVVGIISNHP--RE------------------ALSVSLV-GDIPFHYLPV 145 (287)
T ss_dssp CCEEEEEECSCCHHHHHHHHHHHHT-SSCCEEEEEEESSC--GG------------------GCCCCCC-TTSCEEECCC
T ss_pred CcEEEEEEeCCCcCHHHHHHHHHCC-CCCeEEEEEEeCCh--HH------------------HHHHHHH-cCCCEEEEec
Confidence 4577777777777777776665432 24456554433222 10 1122222 3776554211
Q ss_pred -eCCC--HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 83 -EGDQ--EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 83 -~G~~--~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
..+. -.+++.+..+++++|+||+...++-.- ..++...+-.++=+.+
T Consensus 146 ~~~~r~~~~~~~~~~l~~~~~Dlivlagym~il~-------~~~l~~~~~~~iNiHp 195 (287)
T 3nrb_A 146 TPATKAAQESQIKNIVTQSQADLIVLARYMQILS-------DDLSAFLSGRCINIHH 195 (287)
T ss_dssp CGGGHHHHHHHHHHHHHHHTCSEEEESSCCSCCC-------HHHHHHHTTSEEEEES
T ss_pred cCcchhhHHHHHHHHHHHhCCCEEEhhhhhhhcC-------HHHHhhccCCeEEECc
Confidence 1110 125688899999999999987654322 2455555555665554
No 127
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=37.82 E-value=23 Score=26.77 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=36.1
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhC--CCEEEEecCCC---Ccccc-ccc-HHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIG--ASALVVGLHDR---SFLHK-LAM-SHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~--adLIVmG~~~~---~~~~~-~gs-~a~~vl~~a~~PVLvV~~ 136 (211)
|++++.. ..+ ....+ .++.+ +|++++|++.- +.+.. .|+ ...-+.++.++||+|+-+
T Consensus 30 gI~vtlI--~Ds-a~~~~---m~~~~~~Vd~VivGAd~v~~nG~v~nkiGT~~~Al~Ak~~~vPf~V~a~ 93 (191)
T 1w2w_B 30 KIPSTLI--TDS-SIAYR---IRTSPIPIKAAFVGADRIVRNGDTANKIGTLQLAVICKQFGIKFFVVAP 93 (191)
T ss_dssp TCCBEEB--CGG-GHHHH---HHHCSSCEEEEEECCSEECTTSCEEEETTHHHHHHHHHHHTCEEEEECC
T ss_pred CCCEEEE--ech-HHHHH---HHhCCCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecc
Confidence 7776543 333 33333 34445 99999999862 33444 888 333456777899999865
No 128
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=37.74 E-value=1.4e+02 Score=23.02 Aligned_cols=35 Identities=11% Similarity=-0.114 Sum_probs=25.8
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
.+|+|++.|..+|-..+..+.+.. ..+.++|+...
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~----~~v~vv~idtg 80 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIR----PDIPVILTDTG 80 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHS----TTCEEEECCCS
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhC----CCCeEEEecCC
Confidence 479999999999888877766654 35667777543
No 129
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=35.74 E-value=1.5e+02 Score=22.85 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhCCCcEEEEEe-------eCCCH--HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 62 ALSFKDICNDFFNTNVEIIVT-------EGDQE--GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 62 ~~~l~~~~~~~~~i~~~~~v~-------~G~~~--~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
...+.+.|.++ ++.+...+. .|.++ .+.+.+.+.+.++|.|.++.. ..+. ....+....++||+
T Consensus 134 ~~~v~~~~~~~-g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~--~~~~----~l~~i~~~~~ipvv 206 (273)
T 2qjg_A 134 LGMIAETCEYW-GMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYT--GDID----SFRDVVKGCPAPVV 206 (273)
T ss_dssp HHHHHHHHHHH-TCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC--SSHH----HHHHHHHHCSSCEE
T ss_pred HHHHHHHHHHc-CCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCC--CCHH----HHHHHHHhCCCCEE
Confidence 33456666654 666655441 11212 234457788899999998841 1111 33466667789999
Q ss_pred EEcC
Q 028280 133 AIKQ 136 (211)
Q Consensus 133 vV~~ 136 (211)
....
T Consensus 207 a~GG 210 (273)
T 2qjg_A 207 VAGG 210 (273)
T ss_dssp EECC
T ss_pred EEeC
Confidence 8753
No 130
>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}
Probab=35.40 E-value=85 Score=24.65 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=50.9
Q ss_pred CeEEEEecCCHHHHHH-HHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhh-hCCCcEEEEE
Q 028280 4 KKIVVIVEDVDAARAA-LLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICND-FFNTNVEIIV 81 (211)
Q Consensus 4 k~ILv~vD~s~~s~~a-l~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~i~~~~~v 81 (211)
.++.|++|.....-.. .+++..++...+..+..+-+.-. .....+.+-.+.++++.+. ..|..+=...
T Consensus 14 ~~LcVgLD~~~~~~~~~~~~~~~lv~~l~~~v~~~Kvg~~----------lf~~~G~~g~~~l~~l~~~~~~g~~VflDl 83 (255)
T 3qw3_A 14 SLLCVGLDPRAKTAAAAVEECKRLIEQTHEYAAAYKPNAA----------FFEFFGAEGWAALSEVIRAVPAGIPVVLDA 83 (255)
T ss_dssp CCEEEEECCCCSSHHHHHHHHHHHHHHHGGGCSEEEEBHH----------HHHTTTHHHHHHHHHHHHHSCTTCCBEEEE
T ss_pred CCEEEEeCCCchhcchHHHHHHHHHHHhCCcCcEEEEcHH----------HHHhcCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 4688999987543222 66677777766665555555421 1111121212223333321 1366666667
Q ss_pred eeCCCHHHHHHHHHH----HhCCCEEEEec
Q 028280 82 TEGDQEGARIAALVR----EIGASALVVGL 107 (211)
Q Consensus 82 ~~G~~~~~~I~~~a~----~~~adLIVmG~ 107 (211)
..|| +...+..+++ ++++|+|-+-.
T Consensus 84 K~~D-I~nTv~~~a~~~~~~lg~d~vTvh~ 112 (255)
T 3qw3_A 84 KRGD-IADTADAYATSAFKHLNAHAITASP 112 (255)
T ss_dssp EECC-CHHHHHHHHHHHHTTSCCSEEEECC
T ss_pred ecCC-cHHHHHHHHHHHHHHcCCCEEEEcc
Confidence 7788 7776655553 45689888743
No 131
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=34.65 E-value=1.5e+02 Score=22.64 Aligned_cols=85 Identities=12% Similarity=0.125 Sum_probs=55.4
Q ss_pred HHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhC
Q 028280 20 LLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIG 99 (211)
Q Consensus 20 l~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~ 99 (211)
+-.|+..|++.+.++-++.-..... . .+.+.++ + +++++.......+-.+.++..+++.+
T Consensus 95 il~aL~~a~~~~~kIavVg~~~~~~----~------------~~~i~~l---l-~~~i~~~~~~~~ee~~~~i~~l~~~G 154 (225)
T 2pju_A 95 VLQFLAKAGKLTSSIGVVTYQETIP----A------------LVAFQKT---F-NLRLDQRSYITEEDARGQINELKANG 154 (225)
T ss_dssp HHHHHHHTTCTTSCEEEEEESSCCH----H------------HHHHHHH---H-TCCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCcEEEEeCchhhh----H------------HHHHHHH---h-CCceEEEEeCCHHHHHHHHHHHHHCC
Confidence 3457777777777777775533211 1 1113333 2 66777766665546788888888899
Q ss_pred CCEEEEecCCCCcccccccHHHHHHccCCceEEEEc
Q 028280 100 ASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 100 adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~ 135 (211)
+++||=|. ++..+.++.++|.+++.
T Consensus 155 ~~vVVG~~-----------~~~~~A~~~Gl~~vlI~ 179 (225)
T 2pju_A 155 TEAVVGAG-----------LITDLAEEAGMTGIFIY 179 (225)
T ss_dssp CCEEEESH-----------HHHHHHHHTTSEEEESS
T ss_pred CCEEECCH-----------HHHHHHHHcCCcEEEEC
Confidence 99976543 45678888999988876
No 132
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=34.20 E-value=49 Score=22.11 Aligned_cols=40 Identities=10% Similarity=-0.023 Sum_probs=28.6
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEe
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVF 40 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~ 40 (211)
|.+++||++....-.+--.++..-+.++..|-.+.+-|+.
T Consensus 1 M~mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~ 40 (106)
T 1e2b_A 1 MEKKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFP 40 (106)
T ss_dssp CCCEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEEC
T ss_pred CCCcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 7788999998755444467777777787788776665554
No 133
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=34.19 E-value=1.8e+02 Score=23.33 Aligned_cols=60 Identities=8% Similarity=0.082 Sum_probs=38.9
Q ss_pred CCcEEEEEeeCCCHHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEc
Q 028280 74 NTNVEIIVTEGDQEGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~ 135 (211)
.+.+-.-+.. + ..++| .+.|++.++|-+++...-...... +-.--..|...++.||++-.
T Consensus 81 rvpViaGvg~-s-t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (314)
T 3d0c_A 81 RATVVAGIGY-S-VDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF 144 (314)
T ss_dssp SSEEEEEECS-S-HHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred CCeEEecCCc-C-HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 4444444443 4 76665 577888999999998764332222 33334467778899999987
No 134
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5
Probab=34.00 E-value=77 Score=26.24 Aligned_cols=57 Identities=11% Similarity=0.173 Sum_probs=37.5
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCC--CCcccc-ccc-HHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHD--RSFLHK-LAM-SHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~--~~~~~~-~gs-~a~~vl~~a~~PVLvV~~ 136 (211)
|+++... .++ ... ...++.++|+|++|+.. .+++.. .|+ ..--+.++.++|++|+-+
T Consensus 206 GI~vtlI--~Ds-a~~---~~M~~~~Vd~VivGAd~V~aNGv~NKiGT~~lAl~Ak~~~vPfyV~a~ 266 (351)
T 1t5o_A 206 GIDVTLI--TDS-MVG---IVMQKGMVDKVIVGADRIVRDAVFNKIGTYTVSVVAKHHNIPFYVAAP 266 (351)
T ss_dssp TCCEEEE--CGG-GHH---HHHHTTCCSEEEECCSEEETTEEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred CCCEEEE--ehh-HHH---HHhhcCCCCEEEECccchhhcCcccccCHHHHHHHHHHcCCCEEEeCc
Confidence 7776643 233 233 33345579999999986 344444 898 333566778999999865
No 135
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=33.75 E-value=40 Score=25.69 Aligned_cols=49 Identities=0% Similarity=-0.087 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhCCCEEEE--ecCCCCcccccccHHHHHHccC---CceEEEEc
Q 028280 87 EGARIAALVREIGASALVV--GLHDRSFLHKLAMSHNDISSSF---NCRVLAIK 135 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVm--G~~~~~~~~~~gs~a~~vl~~a---~~PVLvV~ 135 (211)
|.+.+++.++++++|+|.+ ..........+..+.+.+-+.. ++||++--
T Consensus 131 p~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v~v~vGG 184 (215)
T 3ezx_A 131 LNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSVKCMFGG 184 (215)
T ss_dssp CHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGSEEEEES
T ss_pred CHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCCCEEEEEC
Confidence 8999999999999999999 5433222222444555554443 47777754
No 136
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=33.72 E-value=73 Score=21.14 Aligned_cols=46 Identities=15% Similarity=0.406 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 62 ALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 62 ~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
.+.++++..++ +..+-..+.++..-++..+++.+..++..+++-..
T Consensus 39 kdsieelvkky-nativvvvvddkewaekairfvkslgaqvliiiyd 84 (134)
T 2l69_A 39 KDSIEELVKKY-NATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYD 84 (134)
T ss_dssp HHHHHHHTTCC-CCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred HHHHHHHHHHh-CCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 34455555543 55555555555545788889999999987776543
No 137
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=33.38 E-value=1.5e+02 Score=22.03 Aligned_cols=86 Identities=15% Similarity=0.182 Sum_probs=56.1
Q ss_pred HHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhC
Q 028280 20 LLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIG 99 (211)
Q Consensus 20 l~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~ 99 (211)
+-.|+..|++.+.++-++.-...... .+.+.++ + +++++.......+-.+.+++.+++.+
T Consensus 83 il~al~~a~~~~~kIavvg~~~~~~~----------------~~~~~~l---l-~~~i~~~~~~~~~e~~~~i~~l~~~G 142 (196)
T 2q5c_A 83 TMRAVYNAKRFGNELALIAYKHSIVD----------------KHEIEAM---L-GVKIKEFLFSSEDEITTLISKVKTEN 142 (196)
T ss_dssp HHHHHHHHGGGCSEEEEEEESSCSSC----------------HHHHHHH---H-TCEEEEEEECSGGGHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCCcEEEEeCcchhhH----------------HHHHHHH---h-CCceEEEEeCCHHHHHHHHHHHHHCC
Confidence 34567777777788777765433221 0113333 2 66777766655546778888889999
Q ss_pred CCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 100 ASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 100 adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+++||=|. ++.++.++.++|.+++..
