Query 028282
Match_columns 211
No_of_seqs 51 out of 53
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 14:50:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h6r_A Clitocypin analog; cyst 32.9 20 0.00069 29.4 2.0 10 134-143 5-14 (152)
2 1x93_A Hypothetical protein HP 27.0 25 0.00086 24.4 1.4 18 118-135 6-23 (55)
3 2ba3_A NIKA; dimer, bacterial 24.7 24 0.00083 22.5 0.9 19 118-136 20-38 (51)
4 1e5p_A Aphrodisin; lipocalin, 24.6 46 0.0016 24.5 2.6 22 116-137 113-135 (151)
5 3tkz_A Tyrosine-protein phosph 23.6 1.8E+02 0.006 20.6 5.6 51 119-179 13-63 (109)
6 4g06_A Uncharacterized protein 22.5 35 0.0012 25.3 1.5 20 116-135 60-79 (79)
7 1lj8_A Mannitol dehydrogenase; 22.4 26 0.00088 32.8 1.0 70 121-194 66-138 (493)
8 2ra6_A Trichosurin; lipocalin, 21.8 62 0.0021 24.2 2.9 22 116-137 130-152 (166)
9 1dzk_A PIG OBP, odorant-bindin 21.5 58 0.002 24.0 2.6 22 116-137 119-141 (157)
10 2xst_A Lipocalin 15; transport 21.0 61 0.0021 23.6 2.7 23 115-137 123-146 (161)
11 1epa_A Epididymal retinoic aci 20.8 60 0.0021 24.0 2.6 23 116-138 118-141 (164)
12 1exs_A Beta-lactoglobulin; lip 20.7 67 0.0023 23.8 2.9 24 116-139 123-147 (160)
13 2l3a_A Uncharacterized protein 20.7 44 0.0015 25.0 1.7 20 116-135 55-74 (82)
14 2hlv_A Odorant-binding protein 20.7 61 0.0021 24.1 2.6 23 116-138 120-143 (160)
15 1bj7_A D 2; allergen, lipocali 20.6 46 0.0016 24.7 1.9 22 116-137 118-140 (156)
No 1
>3h6r_A Clitocypin analog; cysteine proteinase inhibitor, kunitz inhibitor, beta trefoil; 1.95A {Clitocybe nebularis} PDB: 3h6r_B 3h6s_E
Probab=32.88 E-value=20 Score=29.44 Aligned_cols=10 Identities=40% Similarity=0.743 Sum_probs=8.9
Q ss_pred cCCceEEEec
Q 028282 134 DDDFYRIRLP 143 (211)
Q Consensus 134 ~DGfYRIRvp 143 (211)
.||+||||+-
T Consensus 5 ~dG~YtLra~ 14 (152)
T 3h6r_A 5 EDGTYRLRAV 14 (152)
T ss_dssp CSEEEEEEEE
T ss_pred cCceEEEEec
Confidence 5999999994
No 2
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=26.97 E-value=25 Score=24.36 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHHhhcC
Q 028282 118 NAFTGEDKEKFEKLLQDD 135 (211)
Q Consensus 118 ~~LSe~e~~kLk~LA~~D 135 (211)
--||+||.++|++||.+.
