Query 028281
Match_columns 211
No_of_seqs 114 out of 132
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 14:48:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zsq_A Myotubularin-related pr 93.0 0.28 9.4E-06 46.7 8.0 101 94-206 7-111 (528)
2 1lw3_A Myotubularin-related pr 91.2 0.56 1.9E-05 45.9 8.1 107 74-193 60-170 (657)
3 2hth_B Vacuolar protein sortin 80.1 2 6.8E-05 33.9 4.4 51 114-176 35-85 (140)
4 2yf0_A Myotubularin-related pr 74.3 12 0.00041 35.5 8.6 68 110-194 18-85 (512)
5 2cay_A VPS36 PH domain, vacuol 68.5 3.5 0.00012 32.8 3.1 48 114-172 48-95 (145)
6 1vcb_B Protein (elongin C); tu 47.3 7.3 0.00025 29.4 1.5 20 169-188 12-31 (112)
7 2coa_A Protein kinase C, D2 ty 41.8 32 0.0011 27.3 4.4 50 134-187 34-87 (125)
8 2d9z_A Protein kinase C, NU ty 39.6 23 0.00078 28.3 3.3 44 144-190 42-89 (129)
9 1hv2_A Elongin C, ELC1; protei 39.6 14 0.00048 26.9 1.9 17 172-188 2-18 (99)
10 2fnj_C Transcription elongatio 36.2 14 0.00048 26.7 1.5 15 174-188 1-15 (96)
11 1zyi_A Methylosome subunit pic 34.9 33 0.0011 28.1 3.7 29 106-135 32-60 (171)
12 4ag4_A Epithelial discoidin do 34.0 27 0.00093 31.4 3.3 59 100-158 250-315 (351)
13 4ajy_C Transcription elongatio 31.9 18 0.00061 25.9 1.4 13 175-187 3-15 (97)
14 2aze_B Transcription factor E2 26.2 21 0.00073 27.1 1.0 15 104-118 85-99 (106)
15 2kq8_A Cell WALL hydrolase; GF 23.8 8.8 0.0003 26.1 -1.4 22 59-80 13-34 (70)
16 2rpa_A Katanin P60 ATPase-cont 23.0 25 0.00084 25.6 0.8 18 193-210 27-44 (78)
17 1pfj_A TFIIH basal transcripti 22.8 1.8E+02 0.0061 22.4 5.7 76 119-209 22-104 (108)
18 2zou_A Spondin-1; beta-sandwic 21.4 1.1E+02 0.0037 23.8 4.3 53 129-192 5-57 (149)
19 3vub_A CCDB; topoisomerase poi 20.7 97 0.0033 23.3 3.7 37 148-189 28-64 (101)
20 2kmt_A CCDB; toxin; NMR {Vibri 20.4 93 0.0032 23.3 3.6 36 149-189 33-68 (105)
No 1
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*
Probab=92.97 E-value=0.28 Score=46.70 Aligned_cols=101 Identities=16% Similarity=0.190 Sum_probs=61.1
Q ss_pred ccCCccchhhhhccc--eeecCCCcceeeEEeeeceeeeecCCceeeeCCCCCeeeeeEEEEEecccccccccccCCCCC
Q 028281 94 FGLTEGEEFLKASQC--YLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKP 171 (211)
Q Consensus 94 F~v~~~EkLlKa~~C--YLSTtaGPVaG~LfIST~kvAFcSDrpl~~~sp~G~~~~~yYKVvIPL~kik~Vnps~n~~nP 171 (211)
|...|||.+...-.- |++.-.||+.|+|||++-|+.|.++.. +. .+.+-|||..|..|.........
