Query 028282
Match_columns 211
No_of_seqs 51 out of 53
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 09:06:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028282hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4827 Uncharacterized conser 100.0 1.6E-43 3.5E-48 308.2 3.3 182 24-206 9-200 (279)
2 PF10049 DUF2283: Protein of u 59.4 10 0.00022 25.9 2.6 22 167-188 25-47 (50)
3 PF07172 GRP: Glycine rich pro 57.5 8.6 0.00019 29.9 2.2 15 8-22 6-20 (95)
4 PF11720 Inhibitor_I78: Peptid 54.2 17 0.00037 25.6 3.1 26 162-187 33-59 (60)
5 COG5428 Uncharacterized conser 51.7 17 0.00036 27.5 2.8 24 166-189 25-49 (69)
6 PF01870 Hjc: Archaeal hollida 51.6 52 0.0011 25.2 5.6 39 127-189 5-43 (88)
7 PF14794 DUF4479: Domain of un 50.8 11 0.00025 28.0 1.9 22 116-137 44-65 (73)
8 PRK15188 fimbrial chaperone pr 44.7 21 0.00045 31.6 2.9 19 1-19 1-19 (228)
9 PRK11023 outer membrane lipopr 42.3 16 0.00034 31.0 1.6 110 71-188 44-162 (191)
10 TIGR03300 assembly_YfgL outer 41.9 18 0.00039 32.0 2.0 20 12-31 4-23 (377)
11 PF07504 FTP: Fungalysin/Therm 35.8 44 0.00096 22.2 2.8 17 170-186 30-47 (51)
12 COG1724 Predicted RNA binding 35.6 32 0.0007 25.8 2.2 18 126-143 10-27 (66)
13 PF15051 FAM198: FAM198 protei 33.1 20 0.00044 33.9 1.0 57 120-179 14-86 (326)
14 PHA02781 hypothetical protein; 29.1 59 0.0013 24.7 2.7 18 171-188 6-25 (78)
15 PRK10053 hypothetical protein; 28.6 57 0.0012 27.0 2.8 24 68-91 55-80 (130)
16 PF06776 IalB: Invasion associ 28.2 37 0.0008 26.6 1.6 36 165-200 55-92 (134)
17 PF06819 Arc_PepC: Archaeal Pe 27.9 58 0.0013 26.5 2.7 47 89-135 51-102 (110)
18 PF06543 Lac_bphage_repr: Lact 27.9 53 0.0012 23.4 2.1 22 113-134 24-45 (49)
19 TIGR02052 MerP mercuric transp 26.8 35 0.00075 22.8 1.0 12 1-12 1-12 (92)
20 PF14183 YwpF: YwpF-like prote 26.4 2.2E+02 0.0047 23.9 5.9 54 120-179 46-100 (135)
21 PLN00038 photosystem I reactio 24.9 73 0.0016 27.7 2.9 21 11-31 91-111 (165)
22 COG1930 CbiN ABC-type cobalt t 23.9 81 0.0018 25.3 2.8 10 35-44 27-36 (97)
23 PF08381 BRX: Transcription fa 21.9 86 0.0019 23.0 2.4 28 100-127 18-45 (59)
24 PF05630 NPP1: Necrosis induci 21.8 93 0.002 27.1 3.0 21 171-191 94-116 (206)
25 PRK15037 D-mannonate oxidoredu 20.7 96 0.0021 30.5 3.1 67 126-196 67-136 (486)
26 PF13516 LRR_6: Leucine Rich r 20.4 60 0.0013 18.2 1.1 21 109-129 3-23 (24)
No 1
>KOG4827 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.6e-43 Score=308.23 Aligned_cols=182 Identities=50% Similarity=0.810 Sum_probs=165.9
Q ss_pred ccccccccccccccccccccCCCCCCC------CCCCCCCCCcccccccccCCCCCCCceeEEEeeecCCCCceec-cce
Q 028282 24 SLAFESDELLVDDEEFGLEGGSKPQIK------PHEPAPTRSTTTTTRRKVSDQDSDSKIQFSLEHAFGDSDFVPA-GTF 96 (211)
Q Consensus 24 s~~fqsdell~dd~e~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~~l~f~LEHSf~d~~Ft~R-G~~ 96 (211)
