Query 028280
Match_columns 211
No_of_seqs 191 out of 1779
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 14:47:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028280.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028280hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mjha_ c.26.2.4 (A:) "Hypothe 100.0 4.5E-29 3.3E-33 187.8 18.2 135 1-137 1-158 (160)
2 d2z3va1 c.26.2.4 (A:2-136) Hyp 99.9 1.2E-26 8.7E-31 169.7 16.9 131 3-134 1-135 (135)
3 d1jmva_ c.26.2.4 (A:) Universa 99.9 5E-26 3.6E-30 167.1 11.7 134 2-137 1-139 (140)
4 d1tq8a_ c.26.2.4 (A:) Hypothet 99.9 2.2E-25 1.6E-29 164.8 14.2 134 2-136 4-146 (147)
5 d2gm3a1 c.26.2.4 (A:5-175) Put 99.9 1E-24 7.6E-29 165.8 15.4 137 3-141 1-164 (171)
6 d1q77a_ c.26.2.4 (A:) Hypothet 99.9 3.3E-24 2.4E-28 156.6 8.9 126 2-135 3-138 (138)
7 d1efpb_ c.26.2.3 (B:) Small, b 95.5 0.18 1.3E-05 38.3 13.1 100 12-132 35-144 (246)
8 d1wy5a1 c.26.2.5 (A:1-216) Til 95.5 0.11 7.9E-06 38.5 11.6 100 3-114 24-140 (216)
9 d3clsc1 c.26.2.3 (C:1-262) Sma 95.3 0.2 1.5E-05 38.4 12.8 100 12-132 35-143 (262)
10 d1efvb_ c.26.2.3 (B:) Small, b 91.7 1.5 0.00011 33.0 11.8 100 12-132 35-144 (252)
11 d1np7a2 c.28.1.1 (A:1-204) Cry 90.3 0.16 1.1E-05 37.1 4.6 126 3-137 5-138 (204)
12 d1owla2 c.28.1.1 (A:3-204) DNA 90.2 0.45 3.3E-05 34.5 7.2 98 30-136 25-127 (202)
13 d1ni5a1 c.26.2.5 (A:0-226) tRN 88.9 0.7 5.1E-05 34.0 7.5 98 2-111 12-120 (227)
14 d2j07a2 c.28.1.1 (A:2-171) DNA 87.4 0.8 5.8E-05 32.2 6.7 105 17-136 16-120 (170)
15 d1u11a_ c.23.8.1 (A:) N5-CAIR 86.8 2 0.00014 30.0 8.3 66 65-137 21-89 (159)
16 d1vbka1 c.26.2.6 (A:176-307) H 86.3 2 0.00014 29.0 7.9 83 5-107 6-88 (132)
17 d1xmpa_ c.23.8.1 (A:) N5-CAIR 86.1 2.7 0.0002 29.1 8.7 66 65-137 20-88 (155)
18 d1qcza_ c.23.8.1 (A:) N5-CAIR 84.1 4.9 0.00036 28.0 9.3 65 66-137 21-88 (163)
19 d2iela1 c.26.2.4 (A:2-135) Hyp 81.5 5.5 0.0004 26.4 13.2 126 5-134 2-132 (134)
20 d1o4va_ c.23.8.1 (A:) N5-CAIR 80.6 4.8 0.00035 28.2 8.2 66 65-137 19-87 (169)
21 d3clsd1 c.26.2.3 (D:1-192) Lar 79.9 7.8 0.00057 27.2 10.0 103 5-132 2-115 (192)
22 d1ccwa_ c.23.6.1 (A:) Glutamat 79.2 6.9 0.0005 26.1 8.6 50 86-135 41-92 (137)
23 d1u3da2 c.28.1.1 (A:13-197) Cr 77.0 5.6 0.00041 27.8 7.9 111 18-137 16-127 (185)
24 d7reqa2 c.23.6.1 (A:561-728) M 75.4 9.7 0.00071 26.4 8.6 56 78-133 67-124 (168)
25 d2qy9a2 c.37.1.10 (A:285-495) 72.7 9.8 0.00072 27.4 8.3 91 7-115 14-107 (211)
26 d1gsoa2 c.30.1.1 (A:-2-103) Gl 72.6 1.5 0.00011 28.4 3.2 22 87-108 54-75 (105)
27 d2pjua1 c.92.3.1 (A:11-196) Pr 71.3 14 0.001 26.0 8.7 65 61-137 12-79 (186)
28 d1iv0a_ c.55.3.8 (A:) Hypothet 70.6 8.2 0.0006 24.2 6.6 50 87-137 39-94 (98)
29 d1ls1a2 c.37.1.10 (A:89-295) G 70.6 15 0.0011 26.1 11.2 91 7-115 15-108 (207)
30 d2a9pa1 c.23.1.1 (A:2-118) DNA 70.2 10 0.00076 24.0 8.9 65 65-137 16-80 (117)
31 d1vmaa2 c.37.1.10 (A:82-294) G 69.4 17 0.0012 26.1 9.5 92 6-115 15-109 (213)
32 d1nu0a_ c.55.3.8 (A:) Hypothet 61.6 4.1 0.0003 27.4 3.9 52 87-138 41-98 (138)
33 d1dnpa2 c.28.1.1 (A:1-200) DNA 58.9 14 0.0011 25.8 6.8 75 31-108 27-104 (200)
34 d1okkd2 c.37.1.10 (D:97-303) G 58.8 27 0.002 24.8 9.6 91 7-115 11-104 (207)
35 d1xhfa1 c.23.1.1 (A:2-122) Aer 54.7 22 0.0016 22.5 8.3 48 87-137 35-82 (121)
36 d1s8na_ c.23.1.1 (A:) Probable 54.4 22 0.0016 24.3 7.2 47 88-136 37-83 (190)
37 d1w25a1 c.23.1.1 (A:2-140) Res 50.9 28 0.002 22.5 8.1 68 65-138 17-85 (139)
38 d2c5sa1 c.26.2.6 (A:174-391) T 49.7 35 0.0026 23.4 13.6 34 5-42 6-39 (218)
39 d1t5oa_ c.124.1.5 (A:) Putativ 48.8 36 0.0026 26.1 8.1 58 74-137 205-266 (340)
40 d1q6oa_ c.1.2.3 (A:) 3-keto-L- 48.4 36 0.0026 23.1 7.6 84 4-106 2-85 (213)
41 d2d13a1 c.26.2.1 (A:2-227) Hyp 47.0 45 0.0033 23.9 10.2 95 1-108 1-98 (226)
42 d1j20a1 c.26.2.1 (A:1-165) Arg 45.7 31 0.0023 21.8 6.5 37 5-44 2-38 (165)
43 d1dd9a_ e.13.1.1 (A:) DNA prim 45.6 27 0.002 26.4 6.8 35 3-37 187-224 (314)
44 d1xkya1 c.1.10.1 (A:1-292) Dih 45.1 51 0.0037 24.0 9.2 62 74-136 72-137 (292)
45 d1uf3a_ d.159.1.6 (A:) Hypothe 45.1 20 0.0015 24.5 5.7 50 88-138 21-73 (228)
46 d1xw8a_ c.6.2.5 (A:) Hypotheti 44.6 52 0.0038 24.0 8.0 116 8-133 28-157 (247)
47 d1u6ka1 c.127.1.1 (A:2-283) F4 44.4 18 0.0013 26.6 5.2 45 92-138 56-100 (282)
48 d1qzua_ c.34.1.1 (A:) 4'-phosp 43.9 9.2 0.00067 26.9 3.4 39 1-39 1-40 (181)
49 d1zh2a1 c.23.1.1 (A:2-120) Tra 43.7 34 0.0024 21.4 7.9 48 87-137 33-80 (119)
50 d1t9ka_ c.124.1.5 (A:) Probabl 42.2 60 0.0044 24.7 8.5 57 74-136 204-265 (340)
51 d1j8yf2 c.37.1.10 (F:87-297) G 41.2 54 0.0039 23.1 10.2 89 8-114 18-109 (211)
52 d2a0ua1 c.124.1.5 (A:10-383) I 40.2 75 0.0055 24.4 9.8 59 73-137 227-290 (374)
53 d1xrsb1 c.23.6.1 (B:102-261) D 39.7 43 0.0031 22.6 6.5 34 77-110 57-90 (160)
54 d2bona1 e.52.1.2 (A:5-299) Lip 39.3 43 0.0031 24.4 7.0 35 73-107 27-61 (295)
55 d1t6t1_ c.136.1.1 (1:) Hypothe 38.2 20 0.0014 22.7 4.1 32 3-34 58-89 (108)
56 d1sbpa_ c.94.1.1 (A:) Sulphate 37.9 52 0.0038 23.9 7.4 65 33-108 2-66 (309)
57 d1k92a1 c.26.2.1 (A:1-188) Arg 37.3 34 0.0025 22.2 5.7 36 4-43 11-46 (188)
58 d2pg3a1 c.26.2.1 (A:1-230) Que 37.3 25 0.0018 24.7 5.1 36 3-42 1-36 (230)
59 d1p5dx1 c.84.1.1 (X:9-154) Pho 37.2 19 0.0014 23.9 4.2 40 3-42 40-79 (146)
60 d2hy5b1 c.114.1.1 (B:205-336) 36.9 33 0.0024 22.2 5.3 39 3-42 1-43 (132)
61 d1gtea2 c.1.4.1 (A:533-844) Di 36.4 55 0.004 24.2 7.3 99 5-108 104-205 (312)
62 d1iiba_ c.44.2.1 (A:) Enzyme I 36.2 45 0.0032 20.7 6.2 60 64-136 20-79 (103)
63 d1zesa1 c.23.1.1 (A:3-123) Pho 34.9 48 0.0035 20.6 6.0 47 89-137 34-83 (121)
64 d1v6ta_ c.6.2.5 (A:) Hypotheti 34.7 73 0.0053 23.3 7.4 116 8-133 33-162 (254)
65 d1km4a_ c.1.2.3 (A:) Orotidine 34.2 68 0.005 22.2 7.9 33 3-40 2-34 (212)
66 d2d1pb1 c.114.1.1 (B:1-119) tR 34.0 31 0.0022 21.7 4.7 39 3-42 1-43 (119)
67 d1cr2a_ c.37.1.11 (A:) Gene 4 33.9 23 0.0017 25.5 4.6 30 10-39 43-72 (277)
68 d1vhxa_ c.55.3.8 (A:) Hypothet 33.7 15 0.0011 24.5 3.0 51 87-137 42-98 (140)
69 d1g2ua_ c.77.1.1 (A:) 3-isopro 33.2 39 0.0028 25.9 5.9 78 14-107 160-237 (345)
70 d2dbsa1 d.374.1.1 (A:7-86) Hyp 33.1 14 0.001 21.3 2.3 30 3-32 26-55 (80)
71 d1tqxa_ c.1.2.2 (A:) D-ribulos 32.5 31 0.0023 24.5 5.0 26 82-108 175-200 (221)
72 d2dfaa1 c.6.2.5 (A:1-250) Hypo 32.4 60 0.0044 23.7 6.6 116 8-133 33-162 (250)
73 d1coza_ c.26.1.2 (A:) CTP:glyc 32.2 22 0.0016 22.7 3.7 46 81-136 68-113 (126)
74 d1g5qa_ c.34.1.1 (A:) Epidermi 32.1 16 0.0012 25.3 3.1 109 2-136 1-115 (174)
75 d1rpxa_ c.1.2.2 (A:) D-ribulos 30.7 24 0.0018 25.5 4.0 41 65-108 169-209 (230)
76 d2pjua1 c.92.3.1 (A:11-196) Pr 30.5 78 0.0057 21.8 7.3 85 20-135 83-167 (186)
77 d1sbza_ c.34.1.1 (A:) Probable 30.4 32 0.0023 23.8 4.5 33 5-37 2-34 (186)
78 d2a6na1 c.1.10.1 (A:1-292) Dih 30.4 74 0.0054 23.1 7.1 62 74-136 70-135 (292)
79 d1zuna1 c.26.2.2 (A:1-211) Sul 30.3 47 0.0034 21.9 5.6 41 3-43 26-66 (211)
80 d1h1ya_ c.1.2.2 (A:) D-ribulos 29.3 22 0.0016 25.5 3.5 26 82-108 173-198 (220)
81 d2vgba3 c.49.1.1 (A:440-573) P 29.2 67 0.0049 20.6 6.0 44 87-137 16-60 (134)
82 d1nmpa_ c.135.1.1 (A:) Hypothe 29.1 25 0.0018 25.5 3.9 30 3-39 35-64 (247)
83 d1pkla3 c.49.1.1 (A:358-498) P 28.7 52 0.0038 21.4 5.3 44 87-137 23-67 (141)
84 d2at2a1 c.78.1.1 (A:1-144) Asp 28.7 72 0.0053 20.8 7.8 27 3-29 1-28 (144)
85 d1o5ka_ c.1.10.1 (A:) Dihydrod 28.6 98 0.0071 22.3 9.3 63 74-137 70-136 (295)
86 d3bula2 c.23.6.1 (A:741-896) M 28.4 36 0.0026 22.9 4.4 57 77-134 35-93 (156)
87 d3bzka5 c.55.3.13 (A:325-473) 28.4 32 0.0023 23.1 4.0 47 88-136 48-97 (149)
88 g1w2w.1 c.124.1.5 (A:,B:) Puta 28.4 1.2E+02 0.009 23.4 8.4 59 74-136 241-304 (402)
89 d1mb3a_ c.23.1.1 (A:) Cell div 28.3 63 0.0046 20.0 7.9 63 65-136 17-83 (123)
90 d1p3y1_ c.34.1.1 (1:) MrsD {Ba 27.8 27 0.002 24.3 3.7 107 4-136 7-121 (183)
91 d2ajta1 b.43.2.2 (A:329-498) L 27.5 68 0.0049 21.9 5.7 43 64-109 110-152 (170)
92 d1cnza_ c.77.1.1 (A:) 3-isopro 27.5 55 0.004 25.1 5.9 78 14-107 170-247 (363)
93 d1e0ta3 c.49.1.1 (A:354-470) P 26.5 70 0.0051 20.0 5.7 44 87-137 5-49 (117)
94 d1vl2a1 c.26.2.1 (A:2-169) Arg 26.1 72 0.0052 19.9 7.7 37 4-44 2-38 (168)
95 d2flia1 c.1.2.2 (A:3-219) D-ri 26.1 32 0.0023 24.5 4.0 40 65-107 158-197 (217)
96 d1vlca_ c.77.1.1 (A:) 3-isopro 26.0 61 0.0044 24.9 5.9 77 14-106 170-246 (362)
97 d2g50a3 c.49.1.1 (A:396-530) P 25.7 64 0.0047 20.8 5.3 44 87-137 16-60 (135)
98 d1vb5a_ c.124.1.5 (A:) Putativ 25.6 1.2E+02 0.0085 22.2 9.9 39 99-137 176-219 (274)
99 d1xxxa1 c.1.10.1 (A:5-300) Dih 25.6 1.1E+02 0.0082 22.0 9.2 48 89-136 92-141 (296)
100 d1ii7a_ d.159.1.4 (A:) Mre11 { 25.2 61 0.0045 23.2 5.7 19 88-106 29-47 (333)
101 d2fvka2 c.1.9.6 (A:57-440) Dih 24.4 50 0.0037 25.5 5.2 27 16-42 177-203 (384)
102 d2r7ka1 c.30.1.8 (A:1-123) 5-f 24.2 86 0.0063 20.2 6.2 51 64-115 6-56 (123)
103 d1ycga1 c.23.5.1 (A:251-399) N 24.2 83 0.0061 20.0 6.0 59 74-135 31-93 (149)
104 d2c4va1 c.23.13.1 (A:1-158) Ty 24.1 86 0.0062 21.1 5.7 72 60-136 29-103 (158)
105 d1ea0a2 c.1.4.1 (A:423-1193) A 23.5 1.3E+02 0.0093 25.7 7.9 47 63-110 560-606 (771)
106 d1yl7a1 c.2.1.3 (A:2-105,A:215 23.4 85 0.0062 20.3 5.5 60 74-136 44-103 (135)
107 d1trba2 c.3.1.5 (A:119-244) Th 23.2 27 0.002 22.3 2.8 26 16-42 36-61 (126)
108 d2q4qa1 c.103.1.1 (A:2-122) Hy 22.2 92 0.0067 19.8 5.5 44 90-135 52-95 (121)
109 d1s3la_ d.159.1.7 (A:) Putativ 22.1 81 0.0059 20.5 5.4 49 78-139 92-140 (165)
110 d1vdca2 c.3.1.5 (A:118-243) Th 21.9 30 0.0022 22.4 2.8 27 16-43 43-69 (130)
111 d1dbqa_ c.93.1.1 (A:) Purine r 21.9 1.2E+02 0.0086 20.9 9.0 67 63-136 20-88 (282)
112 d2qv7a1 e.52.1.2 (A:1-312) Dia 21.7 1.4E+02 0.0099 21.6 7.9 60 74-137 33-93 (312)
113 d8abpa_ c.93.1.1 (A:) L-arabin 21.5 1.3E+02 0.0093 21.2 7.8 67 63-136 21-89 (305)
114 d1uz5a3 c.57.1.2 (A:181-328) M 21.4 82 0.0059 20.5 5.2 41 65-107 32-74 (148)
115 d2ftsa3 c.57.1.2 (A:499-653) G 21.2 82 0.0059 20.6 5.2 40 65-106 32-73 (155)
116 d1jq5a_ e.22.1.2 (A:) Glycerol 20.6 1.2E+02 0.0084 22.8 6.6 65 65-136 49-117 (366)
117 d2fywa1 c.135.1.1 (A:1-265) Hy 20.4 31 0.0022 25.4 2.9 29 3-38 36-64 (265)
118 d1a3xa3 c.49.1.1 (A:367-500) P 20.3 58 0.0042 20.9 4.1 44 87-137 16-60 (134)
No 1
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.96 E-value=4.5e-29 Score=187.85 Aligned_cols=135 Identities=20% Similarity=0.199 Sum_probs=109.9
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccc-----------------hHHH----HHHHHHHH
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRN-----------------RKKL----RLLRLKGY 59 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-----------------~~~~----~~~~~~~~ 59 (211)
||||+||||+|+|+.++++++||+.+|+..+++|+++||.++..... .... ....+..+
T Consensus 1 ~m~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1mjha_ 1 VMYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAK 80 (160)
T ss_dssp CCCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHH
T ss_pred CCcCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999987633210 0000 11112222
Q ss_pred HHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCC
Q 028280 60 QLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 60 ~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+.++.+.+.+.. .|+++++.+..|+ +.+.|++++++.++||||||+++++++.+ +||++++|+++++|||||||++
T Consensus 81 ~~l~~~~~~~~~-~gv~~~~~~~~G~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~GS~a~~vl~~s~~pVlvV~~~ 158 (160)
T d1mjha_ 81 NKMENIKKELED-VGFKVKDIIVVGI-PHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVKRK 158 (160)
T ss_dssp HHHHHHHHHHHH-TTCEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCSCEEEECCC
T ss_pred HHHHHHHHHHHh-cCCeEEEEEEecc-HHHHHhhhhhccccceEEeccCCCCcccccccCcHHHHHHhcCCCCEEEEcCC
Confidence 333334444443 5899999999999 99999999999999999999999999988 8999999999999999999975
No 2
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}
Probab=99.95 E-value=1.2e-26 Score=169.68 Aligned_cols=131 Identities=17% Similarity=0.140 Sum_probs=108.2
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccc--hHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRN--RKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (211)
||+||||+|+|+.+..|++||+.+|+..+++|+++||+++..... ....+..++..+++.+.+.++.+..+....+..