T Consensus 7 ~~lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~--------~~---~~~~~iPL~~I~~vek~~~~s~~ 75 (528)
T 1zsq_A 7 PPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFVLDASLGVINRVEKIGGASSR 75 (528)
T ss_dssp CCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEEEEEEGGGEEEEEEECCTTCC
T ss_pred CccCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCC--------Cc---cEEEEeeccceEEEEEcCCCCcC
Confidence 567899999855211 555567999999999999999998521 11 24678999888777643221111
Q ss_pred C--CceEEEEEecCceeeeeccccHHHHHHHHHHHHh
Q 028281 172 E--QKYVEIVTVDDFEFWFMGFLRYEKAYRNLQKAIS 206 (211)
Q Consensus 172 s--eKYIqIVTvD~~eFWFMGFvnY~KA~k~Lq~Ais 206 (211)
. --.|+|..-|-. .+=.+|-.=+...+.+-++|+
T Consensus 76 ~~~~~~l~I~CKDfr-~~~f~f~~~~~~~~~v~~~L~ 111 (528)
T 1zsq_A 76 GENSYGLETVCKDIR-NLRFAHKPEGRTRRSIFENLM 111 (528)
T ss_dssp STTCSEEEEEETTTE-EEEEECCGGGCCHHHHHHHHH
T ss_pred CCCCceEEEEccCCe-EEEEEecCchHHHHHHHHHHH
Confidence 1 124777776644 444445433232333444443
No 2
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A
Probab=91.23 E-value=0.56 Score=45.93 Aligned_cols=107 Identities=15% Similarity=0.204 Sum_probs=56.7
Q ss_pred hhcchhhhhccCcceeeeecccCCccchhhhhcc-c-eeecCCCcceeeEEeeeceeeeecCCceeeeCCCCCeeeeeEE
Q 028281 74 LSLGAKIIQKGGRENIFKQIFGLTEGEEFLKASQ-C-YLSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYK 151 (211)
Q Consensus 74 lslGaKil~~GG~ekiFkQ~F~v~~~EkLlKa~~-C-YLSTtaGPVaG~LfIST~kvAFcSDrpl~~~sp~G~~~~~yYK 151 (211)
+++.-++|+.|-.. -=.--|...|||.+...-. . |+..-.||+.|+|||++.|+.|.++.. +. .+.
T Consensus 60 ~~~~~~~~~~~~~~-~~~~~~~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~--------~~---~~~ 127 (657)
T 1lw3_A 60 FSPDLRVLRESNKL-AEMEEPPLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMER--------DP---PFV 127 (657)
T ss_dssp ------------------CCCCCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSS--------SS---CEE
T ss_pred hhhhhhhhhccccc-ccCCCCccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCC--------Cc---ceE
Confidence 34444555554321 1112377899999984421 1 444456899999999999999998521 11 245
Q ss_pred EEEecccccccccccCCCCCCC--ceEEEEEecCceeeeecccc
Q 028281 152 VLIPIQKIKSINESENVNKPEQ--KYVEIVTVDDFEFWFMGFLR 193 (211)
Q Consensus 152 VvIPL~kik~Vnps~n~~nPse--KYIqIVTvD~~eFWFMGFvn 193 (211)
+-|||..|..|..........+ -.|+|..-|- ..+=.+|-.
