Query 028283
Match_columns 211
No_of_seqs 144 out of 1895
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 5.8E-44 1.3E-48 253.8 21.6 188 2-189 5-193 (205)
2 KOG0098 GTPase Rab2, small G p 100.0 9.2E-42 2E-46 240.0 21.5 189 1-189 1-190 (216)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 2.1E-41 4.6E-46 239.8 19.0 198 4-211 3-200 (200)
4 KOG0078 GTP-binding protein SE 100.0 4.6E-40 9.9E-45 237.1 22.8 176 2-177 8-183 (207)
5 PLN03108 Rab family protein; P 100.0 6.9E-39 1.5E-43 241.1 26.8 210 1-210 1-210 (210)
6 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.1E-39 2.4E-44 231.2 20.4 168 5-172 21-189 (221)
7 KOG0080 GTPase Rab18, small G 100.0 7.6E-40 1.6E-44 224.9 18.7 200 3-211 8-208 (209)
8 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.9E-39 4.1E-44 233.0 20.2 210 2-211 10-222 (222)
9 KOG0086 GTPase Rab4, small G p 100.0 1.9E-38 4.1E-43 216.4 17.7 208 2-209 5-212 (214)
10 PLN03110 Rab GTPase; Provision 100.0 5.4E-37 1.2E-41 231.7 26.8 207 3-211 9-215 (216)
11 KOG0091 GTPase Rab39, small G 100.0 4.5E-38 9.8E-43 216.8 17.0 206 3-211 5-213 (213)
12 cd04121 Rab40 Rab40 subfamily. 100.0 1.5E-36 3.3E-41 224.1 24.5 170 2-172 2-171 (189)
13 cd04120 Rab12 Rab12 subfamily. 100.0 9.2E-36 2E-40 222.0 25.5 165 7-171 1-166 (202)
14 cd04110 Rab35 Rab35 subfamily. 100.0 9.2E-36 2E-40 222.4 25.6 178 2-180 2-179 (199)
15 KOG0095 GTPase Rab30, small G 100.0 4.9E-37 1.1E-41 208.8 15.5 175 2-176 3-177 (213)
16 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.5E-35 3.3E-40 221.7 24.7 173 7-179 1-179 (201)
17 cd04111 Rab39 Rab39 subfamily. 100.0 3.7E-35 8E-40 220.8 25.8 189 5-193 1-191 (211)
18 KOG0079 GTP-binding protein H- 100.0 7.1E-37 1.5E-41 207.5 14.5 169 2-171 4-172 (198)
19 KOG0394 Ras-related GTPase [Ge 100.0 3.4E-36 7.3E-41 211.5 16.8 169 5-173 8-183 (210)
20 cd04125 RabA_like RabA-like su 100.0 1.5E-34 3.3E-39 214.1 25.0 170 7-176 1-170 (188)
21 cd04126 Rab20 Rab20 subfamily. 100.0 6.8E-35 1.5E-39 219.6 23.2 187 7-210 1-220 (220)
22 cd04144 Ras2 Ras2 subfamily. 100.0 6.3E-35 1.4E-39 216.5 22.5 167 8-175 1-170 (190)
23 cd04122 Rab14 Rab14 subfamily. 100.0 1.2E-34 2.5E-39 210.6 23.2 164 6-169 2-165 (166)
24 KOG0093 GTPase Rab3, small G p 100.0 1.4E-35 2.9E-40 201.1 16.7 173 2-174 17-189 (193)
25 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.8E-34 6.1E-39 217.5 25.1 168 4-173 11-193 (232)
26 PTZ00369 Ras-like protein; Pro 100.0 1.6E-34 3.5E-39 214.1 23.0 170 4-174 3-173 (189)
27 cd04109 Rab28 Rab28 subfamily. 100.0 4.5E-34 9.8E-39 215.7 25.7 164 7-170 1-168 (215)
28 cd04112 Rab26 Rab26 subfamily. 100.0 2.8E-34 6E-39 213.2 23.5 165 7-171 1-166 (191)
29 cd01867 Rab8_Rab10_Rab13_like 100.0 2.9E-34 6.3E-39 208.7 23.0 166 4-169 1-166 (167)
30 KOG0097 GTPase Rab14, small G 100.0 9.2E-35 2E-39 196.2 18.6 207 2-209 7-213 (215)
31 cd04127 Rab27A Rab27a subfamil 100.0 5.6E-34 1.2E-38 209.6 22.8 168 3-170 1-179 (180)
32 cd01866 Rab2 Rab2 subfamily. 100.0 1.6E-33 3.5E-38 205.0 23.8 167 3-169 1-167 (168)
33 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.3E-33 2.8E-38 205.0 23.0 164 5-168 1-164 (166)
34 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 8.1E-34 1.8E-38 208.6 22.1 163 4-168 3-180 (182)
35 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.1E-33 2.5E-38 206.5 22.3 166 6-172 2-168 (172)
36 cd01865 Rab3 Rab3 subfamily. 100.0 3.4E-33 7.4E-38 202.7 23.4 162 7-168 2-163 (165)
37 cd04117 Rab15 Rab15 subfamily. 100.0 2.3E-33 5E-38 202.8 22.3 160 7-166 1-160 (161)
38 cd04133 Rop_like Rop subfamily 100.0 1.5E-33 3.2E-38 206.1 21.0 159 7-167 2-172 (176)
39 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.6E-33 7.8E-38 210.4 23.6 165 6-172 1-180 (222)
40 cd01868 Rab11_like Rab11-like. 100.0 4.5E-33 9.7E-38 201.9 23.2 164 4-167 1-164 (165)
41 cd04118 Rab24 Rab24 subfamily. 100.0 6.2E-33 1.3E-37 206.3 24.2 166 7-173 1-171 (193)
42 KOG0088 GTPase Rab21, small G 100.0 9.1E-35 2E-39 199.5 12.7 170 5-174 12-181 (218)
43 cd04131 Rnd Rnd subfamily. Th 100.0 2.7E-33 5.8E-38 205.4 21.4 161 6-168 1-176 (178)
44 cd04119 RJL RJL (RabJ-Like) su 100.0 5.3E-33 1.1E-37 201.7 22.4 162 7-168 1-167 (168)
45 PF00071 Ras: Ras family; Int 100.0 5.3E-33 1.2E-37 200.9 22.3 161 8-168 1-161 (162)
46 cd01864 Rab19 Rab19 subfamily. 100.0 7.5E-33 1.6E-37 200.9 22.5 163 4-166 1-164 (165)
47 PLN03118 Rab family protein; P 100.0 2.7E-32 5.8E-37 205.5 25.9 167 3-170 11-179 (211)
48 cd01875 RhoG RhoG subfamily. 100.0 8.6E-33 1.9E-37 205.1 22.6 163 5-169 2-178 (191)
49 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.2E-32 2.6E-37 202.7 22.0 162 7-169 1-167 (182)
50 cd04132 Rho4_like Rho4-like su 100.0 1.8E-32 3.9E-37 202.8 22.5 165 7-173 1-172 (187)
51 cd04113 Rab4 Rab4 subfamily. 100.0 2E-32 4.4E-37 197.7 22.1 160 7-166 1-160 (161)
52 smart00175 RAB Rab subfamily o 100.0 3.3E-32 7E-37 197.0 22.9 163 7-169 1-163 (164)
53 cd04136 Rap_like Rap-like subf 100.0 1.9E-32 4.1E-37 198.1 21.0 160 7-167 2-162 (163)
54 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 7.9E-32 1.7E-36 196.4 23.1 162 8-169 2-166 (170)
55 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.8E-32 8.2E-37 199.0 21.0 160 6-167 1-174 (175)
56 cd04175 Rap1 Rap1 subgroup. T 100.0 5.1E-32 1.1E-36 196.3 21.2 160 7-167 2-162 (164)
57 KOG0081 GTPase Rab27, small G 100.0 2.7E-34 5.8E-39 197.3 8.4 172 2-173 5-186 (219)
58 cd04106 Rab23_lke Rab23-like s 100.0 8.7E-32 1.9E-36 194.5 22.0 159 7-166 1-161 (162)
59 cd04116 Rab9 Rab9 subfamily. 100.0 1.4E-31 3E-36 195.1 22.7 163 3-166 2-169 (170)
60 cd00877 Ran Ran (Ras-related n 100.0 1.1E-31 2.4E-36 195.0 21.8 160 7-169 1-160 (166)
61 PLN03071 GTP-binding nuclear p 100.0 7.7E-32 1.7E-36 203.9 21.7 165 4-171 11-175 (219)
62 cd04124 RabL2 RabL2 subfamily. 100.0 2E-31 4.4E-36 192.6 22.3 160 7-170 1-160 (161)
63 smart00173 RAS Ras subfamily o 100.0 1.6E-31 3.5E-36 193.5 21.6 161 7-168 1-162 (164)
64 cd01861 Rab6 Rab6 subfamily. 100.0 2.3E-31 5E-36 192.1 22.2 160 7-166 1-160 (161)
65 cd04176 Rap2 Rap2 subgroup. T 100.0 1.4E-31 3.1E-36 193.6 21.0 160 7-167 2-162 (163)
66 cd04140 ARHI_like ARHI subfami 100.0 1.9E-31 4.1E-36 193.5 21.6 159 7-166 2-163 (165)
67 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3E-31 6.6E-36 193.4 22.3 162 6-167 2-168 (170)
68 cd01860 Rab5_related Rab5-rela 100.0 4.2E-31 9.2E-36 191.1 22.9 162 6-167 1-162 (163)
69 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3.6E-31 7.9E-36 191.6 22.1 161 6-167 2-163 (164)
70 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3.5E-31 7.6E-36 191.0 21.9 159 7-167 2-161 (162)
71 cd01871 Rac1_like Rac1-like su 100.0 3.3E-31 7.2E-36 193.8 21.0 158 7-166 2-173 (174)
72 cd04114 Rab30 Rab30 subfamily. 100.0 1.9E-30 4.1E-35 188.8 23.9 167 1-167 1-168 (169)
73 cd04134 Rho3 Rho3 subfamily. 100.0 4.5E-31 9.7E-36 195.6 20.7 160 7-168 1-174 (189)
74 cd04123 Rab21 Rab21 subfamily. 100.0 1.5E-30 3.2E-35 187.8 22.9 161 7-167 1-161 (162)
75 cd04142 RRP22 RRP22 subfamily. 100.0 5.5E-31 1.2E-35 196.2 20.9 167 7-173 1-179 (198)
76 cd01862 Rab7 Rab7 subfamily. 100.0 1.6E-30 3.4E-35 189.7 22.8 165 7-171 1-170 (172)
77 smart00176 RAN Ran (Ras-relate 100.0 1.1E-30 2.4E-35 194.4 21.4 156 12-170 1-156 (200)
78 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.3E-30 5E-35 187.5 22.2 160 7-167 1-163 (164)
79 cd01863 Rab18 Rab18 subfamily. 100.0 3.1E-30 6.7E-35 186.3 21.9 159 7-166 1-160 (161)
80 cd01892 Miro2 Miro2 subfamily. 100.0 1.1E-30 2.4E-35 190.2 19.3 162 5-168 3-166 (169)
81 cd00154 Rab Rab family. Rab G 100.0 4.4E-30 9.5E-35 184.2 21.5 158 7-164 1-158 (159)
82 smart00174 RHO Rho (Ras homolo 100.0 1.9E-30 4.1E-35 189.7 19.9 158 9-168 1-172 (174)
83 cd04177 RSR1 RSR1 subgroup. R 100.0 5.2E-30 1.1E-34 186.5 21.9 161 7-168 2-164 (168)
84 cd01873 RhoBTB RhoBTB subfamil 100.0 2.2E-30 4.8E-35 192.3 19.8 158 6-166 2-194 (195)
85 cd04146 RERG_RasL11_like RERG/ 100.0 2.9E-30 6.3E-35 187.2 19.5 160 8-168 1-164 (165)
86 cd04143 Rhes_like Rhes_like su 100.0 1.3E-29 2.9E-34 194.3 24.0 160 7-167 1-170 (247)
87 cd04103 Centaurin_gamma Centau 100.0 5E-30 1.1E-34 184.7 20.2 153 7-166 1-157 (158)
88 cd04148 RGK RGK subfamily. Th 100.0 7.9E-30 1.7E-34 193.1 22.0 164 7-172 1-167 (221)
89 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.5E-29 3.2E-34 184.9 20.8 157 7-165 1-171 (173)
90 cd04135 Tc10 TC10 subfamily. 100.0 1.5E-29 3.2E-34 185.0 20.3 159 7-167 1-173 (174)
91 cd04139 RalA_RalB RalA/RalB su 100.0 4.7E-29 1E-33 180.3 21.6 161 7-168 1-162 (164)
92 KOG0083 GTPase Rab26/Rab37, sm 100.0 7.5E-32 1.6E-36 180.3 6.2 161 10-170 1-162 (192)
93 cd00876 Ras Ras family. The R 100.0 6.2E-29 1.3E-33 178.9 20.4 158 8-166 1-159 (160)
94 cd04129 Rho2 Rho2 subfamily. 100.0 1.5E-28 3.2E-33 181.8 21.3 161 7-169 2-174 (187)
95 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.2E-28 2.5E-33 181.8 20.3 167 5-174 2-176 (183)
96 KOG4252 GTP-binding protein [S 100.0 2.9E-31 6.3E-36 185.9 5.7 173 2-175 16-188 (246)
97 cd04137 RheB Rheb (Ras Homolog 100.0 4.3E-28 9.2E-33 178.3 21.7 163 7-170 2-165 (180)
98 cd01870 RhoA_like RhoA-like su 100.0 3.8E-28 8.3E-33 177.7 20.8 159 7-167 2-174 (175)
99 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.5E-29 5.4E-34 182.2 13.6 153 8-165 1-163 (164)
100 cd04147 Ras_dva Ras-dva subfam 100.0 5.2E-28 1.1E-32 180.5 21.0 160 8-168 1-163 (198)
101 PLN00223 ADP-ribosylation fact 100.0 1.7E-28 3.7E-33 180.5 18.0 159 4-169 15-179 (181)
102 cd04149 Arf6 Arf6 subfamily. 100.0 1.9E-28 4.1E-33 178.3 17.4 155 4-165 7-167 (168)
103 PTZ00132 GTP-binding nuclear p 100.0 2E-27 4.3E-32 179.6 23.0 167 1-170 4-170 (215)
104 cd04158 ARD1 ARD1 subfamily. 100.0 2.9E-28 6.3E-33 177.5 17.6 156 8-170 1-163 (169)
105 cd00157 Rho Rho (Ras homology) 100.0 1.3E-27 2.9E-32 174.0 20.6 157 7-165 1-170 (171)
106 smart00177 ARF ARF-like small 100.0 1.3E-28 2.8E-33 180.3 15.3 157 4-167 11-173 (175)
107 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.1E-28 2.4E-33 177.9 14.2 152 7-165 1-158 (159)
108 PTZ00133 ADP-ribosylation fact 100.0 1.3E-27 2.8E-32 176.0 19.3 160 5-171 16-181 (182)
109 KOG0395 Ras-related GTPase [Ge 100.0 1.4E-27 3E-32 176.5 19.2 167 5-172 2-169 (196)
110 cd04102 RabL3 RabL3 (Rab-like3 100.0 2.1E-27 4.7E-32 176.7 19.6 147 7-153 1-175 (202)
111 cd04154 Arl2 Arl2 subfamily. 100.0 1.8E-27 3.9E-32 174.0 18.1 155 4-165 12-172 (173)
112 cd01893 Miro1 Miro1 subfamily. 100.0 5E-27 1.1E-31 170.5 19.2 159 7-168 1-164 (166)
113 cd04157 Arl6 Arl6 subfamily. 100.0 6.8E-27 1.5E-31 168.8 16.3 152 8-165 1-161 (162)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.1E-26 2.5E-31 169.9 17.6 154 5-165 14-173 (174)
115 cd04161 Arl2l1_Arl13_like Arl2 100.0 3.3E-27 7.1E-32 171.6 14.0 151 8-165 1-166 (167)
116 cd00879 Sar1 Sar1 subfamily. 99.9 3E-26 6.5E-31 169.9 18.5 157 3-166 16-189 (190)
117 KOG0393 Ras-related small GTPa 99.9 1.8E-27 4E-32 172.5 11.5 166 4-171 2-182 (198)
118 PTZ00099 rab6; Provisional 99.9 9.4E-26 2E-30 164.9 20.1 141 29-169 3-143 (176)
119 PLN00023 GTP-binding protein; 99.9 1E-25 2.2E-30 175.7 21.2 140 4-143 19-189 (334)
120 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.6E-26 3.4E-31 166.7 15.5 152 8-165 1-159 (160)
121 PF00025 Arf: ADP-ribosylation 99.9 3.3E-26 7.1E-31 167.4 17.0 159 2-167 10-175 (175)
122 cd04160 Arfrp1 Arfrp1 subfamil 99.9 3.3E-26 7E-31 166.1 16.7 152 8-165 1-166 (167)
123 cd00878 Arf_Arl Arf (ADP-ribos 99.9 3.2E-26 6.8E-31 164.8 15.6 151 8-165 1-157 (158)
124 cd04151 Arl1 Arl1 subfamily. 99.9 5.9E-26 1.3E-30 163.5 17.0 151 8-165 1-157 (158)
125 smart00178 SAR Sar1p-like memb 99.9 1.6E-25 3.6E-30 165.1 17.8 157 3-166 14-183 (184)
126 KOG0073 GTP-binding ADP-ribosy 99.9 2.6E-25 5.7E-30 153.8 16.5 160 4-170 14-180 (185)
127 cd04159 Arl10_like Arl10-like 99.9 4.1E-25 8.9E-30 158.4 15.9 152 8-165 1-158 (159)
128 cd01890 LepA LepA subfamily. 99.9 7.4E-25 1.6E-29 160.8 17.2 154 8-167 2-176 (179)
129 cd01897 NOG NOG1 is a nucleola 99.9 1.1E-24 2.5E-29 158.2 16.7 156 7-167 1-167 (168)
130 cd01898 Obg Obg subfamily. Th 99.9 1.3E-24 2.9E-29 158.1 15.8 157 8-166 2-169 (170)
131 cd01878 HflX HflX subfamily. 99.9 1.2E-24 2.6E-29 163.1 15.9 156 4-166 39-203 (204)
132 TIGR00231 small_GTP small GTP- 99.9 1E-23 2.2E-28 150.8 19.3 158 6-164 1-160 (161)
133 PRK12299 obgE GTPase CgtA; Rev 99.9 5E-24 1.1E-28 169.6 19.2 163 6-169 158-329 (335)
134 cd04171 SelB SelB subfamily. 99.9 5.1E-24 1.1E-28 153.9 16.8 152 7-165 1-163 (164)
135 cd04155 Arl3 Arl3 subfamily. 99.9 2.2E-23 4.8E-28 152.1 19.0 155 4-165 12-172 (173)
136 COG1100 GTPase SAR1 and relate 99.9 4.8E-23 1E-27 155.9 21.0 170 6-175 5-192 (219)
137 KOG0070 GTP-binding ADP-ribosy 99.9 4.6E-24 9.9E-29 151.3 13.7 159 4-169 15-179 (181)
138 TIGR02528 EutP ethanolamine ut 99.9 7.7E-24 1.7E-28 149.8 13.4 134 8-164 2-141 (142)
139 cd00882 Ras_like_GTPase Ras-li 99.9 8.4E-23 1.8E-27 144.7 18.2 153 11-164 1-156 (157)
140 cd01879 FeoB Ferrous iron tran 99.9 3.6E-23 7.9E-28 148.6 16.4 147 11-166 1-155 (158)
141 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 4.7E-23 1E-27 149.6 16.5 156 8-167 2-165 (168)
142 PF02421 FeoB_N: Ferrous iron 99.9 1.3E-23 2.8E-28 148.9 12.2 148 7-163 1-156 (156)
143 cd01891 TypA_BipA TypA (tyrosi 99.9 2.6E-23 5.7E-28 154.6 14.0 149 7-159 3-173 (194)
144 TIGR02729 Obg_CgtA Obg family 99.9 1.4E-22 3E-27 161.2 18.2 160 6-167 157-328 (329)
145 TIGR03156 GTP_HflX GTP-binding 99.9 1.2E-22 2.7E-27 162.8 17.7 154 5-166 188-350 (351)
146 KOG3883 Ras family small GTPas 99.9 2.1E-22 4.6E-27 137.9 15.7 173 5-177 8-184 (198)
147 PRK04213 GTP-binding protein; 99.9 2.2E-23 4.8E-28 155.8 11.8 151 5-168 8-192 (201)
148 TIGR00436 era GTP-binding prot 99.9 1.6E-22 3.5E-27 157.6 16.3 153 8-167 2-163 (270)
149 PF08477 Miro: Miro-like prote 99.9 1.7E-22 3.7E-27 138.6 13.6 114 8-122 1-119 (119)
150 cd01881 Obg_like The Obg-like 99.9 1.9E-22 4.1E-27 147.4 13.8 155 11-166 1-175 (176)
151 PRK15494 era GTPase Era; Provi 99.9 5.5E-22 1.2E-26 158.8 16.4 155 4-168 50-216 (339)
152 cd00881 GTP_translation_factor 99.9 1E-21 2.2E-26 145.1 15.9 156 8-167 1-186 (189)
153 cd04164 trmE TrmE (MnmE, ThdF, 99.9 8.5E-22 1.8E-26 141.1 15.0 146 7-167 2-156 (157)
154 KOG0075 GTP-binding ADP-ribosy 99.9 1.8E-22 3.8E-27 137.4 10.6 158 5-168 19-182 (186)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 2E-21 4.4E-26 160.0 19.0 154 5-172 202-364 (442)
156 PRK03003 GTP-binding protein D 99.9 8.1E-22 1.8E-26 164.6 16.5 154 5-169 37-200 (472)
157 PRK15467 ethanolamine utilizat 99.9 1.1E-21 2.4E-26 141.1 14.4 143 8-172 3-151 (158)
158 KOG0071 GTP-binding ADP-ribosy 99.9 2.1E-21 4.5E-26 131.2 14.4 156 5-167 16-177 (180)
159 TIGR01393 lepA GTP-binding pro 99.9 1.9E-21 4.1E-26 165.4 17.9 156 6-167 3-179 (595)
160 cd01889 SelB_euk SelB subfamil 99.9 9.4E-22 2E-26 146.0 14.0 158 7-168 1-186 (192)
161 PRK11058 GTPase HflX; Provisio 99.9 1.9E-21 4.2E-26 159.3 17.1 158 7-170 198-364 (426)
162 cd01894 EngA1 EngA1 subfamily. 99.9 9.8E-22 2.1E-26 140.8 13.0 146 10-166 1-156 (157)
163 PRK12297 obgE GTPase CgtA; Rev 99.9 9.7E-21 2.1E-25 154.5 20.2 159 7-170 159-329 (424)
164 TIGR00487 IF-2 translation ini 99.9 8E-21 1.7E-25 160.9 20.2 153 5-165 86-247 (587)
165 PRK05291 trmE tRNA modificatio 99.9 2.6E-21 5.7E-26 160.1 16.4 149 5-169 214-371 (449)
166 PRK03003 GTP-binding protein D 99.9 3.5E-21 7.7E-26 160.7 17.0 158 5-168 210-382 (472)
167 PRK00454 engB GTP-binding prot 99.9 8E-21 1.7E-25 141.3 17.0 158 3-167 21-193 (196)
168 TIGR03598 GTPase_YsxC ribosome 99.9 5E-21 1.1E-25 140.6 14.7 149 2-157 14-179 (179)
169 cd01888 eIF2_gamma eIF2-gamma 99.9 3.9E-21 8.4E-26 143.9 14.0 159 7-167 1-198 (203)
170 PRK12296 obgE GTPase CgtA; Rev 99.9 1E-20 2.2E-25 156.3 17.7 164 5-171 158-343 (500)
171 KOG1673 Ras GTPases [General f 99.9 1E-21 2.2E-26 134.9 9.7 163 6-169 20-187 (205)
172 TIGR03594 GTPase_EngA ribosome 99.9 1.4E-20 2.9E-25 156.0 17.8 158 5-169 171-345 (429)
173 cd04163 Era Era subfamily. Er 99.9 1.8E-20 3.9E-25 135.2 15.8 156 6-166 3-167 (168)
174 cd01895 EngA2 EngA2 subfamily. 99.9 2.3E-20 5E-25 135.7 16.0 155 6-166 2-173 (174)
175 PRK12298 obgE GTPase CgtA; Rev 99.9 5.3E-20 1.1E-24 149.3 18.7 163 6-170 159-335 (390)
176 PRK00089 era GTPase Era; Revie 99.9 2.1E-20 4.5E-25 147.5 15.7 159 5-168 4-171 (292)
177 TIGR00475 selB selenocysteine- 99.9 3.1E-20 6.6E-25 157.9 17.7 155 7-170 1-168 (581)
178 PRK00093 GTP-binding protein D 99.9 4E-20 8.8E-25 153.4 18.1 146 7-165 2-159 (435)
179 COG1159 Era GTPase [General fu 99.9 3.1E-20 6.7E-25 141.6 15.4 160 4-168 4-172 (298)
180 CHL00189 infB translation init 99.9 4.9E-20 1.1E-24 158.5 17.7 156 5-167 243-409 (742)
181 PRK05433 GTP-binding protein L 99.9 5.7E-20 1.2E-24 156.6 18.0 162 1-168 2-184 (600)
182 TIGR03594 GTPase_EngA ribosome 99.9 2.8E-20 6.1E-25 154.2 15.5 151 8-169 1-161 (429)
183 PRK05306 infB translation init 99.9 7.1E-20 1.5E-24 158.8 18.5 153 5-166 289-450 (787)
184 KOG0076 GTP-binding ADP-ribosy 99.8 6.6E-21 1.4E-25 133.3 9.1 161 4-170 15-189 (197)
185 PRK09518 bifunctional cytidyla 99.8 7.4E-20 1.6E-24 159.4 17.4 154 5-169 274-437 (712)
186 TIGR00437 feoB ferrous iron tr 99.8 8.4E-20 1.8E-24 155.4 16.8 146 13-167 1-154 (591)
187 PF00009 GTP_EFTU: Elongation 99.8 1.5E-20 3.2E-25 139.2 9.7 159 5-167 2-186 (188)
188 KOG4423 GTP-binding protein-li 99.8 7.4E-23 1.6E-27 144.6 -2.5 172 2-173 21-199 (229)
189 cd00880 Era_like Era (E. coli 99.8 1.2E-19 2.6E-24 129.7 14.0 151 11-166 1-162 (163)
190 PRK00093 GTP-binding protein D 99.8 2E-19 4.3E-24 149.3 16.3 156 5-168 172-344 (435)
191 PRK09554 feoB ferrous iron tra 99.8 5E-19 1.1E-23 154.1 18.8 153 6-167 3-167 (772)
192 TIGR00491 aIF-2 translation in 99.8 7.3E-19 1.6E-23 148.9 18.8 160 5-171 3-219 (590)
193 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 4.1E-20 8.8E-25 131.2 9.1 165 5-172 9-173 (216)
194 cd04105 SR_beta Signal recogni 99.8 5.2E-19 1.1E-23 132.3 15.2 117 8-125 2-123 (203)
195 PRK12317 elongation factor 1-a 99.8 2.2E-19 4.8E-24 148.4 13.5 159 1-161 1-198 (425)
196 COG2229 Predicted GTPase [Gene 99.8 3.2E-18 7E-23 121.4 17.2 157 4-166 8-176 (187)
197 COG1160 Predicted GTPases [Gen 99.8 4.7E-19 1E-23 142.2 14.0 152 7-168 4-165 (444)
198 cd01896 DRG The developmentall 99.8 3.5E-18 7.7E-23 130.2 18.3 151 8-167 2-225 (233)
199 PRK09518 bifunctional cytidyla 99.8 1.8E-18 3.9E-23 150.8 18.9 157 5-169 449-622 (712)
200 cd01876 YihA_EngB The YihA (En 99.8 1E-18 2.2E-23 126.3 14.5 150 8-166 1-169 (170)
201 KOG0074 GTP-binding ADP-ribosy 99.8 3.2E-19 6.9E-24 120.9 10.4 156 4-165 15-176 (185)
202 cd04168 TetM_like Tet(M)-like 99.8 2.9E-18 6.3E-23 130.9 16.2 113 8-124 1-129 (237)
203 TIGR01394 TypA_BipA GTP-bindin 99.8 1.1E-18 2.4E-23 148.3 14.9 156 8-167 3-190 (594)
204 PRK10218 GTP-binding protein; 99.8 4.1E-18 9E-23 144.8 17.9 159 5-167 4-194 (607)
205 TIGR00483 EF-1_alpha translati 99.8 1.1E-18 2.5E-23 144.2 14.2 155 4-160 5-199 (426)
206 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.3E-18 2.8E-23 130.7 13.1 149 8-159 1-185 (208)
207 KOG0072 GTP-binding ADP-ribosy 99.8 1.8E-19 4E-24 122.3 6.2 162 4-170 16-181 (182)
208 COG1160 Predicted GTPases [Gen 99.8 6.4E-18 1.4E-22 135.7 15.6 159 5-169 177-352 (444)
209 PRK04004 translation initiatio 99.8 2E-17 4.2E-22 140.7 19.5 160 5-171 5-221 (586)
210 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.1E-17 2.4E-22 124.1 15.8 148 6-157 2-172 (195)
211 TIGR03680 eif2g_arch translati 99.8 2.9E-18 6.2E-23 140.7 14.0 162 4-167 2-195 (406)
212 COG0486 ThdF Predicted GTPase 99.8 4.6E-18 1E-22 136.9 14.5 154 5-170 216-378 (454)
213 COG0218 Predicted GTPase [Gene 99.8 1.6E-17 3.6E-22 120.3 15.6 158 3-168 21-197 (200)
214 PF10662 PduV-EutP: Ethanolami 99.8 8.4E-18 1.8E-22 116.7 13.1 135 8-164 3-142 (143)
215 PRK04000 translation initiatio 99.8 5.3E-18 1.1E-22 139.1 14.2 163 3-167 6-200 (411)
216 PRK10512 selenocysteinyl-tRNA- 99.8 1.8E-17 4E-22 141.6 17.6 156 7-167 1-165 (614)
217 COG2262 HflX GTPases [General 99.8 2.4E-17 5.3E-22 130.6 16.8 168 5-179 191-367 (411)
218 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 5.5E-18 1.2E-22 127.8 11.5 162 8-172 1-180 (232)
219 cd04167 Snu114p Snu114p subfam 99.8 1.2E-17 2.6E-22 126.0 12.8 113 8-124 2-136 (213)
220 cd01883 EF1_alpha Eukaryotic e 99.8 3.9E-18 8.5E-23 129.1 10.2 148 8-157 1-194 (219)
221 PRK12736 elongation factor Tu; 99.7 5.7E-17 1.2E-21 132.6 15.4 147 4-154 10-179 (394)
222 COG0370 FeoB Fe2+ transport sy 99.7 7.5E-17 1.6E-21 135.1 16.0 155 6-169 3-165 (653)
223 KOG1489 Predicted GTP-binding 99.7 6.2E-17 1.3E-21 124.0 13.9 156 6-165 196-364 (366)
224 KOG1423 Ras-like GTPase ERA [C 99.7 1.3E-16 2.8E-21 121.7 14.7 160 4-167 70-270 (379)
225 cd04169 RF3 RF3 subfamily. Pe 99.7 1.7E-16 3.8E-21 123.1 15.8 115 7-125 3-137 (267)
226 cd04165 GTPBP1_like GTPBP1-lik 99.7 2.2E-16 4.7E-21 119.6 15.0 153 8-164 1-219 (224)
227 PRK12735 elongation factor Tu; 99.7 1.8E-16 4E-21 129.7 15.6 148 4-155 10-180 (396)
228 COG1084 Predicted GTPase [Gene 99.7 2.6E-16 5.6E-21 121.4 15.4 158 5-168 167-336 (346)
229 cd04104 p47_IIGP_like p47 (47- 99.7 3.4E-16 7.5E-21 116.6 15.6 159 6-172 1-188 (197)
230 TIGR00485 EF-Tu translation el 99.7 1.5E-16 3.2E-21 130.3 14.9 147 4-154 10-179 (394)
231 CHL00071 tufA elongation facto 99.7 5.5E-16 1.2E-20 127.4 16.1 149 4-156 10-181 (409)
232 cd01885 EF2 EF2 (for archaea a 99.7 3.1E-16 6.8E-21 118.3 12.8 113 8-124 2-138 (222)
233 cd01886 EF-G Elongation factor 99.7 2.1E-16 4.7E-21 122.7 12.0 114 8-125 1-130 (270)
234 COG0532 InfB Translation initi 99.7 2.5E-15 5.5E-20 122.8 18.1 178 5-191 4-191 (509)
235 cd01850 CDC_Septin CDC/Septin. 99.7 3.5E-16 7.6E-21 122.0 12.6 143 5-151 3-185 (276)
236 KOG1707 Predicted Ras related/ 99.7 1.4E-16 3E-21 130.6 10.3 162 5-168 8-175 (625)
237 cd04170 EF-G_bact Elongation f 99.7 5.4E-16 1.2E-20 120.9 13.3 115 8-126 1-131 (268)
238 PRK00741 prfC peptide chain re 99.7 1.3E-15 2.9E-20 128.0 16.3 117 4-124 8-144 (526)
239 TIGR02034 CysN sulfate adenyly 99.7 8.4E-16 1.8E-20 126.2 13.5 149 7-158 1-187 (406)
240 PRK05124 cysN sulfate adenylyl 99.7 9.7E-16 2.1E-20 127.8 13.9 153 4-159 25-216 (474)
241 KOG0462 Elongation factor-type 99.7 1.2E-15 2.6E-20 124.4 13.4 161 3-167 57-234 (650)
242 PLN03126 Elongation factor Tu; 99.7 1.8E-15 4E-20 125.8 14.4 149 4-156 79-250 (478)
243 PLN00043 elongation factor 1-a 99.7 3E-15 6.5E-20 123.9 15.5 151 4-158 5-203 (447)
244 PRK00049 elongation factor Tu; 99.7 4.9E-15 1.1E-19 121.3 16.2 148 4-155 10-180 (396)
245 PRK13351 elongation factor G; 99.7 1.5E-15 3.4E-20 132.4 14.1 118 4-125 6-139 (687)
246 COG0536 Obg Predicted GTPase [ 99.7 3.7E-15 8.1E-20 115.6 14.1 164 7-171 160-336 (369)
247 COG1163 DRG Predicted GTPase [ 99.7 9.1E-15 2E-19 112.6 16.1 154 5-167 62-288 (365)
248 COG3596 Predicted GTPase [Gene 99.7 1.7E-15 3.8E-20 114.3 11.9 161 4-169 37-223 (296)
249 PF01926 MMR_HSR1: 50S ribosom 99.7 6.3E-15 1.4E-19 100.5 13.8 106 8-120 1-116 (116)
250 PTZ00141 elongation factor 1- 99.7 3.9E-15 8.5E-20 123.3 14.8 152 4-158 5-203 (446)
251 TIGR00503 prfC peptide chain r 99.7 4.5E-15 9.8E-20 124.9 15.3 117 4-124 9-145 (527)
252 KOG0077 Vesicle coat complex C 99.7 9E-16 2E-20 106.9 8.9 157 4-167 18-192 (193)
253 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 8.6E-15 1.9E-19 109.0 14.6 159 7-169 1-185 (196)
254 cd01899 Ygr210 Ygr210 subfamil 99.6 7.4E-15 1.6E-19 116.3 14.8 81 9-89 1-110 (318)
255 PLN03127 Elongation factor Tu; 99.6 8.9E-15 1.9E-19 121.0 15.8 143 5-151 60-225 (447)
256 PRK05506 bifunctional sulfate 99.6 6.3E-15 1.4E-19 127.3 14.8 152 4-158 22-211 (632)
257 PF09439 SRPRB: Signal recogni 99.6 1.6E-15 3.4E-20 109.9 9.3 116 6-125 3-126 (181)
258 PTZ00327 eukaryotic translatio 99.6 7.7E-15 1.7E-19 121.3 13.1 162 4-167 32-232 (460)
259 KOG1145 Mitochondrial translat 99.6 3.9E-14 8.4E-19 115.7 16.7 177 5-191 152-337 (683)
260 PRK12739 elongation factor G; 99.6 2.6E-14 5.6E-19 124.6 15.7 116 4-125 6-139 (691)
261 TIGR00484 EF-G translation elo 99.6 3.4E-14 7.4E-19 123.9 14.9 117 5-125 9-141 (689)
262 KOG1191 Mitochondrial GTPase [ 99.6 1.4E-14 3E-19 117.1 10.6 164 5-172 267-454 (531)
263 PRK09866 hypothetical protein; 99.6 3.4E-13 7.3E-18 113.3 18.4 109 55-165 230-350 (741)
264 COG0481 LepA Membrane GTPase L 99.6 1.1E-13 2.3E-18 111.6 14.6 160 3-168 6-186 (603)
265 COG4917 EutP Ethanolamine util 99.6 2.2E-14 4.8E-19 95.5 8.5 136 8-165 3-143 (148)
266 COG5256 TEF1 Translation elong 99.6 4.2E-14 9.1E-19 112.4 11.3 156 2-159 3-202 (428)
267 PRK09602 translation-associate 99.6 3.3E-13 7.1E-18 110.0 16.5 83 7-89 2-113 (396)
268 KOG1490 GTP-binding protein CR 99.5 4.3E-14 9.3E-19 114.4 10.7 166 4-172 166-345 (620)
269 cd00066 G-alpha G protein alph 99.5 5.3E-13 1.1E-17 106.2 14.5 119 53-171 159-314 (317)
270 KOG3905 Dynein light intermedi 99.5 9.2E-13 2E-17 101.7 15.1 160 6-168 52-290 (473)
271 PRK00007 elongation factor G; 99.5 3.7E-13 8E-18 117.4 14.4 116 4-125 8-141 (693)
272 PRK12740 elongation factor G; 99.5 5E-13 1.1E-17 116.5 14.5 109 12-124 1-125 (668)
273 TIGR00490 aEF-2 translation el 99.5 3.2E-13 6.9E-18 118.2 12.7 117 4-124 17-151 (720)
274 cd01853 Toc34_like Toc34-like 99.5 1.1E-12 2.4E-17 100.7 13.4 120 4-126 29-164 (249)
275 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.3E-12 5E-17 100.6 14.4 126 5-132 37-174 (313)
276 KOG0090 Signal recognition par 99.5 4.1E-13 8.8E-18 97.7 9.0 115 6-125 38-159 (238)
277 PF04548 AIG1: AIG1 family; I 99.5 1.1E-12 2.5E-17 98.7 11.5 160 7-170 1-188 (212)
278 PRK14845 translation initiatio 99.5 5.9E-12 1.3E-16 112.4 17.7 145 17-168 472-673 (1049)
279 KOG1532 GTPase XAB1, interacts 99.5 3.3E-13 7.2E-18 101.9 8.1 168 4-171 17-267 (366)
280 smart00275 G_alpha G protein a 99.4 3.9E-12 8.5E-17 102.1 14.3 118 54-171 183-337 (342)
281 PTZ00258 GTP-binding protein; 99.4 4.7E-12 1E-16 102.4 14.3 86 4-89 19-126 (390)
282 TIGR00101 ureG urease accessor 99.4 1.1E-11 2.5E-16 92.2 13.8 102 55-167 92-195 (199)