+.+||+||+++||+|||++|+ .+... +++|.+..|..+.|+++.-.++.|.++||+|||+|||.+|.+. |+|
T Consensus 9 ~IAf~~de~ll~ddefgLEga-k~~~TdlY~~~Ssspqqqqq~~~iR~~~~dpTdldkk~QftlEhaFGdkdF~~anGtf 87 (279)
T KOG4827|consen 9 IIAFILDEFLLADDEFGLEGA-KNEFTDLYPLGSSSPQQQQQIEMIRAFDGDPTDLDKKAQFTLEHAFGDKDFEAANGTF 87 (279)
T ss_pred HHHHhccceeecccccccccc-ccccccccccCCCChhhhhhhhhhhhhcCCcccccchhhhhHHhhcccccccccccee
Confidence 568999999999999999999 66543 2222223455555666666679999999999999999999999 999
Q ss_pred eeecccCCCCcccccceeeccCCCCHHHHHHHHHHhhcCCceEEEecCCccCCCCCceEEEeeeccccccCC--CcceEE
Q 028282 97 SARLKTSSHGGQTLTKLRFSRNAFTGEDKEKFEKLLQDDDFYRIRLPSNTVSPPGRDYIISSVKARCLPREG--LDEHFV 174 (211)
Q Consensus 97 ~arlk~s~~g~~tl~~lrlsq~~LSe~e~~kLk~LA~~DGfYRIRvps~vl~p~~~~yV~SsVkAC~L~es~--LsD~it 174 (211)
++|+|+|+||.+++.++|++++-++.+|++.|+.+...|+|||||+|+++.-|+|++||+++|.|||+++.+ ++|++.
T Consensus 88 SaR~ks~shgGkn~~klrf~~~dF~aeekdaF~n~lkgddf~kiqL~s~~i~PpgrefviasV~aRc~p~DGky~dE~fi 167 (279)
T KOG4827|consen 88 SARAKSSSHGGKNFLKLRFDPCDFLAEEKDAFHNFLKGDDFEKIQLHSLTIFPPGREFVIASVAARCDPEDGKYHDEAFI 167 (279)
T ss_pred EEEeecccCCCcceeeeccChhhhhhhHHHHHHHHHhcccHhhhccccceecCCcchhhhhhhheecCcccCccccceee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEeeCcEEEEEEeecc-CCCCCcccccccCCCC
Q 028282 175 IHMEGVNILAVNYGAF-GACSYPRQLKLVSKDP 206 (211)
Q Consensus 175 iHlD~GnVIgVsy~tp-G~C~~~r~l~~~~~~~ 206 (211)
+|+.+.||++++|++| |.|+||||+|+|+||+
T Consensus 168 ~h~egANiLa~s~GsPkGaCqyprqlklpakws 200 (279)
T KOG4827|consen 168 CHDEGANILASSQGSPKGACQYPRQLKLPAKWS 200 (279)
T ss_pred eeccCcceeeeccCCCCccccCchhhcCccccc
Confidence 9999999999999997 9999999999999996
No 2
>PF10049 DUF2283: Protein of unknown function (DUF2283); InterPro: IPR019270 Members of this family of hypothetical proteins have no known function.
Probab=59.42 E-value=10 Score=25.85 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=18.2
Q ss_pred CCCcceEEEEee-CcEEEEEEee
Q 028282 167 EGLDEHFVIHME-GVNILAVNYG 188 (211)
Q Consensus 167 s~LsD~itiHlD-~GnVIgVsy~ 188 (211)
-.+.+.+.++.| .|+|+||++.
T Consensus 25 ~e~~~~iild~d~~G~ivGIEIl 47 (50)
T PF10049_consen 25 EELDDGIILDYDEDGRIVGIEIL 47 (50)
T ss_pred EEecCCEEEEECCCCCEEEEEEE
Confidence 356678999999 6999999975
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=57.46 E-value=8.6 Score=29.95 Aligned_cols=15 Identities=27% Similarity=0.489 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhh
Q 028282 8 FALFLFFFSLLLFCH 22 (211)
Q Consensus 8 ~~~~~~~~~~~~~~~ 22 (211)
|+||+++|+++|+++
T Consensus 6 ~llL~l~LA~lLlis 20 (95)
T PF07172_consen 6 FLLLGLLLAALLLIS 20 (95)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555556666655555
No 4
>PF11720 Inhibitor_I78: Peptidase inhibitor I78 family; InterPro: IPR021719 This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.