T Consensus 1 yk~Ilv~~D~s~~s~~a~~~a~~~a~~~~~~l~ll~V~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (135)
T d2z3va1 1 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVPKEDAL 80 (135)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECCCCTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHCCCGGGEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccccccchhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 799999999999999999999999999999999999998654332 222333444445555556666554434455667
Q ss_pred EeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEE
Q 028280 81 VTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV 134 (211)
+..|+ +.++|++++++.++||||||+++++++.+ +||++++|+++++||||+|
T Consensus 81 ~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~ll~~~~~pVlvV 135 (135)
T d2z3va1 81 LLEGV-PAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLV 135 (135)
T ss_dssp EEESC-HHHHHHHHHHHTTCSEEEEESSCSSSCBCSSCBHHHHHHHHHCSSCEEEE
T ss_pred EEcCC-hHHHHHHHhhhhheeeEEeccCCCCcccccccCcHHHHHHHhCCCCEEeC
Confidence 78899 99999999999999999999999999988 9999999999999999997
No 3
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}
Probab=99.93 E-value=5e-26 Score=167.09 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=105.9
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccc-----hHHHHHHHHHHHHHHHHHHHHHhhhCCCc
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRN-----RKKLRLLRLKGYQLALSFKDICNDFFNTN 76 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 76 (211)
|||+||||+|+|+.++.|++||..+|+..+++|+++||++...... ....+..+...++..+.+...+.+.....
T Consensus 1 myk~ILv~vD~s~~s~~al~~A~~~a~~~~~~v~~lhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (140)
T d1jmva_ 1 MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPI 80 (140)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSSCC
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEEEeeecccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCce
Confidence 8999999999999999999999999999999999999998754321 11112222222344555555655543444
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 77 VEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 77 ~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
.+..+..|+ +.++|.+++++.++||||||++++++. .+||++++++++++||||+||..
T Consensus 81 ~~~~~~~~~-~~~~I~~~a~~~~~dliV~G~~~~~~~-~lgs~~~~li~~~~~pVliVp~~ 139 (140)
T d1jmva_ 81 SEKLSGSGD-LGQVLSDAIEQYDVDLLVTGHHQDFWS-KLMSSTRQVMNTIKIDMLVVPLR 139 (140)
T ss_dssp CCEEEEEEC-HHHHHHHHHHHTTCCEEEEEECCCCHH-HHHHHHHHHHTTCCSEEEEEECC
T ss_pred EEEEEEecC-HHHHHHHhhhhchhhEEEeccCCCCCC-CcccHHHHHHhccCCCEEEEecC
Confidence 556677788 999999999999999999999988754 39999999999999999999864
No 4
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.93 E-value=2.2e-25 Score=164.85 Aligned_cols=134 Identities=19% Similarity=0.098 Sum_probs=103.2
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccch-------HHHHHHHHHHHHHHHHHHHHHhhhCC
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNR-------KKLRLLRLKGYQLALSFKDICNDFFN 74 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~ 74 (211)
.||+||||+|+|+.+..|++||+.+|+..++.++++++.+....... ......++..++.++.+++.+.+.+.
T Consensus 4 ~yk~ILv~vD~s~~s~~al~~A~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 83 (147)
T d1tq8a_ 4 AYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAGA 83 (147)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHTTTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTTC
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHhcCCCEEEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 48999999999999999999999999876666655555443222110 11122223345566667777666544
Q ss_pred CcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 75 TNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 75 i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
..++..+..|+ +.++|+++++++++||||||+++++++.+ +||++++|+++++|||||||+
T Consensus 84 ~~~~~~~~~G~-~~~~i~~~a~~~~~dlIv~g~~~~~~~~~~l~Gs~~~~ll~~~~~pVlvV~~ 146 (147)
T d1tq8a_ 84 KNVEERPIVGA-PVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHT 146 (147)
T ss_dssp CEEEEEEECSS-HHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECC
T ss_pred CcEEEEEEecC-hHHHHHHhhhccceeEEEecCCCCCcccccccccHHHHHHHhCCCCEEEEec
Confidence 45888999999 99999999999999999999999999888 999999999999999999986
No 5
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.92 E-value=1e-24 Score=165.82 Aligned_cols=137 Identities=23% Similarity=0.327 Sum_probs=102.9
Q ss_pred CCeEEEEecCCH---------HHHHHHHHHHHhhccCCC---EEEEEEEecCCCcc---------chH-HHH---HHHHH
Q 028280 3 VKKIVVIVEDVD---------AARAALLWALQNLLRFGD---VVTLLHVFPSLNSR---------NRK-KLR---LLRLK 57 (211)
Q Consensus 3 ~k~ILv~vD~s~---------~s~~al~~A~~la~~~~a---~l~llhV~~~~~~~---------~~~-~~~---~~~~~ 57 (211)
.+|||||+|+|. .|++|++||+.++.+.++ .|+++||.+..... ... ..+ ...+.
T Consensus 1 p~ki~vavd~s~~~~~~~~~~~S~~Al~wal~~~~~~~~~~~~L~~vhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (171)
T d2gm3a1 1 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAK 80 (171)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHH
T ss_pred CCEEEEEEcCCcccCCCCCCHHHHHHHHHHHHHHHHCCCCCcEEEEEEeccccccccccccccccCHHHHHHHHHHHHHH
Confidence 369999999985 899999999999988776 69999998753321 111 111 12233
Q ss_pred HHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEc
Q 028280 58 GYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 58 ~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~ 135 (211)
..++++.+.+.+... ++.+++.+..|+ +.++|++++++.++||||||+++++.+.+ +||++++|+++++||||+||
T Consensus 81 ~~~~l~~~~~~~~~~-~~~~~~~v~~G~-~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~lGSv~~~vi~~~~cpVlvV~ 158 (171)
T d2gm3a1 81 GLHLLEFFVNKCHEI-GVGCEAWIKTGD-PKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIK 158 (171)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEEEEESC-HHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHHHHHHHhc-CCceEEEEEeCC-hHHHHHHHHhhcCCcEEEeccCCccccccCccCcHHHHHHhCCCCCEEEEe
Confidence 445556666666654 789999999999 99999999999999999999999999988 99999999999999999999
Q ss_pred CCCCCC
Q 028280 136 QPAASP 141 (211)
Q Consensus 136 ~~~~~~ 141 (211)
+.....
T Consensus 159 ~~~~~~ 164 (171)
T d2gm3a1 159 RNADET 164 (171)
T ss_dssp CCGGGS
T ss_pred CCCCCC
Confidence 765444
No 6
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}
Probab=99.90 E-value=3.3e-24 Score=156.60 Aligned_cols=126 Identities=12% Similarity=0.167 Sum_probs=100.9
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccc--------hHHHHHHHHHHHHHHHHHHHHHhh--
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRN--------RKKLRLLRLKGYQLALSFKDICND-- 71 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~-- 71 (211)
+||+||||+|+|+.|+.|++||..+|+.++++|+++||+++..... ....+..++..+...+.+.+++++
T Consensus 3 ~mk~ILv~~D~S~~s~~al~~A~~~a~~~~a~l~llhv~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~l~~~~~~~~ 82 (138)
T d1q77a_ 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKLT 82 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHhhhhccceEEEEEEccCcccccccccccccchhhhhhhhhhhhccccchhhccccc
Confidence 6899999999999999999999999999999999999987422110 001112223333444455555544
Q ss_pred hCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEc
Q 028280 72 FFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 72 ~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~ 135 (211)
..+..+++.+..|+ +.+.|.+++++.++||||||+++++.+. +++..++||+||||
T Consensus 83 ~~~~~~~~~v~~G~-~~~~I~~~a~~~~~DLIV~Gs~g~~~l~-------r~l~g~~~~~livk 138 (138)
T d1q77a_ 83 GSTEIPGVEYRIGP-LSEEVKKFVEGKGYELVVWACYPSAYLC-------KVIDGLNLASLIVK 138 (138)
T ss_dssp SCCCCCCEEEECSC-HHHHHHHHHTTSCCSEEEECSCCGGGTH-------HHHHHSSSEEEECC
T ss_pred ccceeEEEeeecch-hHHHHHHhhhhccCCEEEEecCCCcHHH-------HHhcCCCCCEEEeC
Confidence 35788899999999 9999999999999999999999998886 79999999999986
No 7
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]}
Probab=95.51 E-value=0.18 Score=38.27 Aligned_cols=100 Identities=9% Similarity=0.011 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHhhccCCC-EEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe------eC
Q 028280 12 DVDAARAALLWALQNLLRFGD-VVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT------EG 84 (211)
Q Consensus 12 ~s~~s~~al~~A~~la~~~~a-~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~------~G 84 (211)
.++...+|++.|+++....++ +++++.+.+.... +.+++..+. |.+--+.+. .|
T Consensus 35 iNp~D~~AlE~Al~lke~~~g~~Vtvls~Gp~~a~-----------------~~lr~alAm--GaD~avli~~~~~~~~~ 95 (246)
T d1efpb_ 35 MNPFDEIAVEEAIRLKEKGQAEEIIAVSIGVKQAA-----------------ETLRTALAM--GADRAILVVAADDVQQD 95 (246)
T ss_dssp ECHHHHHHHHHHHHHHTTTSCSEEEEEEEESGGGH-----------------HHHHHHHHH--TCSEEEEEECCSSTTCC
T ss_pred cCccCHHHHHHHHHHhhcCCCeEEEEEEecCcchH-----------------HHHHHHHhh--cCChheEEeeccccccc
Confidence 467889999999999999776 8999999875211 113333332 333333332 22
Q ss_pred CCH---HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 85 DQE---GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 85 ~~~---~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
.|+ +..+..+++..++|||++|.....+-. |.+.-.+....+.|.+
T Consensus 96 ~d~~ata~~la~~~~~~~~DLIl~G~~s~D~~t--gqvg~~lAe~Lg~P~v 144 (246)
T d1efpb_ 96 IEPLAVAKILAAVARAEGTELIIAGKQAIDNDM--NATGQMLAAILGWAQA 144 (246)
T ss_dssp CCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCC--CCHHHHHHHHHTCEEE
T ss_pred cCHHHHHHHHHHHHhhcCCCEEEEEeeeccccc--cchhHHHHHHhhccce
Confidence 223 356778888899999999998766533 4444455555566654
No 8
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}
Probab=95.49 E-value=0.11 Score=38.55 Aligned_cols=100 Identities=11% Similarity=0.027 Sum_probs=66.8
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCC-EEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGD-VVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a-~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v 81 (211)
-++|+|++-|..+|-.++..+..+....+. .+.++||...... .. ....+.++++|++. |+++.+.-
T Consensus 24 ~~kv~Va~SGG~DS~~Ll~lL~~~~~~~~~~~i~~~~vdh~~r~--~s---------~~~~~~~~~~~~~l-~i~~~i~~ 91 (216)
T d1wy5a1 24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRE--SA---------ERDEEFCKEFAKER-NMKIFVGK 91 (216)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSST--HH---------HHHHHHHHHHHHHH-TCCEEEEE
T ss_pred CCeEEEEeCCcHHHHHHHHHHHHHHHhcCCCcEEEEEeeccccc--ch---------hhhhhHHHHHHHhh-hhhhhhhc
Confidence 368999999999999888888887776664 7999998654221 11 11123466667665 67665542
Q ss_pred ee--------CCCH--------HHHHHHHHHHhCCCEEEEecCCCCccc
Q 028280 82 TE--------GDQE--------GARIAALVREIGASALVVGLHDRSFLH 114 (211)
Q Consensus 82 ~~--------G~~~--------~~~I~~~a~~~~adLIVmG~~~~~~~~ 114 (211)
.. +.+. ...+..+|++.++|.|++|.|.....+
T Consensus 92 ~~~~~~~~~~~~~~~~~~R~~Ry~~l~~~a~~~~~~~ia~GH~~dD~~E 140 (216)
T d1wy5a1 92 EDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLLE 140 (216)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHHHH
T ss_pred cchhhhccCCccchHHHHHHHHHHHhhhhccccccceeEeeeeccchHH
Confidence 21 1101 245778899999999999988655444
No 9
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]}
Probab=95.30 E-value=0.2 Score=38.38 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHhhccCCC--EEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe----eCC
Q 028280 12 DVDAARAALLWALQNLLRFGD--VVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT----EGD 85 (211)
Q Consensus 12 ~s~~s~~al~~A~~la~~~~a--~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~----~G~ 85 (211)
.++...+|++.|+++-...|. +++++.+.++.. .+.+++.++. |.+--+.+. .|.
T Consensus 35 iNp~D~~AlE~Al~lke~~gg~~~Vtvvt~Gp~~a-----------------~~~Lr~alAm--GaD~avli~d~~~~~~ 95 (262)
T d3clsc1 35 LNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDRV-----------------DESLRKCLAK--GADRAVRVWDDAAEGS 95 (262)
T ss_dssp ECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCTTH-----------------HHHHHHHHHT--TCSEEEEECCGGGTTC
T ss_pred cCcccHHHHHHHHHHHhcCCCceEEEEEeccchhH-----------------HHHHHHHHhc--CCCeeEEEeccccccc
Confidence 467789999999999988765 788888876521 1123333332 433223332 233
Q ss_pred C---HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 86 Q---EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 86 ~---~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
| .+..|..++++.++|||++|.....+-. |.+.-.+....+.|.+
T Consensus 96 d~~~tA~~lA~~i~~~~~DLIl~G~~s~D~~~--gqvg~~lAe~Lg~P~v 143 (262)
T d3clsc1 96 DAIVVGRILTEVIKKEAPDMVFAGVQSSDQAY--ASTGISVASYLNWPHA 143 (262)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESCCTTTCC--CCHHHHHHHHHTCCEE
T ss_pred hHHHHHHHHHHHhhccCCcEEEEeeeccCCCc--chHHHHHHHHcCCceE
Confidence 3 3566778888999999999998765433 5555566666666654
No 10
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.70 E-value=1.5 Score=33.00 Aligned_cols=100 Identities=9% Similarity=-0.103 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHhhccCCCE-EEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee------C
Q 028280 12 DVDAARAALLWALQNLLRFGDV-VTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE------G 84 (211)
Q Consensus 12 ~s~~s~~al~~A~~la~~~~a~-l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~------G 84 (211)
.++...+|++.|+++..+.++. ++++...+... .+.+++.... |..--..+.. +
T Consensus 35 iNp~D~~AlE~Al~lke~~gg~~v~v~~~gp~~a-----------------~~~lr~ala~--Gad~avli~~~~~~~~~ 95 (252)
T d1efvb_ 35 MNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQC-----------------QETIRTALAM--GADRGIHVEVPPAEAER 95 (252)
T ss_dssp ECHHHHHHHHHHHHHHHTTSCSEEEEEEEESTTH-----------------HHHHHHHHHH--TCSEEEEEECCHHHHTT
T ss_pred cCcccHHHHHHHHHHhhhcCCceEEEEEecchhH-----------------HHHHHHHHhc--CCcceEEEEeccccccc
Confidence 4678899999999999987765 55555544311 0112222222 3332223321 1
Q ss_pred CCH---HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 85 DQE---GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 85 ~~~---~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
.+. +..+..+++..++|||++|.....+-. |.+.-.+....+.|.+
T Consensus 96 ~~~~~~a~~~a~~~~~~~~DLIl~G~~s~D~~t--gqVg~~lAe~Lg~P~v 144 (252)
T d1efvb_ 96 LGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDC--NQTGQMTAGFLDWPQG 144 (252)
T ss_dssp CCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCC--CCHHHHHHHHHTCCEE
T ss_pred ccHHHHHHHHHHHHhccCCCEEEEeccchhccC--CcHHHHHHHhcCCCce
Confidence 112 345666777789999999998766443 4455556666666654
No 11
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]}
Probab=90.25 E-value=0.16 Score=37.14 Aligned_cols=126 Identities=11% Similarity=0.011 Sum_probs=68.8
Q ss_pred CCeEEEEe--cCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccc-----hHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 028280 3 VKKIVVIV--EDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRN-----RKKLRLLRLKGYQLALSFKDICNDFFNT 75 (211)
Q Consensus 3 ~k~ILv~v--D~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~i 75 (211)
..++||=. |..-..-.||..|.+ .+..|+.++|.++..... ............+.+..+++-+++. |.
T Consensus 5 p~~~lvWfr~DLRl~DN~aL~~A~~----~~~~vi~vyi~dp~~~~~~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~-g~ 79 (204)
T d1np7a2 5 PPTVLVWFRNDLRLHDHEPLHRALK----SGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKV-GN 79 (204)
T ss_dssp CCEEEEEESSCCCSTTCHHHHHHHH----TTSEEEEEEEECGGGGSBCTTSCBSSCHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred CCcEEEEeCCCCccccHHHHHHHHh----cCCcEEEEEEECchHhcCcccccccccHHHHHHHHHHHHHHHHHHHhc-cc
Confidence 34555533 444444456666653 567899999987532110 0000111112223333344444433 44
Q ss_pred cEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcCC
Q 028280 76 NVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 76 ~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
. ..+..|+ +.+.|.+++++++++-|..-.. .+..+. .-.-..+-+...++.+-.....
T Consensus 80 ~--L~v~~G~-~~~~l~~l~~~~~i~~V~~n~~-~~~~e~~rd~~v~~~l~~~~i~~~~~~~~ 138 (204)
T d1np7a2 80 K--LLVTTGL-PEQVIPQIAKQINAKTIYYHRE-VTQEELDVERNLVKQLTILGIEAKGYWGS 138 (204)
T ss_dssp C--EEEEESC-HHHHHHHHHHHTTEEEEEEECC-CSHHHHHHHHHHHHHHHHHTCEEEEECCS
T ss_pred h--hhhhhhh-hHHHHHHHHHHhhhhheeeecc-ccHHHHHHHHHHhhhhccceeeeEeccCc
Confidence 4 4567899 9999999999999999887543 222222 2222233445567887776543
No 12
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]}
Probab=90.17 E-value=0.45 Score=34.50 Aligned_cols=98 Identities=9% Similarity=0.035 Sum_probs=58.8
Q ss_pred CCCEEEEEEEecCCCc----cchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEE
Q 028280 30 FGDVVTLLHVFPSLNS----RNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVV 105 (211)
Q Consensus 30 ~~a~l~llhV~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVm 105 (211)
.+..|..++|.++... ........+.+ .+..+.+-+++. |... .+..|+ +.+.+.+.+++++++.|..
T Consensus 25 ~~~~v~~vyi~dp~~~~~~~~~~~r~~fl~~----sL~~L~~~L~~~-g~~L--~i~~G~-~~~~l~~l~~~~~i~~v~~ 96 (202)
T d1owla2 25 QSAQLIGLFCLDPQILQSADMAPARVAYLQG----CLQELQQRYQQA-GSRL--LLLQGD-PQHLIPQLAQQLQAEAVYW 96 (202)
T ss_dssp HCSCEEEEEEECHHHHTCTTCCHHHHHHHHH----HHHHHHHHHHHH-TSCE--EEEESC-HHHHHHHHHHHTTCSEEEE
T ss_pred cCCcEEEEEEEcchHhcchhhhHHHHHHHHH----HHHHHHHhhhcc-ccce--EEEEee-eeccchhhccccccceeEE
Confidence 4678999999975211 11122222222 222333333332 4443 567899 9999999999999999888
Q ss_pred ecCCCCcccc-cccHHHHHHccCCceEEEEcC
Q 028280 106 GLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 106 G~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~ 136 (211)
...-. ..++ .-....+.+...++.+-.+..
T Consensus 97 ~~~~~-~~~~~rd~~i~~~~~~~~i~~~~~~~ 127 (202)
T d1owla2 97 NQDIE-PYGRDRDGQVAAALKTAGIRAVQLWD 127 (202)
T ss_dssp ECCCS-HHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred eeecc-chhhhHHHHHhhhhhhcccccccccc
Confidence 76443 2222 223444666777888877754
No 13
>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=88.93 E-value=0.7 Score=33.97 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=59.6
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhcc-CCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLR-FGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEII 80 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~-~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 80 (211)
.-++|+|++-|..+|-.++..+..+... .+.++.++||....... .. ...+.++++|.++ ++++.+.
T Consensus 12 ~~kkvlva~SGG~DS~~Ll~ll~~~~~~~~~~~l~~~~vdh~~r~~-s~----------~~~~~~~~~~~~~-~i~~~i~ 79 (227)
T d1ni5a1 12 TSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSAN-AD----------AWVTHCENVCQQW-QVPLVVE 79 (227)
T ss_dssp TCSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSS-HH----------HHHHHHHHHHHHT-TCCEEEE
T ss_pred CCCcEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCcc-hh----------hhHHHHHHHHhhc-cCcceee
Confidence 3589999999999999888877776544 57899999997643221 11 1123366677764 6666554
Q ss_pred EeeC----CCHH------HHHHHHHHHhCCCEEEEecCCCC
Q 028280 81 VTEG----DQEG------ARIAALVREIGASALVVGLHDRS 111 (211)
Q Consensus 81 v~~G----~~~~------~~I~~~a~~~~adLIVmG~~~~~ 111 (211)
-... .+.. ......+...+++.|++|.|...
