BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028282
         (211 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q313R2|MRAZ_DESDG Protein MraZ OS=Desulfovibrio desulfuricans (strain G20) GN=mraZ
           PE=3 SV=1
          Length = 149

 Score = 33.9 bits (76), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 90  FVPAGTFSARLKTSSHGGQTLTKLRFSRNAFTGEDKEKFEKLLQDDDFYRIRLPSNTVSP 149
            +P     A L  S  G  +LT       A+T ED EKFE       F RI+ PS  +  
Sbjct: 18  MLPPEVRDALLAVSPEGRVSLTTFDGCLVAYTPEDWEKFEA-----GFARIKNPSRKM-- 70

Query: 150 PGRDY---IISSVKARCLPREGLDEHFVIHMEGVNI 182
             RD+   +I  V+  C+ ++G  +    HME   I
Sbjct: 71  --RDFRRLVIGGVEELCVDKQGRVKLSRAHMEYAGI 104


>sp|Q9SVN5|SYM_ARATH Probable methionine--tRNA ligase OS=Arabidopsis thaliana
           GN=At4g13780 PE=2 SV=1
          Length = 797

 Score = 30.8 bits (68), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 24/44 (54%)

Query: 158 SVKARCLPREGLDEHFVIHMEGVNILAVNYGAFGACSYPRQLKL 201
           +++  C P+E  D++  IH E  +   +++  FG  S P Q ++
Sbjct: 75  ALEENCTPKEICDKYHAIHKEVYDWFGISFDKFGRTSTPEQTEV 118


>sp|A7E2M3|EMC10_DANRE ER membrane protein complex subunit 10 OS=Danio rerio GN=emc10 PE=2
           SV=1
          Length = 257

 Score = 30.8 bits (68), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 21/142 (14%)

Query: 65  RRKVSDQDSD-SKIQFSLEHAFGDSDFVPAGTFSARLKTSSHGGQTLTKLRFSRNAFTGE 123
           RR     D+D S     LEH+F + D VP   F  R      GG+    +  S+N  + +
Sbjct: 31  RRSGDAVDTDFSGFSVPLEHSF-EVDDVP--RFRLRGALQFRGGRE-NSVYLSQNQLSEK 86

Query: 124 DKEKFEKLLQDDDFYRIRLPSNTVSPPGRD------YIISSVKARCLPREGLDEHFVIHM 177
           D+   + +   D  YRIR+P  ++    +       Y+ + V+A  L    L +   +H 
Sbjct: 87  DRNTLKDVAAVDGLYRIRVPRVSLQVDRQTERQYEGYLTAFVRACALVESHLSDVITLHT 146

Query: 178 E------GVNILAVNYGAFGAC 193
           +      G++I+ +     G+C
Sbjct: 147 DVSGYVIGISIVTIP----GSC 164


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,927,686
Number of Sequences: 539616
Number of extensions: 3405685
Number of successful extensions: 8602
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 8596
Number of HSP's gapped (non-prelim): 21
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)