283 TIGR00157 ribosome small subun 99.4 9.2E-13 2E-17 101.2 8.2 96 66-165 24-120 (245)
284 PF05783 DLIC: Dynein light in 99.4 1.1E-11 2.3E-16 102.7 14.4 161 7-170 26-266 (472)
285 COG1217 TypA Predicted membran 99.4 5.7E-12 1.2E-16 101.5 12.1 158 6-167 5-194 (603)
286 PRK07560 elongation factor EF- 99.4 1.3E-11 2.8E-16 108.4 15.0 117 4-124 18-152 (731)
287 PLN00116 translation elongatio 99.4 3.4E-12 7.4E-17 113.4 10.6 118 3-124 16-163 (843)
288 COG2895 CysN GTPases - Sulfate 99.4 1E-11 2.2E-16 97.0 11.8 153 3-158 3-193 (431)
289 PRK13768 GTPase; Provisional 99.4 9.8E-12 2.1E-16 96.0 11.2 110 56-167 98-246 (253)
290 PTZ00416 elongation factor 2; 99.4 5.5E-12 1.2E-16 111.9 11.2 117 4-124 17-157 (836)
291 COG5257 GCD11 Translation init 99.4 2.5E-12 5.5E-17 99.1 7.5 163 5-169 9-203 (415)
292 KOG1707 Predicted Ras related/ 99.4 2.5E-11 5.5E-16 100.1 13.8 159 5-168 424-583 (625)
293 PRK09601 GTP-binding protein Y 99.3 4.7E-11 1E-15 95.6 14.5 83 7-89 3-107 (364)
294 KOG3887 Predicted small GTPase 99.3 8.5E-12 1.8E-16 92.7 9.4 163 7-172 28-206 (347)
295 cd01882 BMS1 Bms1. Bms1 is an 99.3 8E-11 1.7E-15 89.4 15.0 140 5-156 38-184 (225)
296 PF05049 IIGP: Interferon-indu 99.3 1.5E-11 3.3E-16 98.5 11.3 158 5-170 34-220 (376)
297 TIGR00073 hypB hydrogenase acc 99.3 1.9E-11 4.1E-16 91.8 10.8 152 5-167 21-206 (207)
298 PRK09435 membrane ATPase/prote 99.3 2.2E-11 4.7E-16 96.8 11.6 114 54-178 148-270 (332)
299 PF03029 ATP_bind_1: Conserved 99.3 2.4E-12 5.3E-17 98.2 6.0 112 56-167 92-236 (238)
300 PF00350 Dynamin_N: Dynamin fa 99.3 3.6E-11 7.8E-16 87.2 11.4 62 57-121 103-168 (168)
301 smart00010 small_GTPase Small 99.3 4.1E-11 8.9E-16 82.2 10.9 114 7-157 1-115 (124)
302 TIGR02836 spore_IV_A stage IV 99.3 1.4E-10 3E-15 93.3 15.1 161 5-172 16-237 (492)
303 KOG0082 G-protein alpha subuni 99.3 1.2E-10 2.7E-15 92.2 14.5 126 48-173 188-349 (354)
304 KOG3886 GTP-binding protein [S 99.3 1.1E-11 2.4E-16 91.4 7.1 144 6-152 4-163 (295)
305 KOG0461 Selenocysteine-specifi 99.3 1.8E-10 3.8E-15 90.0 13.9 162 3-168 4-193 (522)
306 KOG1144 Translation initiation 99.3 4E-11 8.8E-16 101.3 10.3 168 6-177 475-696 (1064)
307 PF00735 Septin: Septin; Inte 99.3 2.5E-10 5.4E-15 89.2 13.8 139 6-149 4-182 (281)
308 COG0480 FusA Translation elong 99.3 5.8E-11 1.3E-15 102.4 11.1 118 3-124 7-141 (697)
309 KOG0458 Elongation factor 1 al 99.2 6.8E-11 1.5E-15 97.7 10.7 153 5-159 176-373 (603)
310 COG0378 HypB Ni2+-binding GTPa 99.2 5.8E-11 1.2E-15 85.9 8.5 149 7-167 14-200 (202)
311 COG4108 PrfC Peptide chain rel 99.2 2.1E-10 4.5E-15 92.0 11.8 133 5-143 11-163 (528)
312 smart00053 DYNc Dynamin, GTPas 99.2 3.1E-10 6.8E-15 86.4 12.2 118 5-125 25-206 (240)
313 TIGR00750 lao LAO/AO transport 99.2 2.1E-10 4.5E-15 90.9 11.0 104 54-168 126-238 (300)
314 TIGR00993 3a0901s04IAP86 chlor 99.2 1.1E-09 2.3E-14 92.9 15.4 120 4-125 116-250 (763)
315 KOG0410 Predicted GTP binding 99.2 5.7E-11 1.2E-15 91.9 6.4 158 4-172 176-345 (410)
316 COG0050 TufB GTPases - transla 99.2 3.1E-10 6.7E-15 86.8 9.7 167 5-175 11-204 (394)
317 COG5019 CDC3 Septin family pro 99.1 1.2E-09 2.6E-14 86.2 12.4 162 5-172 22-223 (373)
318 KOG0468 U5 snRNP-specific prot 99.1 6.3E-10 1.4E-14 93.3 10.9 117 3-123 125-261 (971)
319 COG0012 Predicted GTPase, prob 99.1 5.3E-09 1.1E-13 83.0 15.3 84 6-89 2-108 (372)
320 COG3276 SelB Selenocysteine-sp 99.1 1.4E-09 3E-14 87.6 12.2 157 8-168 2-162 (447)
321 KOG1547 Septin CDC10 and relat 99.1 8.8E-10 1.9E-14 82.1 9.0 148 1-153 41-228 (336)
322 cd01900 YchF YchF subfamily. 99.1 6.2E-10 1.3E-14 86.4 7.9 81 9-89 1-103 (274)
323 KOG1486 GTP-binding protein DR 99.1 1.2E-08 2.6E-13 76.6 14.1 86 6-93 62-154 (364)
324 KOG2655 Septin family protein 99.0 3E-09 6.5E-14 84.4 11.1 161 5-172 20-218 (366)
325 cd01855 YqeH YqeH. YqeH is an 99.0 4.2E-09 9.2E-14 78.0 10.3 93 68-167 24-124 (190)
326 PF00503 G-alpha: G-protein al 99.0 3.2E-09 6.9E-14 87.1 10.5 115 53-167 234-389 (389)
327 KOG0705 GTPase-activating prot 99.0 3E-09 6.5E-14 87.5 9.1 162 5-173 29-194 (749)
328 PRK12289 GTPase RsgA; Reviewed 99.0 2.3E-09 4.9E-14 86.2 8.4 91 70-165 81-172 (352)
329 PRK10463 hydrogenase nickel in 99.0 2.1E-09 4.6E-14 83.6 7.7 56 111-166 230-287 (290)
330 COG1703 ArgK Putative periplas 98.9 1.8E-08 3.9E-13 77.7 11.5 111 54-176 143-262 (323)
331 PF03308 ArgK: ArgK protein; 98.9 4.2E-10 9.1E-15 85.3 2.6 110 55-176 122-238 (266)
332 cd01859 MJ1464 MJ1464. This f 98.9 5.3E-09 1.1E-13 74.9 7.6 95 68-168 2-96 (156)
333 PRK12288 GTPase RsgA; Reviewed 98.9 7.4E-09 1.6E-13 83.2 8.8 88 75-165 117-205 (347)
334 cd01854 YjeQ_engC YjeQ/EngC. 98.9 1.4E-08 2.9E-13 80.0 8.4 88 72-164 72-160 (287)
335 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 7.8E-09 1.7E-13 72.8 6.4 54 8-65 85-138 (141)
336 KOG0448 Mitofusin 1 GTPase, in 98.8 1.5E-07 3.2E-12 79.6 13.8 143 5-151 108-309 (749)
337 cd04178 Nucleostemin_like Nucl 98.8 1.9E-08 4.2E-13 73.1 6.9 56 5-64 116-171 (172)
338 PRK00098 GTPase RsgA; Reviewed 98.8 2.3E-08 4.9E-13 79.2 7.7 87 73-163 75-162 (298)
339 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.7E-08 5.8E-13 71.4 7.3 56 5-64 101-156 (157)
340 KOG2486 Predicted GTPase [Gene 98.8 3.3E-08 7.1E-13 75.3 7.9 154 4-166 134-314 (320)
341 KOG1954 Endocytosis/signaling 98.7 6.6E-08 1.4E-12 76.5 9.0 121 3-126 55-226 (532)
342 cd01849 YlqF_related_GTPase Yl 98.7 6.7E-08 1.4E-12 69.2 8.1 85 80-169 1-86 (155)
343 KOG0460 Mitochondrial translat 98.7 1.3E-07 2.8E-12 74.1 9.4 170 5-178 53-251 (449)
344 TIGR03597 GTPase_YqeH ribosome 98.7 1E-07 2.2E-12 77.4 9.3 95 65-166 50-151 (360)
345 TIGR00092 GTP-binding protein 98.7 1.1E-07 2.4E-12 76.4 8.9 83 7-89 3-108 (368)
346 cd01858 NGP_1 NGP-1. Autoanti 98.7 1.2E-07 2.6E-12 68.0 8.1 91 74-167 4-94 (157)
347 cd01856 YlqF YlqF. Proteins o 98.7 7.6E-08 1.6E-12 70.1 7.0 57 5-65 114-170 (171)
348 KOG0447 Dynamin-like GTP bindi 98.7 1.1E-06 2.3E-11 73.0 14.2 134 4-140 306-508 (980)
349 cd01856 YlqF YlqF. Proteins o 98.7 1.2E-07 2.6E-12 69.0 7.8 99 62-168 2-101 (171)
350 TIGR03596 GTPase_YlqF ribosome 98.6 1.3E-07 2.8E-12 74.1 7.6 57 5-65 117-173 (276)
351 cd01859 MJ1464 MJ1464. This f 98.6 1.4E-07 3E-12 67.6 7.2 56 5-64 100-155 (156)
352 COG5258 GTPBP1 GTPase [General 98.6 4.5E-07 9.9E-12 72.2 10.4 152 4-159 115-330 (527)
353 cd01855 YqeH YqeH. YqeH is an 98.6 8.6E-08 1.9E-12 71.0 6.1 56 6-64 127-189 (190)
354 KOG0466 Translation initiation 98.6 1.4E-08 3E-13 78.4 1.8 166 1-168 33-241 (466)
355 KOG0464 Elongation factor G [T 98.6 4.9E-08 1.1E-12 78.3 4.9 116 6-125 37-168 (753)
356 PRK09563 rbgA GTPase YlqF; Rev 98.6 1.8E-07 3.9E-12 73.7 8.1 58 5-66 120-177 (287)
357 KOG1491 Predicted GTP-binding 98.6 2.7E-07 5.9E-12 72.3 8.2 85 5-89 19-125 (391)
358 KOG0085 G protein subunit Galp 98.6 8.6E-08 1.9E-12 71.3 5.0 124 49-172 193-353 (359)
359 KOG0465 Mitochondrial elongati 98.6 3E-07 6.6E-12 76.9 8.5 114 6-123 39-168 (721)
360 KOG0099 G protein subunit Galp 98.5 2.8E-07 6E-12 69.8 7.0 118 53-170 200-371 (379)
361 TIGR03596 GTPase_YlqF ribosome 98.5 6.9E-07 1.5E-11 70.0 9.6 101 62-170 4-105 (276)
362 COG1161 Predicted GTPases [Gen 98.5 1.9E-07 4.2E-12 74.5 6.5 57 6-66 132-188 (322)
363 cd01851 GBP Guanylate-binding 98.5 3.3E-06 7.2E-11 64.1 12.6 86 5-91 6-104 (224)
364 KOG0467 Translation elongation 98.5 4.6E-07 9.9E-12 77.5 8.5 119 1-123 4-136 (887)
365 TIGR03348 VI_IcmF type VI secr 98.5 1.6E-06 3.5E-11 80.2 12.6 112 9-125 114-257 (1169)
366 cd03112 CobW_like The function 98.5 1.1E-06 2.4E-11 63.1 8.5 64 54-123 86-158 (158)
367 KOG1487 GTP-binding protein DR 98.5 2.1E-06 4.5E-11 65.1 9.8 85 7-93 60-151 (358)
368 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 6.3E-07 1.4E-11 63.1 6.8 78 72-155 5-84 (141)
369 PF09547 Spore_IV_A: Stage IV 98.4 1.1E-05 2.5E-10 65.4 14.2 161 5-172 16-237 (492)
370 cd01849 YlqF_related_GTPase Yl 98.4 6.3E-07 1.4E-11 64.1 6.5 56 5-64 99-154 (155)
371 PRK10416 signal recognition pa 98.4 3.1E-06 6.6E-11 67.5 10.8 96 54-161 196-303 (318)
372 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.3E-06 2.9E-11 68.8 8.7 101 62-170 7-108 (287)
373 COG5192 BMS1 GTP-binding prote 98.4 3.3E-06 7.2E-11 70.5 11.0 136 4-152 67-210 (1077)
374 PF03193 DUF258: Protein of un 98.4 3.5E-07 7.5E-12 65.3 4.2 59 7-68 36-100 (161)
375 PRK12288 GTPase RsgA; Reviewed 98.4 8.5E-07 1.8E-11 71.5 6.0 58 9-69 208-271 (347)
376 PRK14974 cell division protein 98.4 3.9E-06 8.4E-11 67.2 9.7 96 55-162 223-324 (336)
377 COG1618 Predicted nucleotide k 98.3 8.6E-05 1.9E-09 52.6 14.8 114 4-123 3-142 (179)
378 KOG1143 Predicted translation 98.3 3.3E-06 7.1E-11 67.2 8.5 150 5-158 166-378 (591)
379 TIGR00064 ftsY signal recognit 98.3 1.2E-05 2.6E-10 62.8 11.4 96 54-161 154-261 (272)
380 PRK12289 GTPase RsgA; Reviewed 98.3 1.1E-06 2.5E-11 70.8 5.7 57 8-67 174-236 (352)
381 KOG0463 GTP-binding protein GP 98.3 1.6E-06 3.5E-11 69.0 6.0 161 5-170 132-359 (641)
382 PRK01889 GTPase RsgA; Reviewed 98.3 3.5E-06 7.7E-11 68.3 8.0 84 75-164 109-193 (356)
383 PRK13796 GTPase YqeH; Provisio 98.3 8.3E-06 1.8E-10 66.4 10.0 92 67-166 58-157 (365)
384 TIGR01425 SRP54_euk signal rec 98.2 2.1E-05 4.6E-10 64.8 11.4 86 54-149 182-273 (429)
385 TIGR00157 ribosome small subun 98.2 2.5E-06 5.4E-11 65.7 5.6 56 8-67 122-183 (245)
386 COG3523 IcmF Type VI protein s 98.2 1.2E-05 2.6E-10 73.2 9.6 115 9-125 128-270 (1188)
387 TIGR03597 GTPase_YqeH ribosome 98.2 4.9E-06 1.1E-10 67.6 6.6 59 7-68 155-217 (360)
388 PRK13796 GTPase YqeH; Provisio 98.2 3.5E-06 7.7E-11 68.6 5.7 57 7-66 161-221 (365)
389 COG0523 Putative GTPases (G3E 98.1 8.5E-05 1.8E-09 59.3 12.7 89 55-151 85-185 (323)
390 PRK12727 flagellar biosynthesi 98.1 0.00014 3.1E-09 61.3 14.2 138 7-156 351-523 (559)
391 COG1162 Predicted GTPases [Gen 98.1 6.7E-06 1.5E-10 64.1 5.3 59 8-69 166-230 (301)
392 COG1419 FlhF Flagellar GTP-bin 98.1 0.00027 5.9E-09 57.4 14.5 138 6-156 203-377 (407)
393 KOG3859 Septins (P-loop GTPase 98.1 1.8E-05 3.9E-10 60.7 7.4 60 5-64 41-104 (406)
394 PRK11537 putative GTP-binding 98.1 0.00014 3.1E-09 58.1 12.8 85 55-149 91-186 (318)
395 cd01854 YjeQ_engC YjeQ/EngC. 98.1 9.7E-06 2.1E-10 63.9 5.9 60 7-69 162-227 (287)
396 KOG1534 Putative transcription 98.0 1.5E-05 3.2E-10 58.8 6.0 70 56-125 99-178 (273)
397 PRK14722 flhF flagellar biosyn 98.0 9.9E-05 2.1E-09 60.0 11.2 138 6-149 137-315 (374)
398 PRK14721 flhF flagellar biosyn 98.0 0.00023 5E-09 58.8 12.9 138 7-156 192-365 (420)
399 PRK00098 GTPase RsgA; Reviewed 98.0 1.5E-05 3.3E-10 63.1 5.8 57 8-67 166-228 (298)
400 KOG4273 Uncharacterized conser 98.0 5.1E-05 1.1E-09 57.4 8.1 118 6-125 4-123 (418)
401 KOG1424 Predicted GTP-binding 98.0 9.4E-06 2E-10 67.0 4.5 57 6-66 314-370 (562)
402 cd03115 SRP The signal recogni 98.0 0.0001 2.2E-09 53.7 9.5 83 55-147 83-171 (173)
403 PF02492 cobW: CobW/HypB/UreG, 97.9 2.4E-05 5.1E-10 57.3 5.9 80 55-140 85-169 (178)
404 COG1162 Predicted GTPases [Gen 97.9 6.3E-05 1.4E-09 58.8 8.4 92 71-165 72-164 (301)
405 PRK13695 putative NTPase; Prov 97.9 0.00047 1E-08 50.2 12.3 22 7-28 1-22 (174)
406 PF03266 NTPase_1: NTPase; In 97.9 0.00015 3.2E-09 52.6 9.4 135 8-156 1-163 (168)
407 PRK11889 flhF flagellar biosyn 97.9 0.00019 4.2E-09 58.5 10.4 139 6-156 241-416 (436)
408 cd03114 ArgK-like The function 97.9 0.00024 5.2E-09 50.4 9.5 58 54-122 91-148 (148)
409 PF00448 SRP54: SRP54-type pro 97.8 0.0002 4.4E-09 53.2 9.1 90 55-156 84-179 (196)
410 PRK14723 flhF flagellar biosyn 97.8 0.0002 4.3E-09 63.0 10.1 139 8-156 187-362 (767)
411 PRK00771 signal recognition pa 97.8 5.6E-05 1.2E-09 62.7 6.3 83 56-149 177-266 (437)
412 cd03222 ABC_RNaseL_inhibitor T 97.8 0.00045 9.8E-09 50.5 10.1 87 8-105 27-118 (177)
413 PRK06995 flhF flagellar biosyn 97.8 0.0006 1.3E-08 57.3 12.0 103 56-170 336-449 (484)
414 KOG0469 Elongation factor 2 [T 97.8 0.00014 3E-09 60.3 7.8 129 5-137 18-177 (842)
415 PF06858 NOG1: Nucleolar GTP-b 97.7 0.0002 4.3E-09 41.6 6.1 48 74-122 9-58 (58)
416 PRK05703 flhF flagellar biosyn 97.7 0.00076 1.7E-08 56.1 12.1 90 55-156 300-396 (424)
417 cd02038 FleN-like FleN is a me 97.7 0.00025 5.5E-09 49.7 7.5 106 11-124 5-110 (139)
418 PF11111 CENP-M: Centromere pr 97.7 0.0032 6.9E-08 45.3 12.8 143 1-167 10-152 (176)
419 PRK10867 signal recognition pa 97.7 0.00054 1.2E-08 56.9 10.0 86 55-150 184-275 (433)
420 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.00065 1.4E-08 43.8 8.6 69 9-91 2-71 (99)
421 cd02042 ParA ParA and ParB of 97.6 0.00066 1.4E-08 44.9 8.6 82 9-102 2-84 (104)
422 PRK12724 flagellar biosynthesi 97.6 0.00087 1.9E-08 55.2 10.6 133 7-149 224-393 (432)
423 TIGR00959 ffh signal recogniti 97.6 0.0016 3.4E-08 54.2 11.6 86 55-150 183-274 (428)
424 KOG2484 GTPase [General functi 97.6 7.4E-05 1.6E-09 60.0 3.6 57 5-65 251-307 (435)
425 TIGR02475 CobW cobalamin biosy 97.5 0.0018 4E-08 52.3 11.2 22 8-29 6-27 (341)
426 PRK12723 flagellar biosynthesi 97.5 0.0041 8.9E-08 51.0 13.0 139 6-156 174-351 (388)
427 cd00009 AAA The AAA+ (ATPases 97.5 0.0011 2.5E-08 45.9 8.7 26 6-31 19-44 (151)
428 COG3640 CooC CO dehydrogenase 97.5 0.00065 1.4E-08 51.2 7.3 60 57-123 136-197 (255)
429 PRK06731 flhF flagellar biosyn 97.4 0.0027 5.9E-08 49.5 10.8 138 7-157 76-251 (270)
430 PRK12726 flagellar biosynthesi 97.4 0.0012 2.6E-08 53.7 9.0 91 55-157 286-382 (407)
431 KOG0459 Polypeptide release fa 97.4 0.00019 4.2E-09 57.9 4.3 155 5-161 78-279 (501)
432 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.0031 6.7E-08 44.4 10.1 23 8-30 28-50 (144)
433 PF13555 AAA_29: P-loop contai 97.3 0.00027 5.9E-09 42.0 3.1 21 8-28 25-45 (62)
434 PF13207 AAA_17: AAA domain; P 97.3 0.00024 5.2E-09 48.3 3.2 22 8-29 1-22 (121)
435 cd03111 CpaE_like This protein 97.3 0.0019 4.2E-08 43.0 7.5 100 12-120 6-106 (106)
436 KOG2485 Conserved ATP/GTP bind 97.3 0.00064 1.4E-08 53.2 5.8 61 4-65 141-206 (335)
437 cd03110 Fer4_NifH_child This p 97.3 0.0031 6.8E-08 46.0 9.3 85 53-146 91-175 (179)
438 TIGR00235 udk uridine kinase. 97.3 0.00033 7.2E-09 52.5 4.1 29 1-29 1-29 (207)
439 PRK08118 topology modulation p 97.3 0.00025 5.5E-09 51.3 3.3 23 7-29 2-24 (167)
440 TIGR00150 HI0065_YjeE ATPase, 97.3 0.0017 3.6E-08 45.1 7.0 24 7-30 23-46 (133)
441 COG0563 Adk Adenylate kinase a 97.2 0.00027 5.9E-09 51.7 3.1 23 7-29 1-23 (178)
442 PRK07261 topology modulation p 97.2 0.00029 6.4E-09 51.2 3.0 23 7-29 1-23 (171)
443 PF13671 AAA_33: AAA domain; P 97.2 0.00032 6.8E-09 49.1 3.0 21 9-29 2-22 (143)
444 COG1116 TauB ABC-type nitrate/ 97.2 0.00031 6.7E-09 53.4 3.0 22 9-30 32-53 (248)
445 PF00005 ABC_tran: ABC transpo 97.1 0.00042 9.2E-09 48.2 3.1 23 8-30 13-35 (137)
446 PRK10646 ADP-binding protein; 97.1 0.0042 9.1E-08 44.1 8.0 23 8-30 30-52 (153)
447 COG1136 SalX ABC-type antimicr 97.1 0.00043 9.4E-09 52.2 3.0 23 8-30 33-55 (226)
448 KOG1533 Predicted GTPase [Gene 97.1 0.00072 1.6E-08 50.9 4.0 68 55-124 97-176 (290)
449 COG0802 Predicted ATPase or ki 97.1 0.0032 6.9E-08 44.2 6.9 24 8-31 27-50 (149)
450 cd02019 NK Nucleoside/nucleoti 97.1 0.00064 1.4E-08 41.5 3.1 21 9-29 2-22 (69)
451 PRK10751 molybdopterin-guanine 97.1 0.00068 1.5E-08 49.2 3.7 29 1-29 1-29 (173)
452 COG1126 GlnQ ABC-type polar am 97.0 0.00077 1.7E-08 50.3 3.7 23 8-30 30-52 (240)
453 PF13521 AAA_28: AAA domain; P 97.0 0.0004 8.6E-09 50.0 2.2 22 8-29 1-22 (163)
454 KOG0780 Signal recognition par 97.0 0.0009 1.9E-08 53.9 4.2 42 52-93 181-228 (483)
455 COG1120 FepC ABC-type cobalami 97.0 0.00065 1.4E-08 52.3 3.0 21 8-28 30-50 (258)
456 smart00382 AAA ATPases associa 97.0 0.00081 1.8E-08 46.2 3.3 27 7-33 3-29 (148)
457 cd02036 MinD Bacterial cell di 97.0 0.036 7.8E-07 40.1 12.1 84 56-146 64-147 (179)
458 KOG0446 Vacuolar sorting prote 96.9 0.00045 9.8E-09 60.2 2.2 121 3-125 26-213 (657)
459 cd03238 ABC_UvrA The excision 96.9 0.00086 1.9E-08 49.0 3.3 21 7-27 22-42 (176)
460 PRK04195 replication factor C 96.9 0.019 4.1E-07 48.8 11.8 25 6-30 39-63 (482)
461 PTZ00088 adenylate kinase 1; P 96.9 0.00099 2.1E-08 50.8 3.7 28 1-28 1-28 (229)
462 PRK05416 glmZ(sRNA)-inactivati 96.9 0.021 4.5E-07 45.1 11.1 75 7-107 7-83 (288)
463 cd00071 GMPK Guanosine monopho 96.9 0.00088 1.9E-08 46.8 3.1 21 9-29 2-22 (137)
464 PF02367 UPF0079: Uncharacteri 96.9 0.0015 3.4E-08 44.6 4.2 24 7-30 16-39 (123)
465 cd00267 ABC_ATPase ABC (ATP-bi 96.9 0.016 3.5E-07 41.3 9.8 23 8-30 27-49 (157)
466 PRK10078 ribose 1,5-bisphospho 96.9 0.00083 1.8E-08 49.5 3.1 22 8-29 4-25 (186)
467 COG1117 PstB ABC-type phosphat 96.9 0.0009 2E-08 49.8 3.1 23 5-27 32-54 (253)
468 COG3839 MalK ABC-type sugar tr 96.9 0.00079 1.7E-08 53.9 3.0 22 9-30 32-53 (338)
469 PF00004 AAA: ATPase family as 96.9 0.00098 2.1E-08 45.7 3.2 22 9-30 1-22 (132)
470 PRK01889 GTPase RsgA; Reviewed 96.9 0.0011 2.5E-08 53.8 3.9 25 7-31 196-220 (356)
471 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00096 2.1E-08 44.4 2.9 21 7-27 16-36 (107)
472 COG0396 sufC Cysteine desulfur 96.9 0.0016 3.5E-08 49.0 4.2 22 9-30 33-54 (251)
473 COG1121 ZnuC ABC-type Mn/Zn tr 96.9 0.0009 2E-08 51.3 3.0 22 8-29 32-53 (254)
474 PRK05480 uridine/cytidine kina 96.9 0.0014 3E-08 49.2 4.0 26 4-29 4-29 (209)
475 PF07015 VirC1: VirC1 protein; 96.9 0.017 3.7E-07 43.8 9.6 103 54-161 83-187 (231)
476 COG0194 Gmk Guanylate kinase [ 96.8 0.0007 1.5E-08 49.2 2.1 25 6-30 4-28 (191)
477 TIGR02322 phosphon_PhnN phosph 96.8 0.001 2.3E-08 48.5 3.1 22 8-29 3-24 (179)
478 cd01131 PilT Pilus retraction 96.8 0.0084 1.8E-07 44.7 8.0 22 9-30 4-25 (198)
479 KOG3929 Uncharacterized conser 96.8 0.00057 1.2E-08 52.2 1.7 163 5-177 44-256 (363)
480 PRK06217 hypothetical protein; 96.8 0.0011 2.4E-08 48.7 3.3 23 7-29 2-24 (183)
481 PF13238 AAA_18: AAA domain; P 96.8 0.001 2.2E-08 45.5 2.9 21 9-29 1-21 (129)
482 COG3845 ABC-type uncharacteriz 96.8 0.013 2.9E-07 48.8 9.6 50 71-122 151-201 (501)
483 PF03205 MobB: Molybdopterin g 96.8 0.0012 2.7E-08 46.3 3.2 22 8-29 2-23 (140)
484 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.8 0.0012 2.5E-08 49.9 3.3 23 8-30 32-54 (218)
485 KOG1424 Predicted GTP-binding 96.8 0.0031 6.7E-08 52.6 5.8 79 67-152 164-244 (562)
486 cd01130 VirB11-like_ATPase Typ 96.8 0.0012 2.7E-08 48.6 3.3 25 6-30 25-49 (186)
487 TIGR03263 guanyl_kin guanylate 96.8 0.0012 2.6E-08 48.2 3.1 22 8-29 3-24 (180)
488 COG0541 Ffh Signal recognition 96.8 0.0054 1.2E-07 50.4 6.9 64 55-125 183-253 (451)
489 cd03225 ABC_cobalt_CbiO_domain 96.8 0.0013 2.8E-08 49.4 3.3 23 8-30 29-51 (211)
490 PRK03839 putative kinase; Prov 96.8 0.0013 2.9E-08 48.1 3.2 22 8-29 2-23 (180)
491 COG0552 FtsY Signal recognitio 96.8 0.016 3.5E-07 46.1 9.3 143 5-160 138-327 (340)
492 PRK14530 adenylate kinase; Pro 96.8 0.0013 2.9E-08 49.6 3.3 22 7-28 4-25 (215)
493 TIGR00960 3a0501s02 Type II (G 96.8 0.0013 2.8E-08 49.6 3.2 23 8-30 31-53 (216)
494 cd03226 ABC_cobalt_CbiO_domain 96.8 0.0013 2.9E-08 49.1 3.2 23 8-30 28-50 (205)
495 COG3840 ThiQ ABC-type thiamine 96.8 0.0014 3E-08 47.7 3.1 22 8-29 27-48 (231)
496 TIGR01166 cbiO cobalt transpor 96.8 0.0013 2.7E-08 48.6 3.0 23 8-30 20-42 (190)
497 cd03261 ABC_Org_Solvent_Resist 96.8 0.0014 2.9E-08 50.2 3.3 23 8-30 28-50 (235)
498 cd02023 UMPK Uridine monophosp 96.7 0.0014 3E-08 48.7 3.1 21 9-29 2-22 (198)
499 cd03265 ABC_DrrA DrrA is the A 96.7 0.0015 3.2E-08 49.4 3.3 22 8-29 28-49 (220)
500 PRK14738 gmk guanylate kinase; 96.7 0.0024 5.3E-08 47.9 4.4 25 5-29 12-36 (206)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-44 Score=253.76 Aligned_cols=188 Identities=49% Similarity=0.847 Sum_probs=177.5
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccE
Q 028283 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.++|.+||+|+|+.|||||.|+.||.++.+.+.+..|.|+++..+.+.+++..+.+++|||+|++++++...+||+++|+
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCCCCHHHHH
Q 028283 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160 (211)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~ 160 (211)
+|+|||+++.+||.++..|+.++.++...++|.++|+||+|+.+...++.++++.|+.+++.+ ++++||+++.|++++|
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F 164 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAF 164 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHH
Confidence 999999999999999999999999999989999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCCeEEee
Q 028283 161 IKTAAKILQNIQEGALDAVNDQSGIKVGY 189 (211)
Q Consensus 161 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 189 (211)
..|...+..+.............++.++.
T Consensus 165 ~~la~~lk~~~~~~~~~~~~~~~~~ql~~ 193 (205)
T KOG0084|consen 165 LTLAKELKQRKGLHVKWSTASLESVQLKG 193 (205)
T ss_pred HHHHHHHHHhcccCCCCCcCCCCceeeCC
Confidence 99999999999887777654444554443
No 2
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.2e-42 Score=239.99 Aligned_cols=189 Identities=79% Similarity=1.258 Sum_probs=179.3
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhcccc
Q 028283 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|.|.+.+|++++|+.|||||+|+.+|++..|.+.+..|.|+++..+.+++++..+++++|||+|++.+++....||+.+-
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028283 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
++|+|||++.+++|.++..|+..++.+...+..+++++||+|+...+.++.+|++.|++++++.++++||++++++++.|
T Consensus 81 GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred ceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence 99999999999999999999999999987899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCC-eEEee
Q 028283 161 IKTAAKILQNIQEGALDAVNDQSG-IKVGY 189 (211)
Q Consensus 161 ~~i~~~i~~~~~~~~~~~~~~~~~-~~~~~ 189 (211)
......++.....+-......+++ ++.+.
T Consensus 161 ~nta~~Iy~~~q~g~~~~~~~~k~k~k~~p 190 (216)
T KOG0098|consen 161 INTAKEIYRKIQDGVFDDINESKGKIKIGP 190 (216)
T ss_pred HHHHHHHHHHHHhcccccccccccceeecc
Confidence 999999999999877776555555 66553
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-41 Score=239.84 Aligned_cols=198 Identities=41% Similarity=0.738 Sum_probs=176.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+|+|..+||||||+.|+..+.|.+...+++|..+..+++.+++..+.+.||||+|+++|+++.+.||++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+|||+++.+||..+..|+..+.+...+++-+.+++||+|+.+.+++..+++..++...++.++++||+++.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999888888888999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccCCCCCeEEeecccCCCCCCCCCccccCCCCCC
Q 028283 164 AAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 211 (211)
Q Consensus 164 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 211 (211)
.+.+.............+..++.+..-. .+...++|||
T Consensus 163 a~~lp~~~~~~~~~~~~~~~g~~l~~~~----------~~~~~~~~C~ 200 (200)
T KOG0092|consen 163 AEKLPCSDPQERQGLPNRRQGVDLNSNQ----------EPARPSGCCA 200 (200)
T ss_pred HHhccCccccccccccccccceecccCC----------CCcCcCCcCC
Confidence 9999877766554322222333222111 4667788996
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.6e-40 Score=237.12 Aligned_cols=176 Identities=52% Similarity=0.972 Sum_probs=169.5
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccE
Q 028283 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+|++.+||+++|+++||||+++.+|..+.+...+..+.|+++..+++.+++..+.+++|||+|+++++.....|++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+++|||+++..+|+++..|+..+.++....+|.++|+||+|+...++++.+.++++|.+++++|+++||++|.||+++|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccc
Q 028283 162 KTAAKILQNIQEGALD 177 (211)
Q Consensus 162 ~i~~~i~~~~~~~~~~ 177 (211)
.|.+.++.+.++.+.+
T Consensus 168 ~La~~i~~k~~~~~~~ 183 (207)
T KOG0078|consen 168 SLARDILQKLEDAELE 183 (207)
T ss_pred HHHHHHHhhcchhhhc
Confidence 9999999877665433
No 5
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=6.9e-39 Score=241.05 Aligned_cols=210 Identities=85% Similarity=1.326 Sum_probs=190.5
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhcccc
Q 028283 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|++++.+||+|+|++|+|||||+++|+...+.+.+.++.+.++....+.+++..+.+.+|||+|++.+..++..++..+|
T Consensus 1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 89999999999999999999999999999988888888888888888889998899999999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028283 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
++|+|||++++.++..+..|+..+......+.|+++++||+|+...+.++.+++.++++.++++++++|++++.|++++|
T Consensus 81 ~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f 160 (210)
T PLN03108 81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160 (210)
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999988876666689999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCCeEEeecccCCCCCCCCCccccCCCCC
Q 028283 161 IKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 210 (211)
Q Consensus 161 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 210 (211)
.++++.+++...+.......++.++....+.-++.+..+.+..++.+|||
T Consensus 161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
T PLN03108 161 IKTAAKIYKKIQDGVFDVSNESYGIKVGYGAIPGASGGRDGTSSQGGGCC 210 (210)
T ss_pred HHHHHHHHHHhhhccccccccccccccccCCCCCCCCCccccccCCCCCC
Confidence 99999998887766666666678887777777777777889999999999
No 6
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-39 Score=231.21 Aligned_cols=168 Identities=41% Similarity=0.702 Sum_probs=159.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+||+++|..+|||||||+|++.+.+...|.++.|+++...++.+.+.++++++|||+|+|+++++.+.|+++++++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCC-CCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028283 85 VYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
|||+++..+|++...|++.+...... ++-+++|+||.||.+.++++.++++..++++++.|+++|++.|.||.++|..|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI 180 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI 180 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence 99999999999999999999888875 47788889999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHh
Q 028283 164 AAKILQNIQ 172 (211)
Q Consensus 164 ~~~i~~~~~ 172 (211)
...+.....