T Consensus 128 ~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CKDf-R~~~f~f~~ 170 (657)
T 1lw3_A 128 LDASLGVINRVEKIGGASSRGENSYGLETVCKDI-RNLRFAHKP 170 (657)
T ss_dssp EEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTT-EEEEEECCG
T ss_pred EEecccceEEEEecCCCcccCCCCceEEEEecCC-cEEEEEeCC
Confidence 7899988888875332111111 2477776664 444444543
No 3
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=80.09 E-value=2 Score=33.91 Aligned_cols=51 Identities=20% Similarity=0.193 Sum_probs=34.8
Q ss_pred CCcceeeEEeeeceeeeecCCceeeeCCCCCeeeeeEEEEEecccccccccccCCCCCCCceE
Q 028281 114 RGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQKYV 176 (211)
Q Consensus 114 aGPVaG~LfIST~kvAFcSDrpl~~~sp~G~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYI 176 (211)
++--.|.||++|.||.|-.+.. + ..-+.|||..|+.+...+..-..+-|++
T Consensus 35 ~~~k~G~l~LTshRli~~d~~~-----~-------~~s~~lpl~~v~~~e~~~~~f~~s~Ki~ 85 (140)
T 2hth_B 35 IKFDAGTLLLSTHRLIWRDQKN-----H-------ECCMAILLSQIVFIEEQAAGIGKSAKIV 85 (140)
T ss_dssp SCCCCEEEEEESSEEEEEETTC-----C-------SCCEEEEGGGEEEEEEECCTTSSCCEEE
T ss_pred CCCcCCEEEEecCEEEEecCCC-----C-------ceEEEEEhHHeeeeeeeccccccCceEE
Confidence 4557899999999999965432 0 0346788888877777666555555554
No 4
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}
Probab=74.32 E-value=12 Score=35.48 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=40.1
Q ss_pred eecCCCcceeeEEeeeceeeeecCCceeeeCCCCCeeeeeEEEEEecccccccccccCCCCCCCceEEEEEecCceeeee
Q 028281 110 LSTTRGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFM 189 (211)
Q Consensus 110 LSTtaGPVaG~LfIST~kvAFcSDrpl~~~sp~G~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIqIVTvD~~eFWFM 189 (211)
++.+.+|+.|+|||++.|+.|.+|.+ + .+.||+..|.+|.-.... ....-|+|..-|-.-+=|
T Consensus 18 ~~~~~~~~~GtL~lTn~~LiF~~~~~--------~------e~wi~~~~I~~VeK~~~~--~~~~~l~I~CKDfr~~~f- 80 (512)
T 2yf0_A 18 FSTSNKSLTGTLYLTATHLLFIDSHQ--------K------ETWILHHHIASVEKLALT--TSGCPLVIQCKNFRTVHF- 80 (512)
T ss_dssp ------CCEEEEEECSSEEEEEESSS--------C------EEEEEGGGEEEEEECCCB--TTBEEEEEEETTSCEEEE-
T ss_pred cCCCCCceeEEEEEECCEEEEeCCCC--------C------ceEecccceeEEEEecCC--CCCceEEEEecCCcEEEE-
Confidence 35567999999999999999999532 2 245777777777532111 122457777777655444
Q ss_pred ccccH
Q 028281 190 GFLRY 194 (211)
Q Consensus 190 GFvnY 194 (211)
.|-.=
T Consensus 81 ~f~~~ 85 (512)
T 2yf0_A 81 IVPRE 85 (512)
T ss_dssp EESCH
T ss_pred EeCCh
Confidence 35443
No 5
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=68.50 E-value=3.5 Score=32.82 Aligned_cols=48 Identities=10% Similarity=0.225 Sum_probs=32.4
Q ss_pred CCcceeeEEeeeceeeeecCCceeeeCCCCCeeeeeEEEEEecccccccccccCCCCCC
Q 028281 114 RGPIAGLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPE 172 (211)
Q Consensus 114 aGPVaG~LfIST~kvAFcSDrpl~~~sp~G~~~~~yYKVvIPL~kik~Vnps~n~~nPs 172 (211)
.+--.|.||++|.||-|-.+.+-. -.-+.+||..|+.+...+..-.++
T Consensus 48 ~~~k~G~lyLTshRIIyv~~~~~~-----------~~SfslPL~~v~~~e~~~~~fg~s 95 (145)
T 2cay_A 48 LQRQRGRIFLTSQRIIYIDDAKPT-----------QNSLGLELDDLAYVNYSSGFLTRS 95 (145)
T ss_dssp TTCSSEEEEEESSEEEEEESSCHH-----------HHCEEEEGGGEEEEEEECSSSSSS
T ss_pred cCCCccEEEEEcCeEEEecCCCCc-----------ceEEEeEhHheeeeeEEcCccccC
Confidence 567889999999999996543200 023577777777777666554444