Probab=54.25 E-value=17 Score=25.62 Aligned_cols=26 Identities=8% Similarity=0.092 Sum_probs=20.5
Q ss_pred cccccCCCcceEEEEee-CcEEEEEEe
Q 028282 162 RCLPREGLDEHFVIHME-GVNILAVNY 187 (211)
Q Consensus 162 C~L~es~LsD~itiHlD-~GnVIgVsy 187 (211)
+.+...--.|+++|++| .|.|..|+.
T Consensus 33 ~~vTmDyr~dRLnv~~D~~g~I~~v~C 59 (60)
T PF11720_consen 33 DAVTMDYRPDRLNVEVDDDGVITRVRC 59 (60)
T ss_pred CcCcccCCCCcEEEEECCCCcEEEEec
Confidence 34445567899999999 799999875
No 5
>COG5428 Uncharacterized conserved small protein [Function unknown]
Probab=51.68 E-value=17 Score=27.48 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=20.7
Q ss_pred cCCCcceEEEEee-CcEEEEEEeec
Q 028282 166 REGLDEHFVIHME-GVNILAVNYGA 189 (211)
Q Consensus 166 es~LsD~itiHlD-~GnVIgVsy~t 189 (211)
.-.+.|.+.|-.| .|+|+||++..
T Consensus 25 t~e~~edi~Idide~GkV~GiEi~~ 49 (69)
T COG5428 25 TIELGEDILIDIDENGKVIGIEIWN 49 (69)
T ss_pred hhhcCCcEEEEecCCCcEEEEEEEc
Confidence 3468999999999 89999999864
No 6
>PF01870 Hjc: Archaeal holliday junction resolvase (hjc); InterPro: IPR002732 This entry represents Holliday junction resolvases (hjc gene) and related proteins, primarily from archaeal species []. The Holliday junction is an essential intermediate of homologous recombination. Holliday junctions are four-stranded DNA complexes that are formed during recombination and related DNA repair events. In the presence of divalent cations, these junctions exist predominantly as the stacked-X form in which the double-helical segments are coaxially stacked and twisted by 60 degrees in a right-handed direction across the junction cross-over. In this structure, the stacked arms resemble two adjacent double-helices, but are linked at the junction by two common strands that cross-over between the duplexes []. During homologous recombination, genetic information is physically exchanged between parental DNAs via crossing single strands of the same polarity within the four-way Holliday structure. This process is terminated by the endonucleolytic activity of resolvases, which convert the four-way DNA back to two double strands.; PDB: 2WJ0_A 2WIZ_B 2WIW_B 2WCW_C 2WCZ_A 1HH1_A 1GEF_D 1IPI_B 2EO0_B 1OB9_A ....
Probab=51.63 E-value=52 Score=25.21 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=26.4
Q ss_pred HHHHHhhcCCceEEEecCCccCCCCCceEEEeeeccccccCCCcceEEEEeeCcEEEEEEeec
Q 028282 127 KFEKLLQDDDFYRIRLPSNTVSPPGRDYIISSVKARCLPREGLDEHFVIHMEGVNILAVNYGA 189 (211)
Q Consensus 127 kLk~LA~~DGfYRIRvps~vl~p~~~~yV~SsVkAC~L~es~LsD~itiHlD~GnVIgVsy~t 189 (211)
.|.+.+.+.||+-+|+|. +.+. |.|. .++|.+++|..-+
T Consensus 5 el~~~L~~~Gf~v~R~~~----Sg~~------------------DiiA--~~~~~~l~IEvKs 43 (88)
T PF01870_consen 5 ELVKILWERGFAVVRAAG----SGGG------------------DIIA--GKGGRYLAIEVKS 43 (88)
T ss_dssp HHHHHHHHTT-EEEEBSC----CSSS------------------SEEE--EETTEEEEEEEEE
T ss_pred HHHHHHHhCCcEEEEecC----CCCc------------------CEEE--ECCCEEEEEEEee
Confidence 455666689999999993 3211 6666 5678888888754
No 7
>PF14794 DUF4479: Domain of unknown function (DUF4479); PDB: 3BU2_C.