T Consensus 143 ~~vvVG~~-----------~~~~~A~~~Gl~~vli~s 168 (196)
T 2q5c_A 143 IKIVVSGK-----------TVTDEAIKQGLYGETINS 168 (196)
T ss_dssp CCEEEECH-----------HHHHHHHHTTCEEEECCC
T ss_pred CeEEECCH-----------HHHHHHHHcCCcEEEEec
Confidence 99976553 455788888888877754
No 138
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=33.32 E-value=84 Score=26.17 Aligned_cols=78 Identities=6% Similarity=-0.009 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
..+++.+.+|.++|.+...+|+++|=... ...+ . -..+.+.+..+++++++++...++. ..-.++.
T Consensus 163 ~~~eRIar~AFe~A~~rrkkVt~v~KaNv---lk~~--~-------lf~~~~~eva~eypdI~~~~~~VD~--~~mqlv~ 228 (359)
T 2y3z_A 163 PEVERVARVAFEAARKRRKHVVSVDKANV---LEVG--E-------FWRKTVEEVGRGYPDVALEHQYVDA--MAMHLVR 228 (359)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTT---CHHH--H-------HHHHHHHHHHTTCTTSEEEEEEHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECCcc---cccc--H-------HHHHHHHHHHHHCCcEEEEeeEHHH--HHHHHhh
Confidence 45788899999999888777887775322 2111 1 1223345555668888888764432 3444443
Q ss_pred HHHHhCCCEEEEec
Q 028280 94 LVREIGASALVVGL 107 (211)
Q Consensus 94 ~a~~~~adLIVmG~ 107 (211)
- -.+.|.||+..
T Consensus 229 ~--P~~FDVivt~N 240 (359)
T 2y3z_A 229 S--PARFDVVVTGN 240 (359)
T ss_dssp C--GGGCSEEEECH
T ss_pred C--cccccEEEEcC
Confidence 2 34678877753
No 139
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=33.05 E-value=47 Score=26.77 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=32.2
Q ss_pred HHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEE-Ec
Q 028280 91 IAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLA-IK 135 (211)
Q Consensus 91 I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLv-V~ 135 (211)
+++.+.+.+.|.|++|+.+-+.+.. +..+...+-+..+.||++ .+
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~~~~~v~~ik~~~~lPvil~fP 104 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESHMEPYVAAVKAATPLPVVLHFP 104 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHHHHHHHHHHHHhCCCCEEEECC
Confidence 5666677899999999544443333 666666666668999999 76
No 140
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=33.02 E-value=1.8e+02 Score=22.97 Aligned_cols=67 Identities=7% Similarity=0.022 Sum_probs=35.2
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHc-cCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISS-SFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~-~a~~PVLvV~~~ 137 (211)
+..++++. +++++........-+..+++.+.+ ++|+||+.. |-+. +..+...+.. ...+|+.+++-+
T Consensus 31 i~~~l~~~-~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~G-GDGT---l~~v~~~l~~~~~~~~l~iiP~G 98 (304)
T 3s40_A 31 IVPPLAAA-FPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFG-GDGT---VFECTNGLAPLEIRPTLAIIPGG 98 (304)
T ss_dssp HHHHHHHH-CSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEE-CHHH---HHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHc-CCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEc-cchH---HHHHHHHHhhCCCCCcEEEecCC
Confidence 44444433 666666554444345556655543 678776653 2222 2224444443 256888888864
No 141
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=32.96 E-value=85 Score=26.20 Aligned_cols=77 Identities=5% Similarity=-0.017 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
..+++.+.+|.++|.+...+|+++|=... ...+ . -..+.+.+..+++++++++...++. .+-.++.
T Consensus 174 ~~~eRIar~AFe~A~~rrkkVt~v~KaNv---lkt~--g-------lf~~~~~eva~eypdV~~~~~~VD~--~~mqlv~ 239 (366)
T 1vlc_A 174 KTVERIARTAFEIAKNRRKKVTSVDKANV---LYSS--M-------LWRKVVNEVAREYPDVELTHIYVDN--AAMQLIL 239 (366)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTT---CHHH--H-------HHHHHHHHHHTTCTTSEEEEEEHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECCcc---cccc--h-------HHHHHHHHHHHHCCCceEEeeeHHH--HHHHHhh
Confidence 45788899999999988777877774322 2111 1 1123345555568888888765432 3444444
Q ss_pred HHHHhCCCEEEEe
Q 028280 94 LVREIGASALVVG 106 (211)
Q Consensus 94 ~a~~~~adLIVmG 106 (211)
- -.+.|.||+.
T Consensus 240 ~--P~~FDVivt~ 250 (366)
T 1vlc_A 240 K--PSQFDVILTT 250 (366)
T ss_dssp C--GGGCSEEEEC
T ss_pred C--cccceEEEEc
Confidence 3 2467877765
No 142
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=32.46 E-value=2e+02 Score=23.29 Aligned_cols=102 Identities=17% Similarity=0.048 Sum_probs=60.4
Q ss_pred eEEEEec-----CCHHHHHHHHHHHHhhccCC-CEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEE
Q 028280 5 KIVVIVE-----DVDAARAALLWALQNLLRFG-DVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVE 78 (211)
Q Consensus 5 ~ILv~vD-----~s~~s~~al~~A~~la~~~~-a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 78 (211)
.|||-.+ .++.+..++..|.+++. .+ .+++++.+.+. .. . +++.+..+ |.+--
T Consensus 2 ~ilv~~e~~~g~l~~~~~eal~~A~~L~e-~g~~~V~av~~G~~---~~-~---------------~~~~a~a~-GaDkv 60 (320)
T 1o97_D 2 KILVIAEHRRNDLRPVSLELIGAANGLKK-SGEDKVVVAVIGSQ---AD-A---------------FVPALSVN-GVDEL 60 (320)
T ss_dssp EEEEECCEETTEECTHHHHHHHHHHHHCS-STTCEEEEEEESTT---GG-G---------------GHHHHCBT-TCSEE
T ss_pred eEEEEEeCcCCCcCHHHHHHHHHHHHHhh-CCCCcEEEEEECCc---HH-H---------------HHHHHHhc-CCceE
Confidence 3566554 24678999999999987 66 58888877653 10 1 22211112 44433
Q ss_pred EEEee---CCC---HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 79 IIVTE---GDQ---EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 79 ~~v~~---G~~---~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
..+-. +.+ .+..|.+.+++.++|+|++|....+ ..++-++..+...|.+
T Consensus 61 ~~v~d~~l~~~~~~~a~~La~~i~~~~pdlVL~g~ts~G-----~~laprlAa~L~~~~v 115 (320)
T 1o97_D 61 VVVKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDS-----LGYASSLASKTGYGFA 115 (320)
T ss_dssp EEEECSCSSCCHHHHHHHHHHHHHHHCCSEEEEECSHHH-----HTTHHHHHHTSSCEEE
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHhcCCCEEEEeCCCch-----hhHHHHHHHHhCCCcc
Confidence 32222 221 2567788888889999999985421 1244456666666654
No 143
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=32.38 E-value=32 Score=26.21 Aligned_cols=36 Identities=22% Similarity=-0.005 Sum_probs=25.7
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLH 38 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llh 38 (211)
-++|++++-++-.+..+.+..-.|.+..|.++.++-
T Consensus 19 ~k~IllgvTGsiaa~k~~~lv~~L~~~~g~~V~vv~ 54 (206)
T 1qzu_A 19 KFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVT 54 (206)
T ss_dssp SEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEE
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 479999999999988888777666542576665553
No 144
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=32.10 E-value=64 Score=24.37 Aligned_cols=35 Identities=11% Similarity=-0.066 Sum_probs=27.1
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEE
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLH 38 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llh 38 (211)
++|++++-|+-.+..+++..-.|.+..|.+++++-
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~~~g~~V~vv~ 35 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVM 35 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEEE
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHhccCCEEEEEE
Confidence 38999999999888888887777654478776554
No 145
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=31.02 E-value=96 Score=25.84 Aligned_cols=78 Identities=6% Similarity=-0.033 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
..+++.+.+|.++|.+...+|+++|=... ...+ . -..+.+.+..+++++++++...++. .+-.++.
T Consensus 170 ~~~eRiar~AFe~A~~rrkkVt~v~KaNv---lk~~--~-------lf~~~~~eva~eypdI~~~~~~vD~--~~m~lv~ 235 (363)
T 1cnz_A 170 FEIERIARIAFESARKRRRKVTSIDKANV---LQSS--I-------LWREIVNDVAKTYPDVELAHMYIDN--ATMQLIK 235 (363)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTT---CHHH--H-------HHHHHHHHHHTTCTTSEEEEEEHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECCcc---cccc--h-------hHHHHHHHHHHHCCCceEeeeeHHH--HHHHHhh
Confidence 45788888999999887777887775432 2111 1 1123344555568888888764432 3444443
Q ss_pred HHHHhCCCEEEEec
Q 028280 94 LVREIGASALVVGL 107 (211)
Q Consensus 94 ~a~~~~adLIVmG~ 107 (211)
- -.+.|.||+..
T Consensus 236 ~--P~~FDVivt~N 247 (363)
T 1cnz_A 236 D--PSQFDVLLCSN 247 (363)
T ss_dssp C--GGGCSEEEECH
T ss_pred C--cccceEEEECC
Confidence 3 24678777653
No 146
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=30.64 E-value=33 Score=25.86 Aligned_cols=111 Identities=10% Similarity=-0.029 Sum_probs=60.2
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
-++|++++-|+-.+..+.+..-.|.+ .|.++.++-.- ........ +.++. ..+. +-...
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~T~--------~A~~fi~~------~~~~~----l~~~-v~~~~- 66 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKS-FFKEIRVVMTK--------TAEDLIPA------HTVSY----FCDH-VYSEH- 66 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTT-TSSEEEEEECH--------HHHHHSCH------HHHGG----GSSE-EECTT-
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEEch--------hHHHHHHH------HHHHH----hcCC-Eeccc-
Confidence 37999999999998888887766654 57777655321 11011100 01111 1121 11111
Q ss_pred eCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cc---cHHHHHHccCCceEEEEcC
Q 028280 83 EGDQEGARIAALVREIGASALVVGLHDRSFLHK--LA---MSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 83 ~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~g---s~a~~vl~~a~~PVLvV~~ 136 (211)
.+. ...+....-...+|++|+..-.-+.+.+ .| +....++....+||++++.
T Consensus 67 ~~~--~~~~~hi~l~~~aD~~vIaPaTanTlAKiA~GiaDnLlt~~a~a~~~pvvl~Pa 123 (194)
T 1p3y_1 67 GEN--GKRHSHVEIGRWADIYCIIPATANILGQTANGVAMNLVATTVLAHPHNTIFFPN 123 (194)
T ss_dssp CSS--SCCCCHHHHHHHCSEEEEEEECHHHHHHHHTTCCSSHHHHHHHHSSSCCEEEEC
T ss_pred ccc--CCCcCcccccccCCEEEEeCCCHHHHHHHHhhccCCHHHHHHHHcCCCEEEEEC
Confidence 111 0011111111348999999877766665 33 2445555668999999975
No 147
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=30.63 E-value=2.1e+02 Score=22.94 Aligned_cols=68 Identities=10% Similarity=0.049 Sum_probs=36.9
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHc---cCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISS---SFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~---~a~~PVLvV~~~ 137 (211)
+.+.+.+ .+++++.....+..-+..+...+...++|+||+... -+. +..++..+.. ...+|+.+++-+
T Consensus 49 i~~~l~~-~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GG-DGT---l~~v~~~l~~~~~~~~~plgiiP~G 119 (332)
T 2bon_A 49 AIMLLRE-EGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGG-DGT---INEVSTALIQCEGDDIPALGILPLG 119 (332)
T ss_dssp HHHHHHT-TTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEES-HHH---HHHHHHHHHHCCSSCCCEEEEEECS
T ss_pred HHHHHHH-cCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEcc-chH---HHHHHHHHhhcccCCCCeEEEecCc
Confidence 3344443 366666654442213445554444557887766532 222 3345555553 467899999764
No 148
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=30.37 E-value=2e+02 Score=24.01 Aligned_cols=34 Identities=32% Similarity=0.345 Sum_probs=29.3
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEE
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLL 37 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll 37 (211)
++|+++.|++.....|...++......|..+.++
T Consensus 288 ~~vil~~D~D~AG~~Aa~r~~~~l~~~g~~~~v~ 321 (407)
T 2au3_A 288 KKVYILYDGDDAGRKAMKSAIPLLLSAGVEVYPV 321 (407)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 6899999999999999998888888778777654
No 149
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=30.33 E-value=1.1e+02 Score=25.49 Aligned_cols=78 Identities=9% Similarity=0.074 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
..+++.+.+|.++|.+...+|+++|=... ...+ . -..+.+.+..+++++++++...++. .+-.++.