T Consensus 181 aa~l~~~~~ 189 (221)
T KOG0094|consen 181 AAALPGMEV 189 (221)
T ss_pred HHhccCccc
Confidence 888766655
No 7
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=7.6e-40 Score=224.92 Aligned_cols=200 Identities=44% Similarity=0.795 Sum_probs=173.9
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEE
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+++.+||+++|.+|+|||||+.+|....+.+..+.+.|+++..+.+.+++..+.+.||||+|+++++.+.+.||+.+.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 83 LLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
|+|||++.+++|..+..|++++..+.. +++-.++|+||+|...++.++.++..+|++++++.|+++||++.++++..|+
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe 167 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE 167 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence 999999999999999999999988875 6777899999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCCeEEeecccCCCCCCCCCccccCCCCCC
Q 028283 162 KTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 211 (211)
Q Consensus 162 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 211 (211)
.++.++++...-.+... ...+..++..+ ....+.+.++|||
T Consensus 168 elveKIi~tp~l~~~~n--~~~~~~i~~~p-------~~~~~~~~g~~Cs 208 (209)
T KOG0080|consen 168 ELVEKIIETPSLWEEGN--SSAGLDIASDP-------DGEASAHQGGCCS 208 (209)
T ss_pred HHHHHHhcCcchhhccC--CccccccccCC-------CcccccccCCccC
Confidence 99999976544333222 22223333222 2333445677986
No 8
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-39 Score=232.99 Aligned_cols=210 Identities=50% Similarity=0.844 Sum_probs=182.7
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccE
Q 028283 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+|||.+||+++|++++|||-|+.||....+.....+|.|+++....+.++++.+..+||||+|+++|++...+||+.+.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+++|||++...+|+++..|+.+++.+...++++++|+||+||..-+.++.++++.++...+..++++||+++.|++++|.
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE 169 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCC---eEEeecccCCCCCCCCCccccCCCCCC
Q 028283 162 KTAAKILQNIQEGALDAVNDQSG---IKVGYGRGQGPSGARDGTVSQRGGCCS 211 (211)
Q Consensus 162 ~i~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~cc~ 211 (211)
.++..++....+........... ..-+......+......++.+++.|||
T Consensus 170 ~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~cc~ 222 (222)
T KOG0087|consen 170 RVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVHPTSEEPFSPTKKSGCCS 222 (222)
T ss_pred HHHHHHHHHHHHHhhhccccccccCCCCCCcccccccCCccccccccCCCCCC
Confidence 99999998888765554433211 111112222222233335555667775
No 9
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-38 Score=216.44 Aligned_cols=208 Identities=54% Similarity=0.891 Sum_probs=190.7
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccE
Q 028283 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+|||.+|++++|+.|.|||.|+++|...++.....+++|+++..+.+++.++.+.++||||+|++++++....|++.+-+
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
.++|||++++++|+.+..|+..++....+++-+++++||.|+.+.++++..++..|+.+..+.+.++|+++|+|+++.|-
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl 164 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 164 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCCeEEeecccCCCCCCCCCccccCCCC
Q 028283 162 KTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGC 209 (211)
Q Consensus 162 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 209 (211)
...+.++.+.+.++..+.+..+||--|+-.=-..-.+++-....++.|
T Consensus 165 ~c~~tIl~kIE~GElDPer~gsGIQYGdaslR~l~~p~s~r~~n~~~c 212 (214)
T KOG0086|consen 165 KCARTILNKIESGELDPERMGSGIQYGDASLRQLRQPRSARAVNPQPC 212 (214)
T ss_pred HHHHHHHHHHhhcCCCHHHcccccccchhhhhccCCcchhccCCCCCC
Confidence 999999999999999999999999877755333333332233444455
No 10
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=5.4e-37 Score=231.68 Aligned_cols=207 Identities=48% Similarity=0.821 Sum_probs=172.2
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEE
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++++...+..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 45889999999999999999999999998888888999999888899999999999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028283 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|+|||++++.+++.+..|+..+......+.|+++++||+|+........+++..++...+++++++||+++.|++++|+.
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776668999999999999877777888888999889999999999999999999999
Q ss_pred HHHHHHHHHhhccccccCCCCCeEEeecccCCCCCCCCCccccCCCCCC
Q 028283 163 TAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 211 (211)
Q Consensus 163 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 211 (211)
|...+.+..............+ .+....+......+.++.++++|||
T Consensus 169 l~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~c~ 215 (216)
T PLN03110 169 ILLEIYHIISKKALAAQEAAAN--SGLPGQGTTINVADTSGNNKRGCCS 215 (216)
T ss_pred HHHHHHHHhhccccccccCccc--ccCcCcCCcccccCccCCCCCCCcC
Confidence 9999988655433332221111 1111112222223345778889996
No 11
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.5e-38 Score=216.78 Aligned_cols=206 Identities=44% Similarity=0.762 Sum_probs=182.9
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCcchhhhchHHHhccccE
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+.|+++++|+|++-+|||+|++.+..+++.+-..|++|+++....+.+ ++..+.+++|||+|++++++.+..|+++.-+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 368999999999999999999999999999999999999999998877 6778899999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcC-CC-CeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028283 82 ALLVYDITRRETFNHLSSWLEDARQHAN-PN-MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159 (211)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~-~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 159 (211)
+++|||+++.++|+++..|+.+...+.. +. +-+++|++|+|+...++++.+++++++..++..|+++|+++|.|+++.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 9999999999999999999998877665 44 446788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCeEEeecccCCCCCCCCCccccCCCCCC
Q 028283 160 FIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 211 (211)
Q Consensus 160 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 211 (211)
|..|.+.+.....+++....+.-.++|.+.+... .. +..-+.+.+.|||
T Consensus 165 F~mlaqeIf~~i~qGeik~edgw~gvKSsrpn~i-~~--s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPNQI-PR--SPSRKQPSKPCQC 213 (213)
T ss_pred HHHHHHHHHHHHhcCceeeeeccccccccCCCcC-CC--cccccCCCCCCCC
Confidence 9999999999999999999998888888444422 22 2333444446877
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.5e-36 Score=224.14 Aligned_cols=170 Identities=38% Similarity=0.744 Sum_probs=156.8
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccE
Q 028283 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.+++.+||+++|..|||||||+++|....+...+.++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|+
T Consensus 2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 46788999999999999999999999998888888888888888888899999999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|||++++.+++++..|+..+.... ++.|++||+||.|+...+.++.++++.+++..+++++++||++|.|++++|+
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT 160 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 999999999999999999999997664 5899999999999987778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 028283 162 KTAAKILQNIQ 172 (211)
Q Consensus 162 ~i~~~i~~~~~ 172 (211)
+|.+.+..+..
T Consensus 161 ~l~~~i~~~~~ 171 (189)
T cd04121 161 ELARIVLMRHG 171 (189)
T ss_pred HHHHHHHHhcC
Confidence 99988865444
No 13
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=9.2e-36 Score=221.98 Aligned_cols=165 Identities=45% Similarity=0.806 Sum_probs=152.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+.|+++|..|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999999888899999998888999999999999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCcEEEEeCCCCCCHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|++++.+++.+..|+..+......+.|+++|+||+|+...+++..+++.+++.+. ++.++++||++|.|++++|++|.+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887766568999999999999877788888888998875 788999999999999999999999
Q ss_pred HHHHHH
Q 028283 166 KILQNI 171 (211)
Q Consensus 166 ~i~~~~ 171 (211)
.+....
T Consensus 161 ~~~~~~ 166 (202)
T cd04120 161 DILKKM 166 (202)
T ss_pred HHHHhC
Confidence 887653
No 14
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=9.2e-36 Score=222.45 Aligned_cols=178 Identities=44% Similarity=0.750 Sum_probs=159.0
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccE
Q 028283 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.+++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|+
T Consensus 2 ~~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ 81 (199)
T cd04110 2 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHG 81 (199)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence 35678999999999999999999999999888888888888888888888888899999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|||+++++++..+..|+..+.... ...|++||+||+|+.+...+..++...++...+.+++++|+++|.|++++|+
T Consensus 82 iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 82 VIVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFN 160 (199)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence 999999999999999999999886654 4789999999999987667777888889988899999999999999999999
Q ss_pred HHHHHHHHHHhhccccccC
Q 028283 162 KTAAKILQNIQEGALDAVN 180 (211)
Q Consensus 162 ~i~~~i~~~~~~~~~~~~~ 180 (211)
+|.+.++....+.......
T Consensus 161 ~l~~~~~~~~~~~~~~~~~ 179 (199)
T cd04110 161 CITELVLRAKKDNLAKQQQ 179 (199)
T ss_pred HHHHHHHHhhhccCccccc
Confidence 9999998776665544443
No 15
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-37 Score=208.82 Aligned_cols=175 Identities=47% Similarity=0.845 Sum_probs=165.7
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccE
Q 028283 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+|.+.+||+++|..|+|||.|+++|..+-+++....+.|+++-++++.+++.++.+++|||+|++++++....|++.+++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|||++-..+|..+.+|+.++..+...++--|+|+||.|+.+.++++...+++|.......|.++||++.+|++.+|.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 99999999999999999999999999887888899999999998889998999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccc
Q 028283 162 KTAAKILQNIQEGAL 176 (211)
Q Consensus 162 ~i~~~i~~~~~~~~~ 176 (211)
.+.-.+....+..+.
T Consensus 163 ~~a~rli~~ar~~d~ 177 (213)
T KOG0095|consen 163 DLACRLISEARQNDL 177 (213)
T ss_pred HHHHHHHHHHHhccc
Confidence 999888777765443
No 16
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.5e-35 Score=221.66 Aligned_cols=173 Identities=38% Similarity=0.667 Sum_probs=153.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+++|++|||||||+++|+.+.+...+.++.+.++....+.++ +..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999888888999988888888887 7889999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCCCCCHHHHH
Q 028283 86 YDITRRETFNHLSSWLEDARQHA----NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAF 160 (211)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~ 160 (211)
||++++.+++.+..|+..+.... ..+.|+++|+||+|+........+++..++...+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999988876532 2578999999999997656678888999999988 689999999999999999
Q ss_pred HHHHHHHHHHHhhcccccc
Q 028283 161 IKTAAKILQNIQEGALDAV 179 (211)
Q Consensus 161 ~~i~~~i~~~~~~~~~~~~ 179 (211)
++|.+.+.+..........
T Consensus 161 ~~l~~~l~~~~~~~~~~~~ 179 (201)
T cd04107 161 RFLVKNILANDKNLQQAET 179 (201)
T ss_pred HHHHHHHHHhchhhHhhcC
Confidence 9999998876554444443
No 17
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.7e-35 Score=220.82 Aligned_cols=189 Identities=52% Similarity=0.890 Sum_probs=164.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+.+||+|+|++|||||||+++|+...+...+.++.+.++....+.+ ++..+.+.+|||+|++.+...+..+++.+|++|
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 4689999999999999999999999988888888888888877777 466789999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
+|||++++.++.++..|+..+..... ...|+++++||.|+.+...+..++...+++.++++++++|++++.|++++|++
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998876543 45788999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccCCCCCeEEeecccC
Q 028283 163 TAAKILQNIQEGALDAVNDQSGIKVGYGRGQ 193 (211)
Q Consensus 163 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (211)
|.+.+.+++..+.......-.+++.+..++.
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (211)
T cd04111 161 LTQEIYERIKRGELCALDGWDGVKSGFPAGR 191 (211)
T ss_pred HHHHHHHHhhcCCCCccccccccccCCCccc
Confidence 9999999887776555555555555555533
No 18
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=7.1e-37 Score=207.55 Aligned_cols=169 Identities=49% Similarity=0.822 Sum_probs=161.0
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccE
Q 028283 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.|+..++.+++|++|+|||+|+.+|.+..|+..|..+.|.++.++++.++|..+.+.|||++|+++++.....|++..++
T Consensus 4 ~~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 4 DYDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred cHHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|||.++.++|.++..|+++++.... ..|-++|+||.|.++.+.+..++++.|+...++.+|++|+++.+|+++.|.
T Consensus 84 v~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 84 VIVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EEEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence 9999999999999999999999988765 889999999999999888899999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 028283 162 KTAAKILQNI 171 (211)
Q Consensus 162 ~i~~~i~~~~ 171 (211)
-|.+.+++..
T Consensus 163 cit~qvl~~k 172 (198)
T KOG0079|consen 163 CITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHH
Confidence 9998887766
No 19
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3.4e-36 Score=211.52 Aligned_cols=169 Identities=38% Similarity=0.699 Sum_probs=158.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+||+++|++|+|||||++++...++...+..++|.++..+.+.+++..+.++||||+|++++.++.-.+++.+|.+++
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl 87 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL 87 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCC--CCCCHHHHHHHHHHc-CCcEEEEeCCCCCCHH
Q 028283 85 VYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHR--RAVSKEEGEQFAKEN-GLLFLEASARTAQNVE 157 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~ 157 (211)
|||++++.+|+.+..|..++..... ...|++|++||.|+.+. ++++.+.+..+|... +++||++||+...||+
T Consensus 88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~ 167 (210)
T KOG0394|consen 88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVD 167 (210)
T ss_pred EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHH
Confidence 9999999999999999999877665 45899999999999763 788999999999985 5799999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 028283 158 EAFIKTAAKILQNIQE 173 (211)
Q Consensus 158 ~~~~~i~~~i~~~~~~ 173 (211)
++|+.+.+.++.....
T Consensus 168 ~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 168 EAFEEIARRALANEDR 183 (210)
T ss_pred HHHHHHHHHHHhccch
Confidence 9999999999887764
No 20
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.5e-34 Score=214.11 Aligned_cols=170 Identities=45% Similarity=0.754 Sum_probs=154.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999988878888888888888888888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|++++.++..+..|+..+......+.|+++++||.|+.+...+..+++..++...+++++++|++++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887766678999999999998777777788888888888999999999999999999999999
Q ss_pred HHHHHhhccc
Q 028283 167 ILQNIQEGAL 176 (211)
Q Consensus 167 i~~~~~~~~~ 176 (211)
+..+......
T Consensus 161 ~~~~~~~~~~ 170 (188)
T cd04125 161 IIKRLEEQEL 170 (188)
T ss_pred HHHHhhcCcC
Confidence 9876654433
No 21
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=6.8e-35 Score=219.63 Aligned_cols=187 Identities=31% Similarity=0.529 Sum_probs=153.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|||||||+++|..+.+.. ..++.+..+....+ ..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998864 46666666544432 4577999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------------------CCCCCHHHHHHHHHHcC-----
Q 028283 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-------------------RRAVSKEEGEQFAKENG----- 142 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~----- 142 (211)
|++++.++..+..|+..+......+.|+++|+||+|+.+ .+++..+++..++++.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999988888766556799999999999965 46778899999998876
Q ss_pred ---------CcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhccccccCCCCCeEEeecccCCCCCCCCCccccCCCCC
Q 028283 143 ---------LLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 210 (211)
Q Consensus 143 ---------~~~~~~s~~~~~~i~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 210 (211)
++|+++||++|.||+++|..+++.++....+...+..+.+-.+ . -.+-+++|++||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTV-----------N-LPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-----------c-CCCcccCCCCCC
Confidence 6799999999999999999999988876665555444322222 1 223467788898
No 22
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=6.3e-35 Score=216.48 Aligned_cols=167 Identities=39% Similarity=0.637 Sum_probs=147.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEe
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|.+|||||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 689999999999999999999988887777766554 3446688888899999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028283 88 ITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
++++.++..+..|+..+..... .+.|+++|+||+|+.....+...+...++...+++++++||++|.|++++|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988866542 5789999999999977777777788888888899999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 028283 165 AKILQNIQEGA 175 (211)
Q Consensus 165 ~~i~~~~~~~~ 175 (211)
+.+..+..++.
T Consensus 160 ~~l~~~~~~~~ 170 (190)
T cd04144 160 RALRQQRQGGQ 170 (190)
T ss_pred HHHHHhhcccC
Confidence 99887777654
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.2e-34 Score=210.60 Aligned_cols=164 Identities=68% Similarity=1.104 Sum_probs=151.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|++|+|||||+++|..+.+.+.+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 58999999999999999999999999888888888888888888899999999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028283 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
||++++.+++.+..|+..+......+.|+++++||+|+.+...+..+++..++...+++++++||++|.|++++|..+.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~ 161 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK 161 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887776678999999999999887778888999999999999999999999999999999998
Q ss_pred HHHH
Q 028283 166 KILQ 169 (211)
Q Consensus 166 ~i~~ 169 (211)
.+.+
T Consensus 162 ~~~~ 165 (166)
T cd04122 162 KIYQ 165 (166)
T ss_pred HHhh
Confidence 7754
No 24
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-35 Score=201.10 Aligned_cols=173 Identities=41% Similarity=0.790 Sum_probs=164.4
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccE
Q 028283 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.+++-+|++++|...+|||||+.++++..+.+.+..++|+++..+++--..+.+.+++|||+|+++++.+..++++.+++
T Consensus 17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg 96 (193)
T KOG0093|consen 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG 96 (193)
T ss_pred cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence 35788999999999999999999999999999999999999999988778888999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|++||+++.+++..+..|.-.+..+...+.|+|+++||||+..++.++.+.++.++.+.|+.+|++|++.+.|++++|+
T Consensus 97 fiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe 176 (193)
T KOG0093|consen 97 FILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFE 176 (193)
T ss_pred EEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHH
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 028283 162 KTAAKILQNIQEG 174 (211)
Q Consensus 162 ~i~~~i~~~~~~~ 174 (211)
.++..+-+.+.+.
T Consensus 177 ~lv~~Ic~kmses 189 (193)
T KOG0093|consen 177 RLVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHHhhhh
Confidence 9999888777654
No 25
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.8e-34 Score=217.49 Aligned_cols=168 Identities=26% Similarity=0.471 Sum_probs=149.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+++|+.|||||+|+++|..+.+...+.++.+..+.. .+.+++..+.+.||||+|++.+..++..+++.+|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 467899999999999999999999999999999998877654 5788999999999999999999999999999999999
Q ss_pred EEEeCCCHhHHHH-HHHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEe
Q 028283 84 LVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEAS 149 (211)
Q Consensus 84 ~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s 149 (211)
+|||++++.+|.. +..|+..+.... ++.|+++|+||+|+.+ ...++.+++++++..+++ .|+++|
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999998 478999887765 4789999999999964 256788999999999998 599999
Q ss_pred CCCCC-CHHHHHHHHHHHHHHHHhh
Q 028283 150 ARTAQ-NVEEAFIKTAAKILQNIQE 173 (211)
Q Consensus 150 ~~~~~-~i~~~~~~i~~~i~~~~~~ 173 (211)
|++|. |++++|..+...+.++...
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~~~~ 193 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNKLSP 193 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHhccc
Confidence 99998 8999999999988765443
No 26
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=214.13 Aligned_cols=170 Identities=38% Similarity=0.611 Sum_probs=149.9
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+++|.+|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 3468999999999999999999999988877777776665 455778898999999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
+|||++++.+++.+..|+..+..... .+.|+++++||+|+.+...+..+++..++...+.+++++||+++.|++++|++
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999988876543 58899999999999776667777888888888899999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 028283 163 TAAKILQNIQEG 174 (211)
Q Consensus 163 i~~~i~~~~~~~ 174 (211)
|.+.+....++.
T Consensus 162 l~~~l~~~~~~~ 173 (189)
T PTZ00369 162 LVREIRKYLKED 173 (189)
T ss_pred HHHHHHHHhhcc
Confidence 999987766544
No 27
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=4.5e-34 Score=215.74 Aligned_cols=164 Identities=35% Similarity=0.585 Sum_probs=149.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC-EEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999889999999998888888865 578999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028283 86 YDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
||+++++++.++..|+..+..... .+.|+++|+||.|+.+.+.+..++...++...+++++++||++|+|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999877653 35789999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028283 163 TAAKILQN 170 (211)
Q Consensus 163 i~~~i~~~ 170 (211)
|.+.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988764
No 28
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.8e-34 Score=213.19 Aligned_cols=165 Identities=47% Similarity=0.851 Sum_probs=148.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+|+|++|||||||+++|....+.. .+.++.+.++....+.+++..+.+.||||||++++...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988754 5667777777777788899999999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028283 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
||+++++++.++..|+..+......+.|+++++||.|+...+....++...++...+.+++++|+++|.|++++|++|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999988876668999999999999766667778888888888999999999999999999999999
Q ss_pred HHHHHH
Q 028283 166 KILQNI 171 (211)
Q Consensus 166 ~i~~~~ 171 (211)
.+....
T Consensus 161 ~~~~~~ 166 (191)
T cd04112 161 ELKHRK 166 (191)
T ss_pred HHHHhc
Confidence 887654
No 29
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.9e-34 Score=208.73 Aligned_cols=166 Identities=55% Similarity=0.986 Sum_probs=152.9
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
++.+||+++|++|+|||||+++|.+..+.+.+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 57899999999999999999999999999988999888888888888988899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+|||++++.++..+..|+..+......+.|+++++||+|+.+......+++..++...+.+++++|++++.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999887765689999999999998766777788888999999999999999999999999999
Q ss_pred HHHHHH
Q 028283 164 AAKILQ 169 (211)
Q Consensus 164 ~~~i~~ 169 (211)
.+.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 988754
No 30
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.2e-35 Score=196.23 Aligned_cols=207 Identities=60% Similarity=0.976 Sum_probs=186.8
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccE
Q 028283 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+|.|.+|-+++|+-|+|||.|++.|...++...-+.+.|+++....+.+.+.++.+++|||+|+++++.....|++.+.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
.++|||++.+.++.++..|+...+....++..+++++||.|+...+.+..+++++|+.+.++.|.++|+++|.++++.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCCeEEeecccCCCCCCCCCccccCCCC
Q 028283 162 KTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGC 209 (211)
Q Consensus 162 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 209 (211)
.-.+.+++...++....+..++|+-..-+.-.++.- ..+...+|.+|
T Consensus 167 e~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l-~se~~~~kd~c 213 (215)
T KOG0097|consen 167 ETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSL-SSEATGAKDQC 213 (215)
T ss_pred HHHHHHHHhhhcCcccccchhccCcCCCCCCCcccc-ccCCCCccccC
Confidence 999999999999999888888887544333222222 33445566678
No 31
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=5.6e-34 Score=209.55 Aligned_cols=168 Identities=41% Similarity=0.790 Sum_probs=151.1
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC----------CEEEEEEEEeCCCcchhhhch
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID----------GRPIKLQIWDTAGQESFRSIT 72 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~D~~G~~~~~~~~ 72 (211)
+++.+||+++|++|||||||+++|..+.+...+.++.+.++....+.+. +..+.+.+|||||++.+...+
T Consensus 1 ~~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 1 YDYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence 4678999999999999999999999999998888888888877666554 456889999999999999999
Q ss_pred HHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC
Q 028283 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR 151 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 151 (211)
..+++++|++|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++.+.+++++++||+
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 999999999999999999999999999999887654 3578999999999998777778888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 028283 152 TAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 152 ~~~~i~~~~~~i~~~i~~~ 170 (211)
++.|++++|++|.+.+.++
T Consensus 161 ~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 161 TGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999888654
No 32
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.6e-33 Score=204.98 Aligned_cols=167 Identities=85% Similarity=1.327 Sum_probs=153.9
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEE
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
|++.+||+|+|++|+|||||++++.+..+...+.++.+.++....+.+++....+.+||+||++++......+++.+|++
T Consensus 1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 67889999999999999999999999998888888888888888888899889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028283 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
++|||++++.++..+..|+..+.....++.|+++++||.|+.+...+..+++..++...++.++++|++++.|++++|.+
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999876677888888999999999999999999999999999
Q ss_pred HHHHHHH
Q 028283 163 TAAKILQ 169 (211)
Q Consensus 163 i~~~i~~ 169 (211)
+.+.+.+
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9888754
No 33
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.3e-33 Score=205.02 Aligned_cols=164 Identities=54% Similarity=0.949 Sum_probs=150.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
+.+||+++|++|||||||+++|.++.+...+.++.+.++....+.+++..+.+.+||+||++++...+..+++.+|++|+
T Consensus 1 ~~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 1 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 35899999999999999999999999888888888888888888889888999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028283 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
|||+++++++..+..|+..+......+.|+++++||.|+.....+..+++..++...+++++++|+++|.|++++|..|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 99999999999999999998776656799999999999987777778889999999999999999999999999999999
Q ss_pred HHHH
Q 028283 165 AKIL 168 (211)
Q Consensus 165 ~~i~ 168 (211)
+.+.
T Consensus 161 ~~~~ 164 (166)
T cd01869 161 REIK 164 (166)
T ss_pred HHHH
Confidence 8775
No 34
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=8.1e-34 Score=208.61 Aligned_cols=163 Identities=28% Similarity=0.519 Sum_probs=146.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+++|+.|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 46789999999999999999999999998888888876664 56788999999999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEe
Q 028283 84 LVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEAS 149 (211)
Q Consensus 84 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s 149 (211)
+|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+ ...++.+++++++++.++ +|+++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 99999999999997 78999987765 5799999999999964 245888999999999996 899999
Q ss_pred CCCCCC-HHHHHHHHHHHHH
Q 028283 150 ARTAQN-VEEAFIKTAAKIL 168 (211)
Q Consensus 150 ~~~~~~-i~~~~~~i~~~i~ 168 (211)
|+++.| ++++|+.+++.++
T Consensus 161 Ak~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 161 ALQSENSVRDIFHVATLACV 180 (182)
T ss_pred cCCCCCCHHHHHHHHHHHHh
Confidence 999998 9999999888543
No 35
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.1e-33 Score=206.49 Aligned_cols=166 Identities=33% Similarity=0.543 Sum_probs=148.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|.+|||||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999999888888877555 44577889899999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028283 86 YDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
||++++.++..+..|+..+..... .+.|+++|+||+|+.+.++++.+++..+++..+++++++||++|.|++++|++|+
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999999888776543 5899999999999987777888899999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 028283 165 AKILQNIQ 172 (211)
Q Consensus 165 ~~i~~~~~ 172 (211)
+.+.+...
T Consensus 161 ~~~~~~~~ 168 (172)
T cd04141 161 REIRRKES 168 (172)
T ss_pred HHHHHhcc
Confidence 88876444
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=3.4e-33 Score=202.69 Aligned_cols=162 Identities=43% Similarity=0.777 Sum_probs=148.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+|||||++.+...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888888888777778888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|++++++++.+..|+..+........|+++++||+|+.+.+....++..+++...+++++++|++++.|++++|+++.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999877665689999999999998776677788888888889999999999999999999999887
Q ss_pred HH
Q 028283 167 IL 168 (211)
Q Consensus 167 i~ 168 (211)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 64
No 37
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=2.3e-33 Score=202.81 Aligned_cols=160 Identities=43% Similarity=0.838 Sum_probs=147.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
++|+++|++|+|||||+++|..+.+.+.+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998888889898888888889998899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|++++++++.+..|+..+......+.|+++++||.|+...+.+..+++..+++..+.+++++||++|.|++++|.+|.++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999998877655579999999999998777788889999999899999999999999999999999865
No 38
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.5e-33 Score=206.07 Aligned_cols=159 Identities=33% Similarity=0.647 Sum_probs=143.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|+|||||+.++..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++++..++..+++.+|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 68999999999999999999999998888898887664 45778999999999999999999999999999999999999
Q ss_pred eCCCHhHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCC----------CCCHHHHHHHHHHcCC-cEEEEeCCCCC
Q 028283 87 DITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHRR----------AVSKEEGEQFAKENGL-LFLEASARTAQ 154 (211)
Q Consensus 87 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 154 (211)
|++++.+|+++ ..|+..+.... .+.|+++|+||+|+.+.+ .+..+++.+++...+. .++++||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999887665 489999999999996532 4778899999999988 59999999999
Q ss_pred CHHHHHHHHHHHH
Q 028283 155 NVEEAFIKTAAKI 167 (211)
Q Consensus 155 ~i~~~~~~i~~~i 167 (211)
||+++|+.+.+.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999876
No 39
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=3.6e-33 Score=210.43 Aligned_cols=165 Identities=27% Similarity=0.498 Sum_probs=142.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+|+|++|||||||+++|..+.+...+.++++..+. ..+.+++..+.+.||||+|++.+..++..+++.+|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999998888898877665 4578899999999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeCC
Q 028283 86 YDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASAR 151 (211)
Q Consensus 86 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 151 (211)
||++++++++.+. .|...+.. ..++.|+++|+||+|+.+. ..++.+++..++++.++ .|+++||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 9999999999985 56555544 3468999999999999642 13677889999999996 89999999
Q ss_pred CCCC-HHHHHHHHHHHHHHHHh
Q 028283 152 TAQN-VEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 152 ~~~~-i~~~~~~i~~~i~~~~~ 172 (211)
++.+ |+++|+.+....+.+..
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhccC
Confidence 9985 99999998887766544
No 40
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=4.5e-33 Score=201.94 Aligned_cols=164 Identities=58% Similarity=0.951 Sum_probs=150.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
++.+||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++++...+..+++.++++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 1 DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 46789999999999999999999999988888888898888888889998889999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+|||++++.++..+..|+..+......+.|+++++||.|+...+....++...++...+++++++||++|.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999887765579999999999998777777888889998888999999999999999999999
Q ss_pred HHHH
Q 028283 164 AAKI 167 (211)
Q Consensus 164 ~~~i 167 (211)
.+.+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 8765
No 41
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=6.2e-33 Score=206.27 Aligned_cols=166 Identities=33% Similarity=0.597 Sum_probs=145.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+|+|++|+|||||+++|+.+.+.. .+.++.+..+....+.+++..+.+.+||++|++++...+..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998875 5777888888778888999999999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC----CCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR----RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
||++++.++..+..|+..+.... .+.|+++|+||+|+... ..+..+++..++...+++++++|++++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998887653 47999999999998532 34455677788888889999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 028283 162 KTAAKILQNIQE 173 (211)
Q Consensus 162 ~i~~~i~~~~~~ 173 (211)
+|.+.+.++...
T Consensus 160 ~i~~~~~~~~~~ 171 (193)
T cd04118 160 KVAEDFVSRANN 171 (193)
T ss_pred HHHHHHHHhccc
Confidence 999999766543
No 42
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=9.1e-35 Score=199.53 Aligned_cols=170 Identities=35% Similarity=0.701 Sum_probs=160.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
+.+||+++|..=+|||||+-+++..+|......+..-.+..+.+++.+...++.||||+|+++|.++-+-||+..+++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 67999999999999999999999999999888888888888889999999999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028283 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
|||++|+.+|+.+..|..+++......+.++||+||+|+.++++++.++++.++...++.++++||+++.||.++|+.|.
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT 171 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence 99999999999999999999998887889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 028283 165 AKILQNIQEG 174 (211)
Q Consensus 165 ~~i~~~~~~~ 174 (211)
+++.+.....
T Consensus 172 ~~MiE~~s~~ 181 (218)
T KOG0088|consen 172 AKMIEHSSQR 181 (218)
T ss_pred HHHHHHhhhc
Confidence 9988877543
No 43
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.7e-33 Score=205.39 Aligned_cols=161 Identities=30% Similarity=0.529 Sum_probs=143.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
++||+++|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..+...+++.+|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999999999998888888876664 5678899999999999999999999999999999999999
Q ss_pred EeCCCHhHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEeCC
Q 028283 86 YDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEASAR 151 (211)
Q Consensus 86 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~ 151 (211)
||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+ ...++.+++.+++++.++ +|+++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 78999887765 4899999999999964 235788999999999997 79999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 028283 152 TAQN-VEEAFIKTAAKIL 168 (211)
Q Consensus 152 ~~~~-i~~~~~~i~~~i~ 168 (211)
+|++ ++++|..+.+..+
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999988544
No 44
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=5.3e-33 Score=201.72 Aligned_cols=162 Identities=33% Similarity=0.703 Sum_probs=148.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|++..+.+.+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888899999988888889999999999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcC-----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHAN-----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
|++++.++..+..|+..+..... .+.|+++++||+|+.+......++...++...+++++++|++++.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999998877653 4799999999999976566777888888888889999999999999999999
Q ss_pred HHHHHHH
Q 028283 162 KTAAKIL 168 (211)
Q Consensus 162 ~i~~~i~ 168 (211)
+|.+.++
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998775
No 45
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=5.3e-33 Score=200.91 Aligned_cols=161 Identities=40% Similarity=0.753 Sum_probs=153.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEe
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|+++||||||+++|.+..+.+.+.++.+.+.....+.+++..+.+.+||++|++.+......++..+|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 88 ITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
+++++++..+..|+..+......+.|++|++||.|+.+.+.++.++++.++..++.+++++|++++.|+.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988876799999999999988788999999999999999999999999999999999999887
Q ss_pred H
Q 028283 168 L 168 (211)
Q Consensus 168 ~ 168 (211)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 46
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.5e-33 Score=200.86 Aligned_cols=163 Identities=48% Similarity=0.887 Sum_probs=148.1
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
++.+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999999888888888888888888888988889999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~ 162 (211)
+|||++++.++..+..|+..+......+.|+++|+||+|+...++...+++..+++..+. .++++|+++|.|++++|++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999876667899999999999987777777888888888776 6899999999999999999
Q ss_pred HHHH
Q 028283 163 TAAK 166 (211)
Q Consensus 163 i~~~ 166 (211)
+.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 8865
No 47
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=2.7e-32 Score=205.55 Aligned_cols=167 Identities=51% Similarity=0.833 Sum_probs=145.2
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEE
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+...+||+|+|++|||||||+++|.+..+. .+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 457799999999999999999999988764 5567778888888888888889999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHH-HHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028283 83 LLVYDITRRETFNHLSS-WLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 83 i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
|+|||+++++++..+.. |...+.... ..+.|+++|+||+|+.....+..++...++...++.++++|++++.|++++|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF 169 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999976 544454333 2468999999999998766777788888888889999999999999999999
Q ss_pred HHHHHHHHHH
Q 028283 161 IKTAAKILQN 170 (211)
Q Consensus 161 ~~i~~~i~~~ 170 (211)
++|.+.+...
T Consensus 170 ~~l~~~~~~~ 179 (211)
T PLN03118 170 EELALKIMEV 179 (211)
T ss_pred HHHHHHHHhh
Confidence 9999888664
No 48
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=8.6e-33 Score=205.10 Aligned_cols=163 Identities=29% Similarity=0.571 Sum_probs=142.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+||+++|+.|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++++..++..+++.+|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 4589999999999999999999999998888888876654 446788999999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcC-CcEEEEeC
Q 028283 85 VYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENG-LLFLEASA 150 (211)
Q Consensus 85 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~ 150 (211)
|||++++.+++.+. .|+..+.... .+.|+++|+||.|+.+.. .+..+++..++.+.+ .+++++||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999997 5877776544 489999999999996532 356678889999888 58999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 028283 151 RTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 151 ~~~~~i~~~~~~i~~~i~~ 169 (211)
++|.|++++|+++.+.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999987743
No 49
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.2e-32 Score=202.65 Aligned_cols=162 Identities=27% Similarity=0.503 Sum_probs=143.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|..|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998889999999988888889999999999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC-----CCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-----RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
|++++.++..+..|+..+........| ++|+||+|+... .....+++.+++...+++++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999988776554567 678999999521 11224567788888899999999999999999999
Q ss_pred HHHHHHHH
Q 028283 162 KTAAKILQ 169 (211)
Q Consensus 162 ~i~~~i~~ 169 (211)
++.+.+.+
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99988864
No 50
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.8e-32 Score=202.79 Aligned_cols=165 Identities=31% Similarity=0.566 Sum_probs=140.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+|+|++|+|||||+++|.++.+...+.++.+.++... +... +..+.+.+|||||++.+...+..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999998888878777666443 4454 7778999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC----CCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHH
Q 028283 86 YDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR----RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEA 159 (211)
Q Consensus 86 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~ 159 (211)
||++++.+++++. .|+..+.... .+.|+++++||.|+... ..+..+++.+++...+. +++++|+++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999986 4777665443 58999999999998643 24567788899999888 8999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 028283 160 FIKTAAKILQNIQE 173 (211)
Q Consensus 160 ~~~i~~~i~~~~~~ 173 (211)
|+.+.+.+......
T Consensus 159 f~~l~~~~~~~~~~ 172 (187)
T cd04132 159 FDTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999988765553
No 51
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=2e-32 Score=197.71 Aligned_cols=160 Identities=61% Similarity=1.031 Sum_probs=147.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+|+|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|++++.++..+..|+..+.....++.|+++++||.|+.....+..+++..++...++.++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877766789999999999998777778888999999999999999999999999999998865
No 52
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=3.3e-32 Score=196.99 Aligned_cols=163 Identities=61% Similarity=0.983 Sum_probs=150.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999988888888888888888889998889999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|++++.+++.+..|+..+......+.|+++++||+|+....+...+++..++...+++++++|++++.|++++++.|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887766689999999999997766777788888998889999999999999999999999988
Q ss_pred HHH
Q 028283 167 ILQ 169 (211)
Q Consensus 167 i~~ 169 (211)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 53
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.9e-32 Score=198.08 Aligned_cols=160 Identities=38% Similarity=0.631 Sum_probs=141.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||++++..+.+...+.++.+ ......+.+++..+.+.+|||||++++...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 6999999999999999999999988777777755 344556778888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|++++.+++.+..|+..+..... .+.|+++++||+|+.+...+..++...+++.++.+++++||+++.|++++|++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999988876543 57999999999999776667777788888888889999999999999999999987
Q ss_pred HH
Q 028283 166 KI 167 (211)
Q Consensus 166 ~i 167 (211)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 54
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=7.9e-32 Score=196.41 Aligned_cols=162 Identities=37% Similarity=0.660 Sum_probs=143.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEe
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998999999989888888889989999999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCC--CCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028283 88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
+++++++..+..|+..+..... ...|+++|+||.|+..... ...+++..++.+.+.+++++||+++.|++++|+.|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999998765543 3578999999999965433 335567778888888999999999999999999998
Q ss_pred HHHHH
Q 028283 165 AKILQ 169 (211)
Q Consensus 165 ~~i~~ 169 (211)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88743
No 55
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=3.8e-32 Score=198.96 Aligned_cols=160 Identities=27% Similarity=0.549 Sum_probs=139.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|.+|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++++...+..+++.+|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 379999999999999999999999998888888776664 3467888889999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcC-CcEEEEeCC
Q 028283 86 YDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEASAR 151 (211)
Q Consensus 86 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~ 151 (211)
||++++.+++.+. .|+..+.... .+.|+++|+||+|+... +.+..++++++++..+ ..++++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999997 5877776654 47999999999998543 4566778888888877 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028283 152 TAQNVEEAFIKTAAKI 167 (211)
Q Consensus 152 ~~~~i~~~~~~i~~~i 167 (211)
+|.|++++|+.++...