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=47.33 E-value=7.3 Score=29.36 Aligned_cols=20 Identities=30% Similarity=0.682 Sum_probs=13.9
Q ss_pred CCCCCceEEEEEecCceeee
Q 028281 169 NKPEQKYVEIVTVDDFEFWF 188 (211)
Q Consensus 169 ~nPseKYIqIVTvD~~eFWF 188 (211)
+-|..+||.++|-||++|--
T Consensus 12 ~~~~~~~v~L~SsDG~~F~V 31 (112)
T 1vcb_B 12 EGPDAMYVKLISSDGHEFIV 31 (112)
T ss_dssp -----CEEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEcCCCCEEEE
Confidence 45667999999999999964
No 7
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=41.84 E-value=32 Score=27.28 Aligned_cols=50 Identities=24% Similarity=0.458 Sum_probs=34.3
Q ss_pred CceeeeCCCCCeeeeeEEEEEecccccccccccCCCC--CC--CceEEEEEecCceee
Q 028281 134 RSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNK--PE--QKYVEIVTVDDFEFW 187 (211)
Q Consensus 134 rpl~~~sp~G~~~~~yYKVvIPL~kik~Vnps~n~~n--Ps--eKYIqIVTvD~~eFW 187 (211)
.+|++.- .+...-|||. |||.+|-.|.|..+... +. .-..||+| .+-.|.
T Consensus 34 K~Itlf~--~e~~~~~yke-IpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T-~~~~yy 87 (125)
T 2coa_A 34 KCITLFQ--NNTTNRYYKE-IPLSEILTVESAQNFSLVPPGTNPHCFEIVT-ANATYF 87 (125)
T ss_dssp SEEEEES--SSSCSSCSEE-EETTTCCEEEESCCCSSSCTTSCCEEEEEEC-SSCCCC
T ss_pred CeEEEEe--cCCCCceeee-eehhHeecccccccccccCCCCCCceEEEEe-CCeEEE
Confidence 3455442 2445668887 99999999999876653 22 26799999 566664
No 8
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.61 E-value=23 Score=28.33 Aligned_cols=44 Identities=27% Similarity=0.484 Sum_probs=32.1
Q ss_pred CeeeeeEEEEEecccccccccccCCCC--CCC--ceEEEEEecCceeeeec
Q 028281 144 ELIRTPYKVLIPIQKIKSINESENVNK--PEQ--KYVEIVTVDDFEFWFMG 190 (211)
Q Consensus 144 ~~~~~yYKVvIPL~kik~Vnps~n~~n--Pse--KYIqIVTvD~~eFWFMG 190 (211)
+...-|||. |||.+|-.|.|..+... +.. -+.||+| ++-.|. .|
T Consensus 42 e~~~k~yke-IpLseIL~v~~~~~~~~~~~~~~phcFEi~T-~~~~y~-Vg 89 (129)
T 2d9z_A 42 ESGSKYYKE-IPLSEILRISSPRDFTNISQGSNPHCFEIIT-DTMVYF-VG 89 (129)
T ss_dssp SSCCSCCCE-ECTTTCCEECCTTCCCCSSSCSCCCSEEEEC-SSCEEE-EC
T ss_pred CCCCceece-eeHHHhcccccccCccccCCCCCCceEEEEE-CCEEEE-Ec
Confidence 445668888 99999999999876653 222 6799998 677664 44
No 9
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=39.60 E-value=14 Score=26.93 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=14.6
Q ss_pred CCceEEEEEecCceeee
Q 028281 172 EQKYVEIVTVDDFEFWF 188 (211)
Q Consensus 172 seKYIqIVTvD~~eFWF 188 (211)
+.+||.++|-||++|--
T Consensus 2 ~~~~v~L~SsDg~~f~V 18 (99)
T 1hv2_A 2 SQDFVTLVSKDDKEYEI 18 (99)
T ss_dssp CCSEEEEEETTTEEEEE
T ss_pred CCcEEEEEecCCCEEEE
Confidence 36899999999999964
No 10
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=36.22 E-value=14 Score=26.71 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=13.4
Q ss_pred ceEEEEEecCceeee
Q 028281 174 KYVEIVTVDDFEFWF 188 (211)
Q Consensus 174 KYIqIVTvD~~eFWF 188 (211)
+||.++|-||++|--
T Consensus 1 ~~v~L~SsDg~~f~V 15 (96)
T 2fnj_C 1 MYVKLISSDGHEFIV 15 (96)
T ss_dssp CEEEEECTTSCEEEE
T ss_pred CeEEEEecCCCEEEe
Confidence 699999999999964
No 11
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris}
Probab=34.88 E-value=33 Score=28.14 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=21.9
Q ss_pred ccceeecCCCcceeeEEeeeceeeeecCCc
Q 028281 106 SQCYLSTTRGPIAGLLFISNKKIAFCSERS 135 (211)
Q Consensus 106 ~~CYLSTtaGPVaG~LfIST~kvAFcSDrp 135 (211)
-++||-.. ++-.|+|||++.||.+-|+..