T Consensus 165 ~~~eRiar~AFe~A~~rrkkVt~v~KaNv---lk~~--~-------lf~~~~~eva~eypdI~~~~~~vD~--~~mqlv~ 230 (358)
T 1a05_A 165 DEIRRIAHVAFRAAQGRRKQLCSVDKANV---LETT--R-------LWREVVTEVARDYPDVRLSHMYVDN--AAMQLIR 230 (358)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTT---CHHH--H-------HHHHHHHHHGGGCTTSEEEEEEHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEECCcc---cccc--h-------hHHHHHHHHHHHCCCceEEeeeHHH--HHHHHHh
Confidence 45788888899999887777887775432 2111 1 1223455555678888888764432 3444443
Q ss_pred HHHHhCCCEEEEec
Q 028280 94 LVREIGASALVVGL 107 (211)
Q Consensus 94 ~a~~~~adLIVmG~ 107 (211)
- -.+.|.||+..
T Consensus 231 ~--P~~FDVivt~N 242 (358)
T 1a05_A 231 A--PAQFDVLLTGN 242 (358)
T ss_dssp C--GGGCSEEEECH
T ss_pred C--CCcccEEEecC
Confidence 2 34678777753
No 150
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=29.59 E-value=1e+02 Score=25.92 Aligned_cols=78 Identities=10% Similarity=0.091 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
..+++.+.+|.++|.+...+|+++|=.. ....+ .. ..+.+.+..+++++++++...++. .+-.++.
T Consensus 186 ~~~eRIar~AFe~A~~rrkkVT~v~KaN---Vl~t~--gl-------fr~~~~eva~eYPdV~~~~~~VD~--~amqLV~ 251 (390)
T 3u1h_A 186 EEIERIIRKAFELALTRKKKVTSVDKAN---VLESS--RL-------WREVAEEVAKEYPDVELEHMLVDN--AAMQLIR 251 (390)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTT---TCHHH--HH-------HHHHHHHHHTTCTTSEEEEEEHHH--HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHcCCceEEEECCc---ccccc--hH-------HHHHHHHHHhHCCCCeEEeeeHHH--HHHHHHh
Confidence 4578888999999988878888877432 22111 11 122344555568899888765433 3444444
Q ss_pred HHHHhCCCEEEEec
Q 028280 94 LVREIGASALVVGL 107 (211)
Q Consensus 94 ~a~~~~adLIVmG~ 107 (211)
- -.+.|.||+..
T Consensus 252 ~--P~~FDViVt~N 263 (390)
T 3u1h_A 252 N--PRQFDVIVTEN 263 (390)
T ss_dssp C--GGGCSEEEECH
T ss_pred C--cccCcEEEecc
Confidence 2 34678777753
No 151
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=29.40 E-value=2e+02 Score=22.45 Aligned_cols=47 Identities=11% Similarity=-0.043 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccc---cccHHHHHHccCCceEEEE
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHK---LAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~---~gs~a~~vl~~a~~PVLvV 134 (211)
..+.|.+..++.++|+|+.- .+.++.-. .+..+...++.+++|++.-
T Consensus 136 l~~~l~~~ir~~~PdvV~t~-~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~ 185 (273)
T 3dff_A 136 VADDIRSIIDEFDPTLVVTC-AAIGEHPDHEATRDAALFATHEKNVPVRLW 185 (273)
T ss_dssp HHHHHHHHHHHHCCSEEEEE-CCTTCCHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEC-CCCCCChHHHHHHHHHHHHHHHcCCCEEEe
Confidence 44567788889999999984 33322221 6666667777778887765
No 152
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=29.25 E-value=1.8e+02 Score=21.88 Aligned_cols=106 Identities=12% Similarity=0.115 Sum_probs=57.8
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
+||.|-+.++...-.++-.+...- ..+.++.+|-..++.. . ..+++.+. |+.+...-..
T Consensus 1 ~ri~vl~Sg~gsnl~ali~~~~~~-~~~~~i~~Vis~~~~~----~---------------~~~~A~~~-gIp~~~~~~~ 59 (212)
T 1jkx_A 1 MNIVVLISGNGSNLQAIIDACKTN-KIKGTVRAVFSNKADA----F---------------GLERARQA-GIATHTLIAS 59 (212)
T ss_dssp CEEEEEESSCCHHHHHHHHHHHTT-SSSSEEEEEEESCTTC----H---------------HHHHHHHT-TCEEEECCGG
T ss_pred CEEEEEEECCcHHHHHHHHHHHcC-CCCceEEEEEeCCCch----H---------------HHHHHHHc-CCcEEEeCcc
Confidence 367787777776655555444322 2345655544332211 0 12333333 7765442111
Q ss_pred C-CCH---HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 84 G-DQE---GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 84 G-~~~---~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
. .+. .+++.+..++.++|+||+...++-.- ..++...+..++=+.+.
T Consensus 60 ~~~~r~~~~~~~~~~l~~~~~Dliv~agy~~il~-------~~~l~~~~~~~iNiHpS 110 (212)
T 1jkx_A 60 AFDSREAYDRELIHEIDMYAPDVVVLAGFMRILS-------PAFVSHYAGRLLNIHPS 110 (212)
T ss_dssp GCSSHHHHHHHHHHHHGGGCCSEEEESSCCSCCC-------HHHHHHTTTSEEEEESS
T ss_pred cccchhhccHHHHHHHHhcCCCEEEEeChhhhCC-------HHHHhhccCCEEEEccC
Confidence 1 101 36788888999999999987654322 25666666666666653
No 153
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=28.85 E-value=2.2e+02 Score=22.53 Aligned_cols=62 Identities=8% Similarity=0.037 Sum_probs=37.5
Q ss_pred CCcEEEEEeeCCCHHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+.+-.-+...+ ..++| .+.|++.++|-+++...-...... +-.--..|...++.||++-.-
T Consensus 69 r~pviaGvg~~~-t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 134 (292)
T 2vc6_A 69 RVPVIAGAGSNS-TAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNI 134 (292)
T ss_dssp SSCBEEECCCSS-HHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CCcEEEecCCcc-HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 344443333333 66654 577888999999888764322221 223334677788999998653
No 154
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=28.84 E-value=2.4e+02 Score=23.01 Aligned_cols=51 Identities=16% Similarity=0.110 Sum_probs=33.7
Q ss_pred CHHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 86 QEGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 86 ~~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+..++| .+.|++.++|-+++...-...... +-.--..|...++.||++-.-
T Consensus 111 st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~ 165 (343)
T 2v9d_A 111 NARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNF 165 (343)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 366655 577888999999888764322222 333344677788999998654
No 155
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=28.73 E-value=67 Score=26.89 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=37.1
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCC---CCcccc-ccc-HHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHD---RSFLHK-LAM-SHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~---~~~~~~-~gs-~a~~vl~~a~~PVLvV~~ 136 (211)
|+++.. +.++ .... ..++.++|+|++|+.. .+.+-. .|+ ...-+.++.++|++|+-+
T Consensus 233 GIpvtl--I~Ds-a~~~---~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap 294 (374)
T 2yvk_A 233 GIDVTL--ITDS-MAAH---TMKEKQISAVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAP 294 (374)
T ss_dssp TCEEEE--ECGG-GHHH---HHHHTTCCEEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred CCCEEE--Eehh-HHHH---HhhhcCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecc
Confidence 666554 3333 3333 3345679999999986 344444 888 333567778999999865
No 156
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=28.65 E-value=2.3e+02 Score=22.90 Aligned_cols=51 Identities=12% Similarity=0.099 Sum_probs=33.9
Q ss_pred CHHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 86 QEGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 86 ~~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+..++| .+.|++.++|-+++...--..... +-.--..|...++.||++-.-
T Consensus 114 st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~ 168 (332)
T 2r8w_A 114 RTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNN 168 (332)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 366665 577888999999988764332222 333334677788999998754
No 157
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=28.56 E-value=2.2e+02 Score=22.65 Aligned_cols=50 Identities=12% Similarity=0.077 Sum_probs=33.8
Q ss_pred HHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 87 EGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
..++| .+.|++.++|-+++-..--..... +-.--..|...++.||++-.-
T Consensus 93 t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 146 (306)
T 1o5k_A 93 TEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNV 146 (306)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 66655 577888999999888764322222 333445678888999998654
No 158
>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}
Probab=28.09 E-value=63 Score=24.79 Aligned_cols=22 Identities=5% Similarity=0.055 Sum_probs=15.3
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHh
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQN 26 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~l 26 (211)
||+.++.|+.|+. .+++.+-++
T Consensus 1 m~~~~livALD~~----~al~l~~~l 22 (222)
T 4dbe_A 1 MLKSRVILAMDKP----LSYQVLKEM 22 (222)
T ss_dssp -CCCCEEEEESSC----CCHHHHHHH
T ss_pred CCCCCeEEECCHH----HHHHHHHHh
Confidence 8899999999998 444444433
No 159
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=27.72 E-value=1.1e+02 Score=25.36 Aligned_cols=78 Identities=9% Similarity=0.040 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
..+++.+.+|.++|.+...+|+++|=.. ....+ . -..+.+.+..+++++++++...++. .+-.++.
T Consensus 167 ~~~eRIar~AFe~A~~rrkkVT~v~KaN---vl~t~--g-------lf~~~~~eva~eypdV~~~~~~VD~--~am~lv~ 232 (361)
T 3udu_A 167 KEIERIARIAFESARIRKKKVHLIDKAN---VLASS--I-------LWREVVANVAKDYQDINLEYMYVDN--AAMQIVK 232 (361)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEECTT---TCHHH--H-------HHHHHHHHHGGGCTTSEEEEEEHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECch---hhccc--h-------HHHHHHHHHHHHCCCCeEEeeeHHH--HHHHHHh
Confidence 4578888888888887777888877432 22111 1 1223355556678899888765432 3444443
Q ss_pred HHHHhCCCEEEEec
Q 028280 94 LVREIGASALVVGL 107 (211)
Q Consensus 94 ~a~~~~adLIVmG~ 107 (211)
+-.+.|.||+..
T Consensus 233 --~P~~FDViVt~N 244 (361)
T 3udu_A 233 --NPSIFDVMLCSN 244 (361)
T ss_dssp --CGGGCSEEEECH
T ss_pred --CcccCcEEEecc
Confidence 234678777753
No 160
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=27.53 E-value=1.3e+02 Score=25.54 Aligned_cols=78 Identities=3% Similarity=-0.032 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
..+++.+.+|.++|.....+|+++|=.. ..... . -..+.+.+..+++++++++...++. .+-.++.
T Consensus 207 ~~~eRIar~AFe~A~~rrkkVT~v~KaN---Vlk~s--g-------lf~~~~~eva~eYPdV~~~~~~VD~--~amqLV~ 272 (405)
T 3r8w_A 207 HEIDRIARVAFETARKRRGKLCSVDKAN---VLEAS--I-------LWRKRVTALASEYPDVELSHMYVDN--AAMQLVR 272 (405)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTT---TCHHH--H-------HHHHHHHHHGGGSTTSEEEEEEHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEECch---hhccc--c-------HHHHHHHHHHhHCCCCeEEeeeHHH--HHHHHHh
Confidence 4578888889999887778888877422 22111 1 1223355555668899888765432 3444443
Q ss_pred HHHHhCCCEEEEec
Q 028280 94 LVREIGASALVVGL 107 (211)
Q Consensus 94 ~a~~~~adLIVmG~ 107 (211)
- -.+.|.||+..
T Consensus 273 ~--P~~FDViVt~N 284 (405)
T 3r8w_A 273 D--PKQFDTIVTNN 284 (405)
T ss_dssp C--GGGCSEEEECH
T ss_pred C--hhhCcEEeecc
Confidence 2 34678887653
No 161
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=27.38 E-value=66 Score=26.63 Aligned_cols=57 Identities=14% Similarity=0.093 Sum_probs=36.9
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCC---CCcccc-ccc-HHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHD---RSFLHK-LAM-SHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~---~~~~~~-~gs-~a~~vl~~a~~PVLvV~~ 136 (211)
|+++.. ..++ .... ..++.++|++++|+.. .+.+-. .|+ ..--+.++.++|++|+-+
T Consensus 208 GI~vtl--I~Ds-a~~~---~M~~~~Vd~VivGAd~V~aNG~v~NKiGT~~lAl~Ak~~~vPfyV~ap 269 (347)
T 1t9k_A 208 GIEVYV--ITDN-MAGW---LMKRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAP 269 (347)
T ss_dssp TCEEEE--ECGG-GHHH---HHHTTCCSEEEECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred CCCEEE--Eehh-HHHH---HhhcCCCCEEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecc
Confidence 666554 3333 3333 3345579999999986 334444 888 333567778899999864
No 162
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=27.26 E-value=2.3e+02 Score=22.35 Aligned_cols=50 Identities=8% Similarity=-0.013 Sum_probs=32.5
Q ss_pred HHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 87 EGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
..++| .+.|++.++|-+++...--..... +-.--..|...++.||++-.-
T Consensus 82 t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 135 (292)
T 2ojp_A 82 TAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNV 135 (292)
T ss_dssp HHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECC
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 55554 456677899998888764322222 333445678888999998654
No 163
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=27.06 E-value=61 Score=25.26 Aligned_cols=32 Identities=31% Similarity=0.335 Sum_probs=24.1
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEec
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFP 41 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~ 41 (211)
.++|++++|.++.. ++.|...++.+.+.|=-.