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988753
No 56
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=5.1e-32 Score=196.26 Aligned_cols=160 Identities=39% Similarity=0.642 Sum_probs=141.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|||||||+++++.+.+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|++|+||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 68999999999999999999988887777777665553 55778888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|++++.++..+..|+..+.... ..+.|+++++||+|+.+...+..++...+++..+.+++++||+++.|++++|.+|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999988886643 368999999999999876667777788888888899999999999999999999987
Q ss_pred HH
Q 028283 166 KI 167 (211)
Q Consensus 166 ~i 167 (211)
.+
T Consensus 161 ~l 162 (164)
T cd04175 161 QI 162 (164)
T ss_pred Hh
Confidence 65
No 57
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.7e-34 Score=197.34 Aligned_cols=172 Identities=41% Similarity=0.752 Sum_probs=160.3
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE---------CCEEEEEEEEeCCCcchhhhch
Q 028283 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI---------DGRPIKLQIWDTAGQESFRSIT 72 (211)
Q Consensus 2 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~D~~G~~~~~~~~ 72 (211)
+|+|.+|.+.+|++|+|||+++.++.++++.+....++|+++..+.+.+ .+..+.+++|||+|+++++++.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 5899999999999999999999999999999999999999999988766 3466889999999999999999
Q ss_pred HHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC
Q 028283 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR 151 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 151 (211)
.++++.+=+++++||+++..+|.+++.|+..++.+.- .+..+++++||+|+++.+.++.+++.+++.+.++|||++||-
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 9999999999999999999999999999999977664 466688889999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh
Q 028283 152 TAQNVEEAFIKTAAKILQNIQE 173 (211)
Q Consensus 152 ~~~~i~~~~~~i~~~i~~~~~~ 173 (211)
+|.|+++..+.++..++++.+.
T Consensus 165 tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred cCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999875
No 58
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=8.7e-32 Score=194.50 Aligned_cols=159 Identities=36% Similarity=0.623 Sum_probs=143.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC--CEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--GRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
+||+++|++|+|||||+++|+.+.+.+.+.++.+.++....+.+. +..+.+.+|||||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999888888888888877777776 778899999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028283 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
|||+++++++..+..|+..+.... .+.|+++++||.|+.....+..+++..++...+++++++|++++.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999998886544 4899999999999977777777888899999999999999999999999999887
Q ss_pred HH
Q 028283 165 AK 166 (211)
Q Consensus 165 ~~ 166 (211)
+.
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 53
No 59
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1.4e-31 Score=195.06 Aligned_cols=163 Identities=39% Similarity=0.680 Sum_probs=145.6
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEE
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
.+..+||+++|++|+|||||+++|.++.+.+.+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 35679999999999999999999999999888888888888778888899999999999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHH
Q 028283 83 LLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVE 157 (211)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~ 157 (211)
|+|||++++.++..+..|+..+..... .+.|+++++||.|+. .+....+++.+++...+. +++++||+++.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 999999999999999999887765432 468999999999996 455677888899888874 79999999999999
Q ss_pred HHHHHHHHH
Q 028283 158 EAFIKTAAK 166 (211)
Q Consensus 158 ~~~~~i~~~ 166 (211)
++|+.+++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999998864
No 60
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.1e-31 Score=194.98 Aligned_cols=160 Identities=32% Similarity=0.598 Sum_probs=141.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++++...+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888888888887777777888899999999999999888999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|+++++++..+..|+..+..... +.|+++|+||+|+.+. ... .+..+++...+.+++++||++|.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999987765 8999999999999742 333 34456777778899999999999999999999988
Q ss_pred HHH
Q 028283 167 ILQ 169 (211)
Q Consensus 167 i~~ 169 (211)
+..
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 864
No 61
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=7.7e-32 Score=203.86 Aligned_cols=165 Identities=31% Similarity=0.534 Sum_probs=146.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..+||+++|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56789999999999999999999999998888999998888887878888899999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ....++. .++...++.++++||++|.|++++|.+|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999987664 48999999999999643 3344444 6777788899999999999999999999
Q ss_pred HHHHHHHH
Q 028283 164 AAKILQNI 171 (211)
Q Consensus 164 ~~~i~~~~ 171 (211)
.+.+.+..
T Consensus 168 ~~~~~~~~ 175 (219)
T PLN03071 168 ARKLAGDP 175 (219)
T ss_pred HHHHHcCc
Confidence 99886553
No 62
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=2e-31 Score=192.63 Aligned_cols=160 Identities=32% Similarity=0.553 Sum_probs=140.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|||||||+++|....+.+...++.+.+.....+.+++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998888788777777777888888999999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|++++.++..+..|+..+.... .+.|+++++||+|+... ..++...++...+++++++|+++|.|++++|+.+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998886643 47999999999998432 1244556677778899999999999999999999988
Q ss_pred HHHH
Q 028283 167 ILQN 170 (211)
Q Consensus 167 i~~~ 170 (211)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 8764
No 63
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.6e-31 Score=193.53 Aligned_cols=161 Identities=41% Similarity=0.649 Sum_probs=140.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+|+|++|||||||+++|.+..+...+.++.+.. ....+.+++..+.+.+|||||++++...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 489999999999999999999998877777765533 3455678888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|+++++++..+..|+..+.+... .+.|+++++||+|+........+++..++...+.+++++||+++.|++++|++|++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888766543 57899999999999776667777888888888999999999999999999999987
Q ss_pred HHH
Q 028283 166 KIL 168 (211)
Q Consensus 166 ~i~ 168 (211)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 664
No 64
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=2.3e-31 Score=192.10 Aligned_cols=160 Identities=41% Similarity=0.745 Sum_probs=146.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.||+++|++|||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|+++++++..+..|+..+......+.|+++++||+|+.+......++...++...+++++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998876654579999999999997666677788888888888999999999999999999998764
No 65
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.4e-31 Score=193.64 Aligned_cols=160 Identities=34% Similarity=0.581 Sum_probs=140.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|+|||||+++++.+.+.+.+.++.+ ......+.+++..+.+.+|||||++++..++..+++.+|++|+||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 6999999999999999999999988877777654 455566778888889999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|++++.++.++..|+..+..... .+.|+++++||+|+.........+...++...+.+++++||+++.|+.++|.++.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999888876543 58999999999999766666667778888878889999999999999999999886
Q ss_pred HH
Q 028283 166 KI 167 (211)
Q Consensus 166 ~i 167 (211)
.+
T Consensus 161 ~l 162 (163)
T cd04176 161 QM 162 (163)
T ss_pred hc
Confidence 54
No 66
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.9e-31 Score=193.54 Aligned_cols=159 Identities=33% Similarity=0.508 Sum_probs=138.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++++++.+...+.++.+..+ ...+..+...+.+.+|||||++++..++..+++.+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999998777777765444 444667778889999999999999998899999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
|+++++++..+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999888766542 579999999999997766677778888888888999999999999999999998
Q ss_pred HHH
Q 028283 164 AAK 166 (211)
Q Consensus 164 ~~~ 166 (211)
+..
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 753
No 67
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=3e-31 Score=193.38 Aligned_cols=162 Identities=43% Similarity=0.808 Sum_probs=146.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh-hchHHHhccccEEEE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-SITRSYYRGAAGALL 84 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-~~~~~~~~~~d~~i~ 84 (211)
.++|+++|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.+||++|++++. ..+..+++.+|++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 5799999999999999999999998887888888888888888899999999999999999886 578889999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCC---CCCHHHHH
Q 028283 85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART---AQNVEEAF 160 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~i~~~~ 160 (211)
|||++++.++..+..|+..+.... ..+.|+++|+||+|+.....+..+++..++...+++++++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999998887654 35799999999999987777888888899998899999999999 89999999
Q ss_pred HHHHHHH
Q 028283 161 IKTAAKI 167 (211)
Q Consensus 161 ~~i~~~i 167 (211)
..+.+.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9988765
No 68
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=4.2e-31 Score=191.08 Aligned_cols=162 Identities=48% Similarity=0.858 Sum_probs=147.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++++...+..+++.+|++|+|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998887788888888888888999999999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028283 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
+|++++.++.....|+..+......+.|+++++||+|+........++...++...+++++++|+++|.|+.++|++|.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999987776668999999999999766667778888889888999999999999999999999988
Q ss_pred HH
Q 028283 166 KI 167 (211)
Q Consensus 166 ~i 167 (211)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 69
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=3.6e-31 Score=191.55 Aligned_cols=161 Identities=36% Similarity=0.603 Sum_probs=140.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|++|+|||||++++++..+...+.++.+..+ .....+++..+.+.+|||||++++...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 58999999999999999999999888777777755444 44466888888999999999999999999999999999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028283 86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
||++++.++..+..|+..+.... ..+.|+++++||+|+.....+..++...++...+++++++||++|.|++++|++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998887653 35789999999999977666677788888888889999999999999999999998
Q ss_pred HHH
Q 028283 165 AKI 167 (211)
Q Consensus 165 ~~i 167 (211)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 70
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=3.5e-31 Score=191.02 Aligned_cols=159 Identities=38% Similarity=0.668 Sum_probs=139.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 6899999999999999999999988777777766554 455678888888999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|++++.++..+..|+..+.+... .+.|+++++||+|+.+ .....+++..++...+.+++++|+++|.|++++|++|.+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999888876643 5899999999999975 345567788888888899999999999999999999986
Q ss_pred HH
Q 028283 166 KI 167 (211)
Q Consensus 166 ~i 167 (211)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 71
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=3.3e-31 Score=193.80 Aligned_cols=158 Identities=32% Similarity=0.602 Sum_probs=137.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 6999999999999999999999998888888866444 445678888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeCCC
Q 028283 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASART 152 (211)
Q Consensus 87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 152 (211)
|+++++++..+. .|+..+.... .+.|+++|+||.|+.+. ..+..+++..++.+.+. +++++||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999996 5777776543 48999999999999542 24677888999999885 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 028283 153 AQNVEEAFIKTAAK 166 (211)
Q Consensus 153 ~~~i~~~~~~i~~~ 166 (211)
|.|++++|+.+.+.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999988763
No 72
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.9e-30 Score=188.82 Aligned_cols=167 Identities=50% Similarity=0.873 Sum_probs=148.7
Q ss_pred CC-CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccc
Q 028283 1 MS-YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGA 79 (211)
Q Consensus 1 m~-~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~ 79 (211)
|+ +.+.++|+++|++|||||||+++|..+.+.+...++.+.++....+.+++..+.+.+||+||++.+...+..++..+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 65 46789999999999999999999998888777778888888888888999889999999999999999889999999
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028283 80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159 (211)
Q Consensus 80 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 159 (211)
|++++|||+.++.++..+..|+..+......+.|+++++||.|+.+..++..+....+......+++++|+++|.|++++
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 81 NALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHH
Confidence 99999999999999999999998887766668999999999999876677767777777777788999999999999999
Q ss_pred HHHHHHHH
Q 028283 160 FIKTAAKI 167 (211)
Q Consensus 160 ~~~i~~~i 167 (211)
|+.|.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998764
No 73
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.5e-31 Score=195.65 Aligned_cols=160 Identities=34% Similarity=0.589 Sum_probs=137.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.||+++|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999988877788766654 44667888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHcC-CcEEEEeCCC
Q 028283 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENG-LLFLEASART 152 (211)
Q Consensus 87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~~ 152 (211)
|++++.+++.+. .|+..+.... .+.|+++|+||+|+.... .+..+++..++...+ ++++++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999886 5888877654 489999999999996543 245566777887776 6899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 028283 153 AQNVEEAFIKTAAKIL 168 (211)
Q Consensus 153 ~~~i~~~~~~i~~~i~ 168 (211)
|.|++++|++|.+.+.
T Consensus 159 ~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 159 NRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998886
No 74
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=1.5e-30 Score=187.78 Aligned_cols=161 Identities=40% Similarity=0.762 Sum_probs=144.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|++..+.+...++.+.......+.+.+..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887777777777777777778888889999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|+++++++..+..|+..+......+.|+++++||+|+.....+..++..+++...+..++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999998887766689999999999998766777788888888889999999999999999999999876
Q ss_pred H
Q 028283 167 I 167 (211)
Q Consensus 167 i 167 (211)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 75
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=5.5e-31 Score=196.17 Aligned_cols=167 Identities=21% Similarity=0.261 Sum_probs=139.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh--------chHHHhcc
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYRG 78 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~ 78 (211)
+||+|+|.+|||||||+++|..+.+...+.++.+.+.....+.+++..+.+.+|||||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999998888888877777666778899889999999999654321 13345789
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCcEEEEeCCCCC
Q 028283 79 AAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQ 154 (211)
Q Consensus 79 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ 154 (211)
+|++|+|||++++++++.+..|+..+.... ..+.|+++|+||+|+...+....++...++. ..+++++++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887654 3679999999999997766666666766654 468899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 028283 155 NVEEAFIKTAAKILQNIQE 173 (211)
Q Consensus 155 ~i~~~~~~i~~~i~~~~~~ 173 (211)
|++++|+.+++.++.+-+.
T Consensus 161 ~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 161 HILLLFKELLISATTRGRS 179 (198)
T ss_pred CHHHHHHHHHHHhhccCCC
Confidence 9999999999888755443
No 76
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=1.6e-30 Score=189.65 Aligned_cols=165 Identities=42% Similarity=0.740 Sum_probs=146.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|.+..+.+.+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888998899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCCCCCHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~ 161 (211)
|++++.++..+..|...+..... .+.|+++++||+|+..+.....++...+++..+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999988888877655432 379999999999997656667788888888877 7899999999999999999
Q ss_pred HHHHHHHHHH
Q 028283 162 KTAAKILQNI 171 (211)
Q Consensus 162 ~i~~~i~~~~ 171 (211)
+|.+.+.+..
T Consensus 161 ~i~~~~~~~~ 170 (172)
T cd01862 161 TIARKALEQE 170 (172)
T ss_pred HHHHHHHhcc
Confidence 9998887653
No 77
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.1e-30 Score=194.40 Aligned_cols=156 Identities=30% Similarity=0.587 Sum_probs=140.0
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCH
Q 028283 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 91 (211)
Q Consensus 12 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 91 (211)
+|.+|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888888989999888888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028283 92 ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 92 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~i~~~ 170 (211)
.++..+..|+..+.+.. .+.|+++|+||+|+.. +.+..+. ..++...++.++++||++|.|+.++|.+|.+.+...
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998765 4899999999999864 3344333 467778889999999999999999999999988765
No 78
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=2.3e-30 Score=187.46 Aligned_cols=160 Identities=31% Similarity=0.565 Sum_probs=140.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+||+++|++|||||||+++|... .+...+.++.+.++....+.++ +..+.+.+|||||++.+...+..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 5777888888888877777665 56789999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+.+..++...+...+....+.+++++|++++.|++++|+.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999998887664 479999999999997766667667777777788899999999999999999999
Q ss_pred HHHH
Q 028283 164 AAKI 167 (211)
Q Consensus 164 ~~~i 167 (211)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8764
No 79
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=3.1e-30 Score=186.26 Aligned_cols=159 Identities=52% Similarity=0.919 Sum_probs=142.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887778888888888777788888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|++++.++..+..|+..+.... ..+.|+++++||+|+.. .....++...++...+++++++|+++|.|++++++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999998887765 36899999999999973 345667888888889999999999999999999999876
Q ss_pred H
Q 028283 166 K 166 (211)
Q Consensus 166 ~ 166 (211)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 80
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1.1e-30 Score=190.23 Aligned_cols=162 Identities=22% Similarity=0.300 Sum_probs=140.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
..+||+++|.+|||||||+++|+++.+. ..+.++.+..+....+.+++..+.+.+||++|++.+...+..++..+|++|
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 5799999999999999999999999988 788888888888777888888889999999999999889999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~ 162 (211)
+|||++++.++..+..|+..+... .+.|+++|+||+|+.+.......+..++++..++ .++++||+++.|++++|+.
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~ 160 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK 160 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence 999999999999998888765432 3799999999999965444433456677777776 4799999999999999999
Q ss_pred HHHHHH
Q 028283 163 TAAKIL 168 (211)
Q Consensus 163 i~~~i~ 168 (211)
|.+.+.
T Consensus 161 l~~~~~ 166 (169)
T cd01892 161 LATAAQ 166 (169)
T ss_pred HHHHhh
Confidence 998875
No 81
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.98 E-value=4.4e-30 Score=184.23 Aligned_cols=158 Identities=59% Similarity=0.983 Sum_probs=145.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|.+..+...+.++.+.++....+..++....+.+||+||++.+...+..+++++|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888899999888888888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
|+++++++..+..|+..+......+.|+++++||+|+........++...++...+.+++++|++++.|+++++++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999988887656899999999999975566778888999998899999999999999999999875
No 82
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=1.9e-30 Score=189.72 Aligned_cols=158 Identities=33% Similarity=0.622 Sum_probs=137.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeC
Q 028283 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI 88 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 88 (211)
|+|+|++|||||||+++|..+.+...+.++....+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999998887777765554 34567888889999999999999999999999999999999999
Q ss_pred CCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeCCCCC
Q 028283 89 TRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASARTAQ 154 (211)
Q Consensus 89 ~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 154 (211)
+++++++.+. .|+..+.... ++.|+++++||+|+... ..++.+++..+++..+. .++++|++++.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 5888776654 48999999999999642 23667788889999886 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q 028283 155 NVEEAFIKTAAKIL 168 (211)
Q Consensus 155 ~i~~~~~~i~~~i~ 168 (211)
|++++|+.+.+.++
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 83
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.98 E-value=5.2e-30 Score=186.48 Aligned_cols=161 Identities=39% Similarity=0.636 Sum_probs=141.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 6899999999999999999999998777777766443 566778888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCCCCCHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
|++++.+++.+..|...+.... ..+.|+++++||.|+.+.+....++...+++..+ ++++++||+++.|++++|+++.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988886643 3589999999999998777777778888888877 7899999999999999999998
Q ss_pred HHHH
Q 028283 165 AKIL 168 (211)
Q Consensus 165 ~~i~ 168 (211)
..+.
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 7654
No 84
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.2e-30 Score=192.33 Aligned_cols=158 Identities=27% Similarity=0.452 Sum_probs=129.2
Q ss_pred eeeEEEEcCCCCCHHHHHH-HHHhCC-----CCCCCCCCeee-EEEEEE--------EEECCEEEEEEEEeCCCcchhhh
Q 028283 6 LFKYIIIGDTGVGKSCLLL-QFTDKR-----FQPVHDLTIGV-EFGARM--------VTIDGRPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~G~~~~~~ 70 (211)
.+||+++|..|||||||+. ++.+.. +.+.+.++++. +.+... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 665443 34556677652 322221 25788999999999999875 3
Q ss_pred chHHHhccccEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC-------------------CCCCC
Q 028283 71 ITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH-------------------RRAVS 130 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~ 130 (211)
....+++.+|++|+|||++++.+++++. .|+..+.... .+.|+++|+||+|+.. .+.++
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4556889999999999999999999997 5888886654 4789999999999864 35678
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028283 131 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
.++++.++++++++|+++||++|.|++++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999988763
No 85
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=2.9e-30 Score=187.22 Aligned_cols=160 Identities=39% Similarity=0.590 Sum_probs=136.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchh-hhchHHHhccccEEEEEE
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-RSITRSYYRGAAGALLVY 86 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-~~~~~~~~~~~d~~i~v~ 86 (211)
||+++|++|+|||||+++++...+...+.++.+..+ ...+.+++..+.+.+||+||++.. ......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998887766666654343 455678888899999999998853 445777899999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCC-CCHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA-QNVEEAFIKT 163 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~i~~~~~~i 163 (211)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+...+..+++..++...+.+++++|++++ .|++++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887754 357999999999999776777788888999988999999999999 5999999999
Q ss_pred HHHHH
Q 028283 164 AAKIL 168 (211)
Q Consensus 164 ~~~i~ 168 (211)
.+.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 88664
No 86
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=1.3e-29 Score=194.35 Aligned_cols=160 Identities=26% Similarity=0.464 Sum_probs=139.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|||||||+++|+.+.+...+.++.+ ++....+.+++..+.+.||||+|++.+...+..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999998877777765 555666788998999999999999999888888899999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHh---------cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCcEEEEeCCCCCCH
Q 028283 87 DITRRETFNHLSSWLEDARQH---------ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNV 156 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i 156 (211)
|++++++|+.+..|+..+... ...+.|+++++||+|+.....+..+++.+++.. .++.++++||+++.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888654 224799999999999976666777888777664 4678999999999999
Q ss_pred HHHHHHHHHHH
Q 028283 157 EEAFIKTAAKI 167 (211)
Q Consensus 157 ~~~~~~i~~~i 167 (211)
+++|++|.+..
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 87
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=5e-30 Score=184.66 Aligned_cols=153 Identities=21% Similarity=0.381 Sum_probs=129.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|+.|||||||+++++.+.+.+.+.++ +..+ ...+.+++..+.+.+||++|++. ..+++.+|++|+||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 48999999999999999999988887665544 4444 35678899889999999999974 34678899999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CCCCCCHHHHHHHHHHc-CCcEEEEeCCCCCCHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLA--HRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|++++.+|+++..|+..+..... .+.|+++|+||.|+. ..+.+..++++++++.. ++.|+++||+++.|++++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999877653 578999999999985 34667778888898876 589999999999999999999
Q ss_pred HHHH
Q 028283 163 TAAK 166 (211)
Q Consensus 163 i~~~ 166 (211)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8754
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=7.9e-30 Score=193.12 Aligned_cols=164 Identities=30% Similarity=0.402 Sum_probs=139.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhc-cccEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR-GAAGALL 84 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~-~~d~~i~ 84 (211)
+||+++|++|||||||+++|..+.+. ..+.++.+.++....+.+++....+.+||+||++ ......++. .+|++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988876 5666665557777778888889999999999998 233445566 8999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028283 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.....+..+++.+++...+++++++||+++.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988876542 579999999999997777777788888888888999999999999999999999
Q ss_pred HHHHHHHHh
Q 028283 164 AAKILQNIQ 172 (211)
Q Consensus 164 ~~~i~~~~~ 172 (211)
.+.+.....
T Consensus 159 ~~~~~~~~~ 167 (221)
T cd04148 159 VRQIRLRRD 167 (221)
T ss_pred HHHHHhhhc
Confidence 988864443
No 89
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=1.5e-29 Score=184.95 Aligned_cols=157 Identities=30% Similarity=0.572 Sum_probs=135.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||++++..+.+...+.++. .+.....+.+++..+.+.+|||||++.+...+..+++.+|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999998888777774 4455556788888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEeCCC
Q 028283 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEASART 152 (211)
Q Consensus 87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 152 (211)
|++++.+++.+. .|+..+.... .+.|+++++||.|+.. .+.+..+++..++...+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999885 6877776543 4799999999999853 345677788899998887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 028283 153 AQNVEEAFIKTAA 165 (211)
Q Consensus 153 ~~~i~~~~~~i~~ 165 (211)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988753
No 90
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=1.5e-29 Score=184.95 Aligned_cols=159 Identities=29% Similarity=0.552 Sum_probs=136.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988777777755433 445778888889999999999999999999999999999999
Q ss_pred eCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeCCC
Q 028283 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASART 152 (211)
Q Consensus 87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 152 (211)
|++++.+++.+. .|+..+... ..+.|+++++||+|+.+. ..+..+++..+++..+. +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999886 577777655 468999999999998542 25667788888888886 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028283 153 AQNVEEAFIKTAAKI 167 (211)
Q Consensus 153 ~~~i~~~~~~i~~~i 167 (211)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 91
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=4.7e-29 Score=180.33 Aligned_cols=161 Identities=40% Similarity=0.641 Sum_probs=140.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|+...+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999888777777655443 455678888899999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|++++.++..+..|+..+..... .+.|+++|+||+|+.........+...++..++++++++|++++.|++++|+.+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999888877643 58999999999999765555667778888888899999999999999999999987
Q ss_pred HHH
Q 028283 166 KIL 168 (211)
Q Consensus 166 ~i~ 168 (211)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
No 92
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=7.5e-32 Score=180.26 Aligned_cols=161 Identities=43% Similarity=0.838 Sum_probs=150.6
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeC
Q 028283 10 IIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI 88 (211)
Q Consensus 10 ~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 88 (211)
+++|++++|||.|+-++.++.+- ....+++|+++.-+.+.+++.++.+++|||+|++++++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 47899999999999999888775 46778999999999999999999999999999999999999999999999999999
Q ss_pred CCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028283 89 TRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 89 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~i~ 168 (211)
.+..+|++.+.|+..+.++....+.+.+++||+|+..++.+..++.+++++.+++||+++|+++|.|++-.|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999998888899999999999888888889999999999999999999999999999999888776
Q ss_pred HH
Q 028283 169 QN 170 (211)
Q Consensus 169 ~~ 170 (211)
+.
T Consensus 161 k~ 162 (192)
T KOG0083|consen 161 KL 162 (192)
T ss_pred Hh
Confidence 54
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=6.2e-29 Score=178.90 Aligned_cols=158 Identities=40% Similarity=0.647 Sum_probs=140.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEe
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|++|||||||+++|++..+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|++|+|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777777655 5556667778778899999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028283 88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
+++++++..+..|+..+..... .+.|+++++||+|+........+++..++...+.+++++|++++.|++++|++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888877654 689999999999998766777788888988888999999999999999999998865
No 94
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.5e-28 Score=181.84 Aligned_cols=161 Identities=32% Similarity=0.566 Sum_probs=134.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.||+|+|++|+|||||+++|..+.+.+.+.++....+ ...+.+++..+.+.+||++|++.+......++..+|++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998877766666654444 345677888889999999999988877777889999999999
Q ss_pred eCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC----------CCCCCHHHHHHHHHHcCC-cEEEEeCCCCC
Q 028283 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH----------RRAVSKEEGEQFAKENGL-LFLEASARTAQ 154 (211)
Q Consensus 87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 154 (211)
|+++++++..+. .|+..+.... .+.|+++|+||+|+.+ .+.+..++...+++..+. +++++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999987 5888887654 4799999999999854 234556778888888885 79999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 028283 155 NVEEAFIKTAAKILQ 169 (211)
Q Consensus 155 ~i~~~~~~i~~~i~~ 169 (211)
|++++|+++.+.++.
T Consensus 160 ~v~~~f~~l~~~~~~ 174 (187)
T cd04129 160 GVDDVFEAATRAALL 174 (187)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987743
No 95
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.2e-28 Score=181.83 Aligned_cols=167 Identities=23% Similarity=0.332 Sum_probs=132.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
..+||+++|++|||||||++++....+... .++.+.+.....+.. ++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 358999999999999999999998877644 556566655554444 445688999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH------cCCcEEEEeCCCCCCH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------NGLLFLEASARTAQNV 156 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~i 156 (211)
+|||++++.++.....|+..+.... ..+.|+++++||+|+.+ ....++...+... .+++++++||+++.|+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 9999999988888888887765543 25799999999999864 2344445444321 1246889999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 028283 157 EEAFIKTAAKILQNIQEG 174 (211)
Q Consensus 157 ~~~~~~i~~~i~~~~~~~ 174 (211)
++++++|.+.+.+..+..
T Consensus 159 ~~l~~~l~~~l~~~~~~~ 176 (183)
T cd04152 159 QEGLEKLYEMILKRRKML 176 (183)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999997766653
No 96
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.97 E-value=2.9e-31 Score=185.92 Aligned_cols=173 Identities=31% Similarity=0.523 Sum_probs=164.5
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccE
Q 028283 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
++|..+|++++|..++||||+++++|.+-|...+..+.++++....+.+++..+++.+||++|++++.+...+|++.+.+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 46789999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
.++||+.+|..+|+.+..|++.+....+ ++|.++|-||+|+.+...+...+.+.++++.+..++.+|++...|+..+|.
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~ 174 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFA 174 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Confidence 9999999999999999999999987775 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 028283 162 KTAAKILQNIQEGA 175 (211)
Q Consensus 162 ~i~~~i~~~~~~~~ 175 (211)
+|.+++.++..+..
T Consensus 175 YLaeK~~q~~kq~~ 188 (246)
T KOG4252|consen 175 YLAEKLTQQKKQSL 188 (246)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888733
No 97
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=4.3e-28 Score=178.26 Aligned_cols=163 Identities=36% Similarity=0.550 Sum_probs=140.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..++..+|++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999887666666654444 344677888888999999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|+++..+++.+..|+..+.... ..+.|+++++||+|+........++...++...+.+++++|++++.|+.++|+++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999988876654 357899999999999766666666777888888889999999999999999999998
Q ss_pred HHHHH
Q 028283 166 KILQN 170 (211)
Q Consensus 166 ~i~~~ 170 (211)
.+...
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 87544
No 98
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=3.8e-28 Score=177.67 Aligned_cols=159 Identities=31% Similarity=0.602 Sum_probs=133.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.||+++|++|||||||+++|....+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..++..+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 68999999999999999999999988777777665553 45678888889999999999999888888899999999999
Q ss_pred eCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeCCC
Q 028283 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASART 152 (211)
Q Consensus 87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 152 (211)
|+++++++..+. .|+..+.... .+.|+++++||.|+... ..+...+.+.++...+. .++++||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998886 4777666543 48999999999998542 22345667777777764 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028283 153 AQNVEEAFIKTAAKI 167 (211)
Q Consensus 153 ~~~i~~~~~~i~~~i 167 (211)
|.|++++|++|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998654
No 99
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=2.5e-29 Score=182.21 Aligned_cols=153 Identities=22% Similarity=0.359 Sum_probs=125.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEe
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
.|+++|++|||||||+++|.+..+...+.++.+... ..+++..+.+.+||+||++.+...+..+++.+|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999999887777777776543 3345567889999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH----HHHHHHHHHcCCcEEEEeCCC------CCCHH
Q 028283 88 ITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK----EEGEQFAKENGLLFLEASART------AQNVE 157 (211)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~------~~~i~ 157 (211)
++++.++.....|+..+.... .++|+++|+||.|+........ .++..++.+.++.++++||++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999998888888775443 5899999999999976543221 123455566678899999888 99999
Q ss_pred HHHHHHHH
Q 028283 158 EAFIKTAA 165 (211)
Q Consensus 158 ~~~~~i~~ 165 (211)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99988763
No 100
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=5.2e-28 Score=180.49 Aligned_cols=160 Identities=26% Similarity=0.412 Sum_probs=134.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEe
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|++|||||||+++|+...+...+.++.. ......+.+.+..+.+.+||+||+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988776666643 4455567788888899999999999998888899999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCC-CCCCCHHHHHHHHH-HcCCcEEEEeCCCCCCHHHHHHHHH
Q 028283 88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAH-RRAVSKEEGEQFAK-ENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
++++.+++.+..|+..+..... .+.|+++++||+|+.. ...+..++..+... ..+.+++++|+++|.|++++|++|.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888876654 5799999999999965 34455445444443 4567899999999999999999999
Q ss_pred HHHH
Q 028283 165 AKIL 168 (211)
Q Consensus 165 ~~i~ 168 (211)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8775
No 101
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=1.7e-28 Score=180.47 Aligned_cols=159 Identities=18% Similarity=0.302 Sum_probs=123.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..+||+++|..+||||||+++|..+.+. .+.++.+.+.. .+.. ..+.+.+||+||++.+..++..+++.+|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 45689999999999999999999877664 35566665543 2333 4577999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-----CcEEEEeCCCCCCHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-----LLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~ 157 (211)
+|||++++.++.....++..+... ...+.|++|++||.|++.. ...++......... +.++++||++|+|+.
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999988887776665432 2257999999999999653 33444443332221 235689999999999
Q ss_pred HHHHHHHHHHHH
Q 028283 158 EAFIKTAAKILQ 169 (211)
Q Consensus 158 ~~~~~i~~~i~~ 169 (211)
++|++|.+.+.+
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999888764
No 102
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=1.9e-28 Score=178.29 Aligned_cols=155 Identities=20% Similarity=0.345 Sum_probs=123.1
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|++|||||||+++|....+. .+.++.+.++. .+.. ..+.+.+|||||++.+...+..+++.+|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999877664 34566666553 2333 4578999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEeCCCCCCHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~ 157 (211)
+|||++++.++..+..|+..+... ...+.|+++++||+|+.+ ....+++..++.. ....++++||++|.|++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 999999999998888877666443 235789999999999864 2455666665432 23468999999999999
Q ss_pred HHHHHHHH
Q 028283 158 EAFIKTAA 165 (211)
Q Consensus 158 ~~~~~i~~ 165 (211)
++|++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999864
No 103
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=2e-27 Score=179.57 Aligned_cols=167 Identities=31% Similarity=0.547 Sum_probs=145.9
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhcccc
Q 028283 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|.....+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 45678899999999999999999999988888888899999988888888889999999999999999989999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028283 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
++|+|||+++..++..+..|+..+.... .+.|+++++||+|+.+. ....+ ...++...++.++++|++++.|+++.|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998887654 47999999999998643 23323 345677788899999999999999999
Q ss_pred HHHHHHHHHH
Q 028283 161 IKTAAKILQN 170 (211)
Q Consensus 161 ~~i~~~i~~~ 170 (211)
.+|.+.+...
T Consensus 161 ~~ia~~l~~~ 170 (215)
T PTZ00132 161 LWLARRLTND 170 (215)
T ss_pred HHHHHHHhhc
Confidence 9999888654
No 104
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=2.9e-28 Score=177.48 Aligned_cols=156 Identities=22% Similarity=0.371 Sum_probs=124.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEe
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|+++||||||+++|.+..+.. +.++.+..+. .+.. ..+.+.+||+||++.+...+..++..+|++|+|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999886543 5556555553 2333 45778999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC------CcEEEEeCCCCCCHHHHH
Q 028283 88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG------LLFLEASARTAQNVEEAF 160 (211)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~~ 160 (211)
++++.++..+..|+..+.... ..+.|+++++||.|+.+ ....+++.+++...+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999999888876543 24689999999999964 355566666654322 358899999999999999
Q ss_pred HHHHHHHHHH
Q 028283 161 IKTAAKILQN 170 (211)
Q Consensus 161 ~~i~~~i~~~ 170 (211)
++|.+.+...
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9998776543
No 105
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=1.3e-27 Score=174.01 Aligned_cols=157 Identities=34% Similarity=0.630 Sum_probs=130.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|.++.+...+.++.. .........++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999998666666644 334445677888899999999999988888888889999999999
Q ss_pred eCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCC-----------CCCHHHHHHHHHHcCC-cEEEEeCCCC
Q 028283 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR-----------AVSKEEGEQFAKENGL-LFLEASARTA 153 (211)
Q Consensus 87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~s~~~~ 153 (211)
|++++.++.... .|+..+.... .+.|+++++||+|+.... .+..++...++...+. +++++|++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999998887765 4666665544 389999999999986543 2356677788888887 8999999999
Q ss_pred CCHHHHHHHHHH
Q 028283 154 QNVEEAFIKTAA 165 (211)
Q Consensus 154 ~~i~~~~~~i~~ 165 (211)
.|++++|++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999998875
No 106
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=1.3e-28 Score=180.31 Aligned_cols=157 Identities=20% Similarity=0.320 Sum_probs=122.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..+||+++|++|||||||+++|..+.+. .+.++.+.++. .+.. ..+.+.+||+||++.+...+..+++.+|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 34689999999999999999999877664 35566665553 2333 3578999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEeCCCCCCHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~ 157 (211)
+|||++++.++.....|+..+.... ..+.|++||+||.|+.+. ...++....... ..+.++++||++|.|++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 9999999999998888887765432 257999999999999643 233333332211 23347789999999999
Q ss_pred HHHHHHHHHH
Q 028283 158 EAFIKTAAKI 167 (211)
Q Consensus 158 ~~~~~i~~~i 167 (211)
++|++|.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999987764
No 107
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=1.1e-28 Score=177.92 Aligned_cols=152 Identities=20% Similarity=0.337 Sum_probs=118.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|||||||++++..+.+. .+.++.+.... .+.. ..+.+.+||+||++++...+..+++.+|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877775 35666665543 2333 3577899999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~ 160 (211)
|++++.++.....|+..+... ...+.|+++++||.|+... ...++...... ...+.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999888877766432 2246899999999999642 22333222221 123357899999999999999
Q ss_pred HHHHH
Q 028283 161 IKTAA 165 (211)
Q Consensus 161 ~~i~~ 165 (211)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 98864
No 108
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=1.3e-27 Score=175.97 Aligned_cols=160 Identities=23% Similarity=0.342 Sum_probs=123.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+||+++|++|||||||++++..+.+.. +.++.+.++. .+.. ..+.+.+|||||++.+...+..+++.+|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999998777654 4566665543 2333 45789999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEeCCCCCCHHH
Q 028283 85 VYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~~ 158 (211)
|||+++++++.....++..+... ...+.|++|++||.|+.+. ...++....... ..+.++++||++|.|+++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 99999999998888777666432 2247899999999998642 233333222211 223567899999999999
Q ss_pred HHHHHHHHHHHHH
Q 028283 159 AFIKTAAKILQNI 171 (211)
Q Consensus 159 ~~~~i~~~i~~~~ 171 (211)
+|++|.+.+.+.+
T Consensus 169 ~~~~l~~~i~~~~ 181 (182)
T PTZ00133 169 GLDWLSANIKKSM 181 (182)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998876543
No 109
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=176.55 Aligned_cols=167 Identities=39% Similarity=0.585 Sum_probs=152.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
...||+++|.+|+|||+|..++....+...+.++.+ +.+.+.+.+++..+.+.|+||+|++.+......++...|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 357999999999999999999999999999999977 6667778899999999999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028283 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
||+++++.||+.+..+++.+.+... ...|+++|+||+|+...+.++.+++..++..++++|+++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999855443 568999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 028283 164 AAKILQNIQ 172 (211)
Q Consensus 164 ~~~i~~~~~ 172 (211)
++.+.....