T Consensus 80 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~i~~gH~~dD 120 (227)
T d1ni5a1 80 RVQLAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLDD 120 (227)
T ss_dssp CCCCCCSSSTTTTHHHHHHHHHHHHTCCTTEEEECCCCHHH
T ss_pred eccccccccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 2221 1011 11222334567888888866443
No 14
>d2j07a2 c.28.1.1 (A:2-171) DNA photolyase {Thermus thermophilus [TaxId: 274]}
Probab=87.42 E-value=0.8 Score=32.24 Aligned_cols=105 Identities=15% Similarity=0.087 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHH
Q 028280 17 RAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVR 96 (211)
Q Consensus 17 ~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~ 96 (211)
..||..|.+ . +.+..+.+.++....... .......+.++.+.+.+++. |. ...+..|+ +.+.|.+.++
T Consensus 16 n~aL~~A~~----~-~~vi~vfi~d~~~~~~~~---~r~~fl~~sL~~L~~~L~~~-g~--~L~v~~G~-~~~~l~~l~~ 83 (170)
T d2j07a2 16 HPALLEALA----R-GPVVGLVVLDPNNLKTTP---RRRAWFLENVRALREAYRAR-GG--ALWVLEGL-PWEKVPEAAR 83 (170)
T ss_dssp CHHHHHHHT----T-SCEEEEEEECHHHHSSCH---HHHHHHHHHHHHHHHHHHHT-TC--CEEEEESC-HHHHHHHHHH
T ss_pred hHHHHHHHh----c-CCEEEEEEEecccchhhH---HHHHHHHHHHHHHHHhhhcc-cc--chhhhhhh-HHHHHHHHHH
Confidence 356666542 2 357788888653211111 11111222233344443332 43 44678899 9999999999
Q ss_pred HhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 97 EIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 97 ~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+++++-|.+-..- +..++ .....|.....++.-++-.
T Consensus 84 ~~~i~~V~~n~~~-~~~~~--~rd~~v~~~l~~~~~~l~~ 120 (170)
T d2j07a2 84 RLKAKAVYALTSH-TPYGR--YRDGRVREALPVPLHLLPA 120 (170)
T ss_dssp HTTCSEEEEECCC-SHHHH--HHHHHHHHHCSSCEEEECC
T ss_pred HhhhhHHHhhccc-hhhhh--HHHHHHHhhhccCceeecc
Confidence 9999999876432 22221 1223444455677655543
No 15
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
Probab=86.81 E-value=2 Score=30.01 Aligned_cols=66 Identities=14% Similarity=0.215 Sum_probs=48.3
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH---hCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~---~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
..+.++++ |++++..+..+....+.+.+++++ .+++.+|.++.....+ +.-+.-++.+||+-|+..
T Consensus 21 a~~~L~~~-gI~~e~~v~SAHR~p~~l~~~~~~~e~~~~~viIa~AG~aaaL------pgvva~~t~~PVIgvP~~ 89 (159)
T d1u11a_ 21 ADALLTEL-EIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHL------PGMCAAWTRLPVLGVPVE 89 (159)
T ss_dssp HHHHHHHT-TCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCH------HHHHHHHCSSCEEEEEEC
T ss_pred HHHHHHHh-CCceEEEEehHhhChHHHHHHHHHHHhcCCeEEEEEecCCCCC------ccceeeecceeEEEeccc
Confidence 33444444 999999999887667777777764 5789999998544433 345677889999999854
No 16
>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=86.29 E-value=2 Score=29.02 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=49.3
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEG 84 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G 84 (211)
++|+-+.+.- |- -|..++.+.|.++..+|..... ...+...++.+.+.++. ++.+....+..
T Consensus 6 k~l~LlSGGi-Sp----VAa~lmmkRG~~V~~v~f~~~~---------~~~ekv~~l~~~L~~y~---~~~~~~~~v~~- 67 (132)
T d1vbka1 6 RMIGILHDEL-SA----LAIFLMMKRGVEVIPVYIGKDD---------KNLEKVRSLWNLLKRYS---YGSKGFLVVAE- 67 (132)
T ss_dssp EEEEECSSHH-HH----HHHHHHHHBTCEEEEEEESCSS---------HHHHHHHHHHHHHHTTC---TTSCCCCEEES-
T ss_pred eEEEeecCCc-hH----HHHHHHHHCCCEEEEEEEcCCH---------HHHHHHHHHHHHHHHhC---CCCCcEEEEee-
Confidence 4445554443 32 3566777789999999994321 11122223333333332 34554444442
Q ss_pred CCHHHHHHHHHHHhCCCEEEEec
Q 028280 85 DQEGARIAALVREIGASALVVGL 107 (211)
Q Consensus 85 ~~~~~~I~~~a~~~~adLIVmG~ 107 (211)
..+.+.+.|++.+++-+|.|-
T Consensus 68 --~~~~~~riA~~~~a~~ivtG~ 88 (132)
T d1vbka1 68 --SFDRVLKLIRDFGVKGVIKGL 88 (132)
T ss_dssp --SHHHHHHHHHHHTCCEEECCC
T ss_pred --HHHHHHHHHHHhhhhceEEEE
Confidence 457788999999999999885
No 17
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
Probab=86.10 E-value=2.7 Score=29.14 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=48.4
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH---hCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~---~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
..+.++++ |++++..+..+..-.+.+.+++++ .+++.+|.++.....+ +.-+..++..||+-||..
T Consensus 20 a~~~L~~~-gi~~~~~v~SAHrtp~rl~~~~~~~~~~~~~viIa~AG~aa~L------pgvva~~t~~PVIgVP~~ 88 (155)
T d1xmpa_ 20 ACDILDEL-NIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHL------PGMVAAKTNLPVIGVPVQ 88 (155)
T ss_dssp HHHHHHHT-TCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCH------HHHHHTTCCSCEEEEEEC
T ss_pred HHHHHHHc-CCcEEEEEechhcChHHHHHHHHHHHhhcceEEEeecccCCCc------hhHHHHhccceEEEEEee
Confidence 44444444 999999998888677778777775 4677888887655443 345677889999999864
No 18
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]}
Probab=84.09 E-value=4.9 Score=27.99 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=47.0
Q ss_pred HHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH---hCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 66 KDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 66 ~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~---~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
.+.++++ |++++..+.....-.+.+.+++++ .+++.+|.|+.+...+ .--+.-++..||+-|+..
T Consensus 21 ~~~L~~~-gI~~e~~v~SAHRtp~~l~~~~~~~~~~~~~ViIa~AG~aa~L------pgvvA~~t~~PVIgVP~~ 88 (163)
T d1qcza_ 21 AEIFEIL-NVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHL------PGMIAAKTLVPVLGVPVQ 88 (163)
T ss_dssp HHHHHHH-TCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEECSSCCH------HHHHHHSCSSCEEEEECC
T ss_pred HHHHHHc-CCCeEEEEeccccCHHHHHHHHHHHHHcCCeEEEEeccCCCcc------cchhhHhccceeeecccc
Confidence 3334444 999999998887667777777666 5688999888654443 234677899999999864
No 19
>d2iela1 c.26.2.4 (A:2-135) Hypothetical protein TTC0031 {Thermus thermophilus [TaxId: 274]}
Probab=81.49 E-value=5.5 Score=26.43 Aligned_cols=126 Identities=11% Similarity=0.013 Sum_probs=72.5
Q ss_pred eEEEEecCCHHHHHHHHHHHH-hhccCCCEEEEEE-EecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCc-EEEEE
Q 028280 5 KIVVIVEDVDAARAALLWALQ-NLLRFGDVVTLLH-VFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTN-VEIIV 81 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~-la~~~~a~l~llh-V~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~-~~~~v 81 (211)
++||.-+-+-.|...++.... +.....+...++- ..+..... .......+...+++...+..+.. .|++ .+.++
T Consensus 2 R~LVlAnqTv~s~EL~~eLrr~i~ad~~a~y~vvVPA~p~~~g~-a~t~g~~~~A~~~a~atl~~L~~--~g~~~A~gel 78 (134)
T d2iela1 2 RYLVVAHRTAKSPELAAKLKELLAQDPEARFVLLVPAVPPPGWV-YEENEVRRRAEEEAAAAKRALEA--QGIPVEEAKA 78 (134)
T ss_dssp EEEEECSTTTTCHHHHHHHHHHHHHCTTCEEEEEEEEECCCCSC-C--CHHHHHHHHHHHHHHHHHHT--TTCCCSEEEE
T ss_pred cEEEEeccccCCHHHHHHHHHHhccCCceEEEEEEeCCCCCcch-hhhcCchHHHHHHHHHHHHHHHh--CCCccccccc
Confidence 678888877788888887766 4444445544322 22222211 11111122333344444444443 2777 46777
Q ss_pred eeCCCHHHHHHHHHHH-hCCCE-EEEecCCCCcccccccHHHHHHccCCceEEEE
Q 028280 82 TEGDQEGARIAALVRE-IGASA-LVVGLHDRSFLHKLAMSHNDISSSFNCRVLAI 134 (211)
Q Consensus 82 ~~G~~~~~~I~~~a~~-~~adL-IVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV 134 (211)
.+-. |..+|.+.... .++|= ||+.+........++...-.-.++...||.-|
T Consensus 79 Gd~~-Pl~al~~av~~~~~p~q~IVisTLPp~~S~Wlr~DV~~raRr~~lPVthv 132 (134)
T d2iela1 79 GDIS-PLLAIEEELLAHPGAYQGIVLSTLPPGLSRWLRLDVHTQAERFGLPVIHV 132 (134)
T ss_dssp EESS-HHHHHHHHHHHSTTSCSEEEEEECCTTTCHHHHTTHHHHGGGGSSCEEEE
T ss_pred CCcC-hHHHHHHHHhcCCCCcceEEEEcCCcchhhHHhhhHHHHHHHcCCCeEEe
Confidence 7777 99999998876 44554 99998776543324442245567889998654
No 20
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Probab=80.59 E-value=4.8 Score=28.18 Aligned_cols=66 Identities=15% Similarity=0.285 Sum_probs=48.0
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH---hCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVRE---IGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~---~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
..+.++++ |++++..+..+..-.+.+.+++++ .+++.+|.|+.+...+ +.-+...+..||+-||..
T Consensus 19 a~~~L~~~-gi~~~~~v~saHr~p~rl~~~~~~~~~~~~~viIa~AG~aa~L------pgvvA~~t~~PVIgvP~~ 87 (169)
T d1o4va_ 19 AAEILEEF-GIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHL------PGMVASITHLPVIGVPVK 87 (169)
T ss_dssp HHHHHHHT-TCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCH------HHHHHHHCSSCEEEEEEC
T ss_pred HHHHHHHc-CCcEEEEEeeeecCHHHHHHHHHHHHhcCCeEEEEeecCCcCc------hHHHHHhcceeEEecccc
Confidence 34444444 999999998888667777777776 4678999998665543 234667789999999863
No 21
>d3clsd1 c.26.2.3 (D:1-192) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Methylophilus methylotrophus [TaxId: 17]}
Probab=79.92 E-value=7.8 Score=27.22 Aligned_cols=103 Identities=15% Similarity=0.028 Sum_probs=65.3
Q ss_pred eEEEEecC-----CHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEE
Q 028280 5 KIVVIVED-----VDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEI 79 (211)
Q Consensus 5 ~ILv~vD~-----s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~ 79 (211)
+|||-++. .+.+..++..|..++...|.+++++-+.+.... . ..++ ..+ |...-.
T Consensus 2 kIlV~~E~~~g~l~~~slEll~~A~~la~~~g~~v~avv~G~~~~~---~---------------~~~l-~~~-Ga~~v~ 61 (192)
T d3clsd1 2 KILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADA---F---------------VPAL-SVN-GVDELV 61 (192)
T ss_dssp EEEEECCEETTEECTHHHHHHHHHHHHCSSTTCEEEEEEESTTGGG---G---------------HHHH-CBT-TCSEEE
T ss_pred eEEEEEEccCCEECHHHHHHHHHHHHHHHhcCCcEEEEEeCCchHH---H---------------Hhhh-hhc-CceEEE
Confidence 67777763 457899999999999999999999888643211 0 1111 112 444333
Q ss_pred EEeeCC------CHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEE
Q 028280 80 IVTEGD------QEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVL 132 (211)
Q Consensus 80 ~v~~G~------~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVL 132 (211)
.+-... .....|...+++.++++|+++....+ + .++-++..+.++|++
T Consensus 62 ~~~~~~~~~~~~~~~~al~~~~~~~~p~~Vl~~~t~~g---r--dlaprlAa~L~~~~v 115 (192)
T d3clsd1 62 VVKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDS---L--GYASSLASKTGYGFA 115 (192)
T ss_dssp EEECSCSSCCHHHHHHHHHHHHHHHCCSEEEEESSHHH---H--TTHHHHHHHSSCEEE
T ss_pred EecCcccccCHHHHHHHHHHHHhhcccceEEecCChhH---H--HHHHHHHHhhCcCee
Confidence 322211 12467888899999999999963221 1 134467777777775
No 22
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=79.16 E-value=6.9 Score=26.14 Aligned_cols=50 Identities=8% Similarity=-0.160 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHcc--CCceEEEEc
Q 028280 86 QEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSS--FNCRVLAIK 135 (211)
Q Consensus 86 ~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~--a~~PVLvV~ 135 (211)
.+.+.++++++++++|+|.+...-.+....+-.+.+.+-.. .++||++=-
T Consensus 41 ~p~e~iv~a~~~~~~d~v~lS~~~~~~~~~~~~~~~~l~~~~~~~i~iivGG 92 (137)
T d1ccwa_ 41 SPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp ECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred cCHHHHHHHHHhcCCCEEEEeeccccchHHHHHHHHHHHHhccCCCEEEEeC
Confidence 38999999999999999999887665544355554444322 358877654
No 23
>d1u3da2 c.28.1.1 (A:13-197) Cryptochrome {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=77.04 E-value=5.6 Score=27.80 Aligned_cols=111 Identities=16% Similarity=0.083 Sum_probs=60.7
Q ss_pred HHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH
Q 028280 18 AALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVRE 97 (211)
Q Consensus 18 ~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~ 97 (211)
.||..|.+. +.+..|.+.++.................+.+..+.+.+++. |....+ ...|+ +.+.|.+.+++
T Consensus 16 ~aL~~A~~~-----~~vi~vfi~dp~~~~~~~~~~~~~~fl~~sL~~L~~~L~~~-g~~L~v-~~~g~-~~~~l~~l~~~ 87 (185)
T d1u3da2 16 PALAAAVRA-----GPVIALFVWAPEEEGHYHPGRVSRWWLKNSLAQLDSSLRSL-GTCLIT-KRSTD-SVASLLDVVKS 87 (185)
T ss_dssp HHHHHHHHH-----SCEEEEEEECGGGGTTCCCCHHHHHHHHHHHHHHHHHHHHT-TCCEEE-EECSC-HHHHHHHHHHH
T ss_pred HHHHHHHhC-----CCEEEEEEEcchHhcccChHHHHHHHHHHHHHHHHHHHHhc-CCcceE-eeccc-hHHHHHHHHHh
Confidence 466655432 36888888876432110000111112223333344444333 444322 23577 99999999999
Q ss_pred hCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcCC
Q 028280 98 IGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 98 ~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
++++-|.....-. ..+. .-.-..+.+...++.+-.....
T Consensus 88 ~~i~~v~~n~~~~-~~e~~rd~~v~~~l~~~gi~~~~~~~~ 127 (185)
T d1u3da2 88 TGASQIFFNHLYD-PLSLVRDHRAKDVLTAQGIAVRSFNAD 127 (185)
T ss_dssp HTCCEEEEECCCS-HHHHHHHHHHHHHHHTTTCEEEEECCS
T ss_pred cCCceEEEecccc-HHHHHHHHHHHHHHHHcCCceeecCCc
Confidence 9999998876532 2222 2223345566778888877653
No 24
>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=75.39 E-value=9.7 Score=26.40 Aligned_cols=56 Identities=11% Similarity=-0.012 Sum_probs=37.5
Q ss_pred EEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHcc--CCceEEE
Q 028280 78 EIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSS--FNCRVLA 133 (211)
Q Consensus 78 ~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~--a~~PVLv 133 (211)
++.....+.+.+.+++.+.+.++|+|.+.+........+..+.+.+-.. .+++|++
T Consensus 67 eVi~lg~~~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L~~~g~~~v~Viv 124 (168)
T d7reqa2 67 DVDVGPLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILITV 124 (168)
T ss_dssp EEEECCTTBCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred ceecCCCcCcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHHHhcCCCCeEEEE
Confidence 4444444458899999999999999999987766554455555444332 2355554
No 25
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=72.65 E-value=9.8 Score=27.40 Aligned_cols=91 Identities=15% Similarity=0.003 Sum_probs=56.7
Q ss_pred EEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCC
Q 028280 7 VVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQ 86 (211)
Q Consensus 7 Lv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~ 86 (211)
||+..|+...-.+...|..+. ..|.++.++..-.. .. ...++++.+++.. ++++.. ...+.+
T Consensus 14 lvGptGvGKTTTiAKLA~~~~-~~g~kV~lit~Dt~-R~--------------gA~eQL~~~a~~l-~v~~~~-~~~~~d 75 (211)
T d2qy9a2 14 MVGVNGVGKTTTIGKLARQFE-QQGKSVMLAAGDTF-RA--------------AAVEQLQVWGQRN-NIPVIA-QHTGAD 75 (211)
T ss_dssp EECCTTSCHHHHHHHHHHHHH-TTTCCEEEECCCTT-CH--------------HHHHHHHHHHHHT-TCCEEC-CSTTCC
T ss_pred EECCCCCCHHHHHHHHHHHHH-HCCCcEEEEecccc-cc--------------cchhhhhhhhhhc-CCcccc-cccCCC
Confidence 466778877888888877765 56777776655332 11 1123355555543 666543 233444
Q ss_pred HHHHHH---HHHHHhCCCEEEEecCCCCcccc
Q 028280 87 EGARIA---ALVREIGASALVVGLHDRSFLHK 115 (211)
Q Consensus 87 ~~~~I~---~~a~~~~adLIVmG~~~~~~~~~ 115 (211)
+...+- +.++..+.|+|++.+-|++....
T Consensus 76 ~~~~l~~~~~~a~~~~~d~ilIDTaGr~~~d~ 107 (211)
T d2qy9a2 76 SASVIFDAIQAAKARNIDVLIADTAGRLQNKS 107 (211)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCCCCGGGHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccCCCccccH
Confidence 666554 44566789999999999876654
No 26
>d1gsoa2 c.30.1.1 (A:-2-103) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Escherichia coli [TaxId: 562]}
Probab=72.64 E-value=1.5 Score=28.43 Aligned_cols=22 Identities=9% Similarity=0.128 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecC
Q 028280 87 EGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~ 108 (211)
-.+.|+++++++++||+|+|..
T Consensus 54 d~~~i~~~a~~~~idlvviGPE 75 (105)
T d1gsoa2 54 DIPALLDFAQNEKIDLTIVGPE 75 (105)
T ss_dssp CHHHHHHHHHHTTCSEEEECSH
T ss_pred cHHHHHHHHHHhCcCEEEECcH
Confidence 4788999999999999999983
No 27
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}
Probab=71.28 E-value=14 Score=26.00 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHH---HhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 61 LALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVR---EIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 61 ~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~---~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+.+-+.+.+.++ .-..++.+..+. ..+++....+ ..++|.||-. |+++..+=.+.+.||+-|+..