T Consensus 35 V~~I~~~lD~t~~v-------i~eAi~~~adlIitHHP~ 66 (247)
T 1nmo_A 35 VQKIVTGVTASQAL-------LDEAVRLGADAVIVHHGY 66 (247)
T ss_dssp CCEEEEEEECCHHH-------HHHHHHTTCSEEEEEECS
T ss_pred cCEEEEEEcCCHHH-------HHHHHhCCCCEEEECCch
Confidence 68999999999853 445555778888888643
No 164
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=27.06 E-value=3.1e+02 Score=23.74 Aligned_cols=37 Identities=11% Similarity=0.086 Sum_probs=28.5
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
-+++++++.+.-+|-.++.++.+. .|.+++.+|+...
T Consensus 227 ~~~vvvalSGGvDSsv~a~ll~~a---~G~~v~av~v~~g 263 (525)
T 1gpm_A 227 DDKVILGLSGGVDSSVTAMLLHRA---IGKNLTCVFVDNG 263 (525)
T ss_dssp TCEEEEECCSSHHHHHHHHHHHHH---HGGGEEEEEEECS
T ss_pred ccceEEEecCCCCHHHHHHHHHHH---hCCCEEEEEEeCC
Confidence 368999999998888887766553 2578999998754
No 165
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=27.02 E-value=2.3e+02 Score=22.27 Aligned_cols=107 Identities=9% Similarity=0.021 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhccCCCEEEEEEEecCCCcc-----chHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee--------
Q 028280 17 RAALLWALQNLLRFGDVVTLLHVFPSLNSR-----NRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE-------- 83 (211)
Q Consensus 17 ~~al~~A~~la~~~~a~l~llhV~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~-------- 83 (211)
......++.+|+..|-.|- -|..-+.... .....+++........-.|+.++.. .|.++...--.
T Consensus 37 p~~M~~Tv~lA~~~gV~IG-AHPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~-~G~~l~hVKPHGALYN~~a 114 (252)
T 1xw8_A 37 AQIMQACVREAIKNGVAIG-AHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARA-QGGVMRHVKPHGMLYNQAA 114 (252)
T ss_dssp HHHHHHHHHHHHHHTCEEE-EECCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHHH-TTCCEEEECCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCeee-cCCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-cCCEeEEeCcCHHHHHHHh
Confidence 3445566667776665543 2333221111 0111233334444445567777775 37777664322
Q ss_pred -CCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEE
Q 028280 84 -GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLA 133 (211)
Q Consensus 84 -G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLv 133 (211)
....+++|++.++..+.+|+++|..+ |...+..++..+|++-
T Consensus 115 ~d~~~A~av~~av~~~d~~L~l~~l~g--------s~~~~~A~~~Gl~~~~ 157 (252)
T 1xw8_A 115 KEAQLADAIARAVYACDPALILVGLAG--------SELIRAGKQYGLTTRE 157 (252)
T ss_dssp TCHHHHHHHHHHHHHHCTTCEEEEETT--------SHHHHHHHHTTCCEEE
T ss_pred hCHHHHHHHHHHHHHhCCCcEEEecCC--------hHHHHHHHHcCCcEEE
Confidence 22368999999999999999999543 3344788888988874
No 166
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=27.00 E-value=2.4e+02 Score=22.43 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=33.3
Q ss_pred HHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 87 EGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
..++| .+.|++.++|-+++...--..... +-.--..|...++.||++-.-
T Consensus 93 t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 146 (301)
T 1xky_A 93 THASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNV 146 (301)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 56554 577888999999888764322222 333344677788999998654
No 167
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=26.98 E-value=2.3e+02 Score=22.33 Aligned_cols=59 Identities=10% Similarity=0.064 Sum_probs=35.8
Q ss_pred EEEEeeCC-CHHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 78 EIIVTEGD-QEGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 78 ~~~v~~G~-~~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+.+-.|. +..++| .+.|++.++|-+++...--..... +-.--..|...++.||++-.-
T Consensus 75 pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 138 (293)
T 1f6k_A 75 ALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYSI 138 (293)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred eEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 33344443 355554 577888999999888764322222 333334566777899998653
No 168
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=26.98 E-value=82 Score=26.26 Aligned_cols=79 Identities=9% Similarity=-0.060 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHhhccCCC-EEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGD-VVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIA 92 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a-~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~ 92 (211)
..+++.+.+|.++|.+.+. +|+++|=..- .... .... .+.+.+..+++++++++...++. .+-.++
T Consensus 166 ~~~eRIar~AFe~A~~r~~kkVt~v~KaNv---lk~s-~glf-------~~~~~eva~eypdv~~~~~~vD~--~am~lv 232 (364)
T 3flk_A 166 RGVDRILKYAFDLAEKRERKHVTSATKSNG---MAIS-MPYW-------DKRTEAMAAHYPHVSWDKQHIDI--LCARFV 232 (364)
T ss_dssp HHHHHHHHHHHHHHHHSSSCEEEEEECTTT---STTH-HHHH-------HHHHHHHHTTCTTCEEEEEEHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEECcch---hhhH-HHHH-------HHHHHHHHHHCCCceEEeeEHHH--HHHHHH
Confidence 4578888999999988766 6888874322 1111 0111 12344555568888888765433 344444
Q ss_pred HHHHHhCCCEEEEec
Q 028280 93 ALVREIGASALVVGL 107 (211)
Q Consensus 93 ~~a~~~~adLIVmG~ 107 (211)
.- -.+.|.||+..
T Consensus 233 ~~--P~~FDVivt~N 245 (364)
T 3flk_A 233 LQ--PERFDVVVASN 245 (364)
T ss_dssp HC--GGGCSEEEECH
T ss_pred hC--cccCcEEEecc
Confidence 32 34678777753
No 169
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=26.97 E-value=1.3e+02 Score=25.14 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=20.2
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEe
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVF 40 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~ 40 (211)
|||++|||.- +.. .++. .+.-+++.|-+++++...
T Consensus 4 ~~~k~ILI~g--~g~--~~~~-i~~a~~~~G~~vv~v~~~ 38 (461)
T 2dzd_A 4 RRIRKVLVAN--RGE--IAIR-VFRACTELGIRTVAIYSK 38 (461)
T ss_dssp CCCSEEEECS--CHH--HHHH-HHHHHHHHTCEEEEEECG
T ss_pred CcCcEEEEEC--CcH--HHHH-HHHHHHHcCCEEEEEECC
Confidence 6789999873 322 2222 233344567887777544
No 170
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=26.90 E-value=2.4e+02 Score=22.38 Aligned_cols=51 Identities=10% Similarity=0.081 Sum_probs=33.8
Q ss_pred CHHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 86 QEGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 86 ~~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+..++| .+.|++.++|-+++...--..... +-.--..|...++.||++-.-
T Consensus 80 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 134 (297)
T 2rfg_A 80 NPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNI 134 (297)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 366655 577888999999998764332222 333334677788999998654
No 171
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=26.82 E-value=68 Score=24.91 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
..++++.+.+.++|+|.+|-...-....+..+...+ ++...|+++..-
T Consensus 22 t~~~~~~l~~~GaD~IelG~S~g~t~~~~~~~v~~i-r~~~~Pivl~~y 69 (234)
T 2f6u_A 22 TDEIIKAVADSGTDAVMISGTQNVTYEKARTLIEKV-SQYGLPIVVEPS 69 (234)
T ss_dssp CHHHHHHHHTTTCSEEEECCCTTCCHHHHHHHHHHH-TTSCCCEEECCS
T ss_pred cHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHHh-cCCCCCEEEecC
Confidence 355677888899999999973222233344455555 447899999754
No 172
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=26.77 E-value=1.2e+02 Score=19.06 Aligned_cols=48 Identities=8% Similarity=0.066 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
..+++ +...+..+|++++...-.+.-. + .+...+-...++|++++-..
T Consensus 34 ~~~a~-~~~~~~~~dlvl~D~~l~~~~g-~-~~~~~l~~~~~~~ii~~s~~ 81 (120)
T 2a9o_A 34 GREAL-EQFEAEQPDIIILDLMLPEIDG-L-EVAKTIRKTSSVPILMLSAK 81 (120)
T ss_dssp HHHHH-HHHHHHCCSEEEECSSCSSSCH-H-HHHHHHHHHCCCCEEEEESC
T ss_pred HHHHH-HHHHhCCCCEEEEeccCCCCCH-H-HHHHHHHhCCCCCEEEEecC
Confidence 44444 4556678999999876543111 0 13333434467899888643
No 173
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=26.71 E-value=67 Score=18.03 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=19.3
Q ss_pred cEEEEEeeCCCHHHHHHHHHHHhCCCE
Q 028280 76 NVEIIVTEGDQEGARIAALVREIGASA 102 (211)
Q Consensus 76 ~~~~~v~~G~~~~~~I~~~a~~~~adL 102 (211)
++...+..+.|..++|+.+|++.+.|-
T Consensus 11 kvslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 11 KVSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred eeEEEEeeCCchhHHHHHHHHHccchh
Confidence 345555554448999999999987764
No 174
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=26.65 E-value=1.3e+02 Score=19.54 Aligned_cols=48 Identities=10% Similarity=-0.058 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHcc---CCceEEEEcCCC
Q 028280 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSS---FNCRVLAIKQPA 138 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~---a~~PVLvV~~~~ 138 (211)
++..+.+++..+|+|++...-.+.-. -.+...+-.. ..+||+++-...
T Consensus 37 ~~a~~~l~~~~~dlvi~d~~l~~~~g--~~~~~~l~~~~~~~~~pii~~s~~~ 87 (133)
T 3nhm_A 37 ASGLQQALAHPPDVLISDVNMDGMDG--YALCGHFRSEPTLKHIPVIFVSGYA 87 (133)
T ss_dssp HHHHHHHHHSCCSEEEECSSCSSSCH--HHHHHHHHHSTTTTTCCEEEEESCC
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCCH--HHHHHHHHhCCccCCCCEEEEeCCC
Confidence 44445566778999999976433111 0133333332 368999987543
No 175
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=26.33 E-value=59 Score=24.60 Aligned_cols=35 Identities=14% Similarity=-0.000 Sum_probs=26.3
Q ss_pred CCeEEEEecCCHHHH-HHHHHHHHhhccCCCEEEEEE
Q 028280 3 VKKIVVIVEDVDAAR-AALLWALQNLLRFGDVVTLLH 38 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~-~al~~A~~la~~~~a~l~llh 38 (211)
.++|++++-|+-..- .++...-.|.+ .|.+++++-
T Consensus 7 ~k~I~lgiTGs~aa~~k~~~ll~~L~~-~g~eV~vv~ 42 (201)
T 3lqk_A 7 GKHVGFGLTGSHCTYHEVLPQMERLVE-LGAKVTPFV 42 (201)
T ss_dssp TCEEEEECCSCGGGGGGTHHHHHHHHH-TTCEEEEEC
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHhh-CCCEEEEEE
Confidence 469999999998777 78877666655 577766553
No 176
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=26.31 E-value=1.3e+02 Score=25.18 Aligned_cols=78 Identities=9% Similarity=0.017 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
..+++.+.+|.++|.+...+|+++|=.. ....+ . -..+.+.+..+++++++++...++. .+-.++.
T Consensus 179 ~~~eRIar~AFe~A~~rrkkVT~v~KaN---vl~~~--g-------lf~~~~~eva~eypdV~~~~~~VD~--~am~lv~ 244 (375)
T 3vmk_A 179 KEIRRIAKIAFESAQGRRKKVTSVDKAN---VLACS--V-------LWREVVEEVAKDYPDVELEHIYIDN--ATMQLLR 244 (375)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTT---TCHHH--H-------HHHHHHHHHHTTCTTSEEEEEEHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEECch---hhhhh--h-------HHHHHHHHHHHHCCCceEeeeeHHH--HHHHHHh
Confidence 4578888899999988878888877432 22111 1 1223355555568898888765433 3444444
Q ss_pred HHHHhCCCEEEEec
Q 028280 94 LVREIGASALVVGL 107 (211)
Q Consensus 94 ~a~~~~adLIVmG~ 107 (211)
- -.+.|.||+..