T Consensus 161 ~r~~~~~~~ 169 (196)
T KOG0395|consen 161 VREIRLPRE 169 (196)
T ss_pred HHHHHhhhc
Confidence 998866333
No 110
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=2.1e-27 Score=176.69 Aligned_cols=147 Identities=22% Similarity=0.416 Sum_probs=126.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-----CEEEEEEEEeCCCcchhhhchHHHhccccE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-----GRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+||+++|..|||||||+++|..+.+...+.++++.++..+.+.++ +..+.+.||||+|++.+..++..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888898888877777664 567899999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhc-------------------CCCCeEEEEEeCCCCCCCCCCCHHH----HHHHH
Q 028283 82 ALLVYDITRRETFNHLSSWLEDARQHA-------------------NPNMSIMLVGNKCDLAHRRAVSKEE----GEQFA 138 (211)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~ 138 (211)
+|+|||++++.+++++..|+..+.... ..+.|+++|+||.|+.+.+..+.+. ...++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999986642 2478999999999997655444443 34567
Q ss_pred HHcCCcEEEEeCCCC
Q 028283 139 KENGLLFLEASARTA 153 (211)
Q Consensus 139 ~~~~~~~~~~s~~~~ 153 (211)
.+.+++.++.++++.
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 789999888887754
No 111
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=1.8e-27 Score=173.96 Aligned_cols=155 Identities=21% Similarity=0.316 Sum_probs=122.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..++|+++|++|+|||||+++|.+..+ ..+.++.+. ....+.++ .+.+.+||+||++.+...+..++..+|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~--~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGF--QIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 4568999999999999999999998754 344455453 33444555 467899999999999889999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 157 (211)
+|||++++.++.....|+..+... ...+.|+++++||+|+.+.. ..+++..+.. ..+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 999999999998888887776442 23589999999999996532 4455555543 245679999999999999
Q ss_pred HHHHHHHH
Q 028283 158 EAFIKTAA 165 (211)
Q Consensus 158 ~~~~~i~~ 165 (211)
++|+++..
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99998864
No 112
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=5e-27 Score=170.48 Aligned_cols=159 Identities=28% Similarity=0.376 Sum_probs=123.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|..+.+...+..+ .... .....+++..+.+.+|||||.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999999886553332 2222 233456677889999999999888877788889999999999
Q ss_pred eCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHHc-C-CcEEEEeCCCCCCHHHHHH
Q 028283 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKEN-G-LLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 87 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~-~-~~~~~~s~~~~~~i~~~~~ 161 (211)
|++++.++..+. .|+..+.... .+.|+++|+||+|+.+..... .++...+.... + .+++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999985 5767676554 489999999999997644321 22233333333 2 3799999999999999999
Q ss_pred HHHHHHH
Q 028283 162 KTAAKIL 168 (211)
Q Consensus 162 ~i~~~i~ 168 (211)
.+.+.+.
T Consensus 158 ~~~~~~~ 164 (166)
T cd01893 158 YAQKAVL 164 (166)
T ss_pred HHHHHhc
Confidence 9888765
No 113
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=6.8e-27 Score=168.80 Aligned_cols=152 Identities=19% Similarity=0.307 Sum_probs=116.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+|+++|++|||||||+++|.+... ...+.++.+.... .+. ...+.+.+|||||++.+...+..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 4455666664432 222 34567899999999999999999999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEE 158 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~ 158 (211)
|++++.++.....|+..+.... ..+.|+++++||+|+.... ..++...... .....++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999998888888877765432 2579999999999996532 2233222221 1234589999999999999
Q ss_pred HHHHHHH
Q 028283 159 AFIKTAA 165 (211)
Q Consensus 159 ~~~~i~~ 165 (211)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9998854
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=1.1e-26 Score=169.87 Aligned_cols=154 Identities=26% Similarity=0.344 Sum_probs=120.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|++|+|||||+++|+.+.+.. ..++.+.++. .+.++ .+.+.+||+||++.+...+..+++.+|++|+
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~ 88 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVIL 88 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999877654 4555555543 33344 4679999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEeCCCCCCHHH
Q 028283 85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~ 158 (211)
|+|+++++++.....++..+.... ..+.|+++++||+|+.+. ...++..+.. ...+++++++||++|.|+++
T Consensus 89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 999999988888777766664432 257999999999998652 2333332222 22345789999999999999
Q ss_pred HHHHHHH
Q 028283 159 AFIKTAA 165 (211)
Q Consensus 159 ~~~~i~~ 165 (211)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999864
No 115
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=3.3e-27 Score=171.60 Aligned_cols=151 Identities=22% Similarity=0.309 Sum_probs=119.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEe
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
+|+++|++|||||||+++|.+. +...+.++.+... ..+..+ .+.+.+||+||++.+...+..+++.+|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 5556667766543 334443 4678999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHH------HHHHHHcC--CcEEEEeCCCC-----
Q 028283 88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEG------EQFAKENG--LLFLEASARTA----- 153 (211)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~------~~~~~~~~--~~~~~~s~~~~----- 153 (211)
++++.++..+..|+..+..... .+.|+++|+||.|++.... ..+. ..++.+.+ +.++.+||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999999999888765432 5899999999999965432 2222 22332222 45788999998
Q ss_pred -CCHHHHHHHHHH
Q 028283 154 -QNVEEAFIKTAA 165 (211)
Q Consensus 154 -~~i~~~~~~i~~ 165 (211)
.|+++.|+||.+
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999975
No 116
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=3e-26 Score=169.86 Aligned_cols=157 Identities=27% Similarity=0.356 Sum_probs=124.6
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEE
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+....+|+++|++|||||||+++|.+..+. .+.++.+... ..+.+++ ..+.+||+||++.+...+..+++.+|++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 346789999999999999999999987764 3444544433 3445554 5688999999999988899999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH----------------cCCcE
Q 028283 83 LLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE----------------NGLLF 145 (211)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~ 145 (211)
|+|+|++++.++.....|+..+..... .+.|+++++||+|+.. ....++.+..... ....+
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence 999999999888888888777765432 5799999999999864 4455666665542 22458
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 028283 146 LEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 146 ~~~s~~~~~~i~~~~~~i~~~ 166 (211)
+++||++++|++++|++|.+.
T Consensus 169 ~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 169 FMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEeEecCCCChHHHHHHHHhh
Confidence 999999999999999999875
No 117
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=1.8e-27 Score=172.54 Aligned_cols=166 Identities=34% Similarity=0.608 Sum_probs=147.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhchHHHhccccEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
...+|++|||+.++|||+|+-.+..+.+...+.|++. +.+...+.++ +..+.+.+|||+|++.|..+++..++.+|.+
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3578999999999999999999999999999999988 5666668885 9999999999999999999998999999999
Q ss_pred EEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEE
Q 028283 83 LLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEA 148 (211)
Q Consensus 83 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 148 (211)
+++|++.++.++.++. .|+.++..+. ++.|+|+|++|.||.+. ..++.+++...+++.|+ .|+++
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 9999999999999976 6888887776 69999999999999742 35777889999999995 69999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHH
Q 028283 149 SARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 149 s~~~~~~i~~~~~~i~~~i~~~~ 171 (211)
|++++.|++++|+..+...+...
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhccc
Confidence 99999999999999888776543
No 118
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=9.4e-26 Score=164.90 Aligned_cols=141 Identities=42% Similarity=0.692 Sum_probs=127.6
Q ss_pred CCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhc
Q 028283 29 KRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA 108 (211)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 108 (211)
+.+.+.+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|++|+|||++++.+++.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35677888999999988888999999999999999999999999999999999999999999999999999999887665
Q ss_pred CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Q 028283 109 NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 109 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~i~~ 169 (211)
..+.|+++|+||+|+.+.+.+..+++..++...+..++++||++|.|++++|++|.+.+.+
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5679999999999997766778888888888888899999999999999999999988754
No 119
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=1e-25 Score=175.68 Aligned_cols=140 Identities=24% Similarity=0.497 Sum_probs=122.3
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC-------------EEEEEEEEeCCCcchhhh
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-------------RPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~D~~G~~~~~~ 70 (211)
...+||+|+|..|||||||+++|.++.+...+.++++.++..+.+.+++ ..+.+.||||+|++.+..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 3678999999999999999999999999888889999988877777653 468899999999999999
Q ss_pred chHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC------------CCCeEEEEEeCCCCCCCC---C---CCHH
Q 028283 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN------------PNMSIMLVGNKCDLAHRR---A---VSKE 132 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~D~~~~~---~---~~~~ 132 (211)
++..+++.+|++|+|||++++.++.++..|+..+..... .++|++||+||+|+...+ . ...+
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e 178 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD 178 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence 999999999999999999999999999999999987631 258999999999996542 2 3578
Q ss_pred HHHHHHHHcCC
Q 028283 133 EGEQFAKENGL 143 (211)
Q Consensus 133 ~~~~~~~~~~~ 143 (211)
++++++.++++
T Consensus 179 ~a~~~A~~~g~ 189 (334)
T PLN00023 179 AARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHcCC
Confidence 89999999875
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=1.6e-26 Score=166.68 Aligned_cols=152 Identities=24% Similarity=0.408 Sum_probs=117.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEe
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
+|+++|++|||||||+++|.+..+... .++.+.+. ..+... ....+.+||+||++.+...+..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999998887543 45545443 333333 35689999999999999889999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH------HHcCCcEEEEeCCCCCCHHHHH
Q 028283 88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA------KENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
++++.++.....|+..+.... ..+.|+++++||+|+... ...++..... ...+++++++||++|+|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999988888888877765432 258999999999999642 2233333221 1234568999999999999999
Q ss_pred HHHHH
Q 028283 161 IKTAA 165 (211)
Q Consensus 161 ~~i~~ 165 (211)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 98864
No 121
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=3.3e-26 Score=167.43 Aligned_cols=159 Identities=29% Similarity=0.444 Sum_probs=124.8
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccE
Q 028283 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.+...++|+++|+.||||||++++|....... ..|+.|.. ...+.+++ ..+.+||.+|+..++..|..+++.+|+
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~ 84 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADG 84 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred ccCcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc--EEEEEEeccccccccccceeeccccce
Confidence 35788999999999999999999998765433 33444443 34455554 568999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH------cCCcEEEEeCCCCC
Q 028283 82 ALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------NGLLFLEASARTAQ 154 (211)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~ 154 (211)
+|||+|+++++.+......+..+.... ..+.|++|++||.|+++ .+..++....... ..+.++.+|+.+|+
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~ 162 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE 162 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence 999999999888877777666654432 36899999999999865 3455666554432 33458999999999
Q ss_pred CHHHHHHHHHHHH
Q 028283 155 NVEEAFIKTAAKI 167 (211)
Q Consensus 155 ~i~~~~~~i~~~i 167 (211)
|+.+.++||.+.+
T Consensus 163 Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 163 GVDEGLEWLIEQI 175 (175)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC
Confidence 9999999998764
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=3.3e-26 Score=166.15 Aligned_cols=152 Identities=27% Similarity=0.390 Sum_probs=116.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCC------CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccE
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQ------PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+|+++|++|+|||||+++|.+.... ..+.++.+... ..+.++ ...+.+|||||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 5899999999999999999864321 12233433333 334444 4678999999999999999999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-------cCCcEEEEeCCCC
Q 028283 82 ALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-------NGLLFLEASARTA 153 (211)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~ 153 (211)
+++|+|++++.++.....|+..+.+.. ..+.|+++++||+|+... ...++...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999888888888877765533 358999999999998653 334444444332 2457999999999
Q ss_pred CCHHHHHHHHHH
Q 028283 154 QNVEEAFIKTAA 165 (211)
Q Consensus 154 ~~i~~~~~~i~~ 165 (211)
.|+++++++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999998864
No 123
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=3.2e-26 Score=164.80 Aligned_cols=151 Identities=22% Similarity=0.328 Sum_probs=118.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEe
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|++|||||||++++++... ....++.+.+. ..+.++ ...+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998873 33444445443 333444 4678999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHHHHH
Q 028283 88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
++++.++.....|+..+.... ..+.|+++++||+|+.... ..++...... ....+++++|+++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999998888887765533 3589999999999986533 2334433332 2345799999999999999999
Q ss_pred HHHH
Q 028283 162 KTAA 165 (211)
Q Consensus 162 ~i~~ 165 (211)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 8864
No 124
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=5.9e-26 Score=163.48 Aligned_cols=151 Identities=23% Similarity=0.326 Sum_probs=113.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEe
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|++++|||||+++|..+.+.. ..++.+.+.. .+.. ....+.+|||||++.+...+..+++.+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776643 3445444432 2333 35678999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHHHHH
Q 028283 88 ITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
++++.++.....++..+.. ....+.|+++++||+|+.+.. ...+...... ..+.+++++|++++.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9998877766665554432 223579999999999986432 2233222211 1234699999999999999999
Q ss_pred HHHH
Q 028283 162 KTAA 165 (211)
Q Consensus 162 ~i~~ 165 (211)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9865
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=1.6e-25 Score=165.13 Aligned_cols=157 Identities=20% Similarity=0.269 Sum_probs=121.3
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEE
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+...++|+++|.+|||||||+++|.+..+.. +.++.+.+. ..+.++ .+.+.+||+||+..+...+..++..+|++
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~i 88 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGI 88 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 3567999999999999999999999876643 233433332 233344 36789999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH------------cCCcEEEEe
Q 028283 83 LLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------------NGLLFLEAS 149 (211)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s 149 (211)
|+|+|++++.++.....++..+.... ..+.|+++++||.|++. .++.+++...... ....++++|
T Consensus 89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S 166 (184)
T smart00178 89 VYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS 166 (184)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence 99999999988888887777665432 25799999999999854 3455555544321 123489999
Q ss_pred CCCCCCHHHHHHHHHHH
Q 028283 150 ARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~~~ 166 (211)
++++.|+++++++|...
T Consensus 167 a~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 167 VVRRMGYGEGFKWLSQY 183 (184)
T ss_pred cccCCChHHHHHHHHhh
Confidence 99999999999999764
No 126
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.94 E-value=2.6e-25 Score=153.80 Aligned_cols=160 Identities=22% Similarity=0.354 Sum_probs=127.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..++|+++|..|+||||++++|.+.. .....|+.+.+ +++..++ .+++++||.+|+...+..|..||..+|++|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~--Iktl~~~--~~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQ--IKTLEYK--GYTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCcccee--eEEEEec--ceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 568999999999999999999999877 33344444444 4444444 467899999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCCCCCCHHH------HHHHHHHcCCcEEEEeCCCCCCH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVSKEE------GEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
+|+|.+|+..++.....+..+.. ....+.|++|++||.|++. .++.++ .+.+++.+.++++.||+.+|+++
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 99999998888777666555433 3336899999999999963 233333 33455667889999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028283 157 EEAFIKTAAKILQN 170 (211)
Q Consensus 157 ~~~~~~i~~~i~~~ 170 (211)
.+.++||...+.++
T Consensus 167 ~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 167 LEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998774
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=4.1e-25 Score=158.43 Aligned_cols=152 Identities=22% Similarity=0.338 Sum_probs=119.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEe
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
.|+++|++|||||||+++|.+..+...+.++.+..... +..++ +.+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 37999999999999999999998888887777766543 33333 779999999999999999999999999999999
Q ss_pred CCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEeCCCCCCHHHHHH
Q 028283 88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 88 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
++++.++.....|+..+.... ..+.|+++++||+|+.+... .++..... ....++++++|++++.|++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 999888888777776664422 25789999999999865332 22222221 11335789999999999999999
Q ss_pred HHHH
Q 028283 162 KTAA 165 (211)
Q Consensus 162 ~i~~ 165 (211)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9865
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=7.4e-25 Score=160.81 Aligned_cols=154 Identities=25% Similarity=0.301 Sum_probs=113.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCC------CeeeEEEEEEEEE-----CCEEEEEEEEeCCCcchhh
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDL------TIGVEFGARMVTI-----DGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~~~~~ 69 (211)
+|+++|++++|||||+++|++.. +...+.+ ..+.+.....+.+ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 1111211 1233444333322 5677889999999999999
Q ss_pred hchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC---cEE
Q 028283 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL---LFL 146 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 146 (211)
..+..++..+|++|+|||+++..+......|.... ..++|+++++||+|+.+.. ..+...+++...++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999876655555554322 1378999999999986422 12233455555555 389
Q ss_pred EEeCCCCCCHHHHHHHHHHHH
Q 028283 147 EASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 147 ~~s~~~~~~i~~~~~~i~~~i 167 (211)
++|+++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998764
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=1.1e-24 Score=158.16 Aligned_cols=156 Identities=22% Similarity=0.184 Sum_probs=108.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh---------hchHHHhc
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR---------SITRSYYR 77 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~~ 77 (211)
.+|+++|.+|+|||||+++|.+..+.....+..+........ ....+.+.+|||||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 479999999999999999999887643322222222322222 2234678999999974210 11111223
Q ss_pred cccEEEEEEeCCCHhH--HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028283 78 GAAGALLVYDITRRET--FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
..|++|+|+|++++.+ ......|+..+.... .+.|+++++||+|+....... +...+....+.+++++||+++.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence 4689999999998654 355556777765543 379999999999996543322 24455555677899999999999
Q ss_pred HHHHHHHHHHHH
Q 028283 156 VEEAFIKTAAKI 167 (211)
Q Consensus 156 i~~~~~~i~~~i 167 (211)
++++++++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=1.3e-24 Score=158.06 Aligned_cols=157 Identities=18% Similarity=0.150 Sum_probs=111.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcch----hhhchHHH---hcccc
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSITRSY---YRGAA 80 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~~~---~~~~d 80 (211)
+|+++|.+|||||||+++|.+........+..+.......+.+++. ..+.+|||||... .......+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999976543222222222222223333332 3689999999632 11223333 34699
Q ss_pred EEEEEEeCCCH-hHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-cCCcEEEEeCCCCCCH
Q 028283 81 GALLVYDITRR-ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNV 156 (211)
Q Consensus 81 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i 156 (211)
++|+|+|++++ .++..+..|.+.+..... .+.|+++|+||+|+...... .+....+... .+.+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788888889888866542 47899999999999654433 2334445555 3678999999999999
Q ss_pred HHHHHHHHHH
Q 028283 157 EEAFIKTAAK 166 (211)
Q Consensus 157 ~~~~~~i~~~ 166 (211)
+++|++|.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 131
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=1.2e-24 Score=163.11 Aligned_cols=156 Identities=20% Similarity=0.176 Sum_probs=114.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcch---------hhhchHH
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---------FRSITRS 74 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~ 74 (211)
++.++|+|+|++|||||||++++++..+.....+..+.+.....+.+++. ..+.+|||||... +.. ...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~-~~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRS-TLE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHH-HHH
Confidence 45689999999999999999999988754433333344444444445443 2688999999732 111 112
Q ss_pred HhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCC
Q 028283 75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ 154 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 154 (211)
.+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+.... .......+.+++++|++++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence 3668999999999999888877777777776655457999999999999653321 13444556789999999999
Q ss_pred CHHHHHHHHHHH
Q 028283 155 NVEEAFIKTAAK 166 (211)
Q Consensus 155 ~i~~~~~~i~~~ 166 (211)
|+++++++|.+.
T Consensus 192 gi~~l~~~L~~~ 203 (204)
T cd01878 192 GLDELLEAIEEL 203 (204)
T ss_pred CHHHHHHHHHhh
Confidence 999999998765
No 132
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=1e-23 Score=150.76 Aligned_cols=158 Identities=33% Similarity=0.493 Sum_probs=126.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|++|+|||||+++|....+...+.++.+.+.....+..++..+.+.+||+||+..+...+..++..++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999987667777778888777777887778899999999999999899999999999999
Q ss_pred EeCCCH-hHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028283 86 YDITRR-ETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 86 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+|.... .++.... .|...+......+.|+++++||.|+.... ........+......+++++|++++.|+.+++++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 998876 5555554 56655555544488999999999996543 33333334444456679999999999999999876
Q ss_pred H
Q 028283 164 A 164 (211)
Q Consensus 164 ~ 164 (211)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 3
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=5e-24 Score=169.59 Aligned_cols=163 Identities=15% Similarity=0.082 Sum_probs=121.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcch-------hhhchHHHhcc
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-------FRSITRSYYRG 78 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-------~~~~~~~~~~~ 78 (211)
...|+++|.|+||||||+++|...+.....++.++.......+.+.+ ...+.+||+||... ....+...++.
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 46799999999999999999998764433344445555555555532 23578999999642 11223334567
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028283 79 AAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 79 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
++++|+|+|+++.++++.+..|...+..+.. .++|+++|+||+|+.+......++...++...+.+++++||++++|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 8999999999987788888899888877643 47899999999999754433334455555566788999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028283 157 EEAFIKTAAKILQ 169 (211)
Q Consensus 157 ~~~~~~i~~~i~~ 169 (211)
++++++|.+.+.+
T Consensus 317 ~eL~~~L~~~l~~ 329 (335)
T PRK12299 317 DELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887754
No 134
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=5.1e-24 Score=153.92 Aligned_cols=152 Identities=20% Similarity=0.170 Sum_probs=105.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+.|+++|++|||||||+++|.+.. +.....+..+.+.....+.+.. ...+.+|||||++.+......+++.+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999999643 2222233334444444445542 357899999999988877777889999999
Q ss_pred EEEeCCC---HhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC--CCHHHHHHHHHH---cCCcEEEEeCCCCCC
Q 028283 84 LVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKE---NGLLFLEASARTAQN 155 (211)
Q Consensus 84 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~s~~~~~~ 155 (211)
+|+|+++ +.+...+ ..+.... ..|+++++||+|+.+... ...++..+.... .+.+++++|++++.|
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~~~~~--~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EILELLG--IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHH----HHHHHhC--CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 3332222 2222221 349999999999965321 112333444444 467899999999999
Q ss_pred HHHHHHHHHH
Q 028283 156 VEEAFIKTAA 165 (211)
Q Consensus 156 i~~~~~~i~~ 165 (211)
++++++.+.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=2.2e-23 Score=152.11 Aligned_cols=155 Identities=22% Similarity=0.338 Sum_probs=115.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|++|+|||||++++.+..+.. ..++.+.+. ..+..++ ..+.+||+||+..+...+..+++.+|+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 457899999999999999999999876533 344445333 3344554 56889999999988888899999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCcEEEEeCCCCCCHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-----GLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~ 157 (211)
+|+|+.+..++.....++..+... ...+.|+++++||+|+.... ..++........ ..+++++||++|+|++
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence 999999988888777776665433 22479999999999986432 222222221111 1247899999999999
Q ss_pred HHHHHHHH
Q 028283 158 EAFIKTAA 165 (211)
Q Consensus 158 ~~~~~i~~ 165 (211)
++|++|.+
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999864
No 136
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=4.8e-23 Score=155.92 Aligned_cols=170 Identities=39% Similarity=0.548 Sum_probs=139.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|++|||||||+++|..+.+...+.++.+..+...........+.+.+|||+|++++...+..++..++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999999999988888877777766688899999999999999999999999999999
Q ss_pred EeCCC-HhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC------------CCCHHHHHHHHHHc---CCcEEEEe
Q 028283 86 YDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKEN---GLLFLEAS 149 (211)
Q Consensus 86 ~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~s 149 (211)
+|..+ ....+....|+..+......+.|+++++||+|+.... .............. ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 5566777788888887765579999999999997653 22222222222222 23389999
Q ss_pred CC--CCCCHHHHHHHHHHHHHHHHhhcc
Q 028283 150 AR--TAQNVEEAFIKTAAKILQNIQEGA 175 (211)
Q Consensus 150 ~~--~~~~i~~~~~~i~~~i~~~~~~~~ 175 (211)
++ .+.++.++|..+...+........
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEKLV 192 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence 99 999999999999999876655433
No 137
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.6e-24 Score=151.26 Aligned_cols=159 Identities=19% Similarity=0.304 Sum_probs=129.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|-.++||||++.+|..+..... .|++|.......+ . ++++.+||.+|++.++.+|..|+++.+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y--k--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY--K--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE--c--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 4578999999999999999999988876655 6666666654444 3 678999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCcEEEEeCCCCCCHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-----GLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~ 157 (211)
||+|.+|++.+...+..+..+..... .+.|+++++||.|++. .++..++.+..... ...+..++|.+|+|+.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~--als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPG--ALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccc--cCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 99999999988888777766655554 7899999999999975 34555555544433 3348889999999999
Q ss_pred HHHHHHHHHHHH
Q 028283 158 EAFIKTAAKILQ 169 (211)
Q Consensus 158 ~~~~~i~~~i~~ 169 (211)
+.++++.+.+..
T Consensus 168 egl~wl~~~~~~ 179 (181)
T KOG0070|consen 168 EGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=7.7e-24 Score=149.77 Aligned_cols=134 Identities=20% Similarity=0.199 Sum_probs=98.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc-----hhhhchHHHhccccEE
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-----SFRSITRSYYRGAAGA 82 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~-----~~~~~~~~~~~~~d~~ 82 (211)
||+++|++|+|||||+++|.+..+. +.++.+. .+.. .+|||||.. .+.... ..++++|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYND-----GAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 7999999999999999999977642 2223222 2221 589999972 233333 357899999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHH
Q 028283 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFI 161 (211)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~ 161 (211)
|+|||++++.++.. ..|...+ ..|+++++||+|+.+. ....++..+++...+. +++++|++++.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999887644 2343321 3499999999998642 3455667777777776 799999999999999998
Q ss_pred HHH
Q 028283 162 KTA 164 (211)
Q Consensus 162 ~i~ 164 (211)
+|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 139
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=8.4e-23 Score=144.72 Aligned_cols=153 Identities=49% Similarity=0.828 Sum_probs=121.8
Q ss_pred EEcCCCCCHHHHHHHHHhCCC-CCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCC
Q 028283 11 IIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 11 v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 89 (211)
|+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 44444443 6666666777777889999999999988888888999999999999999
Q ss_pred CHhHHHHHHHHH-HHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH-HHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028283 90 RRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDLAHRRAVSKEE-GEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 90 ~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
++.+......|+ .........+.|+++++||+|+.......... ..........+++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999888888773 23333344689999999999997644333222 3445555678899999999999999999875
No 140
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=3.6e-23 Score=148.60 Aligned_cols=147 Identities=20% Similarity=0.220 Sum_probs=110.5
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh------chHHHhc--cccEE
Q 028283 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS------ITRSYYR--GAAGA 82 (211)
Q Consensus 11 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~------~~~~~~~--~~d~~ 82 (211)
|+|.+|+|||||++++.+........+..+.+.....+.+++ ..+.+|||||+..+.. .+..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998875555555556666666666765 4689999999876554 3455564 89999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028283 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|+|+|+.++.... .++..+.. .++|+++++||+|+....... .....+....+.+++++|++++.|+++++++
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998864422 33333332 379999999999997654433 2345666777889999999999999999998
Q ss_pred HHHH
Q 028283 163 TAAK 166 (211)
Q Consensus 163 i~~~ 166 (211)
+.+.
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 8775
No 141
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=4.7e-23 Score=149.55 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=109.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.|+++|++|+|||||+++|....+.....+..+.+.....+..+ +....+.+|||||++.+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999888766544444444443444433 13567899999999998888888999999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH-HHHHHHHH------HcCCcEEEEeCCCCCCHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK-EEGEQFAK------ENGLLFLEASARTAQNVEEA 159 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~------~~~~~~~~~s~~~~~~i~~~ 159 (211)
|+++....... ..+..+.. .+.|+++++||+|+........ +....+.. ....+++++|++++.|+.++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 99884322211 12222222 3789999999999864321111 11111111 12357999999999999999
Q ss_pred HHHHHHHH
Q 028283 160 FIKTAAKI 167 (211)
Q Consensus 160 ~~~i~~~i 167 (211)
+++|.+..
T Consensus 158 ~~~l~~~~ 165 (168)
T cd01887 158 LEAILLLA 165 (168)
T ss_pred HHHHHHhh
Confidence 99988764
No 142
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.91 E-value=1.3e-23 Score=148.87 Aligned_cols=148 Identities=20% Similarity=0.250 Sum_probs=106.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc------hhhhchHHHh--cc
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE------SFRSITRSYY--RG 78 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------~~~~~~~~~~--~~ 78 (211)
++|+++|.|++|||||+|+|++........+.++.+.....+.+.+ ..+.++|+||.- ........++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999987666666667777777777777 457899999932 1222344444 68
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028283 79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158 (211)
Q Consensus 79 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 158 (211)
.|++|+|+|+++.+.-.. +...+.. .+.|+++++||+|......+. .+...+.+..+++++.+||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l~---l~~ql~e---~g~P~vvvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY---LTLQLLE---LGIPVVVVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH---HHHHHHH---TTSSEEEEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHHH---HHHHHHH---cCCCEEEEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 999999999987543222 2223332 389999999999986544333 236677777899999999999999999
Q ss_pred HHHHH
Q 028283 159 AFIKT 163 (211)
Q Consensus 159 ~~~~i 163 (211)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98765
No 143
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=2.6e-23 Score=154.65 Aligned_cols=149 Identities=20% Similarity=0.195 Sum_probs=106.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh--CCCCCCC------------CCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhch
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTD--KRFQPVH------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSIT 72 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~ 72 (211)
-+|+++|.+++|||||+++|+. +.+.... ..+.+.+.......++.....+.+|||||++++...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999997 4443332 1234555555555566667789999999999999999
Q ss_pred HHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC-CCHHHHHHHHH-------HcCCc
Q 028283 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAK-------ENGLL 144 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~ 144 (211)
..+++.+|++|+|||+++.. ......++..+.. .+.|+++++||+|+..... ...++...+.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2222333333322 3789999999999964322 11234444442 23678
Q ss_pred EEEEeCCCCCCHHHH
Q 028283 145 FLEASARTAQNVEEA 159 (211)
Q Consensus 145 ~~~~s~~~~~~i~~~ 159 (211)
++++|+++|.|+.+.
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999887443
No 144
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=1.4e-22 Score=161.19 Aligned_cols=160 Identities=17% Similarity=0.143 Sum_probs=116.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh----hchHHH---hcc
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR----SITRSY---YRG 78 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~----~~~~~~---~~~ 78 (211)
...|+++|.++||||||+++|.........++.++.......+.+++ ...+.+||+||..... .+...+ +..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 46799999999999999999998764333333334444444455544 3568899999974321 233333 456
Q ss_pred ccEEEEEEeCCCH---hHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Q 028283 79 AAGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA 153 (211)
Q Consensus 79 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 153 (211)
++++++|+|+++. .+++.+..|.+.+..+.. .+.|+++|+||+|+.+... ..+..+.+....+.+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999976 577788888877766532 4799999999999965432 223445556566788999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028283 154 QNVEEAFIKTAAKI 167 (211)
Q Consensus 154 ~~i~~~~~~i~~~i 167 (211)
.|+++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999988754
No 145
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=1.2e-22 Score=162.84 Aligned_cols=154 Identities=21% Similarity=0.184 Sum_probs=112.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc---------hhhhchHHH
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE---------SFRSITRSY 75 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~---------~~~~~~~~~ 75 (211)
..++|+++|.+|+|||||+|+|++........+..+.+.....+.+.+. ..+.+|||||.. .+.. ....
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~-tle~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRA-TLEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHH-HHHH
Confidence 4589999999999999999999988754444444455555666666432 368899999972 2222 2235
Q ss_pred hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028283 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
+.++|++++|+|++++.+...+..|...+......+.|+++|+||+|+..... .... .....+++.+||+++.|
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg~G 339 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTGEG 339 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCCCC
Confidence 78999999999999988877777776666665545789999999999964221 1111 12234689999999999
Q ss_pred HHHHHHHHHHH
Q 028283 156 VEEAFIKTAAK 166 (211)
Q Consensus 156 i~~~~~~i~~~ 166 (211)
+++++++|.+.
T Consensus 340 I~eL~~~I~~~ 350 (351)
T TIGR03156 340 LDLLLEAIAER 350 (351)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 146
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.90 E-value=2.1e-22 Score=137.91 Aligned_cols=173 Identities=24% Similarity=0.341 Sum_probs=143.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC--CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchh-hhchHHHhccccE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP--VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-RSITRSYYRGAAG 81 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-~~~~~~~~~~~d~ 81 (211)
...||+|+|..++|||+++..|+-+...+ ...++....+.....+-++..-++.|+||+|.... ..+...|+..+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 45799999999999999999998655433 44455454444444444666678999999997666 6688999999999
Q ss_pred EEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028283 82 ALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
+++||+..|+++|+.+..+...|....+ ..+|++|++||+|+.++.+...+-+..+++...+.++++++.+...+-+.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 9999999999999998887777776554 679999999999999988999899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccc
Q 028283 161 IKTAAKILQNIQEGALD 177 (211)
Q Consensus 161 ~~i~~~i~~~~~~~~~~ 177 (211)
.++..++...+.+....
T Consensus 168 ~~l~~rl~~pqskS~Fp 184 (198)
T KOG3883|consen 168 TYLASRLHQPQSKSTFP 184 (198)
T ss_pred HHHHHhccCCcccccCc
Confidence 99998886665554443
No 147
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=2.2e-23 Score=155.84 Aligned_cols=151 Identities=21% Similarity=0.225 Sum_probs=102.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC-----------cchhhhchH
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG-----------QESFRSITR 73 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G-----------~~~~~~~~~ 73 (211)
..++|+++|.+|+|||||+++|.+..+.....+ +.+.....+.+. .+.+||||| ++.+...+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 568999999999999999999998876544444 334444444333 478999999 455655555
Q ss_pred HHhc----cccEEEEEEeCCCHhHH----H------HHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH
Q 028283 74 SYYR----GAAGALLVYDITRRETF----N------HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 139 (211)
Q Consensus 74 ~~~~----~~d~~i~v~d~~~~~s~----~------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 139 (211)
.++. .++++++|+|..+.... . .-..++..+. ..+.|+++|+||+|+.+.. .+...++..
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~ 155 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIAE 155 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHHH
Confidence 5553 45688889988653211 0 0011122222 2389999999999986433 234455555
Q ss_pred HcCC---------cEEEEeCCCCCCHHHHHHHHHHHHH
Q 028283 140 ENGL---------LFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 140 ~~~~---------~~~~~s~~~~~~i~~~~~~i~~~i~ 168 (211)
..+. +++++||++| |+++++++|.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 5554 5899999999 99999999988764
No 148
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=1.6e-22 Score=157.61 Aligned_cols=153 Identities=19% Similarity=0.138 Sum_probs=104.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh--------hchHHHhccc
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--------SITRSYYRGA 79 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~~~~~~~ 79 (211)
+|+++|.+|||||||+|+|++......+..+.++......+...+ ..++.+|||||..... .....++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 689999999999999999999876543332212222222332332 2468999999964321 1234567899
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHH
Q 028283 80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEE 158 (211)
Q Consensus 80 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~ 158 (211)
|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.+... ..+....+....+. +++++||++|.|+++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 9999999999865543 333344433 3789999999999964222 12334444444444 799999999999999
Q ss_pred HHHHHHHHH
Q 028283 159 AFIKTAAKI 167 (211)
Q Consensus 159 ~~~~i~~~i 167 (211)
++++|.+.+
T Consensus 155 L~~~l~~~l 163 (270)
T TIGR00436 155 LAAFIEVHL 163 (270)
T ss_pred HHHHHHHhC
Confidence 999888765
No 149
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.90 E-value=1.7e-22 Score=138.61 Aligned_cols=114 Identities=36% Similarity=0.669 Sum_probs=89.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQ--PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
||+|+|+.|||||||+++|++.... .......+.++......+......+.+||++|++.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 22333335555555677788777799999999998888888889999999999
Q ss_pred EeCCCHhHHHHHHHH---HHHHHHhcCCCCeEEEEEeCCC
Q 028283 86 YDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCD 122 (211)
Q Consensus 86 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D 122 (211)
||++++.++..+..+ +..+.... .+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 999999999887655 44444332 4699999999998
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.89 E-value=1.9e-22 Score=147.36 Aligned_cols=155 Identities=21% Similarity=0.202 Sum_probs=106.7
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchh----hh---chHHHhccccEEE
Q 028283 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----RS---ITRSYYRGAAGAL 83 (211)
Q Consensus 11 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~~---~~~~~~~~~d~~i 83 (211)
++|++|||||||+|+|.+........+..+.+.....+.+++ ...+.+|||||.... .. .....+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998865222222223333333344441 345789999996321 11 2234577899999
Q ss_pred EEEeCCCH------hHHHHHHHHHHHHHHhcC-------CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeC
Q 028283 84 LVYDITRR------ETFNHLSSWLEDARQHAN-------PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA 150 (211)
Q Consensus 84 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 150 (211)
+|+|+.++ .++.....|...+..... .+.|+++++||+|+..................+..++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999987 467777777776654432 37999999999999654433222223344445677999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028283 151 RTAQNVEEAFIKTAAK 166 (211)
Q Consensus 151 ~~~~~i~~~~~~i~~~ 166 (211)
+++.|++++++++...
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999988654
No 151
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=5.5e-22 Score=158.80 Aligned_cols=155 Identities=22% Similarity=0.295 Sum_probs=106.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCcch-hhhc-------hHH
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSI-------TRS 74 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~-~~~~-------~~~ 74 (211)
.+.++|+++|.+|||||||+|+|++..+..... +.++.......+..++ .++.||||||... +..+ ...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 456799999999999999999999887753222 1222233333445555 4679999999743 2221 223
Q ss_pred HhccccEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CcEEEEeCC
Q 028283 75 YYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASAR 151 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~ 151 (211)
.+..+|++++|+|..+. +.... .|+..+... +.|.++|+||+|+... ...+..+++.... ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 47799999999998663 33333 344444332 5677889999998642 2345555555543 579999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 028283 152 TAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 152 ~~~~i~~~~~~i~~~i~ 168 (211)
+|.|+++++++|.+.+.