T Consensus 6 ~Y~SkEey~~L~klA~eE 23 (55)
T 1x93_A 6 LYFSDEQYQKLEKMANEE 23 (55)
T ss_dssp EEECHHHHHHHHHHHHHT
T ss_pred EEecHHHHHHHHHHHHHH
Confidence 358999999999999764
No 3
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=24.66 E-value=24 Score=22.45 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=16.8
Q ss_pred CCCCHHHHHHHHHHhhcCC
Q 028282 118 NAFTGEDKEKFEKLLQDDD 136 (211)
Q Consensus 118 ~~LSe~e~~kLk~LA~~DG 136 (211)
..||++|.+.|++.|+..|
T Consensus 20 vRlt~eE~~~l~~~A~~~g 38 (51)
T 2ba3_A 20 LRFSPVEDETIRKKAEDSG 38 (51)
T ss_dssp EEECHHHHHHHHHHHHHHT
T ss_pred EEECHHHHHHHHHHHHHhC
Confidence 4589999999999999876
No 4
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=24.58 E-value=46 Score=24.49 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=19.8
Q ss_pred ccCC-CCHHHHHHHHHHhhcCCc
Q 028282 116 SRNA-FTGEDKEKFEKLLQDDDF 137 (211)
Q Consensus 116 sq~~-LSe~e~~kLk~LA~~DGf 137 (211)
+|.| ++++.+++|+++|+.-|+
T Consensus 113 sR~~~l~~e~~~~f~~~~~~~G~ 135 (151)
T 1e5p_A 113 GKGNALTPEENEILVQFAHEKKI 135 (151)
T ss_dssp ESSSCCCHHHHHHHHHHHHHTTC
T ss_pred ecCCCCCHHHHHHHHHHHHHcCC
Confidence 6775 999999999999999886
No 5
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain, protein protein interactions, PTR residues, HYDR peptide complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A* 1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Probab=23.65 E-value=1.8e+02 Score=20.62 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEecCCccCCCCCceEEEeeeccccccCCCcceEEEEeeC
Q 028282 119 AFTGEDKEKFEKLLQDDDFYRIRLPSNTVSPPGRDYIISSVKARCLPREGLDEHFVIHMEG 179 (211)
Q Consensus 119 ~LSe~e~~kLk~LA~~DGfYRIRvps~vl~p~~~~yV~SsVkAC~L~es~LsD~itiHlD~ 179 (211)
.+|-+|.+++=.-...||.|-||-... . .+.|++|... .+---|+-|.-++
T Consensus 13 ~isr~~Ae~lL~~~~~~G~FLVR~S~~--~--~g~y~LSv~~------~~~v~H~~I~~~~ 63 (109)
T 3tkz_A 13 NITGVEAENLLLTRGVDGSFLARPSKS--N--PGDFTLSVRR------NGAVTHIKIQNTG 63 (109)
T ss_dssp TCCHHHHHHHHHHHCCTTEEEEEECSS--S--TTCEEEEEEE------TTEEEEEEEEECS
T ss_pred CCCHHHHHHHHhcCCCCCEEEEEecCC--C--CCCEEEEEEE------CCEEEEEEEEeCC
Confidence 456777775432222699999998732 2 2689887653 2223455555553
No 6
>4g06_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium (NESG); HET: DT; 2.90A {Streptococcus pneumoniae}
Probab=22.51 E-value=35 Score=25.31 Aligned_cols=20 Identities=5% Similarity=0.175 Sum_probs=16.6
Q ss_pred ccCCCCHHHHHHHHHHhhcC
Q 028282 116 SRNAFTGEDKEKFEKLLQDD 135 (211)
Q Consensus 116 sq~~LSe~e~~kLk~LA~~D 135 (211)
-..+||.+|..+|++++..+
T Consensus 60 KGITLT~eE~~~L~~~L~~~ 79 (79)
T 4g06_A 60 KGITLSNEEFQTMVDAFKGN 79 (79)
T ss_dssp CCEEECHHHHHHHHHHHHHC
T ss_pred CccccCHHHHHHHHHHHccC
Confidence 35679999999999998753
No 7
>1lj8_A Mannitol dehydrogenase; oxidoreductase, NAD, long-chain dehydrogenase; HET: NAD; 1.70A {Pseudomonas fluorescens} SCOP: a.100.1.9 c.2.1.6 PDB: 1m2w_A*
Probab=22.41 E-value=26 Score=32.82 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHhhcCCceEEEecCCccCCCC--CceEEEeeeccccccCCCcceEEEEee-CcEEEEEEeeccCCCC
Q 028282 121 TGEDKEKFEKLLQDDDFYRIRLPSNTVSPPG--RDYIISSVKARCLPREGLDEHFVIHME-GVNILAVNYGAFGACS 194 (211)
Q Consensus 121 Se~e~~kLk~LA~~DGfYRIRvps~vl~p~~--~~yV~SsVkAC~L~es~LsD~itiHlD-~GnVIgVsy~tpG~C~ 194 (211)
...+....+.|.+.||+|+|.+-. ++| ..-|+++|.++.-+..+....+..-.| .-.||..++--.|-|.