T Consensus 12 L~~l~~~i~~ey-~~~~~i~v~~~~-~e~av~~~~~~~~~~~~DviISR----------G~ta~~ir~~~~iPVV~I~vs 79 (186)
T d2pjua1 12 LFELFRDISLEF-DHLANITPIQLG-FEKAVTYIRKKLANERCDAIIAA----------GSNGAYLKSRLSVPVILIKPS 79 (186)
T ss_dssp HHHHHHHHHTTT-TTTCEEEEECCC-HHHHHHHHHHHTTTSCCSEEEEE----------HHHHHHHHTTCSSCEEEECCC
T ss_pred HHHHHHHHHHHh-cCCceEEeecCc-HHHHHHHHHHHHHcCCCCEEEEC----------chHHHHHHHhCCCCEEEEcCC
Confidence 334456666654 344666778877 6666554444 3568887754 667888888889999999753
No 28
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}
Probab=70.63 E-value=8.2 Score=24.18 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCC-Cccc----c-cccHHHHHHccCCceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDR-SFLH----K-LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~-~~~~----~-~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
..+.|.+++++++++.||+|-... ++.. . .-..++.+ +..++||..+-+.
T Consensus 39 ~~~~l~~ii~e~~i~~iVvGlP~~~dG~~~~~~~~v~~f~~~L-~~~~lpv~~~DEr 94 (98)
T d1iv0a_ 39 DVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEAL-RARGVEVELWDER 94 (98)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHH-HHTTCEEEEECCS
T ss_pred HHHHHHHHHHhhccceeEcccccccCCCcCHHHHHHHHHHHHH-hhCCCCEEEEcCC
Confidence 367899999999999999997643 2111 1 22355554 4568999998653
No 29
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=70.56 E-value=15 Score=26.11 Aligned_cols=91 Identities=12% Similarity=0.062 Sum_probs=55.1
Q ss_pred EEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCC
Q 028280 7 VVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQ 86 (211)
Q Consensus 7 Lv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~ 86 (211)
||+..++...-.+...|..+.. .|.++.++..-.. .. . ..++++.+++.. ++.+... ...++
T Consensus 15 lvGp~GvGKTTTiaKLA~~~~~-~g~kV~lit~Dt~-R~---g-----------A~eQL~~~a~~l-~v~~~~~-~~~~~ 76 (207)
T d1ls1a2 15 LVGLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQ-RP---A-----------AREQLRLLGEKV-GVPVLEV-MDGES 76 (207)
T ss_dssp EECCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSS-CH---H-----------HHHHHHHHHHHH-TCCEEEC-CTTCC
T ss_pred EECCCCCCHHHHHHHHHHHHHH-CCCcEEEEecccc-cc---h-----------HHHHHHHHHHhc-CCccccc-cccch
Confidence 4667788777788888877765 4677665544221 11 1 112344454443 6665542 33332
Q ss_pred HHHH---HHHHHHHhCCCEEEEecCCCCcccc
Q 028280 87 EGAR---IAALVREIGASALVVGLHDRSFLHK 115 (211)
Q Consensus 87 ~~~~---I~~~a~~~~adLIVmG~~~~~~~~~ 115 (211)
+.+. ....++..+.|+|++.+-|++....
T Consensus 77 ~~~~~~~~~~~~~~~~~d~vlIDTaGr~~~d~ 108 (207)
T d1ls1a2 77 PESIRRRVEEKARLEARDLILVDTAGRLQIDE 108 (207)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCCSSCCH
T ss_pred hhHHHHHHHHHHhhccCcceeecccccchhhh
Confidence 5433 3456677899999999999887654
No 30
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=70.22 E-value=10 Score=24.02 Aligned_cols=65 Identities=9% Similarity=-0.030 Sum_probs=38.4
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
+...+++. |.++. ...+ .. +.++.+++..+|+|++...-.+.-. ..+...+-...++||+++-..
T Consensus 16 l~~~L~~~-g~~v~---~a~~-~~-eal~~~~~~~~dlillD~~mp~~~G--~~~~~~i~~~~~~pvI~lt~~ 80 (117)
T d2a9pa1 16 IKFNMTKE-GYEVV---TAFN-GR-EALEQFEAEQPDIIILDLMLPEIDG--LEVAKTIRKTSSVPILMLSAK 80 (117)
T ss_dssp HHHHHHHT-TCEEE---EESS-HH-HHHHHHHHHCCSEEEECSSCSSSCH--HHHHHHHHTTCCCCEEEEESC
T ss_pred HHHHHHHC-CCEEE---EECC-HH-HHHHHHHhcCCCEEEeccccCCCCc--cHHHHHHHhCCCCCEEEEecC
Confidence 44444432 55443 2234 44 4455667789999999986443211 125556666677999998654
No 31
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=69.36 E-value=17 Score=26.07 Aligned_cols=92 Identities=16% Similarity=0.042 Sum_probs=55.9
Q ss_pred EEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCC
Q 028280 6 IVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGD 85 (211)
Q Consensus 6 ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~ 85 (211)
+||+..|+...-.+...|..+. ..+.++.++..-..-. -..++++.+++.. ++.+... ..+.
T Consensus 15 ~lvGptGvGKTTTiAKLAa~~~-~~~~kV~lit~Dt~R~---------------gA~eQL~~~a~~l-~i~~~~~-~~~~ 76 (213)
T d1vmaa2 15 MVVGVNGTGKTTSCGKLAKMFV-DEGKSVVLAAADTFRA---------------AAIEQLKIWGERV-GATVISH-SEGA 76 (213)
T ss_dssp EEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEECTTCH---------------HHHHHHHHHHHHH-TCEEECC-STTC
T ss_pred EEECCCCCCHHHHHHHHHHHHH-HCCCceEEEeeccccc---------------chhHHHHHHhhhc-Ccccccc-CCCC
Confidence 3466778877888888887774 4577877777654311 1122355555443 5554432 2333
Q ss_pred CHHHHH---HHHHHHhCCCEEEEecCCCCcccc
Q 028280 86 QEGARI---AALVREIGASALVVGLHDRSFLHK 115 (211)
Q Consensus 86 ~~~~~I---~~~a~~~~adLIVmG~~~~~~~~~ 115 (211)
++...+ ...++..+.|+|++.+-|++....
T Consensus 77 d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~ 109 (213)
T d1vmaa2 77 DPAAVAFDAVAHALARNKDVVIIDTAGRLHTKK 109 (213)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHH
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEeccccccchH
Confidence 355433 344456789999999999987665
No 32
>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}
Probab=61.56 E-value=4.1 Score=27.40 Aligned_cols=52 Identities=19% Similarity=0.163 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCC-Cccc----c-cccHHHHHHccCCceEEEEcCCC
Q 028280 87 EGARIAALVREIGASALVVGLHDR-SFLH----K-LAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~-~~~~----~-~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
....|.+.+++++++.||+|-.-. ++-. . .-..++.+-...++||..+....
T Consensus 41 ~~~~l~~i~~e~~~~~iVvG~P~~~~g~~~~~~~~v~~f~~~L~~~~~i~V~~~DEr~ 98 (138)
T d1nu0a_ 41 DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERL 98 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_pred hHHHHHHHhhccCccEEEeecccccccchHHHHHHHHHHHHHHhhccCCCeEEEeccc
Confidence 478899999999999999996522 1111 1 22345566666799999986543
No 33
>d1dnpa2 c.28.1.1 (A:1-200) DNA photolyase {Escherichia coli [TaxId: 562]}
Probab=58.85 E-value=14 Score=25.81 Aligned_cols=75 Identities=8% Similarity=-0.064 Sum_probs=39.2
Q ss_pred CCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCC---HHHHHHHHHHHhCCCEEEEec
Q 028280 31 GDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQ---EGARIAALVREIGASALVVGL 107 (211)
Q Consensus 31 ~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~---~~~~I~~~a~~~~adLIVmG~ 107 (211)
+..|..|++.++.................+.+..+.+.+.+. |.. ..+..|+. +.+.|.+++++++++-|....
T Consensus 27 ~~~v~~vyi~dp~~~~~~~~~~~r~~fl~~sL~~L~~~L~~~-g~~--L~v~~g~~~~~~~~~l~~l~~~~~i~~v~~n~ 103 (200)
T d1dnpa2 27 SARVLALYIATPRQWATHNMSPRQAELINAQLNGLQIALAEK-GIP--LLFREVDDFVASVEIVKQVCAENSVTHLFYNY 103 (200)
T ss_dssp TSEEEEEEEECHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT-TCC--EEEEECSSHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred CCcEEEEEEEcchhhcccCcchhhhhhHHHHHHHHHhhhhhc-cce--eEEEEecccccchhHHHHHHHhcCCcEEEEec
Confidence 357999999875321100000111111222233333333332 444 44566661 455688889999999988876
Q ss_pred C
Q 028280 108 H 108 (211)
Q Consensus 108 ~ 108 (211)
.
T Consensus 104 ~ 104 (200)
T d1dnpa2 104 Q 104 (200)
T ss_dssp C
T ss_pred c
Confidence 4
No 34
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=58.78 E-value=27 Score=24.75 Aligned_cols=91 Identities=15% Similarity=0.047 Sum_probs=55.2
Q ss_pred EEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCC
Q 028280 7 VVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQ 86 (211)
Q Consensus 7 Lv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~ 86 (211)
||+..|+...-.+...|..+. ..|.++.++..-..-. . . .++++.+++.. ++.+... ..+.|
T Consensus 11 lvGptGvGKTTTiaKLA~~~~-~~g~kV~lit~Dt~R~-g--A------------~eQL~~~a~~l-~i~~~~~-~~~~d 72 (207)
T d1okkd2 11 VVGVNGVGKTTTIAKLGRYYQ-NLGKKVMFCAGDTFRA-A--G------------GTQLSEWGKRL-SIPVIQG-PEGTD 72 (207)
T ss_dssp EECSTTSSHHHHHHHHHHHHH-TTTCCEEEECCCCSST-T--H------------HHHHHHHHHHH-TCCEECC-CTTCC
T ss_pred EECCCCCCHHHHHHHHHHHHH-HCCCcEEEEEeccccc-c--c------------hhhHhhccccc-CceEEec-cCCcc
Confidence 466677777777777777665 4577777655543211 1 1 12244444433 5554433 33444
Q ss_pred HHHHHHH---HHHHhCCCEEEEecCCCCcccc
Q 028280 87 EGARIAA---LVREIGASALVVGLHDRSFLHK 115 (211)
Q Consensus 87 ~~~~I~~---~a~~~~adLIVmG~~~~~~~~~ 115 (211)
+...+-+ +++..++|+|++.+-|++....
T Consensus 73 ~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~ 104 (207)
T d1okkd2 73 PAALAYDAVQAMKARGYDLLFVDTAGRLHTKH 104 (207)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEECCCCCCTTCH
T ss_pred HHHHHHHHHHHHHHCCCCEEEcCccccchhhH
Confidence 7766644 4566789999999999887654
No 35
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=54.74 E-value=22 Score=22.50 Aligned_cols=48 Identities=6% Similarity=0.112 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
..++ .+..++.++|+|++...-.+.-. + .+...+-.+.++||+++-..
T Consensus 35 ~~~a-l~~l~~~~~dlii~D~~mp~~~G-~-~~~~~~r~~~~~pii~lt~~ 82 (121)
T d1xhfa1 35 GAEM-HQILSEYDINLVIMDINLPGKNG-L-LLARELREQANVALMFLTGR 82 (121)
T ss_dssp HHHH-HHHHHHSCCSEEEECSSCSSSCH-H-HHHHHHHHHCCCEEEEEESC
T ss_pred hHHH-HHHHHhcCCCEEEeecccCCccC-c-HHHHHHHhcCCCcEEEEECC
Confidence 4444 45556789999999986543211 1 24445555678999998653
No 36
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=54.40 E-value=22 Score=24.34 Aligned_cols=47 Identities=9% Similarity=0.093 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+++.++.+++.++|+|+|.-+-.+.-. + .+..++-...++||+++-.
T Consensus 37 g~eal~~~~~~~pDlvllDi~mP~~dG-~-e~~~~ir~~~~~pIi~lTa 83 (190)
T d1s8na_ 37 GQEAVELAELHKPDLVIMDVKMPRRDG-I-DAASEIASKRIAPIVVLTA 83 (190)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCSSSCH-H-HHHHHHHHTTCSCEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEeccccCcch-H-HHHHHHHhcCCCCEEEEeC
Confidence 445557778889999999987544211 0 2555666667899999864
No 37
>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}
Probab=50.88 E-value=28 Score=22.54 Aligned_cols=68 Identities=10% Similarity=-0.020 Sum_probs=35.7
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc-cccHHHHHHccCCceEEEEcCCC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK-LAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~-~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
++.++... |.++. ...+ ..++ ++.++++.+|+|++...-.+.-.- +-......-....+||+++-...
T Consensus 17 l~~~L~~~-g~~v~---~a~~-~~ea-l~~~~~~~~dlil~D~~~p~~~G~~~~~~ir~~~~~~~~piI~lt~~~ 85 (139)
T d1w25a1 17 LEAKLTAE-YYEVS---TAMD-GPTA-LAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALD 85 (139)
T ss_dssp HHHHHHHT-TCEEE---EESS-HHHH-HHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECSS
T ss_pred HHHHHHHC-CCEEE---EEcc-chhh-hhhhhcccceeeeeeccccCCCchHHHHHhhhcccccCCCEEEEEcCC
Confidence 44444442 55432 2333 4444 456678899999999765432111 11111111223468999996543
No 38
>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]}
Probab=49.72 E-value=35 Score=23.40 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=26.2
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
++||++-|..+|-.++.++. ..|.+++.+|+...
T Consensus 6 Kvvv~~SGG~DS~vla~ll~----k~g~~v~av~~~~~ 39 (218)
T d2c5sa1 6 KVMVLLSGGIDSPVAAYLTM----KRGVSVEAVHFHSP 39 (218)
T ss_dssp EEEEECCSSSHHHHHHHHHH----HBTEEEEEEEEECT
T ss_pred EEEEEecCcHHHHHHHHHHH----HcCCeEEEEEEeCC
Confidence 79999999988876665543 35789999999753
No 39
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=48.77 E-value=36 Score=26.07 Aligned_cols=58 Identities=9% Similarity=0.139 Sum_probs=37.7
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCC--CCcccc-ccc-HHHHHHccCCceEEEEcCC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHD--RSFLHK-LAM-SHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~--~~~~~~-~gs-~a~~vl~~a~~PVLvV~~~ 137 (211)
|+++.. +..+ ....+ .++..+|++++|++. .++.-. .|+ ...-+.++.++||+|+-+.
T Consensus 205 gi~~t~--i~ds-a~~~~---m~~~~vd~VivGad~v~~nG~~nkiGT~~~A~~Ak~~~vP~~V~~~~ 266 (340)
T d1t5oa_ 205 GIDVTL--ITDS-MVGIV---MQKGMVDKVIVGADRIVRDAVFNKIGTYTVSVVAKHHNIPFYVAAPK 266 (340)
T ss_dssp TCCEEE--ECGG-GHHHH---HHTTCCSEEEECCSEEETTEEEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred CCCcEE--Eech-hHHHH---hhccccceEeechheeehhcccccccHHHHHHHHHHhCCcEEEEecc
Confidence 777754 3333 23333 344569999999985 344333 888 4446778889999999753
No 40
>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}
Probab=48.41 E-value=36 Score=23.12 Aligned_cols=84 Identities=15% Similarity=0.110 Sum_probs=46.1
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
-++.|+.|... ++.++++++..+..+..+.+..+. ....+.+..+.+++. +++..+-.....
T Consensus 2 p~l~vAlD~~~-----~~~~~~~~~~~~~~vdiikig~~~----------~~~~G~~~i~~l~~~---~~~~~i~~d~k~ 63 (213)
T d1q6oa_ 2 PMLQVALDNQT-----MDSAYETTRLIAEEVDIIEVGTIL----------CVGEGVRAVRDLKAL---YPHKIVLADAKI 63 (213)
T ss_dssp CEEEEEECCSS-----HHHHHHHHHHHGGGCSEEEECHHH----------HHHHCTHHHHHHHHH---CTTSEEEEEEEE
T ss_pred CcEEEEecCCC-----HHHHHHHHHhcCCCccEEEeCeec----------cccCCHHHHHHHHHh---cccccceeEEee
Confidence 35778999765 444555555555566666654321 001111222233333 334444444555
Q ss_pred CCCHHHHHHHHHHHhCCCEEEEe
Q 028280 84 GDQEGARIAALVREIGASALVVG 106 (211)
Q Consensus 84 G~~~~~~I~~~a~~~~adLIVmG 106 (211)
.+ +...+...+.+.++|++.+=
T Consensus 64 ~d-~~~~~~~~~~~~gad~vtvh 85 (213)
T d1q6oa_ 64 AD-AGKILSRMCFEANADWVTVI 85 (213)
T ss_dssp CS-CHHHHHHHHHHTTCSEEEEE
T ss_pred cc-chHHHHHHHHHcCCCEEEEe
Confidence 66 66777777778889988773
No 41
>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=47.00 E-value=45 Score=23.88 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=54.2
Q ss_pred CCCCeEEEEecCCHHHHHHHHHHHHhhccCCCEE-EEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEE
Q 028280 1 MDVKKIVVIVEDVDAARAALLWALQNLLRFGDVV-TLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEI 79 (211)
Q Consensus 1 m~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l-~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~ 79 (211)
.+|.+|+|...+.++|-.|+.+|.+ .|-++ .|+++.+..... ... ... ..++ ++...+.. |++...
T Consensus 1 ~~~~~V~vl~SGGKDS~lAl~~a~~----~G~eV~~L~t~~~~~~~s-~~~-h~~---~~~l---l~~qAeal-giPl~~ 67 (226)
T d2d13a1 1 VGLADVAVLYSGGKDSNYALYWALK----SGLRVRYLVSMVSENEES-YMY-HTP---NVEL---TSLQARAL-GIPIIK 67 (226)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEEECCC--------------CCTT---HHHHHHHH-TCCEEE
T ss_pred CCceeEEEEecCcHHHHHHHHHHHH----cCCeeEEEEEEecCCCCc-Ccc-cCC---CHHH---HHHHHHhc-CCCceE
Confidence 3789999999999999988877655 34444 467777653210 000 000 0000 11111112 666544
Q ss_pred EEeeC--CCHHHHHHHHHHHhCCCEEEEecC
Q 028280 80 IVTEG--DQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 80 ~v~~G--~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
....+ ++-.+.+.+..++.+++-||-|.-
T Consensus 68 ~~~~~~~e~~~~~l~~~l~~~~v~~vv~Gdi 98 (226)
T d2d13a1 68 GFTKGEKEKEVEDLKNVLEGLKVDGIVAGAL 98 (226)
T ss_dssp EEC--CTTSHHHHHHHHHHTBCCSEEECCCS
T ss_pred EecCCcchHHHHHHHHHHHhcCccceEecce
Confidence 33332 236777888889999999998873
No 42
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=45.74 E-value=31 Score=21.76 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=28.7
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCC
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLN 44 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~ 44 (211)
||+|++-|..+|-.++.+.. +..+.++..+|+.....
T Consensus 2 KvlvA~SGG~DS~vll~lL~---e~~~~~vi~~~~~~~~~ 38 (165)
T d1j20a1 2 KIVLAYSGGLDTSIILKWLK---ETYRAEVIAFTADIGQG 38 (165)
T ss_dssp EEEEECCSSHHHHHHHHHHH---HHHTCEEEEEEEESSCS
T ss_pred EEEEEEeCHHHHHHHHHHHH---HcCCCEEEEEEeccCCh
Confidence 79999999999988877643 34578898998876543
No 43
>d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia coli [TaxId: 562]}
Probab=45.59 E-value=27 Score=26.43 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=27.0
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhcc---CCCEEEEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLR---FGDVVTLL 37 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~---~~a~l~ll 37 (211)
.++|+++.|+......|...++.++.. .|-.+.++
T Consensus 187 ~~~i~l~~D~D~AG~~A~~r~~~~~~~~~~~g~~v~v~ 224 (314)
T d1dd9a_ 187 TNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFM 224 (314)
T ss_dssp CSEEEEEEESSHHHHHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred CCceEEEeecCcchhhHHHhHHHHhhHHhcCCCeEEEE
Confidence 368999999999999999888887654 35555543
No 44
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}
Probab=45.14 E-value=51 Score=23.96 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=38.8
Q ss_pred CCcEEEEEeeCCCHHH--HHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGA--RIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~--~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+.+-.-+...+ ..+ ...+.|++.++|.+.+...-...... +-.--..|...+++|+++-..