Probab=50.83 E-value=11 Score=28.00 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=14.8
Q ss_pred ccCCCCHHHHHHHHHHhhcCCc
Q 028282 116 SRNAFTGEDKEKFEKLLQDDDF 137 (211)
Q Consensus 116 sq~~LSe~e~~kLk~LA~~DGf 137 (211)
-|..||++++++|.++.+.+||
T Consensus 44 G~V~Lt~eqv~~LN~~l~~~Gf 65 (73)
T PF14794_consen 44 GQVFLTEEQVAKLNQALQKAGF 65 (73)
T ss_dssp ------HHHHHHHHHHHHHTT-
T ss_pred cCEEcCHHHHHHHHHHHHHcCC
Confidence 4667999999999999999998
No 8
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=44.72 E-value=21 Score=31.59 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=15.7
Q ss_pred CccchhHHHHHHHHHHHHH
Q 028282 1 MKKKLPLFALFLFFFSLLL 19 (211)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (211)
|||-.|+|++++++|...+
T Consensus 1 ~~~~~~~~~~~~~~l~~a~ 19 (228)
T PRK15188 1 MKKNVPIFLRLLLLLSAAG 19 (228)
T ss_pred CCccchHHHHHHHHHHHHH
Confidence 8999999999888776654
No 9
>PRK11023 outer membrane lipoprotein; Provisional
Probab=42.25 E-value=16 Score=31.05 Aligned_cols=110 Identities=11% Similarity=0.183 Sum_probs=64.6
Q ss_pred CCCCCceeEEEeeecCCC-CceeccceeeecccCCCCcccccceeeccCCCCHHHHHHHHHHhhcCC-------ceEEEe
Q 028282 71 QDSDSKIQFSLEHAFGDS-DFVPAGTFSARLKTSSHGGQTLTKLRFSRNAFTGEDKEKFEKLLQDDD-------FYRIRL 142 (211)
Q Consensus 71 ~~~d~~l~f~LEHSf~d~-~Ft~RG~~~arlk~s~~g~~tl~~lrlsq~~LSe~e~~kLk~LA~~DG-------fYRIRv 142 (211)
.-.|.++...++.+|... .+.....+... ...+.+-|+..--+++++.+.+++|+.=. .-+|+-
T Consensus 44 ~~dD~~i~~~V~~aL~~~~~l~~~~~I~V~--------v~~G~V~L~G~V~~~~~k~~A~~ia~~v~GV~~V~N~l~V~~ 115 (191)
T PRK11023 44 QVDDGTLELRVNNALSKDEQIKKEARINVT--------AYQGKVLLTGQSPNAELSERAKQIAMGVEGVNEVYNEIRQGQ 115 (191)
T ss_pred eehhHHHHHHHHHHHhhCcccCcCceEEEE--------EECCEEEEEEEeCCHHHHHHHHHHHhcCCCceeecceeeecc
Confidence 345566666666666532 23221122211 12234555677778999999999998721 224444
Q ss_pred cCCccCCCCCceEEEeeeccccccCCCcc-eEEEEeeCcEEEEEEee
Q 028282 143 PSNTVSPPGRDYIISSVKARCLPREGLDE-HFVIHMEGVNILAVNYG 188 (211)
Q Consensus 143 ps~vl~p~~~~yV~SsVkAC~L~es~LsD-~itiHlD~GnVIgVsy~ 188 (211)
|+...+-....++.+-||+--+....++. +|.|.+.+|.|+=...+
T Consensus 116 ~~~~~~~~~D~~It~kik~~L~~~~~v~~~~I~V~t~~G~V~L~G~v 162 (191)
T PRK11023 116 PIGLGTASKDTWITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLV 162 (191)
T ss_pred ccccccccCcHHHHHHHHHHHhcCCCCCcceEEEEEECcEEEEEEEe
Confidence 43333322247788899999888888774 36666667777655444
No 10
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=41.90 E-value=18 Score=32.04 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhccccccccc
Q 028282 12 LFFFSLLLFCHSSLAFESDE 31 (211)
Q Consensus 12 ~~~~~~~~~~~~s~~fqsde 31 (211)
+++++|+.+.+++++||+|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~ 23 (377)
T TIGR03300 4 ALVIALAALLSGCSWFSSKD 23 (377)
T ss_pred HHHHHHHHHHhcccCCCCCC
Confidence 34444433334478999984
No 11
>PF07504 FTP: Fungalysin/Thermolysin Propeptide Motif; InterPro: IPR011096 The FTP domain is found in the propeptide region of bacterial and fungal metallopeptidases belonging to MEROPS peptidase families M4 and M36 respectively. In bacteria the FTP domain is N-terminal to this entry, the PepSY domain; in fungi the M36 peptidases do not contain the PepSY domain. Propeptide swapping experiments have shown that the propeptides of the M4 and M36 families are not functionally interchangeable []. The function of the propeptide in M36 peptidases has not been described, but it is likely, as in other related peptidases, to have targeting, chaperone activity and to inhibit peptidase activity, so as to prevent premature activation [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding; PDB: 3NQY_A 3NQZ_A.