T Consensus 66 ~~~~~~~~d~L~~qd~lYtv~~~~----~~g~~~~~vI~si~~~l~~~~d~~~v~~~~a~p~l~iVt~tvTE~Gy~~ 138 (493)
T 1lj8_A 66 RSEDRKARDDLAGQDYLFTLYELG----DTDDTEVRVIGSISDMLLAEDSAQALIDKLASPEIRIVSLTITEGGYCI 138 (493)
T ss_dssp STTHHHHHHHHHTTTTCEEEEECC----SSCCCCEEEECCEEEEEEGGGCHHHHHHHHTSTTCCEEEECCCTTTTCE
T ss_pred CCccHHHHHHHHhcCCeeEEEEec----CCCCeeEEEEeEhhhhhcCccCHHHHHHHHhCCCceEEEEecCccceee
Confidence 344545667789999999998753 434 577899999987666677777777777 6788988884477774
No 8
>2ra6_A Trichosurin; lipocalin, beta barrel, glycoprotein, MILK protein, secreted, transport, transport protein; 1.50A {Trichosurus vulpecula} PDB: 2r73_A 2r74_A
Probab=21.84 E-value=62 Score=24.17 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.6
Q ss_pred ccCC-CCHHHHHHHHHHhhcCCc
Q 028282 116 SRNA-FTGEDKEKFEKLLQDDDF 137 (211)
Q Consensus 116 sq~~-LSe~e~~kLk~LA~~DGf 137 (211)
+|.| ++++.+++|+++|+.-|+
T Consensus 130 sR~~~~~~e~~~~f~~~~~~~G~ 152 (166)
T 2ra6_A 130 GRTPNLSNEIKKRFEEDFMNRGF 152 (166)
T ss_dssp ESSSCCCHHHHHHHHHHHHTTTC
T ss_pred eCCCCCCHHHHHHHHHHHHHcCC
Confidence 7764 999999999999999885
No 9
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=21.53 E-value=58 Score=24.04 Aligned_cols=22 Identities=18% Similarity=0.496 Sum_probs=19.9
Q ss_pred ccC-CCCHHHHHHHHHHhhcCCc
Q 028282 116 SRN-AFTGEDKEKFEKLLQDDDF 137 (211)
Q Consensus 116 sq~-~LSe~e~~kLk~LA~~DGf 137 (211)
+|. .++++.+++|+++|+.-|+
T Consensus 119 sR~~~~~~e~~~~f~~~~~~~G~ 141 (157)
T 1dzk_A 119 GKGTDIEDQDLEKFKEVTRENGI 141 (157)
T ss_dssp ESSSCCCHHHHHHHHHHHHHTTC
T ss_pred ecCCCCCHHHHHHHHHHHHHcCC
Confidence 777 4999999999999999886
No 10
>2xst_A Lipocalin 15; transport protein, LCN15, MSFL2541; 1.63A {Homo sapiens}
Probab=21.02 E-value=61 Score=23.61 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=20.1
Q ss_pred eccCC-CCHHHHHHHHHHhhcCCc
Q 028282 115 FSRNA-FTGEDKEKFEKLLQDDDF 137 (211)
Q Consensus 115 lsq~~-LSe~e~~kLk~LA~~DGf 137 (211)
++|.+ ++++.+++|+++|+.-|+
T Consensus 123 lsR~~~~~~~~~~~~~~~~~~~G~ 146 (161)
T 2xst_A 123 YSRTQDVSPQALKSFQDFYPTLGL 146 (161)
T ss_dssp EESSSSCCHHHHHHHHHHGGGGTC
T ss_pred EccCCCCCHHHHHHHHHHHHHcCC
Confidence 37775 899999999999999886
No 11
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A*
Probab=20.77 E-value=60 Score=23.96 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.4
Q ss_pred ccCC-CCHHHHHHHHHHhhcCCce
Q 028282 116 SRNA-FTGEDKEKFEKLLQDDDFY 138 (211)
Q Consensus 116 sq~~-LSe~e~~kLk~LA~~DGfY 138 (211)