T Consensus 245 ~--P~~FDViVt~N 256 (375)
T 3vmk_A 245 R--PNEFDVMLCSN 256 (375)
T ss_dssp C--GGGCSEEEECH
T ss_pred C--cccCcEEEECc
Confidence 2 34678887753
No 177
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside polyph protein-ligand complex, transferase; HET: DNA ATP; 2.00A {Staphylococcus aureus} PDB: 4e2k_A* 4edk_A* 4edr_A* 4edt_A* 4edv_A* 4ee1_A*
Probab=26.23 E-value=1.8e+02 Score=23.74 Aligned_cols=34 Identities=26% Similarity=0.219 Sum_probs=29.5
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEE
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLL 37 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll 37 (211)
++|+++.|++.....|...++......|..+.++
T Consensus 196 ~~Vil~~D~D~AG~~Aa~r~~~~l~~~g~~v~v~ 229 (329)
T 4edg_A 196 SNITLMFDGDFAGSEATLKTGQHLLQQGLNVFVI 229 (329)
T ss_dssp SEEEECCCSSHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 6899999999999999999999988888776654
No 178
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=26.21 E-value=99 Score=25.42 Aligned_cols=79 Identities=16% Similarity=0.091 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhccC-CCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHH
Q 028280 14 DAARAALLWALQNLLRF-GDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIA 92 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~-~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~ 92 (211)
..+++.+.+|.++|.+. ..+|+++|=...... .+ .. ..+.+.+..+++++++++...++. ..-.++
T Consensus 144 ~~~eRiar~AF~~A~~r~rkkvt~v~KaNvlk~--t~--gl-------f~~~~~eva~eyp~I~~~~~~vD~--~~m~lv 210 (333)
T 1x0l_A 144 KASERIGRAALRIAEGRPRKTLHIAHKANVLPL--TQ--GL-------FLDTVKEVAKDFPLVNVQDIIVDN--CAMQLV 210 (333)
T ss_dssp HHHHHHHHHHHHHHHTSTTCEEEEEECTTTCTT--HH--HH-------HHHHHHHHHTTCTTSEEEEEEHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEecCccchh--hh--HH-------HHHHHHHHHHHCCCceEEEEEHHH--HHHHHh
Confidence 45788899999999987 467888874332111 11 11 122344555568888888765433 344444
Q ss_pred HHHHHhCCCEEEEec
Q 028280 93 ALVREIGASALVVGL 107 (211)
Q Consensus 93 ~~a~~~~adLIVmG~ 107 (211)
.- -.+.|.||+..
T Consensus 211 ~~--P~~FDVivt~N 223 (333)
T 1x0l_A 211 MR--PERFDVIVTTN 223 (333)
T ss_dssp HC--GGGCSEEEECH
T ss_pred hC--cccceEEEEcC
Confidence 32 34678777653
No 179
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=26.08 E-value=2.4e+02 Score=22.23 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=36.7
Q ss_pred EEEEeeCC-CHHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 78 EIIVTEGD-QEGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 78 ~~~v~~G~-~~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+.+-.|. +..++| .+.|++.++|-+++...--..... +-.--..|...++.||++-.-
T Consensus 71 pviaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 134 (294)
T 2ehh_A 71 KVIAGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNI 134 (294)
T ss_dssp EEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred cEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 33344443 366655 577888999999888764322222 333334677788999998654
No 180
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=25.99 E-value=2.4e+02 Score=22.18 Aligned_cols=59 Identities=15% Similarity=0.216 Sum_probs=36.8
Q ss_pred EEEEeeCC-CHHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 78 EIIVTEGD-QEGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 78 ~~~v~~G~-~~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+.+-.|. +..++| .+.|++.++|-+++...--..... +-.--..|...++.||++-.-
T Consensus 71 pviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 134 (289)
T 2yxg_A 71 QVIAGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYNV 134 (289)
T ss_dssp EEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred cEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 33344443 355554 577888999999888764332222 333344677788999998654
No 181
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=25.90 E-value=2.6e+02 Score=22.42 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=37.6
Q ss_pred CCcEEEEEeeCCCHHHHHH--HHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARIA--ALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~--~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+.+-.-+ |.+..++|. +.|++.++|-+++...-...... +-.--..|...++.||++-..
T Consensus 81 rvpViaGv--g~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 145 (316)
T 3e96_A 81 RALVVAGI--GYATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYFK 145 (316)
T ss_dssp SSEEEEEE--CSSHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEEC
T ss_pred CCcEEEEe--CcCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 34444433 444766654 67888999999998654322221 333344666777899998763
No 182
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus}
Probab=25.85 E-value=58 Score=25.31 Aligned_cols=31 Identities=19% Similarity=0.157 Sum_probs=23.5
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVF 40 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~ 40 (211)
.++|++++|.++. .++.|...++.+.+.|=-
T Consensus 36 V~~I~~alD~t~~-------vi~eAi~~~adlIitHHp 66 (242)
T 2yyb_A 36 VRKVGAAVDAGEA-------IFRKALEEEVDFLIVHHG 66 (242)
T ss_dssp CCCEEEEEECSHH-------HHHHHHHTTCSEEEEEEC
T ss_pred cCEEEEEEcCCHH-------HHHHHHHCCCCEEEECCC
Confidence 6899999999984 344555578888888853
No 183
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=25.66 E-value=2.5e+02 Score=22.29 Aligned_cols=60 Identities=13% Similarity=0.015 Sum_probs=36.6
Q ss_pred EEEEEeeCC-CHHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCC-ceEEEEcC
Q 028280 77 VEIIVTEGD-QEGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFN-CRVLAIKQ 136 (211)
Q Consensus 77 ~~~~v~~G~-~~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~-~PVLvV~~ 136 (211)
+.+.+-.|. +..++| .+.|++.++|-+++...--..... +-.--..|...++ .||++-.-
T Consensus 81 vpViaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn~ 146 (303)
T 2wkj_A 81 IKLIAHVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNI 146 (303)
T ss_dssp SEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CcEEEecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 334444443 366655 577888999999888764322222 3333345667778 99998653
No 184
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=25.60 E-value=2.3e+02 Score=22.29 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=31.1
Q ss_pred HHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 87 EGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
..++| .+.|++.++|-+++...--..... +-.--..|...++.||++-.-
T Consensus 82 t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 135 (291)
T 3a5f_A 82 TAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNV 135 (291)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 55554 577888999999888764322211 212222456778899998654
No 185
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=25.47 E-value=2.6e+02 Score=22.27 Aligned_cols=58 Identities=17% Similarity=0.150 Sum_probs=36.1
Q ss_pred EEEeeCC-CHHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 79 IIVTEGD-QEGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 79 ~~v~~G~-~~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+.+-.|. +..++| .+.|++.++|-+++...--..... +-.--..|...++.||++-.-
T Consensus 88 viaGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 150 (304)
T 3cpr_A 88 LIAGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYDI 150 (304)
T ss_dssp EEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred EEecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3344443 366655 577888999999888764322222 333334677788999998654
No 186
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=25.36 E-value=1.5e+02 Score=19.46 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHc---cCCceEEEEcC
Q 028280 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISS---SFNCRVLAIKQ 136 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~---~a~~PVLvV~~ 136 (211)
.++..+.+++..+|+|++...-.+.-. -.+...+-. ...+||+++-.
T Consensus 39 ~~~a~~~l~~~~~dlvi~d~~l~~~~g--~~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 39 AAQALEQVARRPYAAMTVDLNLPDQDG--VSLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp HHHHHHHHHHSCCSEEEECSCCSSSCH--HHHHHHHHTSGGGTTCEEEEECT
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCH--HHHHHHHHhCcccCCCCEEEEec
Confidence 344555667788999999976443111 013333332 35799999865
No 187
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=25.33 E-value=2.1e+02 Score=22.47 Aligned_cols=116 Identities=10% Similarity=-0.049 Sum_probs=67.2
Q ss_pred EEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc-----chHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 8 VIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR-----NRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 8 v~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
|+..|--........++.+|+..|-.|-. |..-+.... .....+++........-.|+.++... |.++...--
T Consensus 33 IACGfHAGDp~~M~~tv~lA~~~gV~IGA-HPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~-G~~l~hVKP 110 (250)
T 2dfa_A 33 LACGFHGGSPGRILEAVRLAKAHGVAVGA-HPGFPDLVGFGRREMALSPEEVYADVLYQIGALSAFLKAE-GLPLHHVKP 110 (250)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHTTCEEEE-ECCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHT-TCCCCCBCC
T ss_pred hhccccCCCHHHHHHHHHHHHHcCCeEec-CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCEeEEecc
Confidence 33433333345566777788877766543 433332111 01122333344444455577777653 555444321
Q ss_pred e---------CCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEE
Q 028280 83 E---------GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLA 133 (211)
Q Consensus 83 ~---------G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLv 133 (211)
. ....+++|++.++..+.+|+++|.. ||...+..++..+|++-
T Consensus 111 HGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~--------gs~~~~~A~~~Gl~~~~ 162 (250)
T 2dfa_A 111 HGALYLKACRDRETARAIALAVKAFDPGLPLVVLP--------GTVYEEEARKAGLRVVL 162 (250)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEEECT--------TSHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC--------ChHHHHHHHHcCCcEEE
Confidence 1 2236899999999999999999954 33344788889998874
No 188
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=25.23 E-value=88 Score=25.34 Aligned_cols=42 Identities=17% Similarity=0.317 Sum_probs=28.3
Q ss_pred eCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 83 EGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 83 ~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
.|+++. --++....+++|.||+=....+..+ .+.+++.+||+
T Consensus 77 kgEsl~-DTarvLs~~~~D~iviR~~~~~~~~-------~la~~~~vPVI 118 (304)
T 3r7f_A 77 KGETLY-DTIRTLESIGVDVCVIRHSEDEYYE-------ELVSQVNIPIL 118 (304)
T ss_dssp SSSCHH-HHHHHHHHHTCCEEEEECSSTTCHH-------HHHHHCSSCEE
T ss_pred CCCCHH-HHHHHHHHhcCCEEEEecCChhHHH-------HHHHhCCCCEE
Confidence 356333 3344445677999999887766654 67788999954
No 189
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=25.19 E-value=1.4e+02 Score=19.12 Aligned_cols=48 Identities=6% Similarity=0.194 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
.++..+.+++.++|+|++...-.+.-. -.+...+-...++|++++-..