T Consensus 200 tg~gv~eL~~~L~~~l~ 216 (339)
T PRK15494 200 SGKNIDGLLEYITSKAK 216 (339)
T ss_pred CccCHHHHHHHHHHhCC
Confidence 99999999999887654
No 152
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=1e-21 Score=145.06 Aligned_cols=156 Identities=22% Similarity=0.189 Sum_probs=109.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe--------------eeEEEEEEEEECCEEEEEEEEeCCCcchhhhchH
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI--------------GVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR 73 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 73 (211)
+|+|+|.+|+|||||+++|++........... +.+.......++.....+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999887655432211 1222222222232346789999999998888899
Q ss_pred HHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHH-----------
Q 028283 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKE----------- 140 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~----------- 140 (211)
.+++.+|++++|+|+.++..... ..++..+.. .+.|+++++||+|+..+.... .+...+....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 99999999999999987654332 233333332 489999999999997532211 2223333332
Q ss_pred ---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 141 ---NGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 141 ---~~~~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
...+++++|++++.|+++++++|.+.+
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 346799999999999999999988775
No 153
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.89 E-value=8.5e-22 Score=141.09 Aligned_cols=146 Identities=23% Similarity=0.234 Sum_probs=105.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh--------chHHHhc
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYR 77 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~ 77 (211)
++|+++|++|+|||||++++++..... ...+..+.........+++ ..+.+|||||...... .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876422 2223334444344444443 4678999999754432 2334677
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028283 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 157 (211)
.+|++++|+|++++.+......+.. ..+.|+++++||+|+.+.... .......+++++|++++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 9999999999998776655544332 248999999999999754432 334456789999999999999
Q ss_pred HHHHHHHHHH
Q 028283 158 EAFIKTAAKI 167 (211)
Q Consensus 158 ~~~~~i~~~i 167 (211)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987654
No 154
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.89 E-value=1.8e-22 Score=137.40 Aligned_cols=158 Identities=20% Similarity=0.279 Sum_probs=125.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+.+.++|-.++|||||+|....+.+.+...|++|... ..+....+.+.+||.||+.++++.|..|++.+++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 357899999999999999999998888888888888766 4455567889999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHH-HhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEeCCCCCCHHH
Q 028283 85 VYDITRRETFNHLSSWLEDAR-QHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~~ 158 (211)
|+|+.|++.+..-+..+..+. +..-.++|++|++||.|++. .++....-..... ..+-+|.+|+++..|++-
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHHHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 999999888776665554443 33347999999999999965 2333322222111 233489999999999999
Q ss_pred HHHHHHHHHH
Q 028283 159 AFIKTAAKIL 168 (211)
Q Consensus 159 ~~~~i~~~i~ 168 (211)
+.+||++.-.
T Consensus 173 ~~~Wli~hsk 182 (186)
T KOG0075|consen 173 TLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHhh
Confidence 9999987643
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=2e-21 Score=160.02 Aligned_cols=154 Identities=21% Similarity=0.176 Sum_probs=115.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhc--------hHHH
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI--------TRSY 75 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~ 75 (211)
..++|+++|++|+|||||+|+|++.... ....+.++.+.....+.+++.. +.+|||||....... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4689999999999999999999987532 2333444666666667777654 689999998654332 2457
Q ss_pred hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028283 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
++.+|++++|||++++.++... |+..+.. .+.|+++|+||+|+... +...++...+.+++.+|+++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 8899999999999988776554 5554432 37899999999999543 12344556677899999998 59
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028283 156 VEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 156 i~~~~~~i~~~i~~~~~ 172 (211)
++++|+.|.+.+.+...
T Consensus 348 I~~~~~~L~~~i~~~~~ 364 (442)
T TIGR00450 348 IKALVDLLTQKINAFYS 364 (442)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999998876653
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=8.1e-22 Score=164.58 Aligned_cols=154 Identities=21% Similarity=0.196 Sum_probs=107.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcch--------hhhchHHH
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSY 75 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~ 75 (211)
..++|+|+|.+|||||||+|+|++..... ...+.++.+.....+.+++. .+.+|||||.+. +...+..+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 34789999999999999999999876432 33333344444444555554 478999999762 33456667
Q ss_pred hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCC
Q 028283 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQ 154 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 154 (211)
++.+|++|+|||+++..+... ..+...+.. .+.|+++|+||+|+.... .+....+ ..++ .++++||++|.
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR 185 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence 899999999999998655432 233333332 379999999999985421 1222222 2233 35799999999
Q ss_pred CHHHHHHHHHHHHHH
Q 028283 155 NVEEAFIKTAAKILQ 169 (211)
Q Consensus 155 ~i~~~~~~i~~~i~~ 169 (211)
|++++|++|.+.+..
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999988754
No 157
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=1.1e-21 Score=141.12 Aligned_cols=143 Identities=17% Similarity=0.182 Sum_probs=100.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc----hhhhchHHHhccccEEE
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----SFRSITRSYYRGAAGAL 83 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----~~~~~~~~~~~~~d~~i 83 (211)
+|+++|.+|+|||||+|+|.+... ....+.+ +.+... .+|||||.. ++.......+..+|++|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cCccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999886531 1112211 222222 269999962 22222234478999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--cEEEEeCCCCCCHHHHHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL--LFLEASARTAQNVEEAFI 161 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|+++..++ +..|+..+ ..+.|+++++||+|+.. ...+...+++.+.++ +++++|++++.|++++|+
T Consensus 70 ~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 99999987654 22343332 13679999999999854 234566677777765 899999999999999999
Q ss_pred HHHHHHHHHHh
Q 028283 162 KTAAKILQNIQ 172 (211)
Q Consensus 162 ~i~~~i~~~~~ 172 (211)
++.+.+.+...
T Consensus 141 ~l~~~~~~~~~ 151 (158)
T PRK15467 141 YLASLTKQEEA 151 (158)
T ss_pred HHHHhchhhhc
Confidence 99887755543
No 158
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.1e-21 Score=131.20 Aligned_cols=156 Identities=19% Similarity=0.341 Sum_probs=123.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
+.++|+.+|-.++||||++.+|+.+. +....+++|......+ .+++.+++||.+|++..+.+|..|++...++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVt----ykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEE----eeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 56899999999999999999998765 3445566666554333 356789999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCcEEEEeCCCCCCHHH
Q 028283 85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-----GLLFLEASARTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~ 158 (211)
|+|..+.+..+..+..+..+.... ....|++|.+||.|+++ .++.+++..+.... ...+.++++.+|+++.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~--A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPD--AMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccc--ccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 999999877666665544443322 25899999999999976 45667777765543 33478999999999999
Q ss_pred HHHHHHHHH
Q 028283 159 AFIKTAAKI 167 (211)
Q Consensus 159 ~~~~i~~~i 167 (211)
-|.+|.+.+
T Consensus 169 glswlsnn~ 177 (180)
T KOG0071|consen 169 GLSWLSNNL 177 (180)
T ss_pred HHHHHHhhc
Confidence 999998764
No 159
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=1.9e-21 Score=165.38 Aligned_cols=156 Identities=23% Similarity=0.274 Sum_probs=115.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCC------CeeeEEEEEEEEE-----CCEEEEEEEEeCCCcch
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDL------TIGVEFGARMVTI-----DGRPIKLQIWDTAGQES 67 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~~~ 67 (211)
.-+|+++|+.++|||||+++|+... +...+.. ..|.++....+.+ ++..+.+.||||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998652 1222221 2255555444333 46668999999999999
Q ss_pred hhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC---c
Q 028283 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL---L 144 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 144 (211)
+...+..++..+|++|+|+|+++..+.+....|+..+. .+.|+++++||+|+.+.. ..+...++....++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999998766666656554432 378999999999986422 12223444444555 3
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Q 028283 145 FLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 145 ~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
++++||++|.|++++|++|.+.+
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC
Confidence 89999999999999999988766
No 160
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=9.4e-22 Score=146.04 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=101.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC----CCCC---CCCCeeeEEEEEEEEEC------------CEEEEEEEEeCCCcch
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKR----FQPV---HDLTIGVEFGARMVTID------------GRPIKLQIWDTAGQES 67 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~----~~~~---~~~~~~~~~~~~~~~~~------------~~~~~~~l~D~~G~~~ 67 (211)
++|+++|++++|||||+++|+... +... ..+..+.........+. +....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999999631 1111 11112222222222222 3356889999999976
Q ss_pred hhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHH------
Q 028283 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAK------ 139 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~------ 139 (211)
+........+.+|++++|+|+.+.........+. +... .+.|+++++||+|+...... ..++..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5554445567789999999998754333222221 1121 26799999999998642211 1222222211
Q ss_pred -HcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028283 140 -ENGLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 140 -~~~~~~~~~s~~~~~~i~~~~~~i~~~i~ 168 (211)
..+++++++|++++.|+++++++|...+.
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 13568999999999999999998887663
No 161
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=1.9e-21 Score=159.32 Aligned_cols=158 Identities=18% Similarity=0.134 Sum_probs=113.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchh--hhch------HHHhcc
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF--RSIT------RSYYRG 78 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--~~~~------~~~~~~ 78 (211)
++|+++|.+|||||||+|+|++........+..+.+.....+.+.+. ..+.+|||||..+. ...+ ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 68999999999999999999987655434444455555555666543 25679999997432 2222 234688
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCCCCHH
Q 028283 79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVE 157 (211)
Q Consensus 79 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~ 157 (211)
+|++|+|+|++++.+...+..|...+......+.|+++|+||+|+..... .... ....+.+ ++.+||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence 99999999999988877776665655555445799999999999864211 1111 1123444 5889999999999
Q ss_pred HHHHHHHHHHHHH
Q 028283 158 EAFIKTAAKILQN 170 (211)
Q Consensus 158 ~~~~~i~~~i~~~ 170 (211)
+++++|.+.+...
T Consensus 352 eL~e~I~~~l~~~ 364 (426)
T PRK11058 352 LLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999888554
No 162
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=9.8e-22 Score=140.85 Aligned_cols=146 Identities=19% Similarity=0.109 Sum_probs=100.0
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh--------chHHHhcccc
Q 028283 10 IIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYRGAA 80 (211)
Q Consensus 10 ~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~~~d 80 (211)
+++|.+|+|||||+++|++.... ....+..+.+........++ ..+.+|||||...... .+...++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999987532 11222223333333344444 5688999999876443 3455678999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHH
Q 028283 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEA 159 (211)
Q Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~ 159 (211)
++++|+|..++.+.... .+...+.. .+.|+++++||+|+.+.... .......+. .++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999875443322 22222322 36999999999999653221 223334555 6899999999999999
Q ss_pred HHHHHHH
Q 028283 160 FIKTAAK 166 (211)
Q Consensus 160 ~~~i~~~ 166 (211)
+++|.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9998865
No 163
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=9.7e-21 Score=154.46 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=114.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcch----hhhchHHH---hccc
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSITRSY---YRGA 79 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----~~~~~~~~---~~~~ 79 (211)
..|+++|.++||||||+++|++.+......+.++.......+.+++ ...+.+||+||... ...+...+ +..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 4799999999999999999998764333333334444333344431 34688999999643 11233334 4558
Q ss_pred cEEEEEEeCCCH---hHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCC
Q 028283 80 AGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ 154 (211)
Q Consensus 80 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 154 (211)
+++|+|+|+++. +.+.....|.+.+..+.. .++|++||+||+|+... .+....+....+.+++++||+++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999864 566777778777776543 47999999999998431 244556666666789999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 028283 155 NVEEAFIKTAAKILQN 170 (211)
Q Consensus 155 ~i~~~~~~i~~~i~~~ 170 (211)
|+++++++|.+.+...
T Consensus 314 GI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 314 GLDELLYAVAELLEET 329 (424)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999998877554
No 164
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=8e-21 Score=160.94 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=111.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|+.++|||||+++|.+..+.....+..+.+.....+.+++.. .+.||||||++.+..++...+..+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 56899999999999999999999887766555544555555555554332 68899999999999999889999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-------C--CcEEEEeCCCCCC
Q 028283 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-------G--LLFLEASARTAQN 155 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~s~~~~~~ 155 (211)
|+|+++....+.... +. .....++|+++++||+|+... ..+.....+... + .+++++||++|.|
T Consensus 165 VVda~dgv~~qT~e~-i~---~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 165 VVAADDGVMPQTIEA-IS---HAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEECCCCCCHhHHHH-HH---HHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 999987432222211 12 222248999999999998642 223333333222 2 4699999999999
Q ss_pred HHHHHHHHHH
Q 028283 156 VEEAFIKTAA 165 (211)
Q Consensus 156 i~~~~~~i~~ 165 (211)
+++++++|..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999998863
No 165
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=2.6e-21 Score=160.13 Aligned_cols=149 Identities=24% Similarity=0.225 Sum_probs=111.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhc--------hHHH
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI--------TRSY 75 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~--------~~~~ 75 (211)
..++|+++|.+|+|||||+|+|++.... ....+..+.+.....+.+++. .+.+|||||....... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3479999999999999999999987642 233344455555566667664 4789999998654321 3346
Q ss_pred hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028283 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
+..+|++++|+|++++.++.....|.. ..+.|+++|+||+|+....... ...+.+++++|+++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 889999999999999877665444432 3478999999999996532211 33456799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028283 156 VEEAFIKTAAKILQ 169 (211)
Q Consensus 156 i~~~~~~i~~~i~~ 169 (211)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 166
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=3.5e-21 Score=160.74 Aligned_cols=158 Identities=19% Similarity=0.187 Sum_probs=110.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc----------hhhhc-h
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----------SFRSI-T 72 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~-~ 72 (211)
..++|+++|.+|+|||||+|+|++.... ....+.++.+.....+.+++.. +.+|||||.. .+... .
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999988653 2333444555555556677655 5799999952 22222 2
Q ss_pred HHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHHHHH-HHHHcCCcEEEEe
Q 028283 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQ-FAKENGLLFLEAS 149 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~s 149 (211)
..+++.+|++|+|+|++++.++..+. ++..+.. .+.|+++|+||+|+.+.... ...+... +.....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 34578999999999999987776664 3333332 48999999999999642211 0111211 2222346899999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 028283 150 ARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~~~i~ 168 (211)
|++|.|++++|+.+.+.+.
T Consensus 364 Ak~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 364 AKTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987663
No 167
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=8e-21 Score=141.34 Aligned_cols=158 Identities=19% Similarity=0.173 Sum_probs=105.7
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc----------chhhhch
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----------ESFRSIT 72 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~ 72 (211)
.+..++|+++|++|+|||||+++|++..+.....++.+.+........ ...+.+|||||. +.+....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 356789999999999999999999987654444445455544443333 257899999994 3333444
Q ss_pred HHHhccc---cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHHHcCCcEEE
Q 028283 73 RSYYRGA---AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKENGLLFLE 147 (211)
Q Consensus 73 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~ 147 (211)
..++... +++++|+|..++.+.... .+...+.. .+.|+++++||+|+....+.. .+++.........++++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 173 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL 173 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence 5555544 578888998775433221 11122221 378999999999986432211 12233444444678999
Q ss_pred EeCCCCCCHHHHHHHHHHHH
Q 028283 148 ASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 148 ~s~~~~~~i~~~~~~i~~~i 167 (211)
+|++++.|++++++.|.+.+
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 99999999999999887665
No 168
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=5e-21 Score=140.61 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=99.1
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc----------hhhhc
Q 028283 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----------SFRSI 71 (211)
Q Consensus 2 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~----------~~~~~ 71 (211)
+....++|+++|++|+|||||+|+|++..+.....++.+.+.....+..++ .+.+|||||.. .+...
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHH
Confidence 456789999999999999999999998764333334444444444344442 58899999953 23333
Q ss_pred hHHHhcc---ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHHHHHHHHHcC--Cc
Q 028283 72 TRSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKENG--LL 144 (211)
Q Consensus 72 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~ 144 (211)
...+++. +|++++|+|++++.+.... .++..+.. .+.|+++++||+|+...... ..+++++.+...+ ..
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence 4445543 5799999999875443333 22333332 37999999999998643211 2334445555543 47
Q ss_pred EEEEeCCCCCCHH
Q 028283 145 FLEASARTAQNVE 157 (211)
Q Consensus 145 ~~~~s~~~~~~i~ 157 (211)
++++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999873
No 169
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=3.9e-21 Score=143.85 Aligned_cols=159 Identities=21% Similarity=0.178 Sum_probs=100.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEE--EEEEC---------------------------C----
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGAR--MVTID---------------------------G---- 52 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~--~~~~~---------------------------~---- 52 (211)
++|+++|+.|+|||||+..|.+..... ......+.+.... ...+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997542111 0000101111111 00000 1
Q ss_pred EEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--C
Q 028283 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--S 130 (211)
Q Consensus 53 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~ 130 (211)
...++.||||||++.+...+...+..+|++++|+|+.++.........+..+.... ..|+++++||+|+...... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~--~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG--LKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC--CCcEEEEEEchhccCHHHHHHH
Confidence 12578999999999988888888889999999999987421111122222222221 3579999999999642211 1
Q ss_pred HHHHHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 131 KEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 131 ~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
.++...++.. .+.+++++|+++|.|++++++.|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 1233333333 256799999999999999999887654
No 170
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1e-20 Score=156.28 Aligned_cols=164 Identities=15% Similarity=0.084 Sum_probs=113.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchh----h---hchHHHhc
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----R---SITRSYYR 77 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~----~---~~~~~~~~ 77 (211)
....|+|+|.|+||||||+|+|.+.+......+.++.......+.+.+ ..+.+||+||.... . ......+.
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 346899999999999999999998765443334434444444455554 46899999995321 1 11233457
Q ss_pred cccEEEEEEeCCCH----hHHHHHHHHHHHHHHhc-----------CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC
Q 028283 78 GAAGALLVYDITRR----ETFNHLSSWLEDARQHA-----------NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG 142 (211)
Q Consensus 78 ~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 142 (211)
.+|++|+|+|+++. +.+..+..+...+..+. ..+.|++||+||+|+++.... .+.........+
T Consensus 236 radvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g 314 (500)
T PRK12296 236 RCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARG 314 (500)
T ss_pred hcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcC
Confidence 79999999999753 34445555555554432 247899999999999653322 223333444557
Q ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028283 143 LLFLEASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 143 ~~~~~~s~~~~~~i~~~~~~i~~~i~~~~ 171 (211)
++++++|++++.|+++++.+|.+.+....
T Consensus 315 ~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 315 WPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 89999999999999999999988876543
No 171
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.87 E-value=1e-21 Score=134.90 Aligned_cols=163 Identities=27% Similarity=0.495 Sum_probs=141.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||.++|++..|||||+-++.++.+.+.+..+.|+.+-.+++.+.+..+.+.+||.+|++++....+.....+-+++|+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC----CCCC-CHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028283 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH----RRAV-SKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~----~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
||++.+.++..+..|+...+......+| |++++|.|.-- +.+. -..+++.+++-.+++++++|+....|++++|
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF 178 (205)
T ss_pred EecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence 9999999999999999998877765555 56799999721 1111 1234567788899999999999999999999
Q ss_pred HHHHHHHHH
Q 028283 161 IKTAAKILQ 169 (211)
Q Consensus 161 ~~i~~~i~~ 169 (211)
.-++.++..
T Consensus 179 K~vlAklFn 187 (205)
T KOG1673|consen 179 KIVLAKLFN 187 (205)
T ss_pred HHHHHHHhC
Confidence 988877753
No 172
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=1.4e-20 Score=156.05 Aligned_cols=158 Identities=23% Similarity=0.131 Sum_probs=107.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhc-----------h
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-----------T 72 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-----------~ 72 (211)
..++|+++|.+++|||||+|+|++..... ...+..+.+.....+..++. .+.+|||||....... .
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 45899999999999999999999876432 22222233333344445554 6789999996543321 2
Q ss_pred HHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-H----cCCcEEE
Q 028283 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-E----NGLLFLE 147 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~ 147 (211)
..+++.+|++|+|+|+.++.+..... ++..+.. .+.|+++|+||+|+.+. ....++...... . ..+++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceEE
Confidence 34678999999999999876655443 2233322 37999999999999721 111222222222 1 2468999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHH
Q 028283 148 ASARTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 148 ~s~~~~~~i~~~~~~i~~~i~~ 169 (211)
+||++|.|++++|+++.+.+..
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998876653
No 173
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.86 E-value=1.8e-20 Score=135.23 Aligned_cols=156 Identities=20% Similarity=0.126 Sum_probs=102.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh--------chHHHhc
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYR 77 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~~~ 77 (211)
..+|+++|++|+|||||+++|.+.................. .........+.+|||||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998765433222212211111 11233345788999999653322 3345678
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-CCcEEEEeCCCCCCH
Q 028283 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNV 156 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i 156 (211)
.+|++++|+|+.++.+ .....+...+... +.|+++++||+|+........+....+.... ..+++.+|++++.++
T Consensus 82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 9999999999998722 1122223333322 6899999999999643222223333444444 357999999999999
Q ss_pred HHHHHHHHHH
Q 028283 157 EEAFIKTAAK 166 (211)
Q Consensus 157 ~~~~~~i~~~ 166 (211)
+++++.|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 174
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=2.3e-20 Score=135.68 Aligned_cols=155 Identities=23% Similarity=0.143 Sum_probs=102.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh-----------chH
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-----------ITR 73 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----------~~~ 73 (211)
.++|+++|++|+|||||+++|++..... ...+..+.......+..++. .+.+|||||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 5799999999999999999999876432 22222233333333445554 467999999643211 123
Q ss_pred HHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-HHc----CCcEEEE
Q 028283 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-KEN----GLLFLEA 148 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~~~~~ 148 (211)
..+..+|++++|+|+.++.+..... ++..+.. .+.|+++++||+|+........+...+.. ... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 3567899999999999876654432 2222222 37899999999999754322222222222 222 3679999
Q ss_pred eCCCCCCHHHHHHHHHHH
Q 028283 149 SARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 149 s~~~~~~i~~~~~~i~~~ 166 (211)
|++++.|+.++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999888753
No 175
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.86 E-value=5.3e-20 Score=149.32 Aligned_cols=163 Identities=16% Similarity=0.091 Sum_probs=114.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchh-------hhchHHHhcc
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-------RSITRSYYRG 78 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~ 78 (211)
...|+++|.|+||||||+|+|++.+......+.++.......+..++ ...+.++||||.... .......+..
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 34799999999999999999998765433344434444444444442 235789999996431 1122335788
Q ss_pred ccEEEEEEeCC---CHhHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC--CcEEEEeCC
Q 028283 79 AAGALLVYDIT---RRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASAR 151 (211)
Q Consensus 79 ~d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~ 151 (211)
+|++++|+|++ +...+.....|++.+..+.. .+.|+++|+||+|+.....+ .+....+....+ .+++.+||+
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence 99999999988 44566777777777766532 46899999999998653322 233444444433 468999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 028283 152 TAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 152 ~~~~i~~~~~~i~~~i~~~ 170 (211)
++.+++++++.|.+.+.+.
T Consensus 317 tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCcCHHHHHHHHHHHhhhC
Confidence 9999999999999887654
No 176
>PRK00089 era GTPase Era; Reviewed
Probab=99.86 E-value=2.1e-20 Score=147.47 Aligned_cols=159 Identities=20% Similarity=0.151 Sum_probs=105.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh--------hchHHHh
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--------SITRSYY 76 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------~~~~~~~ 76 (211)
+.-.|+|+|++|||||||+|+|++.........+.+.......+... ...++.+|||||..... ......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 34569999999999999999999887654433332222222222222 23678999999964322 2334467
Q ss_pred ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCCCCC
Q 028283 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQN 155 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~ 155 (211)
..+|++++|+|+++..+ ......+..+. ..+.|+++|+||+|+.............+....+ .+++++|++++.|
T Consensus 83 ~~~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 83 KDVDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred hcCCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 89999999999988322 11122222232 2378999999999996432222234444444444 5699999999999
Q ss_pred HHHHHHHHHHHHH
Q 028283 156 VEEAFIKTAAKIL 168 (211)
Q Consensus 156 i~~~~~~i~~~i~ 168 (211)
+++++++|.+.+.
T Consensus 159 v~~L~~~L~~~l~ 171 (292)
T PRK00089 159 VDELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999887763
No 177
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=3.1e-20 Score=157.94 Aligned_cols=155 Identities=20% Similarity=0.206 Sum_probs=114.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+.|+++|+.++|||||+++|++.. +.++.....+.+.....+..++ ..+.+||+||++.+.......+..+|++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 479999999999999999999643 3334444555555555555555 67899999999999988888999999999
Q ss_pred EEEeCCC---HhHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCC--CHHHHHHHHHHc----CCcEEEEeCCCC
Q 028283 84 LVYDITR---RETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV--SKEEGEQFAKEN----GLLFLEASARTA 153 (211)
Q Consensus 84 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~s~~~~ 153 (211)
+|+|+++ +.+.+.+ ..+.. .++| ++|++||+|+.+.... ..++...+.... +++++++|+++|
T Consensus 79 LVVDa~~G~~~qT~ehl----~il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL----AVLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999998 3443333 22222 2677 9999999999753322 123445555443 578999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 028283 154 QNVEEAFIKTAAKILQN 170 (211)
Q Consensus 154 ~~i~~~~~~i~~~i~~~ 170 (211)
.|++++++.|.+.+...
T Consensus 152 ~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 152 QGIGELKKELKNLLESL 168 (581)
T ss_pred CCchhHHHHHHHHHHhC
Confidence 99999998887766443
No 178
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=4e-20 Score=153.43 Aligned_cols=146 Identities=23% Similarity=0.186 Sum_probs=103.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcch--------hhhchHHHhc
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSYYR 77 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~~~ 77 (211)
++|+++|.+|||||||+|+|.+.... ....+.++.+.....+.+++ ..+.+|||||.+. .......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 22233334444455556666 5689999999876 2334556788
Q ss_pred cccEEEEEEeCCCHhHHH--HHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCC
Q 028283 78 GAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQ 154 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 154 (211)
.+|++|+|+|+.++.+.. .+..|+. . .+.|+++++||+|+... .....++ ...++ .++++|+++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998753332 2233322 2 27999999999997431 1222222 34455 48999999999
Q ss_pred CHHHHHHHHHH
Q 028283 155 NVEEAFIKTAA 165 (211)
Q Consensus 155 ~i~~~~~~i~~ 165 (211)
|++++++.+.+
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999998887
No 179
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=3.1e-20 Score=141.59 Aligned_cols=160 Identities=20% Similarity=0.107 Sum_probs=115.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcch--------hhhchHHH
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSY 75 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~ 75 (211)
-+.--|+++|.|++|||||+|+|++.+....+....++...+..+...+ +.++.|+||||.-. ........
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 3456799999999999999999999999888877777777777665555 67899999999332 22245556
Q ss_pred hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCCCC
Q 028283 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQ 154 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~ 154 (211)
+..+|+++||+|++++... .....++.+.. .+.|+++++||.|...+..........+..... ..++++||++|.
T Consensus 83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred hccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence 7899999999999884321 11223334433 378999999999987655421233333333333 369999999999
Q ss_pred CHHHHHHHHHHHHH
Q 028283 155 NVEEAFIKTAAKIL 168 (211)
Q Consensus 155 ~i~~~~~~i~~~i~ 168 (211)
|++.+.+.+...+.
T Consensus 159 n~~~L~~~i~~~Lp 172 (298)
T COG1159 159 NVDTLLEIIKEYLP 172 (298)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999888777664
No 180
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=4.9e-20 Score=158.53 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=110.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEE--EEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG--ARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
..+.|+|+|+.++|||||+++|....+.....+..+.+.. ...+..++....+.||||||++.|...+...+..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 5679999999999999999999987765443333332222 22233344557899999999999999999999999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHH-------HHHcC--CcEEEEeCCCC
Q 028283 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF-------AKENG--LLFLEASARTA 153 (211)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~s~~~~ 153 (211)
|+|+|+++....+....+ ..+ ...++|++|++||+|+.... .+..... ...++ ++++++||++|
T Consensus 323 ILVVDA~dGv~~QT~E~I-~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAI-NYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEECcCCCChhhHHHH-HHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 999999884322222221 222 22479999999999996522 2222221 22233 67999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028283 154 QNVEEAFIKTAAKI 167 (211)
Q Consensus 154 ~~i~~~~~~i~~~i 167 (211)
.|+++++++|....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999887653
No 181
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=5.7e-20 Score=156.56 Aligned_cols=162 Identities=23% Similarity=0.268 Sum_probs=115.8
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCC--C-----CCC------CCCeeeEEEEEEEEE-----CCEEEEEEEEeC
Q 028283 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRF--Q-----PVH------DLTIGVEFGARMVTI-----DGRPIKLQIWDT 62 (211)
Q Consensus 1 m~~~~~~~I~v~G~~~~GKSsli~~l~~~~~--~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~ 62 (211)
|..++.-+|+++|+.++|||||+.+|+.... . ... ....|.++....+.+ ++..+.+.||||
T Consensus 2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDT 81 (600)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDT 81 (600)
T ss_pred CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEEC
Confidence 4556677999999999999999999986321 1 111 112244444333322 555788999999
Q ss_pred CCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC
Q 028283 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG 142 (211)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 142 (211)
||+..+...+..++..+|++|+|+|+++.........|..... .+.|+++|+||+|+.... ......++....+
T Consensus 82 PGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~----~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg 155 (600)
T PRK05433 82 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NDLEIIPVLNKIDLPAAD--PERVKQEIEDVIG 155 (600)
T ss_pred CCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEEEECCCCCccc--HHHHHHHHHHHhC
Confidence 9999999999999999999999999998655554544433221 378999999999986422 1122233444445
Q ss_pred Cc---EEEEeCCCCCCHHHHHHHHHHHHH
Q 028283 143 LL---FLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 143 ~~---~~~~s~~~~~~i~~~~~~i~~~i~ 168 (211)
+. ++.+||++|.|+++++++|.+.+.
T Consensus 156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 156 IDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred CCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 43 899999999999999999887764
No 182
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=2.8e-20 Score=154.16 Aligned_cols=151 Identities=21% Similarity=0.174 Sum_probs=105.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc--------chhhhchHHHhcc
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ--------ESFRSITRSYYRG 78 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~--------~~~~~~~~~~~~~ 78 (211)
+|+++|.+|||||||+|+|++..... ...+.++.+.....+.+++. .+.+|||||. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999876432 22233344444444555554 5889999996 3344566778899
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHH
Q 028283 79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVE 157 (211)
Q Consensus 79 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~ 157 (211)
+|++++|+|+.+..+.... .+...+.+ .++|+++|+||+|+...... ..+ ....++ +++++||.+|.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 9999999999875332221 22222332 27899999999998653321 122 234565 69999999999999
Q ss_pred HHHHHHHHHHHH
Q 028283 158 EAFIKTAAKILQ 169 (211)
Q Consensus 158 ~~~~~i~~~i~~ 169 (211)
++++.+.+.+..
T Consensus 150 ~ll~~i~~~l~~ 161 (429)
T TIGR03594 150 DLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHhcCc
Confidence 999998877633
No 183
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.85 E-value=7.1e-20 Score=158.76 Aligned_cols=153 Identities=20% Similarity=0.227 Sum_probs=110.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+.|+|+|+.++|||||+++|....+........+.+.....+.+++ ..+.||||||++.|..++...+..+|++|+
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 568999999999999999999998776655444444444444455554 568899999999999999989999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHH-------HHHHcC--CcEEEEeCCCCCC
Q 028283 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ-------FAKENG--LLFLEASARTAQN 155 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~s~~~~~~ 155 (211)
|||+++....+....| ......++|++|++||+|+.+.. .+.... ++..++ ++++++||++|.|
T Consensus 367 VVdAddGv~~qT~e~i----~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~G 439 (787)
T PRK05306 367 VVAADDGVMPQTIEAI----NHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEG 439 (787)
T ss_pred EEECCCCCCHhHHHHH----HHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCC
Confidence 9999884221111112 22222489999999999996422 122111 122233 6799999999999
Q ss_pred HHHHHHHHHHH
Q 028283 156 VEEAFIKTAAK 166 (211)
Q Consensus 156 i~~~~~~i~~~ 166 (211)
+++++++|...
T Consensus 440 I~eLle~I~~~ 450 (787)
T PRK05306 440 IDELLEAILLQ 450 (787)
T ss_pred chHHHHhhhhh
Confidence 99999998753
No 184
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=6.6e-21 Score=133.32 Aligned_cols=161 Identities=25% Similarity=0.346 Sum_probs=122.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCC------C-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHh
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF------Q-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYY 76 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~ 76 (211)
...+.|+++|..++|||||+.++..... + ....+++|... .++.+. ...+.+||.+|++..+++|..||
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni--g~i~v~--~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI--GTIEVC--NAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee--cceeec--cceeEEEEcCChHHHHHHHHHHH
Confidence 3457899999999999999988753311 1 12233444333 334444 45689999999999999999999
Q ss_pred ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHHHH---H---cCCcEEEEe
Q 028283 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK---E---NGLLFLEAS 149 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~---~~~~~~~~s 149 (211)
..++++|++||+++++.++.....++.+..... .+.|+++.+||.|+.+. +...++..... . ...++.++|
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pvS 168 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPVS 168 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccch
Confidence 999999999999999988887776666644443 79999999999999663 33344443333 2 345699999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 028283 150 ARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~~~i~~~ 170 (211)
+.+|+||++..+|++..+.++
T Consensus 169 al~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 169 ALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999888655
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=7.4e-20 Score=159.42 Aligned_cols=154 Identities=19% Similarity=0.138 Sum_probs=103.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcch--------hhhchHHH
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSY 75 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~--------~~~~~~~~ 75 (211)
...+|+++|.++||||||+|+|++..... ...+.++.+.......+++ ..+.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 34789999999999999999999876432 2223333333333333444 4578999999653 23345567
Q ss_pred hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCC
Q 028283 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQ 154 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 154 (211)
+..+|++|+|+|+++...... ..|...+.. .+.|+++|+||+|+.... .....+.. .+. ..+++||++|.
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~~-lg~~~~~~iSA~~g~ 422 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFWK-LGLGEPYPISAMHGR 422 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHHH-cCCCCeEEEECCCCC
Confidence 899999999999987422111 133344433 489999999999985421 12222222 232 46789999999
Q ss_pred CHHHHHHHHHHHHHH
Q 028283 155 NVEEAFIKTAAKILQ 169 (211)
Q Consensus 155 ~i~~~~~~i~~~i~~ 169 (211)
|+++++++|.+.+..
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999988754
No 186
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.84 E-value=8.4e-20 Score=155.42 Aligned_cols=146 Identities=20% Similarity=0.209 Sum_probs=108.9
Q ss_pred cCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhc------hHHHh--ccccEEEE
Q 028283 13 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI------TRSYY--RGAAGALL 84 (211)
Q Consensus 13 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~------~~~~~--~~~d~~i~ 84 (211)
|++|+|||||+|+|.+........+..+.+.....+.+++. .+.+|||||+..+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999988765555566666666666666654 4789999998776543 33333 47899999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028283 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
|+|+++.+.. ..+...+. +.+.|+++++||+|+.+..... .+.+.+.+..+++++++|+++|.|++++++.+.
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999874321 12222222 2489999999999996544443 346777888899999999999999999999998
Q ss_pred HHH
Q 028283 165 AKI 167 (211)
Q Consensus 165 ~~i 167 (211)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 187
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.84 E-value=1.5e-20 Score=139.17 Aligned_cols=159 Identities=23% Similarity=0.231 Sum_probs=106.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC----------------CCCeeeEEEEEEEEEC--CEEEEEEEEeCCCcc
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMVTID--GRPIKLQIWDTAGQE 66 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~ 66 (211)
...+|+++|+.++|||||+.+|+........ ....+.+.......+. .....+.++||||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999854421110 0001122222222232 445678999999999
Q ss_pred hhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC-CCHHHHH-HHHHHc---
Q 028283 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGE-QFAKEN--- 141 (211)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~-~~~~~~--- 141 (211)
.+.......+..+|++|+|+|+.+..... ....+..+... +.|++|++||+|+..... ...++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 99988888999999999999998754322 23333333333 889999999999962110 0011122 233332
Q ss_pred ---CCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 142 ---GLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 142 ---~~~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
.++++++|+++|.|++++++.|.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 35799999999999999999888765
No 188
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.84 E-value=7.4e-23 Score=144.58 Aligned_cols=172 Identities=36% Similarity=0.641 Sum_probs=147.4
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEE-EEEEEEeCCCcchhhhchHHHhcccc
Q 028283 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP-IKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 2 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
..+..++++|+|..|+|||+++.+++...++..+..++++++..+...++... ++++|||.+|++++..+...+++.++
T Consensus 21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 34678899999999999999999999999999999999999988877776654 58899999999999999999999999
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCCCCCC-HHHHHHHHHHcCCc-EEEEeCCCCC
Q 028283 81 GALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVS-KEEGEQFAKENGLL-FLEASARTAQ 154 (211)
Q Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~-~~~~s~~~~~ 154 (211)
+.++|||++..-+|+....|.+.+..... .-.|+++..||+|+....... ..+..++++++++. .+++|++.+.
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 99999999999999999999998865442 346778889999986533222 36677888889885 9999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 028283 155 NVEEAFIKTAAKILQNIQE 173 (211)
Q Consensus 155 ~i~~~~~~i~~~i~~~~~~ 173 (211)
++.|+-..++++++..-.+
T Consensus 181 ni~Ea~r~lVe~~lvnd~q 199 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVNDEQ 199 (229)
T ss_pred ChhHHHHHHHHHHHhhccC
Confidence 9999999999888766543
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.84 E-value=1.2e-19 Score=129.69 Aligned_cols=151 Identities=21% Similarity=0.135 Sum_probs=102.5
Q ss_pred EEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh-------chHHHhccccEE
Q 028283 11 IIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-------ITRSYYRGAAGA 82 (211)
Q Consensus 11 v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~d~~ 82 (211)
++|++|+|||||+++|.+.... .......+............ ...+.+||+||...... ....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999977554 23333323333333333322 45789999999765432 445578999999
Q ss_pred EEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH---HHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028283 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE---EGEQFAKENGLLFLEASARTAQNVEEA 159 (211)
Q Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~i~~~ 159 (211)
++|+|+.++....... +..... ..+.|+++++||+|+......... .........+.+++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999876554443 222222 248999999999998654322211 112223335678999999999999999
Q ss_pred HHHHHHH
Q 028283 160 FIKTAAK 166 (211)
Q Consensus 160 ~~~i~~~ 166 (211)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9988764
No 190
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=2e-19 Score=149.32 Aligned_cols=156 Identities=24% Similarity=0.146 Sum_probs=104.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh-----------ch
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-----------IT 72 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----------~~ 72 (211)
..++|+++|.+|+|||||+|+|++..... ...+..+.+.....+..++ ..+.+|||||...... ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 46899999999999999999999765322 2223333333333344444 4578999999643211 12
Q ss_pred HHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHH-HHH----HcCCcEEE
Q 028283 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ-FAK----ENGLLFLE 147 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~----~~~~~~~~ 147 (211)
..+++.+|++|+|+|+.++.+..... ++..+.. .+.|+++++||+|+.+... .++... ... ...+++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence 34678999999999999876655443 2233322 3789999999999963221 122221 111 13568999
Q ss_pred EeCCCCCCHHHHHHHHHHHHH
Q 028283 148 ASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 148 ~s~~~~~~i~~~~~~i~~~i~ 168 (211)
+||+++.|++++++.+.+...