T Consensus 32 v~~vl~~~-~~g~GtLyVt~~~l~W~~~~~ 60 (171)
T 1zyi_A 32 TEAVLNGK-GLGTGTLYIAESRLSWLDGSG 60 (171)
T ss_dssp EEEEBTTB-CCCEEEEEEETTEEEEEETTT
T ss_pred EEEEECCC-ccCceEEEEEcCEEEEEcCCC
Confidence 46777553 334599999999999998753
No 12
>4ag4_A Epithelial discoidin domain-containing receptor 1; immune system-transferase complex; HET: NAG; 2.80A {Homo sapiens}
Probab=33.99 E-value=27 Score=31.35 Aligned_cols=59 Identities=7% Similarity=-0.019 Sum_probs=43.2
Q ss_pred chhhhhccceeecCCCcceeeEEeeeceeeeecC-------CceeeeCCCCCeeeeeEEEEEeccc
Q 028281 100 EEFLKASQCYLSTTRGPIAGLLFISNKKIAFCSE-------RSISYSSSTGELIRTPYKVLIPIQK 158 (211)
Q Consensus 100 EkLlKa~~CYLSTtaGPVaG~LfIST~kvAFcSD-------rpl~~~sp~G~~~~~yYKVvIPL~k 158 (211)
+++++=.+|.|-+..=.--|+-.-|..++=|++| .|+.|+.+.-...++-.-|.|||++
T Consensus 250 d~~RnFt~~~ih~~n~~~~~v~~f~~~~~~Fs~~~~~~~~~~p~~~~~~~d~~~~~ar~v~i~l~~ 315 (351)
T 4ag4_A 250 DRLRAFQAMQVHCNNMHTLGARLPGGVECRFRRGPAMAWEGEPMRHNLGGNLGDPRARAVSVPLGG 315 (351)
T ss_dssp EEEEEEEEEEEEECCCGGGTBCCCSEEEEEEECSSSSSCSSSCEEEECSSCCSCCSCEEEEEEEEE
T ss_pred CcEEEEEEEEEEecccccccceeeeEEEEEEECCCCccccCCceEeecCCCcCCCccceEEEeCCC
Confidence 4567777888888777777777778888888887 3888886433333445669999983
No 13
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=31.93 E-value=18 Score=25.85 Aligned_cols=13 Identities=38% Similarity=0.828 Sum_probs=11.9
Q ss_pred eEEEEEecCceee
Q 028281 175 YVEIVTVDDFEFW 187 (211)
Q Consensus 175 YIqIVTvD~~eFW 187 (211)
||.++|.||++|-
T Consensus 3 ~v~L~SsDg~~F~ 15 (97)
T 4ajy_C 3 YVKLISSDGHEFI 15 (97)
T ss_dssp EEEEECTTCCEEE
T ss_pred EEEEEecCCcEEE
Confidence 8999999999984
No 14
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=26.15 E-value=21 Score=27.05 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=13.5
Q ss_pred hhccceeecCCCcce
Q 028281 104 KASQCYLSTTRGPIA 118 (211)
Q Consensus 104 Ka~~CYLSTtaGPVa 118 (211)
+.|++||..+.|||-
T Consensus 85 ~~yqi~LkS~~GPId 99 (106)
T 2aze_B 85 ENFQISLKSKQGPID 99 (106)
T ss_dssp SCEEEEEECSSSCCE
T ss_pred cceEEEEECCCCCEE
Confidence 489999999999984
No 15
>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}
Probab=23.75 E-value=8.8 Score=26.06 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.0