T Consensus 35 ~~~al~~~~~~~~dlii~D~~~p~~~g--~~~~~~lr~~~~~~ii~~t~~ 82 (120)
T 3f6p_A 35 GNEAVEMVEELQPDLILLDIMLPNKDG--VEVCREVRKKYDMPIIMLTAK 82 (120)
T ss_dssp HHHHHHHHHTTCCSEEEEETTSTTTHH--HHHHHHHHTTCCSCEEEEEES
T ss_pred HHHHHHHHhhCCCCEEEEeCCCCCCCH--HHHHHHHHhcCCCCEEEEECC
Confidence 344455667789999999987543211 013344445567899988643
No 190
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=24.95 E-value=1.5e+02 Score=19.52 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=33.2
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+++.+.+. |+++++....-.+..+. ..++|+|+.+..-...+.++ +..+...++||++|.+
T Consensus 24 l~~~~~~~-gi~~~i~~~~~~~~~~~------~~~~D~Ii~t~~l~~~~~~~----~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 24 IEKYAKSK-NINATIEAIAETRLSEV------VDRFDVVLLAPQSRFNKKRL----EEITKPKGIPIEIINT 84 (109)
T ss_dssp HHHHHHHH-TCSEEEEEECSTTHHHH------TTTCSEEEECSCCSSHHHHH----HHHHHHHTCCEEECCH
T ss_pred HHHHHHHC-CCCeEEEEecHHHHHhh------cCCCCEEEECCccHHHHHHH----HHHhcccCCCEEEECh
Confidence 44444443 67666543332213332 24689999998655433211 1222345789998864
No 191
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=24.93 E-value=2.7e+02 Score=22.33 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=38.2
Q ss_pred CCcEEEEEeeCCCHHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+.+-.-+...+ ..++| .+.|++.++|-+++...-...... +-.--..|...++.||++-.-
T Consensus 93 rvpViaGvg~~~-t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 158 (315)
T 3na8_A 93 RVPTIVSVSDLT-TAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNN 158 (315)
T ss_dssp SSCBEEECCCSS-HHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred CCcEEEecCCCC-HHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 344443332223 55554 467888999999998765332222 333445677788999998764
No 192
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=24.81 E-value=2.6e+02 Score=22.05 Aligned_cols=116 Identities=8% Similarity=-0.069 Sum_probs=68.8
Q ss_pred EEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc-----chHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 8 VIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR-----NRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 8 v~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
|+..|--........++.+|+..|-.|-. |..-+.... .....+++........-.|+.++... |.++...--
T Consensus 33 IACGfHAGDp~~M~~tv~lA~~~gV~IGA-HPgypDl~GFGRR~m~~s~~el~~~v~YQiGAL~a~a~~~-G~~l~hVKP 110 (255)
T 1v6t_A 33 VACGWHAGDPLVMRKTVRLAKENDVQVGA-HPGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKAE-GLELQHVKP 110 (255)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHTTCEEEE-ECCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEECC
T ss_pred hhccccCCCHHHHHHHHHHHHHcCCeEec-CCCCCcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCEeEEecc
Confidence 33433333345566777788877766543 433332111 01122333444444455677777753 777766432
Q ss_pred e---------CCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEE
Q 028280 83 E---------GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLA 133 (211)
Q Consensus 83 ~---------G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLv 133 (211)
. ....+++|++.++..+.+|+++|..+ |...+..++..+|++-
T Consensus 111 HGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~g--------s~~~~~A~~~Gl~~~~ 162 (255)
T 1v6t_A 111 HGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSN--------SRVADIAEEMGLKVAH 162 (255)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEETT--------CHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecCC--------hHHHHHHHHcCCcEEE
Confidence 2 22367899999999999999999643 3334678888888864
No 193
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=24.74 E-value=1.6e+02 Score=23.21 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHhCCCEEEEecCCCC---cccccccHHHHHHccCC----ceEEEE
Q 028280 86 QEGARIAALVREIGASALVVGLHDRS---FLHKLAMSHNDISSSFN----CRVLAI 134 (211)
Q Consensus 86 ~~~~~I~~~a~~~~adLIVmG~~~~~---~~~~~gs~a~~vl~~a~----~PVLvV 134 (211)
-+.+.|++.++++++|+|.+...-.. ....+..+.+.+ +... ++|++=
T Consensus 167 vp~e~iv~aa~e~~~d~VglS~l~t~~~~~~~~~~~~i~~L-~~~g~~~~i~vivG 221 (262)
T 1xrs_B 167 VANEDFIKKAVELEADVLLVSQTVTQKNVHIQNMTHLIELL-EAEGLRDRFVLLCG 221 (262)
T ss_dssp BCHHHHHHHHHHTTCSEEEEECCCCTTSHHHHHHHHHHHHH-HHTTCGGGSEEEEE
T ss_pred CCHHHHHHHHHHcCCCEEEEEeecCCccchHHHHHHHHHHH-HhcCCCCCCEEEEE
Confidence 37899999999999999999886554 222244444444 3333 666554
No 194
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=24.59 E-value=82 Score=26.20 Aligned_cols=50 Identities=8% Similarity=-0.050 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~ 136 (211)
-.+.+.+.+++.++|-||.-...--.... ......+.++..++|+|.+--
T Consensus 301 R~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~giP~l~ie~ 351 (385)
T 3o3m_B 301 RGSLIVDEVKKKDIDGVIFCMMKFCDPEEYDYPLVRKDIEDSGIPTLYVEI 351 (385)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeccCCCCccHhhHHHHHHHHHHCCCCEEEEEe
Confidence 57889999999999999998776554433 223445666889999999963
No 195
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=24.53 E-value=1.5e+02 Score=19.40 Aligned_cols=47 Identities=4% Similarity=-0.048 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHcc---CCceEEEEcCC
Q 028280 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSS---FNCRVLAIKQP 137 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~---a~~PVLvV~~~ 137 (211)
++..+.+++..+|+|++...-.+.-. ..+...+-.. ..+||+++-..
T Consensus 36 ~~a~~~~~~~~~dlvi~D~~l~~~~g--~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 36 KEALEQIDHHHPDLVILDMDIIGENS--PNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp HHHHHHHHHHCCSEEEEETTC--------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred HHHHHHHhcCCCCEEEEeCCCCCCcH--HHHHHHHHcCcccCCCCEEEEecC
Confidence 44445566778999999976432110 1244445444 46899998754
No 196
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=24.47 E-value=78 Score=24.12 Aligned_cols=35 Identities=9% Similarity=-0.120 Sum_probs=25.6
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLH 38 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llh 38 (211)
.-++|++++-++-.+..+++..-.|.+ .+ +++++-
T Consensus 18 ~~k~IllgvTGsiaa~k~~~ll~~L~~-~g-~V~vv~ 52 (209)
T 1mvl_A 18 RKPRVLLAASGSVAAIKFGNLCHCFTE-WA-EVRAVV 52 (209)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHHT-TS-EEEEEE
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHHHhc-CC-CEEEEE
Confidence 357999999999988888887777655 45 655443
No 197
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=23.85 E-value=1.3e+02 Score=20.73 Aligned_cols=45 Identities=11% Similarity=0.030 Sum_probs=28.0
Q ss_pred HHHHHHHHHhCCCEEEEecCCCC--cccccccHHHHHH---ccCCceEEEEcCC
Q 028280 89 ARIAALVREIGASALVVGLHDRS--FLHKLAMSHNDIS---SSFNCRVLAIKQP 137 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~~--~~~~~gs~a~~vl---~~a~~PVLvV~~~ 137 (211)
.+..+.+++..+|+|++.-.-.+ +++ +..++= ....+||+++-..
T Consensus 47 ~~al~~~~~~~~DlillD~~MP~mdG~e----l~~~ir~~~~~~~ipvI~lTa~ 96 (134)
T 3to5_A 47 LTALPMLKKGDFDFVVTDWNMPGMQGID----LLKNIRADEELKHLPVLMITAE 96 (134)
T ss_dssp HHHHHHHHHHCCSEEEEESCCSSSCHHH----HHHHHHHSTTTTTCCEEEEESS
T ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCHHH----HHHHHHhCCCCCCCeEEEEECC
Confidence 34445667789999999987553 322 333332 2246899998653
No 198
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=23.81 E-value=1.3e+02 Score=24.19 Aligned_cols=106 Identities=15% Similarity=0.151 Sum_probs=56.5
Q ss_pred CeEEEEecCCHH-HHHHHHHHHHhhcc----CCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEE
Q 028280 4 KKIVVIVEDVDA-ARAALLWALQNLLR----FGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVE 78 (211)
Q Consensus 4 k~ILv~vD~s~~-s~~al~~A~~la~~----~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~ 78 (211)
|++|-.-|++.+ -...++.|..+-.. ...+.. .+...++.- + . -.++..+.+.+|..+.
T Consensus 2 rh~ls~~dls~~ei~~ll~~A~~lk~~~~~~L~gk~~--~lF~e~STR--T--R----------~SFe~A~~~LGg~~i~ 65 (291)
T 3d6n_B 2 RSLISSLDLTREEVEEILKYAKEFKEGKEETIKASAV--LFFSEPSTR--T--R----------LSFEKAARELGIETYL 65 (291)
T ss_dssp CCBCCGGGCCHHHHHHHHHHHHHHHTTCCCCCCCEEE--EEESSCCHH--H--H----------HHHHHHHHHTTCEEEE
T ss_pred CccCchhhCCHHHHHHHHHHHHHHHhcccccCCCCEE--EEecCCCcc--H--H----------HHHHHHHHHhCCeEEE
Confidence 566666788866 56677777777542 222332 333322211 1 0 0122222233232222
Q ss_pred E-----EEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHH-HHccCCceEEE
Q 028280 79 I-----IVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHND-ISSSFNCRVLA 133 (211)
Q Consensus 79 ~-----~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~-vl~~a~~PVLv 133 (211)
. .+..|+++.+ .++....+.+|.||+=....+..+ . +.+++.+||+=
T Consensus 66 l~~~~ss~~kgEsl~D-Tarvls~~~~D~iviR~~~~~~~~-------~~la~~~~vPVIN 118 (291)
T 3d6n_B 66 VSGSESSTVKGESFFD-TLKTFEGLGFDYVVFRVPFVFFPY-------KEIVKSLNLRLVN 118 (291)
T ss_dssp EETTTTSCCTTCCHHH-HHHHHHHTTCSEEEEEESSCCCSC-------HHHHHTCSSEEEE
T ss_pred ECCccCcccCCCcHHH-HHHHHHHhcCCEEEEEcCChHHHH-------HHHHHhCCCCEEe
Confidence 2 1234553333 334445666899999988777776 6 77889999754
No 199
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=23.78 E-value=2.8e+02 Score=22.09 Aligned_cols=50 Identities=18% Similarity=0.092 Sum_probs=34.3
Q ss_pred HHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 87 EGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
..++| .+.|++.++|-+++...-...... +-.--..|...++.||++-.-
T Consensus 96 t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 149 (304)
T 3l21_A 96 TAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDI 149 (304)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 55554 477888999999998754332222 333445788889999998764
No 200
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=23.62 E-value=1.2e+02 Score=25.14 Aligned_cols=79 Identities=14% Similarity=0.153 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhccC-CCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHH-hhhCCCcEEEEEeeCCCHHHHH
Q 028280 14 DAARAALLWALQNLLRF-GDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDIC-NDFFNTNVEIIVTEGDQEGARI 91 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~-~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~v~~G~~~~~~I 91 (211)
..+++.+.+|.++|.+. ..+|+++|=...... .+ .. ..+.+.+.. +++++++++...++. .+-.+
T Consensus 157 ~~~eRiar~AF~~A~~r~rkkVt~v~KaNvlk~--sd--gl-------f~~~~~eva~~eyp~i~~~~~~vD~--~~~ql 223 (349)
T 3blx_A 157 PKTERIARFAFDFAKKYNRKSVTAVHKANIMKL--GD--GL-------FRNIITEIGQKEYPDIDVSSIIVDN--ASMQA 223 (349)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECTTTSTT--HH--HH-------HHHHHHHHHHHHCTTSEEEEEEHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEeCCccchh--hH--HH-------HHHHHHHHHHhhCCCeeEEEeeHHH--HHHHH
Confidence 45788888999999887 456887775432111 11 11 122344455 468888888765433 34444
Q ss_pred HHHHHHhCCCEEEEec
Q 028280 92 AALVREIGASALVVGL 107 (211)
Q Consensus 92 ~~~a~~~~adLIVmG~ 107 (211)
+.- -.+.|.||+..
T Consensus 224 v~~--P~~FDVivt~N 237 (349)
T 3blx_A 224 VAK--PHQFDVLVTPS 237 (349)
T ss_dssp HHC--GGGCSEEEECH
T ss_pred hhC--cccccEEEECC
Confidence 432 34678777653
No 201
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=23.59 E-value=1.6e+02 Score=20.43 Aligned_cols=39 Identities=23% Similarity=0.081 Sum_probs=27.5
Q ss_pred CCCeEEEEecCCH----HHHHHHHHHHHhhccCCCEEEEEEEec
Q 028280 2 DVKKIVVIVEDVD----AARAALLWALQNLLRFGDVVTLLHVFP 41 (211)
Q Consensus 2 ~~k~ILv~vD~s~----~s~~al~~A~~la~~~~a~l~llhV~~ 41 (211)
.||++++.+..++ .+..++..|...+.. +..+.++-..+
T Consensus 4 ~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~-~~~v~Vff~~D 46 (136)
T 2hy5_B 4 VVKKFMYLNRKAPYGTIYAWEALEVVLIGAAF-DQDVCVLFLDD 46 (136)
T ss_dssp -CCEEEEEECSCTTTSSHHHHHHHHHHHHGGG-CCEEEEEECGG
T ss_pred chhEEEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCCEEEEEEhH
Confidence 4778999987665 467888888877764 56776665544
No 202
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=23.43 E-value=1.5e+02 Score=19.27 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=26.0
Q ss_pred CCeEEEEecC----CHHHHHHHHHHHHhhccCCC-EEEEEEEec
Q 028280 3 VKKIVVIVED----VDAARAALLWALQNLLRFGD-VVTLLHVFP 41 (211)
Q Consensus 3 ~k~ILv~vD~----s~~s~~al~~A~~la~~~~a-~l~llhV~~ 41 (211)
|+++++.+.. ++....++..|..++...|. ++.++-..+
T Consensus 1 M~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~d 44 (117)
T 1jx7_A 1 MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSD 44 (117)
T ss_dssp CCEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEch
Confidence 3456666554 35578889888888875466 776666654
No 203
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=23.12 E-value=55 Score=24.56 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhccC--CCEEEEEEEecC
Q 028280 16 ARAALLWALQNLLRF--GDVVTLLHVFPS 42 (211)
Q Consensus 16 s~~al~~A~~la~~~--~a~l~llhV~~~ 42 (211)
+...+++.++.+... |.++.++.....
T Consensus 22 s~~l~~~~~~~~~~~~~g~ev~~~dL~~~ 50 (211)
T 3p0r_A 22 SVKLYEAFLASYKEAHPNDTVVELDLYKE 50 (211)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEGGGS
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 677778878777654 789999998764
No 204
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=22.94 E-value=54 Score=25.89 Aligned_cols=29 Identities=7% Similarity=0.240 Sum_probs=0.0
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLH 38 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llh 38 (211)
.++|++++|.++ ..++.|...|+.+.+.|
T Consensus 38 V~~I~~alD~t~-------~vi~eAi~~gadlIitH 66 (267)
T 2fyw_A 38 IQRVMVALDIRE-------ETVAEAIEKGVDLIIVK 66 (267)
T ss_dssp CSEEEEESCCCH-------HHHHHHHHTTCSEEEES
T ss_pred cCEEEEEEcCCH-------HHHHHHHHCCCCEEEEC
No 205
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=22.77 E-value=99 Score=22.41 Aligned_cols=40 Identities=13% Similarity=-0.017 Sum_probs=28.1
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
|.+||+......+++..++..++-+...|.++.++++.+.