T Consensus 72 ~~~vi~gv~~~s-~~~~i~~a~~a~~~Gad~ilv~pP~~~~~s~~~i~~~~~~v~~~~~~pi~iYn~ 137 (292)
T d1xkya1 72 RVPVIAGTGSNN-THASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNV 137 (292)
T ss_dssp SSCEEEECCCSC-HHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred CceEEEecCccc-HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHhccCCCcEEEEeC
Confidence 444444443333 544 45577888999999888653222211 333445788899999999754
No 45
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}
Probab=45.08 E-value=20 Score=24.45 Aligned_cols=50 Identities=16% Similarity=0.054 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCC--cccc-cccHHHHHHccCCceEEEEcCCC
Q 028280 88 GARIAALVREIGASALVVGLHDRS--FLHK-LAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~--~~~~-~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
.+.+++.+++.++|+||+..---. .... +-.. ...+...++|++.|+..-
T Consensus 21 le~~~~~~~~~~~D~vv~~GDl~~~~~~~~~~~~~-~~~L~~~~~pv~~i~GNH 73 (228)
T d1uf3a_ 21 LEKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAF-FRILSEAHLPTAYVPGPQ 73 (228)
T ss_dssp HHHHHTHHHHHTCSEEEEESCSSCTTCCHHHHHHH-HHHHGGGCSCEEEECCTT
T ss_pred HHHHHHHHhhcCCCEEEECCCCCCCCccchHHHHh-hhhhccccceEEEEecCC
Confidence 477777788888898888764221 1111 1111 245667788988887643
No 46
>d1xw8a_ c.6.2.5 (A:) Hypothetical protein YbgL {Escherichia coli [TaxId: 562]}
Probab=44.62 E-value=52 Score=24.02 Aligned_cols=116 Identities=9% Similarity=0.006 Sum_probs=69.7
Q ss_pred EEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc-----chHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 8 VIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR-----NRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 8 v~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
++..|--........++.+|++.|-.|-. |...+.... -....+.+..........|..++... |.++...--
T Consensus 28 IACG~HaGd~~~m~~tv~lA~~~~V~iGA-HPsypD~~gFGRr~~~~s~~el~~~v~~Qi~al~~~~~~~-g~~l~hvKp 105 (247)
T d1xw8a_ 28 IACGFHAGDAQIMQACVREAIKNGVAIGA-HPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQ-GGVMRHVKP 105 (247)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHHTCEEEE-ECCCC-------CCCCCCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEECC
T ss_pred HhcccccCCHHHHHHHHHHHHHcCCCccC-CCCCCchhccCcccCCCCHHHHHHHHHHHHHHHHHHHHHc-CCeeeeech
Confidence 34444334445566778888887766543 333221111 01122444444555556677777754 777666432
Q ss_pred e---------CCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEE
Q 028280 83 E---------GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLA 133 (211)
Q Consensus 83 ~---------G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLv 133 (211)
. ..+.+..|++.++..+.+|++++.. ||...++.++.+.+++-
T Consensus 106 HGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~~--------~s~~~~~A~~~Gl~~~~ 157 (247)
T d1xw8a_ 106 HGMLYNQAAKEAQLADAIARAVYACDPALILVGLA--------GSELIRAGKQYGLTTRE 157 (247)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEET--------TSHHHHHHHHTTCCEEE
T ss_pred hHHHHHHhcccHHHHHHHHHHHHHhCcchhhccCC--------CcHHHHHHHHcCCceee
Confidence 2 2236899999999999999999874 34445778888888874
No 47
>d1u6ka1 c.127.1.1 (A:2-283) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) {Archaeon Methanopyrus kandleri [TaxId: 2320]}
Probab=44.38 E-value=18 Score=26.61 Aligned_cols=45 Identities=7% Similarity=0.085 Sum_probs=33.3
Q ss_pred HHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCCC
Q 028280 92 AALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPA 138 (211)
Q Consensus 92 ~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~~ 138 (211)
....+++++|++|+.+.....-. .+-+..++..+.+|.+||....
T Consensus 56 ~~~~~~~~pDf~i~isPN~a~PG--P~~ARE~l~~~giP~ivI~D~p 100 (282)
T d1u6ka1 56 LDIAEDFEPDFIVYGGPNPAAPG--PSKAREMLADSEYPAVIIGDAP 100 (282)
T ss_dssp HHHHHHHCCSEEEEECSCTTSHH--HHHHHHHHHTSSSCEEEEEEGG
T ss_pred HHHHHhcCCCEEEEECCCCCCCC--cHHHHHHHHhcCCCEEEEcCCc
Confidence 34478999999999986544321 2357789999999999997543
No 48
>d1qzua_ c.34.1.1 (A:) 4'-phosphopantothenoylcysteine decarboxylase (PPC decarboxylase, halotolerance protein Hal3a) {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.91 E-value=9.2 Score=26.91 Aligned_cols=39 Identities=26% Similarity=0.108 Sum_probs=28.8
Q ss_pred CCCC-eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEE
Q 028280 1 MDVK-KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHV 39 (211)
Q Consensus 1 m~~k-~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV 39 (211)
|.-| +||+++-+|-.+-.+.....+|.+..|.++.++-.
T Consensus 1 m~~k~~Ill~vtGSIAayk~~~lv~~L~~~~g~~V~vi~T 40 (181)
T d1qzua_ 1 MERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVAVVTT 40 (181)
T ss_dssp CCSSEEEEEEECSSGGGGTHHHHHHHHC---CEEEEEEEC
T ss_pred CCCCCEEEEEEecHHHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 4444 79999999999999999888888878888765543
No 49
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=43.66 E-value=34 Score=21.41 Aligned_cols=48 Identities=6% Similarity=-0.128 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
..++ ++.+++..+|+|++...-.+.-. ..+...+-...++|++++-..
T Consensus 33 ~~ea-l~~l~~~~~dliilD~~mP~~~G--~e~~~~ir~~~~~piI~lt~~ 80 (119)
T d1zh2a1 33 LQRG-LLEAATRKPDLIILDLGLPDGDG--IEFIRDLRQWSAVPVIVLSAR 80 (119)
T ss_dssp HHHH-HHHHHHHCCSEEEEESEETTEEH--HHHHHHHHTTCCCCEEEEESC
T ss_pred HHHH-HHHHHhcCCCEEEeccccCCCCC--chHHHHHHhccCCcEEEEecc
Confidence 4444 45566789999999987654211 124455555667999888643
No 50
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]}
Probab=42.21 E-value=60 Score=24.71 Aligned_cols=57 Identities=12% Similarity=0.073 Sum_probs=36.6
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCC---CCcccc-ccc-HHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHD---RSFLHK-LAM-SHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~---~~~~~~-~gs-~a~~vl~~a~~PVLvV~~ 136 (211)
|+++.. +..+ ....+. ....+|++++|++. .+.+-. .|+ ...-+.++.++||+|+-+
T Consensus 204 gi~~t~--I~Ds-a~~~~m---~~~~vd~VivGad~v~~nG~v~nkiGT~~~A~~A~~~~vP~~V~a~ 265 (340)
T d1t9ka_ 204 GIEVYV--ITDN-MAGWLM---KRGLIDAVVVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAP 265 (340)
T ss_dssp TCEEEE--ECGG-GHHHHH---HTTCCSEEEECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECC
T ss_pred CCceEE--Eecc-hhhhhh---hhcccceEEecccccccCCCEEEcccHHHHHHHHHhcCCcEEEEee
Confidence 777643 3333 233332 34569999999985 344444 888 334677888999999864
No 51
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=41.18 E-value=54 Score=23.10 Aligned_cols=89 Identities=15% Similarity=-0.056 Sum_probs=49.8
Q ss_pred EEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCH
Q 028280 8 VIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQE 87 (211)
Q Consensus 8 v~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~ 87 (211)
|+.-|+...-.+...|..+. ..+.++.++..-.. .. ...++++.+++.. ++.+...-...+ +
T Consensus 18 vGptGvGKTTTiAKLA~~~~-~~g~kV~lit~Dt~-R~--------------ga~eQL~~~a~~l-~v~~~~~~~~~~-~ 79 (211)
T d1j8yf2 18 VGVQGTGKATTAGKLAYFYK-KKGFKVGLVGADVY-RP--------------AALEQLQQLGQQI-GVPVYGEPGEKD-V 79 (211)
T ss_dssp ECSCCC----HHHHHHHHHH-HTTCCEEEEECCCS-SH--------------HHHHHHHHHHHHH-TCCEECCTTCCC-H
T ss_pred ECCCCCCHHHHHHHHHHHHH-HCCCceEEEEeecc-cc--------------chhHHHHHhcccc-Ccceeecccchh-h
Confidence 56667777777777776665 45778766665432 11 0112344444433 666554323334 6
Q ss_pred HHHHHH---HHHHhCCCEEEEecCCCCccc
Q 028280 88 GARIAA---LVREIGASALVVGLHDRSFLH 114 (211)
Q Consensus 88 ~~~I~~---~a~~~~adLIVmG~~~~~~~~ 114 (211)
...+-+ .++..+.|+|++.+.|++...
T Consensus 80 ~~~~~~a~~~~~~~~~d~IlIDTaGr~~~~ 109 (211)
T d1j8yf2 80 VGIAKRGVEKFLSEKMEIIIVDTAGRHGYG 109 (211)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCSCCTT
T ss_pred hHHHHHHHHHhhccCCceEEEecCCcCccc
Confidence 655443 345678999999999987654
No 52
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]}
Probab=40.18 E-value=75 Score=24.44 Aligned_cols=59 Identities=12% Similarity=0.138 Sum_probs=38.1
Q ss_pred CCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCC---CCcccc-ccc-HHHHHHccCCceEEEEcCC
Q 028280 73 FNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHD---RSFLHK-LAM-SHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 73 ~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~---~~~~~~-~gs-~a~~vl~~a~~PVLvV~~~ 137 (211)
.|+++... .++. ... .....++|.|++|++. .+.+-. .|+ ...-+.++.++||+|+-+.
T Consensus 227 ~gi~~t~i-~Dsa--~~~---~m~~~~v~~VivGad~v~~nG~v~nkiGT~~~A~~A~~~~vP~~v~a~~ 290 (374)
T d2a0ua1 227 EDIPCTLI-CDGA--ASS---LMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPT 290 (374)
T ss_dssp TTCCEEEE-CGGG--HHH---HHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred ccCCcEEE-eccc--hhh---hhhccceeEEEecceEEEecCCEEeccchHHHHHHHHHcCCCEEEEecc
Confidence 37877643 2222 222 3344579999999986 344434 888 3345677888999998753
No 53
>d1xrsb1 c.23.6.1 (B:102-261) D-lysine 5,6-aminomutase beta subunit KamE, C-terminal domain {Clostridium sticklandii [TaxId: 1511]}
Probab=39.73 E-value=43 Score=22.56 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=26.9
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCC
Q 028280 77 VEIIVTEGDQEGARIAALVREIGASALVVGLHDR 110 (211)
Q Consensus 77 ~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~ 110 (211)
+++.-.-.+.+.+.+++.++++++|+|.|.+--.
T Consensus 57 ~eVi~LG~~vp~e~~v~~a~e~~~d~VglS~l~t 90 (160)
T d1xrsb1 57 IDAYNLGSQVANEDFIKKAVELEADVLLVSQTVT 90 (160)
T ss_dssp EEEEECCSSBCHHHHHHHHHHTTCSEEEEECCCC
T ss_pred eEEEeCCCCCCHHHHHHHHHhcCCCEEEEeeccc
Confidence 5665444445899999999999999999988643
No 54
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}
Probab=39.25 E-value=43 Score=24.43 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=26.0
Q ss_pred CCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEec
Q 028280 73 FNTNVEIIVTEGDQEGARIAALVREIGASALVVGL 107 (211)
Q Consensus 73 ~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~ 107 (211)
.|+++++.......-+..+++.+.+.++|.||++.
T Consensus 27 ~g~~~~v~~T~~~g~a~~~~~~~~~~~~d~Ivv~G 61 (295)
T d2bona1 27 EGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGG 61 (295)
T ss_dssp TTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCCEEEEEEcCCcchHHHHHHHHHhcCCCEEEEEC
Confidence 38888887755443577788887788899888764
No 55
>d1t6t1_ c.136.1.1 (1:) Hypothetical protein aq_2086 {Aquifex aeolicus [TaxId: 63363]}
Probab=38.18 E-value=20 Score=22.67 Aligned_cols=32 Identities=13% Similarity=0.017 Sum_probs=26.5
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVV 34 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l 34 (211)
+++|++.+|++...+.+...+..+....|-.+
T Consensus 58 ~~~vii~~D~D~aG~~aa~kl~~~L~~~g~~v 89 (108)
T d1t6t1_ 58 WEKVILLFDLDTHGERINQKMKELLSSQGFLV 89 (108)
T ss_dssp CSEEEECCCSSHHHHHHHHHHHHHHHHTTCEE
T ss_pred CCeEEEEeCCCHHHHHHHHHHHHHHHHcCCCC
Confidence 57899999999998888888888888777554
No 56
>d1sbpa_ c.94.1.1 (A:) Sulphate-binding protein {Salmonella typhimurium [TaxId: 90371]}
Probab=37.91 E-value=52 Score=23.90 Aligned_cols=65 Identities=22% Similarity=0.247 Sum_probs=36.9
Q ss_pred EEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 33 VVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 33 ~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
.+.||+|...... +.. +++...+.+...+..|+++++....|. -...+........+|+++.+..
T Consensus 2 ~~~~~~~~y~~~~------e~~----~ei~~af~~~~~~~tG~~V~v~~~~~g-sg~~~~~i~~g~~aDV~~~a~~ 66 (309)
T d1sbpa_ 2 DIQLLNVSYDPTR------ELY----EQYNKAFSAHWKQETGDNVVIDQSHGG-SGKQATSVINGIEADTVTLALA 66 (309)
T ss_dssp EEEEEEEECSTTH------HHH----HHHHHHHHHHHHHHHSCEEEEEEEESC-HHHHHHHHHTTCCCSEEEESSH
T ss_pred ccEEEEEeccchH------HHH----HHHHHHHHHHHHHhcCCCEEEEecCCc-hHHHHHHHHcCCCCCEEEeCCH
Confidence 4678888764221 222 223333433333334888888777777 4544445555557899998653
No 57
>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=37.30 E-value=34 Score=22.22 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=29.0
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~ 43 (211)
++|+|++.|.-+|-.++.++ +..|..+..+|+.-..
T Consensus 11 kKv~vA~SGGvDSsvll~lL----~~~g~~v~~~~~~~~~ 46 (188)
T d1k92a1 11 QRIGIAFSGGLDTSAALLWM----RQKGAVPYAYTANLGQ 46 (188)
T ss_dssp SEEEEECCSSHHHHHHHHHH----HHTTCEEEEEEEECCC
T ss_pred CEEEEEeCCCHHHHHHHHHH----HHcCCcCeEEeeecCC
Confidence 69999999999988877654 4568899999987653
No 58
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=37.28 E-value=25 Score=24.67 Aligned_cols=36 Identities=25% Similarity=0.185 Sum_probs=29.5
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
||+++|.+-|.-+|..++.++.+ .|.+++.||+...
T Consensus 1 mkK~Vvl~SGGlDS~v~a~~l~~----~g~~v~~v~~~yg 36 (230)
T d2pg3a1 1 MKRAVVVFSGGQDSTTCLIQALQ----DYDDVHCITFDYG 36 (230)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHH----HCSEEEEEEEESS
T ss_pred CCeEEEEcCCcHHHHHHHHHHHH----cCCeEEEEEEECC
Confidence 79999999999999777776664 4689999999754
No 59
>d1p5dx1 c.84.1.1 (X:9-154) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=37.15 E-value=19 Score=23.92 Aligned_cols=40 Identities=15% Similarity=0.098 Sum_probs=34.6
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
-++|+|+-|....++...++.+.-....|.++..+.+.+.
T Consensus 40 ~~~VvIg~D~R~ss~~~~~~~~~gl~~~G~~V~~~g~~pT 79 (146)
T d1p5dx1 40 EPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPT 79 (146)
T ss_dssp CCEEEEEECSCTTHHHHHHHHHHHHHTBTCEEEEEEECCH
T ss_pred CCEEEEEECCccchhhhhhhhheeeccCceEEEecccccc
Confidence 3579999999999999988888888889999988888754
No 60
>d2hy5b1 c.114.1.1 (B:205-336) Intracellular sulfur oxidation protein DsrF {Chromatium vinosum [TaxId: 1049]}
Probab=36.91 E-value=33 Score=22.18 Aligned_cols=39 Identities=26% Similarity=0.196 Sum_probs=29.7
Q ss_pred CCeEEEEecCCH----HHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 3 VKKIVVIVEDVD----AARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 3 ~k~ILv~vD~s~----~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
||++++.+..+| .+..|+..|...+. ++-++.++-..+.
T Consensus 1 Mkk~l~ii~~aPy~s~~a~~al~~A~aa~~-~~~~v~vff~~dG 43 (132)
T d2hy5b1 1 VKKFMYLNRKAPYGTIYAWEALEVVLIGAA-FDQDVCVLFLDDG 43 (132)
T ss_dssp CCEEEEEECSCTTTSSHHHHHHHHHHHHGG-GCCEEEEEECGGG
T ss_pred CcEEEEEecCCCCCcHHHHHHHHHHHHHHc-CCCCEEEEEechH
Confidence 799999998665 57888998887665 5777887776654
No 61
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=36.36 E-value=55 Score=24.16 Aligned_cols=99 Identities=9% Similarity=-0.105 Sum_probs=52.0
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHH---HHHHHHHHHHHHHHHHHHhhhCCCcEEEEE
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKL---RLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v 81 (211)
.+++.+..+.+.+.-++ ++..+...++...-+++..+......... ....+...++.+.+++ .-.+.+-.++
T Consensus 104 ~~~~~~~~~~~~~d~~~-~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~----~~~~pv~vKl 178 (312)
T d1gtea2 104 IVIASIMCSYNKNDWME-LSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQ----AVQIPFFAKL 178 (312)
T ss_dssp EEEEEECCCSCHHHHHH-HHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHH----HCSSCEEEEE
T ss_pred ccccccccccchhHHHH-HHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHHhh----ccCCceeecc
Confidence 34444444333333333 33445567889999998876532211100 0001112222222222 2356677766
Q ss_pred eeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 82 TEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 82 ~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
..+.+-...|++.+++.++|.|++..+
T Consensus 179 ~~~~~~~~~i~~~~~~~g~~gi~~~n~ 205 (312)
T d1gtea2 179 TPNVTDIVSIARAAKEGGADGVTATNT 205 (312)
T ss_dssp CSCSSCHHHHHHHHHHHTCSEEEECCC
T ss_pred cccchhHHHHHHHHHHhcccceEEEee
Confidence 654434678899999999999988654
No 62
>d1iiba_ c.44.2.1 (A:) Enzyme IIB-cellobiose {Escherichia coli [TaxId: 562]}
Probab=36.22 E-value=45 Score=20.68 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=34.1
Q ss_pred HHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 64 SFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 64 ~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+++.+++. ++++++.-..-....+ .. .++|+|++|.+-+..... .+..+. +.||.+|.+
T Consensus 20 km~~~a~~~-~~~~~i~A~~~~~~~~----~~--~~~DviLl~PQv~~~~~~----i~~~~~--~~pv~vI~~ 79 (103)
T d1iiba_ 20 KMRAQAEKY-EVPVIIEAFPETLAGE----KG--QNADVVLLGPQIAYMLPE----IQRLLP--NKPVEVIDS 79 (103)
T ss_dssp HHHHHHHHT-TCCEEEEEEEGGGHHH----HH--TTCSEEEECGGGGGGHHH----HHHHCT--TSCEEECCH
T ss_pred HHHHHHHHc-CCCEEEEEechHHHhh----hc--cCCCEEEECHHHHHHHHH----HHHHcC--CCCEEEeCh
Confidence 344555543 7777776433221322 33 368999999986644331 112222 579999865
No 63
>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}
Probab=34.90 E-value=48 Score=20.64 Aligned_cols=47 Identities=4% Similarity=-0.060 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHH---ccCCceEEEEcCC
Q 028280 89 ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDIS---SSFNCRVLAIKQP 137 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl---~~a~~PVLvV~~~ 137 (211)
++..+.+++..+|+|++...-.+.-. + .+.+.+- ....+||+++-..