+|.+ ++++.+++|+++|+.-|+=
T Consensus 118 sR~~~l~~~~~~~~~~~~~~~G~~ 141 (164)
T 1epa_A 118 SRSLDDNGEALYNFRKITSDHGFS 141 (164)
T ss_dssp ESCSSCCHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCC
Confidence 7775 8999999999999999873
No 12
>1exs_A Beta-lactoglobulin; lipocalin fold, lipid-binding protein; 2.39A {Sus scrofa} SCOP: b.60.1.1
Probab=20.73 E-value=67 Score=23.84 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.0
Q ss_pred ccCC-CCHHHHHHHHHHhhcCCceE
Q 028282 116 SRNA-FTGEDKEKFEKLLQDDDFYR 139 (211)
Q Consensus 116 sq~~-LSe~e~~kLk~LA~~DGfYR 139 (211)
+|.+ ++++.+++|+++|+.-|+-.
T Consensus 123 sR~~~~~~e~~~~f~~~~~~~G~~~ 147 (160)
T 1exs_A 123 ARTLEVDDQIREKFEDALKTLSVPM 147 (160)
T ss_dssp ESSSCCCHHHHHHHHHHHTTSSSCE
T ss_pred ecCCCCCHHHHHHHHHHHHhcCCCc
Confidence 6775 99999999999999998755
No 13
>2l3a_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Streptococcus pneumoniae} PDB: 3obh_A*
Probab=20.72 E-value=44 Score=24.98 Aligned_cols=20 Identities=5% Similarity=0.175 Sum_probs=17.2
Q ss_pred ccCCCCHHHHHHHHHHhhcC
Q 028282 116 SRNAFTGEDKEKFEKLLQDD 135 (211)
Q Consensus 116 sq~~LSe~e~~kLk~LA~~D 135 (211)
-..+||.+|..+|++++..+
T Consensus 55 KGITLT~eE~~~L~~~L~~~ 74 (82)
T 2l3a_A 55 KGITLSNEEFQTMVDAFKGN 74 (82)
T ss_dssp CCEEECHHHHHHHHHHHHSS
T ss_pred CcccccHHHHHHHHHHHHHH
Confidence 35679999999999999876
No 14
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=20.69 E-value=61 Score=24.14 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=20.6
Q ss_pred ccC-CCCHHHHHHHHHHhhcCCce
Q 028282 116 SRN-AFTGEDKEKFEKLLQDDDFY 138 (211)
Q Consensus 116 sq~-~LSe~e~~kLk~LA~~DGfY 138 (211)
+|. .++++.+++|+++|+.-|+-
T Consensus 120 sR~~~~~~e~~~~f~~~~~~~G~~ 143 (160)
T 2hlv_A 120 VKGLNVEDEDLEKFWKLTEDKGID 143 (160)
T ss_dssp ECSSSCCHHHHHHHHHHHHHTTCC
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCC
Confidence 776 49999999999999999975
No 15
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=20.56 E-value=46 Score=24.70 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.8
Q ss_pred ccCC-CCHHHHHHHHHHhhcCCc
Q 028282 116 SRNA-FTGEDKEKFEKLLQDDDF 137 (211)
Q Consensus 116 sq~~-LSe~e~~kLk~LA~~DGf 137 (211)
+|.| ++++.+++|+++|+.-|+
T Consensus 118 sR~~~l~~e~~~~f~~~~~~~G~ 140 (156)
T 1bj7_A 118 AKGTSFTPEELEKYQQLNSERGV 140 (156)
T ss_dssp ESSSCCCHHHHHHHHHHHHHHTC
T ss_pred ecCCCCCHHHHHHHHHHHHHcCC
Confidence 7775 999999999999998886
Done!