T Consensus 4 mmkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 4 KPNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred CcEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 4567666544445777788877777777888888887654
No 206
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=22.52 E-value=59 Score=26.05 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=24.4
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHV 39 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV 39 (211)
..++||+++|..+ ..+..|.+.++.+++-|=
T Consensus 37 eV~kIlvaLD~t~-------~vv~eA~~~g~dlIItHH 67 (278)
T 3rxy_A 37 DLKRVMMGIDIGP-------AELLLARQLGCDGVIAHH 67 (278)
T ss_dssp CBSEEEEESSCCH-------HHHHHHHHTTCSEEEESS
T ss_pred cccEEEEEECCCH-------HHHHHHHHcCCCEEEECC
Confidence 3689999999998 466677778888877763
No 207
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=22.27 E-value=3.2e+02 Score=22.24 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=27.6
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHh---hccCCCEEEEEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQN---LLRFGDVVTLLH 38 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~l---a~~~~a~l~llh 38 (211)
.++|+++.|++.....|...+... ....|..+.++.
T Consensus 206 ~~~Vil~~D~D~AG~~Aa~r~~~~~~~l~~~g~~v~v~~ 244 (338)
T 1dd9_A 206 TNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMF 244 (338)
T ss_dssp CSEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEEE
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 368999999999999999988887 334466665543
No 208
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=22.27 E-value=2.9e+02 Score=21.85 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=40.8
Q ss_pred CCcEEEEEeeCCCHHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCC
Q 028280 74 NTNVEIIVTEGDQEGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
.+.+-.-+...+ ..++| .+.|++.++|-+++...-...... +-.--+.|...++.||++-.-+
T Consensus 73 rvpviaGvg~~~-t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P 139 (300)
T 3eb2_A 73 RVPVVAGVASTS-VADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNP 139 (300)
T ss_dssp SSCBEEEEEESS-HHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECT
T ss_pred CCcEEEeCCCCC-HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECc
Confidence 455555444444 66554 477888999999998765432222 3334457778889999997654
No 209
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=22.19 E-value=1.5e+02 Score=18.77 Aligned_cols=47 Identities=9% Similarity=0.082 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCccccccc-HHHHHHcc---CCceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAM-SHNDISSS---FNCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs-~a~~vl~~---a~~PVLvV~~~ 137 (211)
..+ .....++..+|+|++...-.+.- |- +...+-.. ..+|++++-..
T Consensus 34 ~~~-a~~~~~~~~~dlvi~D~~l~~~~---g~~~~~~l~~~~~~~~~~ii~~s~~ 84 (124)
T 1mb3_A 34 GLS-ALSIARENKPDLILMDIQLPEIS---GLEVTKWLKEDDDLAHIPVVAVTAF 84 (124)
T ss_dssp HHH-HHHHHHHHCCSEEEEESBCSSSB---HHHHHHHHHHSTTTTTSCEEEEC--
T ss_pred HHH-HHHHHhcCCCCEEEEeCCCCCCC---HHHHHHHHHcCccccCCcEEEEECC
Confidence 444 44556677899999997654311 11 33344332 46899998653
No 210
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=22.16 E-value=77 Score=24.11 Aligned_cols=116 Identities=10% Similarity=-0.018 Sum_probs=58.1
Q ss_pred CCeEEEEecCCHHHHH-HHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE
Q 028280 3 VKKIVVIVEDVDAARA-ALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~-al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v 81 (211)
-|+|++++-||-.... +++..-.|.+ .|.++.++-.-....... .. ....+....++.+.. .++
T Consensus 5 ~k~IllgiTGsiaayk~~~~ll~~L~~-~g~eV~vv~T~~A~~vl~-----~f-~~~~~~~~~l~~ltg----~~v---- 69 (207)
T 3mcu_A 5 GKRIGFGFTGSHCTYEEVMPHLEKLIA-EGAEVRPVVSYTVQSTNT-----RF-GEGAEWIKKIEEITG----FKA---- 69 (207)
T ss_dssp TCEEEEEECSCGGGGTTSHHHHHHHHH-TTCEEEEEECC------------------CHHHHHHHHHSS----SCC----
T ss_pred CCEEEEEEEChHHHHHHHHHHHHHHHh-CCCEEEEEEehHHHHHHH-----Hh-cCchhHHHHHHHHhC----Cce----
Confidence 3699999999976665 6666555544 578876654322110000 00 000011122333332 211
Q ss_pred eeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cc--c-HHHH---HHccCCceEEEEcC
Q 028280 82 TEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LA--M-SHND---ISSSFNCRVLAIKQ 136 (211)
Q Consensus 82 ~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~g--s-~a~~---vl~~a~~PVLvV~~ 136 (211)
..+ ..+ .....-...+|++|+..-.-+.+.+ .| . .... +.-...+||++++.
T Consensus 70 -~~~-~~~-~~hi~ls~~aD~mvIaPaTanTlAKiA~GiaDnLlt~aa~~~L~~~~plvlaPa 129 (207)
T 3mcu_A 70 -INS-IVG-AEPLGPKIPLDCMVIAPLTGNSMSKFANAMTDSPVLMAAKATLRNGKPVVLAVS 129 (207)
T ss_dssp -BCS-HHH-HGGGTTTSCCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHHHHTTCCEEEEEE
T ss_pred -Eee-cCc-ccccccchhcCEEEEecCCHHHHHHHHccccCcHHHHHHHHHHhcCCCEEEEEC
Confidence 112 332 1111113568999998877666655 22 2 2222 44567899999975
No 211
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=22.10 E-value=1.8e+02 Score=19.23 Aligned_cols=48 Identities=6% Similarity=0.041 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHc---cCCceEEEEcCC
Q 028280 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISS---SFNCRVLAIKQP 137 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~---~a~~PVLvV~~~ 137 (211)
.++..+.+++..+|+||++..-.+.-. -.+...+-. ...+||+++-..
T Consensus 41 ~~~a~~~l~~~~~dlii~d~~l~~~~g--~~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 41 AIEAVPVAVKTHPHLIITEANMPKISG--MDLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCSSSCH--HHHHHHHHTSTTTTTSCEEEEESS
T ss_pred HHHHHHHHHcCCCCEEEEcCCCCCCCH--HHHHHHHHcCcccCCCCEEEEeCC
Confidence 344456666778999999976443110 113444443 356999998653
No 212
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=22.06 E-value=1.4e+02 Score=19.63 Aligned_cols=46 Identities=4% Similarity=-0.044 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+..+.+++..+|+|++...-.+.-. + .+...+-....+||+++-.
T Consensus 38 ~~al~~~~~~~~dlvllD~~l~~~~g-~-~l~~~l~~~~~~~ii~ls~ 83 (136)
T 2qzj_A 38 EEAIGKIFSNKYDLIFLEIILSDGDG-W-TLCKKIRNVTTCPIVYMTY 83 (136)
T ss_dssp HHHHHHHHHCCCSEEEEESEETTEEH-H-HHHHHHHTTCCCCEEEEES
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCH-H-HHHHHHccCCCCCEEEEEc
Confidence 34445666778999999876432110 1 1334444344789988854
No 213
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=22.03 E-value=2.4e+02 Score=25.40 Aligned_cols=34 Identities=12% Similarity=0.163 Sum_probs=19.7
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEE
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHV 39 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV 39 (211)
|||++|||+= ..+.+...+ .-+++.|-++.+++.
T Consensus 26 ~m~~kILI~g-~Geia~~ii----raar~lGi~~vav~s 59 (675)
T 3u9t_A 26 RSIQRLLVAN-RGEIACRVM----RSARALGIGSVAVHS 59 (675)
T ss_dssp CCCSEEEECC-CHHHHHHHH----HHHHHHTCEEEEEEC
T ss_pred cCCCEEEEEC-CCHHHHHHH----HHHHHCCCEEEEEEC
Confidence 6899999864 333333333 334445777666653
No 214
>3l52_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, PSI-2, protein structure initiative; 1.35A {Streptomyces avermitilis} PDB: 3v75_A*
Probab=21.78 E-value=3.1e+02 Score=21.87 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=51.1
Q ss_pred eEEEEecCCHH----------HHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 028280 5 KIVVIVEDVDA----------ARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFN 74 (211)
Q Consensus 5 ~ILv~vD~s~~----------s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 74 (211)
.+.|++|.... .....+++..++...+..+..+-+.-. .........-..++++.+.+.+. |
T Consensus 24 ~LcvglDp~~~~lp~~~l~~~~~~~~~~~~~ivd~l~~~v~~~Kvg~~-------lf~~~G~~G~~~l~~~i~~l~~~-g 95 (284)
T 3l52_A 24 PLCVGIDPHASLLADWGLSDDVAGLERFSRTVVEALGEHVAVFKPQSA-------FFERFGSRGVAVLEKTVAEARAA-G 95 (284)
T ss_dssp SCEEEECCCHHHHHHTTCCSSHHHHHHHHHHHHHHHTTTCSEEEEBHH-------HHHTTHHHHHHHHHHHHHHHHHT-T
T ss_pred CeEEEECCChhhccccccccchHHHHHHHHHHHHHhCCcceEEEeeHH-------HHHhcCHHHHHHHHHHHHHHHHC-C
Confidence 35677887765 345568888888888776666555421 00000011111222232233322 5
Q ss_pred CcEEEEEeeCCCHHHHHHHHHHH-------hCCCEEEE
Q 028280 75 TNVEIIVTEGDQEGARIAALVRE-------IGASALVV 105 (211)
Q Consensus 75 i~~~~~v~~G~~~~~~I~~~a~~-------~~adLIVm 105 (211)
..+=.....+| +...+..+++. +++|+|.+
T Consensus 96 ~~VflDlK~~D-IpnTv~~ya~~~~~~~~~lg~D~vTv 132 (284)
T 3l52_A 96 ALVVMDAKRGD-IGSTMAAYAEAFLRKDSPLFSDALTV 132 (284)
T ss_dssp CEEEEEEEECC-CHHHHHHHHHHHSSTTSTTCCSEEEE
T ss_pred CcEEEEecccC-cHHHHHHHHHHHhccccccCCcEEEE
Confidence 55655667777 77777776654 45788777
No 215
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=21.78 E-value=4.3e+02 Score=24.94 Aligned_cols=83 Identities=11% Similarity=-0.098 Sum_probs=42.6
Q ss_pred HHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCC
Q 028280 22 WALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGAS 101 (211)
Q Consensus 22 ~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~ad 101 (211)
.++..+...|+...-+|+..+........-..+......+.+.++.+.+. -++.+-.++..+..-...+++.+.+.++|
T Consensus 652 ~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~-~~~Pv~vK~~~~~~~~~~~a~~~~~~G~d 730 (1025)
T 1gte_A 652 ELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQA-VQIPFFAKLTPNVTDIVSIARAAKEGGAD 730 (1025)
T ss_dssp HHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHH-CSSCEEEEECSCSSCHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHh-hCCceEEEeCCChHHHHHHHHHHHHcCCC
Confidence 34555555788888888875433110000000000011111222222222 25667776655442356788888999999
Q ss_pred EEEE
Q 028280 102 ALVV 105 (211)
Q Consensus 102 LIVm 105 (211)
.|++
T Consensus 731 ~i~v 734 (1025)
T 1gte_A 731 GVTA 734 (1025)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9999
No 216
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=21.74 E-value=2.1e+02 Score=20.45 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=21.6
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH----hCCCEEEEe
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVRE----IGASALVVG 106 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~----~~adLIVmG 106 (211)
+.+++.+. |.++......+|| .+.|.+..++ .++|+||..
T Consensus 36 l~~~L~~~-G~~v~~~~iv~Dd-~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 36 LHELLKEA-GHKVTSYEIVKDD-KESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp HHHHHHHH-TCEEEEEEEECSS-HHHHHHHHHHHHTCTTCSEEEEE
T ss_pred HHHHHHHC-CCeEeEEEEeCCC-HHHHHHHHHHHHhcCCCCEEEEc
Confidence 33344433 6666665555553 3444444333 278988774
No 217
>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}
Probab=21.73 E-value=2.9e+02 Score=21.60 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=42.2
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEE-EEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVV-TLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l-~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
+++.|+.|... ++.|+.++...+..+ ..+-+.. +.....+.+..+.+++. |..+=....