Q ss_pred hcccCCChhHHHHHhhhcchhh
Q 028281 59 HVKMGPKFSETVKSKLSLGAKI 80 (211)
Q Consensus 59 h~k~gpsiseta~GKlslGaKi 80 (211)
+||.||+..-.+.|+|..|+++
T Consensus 13 nvRsgP~~~~~ii~~l~~G~~v 34 (70)
T 2kq8_A 13 NVRSGEGTNYRIIGALPQGQKV 34 (70)
T ss_dssp CSSSSSSSCTTSCCCCCSSSSC
T ss_pred EEEcCCCCCCceEEEECCCCEE
Confidence 7999999999999999999875
No 16
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.04 E-value=25 Score=25.62 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=15.8
Q ss_pred cHHHHHHHHHHHHhhhcc
Q 028281 193 RYEKAYRNLQKAISMANE 210 (211)
Q Consensus 193 nY~KA~k~Lq~Ais~~~~ 210 (211)
|||.|+.+++.|+++-++
T Consensus 27 nYdta~~yY~g~~~qI~k 44 (78)
T 2rpa_A 27 NYDSAMVYYQGVLDQMNK 44 (78)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 899999999999987654
No 17
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=22.80 E-value=1.8e+02 Score=22.40 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=47.1
Q ss_pred eeEEeeeceeeeecCCceeeeCCCCCeeeeeEEEEEecccccccccccCCCCCCCceEEEEEecCceeeeeccccHH---
Q 028281 119 GLLFISNKKIAFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFLRYE--- 195 (211)
Q Consensus 119 G~LfIST~kvAFcSDrpl~~~sp~G~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIqIVTvD~~eFWFMGFvnY~--- 195 (211)
|+||++..+|+...+.. +. --|.+|..+|+.-..| ...-+.==+||+-.|+-.+=|- |.|=.
T Consensus 22 GtL~l~~d~i~W~p~~~-------~~-----~~vs~~~~~I~~qq~S--P~~k~KVqLqi~l~~~~~~~F~-Ftn~~~a~ 86 (108)
T 1pfj_A 22 GALYLMAERIAWAPEGK-------DR-----FTISHMYADIKCQKIS--PEGKAKIQLQLVLHAGDTTNFH-FSNESTAV 86 (108)
T ss_dssp CEEEEETTEEEEECSSS-------SS-----CSEEEETTTCCCEEEC--CSSSSSCEEEEECSSSCEEEEE-CCCSSCTT
T ss_pred ceEEEEcceEEEccCCC-------CC-----ceEEEehhhhhcceeC--CCCCccEEEEEEEeCCCceEEE-EcCcHHHH
Confidence 99999999988766433 11 2467789999864433 3333555678888877666553 55522
Q ss_pred ---HHHH-HHHHHHhhhc
Q 028281 196 ---KAYR-NLQKAISMAN 209 (211)
Q Consensus 196 ---KA~k-~Lq~Ais~~~ 209 (211)
.|+| .|+++|..++
T Consensus 87 ~erd~VKd~L~~~l~~~k 104 (108)
T 1pfj_A 87 KERDAVKDLLQQLLPKFK 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 1343 4556665543
No 18
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=21.40 E-value=1.1e+02 Score=23.81 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=27.4