Probab=35.81 E-value=44 Score=22.21 Aligned_cols=17 Identities=18% Similarity=0.569 Sum_probs=12.0
Q ss_pred cceEEEEee-CcEEEEEE
Q 028282 170 DEHFVIHME-GVNILAVN 186 (211)
Q Consensus 170 sD~itiHlD-~GnVIgVs 186 (211)
...+.+|+| .|++.+|+
T Consensus 30 g~~~~v~~~~~g~v~sv~ 47 (51)
T PF07504_consen 30 GGELIVHVDKDGKVVSVN 47 (51)
T ss_dssp S--EEEEE-ETTEEEEEE
T ss_pred CCEEEEEEcCCCCEEEEe
Confidence 346889999 79999986
No 12
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=35.59 E-value=32 Score=25.78 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=15.2
Q ss_pred HHHHHHhhcCCceEEEec
Q 028282 126 EKFEKLLQDDDFYRIRLP 143 (211)
Q Consensus 126 ~kLk~LA~~DGfYRIRvp 143 (211)
.++.++++.||||.+|..
T Consensus 10 ke~ik~Le~~Gf~~vrqk 27 (66)
T COG1724 10 KEVIKALEKDGFQLVRQK 27 (66)
T ss_pred HHHHHHHHhCCcEEEEee
Confidence 456678999999999987
No 13
>PF15051 FAM198: FAM198 protein
Probab=33.13 E-value=20 Score=33.92 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHhhcCCceEEEecCCccCCCCCceEEE---------ee----ec-cccccC--CCcceEEEEeeC
Q 028282 120 FTGEDKEKFEKLLQDDDFYRIRLPSNTVSPPGRDYIIS---------SV----KA-RCLPRE--GLDEHFVIHMEG 179 (211)
Q Consensus 120 LSe~e~~kLk~LA~~DGfYRIRvps~vl~p~~~~yV~S---------sV----kA-C~L~es--~LsD~itiHlD~ 179 (211)
||++|+.+++=||...=.-.-|+|+.-.. ..-+.+ .. .- |.|.+. .+.|+|++|+|+
T Consensus 14 fS~~Di~~MrlLAd~~V~~~~~vp~~gqv---~ll~l~~~~~~~~~~~~~~C~~~~CGLiKrp~D~~EVfAFHLDR 86 (326)
T PF15051_consen 14 FSEDDIRKMRLLADGEVVSKARVPAHGQV---LLLVLEKDGDGSPPGSSPRCGPGLCGLIKRPLDMSEVFAFHLDR 86 (326)
T ss_pred CCHHHHHHHHHhcCCceeeeeecCCCCCc---ceEEEecccCCCCCCcccccCCCceeeECCCCcHHHHHHHHHHH
Confidence 99999999999998877777777753100 011111 11 22 777765 567999999994
No 14
>PHA02781 hypothetical protein; Provisional
Probab=29.08 E-value=59 Score=24.69 Aligned_cols=18 Identities=17% Similarity=0.541 Sum_probs=16.0
Q ss_pred ceEEEEeeC--cEEEEEEee
Q 028282 171 EHFVIHMEG--VNILAVNYG 188 (211)
Q Consensus 171 D~itiHlD~--GnVIgVsy~ 188 (211)
|.|-|.+|+ |||+-|+|-
T Consensus 6 dkikitvdskignvvtisyn 25 (78)
T PHA02781 6 DKIKITVDSKIGNVVTISYN 25 (78)
T ss_pred ceEEEEeecccCcEEEEEee
Confidence 789999994 999999995
No 15
>PRK10053 hypothetical protein; Provisional
Probab=28.63 E-value=57 Score=26.96 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=14.6
Q ss_pred cCCCCCCCceeEE--EeeecCCCCce
Q 028282 68 VSDQDSDSKIQFS--LEHAFGDSDFV 91 (211)
Q Consensus 68 ~~~~~~d~~l~f~--LEHSf~d~~Ft 91 (211)
+.+..-|.++.++ |...+++..|.