T Consensus 34 ~~al~~l~~~~~dlil~D~~mp~~~G-~-~l~~~lr~~~~~~~~pvi~lt~~ 83 (121)
T d1zesa1 34 DSAVNQLNEPWPDLILLDWMLPGGSG-I-QFIKHLKRESMTRDIPVVMLTAR 83 (121)
T ss_dssp HHHHHHSSSSCCSEEEECSSCTTSCH-H-HHHHHHHHSTTTTTSCEEEEESC
T ss_pred HHHHHHHHccCCCEEEeecCCCCCCH-H-HHHHHHHhCccCCCCeEEEEECC
Confidence 44455556789999999987554221 0 1333332 2245999998754
No 64
>d1v6ta_ c.6.2.5 (A:) Hypothetical protein PH0986 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=34.66 E-value=73 Score=23.26 Aligned_cols=116 Identities=8% Similarity=-0.076 Sum_probs=71.5
Q ss_pred EEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc-----chHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 8 VIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR-----NRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 8 v~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
++..|--........++.+|+.+|-.|-. |...+.... .....+.+.+........+..++... |.++...=-
T Consensus 33 IACG~HAGD~~~m~~tv~lA~~~~V~IGA-HPsypD~~gFGRr~~~~s~~el~~~i~~Qi~al~~~a~~~-g~~l~hVKp 110 (254)
T d1v6ta_ 33 VACGWHAGDPLVMRKTVRLAKENDVQVGA-HPGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKAE-GLELQHVKP 110 (254)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHTTCEEEE-ECCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHT-TCCEEEECC
T ss_pred HhcCcccCCHHHHHHHHHHHHHcCCCccC-CCCCcCccccCcccccCCHHHHHHHHHHHHHHHHHHHHHc-CCeeEEEee
Confidence 44444444455677788888888876543 333222111 01122444444555556677777753 777666432
Q ss_pred e---------CCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEE
Q 028280 83 E---------GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLA 133 (211)
Q Consensus 83 ~---------G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLv 133 (211)
. ..+.+..|++.++..+.+|++++.. ||...+.....+.+++-
T Consensus 111 HGALYN~a~~D~~lA~ai~~ai~~~~~~l~l~~~~--------~s~~~~~A~~~Gl~~~~ 162 (254)
T d1v6ta_ 111 HGALYNAMVKEEDLARAVIEGILDFDKDLILVTLS--------NSRVADIAEEMGLKVAH 162 (254)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEET--------TCHHHHHHHHHTCCEEE
T ss_pred hHHHHHHHhcCHHHHHHHHHHHHHhCcCccEeecC--------CcHHHHHHHHhCCceee
Confidence 2 2336789999999999999999874 34445677888888764
No 65
>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=34.24 E-value=68 Score=22.21 Aligned_cols=33 Identities=6% Similarity=0.163 Sum_probs=19.9
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEe
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVF 40 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~ 40 (211)
|++|.|+.|.... ..+++.+ ...+..+..+-+.
T Consensus 2 ~~ki~lAlD~~~~-~~a~~l~----~~~~~~v~~iKig 34 (212)
T d1km4a_ 2 MNRLILAMDLMNR-DDALRVT----GEVREYIDTVKIG 34 (212)
T ss_dssp GGGEEEEECCSSH-HHHHHHH----HHHTTTCSEEEEE
T ss_pred CCCeEEEecCCCH-HHHHHHH----HHhCCCCcEEEEC
Confidence 6779999999763 3444444 4444444455554
No 66
>d2d1pb1 c.114.1.1 (B:1-119) tRNA 2-thiouridine synthesizing protein C, TusC {Escherichia coli [TaxId: 562]}
Probab=33.97 E-value=31 Score=21.69 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=29.8
Q ss_pred CCeEEEEecCC----HHHHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 3 VKKIVVIVEDV----DAARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 3 ~k~ILv~vD~s----~~s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
||++++.+..+ ..+..++..|+..+. .+.++.++-..+.
T Consensus 1 Mkkv~ii~~~~P~~~~~~~~al~~Ala~a~-~~~~V~iff~~dG 43 (119)
T d2d1pb1 1 MKRIAFVFSTAPHGTAAGREGLDALLATSA-LTDDLAVFFIADG 43 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHT-TCSCEEEEECGGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHh-CCCCEEEEEechH
Confidence 68888888754 458889998887765 7788888877654
No 67
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}
Probab=33.91 E-value=23 Score=25.51 Aligned_cols=30 Identities=20% Similarity=0.028 Sum_probs=21.7
Q ss_pred ecCCHHHHHHHHHHHHhhccCCCEEEEEEE
Q 028280 10 VEDVDAARAALLWALQNLLRFGDVVTLLHV 39 (211)
Q Consensus 10 vD~s~~s~~al~~A~~la~~~~a~l~llhV 39 (211)
--++..+.-+++.|...+...|.++..+..
T Consensus 43 ~~G~GKT~~~~~la~~~a~~~g~~v~~~s~ 72 (277)
T d1cr2a_ 43 GSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (277)
T ss_dssp STTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence 335666888889988888877877665543
No 68
>d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}
Probab=33.71 E-value=15 Score=24.45 Aligned_cols=51 Identities=12% Similarity=0.204 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCC-Ccccc-----cccHHHHHHccCCceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDR-SFLHK-----LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~-~~~~~-----~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
....|.+.+++++++.||+|-.-. ++... .-..+..+....++||..+-..
T Consensus 42 ~~~~l~~ii~e~~i~~iViGlP~~~dg~~~~~~~~~~~f~~~l~~~~~i~V~~~DEr 98 (140)
T d1vhxa_ 42 GLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDER 98 (140)
T ss_dssp CHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECCS
T ss_pred HHHHHHHHHHhhccceEEEecccccCCcchhHHHHHHHHHHHhccCCCccEEEeecc
Confidence 368999999999999999997532 12111 2235566777779999999654
No 69
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]}
Probab=33.19 E-value=39 Score=25.86 Aligned_cols=78 Identities=6% Similarity=-0.017 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
..+++.+.+|.++|++...+|+++|=... .... + -..+.+.+..+++|++.++....+. ....++.
T Consensus 160 ~~~~Ri~r~Afe~A~~~~k~vt~v~KaNv---~~~~--~-------~~~~~~~~va~~yp~i~~~~~~vD~--~~~~lv~ 225 (345)
T d1g2ua_ 160 PEVERVARVAFEVARKRRKHVVSVDKANV---LEVG--E-------FWRKTVEEVGRGYPDVALEHQYVDA--MAMHLVR 225 (345)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTT---CHHH--H-------HHHHHHHHHHTTCTTSEEEEEEHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCceeeccCCCc---cccc--c-------hhhHHHHHHHhhCCCceeehHHHHH--HHHHHHh
Confidence 34789999999999988888777664432 2111 1 1233455666678899888765432 3333333
Q ss_pred HHHHhCCCEEEEec
Q 028280 94 LVREIGASALVVGL 107 (211)
Q Consensus 94 ~a~~~~adLIVmG~ 107 (211)
- -.+.|.||+..
T Consensus 226 ~--P~~fdViv~~N 237 (345)
T d1g2ua_ 226 S--PARFDVVVTGN 237 (345)
T ss_dssp C--GGGCSEEEECH
T ss_pred c--ccccceeeccH
Confidence 2 24578888763
No 70
>d2dbsa1 d.374.1.1 (A:7-86) Hypothetical protein TTHC002 {Thermus thermophilus [TaxId: 274]}
Probab=33.08 E-value=14 Score=21.26 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=24.4
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCC
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGD 32 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a 32 (211)
|+-+++|.|..+-+..|+.||..--.-.|-
T Consensus 26 yrlv~lpldepeva~kal~wa~eapnpegw 55 (80)
T d2dbsa1 26 YRLVLLPLDEPEVAAQALAWAMEAPNPEGW 55 (80)
T ss_dssp CEEEEEETTCHHHHHHHHHHHHSCCCSSSS
T ss_pred heeeecCCCCHHHHHHHHHHHHhCCCCccc
Confidence 677899999999999999999875554443
No 71
>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}
Probab=32.53 E-value=31 Score=24.54 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=21.1
Q ss_pred eeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 82 TEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 82 ~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
++|. +-..-+..+.+.++|.+|+|+.
T Consensus 175 VDGG-In~~~i~~l~~aGad~iV~GS~ 200 (221)
T d1tqxa_ 175 VDGG-LNIETTEISASHGANIIVAGTS 200 (221)
T ss_dssp EESS-CCHHHHHHHHHHTCCEEEESHH
T ss_pred EEcc-cCHHhHHHHHHcCCCEEEEChH
Confidence 5788 7766777777889999999973
No 72
>d2dfaa1 c.6.2.5 (A:1-250) Hypothetical protein TTHB195 {Thermus thermophilus [TaxId: 274]}
Probab=32.36 E-value=60 Score=23.65 Aligned_cols=116 Identities=10% Similarity=-0.049 Sum_probs=69.7
Q ss_pred EEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCcc-----chHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEe
Q 028280 8 VIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSR-----NRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVT 82 (211)
Q Consensus 8 v~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~ 82 (211)
|+..+--........++.+|+++|-.|-. |...+.... -....+.+..........+..+++.. |.++...=-
T Consensus 33 IACG~HaGD~~~m~~tv~lA~~~~V~IGA-HPsypD~~gFGRr~~~~s~~el~~~i~~Qi~al~~~a~~~-g~~l~hVKp 110 (250)
T d2dfaa1 33 LACGFHGGSPGRILEAVRLAKAHGVAVGA-HPGFPDLVGFGRREMALSPEEVYADVLYQIGALSAFLKAE-GLPLHHVKP 110 (250)
T ss_dssp EECSSSSCCHHHHHHHHHHHHHTTCEEEE-ECCCSCTTTTTCSCCCCCHHHHHHHHHHHHHHHHHHHHHT-TCCCCCBCC
T ss_pred HhcCcccCCHHHHHHHHHHHHHcCCcccc-CCCCcchhhcCCCcCCCCHHHHHHHHHHHHHHHHHHHHHc-CCceeeech
Confidence 44444444455677788888888776543 433332111 01122334444444455677777653 555443211
Q ss_pred e---------CCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEE
Q 028280 83 E---------GDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLA 133 (211)
Q Consensus 83 ~---------G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLv 133 (211)
. ..+.+..|++.++..+.+|++++.. ||...++.++.+++++-
T Consensus 111 HGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~~--------~s~~~~~a~~~Gl~~~~ 162 (250)
T d2dfaa1 111 HGALYLKACRDRETARAIALAVKAFDPGLPLVVLP--------GTVYEEEARKAGLRVVL 162 (250)
T ss_dssp CHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEEECT--------TSHHHHHHHHTTCCEEE
T ss_pred hHHHhhhhhcCHHHHHHHHHHHHhhCCCceEEecC--------chhHHHHHhhcCCceee
Confidence 1 2237899999999999999999864 34445788888888864
No 73
>d1coza_ c.26.1.2 (A:) CTP:glycerol-3-phosphate cytidylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=32.20 E-value=22 Score=22.74 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=27.5
Q ss_pred EeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 81 VTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 81 v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+...+ +.+...+...+.++|.+|+|..-.+... ..+..+.++.++.
T Consensus 68 v~~~~-~~~~~~~~i~~~~~d~~v~G~D~~~~~~---------~~~~~~~~i~~~~ 113 (126)
T d1coza_ 68 VIPEK-NWEQKKQDIIDHNIDVFVMGDDWEGKFD---------FLKDQCEVVYLPR 113 (126)
T ss_dssp EEEEC-CSTTHHHHHHHTTCSEEEEEGGGTTTTG---------GGTTTSEEEEECC
T ss_pred eeecc-cccccHhhhhccCCCEeeeccccccchH---------HHHcCCEEEEECC
Confidence 33334 4455666667889999999964332211 2234677777754
No 74
>d1g5qa_ c.34.1.1 (A:) Epidermin modifying enzyme (peptidyl-cysteine decarboxylase) EpiD {Staphylococcus epidermidis [TaxId: 1282]}
Probab=32.10 E-value=16 Score=25.34 Aligned_cols=109 Identities=10% Similarity=0.006 Sum_probs=62.9
Q ss_pred CCCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEE
Q 028280 2 DVKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIV 81 (211)
Q Consensus 2 ~~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v 81 (211)
|..|||+++-+|-.+..+.+....|-+ .|.++.++-.-.......... ++.+ .+. +
T Consensus 1 m~~kIll~vtGsiaa~k~~~li~~L~~-~g~~V~vv~T~sA~~fv~~~~--------------l~~~----~~~-----~ 56 (174)
T d1g5qa_ 1 MYGKLLICATASINVININHYIVELKQ-HFDEVNILFSPSSKNFINTDV--------------LKLF----CDN-----L 56 (174)
T ss_dssp CBSCEEEEECSCGGGGGHHHHHHHHTT-TBSCEEEEECGGGGGTSCGGG--------------GGGT----SSC-----E
T ss_pred CCCeEEEEEECHHHHHHHHHHHHHHHH-CCCeEEEEEehhhhhhccHhH--------------HhHh----hCc-----c
Confidence 567899999999999999888666544 677766543322111111110 1111 111 1
Q ss_pred eeC-CCHHHHHHHHHHHhCCCEEEEecCCCCcccc----ccc-HHHHHHccCCceEEEEcC
Q 028280 82 TEG-DQEGARIAALVREIGASALVVGLHDRSFLHK----LAM-SHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 82 ~~G-~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~----~gs-~a~~vl~~a~~PVLvV~~ 136 (211)
... .++...=++.++ .+|++|+-.-..+.+.+ +.. ....++....+|+++++.
T Consensus 57 ~~~~~~~~~~hi~l~~--~aD~~lVaPaTaNtlaKiA~GiaDnllt~~~la~~~piiiaPa 115 (174)
T d1g5qa_ 57 YDEIKDPLLNNINIVE--NHEYILVLPASANTINKIANGICDNLLTTVCLTGYQKLFIFPN 115 (174)
T ss_dssp ECTTTCTTCCHHHHHH--TCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHHTGGGEEEEEC
T ss_pred ccccccccccceeecc--ccceEEEEecCHHHHHHHHHhhcccchhheeecccccEEEEec
Confidence 111 111111134443 58999998877776665 222 555667778899999974
No 75
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=30.70 E-value=24 Score=25.50 Aligned_cols=41 Identities=37% Similarity=0.470 Sum_probs=26.4
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
+.++..+. +.++.+. ++|. +-..-+..+.+.++|.+|+|+.
T Consensus 169 ~~~~~~~~-~~~~~I~-vDGG-In~~~i~~l~~~Gad~~V~GS~ 209 (230)
T d1rpxa_ 169 LRKICAER-GLNPWIE-VDGG-VGPKNAYKVIEAGANALVAGSA 209 (230)
T ss_dssp HHHHHHHH-TCCCEEE-EESS-CCTTTHHHHHHHTCCEEEESHH
T ss_pred HHHHHHhc-CCceEEE-EECC-cCHHHHHHHHHcCCCEEEEChH
Confidence 44444442 4445543 5777 6655666666789999999963
No 76
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}
Probab=30.49 E-value=78 Score=21.75 Aligned_cols=85 Identities=11% Similarity=0.083 Sum_probs=54.6
Q ss_pred HHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhC
Q 028280 20 LLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIG 99 (211)
Q Consensus 20 l~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~ 99 (211)
+-.|+..|++.+.++-++.-..... . +..+++-+ ++++........+-.+..+..+++.+
T Consensus 83 il~al~~a~~~~~kiavV~~~~~~~----~---------------~~~~~~ll-~~~i~~~~~~~~~e~~~~v~~l~~~G 142 (186)
T d2pjua1 83 VLQFLAKAGKLTSSIGVVTYQETIP----A---------------LVAFQKTF-NLRLDQRSYITEEDARGQINELKANG 142 (186)
T ss_dssp HHHHHHHTTCTTSCEEEEEESSCCH----H---------------HHHHHHHH-TCCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCEEEEeCCccch----H---------------HHHHHHHh-CCceEEEEecCHHHHHHHHHHHHHCC
Confidence 3457778888888877775433211 1 22222223 66777766654446777888888999
Q ss_pred CCEEEEecCCCCcccccccHHHHHHccCCceEEEEc
Q 028280 100 ASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 100 adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~ 135 (211)
++.||=|. ++..+.++.++|-+++-
T Consensus 143 ~~vVVG~~-----------~~~~~A~~~Gl~~vli~ 167 (186)
T d2pjua1 143 TEAVVGAG-----------LITDLAEEAGMTGIFIY 167 (186)
T ss_dssp CCEEEESH-----------HHHHHHHHTTSEEEESS
T ss_pred CCEEECCh-----------HHHHHHHHcCCCEEEEe
Confidence 99886443 34577788888877764
No 77
>d1sbza_ c.34.1.1 (A:) Probable aromatic acid decarboxylase Pad1 {Escherichia coli O157:H7 [TaxId: 83334]}
Probab=30.44 E-value=32 Score=23.78 Aligned_cols=33 Identities=12% Similarity=-0.043 Sum_probs=25.2
Q ss_pred eEEEEecCCHHHHHHHHHHHHhhccCCCEEEEE
Q 028280 5 KIVVIVEDVDAARAALLWALQNLLRFGDVVTLL 37 (211)
Q Consensus 5 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll 37 (211)
||++++-|+..+..+++....|.+..|.++.++
T Consensus 2 rIllgITGas~a~~a~~ll~~L~~~~g~~V~vv 34 (186)
T d1sbza_ 2 KLIVGMTGATGAPLGVALLQALREMPNVETHLV 34 (186)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHTCTTCEEEEE
T ss_pred EEEEEEccHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 599999997767778777666776667887654
No 78
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}
Probab=30.43 E-value=74 Score=23.06 Aligned_cols=62 Identities=8% Similarity=-0.046 Sum_probs=38.0
Q ss_pred CCcEEEEEeeCCCHHHHH--HHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARI--AALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
.+.+-.-+...+ ..++| .+.|++.++|.+++...-...... +-.--+.|...+++|+++-..
T Consensus 70 ~~~vi~g~~~~s-~~~~i~~~~~a~~~Gad~~~~~pP~~~~~~~~~i~~~f~~v~~~~~~pi~iYn~ 135 (292)
T d2a6na1 70 RIPVIAGTGANA-TAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNV 135 (292)
T ss_dssp SSCEEEECCCSS-HHHHHHHHHTTTTSSCCEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred cceeEeecccch-HHHHHHHhccHHhcCCcceeccCCCCCCCCHHHHHHHHHHHhhccCCcEEEEEe
Confidence 455444433333 54443 356667799999888754332222 334555788889999998764
No 79
>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=30.28 E-value=47 Score=21.94 Aligned_cols=41 Identities=12% Similarity=0.014 Sum_probs=31.6
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCC
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSL 43 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~ 43 (211)
+++|+|++.|.++|-..|..+.......+..+.++++....
T Consensus 26 ~d~i~va~SGGKDS~vlL~L~~~~~~~~~~~~~~v~~d~~~ 66 (211)
T d1zuna1 26 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRW 66 (211)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSC
T ss_pred cCCEEEEeCCcHHHHHHHHHHHhhcccccCCeeEEEecCcc
Confidence 57899999999999988887777766666666677776543
No 80
>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=29.33 E-value=22 Score=25.47 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=21.6
Q ss_pred eeCCCHHHHHHHHHHHhCCCEEEEecC
Q 028280 82 TEGDQEGARIAALVREIGASALVVGLH 108 (211)
Q Consensus 82 ~~G~~~~~~I~~~a~~~~adLIVmG~~ 108 (211)
++|- +..+-+..+.+.++|.+|+|+.
T Consensus 173 VDGG-In~~~i~~l~~aGad~~V~GS~ 198 (220)
T d1h1ya_ 173 VDGG-LGPSTIDVAASAGANCIVAGSS 198 (220)
T ss_dssp EESS-CSTTTHHHHHHHTCCEEEESHH
T ss_pred EEec-CCHHHHHHHHHCCCCEEEECHH
Confidence 5787 7777777778899999999973
No 81
>d2vgba3 c.49.1.1 (A:440-573) Pyruvate kinase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.18 E-value=67 Score=20.58 Aligned_cols=44 Identities=16% Similarity=0.070 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCC-ceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFN-CRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~-~PVLvV~~~ 137 (211)
++...++.|.+.++..||+-+. -|.++..+.+.=| ||++.+-+.