Q ss_pred eeecCCceeeeCCCCCeeeeeEEEEEecccccccccccCCCCCCCceEEEEEecCceeeeeccc
Q 028281 129 AFCSERSISYSSSTGELIRTPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFMGFL 192 (211)
Q Consensus 129 AFcSDrpl~~~sp~G~~~~~yYKVvIPL~kik~Vnps~n~~nPseKYIqIVTvD~~eFWFMGFv 192 (211)
+-| ||-..... .-+..-.+|.|.|.= +.+...|.+.|---+.-..- =.|+||+
T Consensus 5 ~aC-~~~p~~~~-~~~~~~~py~i~i~~--------~~~~y~pG~~~~VtL~~~~~-~~F~GFl 57 (149)
T 2zou_A 5 GYC-SRILRAQG-TRREGYTEFSLRVEG--------DPDFYKPGTSYRVTLSAAPP-SYFRGFT 57 (149)
T ss_dssp -CC-TTC--------CCSCCSEEEEETT--------CCSSBCTTCEEEEEEEECTT-CCBSEEE
T ss_pred hhh-cCCCCCCC-CCCCCCCCEEEEEec--------CCceEcCCCcEEEEEeccCC-CceEEEE
Confidence 457 66544433 224455689988752 23567889998433332211 2589997
No 19
>3vub_A CCDB; topoisomerase poison; 1.40A {Escherichia coli} SCOP: b.34.6.1 PDB: 1x75_C* 1vub_A 2vub_A 3g7z_A 3hpw_A 4vub_A
Probab=20.66 E-value=97 Score=23.26 Aligned_cols=37 Identities=16% Similarity=0.400 Sum_probs=24.2
Q ss_pred eeEEEEEecccccccccccCCCCCCCceEEEEEecCceeeee
Q 028281 148 TPYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFM 189 (211)
Q Consensus 148 ~yYKVvIPL~kik~Vnps~n~~nPseKYIqIVTvD~~eFWFM 189 (211)
-...|||||-......+ +|..+.-=++++||.+|-.|
T Consensus 28 L~tRvVvPL~~~~~~~~-----~~~~~L~P~~~i~G~~~vl~ 64 (101)
T 3vub_A 28 PGRRMVIPLASARLLSD-----KVSRELYPVVHIGDESWRMM 64 (101)
T ss_dssp TTEEEEEEEEESSSSCS-----SSCTTTSCEEEETTEEEEEC
T ss_pred cCceEEEECCChhHcCc-----ccCcccceEEEECCEEEEEe
Confidence 35689999987765543 22233334788999888654
No 20
>2kmt_A CCDB; toxin; NMR {Vibrio fischeri} PDB: 3jrz_A 3jsc_A 3ku8_C* 3kua_C*
Probab=20.40 E-value=93 Score=23.27 Aligned_cols=36 Identities=17% Similarity=0.461 Sum_probs=23.0
Q ss_pred eEEEEEecccccccccccCCCCCCCceEEEEEecCceeeee
Q 028281 149 PYKVLIPIQKIKSINESENVNKPEQKYVEIVTVDDFEFWFM 189 (211)
Q Consensus 149 yYKVvIPL~kik~Vnps~n~~nPseKYIqIVTvD~~eFWFM 189 (211)
...|||||-......+ +|..+.-=++++||.+|..|
T Consensus 33 ~trvVvPL~~~~~~~~-----~~~~~L~P~~~i~g~~~~l~ 68 (105)
T 2kmt_A 33 NTRLVIPLTPIELLDK-----KAPSHLCPTIHIDEGDFIML 68 (105)
T ss_dssp SCCEECCEECTTTTCS-----CCCSSSSCEEEETTEEEEEC
T ss_pred CcEEEEECCchhhccc-----cCCCCeeeEEEECCEEEEEE
Confidence 3589999977655443 12333333678899988765
Done!