T Consensus 55 a~~~~Dd~~V~L~G~Iv~~lg~d~Y~ 80 (130)
T PRK10053 55 AKTMHDGATVSLRGNLIDHKGDDRYV 80 (130)
T ss_pred hhcCcCCCeEEEEEEEEEEeCCceEE
Confidence 4455666776664 66777766443
No 16
>PF06776 IalB: Invasion associated locus B (IalB) protein; InterPro: IPR010642 This family consists of several invasion associated locus B (IalB) proteins and related sequences. IalB is known to be a major virulence factor in Bartonella bacilliformis where it was shown to have a direct role in human erythrocyte parasitism. IalB is up-regulated in response to environmental cues signalling vector-to-host transmission. Such environmental cues would include, but not be limited to, temperature, pH, oxidative stress, and haemin limitation. It is also thought that IalB would aide B. bacilliformis survival under stress-inducing environmental conditions []. The role of this protein in other bacterial species is unknown.; PDB: 3DTD_L.
Probab=28.16 E-value=37 Score=26.56 Aligned_cols=36 Identities=8% Similarity=0.084 Sum_probs=24.5
Q ss_pred ccCCCcceEEEEeeCcEEEEEEeec--cCCCCCccccc
Q 028282 165 PREGLDEHFVIHMEGVNILAVNYGA--FGACSYPRQLK 200 (211)
Q Consensus 165 ~es~LsD~itiHlD~GnVIgVsy~t--pG~C~~~r~l~ 200 (211)
+...|..-+.|.+|+++++.+.|.+ +.+|....+++
T Consensus 55 lg~~l~~gv~l~vD~~~~~~~~~~~C~~~gC~a~~~l~ 92 (134)
T PF06776_consen 55 LGVLLPPGVRLQVDDGKPIRLPFQTCLPNGCIAEAPLD 92 (134)
T ss_dssp SSB-TTS-EEEEETTSSEEEE---EEETTEEEEEEEE-
T ss_pred cccccCCCeEEEECCCccceeeeEEECCCccEEEeecC
Confidence 4667888899999998899999987 88997665543
No 17
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=27.94 E-value=58 Score=26.48 Aligned_cols=47 Identities=21% Similarity=0.302 Sum_probs=29.5
Q ss_pred Cceeccceeeeccc----CCCCccc-ccceeeccCCCCHHHHHHHHHHhhcC
Q 028282 89 DFVPAGTFSARLKT----SSHGGQT-LTKLRFSRNAFTGEDKEKFEKLLQDD 135 (211)
Q Consensus 89 ~Ft~RG~~~arlk~----s~~g~~t-l~~lrlsq~~LSe~e~~kLk~LA~~D 135 (211)
.++.|-++.=|+|. ..-+..+ -.-++.+...||++|+++||+|..++
T Consensus 51 v~~d~~~~~~r~k~~l~~~~~~~l~g~~i~~~~~EGLs~E~IE~Lk~Lv~eG 102 (110)
T PF06819_consen 51 VYRDRSSFFKRFKFALKTEDGSALTGEKIISTDAEGLSKEDIEKLKKLVEEG 102 (110)
T ss_pred EEEecccHHHHHHHHHHhcccccccCCeEEeccccCCCHHHHHHHHHHHHcC
Confidence 56666666656653 1111111 11245578889999999999998865
No 18
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=27.88 E-value=53 Score=23.39 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.1
Q ss_pred eeeccCCCCHHHHHHHHHHhhc
Q 028282 113 LRFSRNAFTGEDKEKFEKLLQD 134 (211)
Q Consensus 113 lrlsq~~LSe~e~~kLk~LA~~ 134 (211)
+++...|||+++++.++.+...