T Consensus 16 ia~sav~~A~~l~a~aIvv~T~-------sG~tar~vSk~RP~~pI~a~t~~ 60 (134)
T d2vgba3 16 TAIGAVEAAFKCCAAAIIVLTT-------TGRSAQLLSRYRPRAAVIAVTRS 60 (134)
T ss_dssp HHHHHHHHHHHHTCSEEEEECS-------SSHHHHHHHTTCCSSEEEEEESC
T ss_pred HHHHHHHHHHhCCCCEEEEEcC-------CcHHHHHHHhhcCCCCeeeeeCC
Confidence 4455567888899999988763 3555666666554 999998753
No 82
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli [TaxId: 562]}
Probab=29.08 E-value=25 Score=25.51 Aligned_cols=30 Identities=33% Similarity=0.449 Sum_probs=23.3
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHV 39 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV 39 (211)
.++|++++|.+.+ .++.|...|+.+.+.|=
T Consensus 35 V~kI~v~lD~t~~-------vi~~A~~~g~dlIItHH 64 (247)
T d1nmpa_ 35 VQKIVTGVTASQA-------LLDEAVRLGADAVIVHH 64 (247)
T ss_dssp CCEEEEEEECCHH-------HHHHHHHTTCSEEEEEE
T ss_pred cCEEEEEEcCCHH-------HHHHHHHCCCCEEEECC
Confidence 6899999999984 45556667888888875
No 83
>d1pkla3 c.49.1.1 (A:358-498) Pyruvate kinase, C-terminal domain {Leishmania mexicana [TaxId: 5665]}
Probab=28.75 E-value=52 Score=21.45 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCC-ceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFN-CRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~-~PVLvV~~~ 137 (211)
++.+.+..|.+.++..||+=++ -|.++..+.+.=| ||++.+-+.
T Consensus 23 ia~sAv~~A~~l~akaIvv~T~-------sG~tar~iSk~RP~~pI~a~t~~ 67 (141)
T d1pkla3 23 VCSSAVNSVYETKAKAMVVLSN-------TGRSARLVAKYRPNCPIVCVTTR 67 (141)
T ss_dssp HHHHHHHHHHHHTCSCEEEECS-------SSHHHHHHHHTCCSSCEEEEESC
T ss_pred HHHHHHHHHHHcCCCEEEEECC-------CcHHHHHHHhhcCCCCeeeecCC
Confidence 6677778888899999888663 3556666666554 999998754
No 84
>d2at2a1 c.78.1.1 (A:1-144) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}
Probab=28.71 E-value=72 Score=20.82 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=19.9
Q ss_pred CCeEEEEecCCHH-HHHHHHHHHHhhcc
Q 028280 3 VKKIVVIVEDVDA-ARAALLWALQNLLR 29 (211)
Q Consensus 3 ~k~ILv~vD~s~~-s~~al~~A~~la~~ 29 (211)
||+++-.-|++.. -...++.|.++-..
T Consensus 1 Mkh~l~i~dls~~el~~il~~A~~lk~~ 28 (144)
T d2at2a1 1 MKHLTTMSELSTEEIKDLLQTAQELKSG 28 (144)
T ss_pred CcCcCChhcCCHHHHHHHHHHHHHHHcC
Confidence 5778888888865 57778888776543
No 85
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=28.56 E-value=98 Score=22.27 Aligned_cols=63 Identities=13% Similarity=0.108 Sum_probs=39.7
Q ss_pred CCcEEEEEeeCCCHHH--HHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcCC
Q 028280 74 NTNVEIIVTEGDQEGA--RIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~--~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~~ 137 (211)
++.+-.-+...+ ..+ .+.+.|++.++|.+++...-...... +-.--+.|...++.|+++-..+
T Consensus 70 ~~~vi~gv~~~s-t~~ai~~a~~A~~~Gad~v~v~pP~y~~~s~~~i~~~~~~ia~a~~~pi~iYn~P 136 (295)
T d1o5ka_ 70 KIPVIVGAGTNS-TEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVP 136 (295)
T ss_dssp SSCEEEECCCSC-HHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECH
T ss_pred CCceEeeccccc-HHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhccCCCeeEEecc
Confidence 455544444444 443 45688889999998887653322222 3344557888899999997643
No 86
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=28.42 E-value=36 Score=22.89 Aligned_cols=57 Identities=12% Similarity=-0.008 Sum_probs=37.4
Q ss_pred EEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCC--ceEEEE
Q 028280 77 VEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFN--CRVLAI 134 (211)
Q Consensus 77 ~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~--~PVLvV 134 (211)
+++.-.--+.+.+.+++.+++.++|+|.+.+.-.+.+..+-.+. ..++... +||++-
T Consensus 35 ~~Vi~LG~~~p~e~~~~~~~~~~~d~i~lS~l~~~~~~~~~~~~-~~l~~~g~~~~vivG 93 (156)
T d3bula2 35 YEIVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVA-KEMERQGFTIPLLIG 93 (156)
T ss_dssp CEEEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHH-HHHHHTTCCSCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhCCCEEEEecccccchHHHHHHH-HHHHhccccceEEEe
Confidence 44443444448999999999999999999987554443333343 3444443 566655
No 87
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.40 E-value=32 Score=23.08 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHcc---CCceEEEEcC
Q 028280 88 GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSS---FNCRVLAIKQ 136 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~---a~~PVLvV~~ 136 (211)
.+.+.++++++++++|++|....+ .++-.....++.. .++++.+|..
T Consensus 48 ~~~l~~li~k~~p~vIaIGNgTas--re~~~~v~~l~~~~~~~~i~~~iV~e 97 (149)
T d3bzka5 48 LAVLAALCAKHQVELIAIGNGTAS--RETDKLAGELIKKYPGMKLTKIMVSE 97 (149)
T ss_dssp HHHHHHHHHHTTCCEEEEESSTTH--HHHHHHHHHHHHHCGGGCCEEEEECC
T ss_pred HHHHHHHHHHcCCeEEEECCCccH--HHHHHHHHHHHHhCCCCCcEEEEEec
Confidence 345778888999999999854322 1133323333433 4688888865
No 88
>g1w2w.1 c.124.1.5 (A:,B:) Putative methylthioribose-1-phosphate isomerase Ypr118W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.40 E-value=1.2e+02 Score=23.39 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=35.5
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCC---CCcccc-ccc-HHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHD---RSFLHK-LAM-SHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~---~~~~~~-~gs-~a~~vl~~a~~PVLvV~~ 136 (211)
|++++. +..+ ....+.... ..++|.+++|++. .+.+.. .|+ ...-+.++.++||+|+-+
T Consensus 241 gI~~t~--i~ds-a~~~~m~~~-~~~vd~V~vGAd~i~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~ 304 (402)
T g1w2w.1 241 KIPSTL--ITDS-SIAYRIRTS-PIPIKAAFVGADRIVRNGDTANKIGTLQLAVICKQFGIKFFVVAP 304 (402)
T ss_dssp TCCBEE--BCGG-GHHHHHHHC-SSCEEEEEECCSEECTTSCEEEETTHHHHHHHHHHHTCEEEEECC
T ss_pred CCCeEE--Eech-hHHHHHhhc-CcccceEEEccceeccCCCEeehHHHHHHHHHHHHcCCceEEEec
Confidence 777754 3333 233333221 1246889999986 333444 888 333566777899999865
No 89
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=28.30 E-value=63 Score=19.99 Aligned_cols=63 Identities=10% Similarity=0.113 Sum_probs=34.4
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCccccccc-HHHHHH---ccCCceEEEEcC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAM-SHNDIS---SSFNCRVLAIKQ 136 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs-~a~~vl---~~a~~PVLvV~~ 136 (211)
+...++.. |.++.. ..+ ..++ ++.+++..+|+|++.-.-.+.- |- +...+- ....+||+++-.
T Consensus 17 l~~~L~~~-g~~v~~---a~~-~~~a-l~~~~~~~~dlil~D~~mp~~d---G~el~~~ir~~~~~~~iPii~lt~ 83 (123)
T d1mb3a_ 17 FHDLLEAQ-GYETLQ---TRE-GLSA-LSIARENKPDLILMDIQLPEIS---GLEVTKWLKEDDDLAHIPVVAVTA 83 (123)
T ss_dssp HHHHHHHT-TCEEEE---ESC-HHHH-HHHHHHHCCSEEEEESBCSSSB---HHHHHHHHHHSTTTTTSCEEEEC-
T ss_pred HHHHHHHC-CCEEEE---ECC-HHHH-HHHHHhCCCCEEEEEeccCCCc---HHHHHHHHHhCCCcCCCCeEEEEE
Confidence 44444432 554432 234 4444 4566778999999998755321 11 233332 224589998864
No 90
>d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]}
Probab=27.85 E-value=27 Score=24.30 Aligned_cols=107 Identities=12% Similarity=0.117 Sum_probs=58.9
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEee
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTE 83 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~ 83 (211)
|+||+++-||-.+-.+..+. ...+..|.++.++-.- ...+... .+.++.++ + . .+.+
T Consensus 7 KkIllgvTGsiaa~k~~~l~-~~L~~~g~eV~vv~T~--------~A~~fi~------~~~~~~l~----~---~-~~~~ 63 (183)
T d1p3y1_ 7 KKLLIGICGSISSVGISSYL-LYFKSFFKEIRVVMTK--------TAEDLIP------AHTVSYFC----D---H-VYSE 63 (183)
T ss_dssp CEEEEEECSCGGGGGTHHHH-HHHTTTSSEEEEEECH--------HHHHHSC------HHHHGGGS----S---E-EECT
T ss_pred CEEEEEEeCHHHHHHHHHHH-HHHHHCCCeEEEEEEc--------chhhhcc------HhHHHHhc----c---c-eeec
Confidence 89999999997766666654 4445567776653321 1001000 01122111 1 1 1111
Q ss_pred -CCCHHHHH--HHHHHHhCCCEEEEecCCCCcccc--cc---cHHHHHHccCCceEEEEcC
Q 028280 84 -GDQEGARI--AALVREIGASALVVGLHDRSFLHK--LA---MSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 84 -G~~~~~~I--~~~a~~~~adLIVmG~~~~~~~~~--~g---s~a~~vl~~a~~PVLvV~~ 136 (211)
++ ....+ +..++ .+|++|+-.-..+.+.+ .| +....++...++|+++++.
T Consensus 64 ~~~-~~~~~~Hi~l~~--~aD~~vIaPaTaNtlaKiA~GiaDnL~t~~~la~~~pvviaPa 121 (183)
T d1p3y1_ 64 HGE-NGKRHSHVEIGR--WADIYCIIPATANILGQTANGVAMNLVATTVLAHPHNTIFFPN 121 (183)
T ss_dssp TCS-SSCCCCHHHHHH--HCSEEEEEEECHHHHHHHHTTCCSSHHHHHHHHSSSCCEEEEC
T ss_pred ccc-cccccCceeccc--cccEEEEEecCHHHHHHHHhhhccchhhHHHhhccCceEEEEc
Confidence 11 11111 22333 47999999888777766 33 3555677888999999974
No 91
>d2ajta1 b.43.2.2 (A:329-498) L-arabinose isomerase AraA {Escherichia coli [TaxId: 562]}
Probab=27.53 E-value=68 Score=21.95 Aligned_cols=43 Identities=2% Similarity=-0.085 Sum_probs=35.6
Q ss_pred HHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCC
Q 028280 64 SFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHD 109 (211)
Q Consensus 64 ~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~ 109 (211)
....|+.. |-.-.+.+..|. ..+.+.++|+-.++++|+++...
T Consensus 110 ~~~aWi~A--GgaHHtvls~g~-~~~~l~d~A~~~gIE~v~I~~~t 152 (170)
T d2ajta1 110 ASEAWILA--GGAHHTVFSHAL-NLNDMRQFAEMHDIEITVIDNDT 152 (170)
T ss_dssp HHHHHHHT--CCCSEEEEESSC-CHHHHHHHHHHTTCEEEEESTTC
T ss_pred HHHHHHHc--CCCCeEEEEecc-CHHHHHHHHHHhCCEEEEECCCC
Confidence 35566653 777788889999 99999999999999999999764
No 92
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]}
Probab=27.48 E-value=55 Score=25.15 Aligned_cols=78 Identities=6% Similarity=-0.026 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
..+++...+|.++|...+.+|+++|=.. ..... .-.++.+.+..+++++++++....+. ....++.
T Consensus 170 ~~~~ri~r~Af~~A~~r~~kVt~v~KaN---v~k~~---------~lf~~~~~eva~~yp~I~~~~~~vD~--~~~~lv~ 235 (363)
T d1cnza_ 170 FEIERIARIAFESARKRRRKVTSIDKAN---VLQSS---------ILWREIVNDVAKTYPDVELAHMYIDN--ATMQLIK 235 (363)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTT---TCHHH---------HHHHHHHHHHHTTCTTSEEEEEEHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEccCc---ceeeh---------HHHHHHHHHHhccCCCeEEehHhhhH--HHHHHhh
Confidence 3478889999999988888877766432 22111 11223455555668899888765432 3444443
Q ss_pred HHHHhCCCEEEEec
Q 028280 94 LVREIGASALVVGL 107 (211)
Q Consensus 94 ~a~~~~adLIVmG~ 107 (211)
- -.+.|.||+..
T Consensus 236 ~--P~~fdViv~~N 247 (363)
T d1cnza_ 236 D--PSQFDVLLCSN 247 (363)
T ss_dssp C--GGGCSEEEECH
T ss_pred c--cCCCceeeehh
Confidence 2 35678777754
No 93
>d1e0ta3 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=26.53 E-value=70 Score=19.96 Aligned_cols=44 Identities=16% Similarity=0.206 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccC-CceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSF-NCRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a-~~PVLvV~~~ 137 (211)
++....+.|++.++..||+=+. -|.++..+.+.= +||++.+-+.
T Consensus 5 ia~aa~~~a~~l~akaIvv~T~-------sG~tar~iS~~RP~~pI~a~T~~ 49 (117)
T d1e0ta3 5 VCRGAVETAEKLDAPLIVVATQ-------GGKSARAVRKYFPDATILALTTN 49 (117)
T ss_dssp HHHHHHHHHHHTTCSBEEEECS-------SSHHHHHHHTTCCSSBEEEEESC
T ss_pred HHHHHHHHHHHcCCCEEEEEcC-------CChHHHHHHhhccCCceeeecCC
Confidence 5677888899999998887653 355666777665 4999998754
No 94
>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=26.10 E-value=72 Score=19.90 Aligned_cols=37 Identities=16% Similarity=0.068 Sum_probs=29.9
Q ss_pred CeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEEEecCCC
Q 028280 4 KKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLHVFPSLN 44 (211)
Q Consensus 4 k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~ 44 (211)
++|+|++-|..+|-.++.+.. +.+.++..+|+.....
T Consensus 2 ~KIvvalSGGvDS~vl~~lL~----~~~~~v~a~~~~~~~~ 38 (168)
T d1vl2a1 2 EKVVLAYSGGLDTSVILKWLC----EKGFDVIAYVANVGQK 38 (168)
T ss_dssp CEEEEECCSSHHHHHHHHHHH----HTTCEEEEEEEESSCC
T ss_pred CEEEEEeccHHHHHHHHHHHH----HcCCeEEEEEcccCCC
Confidence 689999999999988877543 4678999999987644
No 95
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}
Probab=26.07 E-value=32 Score=24.46 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=25.8
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEec
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGL 107 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~ 107 (211)
++++..+. +.++... ++|. +...-+..+.+.++|.+|+|+
T Consensus 158 l~~~~~~~-~~~~~I~-vDGG-In~~~i~~l~~aGad~~V~Gs 197 (217)
T d2flia1 158 VAKWRDEK-GLSFDIE-VDGG-VDNKTIRACYEAGANVFVAGS 197 (217)
T ss_dssp HHHHHHHT-TCCCEEE-EESS-CCTTTHHHHHHHTCCEEEESH
T ss_pred HHHHHHhc-CCCeEEE-EeCC-CCHHHHHHHHHCCCCEEEEch
Confidence 55555442 4445543 5565 555556666788999999996
No 96
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]}
Probab=25.98 E-value=61 Score=24.92 Aligned_cols=77 Identities=5% Similarity=-0.012 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHhhccCCCEEEEEEEecCCCccchHHHHHHHHHHHHHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHH
Q 028280 14 DAARAALLWALQNLLRFGDVVTLLHVFPSLNSRNRKKLRLLRLKGYQLALSFKDICNDFFNTNVEIIVTEGDQEGARIAA 93 (211)
Q Consensus 14 ~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~ 93 (211)
..+++.+.+|.++|+....+|+++|=..- . .. . .-..+.+.+..+++++++++...++. ..-.++.
T Consensus 170 ~~~~Riar~Af~~A~~~~k~Vt~v~K~Nv---~-~~--~------~lf~~~~~eva~~yp~I~~~~~~vD~--~~~~lv~ 235 (362)
T d1vlca_ 170 KTVERIARTAFEIAKNRRKKVTSVDKANV---L-YS--S------MLWRKVVNEVAREYPDVELTHIYVDN--AAMQLIL 235 (362)
T ss_dssp HHHHHHHHHHHHHHHTTTSEEEEEECTTT---C-HH--H------HHHHHHHHHHHTTCTTSEEEEEEHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEecCCc---c-cc--h------HHHHHHHHHHHhhCCCeEEEEehHHH--HHHHHHh
Confidence 45788899999999887788888765432 1 11 0 11223455555668899888765433 3333333
Q ss_pred HHHHhCCCEEEEe
Q 028280 94 LVREIGASALVVG 106 (211)
Q Consensus 94 ~a~~~~adLIVmG 106 (211)
- -.+.|.||+.
T Consensus 236 ~--P~~fdViv~~ 246 (362)
T d1vlca_ 236 K--PSQFDVILTT 246 (362)
T ss_dssp C--GGGCSEEEEC
T ss_pred c--cCCCcEEEec
Confidence 2 3567888775
No 97
>d2g50a3 c.49.1.1 (A:396-530) Pyruvate kinase, C-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=25.74 E-value=64 Score=20.79 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCC-ceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFN-CRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~-~PVLvV~~~ 137 (211)
++...++.|.+.++..||+=+. -|.++..+.+.-| ||++.+-+.
T Consensus 16 ia~sav~~a~~l~akaIvv~T~-------sG~tar~vSk~RP~~PI~a~T~~ 60 (135)
T d2g50a3 16 MAMGSVEASYKCLAAALIVLTE-------SGRSAHQVARYRPRAPIIAVTRN 60 (135)
T ss_dssp HHHHHHHHHHHHTCSCEEEECS-------SSHHHHHHHHTCCSSCEEEEESC
T ss_pred HHHHHHHHHHhcCCCEEEEEeC-------ChHHHHHHHhccCCCCeeEeecC
Confidence 4566678888899999887653 3556667776655 999998653
No 98
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=25.60 E-value=1.2e+02 Score=22.17 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=28.4
Q ss_pred CCCEEEEecCC---CCcccc-ccc-HHHHHHccCCceEEEEcCC
Q 028280 99 GASALVVGLHD---RSFLHK-LAM-SHNDISSSFNCRVLAIKQP 137 (211)
Q Consensus 99 ~adLIVmG~~~---~~~~~~-~gs-~a~~vl~~a~~PVLvV~~~ 137 (211)
++|++++|+.. .+.+-. .|+ ...-+.++.++||+|+-+.
T Consensus 176 ~~d~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vP~~V~a~~ 219 (274)
T d1vb5a_ 176 EASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAET 219 (274)
T ss_dssp TCSEEEECCSEECTTSCEEEETTHHHHHHHHHHTTCCEEEECCG
T ss_pred cCCEEEEeeeEEecCCCEEeccchhHHHHHHHHcCCCceEeccc
Confidence 58999999985 233444 888 3335667889999999653
No 99
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=25.59 E-value=1.1e+02 Score=22.03 Aligned_cols=48 Identities=19% Similarity=0.119 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCCEEEEecCCCCcccc--cccHHHHHHccCCceEEEEcC
Q 028280 89 ARIAALVREIGASALVVGLHDRSFLHK--LAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 89 ~~I~~~a~~~~adLIVmG~~~~~~~~~--~gs~a~~vl~~a~~PVLvV~~ 136 (211)
-+..+.|++.++|.+.+.......... +-.--..|...++.||++-..