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999877654
No 191
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.83 E-value=5e-19 Score=154.10 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=112.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhc----------hHHH
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI----------TRSY 75 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~----------~~~~ 75 (211)
.++|+++|++|||||||+|+|.+........ .|.+...+...++.....+.+|||||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~--pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNW--AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCC--CCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 4789999999999999999999876533333 355555555555555667899999997655321 2223
Q ss_pred h--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Q 028283 76 Y--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA 153 (211)
Q Consensus 76 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 153 (211)
+ ..+|++|+|+|+++.+... .+...+.+ .+.|+++++||+|+.+.+.. ..+.+++.+..+++++++|++++
T Consensus 81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 2 4789999999998854322 23333333 37999999999998654444 34567777889999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028283 154 QNVEEAFIKTAAKI 167 (211)
Q Consensus 154 ~~i~~~~~~i~~~i 167 (211)
+|++++.+.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999988887654
No 192
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.83 E-value=7.3e-19 Score=148.89 Aligned_cols=160 Identities=20% Similarity=0.178 Sum_probs=105.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC----------------CEEEEEEEEeCCCcchh
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID----------------GRPIKLQIWDTAGQESF 68 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~l~D~~G~~~~ 68 (211)
..+-|+++|++++|||||+++|.+..+........+.+.....+..+ .....+.||||||++.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 34679999999999999999999887654332222211111111111 11123889999999999
Q ss_pred hhchHHHhccccEEEEEEeCCC---HhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC----CC--------HHH
Q 028283 69 RSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA----VS--------KEE 133 (211)
Q Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~--------~~~ 133 (211)
..++..+++.+|++++|||+++ +.++..+. .+.. .+.|+++++||+|+.+... .. .+.
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHH
Confidence 9999999999999999999987 44443332 2222 3789999999999963110 00 000
Q ss_pred H------------HHHHH------------H--cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028283 134 G------------EQFAK------------E--NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 134 ~------------~~~~~------------~--~~~~~~~~s~~~~~~i~~~~~~i~~~i~~~~ 171 (211)
. .++.. . ...+++++||++|+|+++++++|.......+
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l 219 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYL 219 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHh
Confidence 0 01111 0 1357999999999999999998876655434
No 193
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.1e-20 Score=131.16 Aligned_cols=165 Identities=29% Similarity=0.544 Sum_probs=143.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++++++|..|.||||++++++.+.+...+.+++|.........-+-..+++..|||+|++.+..+...++=+....|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 37899999999999999999999999999999999999988876555557899999999999999999999999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028283 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
+||+..+.++.++..|...+.+... ++|+++.+||.|..+.. .......+.+..++.+++.|++.+-|+..-|-++.
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La 165 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA 165 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHh
Confidence 9999999999999999999877765 79999999999986533 22334456666788899999999999999999999
Q ss_pred HHHHHHHh
Q 028283 165 AKILQNIQ 172 (211)
Q Consensus 165 ~~i~~~~~ 172 (211)
+++.-...
T Consensus 166 rKl~G~p~ 173 (216)
T KOG0096|consen 166 RKLTGDPS 173 (216)
T ss_pred hhhcCCCC
Confidence 88854443
No 194
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.82 E-value=5.2e-19 Score=132.29 Aligned_cols=117 Identities=16% Similarity=0.341 Sum_probs=88.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccc-cEEEEEE
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGA-AGALLVY 86 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~-d~~i~v~ 86 (211)
+|+++|++|+|||+|+++|....+.....++ ............+....+.+||+||+.++...+..+++.+ +++|||+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988776654433 2222222122223456789999999999999888999998 9999999
Q ss_pred eCCCH-hHHHHHHHHHHHHHHh---cCCCCeEEEEEeCCCCCC
Q 028283 87 DITRR-ETFNHLSSWLEDARQH---ANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 87 d~~~~-~s~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~ 125 (211)
|+.+. .++..+..|+..+... ...+.|+++++||.|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99997 6666666666554322 225899999999999864
No 195
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.82 E-value=2.2e-19 Score=148.39 Aligned_cols=159 Identities=19% Similarity=0.131 Sum_probs=106.3
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCeeeEEEEEEEEEC
Q 028283 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMVTID 51 (211)
Q Consensus 1 m~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 51 (211)
|+....++|+++|++++|||||+++|+....... .....|.+.......++
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~ 80 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE 80 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence 6777889999999999999999999984321110 00123455555555555
Q ss_pred CEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHH-HHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC--
Q 028283 52 GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-- 128 (211)
Q Consensus 52 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-- 128 (211)
.....+.||||||++.+.......+..+|++|+|+|++++... .....++..+.... ..|+++++||+|+.....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--INQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--CCeEEEEEEccccccccHHH
Confidence 5567899999999988876666667899999999999873111 11122222222221 246999999999964221
Q ss_pred --CCHHHHHHHHHHcC-----CcEEEEeCCCCCCHHHHHH
Q 028283 129 --VSKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 129 --~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~~ 161 (211)
...+++..++...+ .+++++|+++|.|+++..+
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 11234455555544 4699999999999987543
No 196
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.82 E-value=3.2e-18 Score=121.44 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=118.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCC--------CCCC--CeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchH
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------VHDL--TIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR 73 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 73 (211)
....||+|.|+.++||||+++++....... .... +.++......+.+++ ...+.+++||||+++...|.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHHH
Confidence 467899999999999999999998765311 1111 123333333333333 24578999999999999999
Q ss_pred HHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc--CCcEEEEeCC
Q 028283 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN--GLLFLEASAR 151 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~ 151 (211)
.+.+.+.++|+++|.+.+..+ +....++.+.... ..|++|++||.|+.+ ..+.+..++..... ..+++..++.
T Consensus 87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~a~ 161 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEIDAT 161 (187)
T ss_pred HHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeeecc
Confidence 999999999999999998887 4444555554442 299999999999976 45567777766665 7899999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028283 152 TAQNVEEAFIKTAAK 166 (211)
Q Consensus 152 ~~~~i~~~~~~i~~~ 166 (211)
++++..+.++.+...
T Consensus 162 e~~~~~~~L~~ll~~ 176 (187)
T COG2229 162 EGEGARDQLDVLLLK 176 (187)
T ss_pred cchhHHHHHHHHHhh
Confidence 999998888777654
No 197
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=4.7e-19 Score=142.15 Aligned_cols=152 Identities=19% Similarity=0.099 Sum_probs=105.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh---------hchHHHh
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR---------SITRSYY 76 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------~~~~~~~ 76 (211)
..|+++|.|+||||||+|||++.+..-. ..+.++.+.......+.+.. +.++||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 6799999999999999999999887543 33333444444445555544 7899999965322 2566778
Q ss_pred ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028283 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
..+|++|||+|.....+.. +..+..+.+. .++|+++|+||+|-... .+...+|...--..++.+||..|.|+
T Consensus 82 ~eADvilfvVD~~~Git~~--D~~ia~~Lr~--~~kpviLvvNK~D~~~~----e~~~~efyslG~g~~~~ISA~Hg~Gi 153 (444)
T COG1160 82 EEADVILFVVDGREGITPA--DEEIAKILRR--SKKPVILVVNKIDNLKA----EELAYEFYSLGFGEPVPISAEHGRGI 153 (444)
T ss_pred HhCCEEEEEEeCCCCCCHH--HHHHHHHHHh--cCCCEEEEEEcccCchh----hhhHHHHHhcCCCCceEeehhhccCH
Confidence 9999999999997743221 2222222222 27999999999997421 12233333333346999999999999
Q ss_pred HHHHHHHHHHHH
Q 028283 157 EEAFIKTAAKIL 168 (211)
Q Consensus 157 ~~~~~~i~~~i~ 168 (211)
.++.+.+++.+.
T Consensus 154 ~dLld~v~~~l~ 165 (444)
T COG1160 154 GDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHhhcC
Confidence 999988888774
No 198
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.81 E-value=3.5e-18 Score=130.24 Aligned_cols=151 Identities=25% Similarity=0.212 Sum_probs=103.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hchHHHhcccc
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------SITRSYYRGAA 80 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d 80 (211)
+|+++|++|+|||||+++|.+........+..+.+.....+.+++ ..+++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998764433333334444445455555 468899999974322 23456789999
Q ss_pred EEEEEEeCCCHh-HHHHHHHHHHH-----------------------------------------HHHh-----------
Q 028283 81 GALLVYDITRRE-TFNHLSSWLED-----------------------------------------ARQH----------- 107 (211)
Q Consensus 81 ~~i~v~d~~~~~-s~~~~~~~~~~-----------------------------------------~~~~----------- 107 (211)
++++|+|++++. ....+...+.. +.++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 23323222210 0000
Q ss_pred -----------c--CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 108 -----------A--NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 108 -----------~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
. ..-.|+++|+||+|+.. .++...++.. ..++++|++++.|++++++.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 12369999999999843 3444444432 4589999999999999999888754
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=1.8e-18 Score=150.81 Aligned_cols=157 Identities=24% Similarity=0.223 Sum_probs=108.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcch----------hhhc-h
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----------FRSI-T 72 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~-~ 72 (211)
..++|+++|.+|||||||+|+|++.... ....+.++.+.....+.+++.. +.+|||||..+ +..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999988743 2223333555555556667655 56999999532 1111 2
Q ss_pred HHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-H----cCCcEEE
Q 028283 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-E----NGLLFLE 147 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~----~~~~~~~ 147 (211)
..+++.+|++|+|+|+++..+...+.. +..+.. .++|+++|+||+|+.+... .+....... . ...++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 344788999999999999877666543 333332 3799999999999965321 122222111 1 2346799
Q ss_pred EeCCCCCCHHHHHHHHHHHHHH
Q 028283 148 ASARTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 148 ~s~~~~~~i~~~~~~i~~~i~~ 169 (211)
+||++|.|++++++.+.+.+.+
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998887754
No 200
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=1e-18 Score=126.31 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=99.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcch----------hhhchHHHhc
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----------FRSITRSYYR 77 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~~~ 77 (211)
.|+++|++|+|||||++.|.+....+...++.+.+.....+..++ .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999997666555555555555555444444 788999999432 3333444443
Q ss_pred ---cccEEEEEEeCCCHhHH--HHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC--HHHHHHHHH--HcCCcEEEE
Q 028283 78 ---GAAGALLVYDITRRETF--NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAK--ENGLLFLEA 148 (211)
Q Consensus 78 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~ 148 (211)
..+++++++|..+..+. ..+..|+.. .+.|+++++||+|+....... ......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 35688999998765322 222233222 268999999999985432211 112222222 234579999
Q ss_pred eCCCCCCHHHHHHHHHHH
Q 028283 149 SARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 149 s~~~~~~i~~~~~~i~~~ 166 (211)
|++++.++.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999988765
No 201
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.81 E-value=3.2e-19 Score=120.85 Aligned_cols=156 Identities=22% Similarity=0.306 Sum_probs=116.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|-.++|||||+..|.+... ....++.|.. .+.+..++ ++++.+||.+|+...+..|..||.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn--~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFN--TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcc--eEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence 4679999999999999999999986652 3334444443 34444444 578999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHc-----CCcEEEEeCCCCCCHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-----GLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~ 157 (211)
||+|.+|.-.++.+...+-++.... ...+|++|+.||.|+... +..++....+... -.-+.++|+.+++|+.
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta--a~~eeia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA--AKVEEIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh--cchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 9999999888887776665554433 368999999999998542 2223322222211 2347899999999998
Q ss_pred HHHHHHHH
Q 028283 158 EAFIKTAA 165 (211)
Q Consensus 158 ~~~~~i~~ 165 (211)
+-.+++..
T Consensus 169 dg~~wv~s 176 (185)
T KOG0074|consen 169 DGSDWVQS 176 (185)
T ss_pred Ccchhhhc
Confidence 88777654
No 202
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.80 E-value=2.9e-18 Score=130.92 Aligned_cols=113 Identities=18% Similarity=0.155 Sum_probs=82.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCC----------------CCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhc
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 71 (211)
+|+++|+.|+|||||+++|+........ ....+.++......+.....++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999864211100 011233343444444445677999999999999888
Q ss_pred hHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028283 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (211)
+..+++.+|++|+|+|+.+.... ....++..+.. .+.|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 89999999999999999886432 34455555543 378999999999985
No 203
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.80 E-value=1.1e-18 Score=148.31 Aligned_cols=156 Identities=21% Similarity=0.221 Sum_probs=111.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC--CCCCCC------------CCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchH
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDK--RFQPVH------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR 73 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 73 (211)
+|+++|+.++|||||+++|+.. .+.... ....+.++......+......+.||||||+..+...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999863 221111 11224555555555555567899999999999999999
Q ss_pred HHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC-CHHHHHHHHH-------HcCCcE
Q 028283 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAK-------ENGLLF 145 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~~ 145 (211)
.+++.+|++++|+|+.+.. ......|+..+... +.|+++++||+|+.+.... ..++...+.. ...+++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 9999999999999998742 34445565555443 7899999999998653211 1233333332 235689
Q ss_pred EEEeCCCCC----------CHHHHHHHHHHHH
Q 028283 146 LEASARTAQ----------NVEEAFIKTAAKI 167 (211)
Q Consensus 146 ~~~s~~~~~----------~i~~~~~~i~~~i 167 (211)
+.+|+++|. ++..+|+.|++.+
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 999999996 6888887777665
No 204
>PRK10218 GTP-binding protein; Provisional
Probab=99.80 E-value=4.1e-18 Score=144.78 Aligned_cols=159 Identities=18% Similarity=0.148 Sum_probs=112.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC--CCCCC------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 70 (211)
..-+|+++|+.++|||||+++|+.. .+... .....+.++......++.....+.+|||||+..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 4568999999999999999999963 22221 123446677766666766778899999999999999
Q ss_pred chHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC-CCHHHHHHHHHH-------cC
Q 028283 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAKE-------NG 142 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~ 142 (211)
.+..+++.+|++|+|+|+.+.... ....++..+.. .+.|.++++||+|+..... ...++...+... ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 999999999999999999875322 22333333333 3789999999999864321 112333333321 34
Q ss_pred CcEEEEeCCCCC----------CHHHHHHHHHHHH
Q 028283 143 LLFLEASARTAQ----------NVEEAFIKTAAKI 167 (211)
Q Consensus 143 ~~~~~~s~~~~~----------~i~~~~~~i~~~i 167 (211)
++++.+|+++|. ++..+++.|+..+
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 679999999998 4556655554444
No 205
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.80 E-value=1.1e-18 Score=144.17 Aligned_cols=155 Identities=19% Similarity=0.140 Sum_probs=104.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhC--CCCCC---------------------------CCCCeeeEEEEEEEEECCEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV---------------------------HDLTIGVEFGARMVTIDGRP 54 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~ 54 (211)
...++|+++|+.++|||||+.+|+.. ..... .....+.+.......+....
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 46789999999999999999999852 11100 00112444444444555556
Q ss_pred EEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHH--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC---
Q 028283 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--- 129 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--- 129 (211)
..+.||||||++.+.......+..+|++|+|+|+++.++... ...++. +.... ...|++|++||+|+.+....
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~-~~~~iIVviNK~Dl~~~~~~~~~ 162 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTL-GINQLIVAINKMDSVNYDEEEFE 162 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHc-CCCeEEEEEEChhccCccHHHHH
Confidence 789999999999887777777889999999999998743211 111111 22222 13579999999999642211
Q ss_pred -CHHHHHHHHHHcC-----CcEEEEeCCCCCCHHHHH
Q 028283 130 -SKEEGEQFAKENG-----LLFLEASARTAQNVEEAF 160 (211)
Q Consensus 130 -~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~ 160 (211)
..+++..+++..+ ++++++||++|.|+.+.+
T Consensus 163 ~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 163 AIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1244555666554 569999999999998754
No 206
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.80 E-value=1.3e-18 Score=130.70 Aligned_cols=149 Identities=19% Similarity=0.149 Sum_probs=94.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------------------------CCCeeeEEEEEEEEECCEEEEEE
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------------------------DLTIGVEFGARMVTIDGRPIKLQ 58 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 58 (211)
+|+++|++++|||||+++|+........ ....+.+.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999754321110 00012233333333333445688
Q ss_pred EEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC----CHHHH
Q 028283 59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV----SKEEG 134 (211)
Q Consensus 59 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~ 134 (211)
+|||||++.+.......+..+|++|+|+|++++..... ...+..+.... ..++++|+||+|+.+.... ...+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~~--~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLLG--IRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHcC--CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 99999998887767777899999999999987532221 12222222221 2457788999998642211 11234
Q ss_pred HHHHHHcCC---cEEEEeCCCCCCHHHH
Q 028283 135 EQFAKENGL---LFLEASARTAQNVEEA 159 (211)
Q Consensus 135 ~~~~~~~~~---~~~~~s~~~~~~i~~~ 159 (211)
..+....+. +++++||+++.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 444555553 4899999999998754
No 207
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.8e-19 Score=122.34 Aligned_cols=162 Identities=22% Similarity=0.312 Sum_probs=118.1
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+...+|+++|-.|+|||+++.++.-...... .|+.+... .++..++..+++||..|+-..+..|..|+.+.|++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnv----e~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNV----ETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCc----cccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence 4678999999999999999988876554333 33334333 233446778999999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHH-HHHHHHHhcCCCCeEEEEEeCCCCCCCC---CCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028283 84 LVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRR---AVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 159 (211)
||+|.+|......... ++..+.+...++..+++++||.|..... ++.........+..-+.++++||.+|+|++++
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence 9999999766544443 3344444444678899999999985321 11112222223334467999999999999999
Q ss_pred HHHHHHHHHHH
Q 028283 160 FIKTAAKILQN 170 (211)
Q Consensus 160 ~~~i~~~i~~~ 170 (211)
.+|+.+-+.++
T Consensus 171 ~DWL~~~l~~~ 181 (182)
T KOG0072|consen 171 MDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHhcc
Confidence 99999887654
No 208
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=6.4e-18 Score=135.72 Aligned_cols=159 Identities=25% Similarity=0.160 Sum_probs=110.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-eeeEEEEEEEEECCEEEEEEEEeCCCcchhhh-----------ch
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-IGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-----------IT 72 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----------~~ 72 (211)
..++|+++|.|++|||||+|+|++....-.+... ++.+.-...+..++.. +.++||+|..+-.. -.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999999988765443332 2333333344555544 77899999432211 34
Q ss_pred HHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-----cCCcEEE
Q 028283 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLE 147 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~ 147 (211)
...+..+|.+++|+|++++.+-+..+- ...+. +.+.+++|++||+|+.+......++.+..... ..+++++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~i-a~~i~---~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRI-AGLIE---EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHH-HHHHH---HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 556788999999999999765433322 12222 24899999999999977544444554433332 2457999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHH
Q 028283 148 ASARTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 148 ~s~~~~~~i~~~~~~i~~~i~~ 169 (211)
+||+++.++.++|+.+.+....
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHH
Confidence 9999999999999887765543
No 209
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.79 E-value=2e-17 Score=140.69 Aligned_cols=160 Identities=21% Similarity=0.209 Sum_probs=103.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC----eeeEEEEEEEE--ECCEE-----E-----EEEEEeCCCcchh
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IGVEFGARMVT--IDGRP-----I-----KLQIWDTAGQESF 68 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~-----~-----~~~l~D~~G~~~~ 68 (211)
..+.|+++|++++|||||+++|.+.......... .|.++...... ..+.. . .+.||||||++.+
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 4567999999999999999999876543333221 22221111100 00111 1 2689999999999
Q ss_pred hhchHHHhccccEEEEEEeCCC---HhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC----CC-----------
Q 028283 69 RSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA----VS----------- 130 (211)
Q Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~----------- 130 (211)
..++...+..+|++|+|+|+++ +.++..+.. +.. .++|+++++||+|+..... ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9988888999999999999987 455444432 222 3799999999999852100 00
Q ss_pred -HH-------HHHHHHHHc---------------CCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028283 131 -KE-------EGEQFAKEN---------------GLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 131 -~~-------~~~~~~~~~---------------~~~~~~~s~~~~~~i~~~~~~i~~~i~~~~ 171 (211)
.+ +........ .++++++|+++|+|++++++.+.......+
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l 221 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYL 221 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHH
Confidence 00 000111111 256899999999999999988775554433
No 210
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=1.1e-17 Score=124.07 Aligned_cols=148 Identities=18% Similarity=0.154 Sum_probs=100.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhc
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 71 (211)
.++|+++|+.++|||||+++|+...... ......+.+.......+.....++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4799999999999999999998541000 01112344555555555555667899999999988887
Q ss_pred hHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCC---CHHHHHHHHHHc-----C
Q 028283 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV---SKEEGEQFAKEN-----G 142 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-----~ 142 (211)
....+..+|++++|+|+..... ......+..+... +.| +++++||+|+...... ..+++..+.... +
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 8888899999999999987432 2222333333332 666 7789999998632221 112344444443 3
Q ss_pred CcEEEEeCCCCCCHH
Q 028283 143 LLFLEASARTAQNVE 157 (211)
Q Consensus 143 ~~~~~~s~~~~~~i~ 157 (211)
++++++|+++|.++.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 679999999998853
No 211
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.79 E-value=2.9e-18 Score=140.73 Aligned_cols=162 Identities=19% Similarity=0.147 Sum_probs=104.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CeeeEEEEE--------------------EEEECC------EEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGAR--------------------MVTIDG------RPIK 56 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~--------------------~~~~~~------~~~~ 56 (211)
...++|+++|+.++|||||+++|.+......... ..+.+.... ....++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 3568999999999999999999975422110000 001111110 000011 1357
Q ss_pred EEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHHH
Q 028283 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEG 134 (211)
Q Consensus 57 ~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~ 134 (211)
+.+||+||++.+...+...+..+|++|+|+|+++..........+..+.... ..|+++++||+|+.+.... ..+++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i 159 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEI 159 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHH
Confidence 8999999999999888888889999999999986431112222233332221 3578999999999653221 12333
Q ss_pred HHHHHHc---CCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 135 EQFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 135 ~~~~~~~---~~~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
..+.... +++++++|+++|+|+++++++|...+
T Consensus 160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 3443332 56899999999999999999888755
No 212
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=4.6e-18 Score=136.86 Aligned_cols=154 Identities=21% Similarity=0.206 Sum_probs=111.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh--------chHHH
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSY 75 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~--------~~~~~ 75 (211)
.-++|+++|.||+|||||+|.|++..... ...+.++-+.-...+.++|.+ +.+.||+|..+... .....
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHHH
Confidence 35899999999999999999999887653 344444666666667778755 67899999765444 24455
Q ss_pred hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028283 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
+..+|.+++|+|.+.+.+-...... . ....+.|+++|.||.|+....... ......+.+++.+|+++++|
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~~-~----~~~~~~~~i~v~NK~DL~~~~~~~-----~~~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLALI-E----LLPKKKPIIVVLNKADLVSKIELE-----SEKLANGDAIISISAKTGEG 363 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHHH-H----hcccCCCEEEEEechhcccccccc-----hhhccCCCceEEEEecCccC
Confidence 7899999999999986322222111 1 233489999999999997643311 11122344799999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028283 156 VEEAFIKTAAKILQN 170 (211)
Q Consensus 156 i~~~~~~i~~~i~~~ 170 (211)
++++.+.|.+.+...
T Consensus 364 l~~L~~~i~~~~~~~ 378 (454)
T COG0486 364 LDALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999998888887666
No 213
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.6e-17 Score=120.34 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=113.0
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC----------cchhhhch
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSIT 72 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~ 72 (211)
.+..+.|+++|.++||||||||+|++++.-.....++|.|.....+.+++. +.++|.|| .+.+....
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i 97 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI 97 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence 456789999999999999999999998755555556688888888888775 67999999 44566667
Q ss_pred HHHhcc---ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH----cCCc-
Q 028283 73 RSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE----NGLL- 144 (211)
Q Consensus 73 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~~~- 144 (211)
..|++. ..++++++|+..+...... ++++-+.. .+.|++|++||+|.....+.. ......+.. ....
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~ 172 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQ 172 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccc
Confidence 777754 3489999999875432222 33333333 389999999999986643332 122223322 2222
Q ss_pred -EEEEeCCCCCCHHHHHHHHHHHHH
Q 028283 145 -FLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 145 -~~~~s~~~~~~i~~~~~~i~~~i~ 168 (211)
++.+|+.++.|++++...|.+.+.
T Consensus 173 ~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 173 WVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred eEEEEecccccCHHHHHHHHHHHhh
Confidence 788999999999999888887764
No 214
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.78 E-value=8.4e-18 Score=116.70 Aligned_cols=135 Identities=23% Similarity=0.256 Sum_probs=98.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC----cchhhhchHHHhccccEEE
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----QESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~~i 83 (211)
||+++|+.|+|||||+++|.+... .+..+..+.+ .+ .++|||| ...+.........++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~-------~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY-------YD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe-------cc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999997654 3333322222 11 3579999 3445555666677999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCCCCHHHHHHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~~ 162 (211)
+|.|++++.+.-. ..+... .+.|+|=|+||+|+... ....+.++++.+..|+. +|.+|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~p-----P~fa~~--f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVFP-----PGFASM--FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccCC-----chhhcc--cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 9999998643211 111222 27899999999999732 33557778888888874 899999999999999887
Q ss_pred HH
Q 028283 163 TA 164 (211)
Q Consensus 163 i~ 164 (211)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 215
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.78 E-value=5.3e-18 Score=139.15 Aligned_cols=163 Identities=19% Similarity=0.185 Sum_probs=102.5
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCeeeEEEEEE--EE------------------EC--C----EEE
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARM--VT------------------ID--G----RPI 55 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~--~~------------------~~--~----~~~ 55 (211)
....++|+++|+.++|||||+.+|.+....... ....+.+..... .. .+ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 357799999999999999999999653211110 001112221110 00 01 0 135
Q ss_pred EEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CHHH
Q 028283 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEE 133 (211)
Q Consensus 56 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~ 133 (211)
.+.||||||++.+..........+|++++|+|+.++.........+..+.... ..|+++++||+|+.+.... ..++
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIG--IKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEEeeccccchhHHHHHHH
Confidence 78999999999887766666777899999999996431111112222222221 3468999999999653321 1233
Q ss_pred HHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 134 GEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 134 ~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
...++.. .+.+++++|++++.|++++++.|...+
T Consensus 164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 3444433 246899999999999999999887765
No 216
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.78 E-value=1.8e-17 Score=141.56 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=104.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+-|+++|+.++|||||+++|.+.. +.++.....+.+.....+...+ ...+.+|||||++.+.......+..+|+++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 358999999999999999999643 2223323333333322232222 234789999999999888888899999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCC--CHHHHHHHHHHcC---CcEEEEeCCCCCCHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV--SKEEGEQFAKENG---LLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~s~~~~~~i~ 157 (211)
+|+|+++... ......+..+... +.| ++||+||+|+.+.... ..++...+....+ .+++++|+++|.|++
T Consensus 80 LVVda~eg~~-~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 80 LVVACDDGVM-AQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 9999987321 1112222222222 455 5799999999653221 1233444544443 679999999999999
Q ss_pred HHHHHHHHHH
Q 028283 158 EAFIKTAAKI 167 (211)
Q Consensus 158 ~~~~~i~~~i 167 (211)
++++.|.+..
T Consensus 156 ~L~~~L~~~~ 165 (614)
T PRK10512 156 ALREHLLQLP 165 (614)
T ss_pred HHHHHHHHhh
Confidence 9999887654
No 217
>COG2262 HflX GTPases [General function prediction only]
Probab=99.77 E-value=2.4e-17 Score=130.59 Aligned_cols=168 Identities=20% Similarity=0.152 Sum_probs=127.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcch---------hhhchHHH
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---------FRSITRSY 75 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~~ 75 (211)
..+.|.++|..++|||||+|+|++.........+.+.+.+...+.+.+ ...+.+.||.|..+ |.+ +...
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks-TLEE 268 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS-TLEE 268 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH-HHHH
Confidence 567899999999999999999998877666666667777777777775 34577899999442 222 3334
Q ss_pred hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028283 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
...+|+++.|+|+++|....++......+........|+|+|.||+|+..... .......... ..+.+||+++.|
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~g 343 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEG 343 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcC
Confidence 56899999999999998888888888888887766899999999999865332 1111111122 589999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccc
Q 028283 156 VEEAFIKTAAKILQNIQEGALDAV 179 (211)
Q Consensus 156 i~~~~~~i~~~i~~~~~~~~~~~~ 179 (211)
++.+.+.|.+.+............
T Consensus 344 l~~L~~~i~~~l~~~~~~~~l~lp 367 (411)
T COG2262 344 LDLLRERIIELLSGLRTEVTLELP 367 (411)
T ss_pred HHHHHHHHHHHhhhcccceEEEcC
Confidence 999999999988766655444433
No 218
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.77 E-value=5.5e-18 Score=127.85 Aligned_cols=162 Identities=20% Similarity=0.329 Sum_probs=102.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCcchhhh-----chHHHhccccE
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRS-----ITRSYYRGAAG 81 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~-----~~~~~~~~~d~ 81 (211)
||+++|+.++||||..+. ..+++.+......+.+.......+ ....+.+.+||+||+..+.. .....++.+++
T Consensus 1 KiLLmG~~~SGKTSi~~v-IF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSV-IFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHH-HHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHH-HHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999995554 445555554454455555554444 23355799999999875544 46788999999
Q ss_pred EEEEEeCCCHhHH---HHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC--CC----HHHHHHHHHHcC---CcEEEEe
Q 028283 82 ALLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VS----KEEGEQFAKENG---LLFLEAS 149 (211)
Q Consensus 82 ~i~v~d~~~~~s~---~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~----~~~~~~~~~~~~---~~~~~~s 149 (211)
+|||+|+.+.+.. ..+...+..+.+.. ++..+.|+++|+|+..+.. .. .+...+.+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 9999999943333 44444455555544 5899999999999854211 11 112223333444 6799999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Q 028283 150 ARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~~~i~~~~~ 172 (211)
..+ +.+.++|..+++.+.-+.+
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTHC
T ss_pred CcC-cHHHHHHHHHHHHHcccHH
Confidence 999 5999999999998875544
No 219
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.76 E-value=1.2e-17 Score=125.99 Aligned_cols=113 Identities=24% Similarity=0.321 Sum_probs=80.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------------CCCeeeEEEEEEEEE-----CCEEEEEEEEeCCCc
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------------DLTIGVEFGARMVTI-----DGRPIKLQIWDTAGQ 65 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~G~ 65 (211)
+|+++|+.++|||||+++|+........ ....+.++....+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875433210 011123332222222 355688999999999
Q ss_pred chhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028283 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (211)
..+......++..+|++|+|+|+.+..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888889999999999999987654432 233333322 368999999999975
No 220
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.76 E-value=3.9e-18 Score=129.07 Aligned_cols=148 Identities=20% Similarity=0.167 Sum_probs=94.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCCeeeEEEEEEEEECCEEEEEE
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMVTIDGRPIKLQ 58 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 58 (211)
+|+++|+.++|||||+.+|+...... ......+.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999996321100 0001123344444444444556789
Q ss_pred EEeCCCcchhhhchHHHhccccEEEEEEeCCCHhH------HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC--CCC
Q 028283 59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRET------FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR--AVS 130 (211)
Q Consensus 59 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~ 130 (211)
+|||||+..+...+...++.+|++|+|+|+++... .......+...... ...|+++++||+|+.... ...
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence 99999998887777777889999999999988421 11122222222222 136899999999996321 111
Q ss_pred ----HHHHHHHHHHc-----CCcEEEEeCCCCCCHH
Q 028283 131 ----KEEGEQFAKEN-----GLLFLEASARTAQNVE 157 (211)
Q Consensus 131 ----~~~~~~~~~~~-----~~~~~~~s~~~~~~i~ 157 (211)
.+++..+.... +++++++||++|.|++
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 12223334443 3569999999999986
No 221
>PRK12736 elongation factor Tu; Reviewed
Probab=99.75 E-value=5.7e-17 Score=132.62 Aligned_cols=147 Identities=18% Similarity=0.150 Sum_probs=99.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 69 (211)
...++|+++|+.++|||||+++|++..... ......+.+.......+.....++.||||||++++.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 367899999999999999999998632100 011123555555555665556678999999999888
Q ss_pred hchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC---HHHHHHHHHHcC---
Q 028283 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS---KEEGEQFAKENG--- 142 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~--- 142 (211)
......+..+|++++|+|+.+..... ....+..+... ++| +++++||+|+.+..+.. .++...+....+
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~ 165 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc
Confidence 77777788999999999998742211 22333333332 677 67889999986432221 124445555444
Q ss_pred --CcEEEEeCCCCC
Q 028283 143 --LLFLEASARTAQ 154 (211)
Q Consensus 143 --~~~~~~s~~~~~ 154 (211)
++++++|+++|.
T Consensus 166 ~~~~ii~vSa~~g~ 179 (394)
T PRK12736 166 DDIPVIRGSALKAL 179 (394)
T ss_pred CCccEEEeeccccc
Confidence 579999999983
No 222
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.75 E-value=7.5e-17 Score=135.07 Aligned_cols=155 Identities=19% Similarity=0.186 Sum_probs=114.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc------hhhhchHHHh--c
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE------SFRSITRSYY--R 77 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~------~~~~~~~~~~--~ 77 (211)
..+|+++|+||+|||||+|+|++........+.++++.........+.. +++.|.||-= .-.....+++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 4569999999999999999999998877777777777766666666655 7899999921 1122334443 4
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028283 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 157 (211)
.+|++|-|+|+++.+.-..+.- + +.+ -+.|++++.|+.|..+...+. -+.+++.+..++|+++++|++|.|++
T Consensus 81 ~~D~ivnVvDAtnLeRnLyltl--Q-LlE---~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLTL--Q-LLE---LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHHHHHHHH--H-HHH---cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 6799999999998653222222 1 122 289999999999986544332 45667778899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028283 158 EAFIKTAAKILQ 169 (211)
Q Consensus 158 ~~~~~i~~~i~~ 169 (211)
++...+.+....
T Consensus 154 ~l~~~i~~~~~~ 165 (653)
T COG0370 154 ELKRAIIELAES 165 (653)
T ss_pred HHHHHHHHhccc
Confidence 998888764433
No 223
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.74 E-value=6.2e-17 Score=124.01 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=117.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh----c---hHHHhcc
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----I---TRSYYRG 78 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~---~~~~~~~ 78 (211)
...|.+||.|++|||||+++|...+--...+++++.....-++.+++.. ++.+-|.||..+-.. + ...-+..
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHh
Confidence 3467899999999999999999887766666666666666666666644 488999999543222 2 2233466
Q ss_pred ccEEEEEEeCCCH---hHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCC
Q 028283 79 AAGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASART 152 (211)
Q Consensus 79 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ 152 (211)
++.++||+|++.+ ..|+.+..++.++..+.+ .+.|.+||+||+|+++.. .+....++....-+ ++++||+.
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecc
Confidence 8899999999998 888888888777766554 789999999999996322 23345666665544 99999999
Q ss_pred CCCHHHHHHHHHH
Q 028283 153 AQNVEEAFIKTAA 165 (211)
Q Consensus 153 ~~~i~~~~~~i~~ 165 (211)
++++.++++.|.+
T Consensus 352 ~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 352 GEGLEELLNGLRE 364 (366)
T ss_pred ccchHHHHHHHhh
Confidence 9999998877654
No 224
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.74 E-value=1.3e-16 Score=121.72 Aligned_cols=160 Identities=21% Similarity=0.206 Sum_probs=108.3
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcch------------hhhc
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES------------FRSI 71 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~------------~~~~ 71 (211)
.+.++|+|+|.|++|||||.|.+.+.+..+......+++....-+ +.....++.|+||||... ....
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 377899999999999999999999999988777765665555544 333456899999999321 1123
Q ss_pred hHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC-------------CCH---HHHH
Q 028283 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-------------VSK---EEGE 135 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~~---~~~~ 135 (211)
....+..+|.+++|+|+++.....+. ..+..+..+. +.|-+++.||.|....+. +.. +-.+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~ 225 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE 225 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence 44567789999999999973322211 2334444444 899999999999743221 111 1111
Q ss_pred HHHHH---------cCC----cEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 136 QFAKE---------NGL----LFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 136 ~~~~~---------~~~----~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
+|... .+. .+|.+|++.|+|++++-++|+...
T Consensus 226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 12111 112 289999999999999988776543
No 225
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.74 E-value=1.7e-16 Score=123.12 Aligned_cols=115 Identities=19% Similarity=0.204 Sum_probs=81.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCC--------------------CCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------------------LTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 66 (211)
-+|+++|++|+|||||+++|+......... ...+.++......++.....+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 369999999999999999998532111100 011334444445556666789999999999
Q ss_pred hhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028283 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (211)
.+.......++.+|++|+|+|+++... .....++..... .++|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 888777788899999999999987532 222333333322 3799999999999854
No 226
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.73 E-value=2.2e-16 Score=119.59 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=95.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-----------------------eeeEEEEEE-------------EEEC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-----------------------IGVEFGARM-------------VTID 51 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~-------------~~~~ 51 (211)
||+++|+.++|||||+++|..+.+....... .+.+..... -.+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999976554321111 011100000 0011
Q ss_pred CEEEEEEEEeCCCcchhhhchHHHhc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC
Q 028283 52 GRPIKLQIWDTAGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 52 ~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (211)
.....+.++||||++.+.......+. .+|++++|+|+..... .....++..+.. .+.|+++++||+|+......