T Consensus 5 ~~LivALD~~~-----~~~al~l~~~l~~~v~~~~KvG~----------~l~~~~G~~~v~~Lk~~-----g~~VflDlK 64 (259)
T 3tfx_A 5 RPVIVALDLDN-----EEQLNKILSKLGDPHDVFVKVGM----------ELFYNAGIDVIKKLTQQ-----GYKIFLDLK 64 (259)
T ss_dssp CCEEEECCCSC-----HHHHHHHHHTTCCGGGCEEEECH----------HHHHHHCHHHHHHHHHT-----TCEEEEEEE
T ss_pred CCeEEEeCCCC-----HHHHHHHHHHhCcccceEEEeCH----------HHHHhcCHHHHHHHHHC-----CCcEEEEec
Confidence 57899999865 234566666666555 4444432 11112222222223221 444444455
Q ss_pred eCCCHHHHH---HHHHHHhCCCEEEEec
Q 028280 83 EGDQEGARI---AALVREIGASALVVGL 107 (211)
Q Consensus 83 ~G~~~~~~I---~~~a~~~~adLIVmG~ 107 (211)
.+| +...+ .+.+.+.++|++.+-.
T Consensus 65 ~~D-IpnTv~~a~~~~~~~gad~vTVh~ 91 (259)
T 3tfx_A 65 MHD-IPNTVYNGAKALAKLGITFTTVHA 91 (259)
T ss_dssp ECS-CHHHHHHHHHHHHTTTCSEEEEEG
T ss_pred ccc-cchHHHHHHHHHHhcCCCEEEEcC
Confidence 566 55433 3455566788877633
No 218
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=21.59 E-value=1.8e+02 Score=18.99 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHc---cCCceEEEEcCC
Q 028280 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISS---SFNCRVLAIKQP 137 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~---~a~~PVLvV~~~ 137 (211)
.++..+.+++..+|+|+++..-.+.-. + .+...+-. ...+||+++-..
T Consensus 43 ~~~a~~~l~~~~~dlii~d~~l~~~~g-~-~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 43 PFDAGDLLHTVKPDVVMLDLMMVGMDG-F-SICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp HHHHHHHHHHTCCSEEEEETTCTTSCH-H-HHHHHHHTSTTTTTSEEEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEecccCCCcH-H-HHHHHHHhCccccCCcEEEEeCC
Confidence 344555667778999999986543110 1 13344443 356899998653
No 219
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=21.55 E-value=41 Score=16.30 Aligned_cols=10 Identities=40% Similarity=0.587 Sum_probs=4.4
Q ss_pred ccccCCcccc
Q 028280 199 SRRKGSSRRE 208 (211)
Q Consensus 199 ~~~~~~~~~~ 208 (211)
.||+.|.+.-
T Consensus 4 ~rrs~~r~kg 13 (26)
T 1m06_J 4 ARRSPSRRKG 13 (26)
T ss_dssp GGSCCCCCSS
T ss_pred cccCCCcCCc
Confidence 4444444433
No 220
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=21.48 E-value=1.1e+02 Score=27.27 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHc-cCCceEEEEcC
Q 028280 86 QEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISS-SFNCRVLAIKQ 136 (211)
Q Consensus 86 ~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~-~a~~PVLvV~~ 136 (211)
-+.+.|++.+++.++|+|.+..........+..+.+.+-+ ...|||+|--.
T Consensus 136 vP~e~iv~aa~~~~~diVgLS~l~t~~~~~m~~~i~~Lr~~g~~i~ViVGGa 187 (579)
T 3bul_A 136 VPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGFTIPLLIGGA 187 (579)
T ss_dssp BCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHTTCCSCEEEEST
T ss_pred CCHHHHHHHHHHcCCCEEEEEecCCCCHHHHHHHHHHHHHcCCCCeEEEEcc
Confidence 3899999999999999999988654333223334443322 23588887654
No 221
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=21.16 E-value=1.4e+02 Score=27.45 Aligned_cols=49 Identities=10% Similarity=-0.032 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCC---ceEEE
Q 028280 84 GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFN---CRVLA 133 (211)
Q Consensus 84 G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~---~PVLv 133 (211)
.+.+.+.+++.+.++++|+|+|.+........+..+.+. ++... ++|++
T Consensus 632 ~~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~-L~~~G~~~i~Viv 683 (727)
T 1req_A 632 LFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKE-LDKLGRPDILITV 683 (727)
T ss_dssp TTBCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHH-HHHTTCTTSEEEE
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeeecHhHHHHHHHHHHH-HHhcCCCCCEEEE
Confidence 333679999999999999999988654433323334433 34443 45554
No 222
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=21.01 E-value=2e+02 Score=20.47 Aligned_cols=46 Identities=7% Similarity=0.021 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+..+.+++..+|+|++...-.+.-. -.+...+-...++||+++-.
T Consensus 48 ~~al~~~~~~~~dlvi~D~~~p~~~g--~~~~~~l~~~~~~pii~lt~ 93 (205)
T 1s8n_A 48 QEAVELAELHKPDLVIMDVKMPRRDG--IDAASEIASKRIAPIVVLTA 93 (205)
T ss_dssp HHHHHHHHHHCCSEEEEESSCSSSCH--HHHHHHHHHTTCSCEEEEEE
T ss_pred HHHHHHHhhcCCCEEEEeCCCCCCCh--HHHHHHHHhcCCCCEEEEec
Confidence 34445566778999999976543111 01344554555679988854
No 223
>1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12
Probab=20.94 E-value=3.3e+02 Score=22.82 Aligned_cols=39 Identities=8% Similarity=-0.001 Sum_probs=24.2
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEE
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHV 39 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV 39 (211)
|||+.+-+.+-.+.........-+..|...|.+-++-..
T Consensus 24 ~~M~~LGiSvYp~~~~~~~~~~Yi~~a~~~Gf~~IFTSL 62 (385)
T 1x7f_A 24 AMERKLGISLYPEHSTKEKDMAYISAAARHGFSRIFTCL 62 (385)
T ss_dssp -CCCEEEEEECGGGSCHHHHHHHHHHHHTTTEEEEEEEE
T ss_pred HHHHheEEEEcCCCCCHHHHHHHHHHHHHCCCCEEEccC
Confidence 678878888766654444444557778878865444444
No 224
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=20.71 E-value=2e+02 Score=19.34 Aligned_cols=47 Identities=4% Similarity=-0.021 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCcccccc-cHHHHHHcc---CCceEEEEcCC
Q 028280 88 GARIAALVREIGASALVVGLHDRSFLHKLA-MSHNDISSS---FNCRVLAIKQP 137 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~~~~~~g-s~a~~vl~~---a~~PVLvV~~~ 137 (211)
.++..+.+++..+|+|++...-.+.- | .+...+-.. ..+||+++-..
T Consensus 40 ~~~al~~l~~~~~dlii~D~~l~~~~---g~~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 40 GREAVRFLSLTRPDLIISDVLMPEMD---GYALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp HHHHHHHHTTCCCSEEEEESCCSSSC---HHHHHHHHHHSTTTTTSCEEEEECC
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCC---HHHHHHHHHhCCCcCCCCEEEEECC
Confidence 34445566778899999998644311 1 133333333 46899998653
No 225
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=20.69 E-value=1.8e+02 Score=18.64 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHc---cCCceEEEEcCCCC
Q 028280 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISS---SFNCRVLAIKQPAA 139 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~---~a~~PVLvV~~~~~ 139 (211)
.++..+.+++..+|+|++...-.+.-. -.+...+-. ...+||+++-....
T Consensus 36 ~~~a~~~l~~~~~dlii~D~~l~~~~g--~~~~~~l~~~~~~~~~~ii~~s~~~~ 88 (127)
T 3i42_A 36 GTDALHAMSTRGYDAVFIDLNLPDTSG--LALVKQLRALPMEKTSKFVAVSGFAK 88 (127)
T ss_dssp HHHHHHHHHHSCCSEEEEESBCSSSBH--HHHHHHHHHSCCSSCCEEEEEECC-C
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCH--HHHHHHHHhhhccCCCCEEEEECCcc
Confidence 345555667788999999986543111 013334433 35689999875433
No 226
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=20.53 E-value=3.2e+02 Score=21.54 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=36.8
Q ss_pred CCcEEEEEeeCCCHHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+.+-.-+...+ ..++| .+.|++.++|-+++...-...... +-.--..|...++.||++-.-
T Consensus 71 rvpviaGvg~~~-t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 136 (292)
T 3daq_A 71 RVPVIAGTGTND-TEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNV 136 (292)
T ss_dssp SSCEEEECCCSC-HHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEEC
T ss_pred CCcEEEeCCccc-HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEec
Confidence 444444333233 65554 467888999999888754332222 333334566667899998754
No 227
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=20.51 E-value=3.3e+02 Score=21.76 Aligned_cols=50 Identities=8% Similarity=0.018 Sum_probs=33.5
Q ss_pred HHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 87 EGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 87 ~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
..++| .+.|++.++|-+++...-...... +-.--..|...++.||++-.-
T Consensus 104 t~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 157 (314)
T 3qze_A 104 TREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNV 157 (314)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 55554 477888999999998754332222 333445677778999998764
No 228
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=20.33 E-value=2.8e+02 Score=20.92 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=39.0
Q ss_pred HHHHHHHhhhCCCcEEEEEeeC--CCHHH--HHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEc
Q 028280 63 LSFKDICNDFFNTNVEIIVTEG--DQEGA--RIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 63 ~~l~~~~~~~~~i~~~~~v~~G--~~~~~--~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~ 135 (211)
+.+++.+++. |..+......+ + +.. ..++.+...++|-||+.......+. ... .-+. .++||+++-
T Consensus 25 ~g~~~~a~~~-g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vdgiii~~~~~~~~~---~~~-~~~~-~~iPvV~~~ 94 (304)
T 3o1i_D 25 YGMVSEAEKQ-GVNLRVLEAGGYPN-KSRQEQQLALCTQWGANAIILGTVDPHAYE---HNL-KSWV-GNTPVFATV 94 (304)
T ss_dssp HHHHHHHHHH-TCEEEEEECSSTTC-HHHHHHHHHHHHHHTCSEEEECCSSTTSST---TTH-HHHT-TTSCEEECS
T ss_pred HHHHHHHHHc-CCeEEEEcCCCCCC-HHHHHHHHHHHHHcCCCEEEEeCCChhHHH---HHH-HHHc-CCCCEEEec
Confidence 3344555544 66666554444 3 433 3556666779999998865544222 122 2345 899999984
No 229
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=20.26 E-value=1.9e+02 Score=18.97 Aligned_cols=47 Identities=6% Similarity=0.097 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCccccccc-HHHHHHc---cCCceEEEEcCC
Q 028280 88 GARIAALVREIGASALVVGLHDRSFLHKLAM-SHNDISS---SFNCRVLAIKQP 137 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs-~a~~vl~---~a~~PVLvV~~~ 137 (211)
.++..+.+++..+|+|++...-.+. -|- +...+-. ...+||+++-..
T Consensus 40 ~~~a~~~l~~~~~dlii~D~~l~~~---~g~~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 40 GAKALYQVQQAKYDLIILDIGLPIA---NGFEVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp HHHHHHHHTTCCCSEEEECTTCGGG---CHHHHHHHHHSSSTTTTCCEEEEETT
T ss_pred HHHHHHHhhcCCCCEEEEeCCCCCC---CHHHHHHHHHhcccccCCCEEEEeCC
Confidence 3444556677889999999764321 121 3334433 346899998654
No 230
>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1
Probab=20.21 E-value=1.9e+02 Score=23.12 Aligned_cols=87 Identities=10% Similarity=0.003 Sum_probs=45.8
Q ss_pred HHHHHHHHhhccCCCEEEEEEEecCCCcc---chHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHH--HHHH
Q 028280 18 AALLWALQNLLRFGDVVTLLHVFPSLNSR---NRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEG--ARIA 92 (211)
Q Consensus 18 ~al~~A~~la~~~~a~l~llhV~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~--~~I~ 92 (211)
..+..|+..+... ...+-+|...+.... .... . +........+.++.+.+.. +..+.+++..|-+.. ..++
T Consensus 71 ~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~-~-l~~~~~~~~eiv~~v~~~~-~~pv~vKir~G~~~~~~~~~a 146 (318)
T 1vhn_A 71 NELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGG-A-LLKDLRHFRYIVRELRKSV-SGKFSVKTRLGWEKNEVEEIY 146 (318)
T ss_dssp HHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGG-G-GGSCHHHHHHHHHHHHHHC-SSEEEEEEESCSSSCCHHHHH
T ss_pred HHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCccc-c-hhhCHHHHHHHHHHHHHhh-CCCEEEEecCCCChHHHHHHH
Confidence 3455566777766 777777876553211 0000 0 0001112222233332222 466777776664221 2788
Q ss_pred HHHHHhCCCEEEEecC
Q 028280 93 ALVREIGASALVVGLH 108 (211)
Q Consensus 93 ~~a~~~~adLIVmG~~ 108 (211)
+.+++.++|.|++-.+
T Consensus 147 ~~l~~~G~d~i~v~g~ 162 (318)
T 1vhn_A 147 RILVEEGVDEVFIHTR 162 (318)
T ss_dssp HHHHHTTCCEEEEESS
T ss_pred HHHHHhCCCEEEEcCC
Confidence 8888999999998543
Done!