T Consensus 24 vSf~GrPltdevK~a~k~i~~~ 45 (49)
T PF06543_consen 24 VSFDGRPLTDEVKEAMKLIFGK 45 (49)
T ss_pred eeeCCeeCCHHHHHHHHHHHhh
Confidence 5788999999999999988654
No 19
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=26.76 E-value=35 Score=22.85 Aligned_cols=12 Identities=58% Similarity=0.797 Sum_probs=7.5
Q ss_pred CccchhHHHHHH
Q 028282 1 MKKKLPLFALFL 12 (211)
Q Consensus 1 ~~~~~~~~~~~~ 12 (211)
||+++-||++|.
T Consensus 1 ~~~~~~~~~~~~ 12 (92)
T TIGR02052 1 MKKLATLLALFV 12 (92)
T ss_pred ChhHHHHHHHHH
Confidence 677776665543
No 20
>PF14183 YwpF: YwpF-like protein
Probab=26.44 E-value=2.2e+02 Score=23.92 Aligned_cols=54 Identities=30% Similarity=0.413 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHhhcCCceEEEecCCccCCCCC-ceEEEeeeccccccCCCcceEEEEeeC
Q 028282 120 FTGEDKEKFEKLLQDDDFYRIRLPSNTVSPPGR-DYIISSVKARCLPREGLDEHFVIHMEG 179 (211)
Q Consensus 120 LSe~e~~kLk~LA~~DGfYRIRvps~vl~p~~~-~yV~SsVkAC~L~es~LsD~itiHlD~ 179 (211)
.+.+.+.-|+++.+.+....|||. ++.|+.. ..+.+.|+.- ..|+++|.|+++|
T Consensus 46 i~~~~~~~f~~~~~~~~~~~i~vv--IT~~~NdPA~f~~~v~~i----~~l~~~iSVll~G 100 (135)
T PF14183_consen 46 ISKEYYEFFEEYQQSQTELDIRVV--ITRPSNDPATFIATVKSI----TELEEHISVLLEG 100 (135)
T ss_pred EchhhHHHHHHHHhCCcEEEEEEE--EcCCCCCCcEEEEEEEEE----EEcCCceEEEEEE
Confidence 678899999999999999999998 6676543 5666666643 3468999999985
No 21
>PLN00038 photosystem I reaction center subunit XI (PsaL); Provisional
Probab=24.88 E-value=73 Score=27.68 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhccccccccc
Q 028282 11 FLFFFSLLLFCHSSLAFESDE 31 (211)
Q Consensus 11 ~~~~~~~~~~~~~s~~fqsde 31 (211)
+++++++||..-++.+||.+|
T Consensus 91 lv~IlT~~Ls~Yg~~~f~~~~ 111 (165)
T PLN00038 91 LVLILTLCLTIYGAASFQEGE 111 (165)
T ss_pred HHHHHHHHHHHhcccccCCCC
Confidence 345566665444466788754
No 22
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=23.93 E-value=81 Score=25.27 Aligned_cols=10 Identities=50% Similarity=0.780 Sum_probs=7.8
Q ss_pred cccccccccC
Q 028282 35 DDEEFGLEGG 44 (211)
Q Consensus 35 dd~e~~~~g~ 44 (211)
+|.|||+.-+
T Consensus 27 ~~ge~gGaD~ 36 (97)
T COG1930 27 TDGEFGGADG 36 (97)
T ss_pred ccccccCCcc
Confidence 5889988766
No 23
>PF08381 BRX: Transcription factor regulating root and shoot growth via Pin3; InterPro: IPR013591 This is a short domain, approximately 35 residues in length that is found near the C terminus in a number of plant proteins, being repeated in some members. It is found in Brevis radix-like proteins. These may act as a regulator of cell proliferation and elongation in the root []. It is also found in proteins annotated as involved in disease resistance and in the regulation of chromosome condensation, which also contain other domains with varied functions, such as TIR (IPR000157 from INTERPRO) and FYVE (IPR000306 from INTERPRO) respectively.