T Consensus 92 i~~a~~a~~~Gad~v~i~~P~~~~~~~~~l~~~~~~v~~~~~~pi~lYn~ 141 (296)
T d1xxxa1 92 IRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDI 141 (296)
T ss_dssp HHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred HHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 445678888999999887764332222 444556788999999998754
No 100
>d1ii7a_ d.159.1.4 (A:) Mre11 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=25.23 E-value=61 Score=23.20 Aligned_cols=19 Identities=0% Similarity=-0.006 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhCCCEEEEe
Q 028280 88 GARIAALVREIGASALVVG 106 (211)
Q Consensus 88 ~~~I~~~a~~~~adLIVmG 106 (211)
.+.|++.|++.++|+||+.
T Consensus 29 l~~iv~~a~~~~~D~vli~ 47 (333)
T d1ii7a_ 29 FKNALEIAVQENVDFILIA 47 (333)
T ss_dssp HHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHcCCCEEEEC
Confidence 3444445555555544443
No 101
>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2 {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}
Probab=24.39 E-value=50 Score=25.49 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 16 ARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 16 s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
-..+++.++.+|+..|++++++|+...
T Consensus 177 E~~av~r~~~la~~~g~~lhi~HiSt~ 203 (384)
T d2fvka2 177 EGEATNRAITLATTMDTPILFVHVSSP 203 (384)
T ss_dssp HHHHHHHHHHHHHHTTCCEEECSCCCH
T ss_pred hhHHHHHHHHHHHhcCceEEecccccc
Confidence 356789999999999999999998753
No 102
>d2r7ka1 c.30.1.8 (A:1-123) 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase PurP {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=24.22 E-value=86 Score=20.17 Aligned_cols=51 Identities=14% Similarity=0.196 Sum_probs=39.9
Q ss_pred HHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccc
Q 028280 64 SFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHK 115 (211)
Q Consensus 64 ~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~ 115 (211)
++.++++.+..-++.+-+.-.. -+-.|++=|++.+..-+++...++....+
T Consensus 6 ei~~il~~Yd~~~i~I~t~~SH-SALqIl~GAk~EGF~Tv~ic~kgR~~~Y~ 56 (123)
T d2r7ka1 6 EILEIFDKYNKDEITIATLGSH-TSLHILKGAKLEGFSTVCITMKGRDVPYK 56 (123)
T ss_dssp HHHHHHTTSCTTSCEEEEESST-THHHHHHHHHHTTCCEEEEECTTSCHHHH
T ss_pred HHHHHHHhcCccccEEEEEecc-hHHHHhhhHHHcCCcEEEEecCCCcchhh
Confidence 4666777665566777777777 78999999999999999999888766544
No 103
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]}
Probab=24.16 E-value=83 Score=19.99 Aligned_cols=59 Identities=15% Similarity=0.113 Sum_probs=30.3
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCc-ccc-cccHHHHHH--ccCCceEEEEc
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSF-LHK-LAMSHNDIS--SSFNCRVLAIK 135 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~-~~~-~gs~a~~vl--~~a~~PVLvV~ 135 (211)
|++++..-.... ..+.+..... ++|+||+|+.-..+ ... +-..-+.+. ...+.++.++-
T Consensus 31 g~~v~~~~~~~~-~~~~~~~~~~--~~d~ii~Gspt~~g~~~~~~~~~l~~l~~~~~~~k~~~~fg 93 (149)
T d1ycga1 31 GCEVKLFKLSVS-DRNDVIKEIL--DARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFG 93 (149)
T ss_dssp TCEEEEEEGGGS-CHHHHHHHHH--HCSEEEEECCCBTTBCCGGGHHHHHHHHHHCCSSCEEEEEE
T ss_pred CCeeEEEEcccc-chHHHhhhhh--hCCeEEEEeecccCCCCHHHHHHHHHHhccccCCCEEEEEe
Confidence 777666534444 3444444333 47999999975432 111 222223332 23356666663
No 104
>d2c4va1 c.23.13.1 (A:1-158) Type II 3-dehydroquinate dehydratase {Helicobacter pylori [TaxId: 210]}
Probab=24.07 E-value=86 Score=21.08 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHh---CCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 60 QLALSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREI---GASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 60 ~~~~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~---~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
++.+.+++.+++. +..++......+ -..+|++..++. ++|-||+-..+-+-.. -.-...+...+.|++=|.-
T Consensus 29 ~i~~~~~~~a~~~-~l~v~l~~~QSN-~EgelId~I~~a~~~~~dgiIINPga~ThtS---~al~DAl~~~~~P~iEVHl 103 (158)
T d2c4va1 29 QIHEIMQTFVKQG-NLDVELEFFQTN-FEGEIIDKIQESVGSDYEGIIINPGAFSHTS---IAIADAIMLAGKPVIEVHL 103 (158)
T ss_dssp HHHHHHHHHHHHH-TCCCEEEEEECS-CHHHHHHHHHHTTSTTEEEEEEECGGGGGTC---HHHHHHHHHSSSCEEEEES
T ss_pred HHHHHHHHHHHHc-CCceehhhHHHh-HHHHHHHHHHHHhCCCcceEEecchhheeee---eehHHHHHhcCCCEEEEEc
Confidence 3444566666553 556666667777 678888887763 5788999875533211 1122455678999987764
No 105
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}
Probab=23.53 E-value=1.3e+02 Score=25.70 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=34.6
Q ss_pred HHHHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCC
Q 028280 63 LSFKDICNDFFNTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDR 110 (211)
Q Consensus 63 ~~l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~ 110 (211)
+.+.++.+..++.++-+++..++ ..+.|...+.+.++|.|++..+.-
T Consensus 560 ~~I~~Lr~~~~~~pv~vKl~~~~-~~~~i~~~v~ka~~D~I~IdG~eG 606 (771)
T d1ea0a2 560 QLIYDLKQINPDAKVTVKLVSRS-GIGTIAAGVAKANADIILISGNSG 606 (771)
T ss_dssp HHHHHHHHHCTTCEEEEEEECCT-THHHHHHHHHHTTCSEEEEECTTC
T ss_pred HHHHHHHhcCCCCCEEEEECCcC-cHHHHHHHHHhcCCCEEEEecCCC
Confidence 33444433356888999988888 788888887778999999977643
No 106
>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=23.44 E-value=85 Score=20.26 Aligned_cols=60 Identities=23% Similarity=0.131 Sum_probs=39.3
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+.++-+....-+ .....+++|.+.+.-+ |+|+.|.+.-. +-.+-+.+.....+|++..+.
T Consensus 44 ~~DvvIDFS~p~-~~~~~~~~~~~~~~~~-ViGTTG~~~~~-~~~l~~~~~~~~~ipil~apN 103 (135)
T d1yl7a1 44 NTEVVIDFTHPD-VVMGNLEFLIDNGIHA-VVGTTGFTAER-FQQVESWLVAKPNTSVLIAPN 103 (135)
T ss_dssp TCSEEEECCCTT-THHHHHHHHHHTTCEE-EECCCCCCHHH-HHHHHHHHHSCTTCEEEECSC
T ss_pred cCCEEEEcccHH-HHHHHHHHHHhcCCCE-EEeccccchhH-HHHHHHHHHhcCCCCEEEcCC
Confidence 444555545555 6788888999888876 67998877421 223333345566799998764
No 107
>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}
Probab=23.20 E-value=27 Score=22.34 Aligned_cols=26 Identities=23% Similarity=0.074 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhccCCCEEEEEEEecC
Q 028280 16 ARAALLWALQNLLRFGDVVTLLHVFPS 42 (211)
Q Consensus 16 s~~al~~A~~la~~~~a~l~llhV~~~ 42 (211)
...|++||+.|++ ...+++++|=.+.
T Consensus 36 GdsA~e~A~~L~~-~a~~V~li~r~~~ 61 (126)
T d1trba2 36 GNTAVEEALYLSN-IASEVHLIHRRDG 61 (126)
T ss_dssp SHHHHHHHHHHTT-TSSEEEEECSSSS
T ss_pred CHHHHHHHHHHhh-cCCcEEEEeeccc
Confidence 3568999999987 7899999986654
No 108
>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.18 E-value=92 Score=19.78 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEc
Q 028280 90 RIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIK 135 (211)
Q Consensus 90 ~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~ 135 (211)
.+..+. +.++|+||+|+..+..+. +.......+++.++.|-++.
T Consensus 52 ~l~~~l-~~~peilliGtG~~~~~~-l~~~~~~~l~~~gi~ve~m~ 95 (121)
T d2q4qa1 52 DVKEVV-EKGVQTLVIGRGMSEALK-VPSSTVEYLKKHGIDVRVLQ 95 (121)
T ss_dssp HHHHHH-TTCCSEEEEECCSSCCSC-CCHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHh-ccCCCEEEEcCCCCcccC-CCHHHHHHHHHcCCceEEeC
Confidence 344443 558999999986554331 33344566788888887774
No 109
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]}
Probab=22.08 E-value=81 Score=20.50 Aligned_cols=49 Identities=12% Similarity=0.227 Sum_probs=35.3
Q ss_pred EEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcCCCC
Q 028280 78 EIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQPAA 139 (211)
Q Consensus 78 ~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~~~~ 139 (211)
.+.+..|. +...+...++..++|+++.|........+.+. ++++.++..
T Consensus 92 ~i~l~Hg~-~~~~~~~~~~~~~~d~v~~GHtH~~~~~~~~~------------~~~iNPGSv 140 (165)
T d1s3la_ 92 KFFITHGH-HQSVLEMAIKSGLYDVVIYGHTHERVFEEVDD------------VLVINPGEC 140 (165)
T ss_dssp EEEEEESC-CHHHHHHHHHHSCCSEEEEECSSCCEEEEETT------------EEEEECCCS
T ss_pred EEEEEECC-cccHHHHHhhcCCCCEEEECCcCcceEEEECC------------EEEEECCCC
Confidence 34556788 88888888999999999999766655544432 577776544
No 110
>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=21.92 E-value=30 Score=22.42 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhccCCCEEEEEEEecCC
Q 028280 16 ARAALLWALQNLLRFGDVVTLLHVFPSL 43 (211)
Q Consensus 16 s~~al~~A~~la~~~~a~l~llhV~~~~ 43 (211)
...|++||+.|++ ...+++++|-.+..
T Consensus 43 GdsA~e~A~~L~~-~a~~V~li~r~~~~ 69 (130)
T d1vdca2 43 GDSAMEEANFLTK-YGSKVYIIHRRDAF 69 (130)
T ss_dssp SHHHHHHHHHHTT-TSSEEEEECSSSSC
T ss_pred chHHHHHHHHHhC-CCCcEEEEEecccc
Confidence 3468999999986 77899999877653
No 111
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=21.90 E-value=1.2e+02 Score=20.93 Aligned_cols=67 Identities=4% Similarity=-0.061 Sum_probs=39.1
Q ss_pred HHHHHHHhhhCCCcEEEEEeeCCCHH--HHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 63 LSFKDICNDFFNTNVEIIVTEGDQEG--ARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 63 ~~l~~~~~~~~~i~~~~~v~~G~~~~--~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+.+++.+.+. |..+......++ +. ..+++.+...++|-+|+........ .........++||+++..
T Consensus 20 ~gi~~~~~~~-gy~~~~~~~~~d-~~~~~~~~~~l~~~~vdgiIi~~~~~~~~-----~~~~~~~~~~iPvV~~~~ 88 (282)
T d1dbqa_ 20 EAVEKNCFQK-GYTLILGNAWNN-LEKQRAYLSMMAQKRVDGLLVMCSEYPEP-----LLAMLEEYRHIPMVVMDW 88 (282)
T ss_dssp HHHHHHHHHH-TCEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEEECSCCCHH-----HHHHHHHTTTSCEEEEEC
T ss_pred HHHHHHHHHc-CCEEEEEeCCCC-HHHHHHHHHHHHhcCCCEEeeecccccch-----hhhhHHhhcCCCceEEEe
Confidence 3355555543 665554444444 54 3567777888999977765443321 112334456799999864
No 112
>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}
Probab=21.74 E-value=1.4e+02 Score=21.57 Aligned_cols=60 Identities=13% Similarity=-0.015 Sum_probs=28.2
Q ss_pred CCcEEEEEeeCCCHHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHcc-CCceEEEEcCC
Q 028280 74 NTNVEIIVTEGDQEGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSS-FNCRVLAIKQP 137 (211)
Q Consensus 74 ~i~~~~~v~~G~~~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~-a~~PVLvV~~~ 137 (211)
+.+++.....+..-...+++.+...+.|.||+.. |-+.+ ..+...++.+ ..+|+.+++.+
T Consensus 33 ~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~G-GDGTv---~~v~~~l~~~~~~~~l~iiP~G 93 (312)
T d2qv7a1 33 GYETSAYATEKIGDATLEAERAMHENYDVLIAAG-GDGTL---NEVVNGIAEKPNRPKLGVIPMG 93 (312)
T ss_dssp TEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEE-CHHHH---HHHHHHHTTCSSCCEEEEEECS
T ss_pred CCeEEEEEcCCccHHHHHHHHHHHcCCCEEEEEc-CCcHH---HHHHHHHHhhccccceEEeecC
Confidence 5555544433321344445444455677766653 22222 2233333322 23677777653
No 113
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}
Probab=21.50 E-value=1.3e+02 Score=21.17 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=38.7
Q ss_pred HHHHHHHhhhCCCcEEEEEeeCCCHHHH--HHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 63 LSFKDICNDFFNTNVEIIVTEGDQEGAR--IAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 63 ~~l~~~~~~~~~i~~~~~v~~G~~~~~~--I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+.+++.+++. |.++. ....++ ..+. .++.+...++|-||+......... ..-+-+...++||+.+..
T Consensus 21 ~g~~~aa~~~-G~~~i-~~~~~d-~~~q~~~i~~li~~~vDgiIi~~~~~~~~~----~~~~~a~~~giPVV~~d~ 89 (305)
T d8abpa_ 21 KFADKAGKDL-GFEVI-KIAVPD-GEKTLNAIDSLAASGAKGFVICTPDPKLGS----AIVAKARGYDMKVIAVDD 89 (305)
T ss_dssp HHHHHHHHHH-TEEEE-EEECCS-HHHHHHHHHHHHHTTCCEEEEECSCGGGHH----HHHHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHc-CCEEE-EEcCCC-HHHHHHHHHHHHHcCCCEEEEccccccccH----HHHHHHHhcCCCEEEEcC
Confidence 3344555544 66552 233333 5433 334455679999999876443322 122456788999999864
No 114
>d1uz5a3 c.57.1.2 (A:181-328) MoeA, central domain {Archaeon Pyrococcus horikoshii, PH0582 [TaxId: 53953]}
Probab=21.43 E-value=82 Score=20.54 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=22.1
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHHh--CCCEEEEec
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVREI--GASALVVGL 107 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~~--~adLIVmG~ 107 (211)
+..++++. |.++......+| -.+.|.+..++. ++|+||+..
T Consensus 32 l~~~l~~~-G~~v~~~~~v~D-d~~~i~~~i~~~~~~~DliIttG 74 (148)
T d1uz5a3 32 LCDAINEL-GGEGIFMGVARD-DKESLKALIEKAVNVGDVVVISG 74 (148)
T ss_dssp HHHHHHHH-TSEEEEEEEECS-SHHHHHHHHHHHHHHCSEEEEEC
T ss_pred HHHhhhcc-cccceeeeeecc-HHHHHHHHHHhhhccccEEEECC
Confidence 44444444 666655555555 244444444332 579888764
No 115
>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.20 E-value=82 Score=20.62 Aligned_cols=40 Identities=10% Similarity=0.107 Sum_probs=22.1
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCHHHHHHHHHHH--hCCCEEEEe
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQEGARIAALVRE--IGASALVVG 106 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~~~~I~~~a~~--~~adLIVmG 106 (211)
+..++++. |.++......+| -.+.|.+..++ .++|+||+.
T Consensus 32 l~~~l~~~-G~~v~~~~~v~D-d~~~i~~~l~~~~~~~Dliitt 73 (155)
T d2ftsa3 32 LLATIQEH-GYPTINLGIVGD-NPDDLLNALNEGISRADVIITS 73 (155)
T ss_dssp HHHHHHTT-TCCEEEEEEECS-SHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHhccc-ccceEEEEEecC-chhHHHHHHHHhhcccCEEEEe
Confidence 45555554 676666555555 24444443332 358998874
No 116
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.62 E-value=1.2e+02 Score=22.78 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=40.5
Q ss_pred HHHHHhhhCCCcEEEEEeeCCCH----HHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCCceEEEEcC
Q 028280 65 FKDICNDFFNTNVEIIVTEGDQE----GARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFNCRVLAIKQ 136 (211)
Q Consensus 65 l~~~~~~~~~i~~~~~v~~G~~~----~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~~PVLvV~~ 136 (211)
+.+.+.+ .++.+...+..|+ + .+.+.+.+++.++|+||--..| + ...++..+....++|++.|+-
T Consensus 49 l~~~L~~-~~i~~~~~~~~~~-p~~~~v~~~~~~~~~~~~D~IiavGGG-s----~iD~aK~iA~~~~~p~i~IPT 117 (366)
T d1jq5a_ 49 IVNELKK-GNIAAEEVVFSGE-ASRNEVERIANIARKAEAAIVIGVGGG-K----TLDTAKAVADELDAYIVIVPT 117 (366)
T ss_dssp HHHHHHT-TTCEEEEEECCSS-CBHHHHHHHHHHHHHTTCSEEEEEESH-H----HHHHHHHHHHHHTCEEEEEES
T ss_pred HHHHHHH-CCCeEEEEEeCCC-CCHHHHHHHHHHhhccCCcEEEEecCC-c----cccchheeeecccceeeehhh
Confidence 4444443 3677766666666 4 3556677888899977644311 1 222555666777899999974
No 117
>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=20.35 E-value=31 Score=25.35 Aligned_cols=29 Identities=7% Similarity=0.240 Sum_probs=0.0
Q ss_pred CCeEEEEecCCHHHHHHHHHHHHhhccCCCEEEEEE
Q 028280 3 VKKIVVIVEDVDAARAALLWALQNLLRFGDVVTLLH 38 (211)
Q Consensus 3 ~k~ILv~vD~s~~s~~al~~A~~la~~~~a~l~llh 38 (211)
.++|++++|.+. ..++.|...++.+.+.|
T Consensus 36 V~kI~v~lD~t~-------~vi~~Ai~~~adlIItH 64 (265)
T d2fywa1 36 IQRVMVALDIRE-------ETVAEAIEKGVDLIIVK 64 (265)
T ss_dssp CSEEEEESCCCH-------HHHHHHHHTTCSEEEES
T ss_pred cCEEEEEEcCCH-------HHHHHHHHcCCCEEEec
No 118
>d1a3xa3 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.34 E-value=58 Score=20.91 Aligned_cols=44 Identities=20% Similarity=0.156 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCCEEEEecCCCCcccccccHHHHHHccCC-ceEEEEcCC
Q 028280 87 EGARIAALVREIGASALVVGLHDRSFLHKLAMSHNDISSSFN-CRVLAIKQP 137 (211)
Q Consensus 87 ~~~~I~~~a~~~~adLIVmG~~~~~~~~~~gs~a~~vl~~a~-~PVLvV~~~ 137 (211)
++...++.|.+.++..||+=+. -|..+..+.+.-| ||++.+-+.
T Consensus 16 ia~sAv~~a~~l~a~aIvv~T~-------sG~ta~~vSk~RP~~pI~a~T~~ 60 (134)
T d1a3xa3 16 VAASAVAAVFEQKAKAIIVLST-------SGTTPRLVSKYRPNCPIILVTRC 60 (134)
T ss_dssp HHHHHHHHHHHHTCSCCCEECS-------SSHHHHHHHHTCCSSCEEEEESC
T ss_pred HHHHHHHHHHHcCCCEEEEEcC-------CcHHHHHHHHhcCCCCEEEEecC
Confidence 5666677888889998777543 3555666766554 999988653
Done!