Probab=21.92 E-value=86 Score=22.96 Aligned_cols=28 Identities=36% Similarity=0.645 Sum_probs=22.3
Q ss_pred cccCCCCcccccceeeccCCCCHHHHHH
Q 028282 100 LKTSSHGGQTLTKLRFSRNAFTGEDKEK 127 (211)
Q Consensus 100 lk~s~~g~~tl~~lrlsq~~LSe~e~~k 127 (211)
+.+.++|.-.|..+|||+.-+++.+.++
T Consensus 18 l~~~p~G~~~LkRVRFSR~~F~e~qA~~ 45 (59)
T PF08381_consen 18 LVSLPDGGNDLKRVRFSRERFSEWQAER 45 (59)
T ss_pred EEECCCCCeeEEEEEEhhhhcCHHHHHH
Confidence 4456677788999999999999877654
No 24
>PF05630 NPP1: Necrosis inducing protein (NPP1); InterPro: IPR008701 This family consists of several NPP1-like necrosis inducing proteins from oomycetes, fungi and bacteria. Infiltration of NPP1 into leaves of Arabidopsis thaliana plants result in transcript accumulation of pathogenesis-related (PR) genes, production of ROS and ethylene, callose apposition, and HR-like cell death [].; PDB: 3ST1_A 3GNZ_P 3GNU_P.
Probab=21.77 E-value=93 Score=27.10 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=16.3
Q ss_pred ceEEEEeeC--cEEEEEEeeccC
Q 028282 171 EHFVIHMEG--VNILAVNYGAFG 191 (211)
Q Consensus 171 D~itiHlD~--GnVIgVsy~tpG 191 (211)
|+++|++|+ +.|++|+++.-|
T Consensus 94 E~vVVWidn~~~~i~~Vs~S~hg 116 (206)
T PF05630_consen 94 ENVVVWIDNNPSTILGVSASAHG 116 (206)
T ss_dssp EEEEEEECTTT--EEEEEEEETT
T ss_pred eEEEEEEcCCCCceEEEEeeecC
Confidence 688999996 899999998744
No 25
>PRK15037 D-mannonate oxidoreductase; Provisional
Probab=20.68 E-value=96 Score=30.51 Aligned_cols=67 Identities=16% Similarity=0.179 Sum_probs=50.2
Q ss_pred HHHHHHhhcCCceEEEecCCccCCCC-CceEEEeeeccccccCC-CcceEEEEee-CcEEEEEEeeccCCCCCc
Q 028282 126 EKFEKLLQDDDFYRIRLPSNTVSPPG-RDYIISSVKARCLPREG-LDEHFVIHME-GVNILAVNYGAFGACSYP 196 (211)
Q Consensus 126 ~kLk~LA~~DGfYRIRvps~vl~p~~-~~yV~SsVkAC~L~es~-LsD~itiHlD-~GnVIgVsy~tpG~C~~~ 196 (211)
...+.|.+.||+|++-+-. .++ ...|+++|.-+..+... ....+..-.| .-.||..++--.|-|.-+
T Consensus 67 ~~~~~L~~QdglYtv~~~g----~~~~~~~vi~si~~~l~~~~d~~~~vl~~~a~p~~~iVt~TvTE~GY~~~~ 136 (486)
T PRK15037 67 VLIENLKKQQLLYTVAEKG----AESTELKIIGSMKEALHPEIDGCEGILNAMARPQTAIVSLTVTEKGYCADA 136 (486)
T ss_pred HHHHHHHhcCCeeEEEEec----CCCceEEEEeEhhhhhcCCccCHHHHHHHhcCCCEEEEEEccCCcceeecC
Confidence 4678888999999997763 222 46788888888776655 7778888888 788888887437777543
No 26
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=20.35 E-value=60 Score=18.23 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=15.6
Q ss_pred cccceeeccCCCCHHHHHHHH
Q 028282 109 TLTKLRFSRNAFTGEDKEKFE 129 (211)
Q Consensus 109 tl~~lrlsq~~LSe~e~~kLk 129 (211)
+++.|.++.|+++++....|-
T Consensus 3 ~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 3 NLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp T-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCEEEccCCcCCHHHHHHhC
Confidence 477899999999998877663
Done!