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence 12346889999999988765555553 7899999999877543 222233333333 27899999999998543221
Q ss_pred C--HHHHHHHHH--------------------------HcCCcEEEEeCCCCCCHHHHHHHHH
Q 028283 130 S--KEEGEQFAK--------------------------ENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 130 ~--~~~~~~~~~--------------------------~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
. .++..++.. ...++++.+|+.+|+|++++...|.
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1 112222222 1124799999999999999876664
No 227
>PRK12735 elongation factor Tu; Reviewed
Probab=99.73 E-value=1.8e-16 Score=129.71 Aligned_cols=148 Identities=17% Similarity=0.159 Sum_probs=98.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCC----------C--C--CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF----------Q--P--VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~----------~--~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 69 (211)
...++|+++|+.++|||||+++|+.... . . ......|.+.......+.....++.|+||||++.+.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 4678999999999999999999986210 0 0 011123455555555555555678999999998887
Q ss_pred hchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCCCCCC---HHHHHHHHHHcC---
Q 028283 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVS---KEEGEQFAKENG--- 142 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~--- 142 (211)
......+..+|++++|+|+.+... ......+..+.. .++|.+ +++||+|+.+..+.. .+++..+....+
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~ 165 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCc
Confidence 777777889999999999987432 122233333332 267865 579999996422211 124455555543
Q ss_pred --CcEEEEeCCCCCC
Q 028283 143 --LLFLEASARTAQN 155 (211)
Q Consensus 143 --~~~~~~s~~~~~~ 155 (211)
++++++|++++.+
T Consensus 166 ~~~~ii~~Sa~~g~n 180 (396)
T PRK12735 166 DDTPIIRGSALKALE 180 (396)
T ss_pred CceeEEecchhcccc
Confidence 6799999999853
No 228
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=2.6e-16 Score=121.43 Aligned_cols=158 Identities=22% Similarity=0.183 Sum_probs=112.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc---------chhhhchHHH
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ---------ESFRSITRSY 75 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~---------~~~~~~~~~~ 75 (211)
..+.|+|.|.||||||||++.+...+.....+|+++....+.++..++ .+++++||||. +.......++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 567899999999999999999999988777777767766666555444 56889999992 1112223334
Q ss_pred hccccEEEEEEeCCCH--hHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCC
Q 028283 76 YRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASART 152 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ 152 (211)
-+-.++++|+||.+.. .+.+.-..++..+.... +.|+++|+||.|..+... .+++.......+.. ...+++..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEEK--LEEIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchhH--HHHHHHHHHhhccccccceeeee
Confidence 4556799999999874 34455556667777666 589999999999875333 34455445554444 77788888
Q ss_pred CCCHHHHHHHHHHHHH
Q 028283 153 AQNVEEAFIKTAAKIL 168 (211)
Q Consensus 153 ~~~i~~~~~~i~~~i~ 168 (211)
+.+++.+-..+.....
T Consensus 321 ~~~~d~~~~~v~~~a~ 336 (346)
T COG1084 321 GCGLDKLREEVRKTAL 336 (346)
T ss_pred hhhHHHHHHHHHHHhh
Confidence 8888877666665543
No 229
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.73 E-value=3.4e-16 Score=116.58 Aligned_cols=159 Identities=13% Similarity=0.121 Sum_probs=94.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeee---EEEEEEEEECCEEEEEEEEeCCCcchhhhchHHH-----hc
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV---EFGARMVTIDGRPIKLQIWDTAGQESFRSITRSY-----YR 77 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~-----~~ 77 (211)
+++|+++|.+|+|||||+|.|++.........+.+. +.....+.... ...+.+|||||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 478999999999999999999986543322222221 11111111111 2368899999975432222222 56
Q ss_pred cccEEEEEEeCCCHhHHHHH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC-----------CCHHHHHHHHH----Hc
Q 028283 78 GAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHRRA-----------VSKEEGEQFAK----EN 141 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~----~~ 141 (211)
.+|++++|.+. . +... ..|+..+... +.|+++|+||+|+..+.. ...++.++.+. ..
T Consensus 80 ~~d~~l~v~~~-~---~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST-R---FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC-C---CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 78888887542 1 2222 2444555443 689999999999842111 01112222222 22
Q ss_pred C---CcEEEEeCC--CCCCHHHHHHHHHHHHHHHHh
Q 028283 142 G---LLFLEASAR--TAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 142 ~---~~~~~~s~~--~~~~i~~~~~~i~~~i~~~~~ 172 (211)
+ .++|.+|+. .+.++.++.+.|+..+.++..
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 2 258999998 568888888888887765543
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=1.5e-16 Score=130.27 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=98.8
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCC------C------C--CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF------Q------P--VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~------~------~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 69 (211)
...++|+++|+.++|||||+++|++... . . ......|.+.....+.++....++.||||||++.|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 4678999999999999999999974310 0 0 001123455555556666666778999999999888
Q ss_pred hchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCCCCCC---HHHHHHHHHHcC---
Q 028283 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVS---KEEGEQFAKENG--- 142 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~--- 142 (211)
.........+|++++|+|+.+..... ....+..+... +.|.+ +++||+|+.+..... .++++.++...+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 77777778899999999998742222 22233333322 67765 689999986532211 134555666554
Q ss_pred --CcEEEEeCCCCC
Q 028283 143 --LLFLEASARTAQ 154 (211)
Q Consensus 143 --~~~~~~s~~~~~ 154 (211)
++++++|++++.
T Consensus 166 ~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 166 DDTPIIRGSALKAL 179 (394)
T ss_pred cCccEEECcccccc
Confidence 689999999875
No 231
>CHL00071 tufA elongation factor Tu
Probab=99.71 E-value=5.5e-16 Score=127.40 Aligned_cols=149 Identities=16% Similarity=0.118 Sum_probs=100.8
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 69 (211)
...++|+++|++++|||||+++|++..... ......|.+.......+.....++.|.||||+..+.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 467999999999999999999999642110 011113455554445555555678899999999888
Q ss_pred hchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC---HHHHHHHHHHcC---
Q 028283 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS---KEEGEQFAKENG--- 142 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~--- 142 (211)
......+..+|++++|+|+..... ......+..+... ++| +++++||+|+.+..+.. .+++..+....+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~ 165 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG 165 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 877888899999999999987432 2222333333332 678 67889999996532211 124444554433
Q ss_pred --CcEEEEeCCCCCCH
Q 028283 143 --LLFLEASARTAQNV 156 (211)
Q Consensus 143 --~~~~~~s~~~~~~i 156 (211)
++++++|+.+|.++
T Consensus 166 ~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 166 DDIPIVSGSALLALEA 181 (409)
T ss_pred CcceEEEcchhhcccc
Confidence 67999999998754
No 232
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.70 E-value=3.1e-16 Score=118.29 Aligned_cols=113 Identities=21% Similarity=0.205 Sum_probs=78.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCC--------------CCeeeEEE--EEEEEEC--------CEEEEEEEEeCC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------------LTIGVEFG--ARMVTID--------GRPIKLQIWDTA 63 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~~~~~~~~--~~~~~~~--------~~~~~~~l~D~~ 63 (211)
+|+++|+.++|||||+.+|+......... ...+.+.. .....+. +....+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 68999999999999999998543211000 01112222 1122232 347789999999
Q ss_pred CcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028283 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (211)
|+..+......++..+|++|+|+|+.+.........+ ..... .+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCCcc
Confidence 9999999999999999999999999986544332222 22222 368999999999985
No 233
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.70 E-value=2.1e-16 Score=122.72 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=79.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCC----------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhc
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPV----------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 71 (211)
+|+++|++++|||||+++|+....... .....+.+.......+.....++.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999974221100 0011233333333333334567899999999888888
Q ss_pred hHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028283 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (211)
+...++.+|++|+|+|+.+..... ....+..+.. .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 999999999999999998753222 2233333332 3789999999999864
No 234
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.5e-15 Score=122.78 Aligned_cols=178 Identities=19% Similarity=0.171 Sum_probs=124.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC-EEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
.++-|.++|+..-|||||+..+-..........-.+..+....+..+. ..-.+.|.||||++.|..+...=..-+|.+|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 457799999999999999999998877666655555555555555542 2336889999999999999888889999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcC---------CcEEEEeCCCCC
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG---------LLFLEASARTAQ 154 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~ 154 (211)
+|++++|.-- .+..+.+......++|++|++||+|.++.. ......-..+++ ..++++||++|+
T Consensus 84 LVVa~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 84 LVVAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 9999998432 122333444444599999999999997432 232332222222 348999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccccccCCCCCeEEeecc
Q 028283 155 NVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGR 191 (211)
Q Consensus 155 ~i~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 191 (211)
|+++++..++-..... +-.........+..+..+-
T Consensus 157 Gi~eLL~~ill~aev~--elka~~~~~a~gtviE~~~ 191 (509)
T COG0532 157 GIDELLELILLLAEVL--ELKANPEGPARGTVIEVKL 191 (509)
T ss_pred CHHHHHHHHHHHHHHH--hhhcCCCCcceEEEEEEEe
Confidence 9999987765443333 3344444555554444433
No 235
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.70 E-value=3.5e-16 Score=121.97 Aligned_cols=143 Identities=17% Similarity=0.260 Sum_probs=92.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh----
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---- 70 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---- 70 (211)
..++|+|+|.+|+|||||+|+|++..+... ..++.+.+.....+..++..+.+.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 368999999999999999999998876543 234445555555666778888999999999432111
Q ss_pred ----------------------chHHHhc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028283 71 ----------------------ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 71 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
.....+. .+|+++|+++.+... +.... ++.+..... ++|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D--~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLD--IEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHH--HHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 0101222 366778888766421 11111 223333332 7899999999998542
Q ss_pred CC--CCHHHHHHHHHHcCCcEEEEeCC
Q 028283 127 RA--VSKEEGEQFAKENGLLFLEASAR 151 (211)
Q Consensus 127 ~~--~~~~~~~~~~~~~~~~~~~~s~~ 151 (211)
.+ .....+.+.+..++++++.....
T Consensus 159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 22 23345666777789998877653
No 236
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.69 E-value=1.4e-16 Score=130.60 Aligned_cols=162 Identities=25% Similarity=0.329 Sum_probs=120.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|..|+||||||-.|....+.+..++-...-.-. ..+.-..+...++|++..+.........++.+|++.+
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 67999999999999999999999998877655432111111 1222223447899998776666666778899999999
Q ss_pred EEeCCCHhHHHHHHH-HHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHH-HHHHHHHcC-C-cEEEEeCCCCCCHHH
Q 028283 85 VYDITRRETFNHLSS-WLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEE-GEQFAKENG-L-LFLEASARTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~s~~~~~~-~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~s~~~~~~i~~ 158 (211)
||+.+++++++.+.. |+..+++... .++|+|+|+||.|..+....+.+. ...+..+.. + ..++|||++-.++.+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e 165 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE 165 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence 999999999999974 7777776663 789999999999997766554443 333333332 2 389999999999999
Q ss_pred HHHHHHHHHH
Q 028283 159 AFIKTAAKIL 168 (211)
Q Consensus 159 ~~~~i~~~i~ 168 (211)
+|....+.+.
T Consensus 166 ~fYyaqKaVi 175 (625)
T KOG1707|consen 166 LFYYAQKAVI 175 (625)
T ss_pred hhhhhhheee
Confidence 9987766654
No 237
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=5.4e-16 Score=120.88 Aligned_cols=115 Identities=21% Similarity=0.236 Sum_probs=77.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-----C-----------eeeEEEEEEEEECCEEEEEEEEeCCCcchhhhc
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----T-----------IGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 71 (211)
+|+++|++|+|||||+++|+.......... + .+.+.......+......+.+|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 589999999999999999985432111000 0 011122222222223456889999999888888
Q ss_pred hHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028283 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
+..++..+|++++|+|+++.........| ..+.. .+.|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC
Confidence 88899999999999999886544333222 33332 37899999999998653
No 238
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.69 E-value=1.3e-15 Score=128.04 Aligned_cols=117 Identities=20% Similarity=0.188 Sum_probs=82.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCeeeEEEEEEEEECCEEEEEEEEeCC
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTA 63 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 63 (211)
+..-+|+++|+.++|||||+++|+....... .....+.++......++.....+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 3556999999999999999999974211000 00111334444444455556779999999
Q ss_pred CcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028283 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (211)
|+..+......+++.+|++|+|+|+.+... .....++..... .+.|+++++||+|+.
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 999888878888999999999999987532 223334333322 489999999999974
No 239
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.68 E-value=8.4e-16 Score=126.16 Aligned_cols=149 Identities=20% Similarity=0.180 Sum_probs=95.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCC-------------------------------CCCeeeEEEEEEEEECCEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH-------------------------------DLTIGVEFGARMVTIDGRPI 55 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 55 (211)
++|+++|+.++|||||+.+|+...-.... ....+.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999743211100 00112333333334444456
Q ss_pred EEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH----
Q 028283 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK---- 131 (211)
Q Consensus 56 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---- 131 (211)
++.||||||++.+.......+..+|++|+|+|+......+. ...+..+.... ..++++++||+|+.+......
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt-~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQT-RRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcccc-HHHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence 78999999999988777778899999999999987532221 12222222222 346888999999964322111
Q ss_pred HHHHHHHHHcC---CcEEEEeCCCCCCHHH
Q 028283 132 EEGEQFAKENG---LLFLEASARTAQNVEE 158 (211)
Q Consensus 132 ~~~~~~~~~~~---~~~~~~s~~~~~~i~~ 158 (211)
++...+....+ ++++++|+++|+|+.+
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 22233334333 4699999999999875
No 240
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.68 E-value=9.7e-16 Score=127.75 Aligned_cols=153 Identities=20% Similarity=0.151 Sum_probs=97.8
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC------------C-------------------CCeeeEEEEEEEEECC
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------------D-------------------LTIGVEFGARMVTIDG 52 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~------------~-------------------~~~~~~~~~~~~~~~~ 52 (211)
...++|+++|+.++|||||+.+|+...-.... . ...|.+.......+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 46799999999999999999999754321100 0 0112333333334444
Q ss_pred EEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH
Q 028283 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 132 (211)
Q Consensus 53 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 132 (211)
...++.||||||++.+.......+..+|++++|+|+.+...-..... +..+.... ..|+++++||+|+.+......+
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~l~~~lg--~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SFIATLLG--IKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HHHHHHhC--CCceEEEEEeeccccchhHHHH
Confidence 45678999999999887666666799999999999987432111111 12222221 2478999999999643221122
Q ss_pred H----HHHHHHHc----CCcEEEEeCCCCCCHHHH
Q 028283 133 E----GEQFAKEN----GLLFLEASARTAQNVEEA 159 (211)
Q Consensus 133 ~----~~~~~~~~----~~~~~~~s~~~~~~i~~~ 159 (211)
+ ...+.... ..+++++|+++|+|+.+.
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 2 22223332 367999999999999765
No 241
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.2e-15 Score=124.40 Aligned_cols=161 Identities=22% Similarity=0.247 Sum_probs=118.4
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCC--C-----------CCCCCeeeEEEEEEEEE---CCEEEEEEEEeCCCcc
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--P-----------VHDLTIGVEFGARMVTI---DGRPIKLQIWDTAGQE 66 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~--~-----------~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~G~~ 66 (211)
.++.=++.|+-+-.-|||||..+|+..... . ....-.|++....+..+ ++..+.++++||||+-
T Consensus 57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv 136 (650)
T KOG0462|consen 57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV 136 (650)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence 456678999999999999999999744321 1 01112255555554433 4566899999999999
Q ss_pred hhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCcE
Q 028283 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKENGLLF 145 (211)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~ 145 (211)
.|.......+..+|++|+|+|++.....+.+..++..+.. +..+|.|+||+|++..+.- -..+..........++
T Consensus 137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~ 212 (650)
T KOG0462|consen 137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV 212 (650)
T ss_pred cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccce
Confidence 9999999999999999999999987665555555555443 8889999999999764431 1233444444556679
Q ss_pred EEEeCCCCCCHHHHHHHHHHHH
Q 028283 146 LEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 146 ~~~s~~~~~~i~~~~~~i~~~i 167 (211)
+.+||++|.|+.++++.|++.+
T Consensus 213 i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 213 IYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred EEEEeccCccHHHHHHHHHhhC
Confidence 9999999999999877777665
No 242
>PLN03126 Elongation factor Tu; Provisional
Probab=99.67 E-value=1.8e-15 Score=125.78 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=99.9
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCC------CC--------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF------QP--------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 69 (211)
...++|+++|+.++|||||+++|+.... .. ......+.+.......++....++.++|+||++.+.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 3578999999999999999999985211 00 111223444444444444445678999999999998
Q ss_pred hchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCC---HHHHHHHHHHc----
Q 028283 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS---KEEGEQFAKEN---- 141 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~---- 141 (211)
......+..+|++++|+|+.+... .....++..+... ++| +++++||+|+.+..+.. .+++..+....
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~ 234 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG 234 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 888888889999999999987533 2223333433333 677 77889999996532211 12344454443
Q ss_pred -CCcEEEEeCCCCCCH
Q 028283 142 -GLLFLEASARTAQNV 156 (211)
Q Consensus 142 -~~~~~~~s~~~~~~i 156 (211)
+++++++|+.++.++
T Consensus 235 ~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 235 DDIPIISGSALLALEA 250 (478)
T ss_pred CcceEEEEEccccccc
Confidence 467999999988543
No 243
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.67 E-value=3e-15 Score=123.90 Aligned_cols=151 Identities=18% Similarity=0.160 Sum_probs=104.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCCeeeEEEEEEEEECCEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMVTIDGRP 54 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (211)
...++|+++|+.++|||||+-+|+...... ......+.+.......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 356889999999999999999887421100 001122455555555666667
Q ss_pred EEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHH-------HHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCC
Q 028283 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-------NHLSSWLEDARQHANPNMS-IMLVGNKCDLAHR 126 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~ 126 (211)
..+.++|+||++.|.......+..+|++|+|+|+.+. .+ ......+..+... ++| ++|++||+|+.+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~~~~ 160 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDATTP 160 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccCCch
Confidence 7899999999999999999999999999999999873 12 2233333332222 664 6888999998621
Q ss_pred C--C----CCHHHHHHHHHHcC-----CcEEEEeCCCCCCHHH
Q 028283 127 R--A----VSKEEGEQFAKENG-----LLFLEASARTAQNVEE 158 (211)
Q Consensus 127 ~--~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~ 158 (211)
. . ...+++..++...+ ++++++|+++|+|+.+
T Consensus 161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 1 0 11345666666655 5699999999999854
No 244
>PRK00049 elongation factor Tu; Reviewed
Probab=99.66 E-value=4.9e-15 Score=121.29 Aligned_cols=148 Identities=17% Similarity=0.164 Sum_probs=98.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCC---C-----------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ---P-----------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 69 (211)
...++|+++|+.++|||||+++|+..... . ......+.+.......+.....++.|.||||+..+.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 36789999999999999999999863110 0 001123555555555565555678899999998887
Q ss_pred hchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCCCCCC---HHHHHHHHHHc----
Q 028283 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVS---KEEGEQFAKEN---- 141 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~---- 141 (211)
......+..+|++++|+|+.+... .....++..+... +.|.+ +++||+|+.+..... ..+...+....
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG 165 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence 777777899999999999987532 2223333333332 68876 589999996422211 12334444433
Q ss_pred -CCcEEEEeCCCCCC
Q 028283 142 -GLLFLEASARTAQN 155 (211)
Q Consensus 142 -~~~~~~~s~~~~~~ 155 (211)
+++++++|++++.+
T Consensus 166 ~~~~iv~iSa~~g~~ 180 (396)
T PRK00049 166 DDTPIIRGSALKALE 180 (396)
T ss_pred cCCcEEEeecccccC
Confidence 36799999998753
No 245
>PRK13351 elongation factor G; Reviewed
Probab=99.66 E-value=1.5e-15 Score=132.37 Aligned_cols=118 Identities=17% Similarity=0.165 Sum_probs=83.3
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCC-------------CCC---CCeeeEEEEEEEEECCEEEEEEEEeCCCcch
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-------------VHD---LTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 67 (211)
+...+|+|+|+.++|||||+++|+...... ... ...+.+.......+......+.+|||||+..
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 456799999999999999999998532110 000 0112222222233333457789999999999
Q ss_pred hhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028283 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (211)
+...+..+++.+|++|+|+|+++.........| ..+.. .++|+++++||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 988899999999999999999987655544333 33332 3799999999999853
No 246
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.66 E-value=3.7e-15 Score=115.58 Aligned_cols=164 Identities=18% Similarity=0.142 Sum_probs=113.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh----chHHH---hccc
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----ITRSY---YRGA 79 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~~~~~---~~~~ 79 (211)
.-|.+||.|++|||||++.+...+--...+++++.....-.+.++. ...+.+-|.||..+-.+ +-..+ +..+
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~-~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDG-GESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecC-CCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 3478999999999999999998876666666556555555555532 33578899999554332 33333 3456
Q ss_pred cEEEEEEeCCCHh---HHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCC
Q 028283 80 AGALLVYDITRRE---TFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTA 153 (211)
Q Consensus 80 d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~ 153 (211)
.++++|+|++..+ ..++......++..+.. .++|.+||+||+|+....+...+....+.+..+.. ++.+|+.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 7999999998643 35556666666666543 68999999999997554333223333444444443 222999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 028283 154 QNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 154 ~~i~~~~~~i~~~i~~~~ 171 (211)
+|++++...+.+.+....
T Consensus 319 ~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 319 EGLDELLRALAELLEETK 336 (369)
T ss_pred cCHHHHHHHHHHHHHHhh
Confidence 999999998888887775
No 247
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.66 E-value=9.1e-15 Score=112.65 Aligned_cols=154 Identities=23% Similarity=0.167 Sum_probs=111.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hchHHHhc
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------SITRSYYR 77 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~ 77 (211)
-..+++++|+|++|||||+++|++.......+++++.+.....+.+++. ++++.|+||.-.-. ....+..+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga--~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGA--QIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCc--eEEEEcCcccccCcccCCCCcceeeeeec
Confidence 3568999999999999999999999888877887788887777777764 57889999843222 24566789
Q ss_pred cccEEEEEEeCCCHhH-HHHHHHHHH-----------------------------------------HHHHh--------
Q 028283 78 GAAGALLVYDITRRET-FNHLSSWLE-----------------------------------------DARQH-------- 107 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~s-~~~~~~~~~-----------------------------------------~~~~~-------- 107 (211)
++|++|+|+|+..... .+-+...+. .+.++
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999986543 333332222 00000
Q ss_pred ----------------cCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 108 ----------------ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 108 ----------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
...-+|.+++.||.|+.. .++...+.+.. ..+++|+..+.|++++.+.|.+.+
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 001489999999999854 34444444434 789999999999999887776655
No 248
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.66 E-value=1.7e-15 Score=114.33 Aligned_cols=161 Identities=19% Similarity=0.238 Sum_probs=109.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEE-EECCEEEEEEEEeCCCcch-------hhhchHHH
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV-TIDGRPIKLQIWDTAGQES-------FRSITRSY 75 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~G~~~-------~~~~~~~~ 75 (211)
..+++|+++|..|+|||||+|+|+.+...+......+.+...... .+++ -.+.|||+||.+. +..+...+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 357899999999999999999999776655544333443333322 2344 3478999999554 77788999
Q ss_pred hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC-------CCCHHHHHH-----------H
Q 028283 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR-------AVSKEEGEQ-----------F 137 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------~~~~~~~~~-----------~ 137 (211)
++..|.++++++..|+.---....|.+-+ ... .+.++++++|.+|...+. ......+++ +
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi-~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVI-ILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHH-Hhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999875333333333333 222 258999999999985431 111111222 2
Q ss_pred HHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Q 028283 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 138 ~~~~~~~~~~~s~~~~~~i~~~~~~i~~~i~~ 169 (211)
+++ -.|++.++.+.+.|++++...+++.+..
T Consensus 193 ~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 193 FQE-VKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred Hhh-cCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 222 2368888899999999999888887753
No 249
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.66 E-value=6.3e-15 Score=100.54 Aligned_cols=106 Identities=21% Similarity=0.163 Sum_probs=70.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchh---------hhchHHHhc
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF---------RSITRSYYR 77 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---------~~~~~~~~~ 77 (211)
+|+|+|.+|+|||||+|+|++.... ....+..+.......+.+++.. +.++||||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999999986432 2222222333333445566655 469999995321 112333458
Q ss_pred cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeC
Q 028283 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK 120 (211)
.+|++++|+|..++.. .....++..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999999877422 22333334442 48999999998
No 250
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.65 E-value=3.9e-15 Score=123.26 Aligned_cols=152 Identities=18% Similarity=0.141 Sum_probs=101.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCC--CC---------------------------CCCCCeeeEEEEEEEEECCEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF--QP---------------------------VHDLTIGVEFGARMVTIDGRP 54 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (211)
...++|+++|+.++|||||+.+|+.... .. ......+.+.......+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4678999999999999999999975211 00 000122455555555566666
Q ss_pred EEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhH---H---HHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCC--
Q 028283 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLSSWLEDARQHANPNMS-IMLVGNKCDLAH-- 125 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~-- 125 (211)
..+.|+||||+.+|.......+..+|++|+|+|+.+... + ......+..+... ++| ++|++||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTVN 161 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccch
Confidence 789999999999999888888999999999999987421 0 1223333333333 666 678999999532
Q ss_pred CCCCC----HHHHHHHHHHc-----CCcEEEEeCCCCCCHHH
Q 028283 126 RRAVS----KEEGEQFAKEN-----GLLFLEASARTAQNVEE 158 (211)
Q Consensus 126 ~~~~~----~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~ 158 (211)
..+.. .+++..+.... +++++++|+.+|+|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11111 22333444433 35799999999999864
No 251
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.65 E-value=4.5e-15 Score=124.90 Aligned_cols=117 Identities=19% Similarity=0.195 Sum_probs=83.1
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCeeeEEEEEEEEECCEEEEEEEEeCC
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTA 63 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 63 (211)
....+|+|+|++++|||||+++|+....... .....+.++......++.....+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 4567999999999999999999863211100 00122445555555566667889999999
Q ss_pred CcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028283 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (211)
|+..+.......+..+|++|+|+|+.+... .....++..... .+.|+++++||+|+.
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 998888777778899999999999987421 223344443332 379999999999974
No 252
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=9e-16 Score=106.94 Aligned_cols=157 Identities=18% Similarity=0.264 Sum_probs=113.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
.+.-|++++|-.++|||||++.|.+.+.....+. ...+...+.+.+ .++..+|.+|+...+..|..++..+|+++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPT---lHPTSE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPT---LHPTSEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCC---cCCChHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 4556899999999999999999998876543331 111122233444 55778999999999999999999999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCCCCCCHHHHHHH------HHHc-----------CCcE
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQF------AKEN-----------GLLF 145 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~-----------~~~~ 145 (211)
+.+|+.|.+.+...+..++.+..... .+.|+++.+||+|.+... +.++.+.. +... .+.+
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev 170 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV 170 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence 99999999988887776666654442 689999999999997533 33333221 1111 1236
Q ss_pred EEEeCCCCCCHHHHHHHHHHHH
Q 028283 146 LEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 146 ~~~s~~~~~~i~~~~~~i~~~i 167 (211)
+.+|...+.+.-+.|.|+.+.+
T Consensus 171 fmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEEEEccCccceeeeehhhhc
Confidence 7788888777777777776543
No 253
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.65 E-value=8.6e-15 Score=109.01 Aligned_cols=159 Identities=17% Similarity=0.163 Sum_probs=96.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh-------h-c---hH
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------S-I---TR 73 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~-~---~~ 73 (211)
++|+++|.+|+|||||+|.|++........ +..+.+.......+++ .++.++||||..... . . ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999886543332 2233333333344444 468899999954321 1 1 11
Q ss_pred HHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCC------CHHHHHHHHHHcCCcE
Q 028283 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAV------SKEEGEQFAKENGLLF 145 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~ 145 (211)
...+..|++|+|+++.+ .+.. -...++.+..... .-.++++++|+.|......+ ...........++..+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 22467899999999887 2221 2233344444332 12578888999987543211 1133455555666666
Q ss_pred EEEeCC-----CCCCHHHHHHHHHHHHHH
Q 028283 146 LEASAR-----TAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 146 ~~~s~~-----~~~~i~~~~~~i~~~i~~ 169 (211)
+..+.+ .+.++.++++.|.+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 555543 456677777766666644
No 254
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.65 E-value=7.4e-15 Score=116.25 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=54.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEE---------------------ECC-EEEEEEEEeCCCc-
Q 028283 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT---------------------IDG-RPIKLQIWDTAGQ- 65 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~l~D~~G~- 65 (211)
|+++|.+++|||||+|+|++........+..+.+....... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998875433333323222222111 122 3367999999997
Q ss_pred ---chhhhchHH---HhccccEEEEEEeCC
Q 028283 66 ---ESFRSITRS---YYRGAAGALLVYDIT 89 (211)
Q Consensus 66 ---~~~~~~~~~---~~~~~d~~i~v~d~~ 89 (211)
+....+... .++++|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 333333333 489999999999997
No 255
>PLN03127 Elongation factor Tu; Provisional
Probab=99.64 E-value=8.9e-15 Score=121.04 Aligned_cols=143 Identities=15% Similarity=0.120 Sum_probs=92.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC------CCCC--------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDK------RFQP--------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 70 (211)
..++|+++|+.++|||||+++|.+. .... ......|.+.......+.....++.|+||||+..+..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~ 139 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVK 139 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHH
Confidence 5789999999999999999999732 1000 0111234555555566666667889999999998877
Q ss_pred chHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCCH---HHHHHHHHHc-----
Q 028283 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVSK---EEGEQFAKEN----- 141 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~----- 141 (211)
.....+..+|++++|+|+.+... ......+..+.. .++| +++++||+|+.+...... ++..++....
T Consensus 140 ~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~ 215 (447)
T PLN03127 140 NMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGD 215 (447)
T ss_pred HHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 77677778999999999987532 122233333333 2788 477899999964322111 1222333322
Q ss_pred CCcEEEEeCC
Q 028283 142 GLLFLEASAR 151 (211)
Q Consensus 142 ~~~~~~~s~~ 151 (211)
.++++++|+.
T Consensus 216 ~vpiip~Sa~ 225 (447)
T PLN03127 216 EIPIIRGSAL 225 (447)
T ss_pred cceEEEeccc
Confidence 3578888876
No 256
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.64 E-value=6.3e-15 Score=127.34 Aligned_cols=152 Identities=20% Similarity=0.147 Sum_probs=96.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC------------CC-------------------CeeeEEEEEEEEECC
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------------DL-------------------TIGVEFGARMVTIDG 52 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~------------~~-------------------~~~~~~~~~~~~~~~ 52 (211)
...++|+++|++++|||||+++|+........ .. ..|.+.......+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 35689999999999999999999864321110 00 012222222333334
Q ss_pred EEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH-
Q 028283 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK- 131 (211)
Q Consensus 53 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~- 131 (211)
...++.|+||||++.+.......+..+|++++|+|+.+....+ ....+..+.... ..|++|++||+|+.+......
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~~~ 178 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLLG--IRHVVLAVNKMDLVDYDQEVFD 178 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHhC--CCeEEEEEEecccccchhHHHH
Confidence 4456889999999888766666788999999999997643211 112222222221 357889999999964222111
Q ss_pred ---HHHHHHHHHcC---CcEEEEeCCCCCCHHH
Q 028283 132 ---EEGEQFAKENG---LLFLEASARTAQNVEE 158 (211)
Q Consensus 132 ---~~~~~~~~~~~---~~~~~~s~~~~~~i~~ 158 (211)
.+...+....+ .+++++|+++|.|+.+
T Consensus 179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 22233334444 3599999999999875
No 257
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.64 E-value=1.6e-15 Score=109.92 Aligned_cols=116 Identities=21% Similarity=0.335 Sum_probs=72.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCcchhhhchHHH---hccccE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSY---YRGAAG 81 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~---~~~~d~ 81 (211)
...|+++|+.|+|||+|+.+|..+...+...+. ..... ..+ +.....+.++|+||+++.+...... ...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~---~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA---YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE---CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce---EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 457999999999999999999998654444433 22221 112 2233457899999999888754444 788999
Q ss_pred EEEEEeCCC-HhHHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCCCC
Q 028283 82 ALLVYDITR-RETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 82 ~i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~ 125 (211)
+|||+|++. +.....+.+++..+.... ....|++|+.||.|+..
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 999999975 444555555444432222 36899999999999864
No 258
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.62 E-value=7.7e-15 Score=121.31 Aligned_cols=162 Identities=16% Similarity=0.132 Sum_probs=102.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCC----eeeEEEEE----------EE-EECC-------------
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDLT----IGVEFGAR----------MV-TIDG------------- 52 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~---~~~~~~----~~~~~~~~----------~~-~~~~------------- 52 (211)
...++|.++|+...|||||+.+|.+.... ++.... .|...... .+ ....
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 56789999999999999999999864321 111110 11111000 00 0000
Q ss_pred ---EEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC
Q 028283 53 ---RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 53 ---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (211)
....+.|+|+||++.+.......+..+|++++|+|+.+..........+..+.... -.|+++++||+|+.+....
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~~~ 189 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEAQA 189 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHHHH
Confidence 02368899999999998887888889999999999987421122223333222221 2468999999999642221
Q ss_pred --CHHHHHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 130 --SKEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 130 --~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
..+++..+... .+.+++++|+++|.|++.+++.|.+.+
T Consensus 190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 11233333322 356899999999999998888777644
No 259
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=3.9e-14 Score=115.71 Aligned_cols=177 Identities=18% Similarity=0.127 Sum_probs=121.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
.++-|-++|+..-|||||+..|-............+..+..-.+.++.. ..+.|.||||+..|..++..-..-+|.+++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 5677899999999999999999987765544444344444444555532 568899999999999999988999999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH-------cC--CcEEEEeCCCCCC
Q 028283 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-------NG--LLFLEASARTAQN 155 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~--~~~~~~s~~~~~~ 155 (211)
|+.++|.-- .+..+.+......++|++|.+||+|.++.. .+...+-... +| +.++++||++|.|
T Consensus 231 VVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 231 VVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 999988432 233444555555699999999999987533 3433333333 33 3489999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccCCCCCeEEeecc
Q 028283 156 VEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGR 191 (211)
Q Consensus 156 i~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 191 (211)
++.+.+.++-.. +.+. --+.....-.|+.+..+.
T Consensus 304 l~~L~eaill~A-e~md-LkA~p~g~~eg~VIES~v 337 (683)
T KOG1145|consen 304 LDLLEEAILLLA-EVMD-LKADPKGPAEGWVIESSV 337 (683)
T ss_pred hHHHHHHHHHHH-HHhh-cccCCCCCceEEEEEeee
Confidence 999877655322 1111 122244444555544443
No 260
>PRK12739 elongation factor G; Reviewed
Probab=99.61 E-value=2.6e-14 Score=124.60 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=80.8
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC------------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 65 (211)
+...+|+++|+.++|||||+++|+....... .....+.+.....+.++ ..++.+|||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCCH
Confidence 4567999999999999999999975311100 11122333333333343 457899999999
Q ss_pred chhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028283 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (211)
..+...+...+..+|++|+|+|+.+....... ..+..+.. .+.|.++++||+|+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 88888899999999999999999875432222 23333332 3789999999999863
No 261
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.59 E-value=3.4e-14 Score=123.86 Aligned_cols=117 Identities=19% Similarity=0.120 Sum_probs=81.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-----CCC-----------CCeeeEEEEEEEEECCEEEEEEEEeCCCcchh
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----VHD-----------LTIGVEFGARMVTIDGRPIKLQIWDTAGQESF 68 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 68 (211)
..-+|+|+|++++|||||+++|+...... ... ...+.+.......+.....++.+|||||+..+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 45599999999999999999997432111 000 01133333333333334567899999999988
Q ss_pred hhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028283 69 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (211)
...+...++.+|++|+|+|+.+....... .++..+.. .+.|+++++||+|+..
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 88888999999999999999885443333 23333332 3789999999999975
No 262
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.4e-14 Score=117.06 Aligned_cols=164 Identities=24% Similarity=0.246 Sum_probs=105.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEE--EEECCEEEEEEEEeCCCcchh-hh--------chH
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM--VTIDGRPIKLQIWDTAGQESF-RS--------ITR 73 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~D~~G~~~~-~~--------~~~ 73 (211)
..++|+++|+||+|||||+|.|.........+.+ |.+..... ++++| +.+.|.||+|..+. .. ...
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-GTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC-CcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHH
Confidence 4589999999999999999999988776544433 44444443 45555 55778999996541 11 234
Q ss_pred HHhccccEEEEEEeCC--CHhHHHHHHHHHHHHHHhcC------CCCeEEEEEeCCCCCCC-CCCCHHHHHHHHHH---c
Q 028283 74 SYYRGAAGALLVYDIT--RRETFNHLSSWLEDARQHAN------PNMSIMLVGNKCDLAHR-RAVSKEEGEQFAKE---N 141 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~------~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~---~ 141 (211)
..+..+|++++|+|+. +-++...+...++....... .+.|++++.||.|+... .++... ...+... -
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~ 422 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGRS 422 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccCc
Confidence 4578899999999993 33333333333333322111 24889999999999654 222211 1111111 1
Q ss_pred CCc-EEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028283 142 GLL-FLEASARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 142 ~~~-~~~~s~~~~~~i~~~~~~i~~~i~~~~~ 172 (211)
..+ ..++|+++++++..+.+.+...+.....
T Consensus 423 ~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 423 VFPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred ccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 233 4559999999999998888877665544
No 263
>PRK09866 hypothetical protein; Provisional
Probab=99.57 E-value=3.4e-13 Score=113.29 Aligned_cols=109 Identities=16% Similarity=0.154 Sum_probs=72.7
Q ss_pred EEEEEEeCCCcch-----hhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC
Q 028283 55 IKLQIWDTAGQES-----FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 55 ~~~~l~D~~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (211)
.++.|+||||... ........+..+|+++||+|.....+... ....+.+.... .+.|+++|+||+|+......
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccc
Confidence 3578999999643 22234557899999999999987433222 22333443332 13699999999998643333
Q ss_pred CHHHHHHHHH----HcC---CcEEEEeCCCCCCHHHHHHHHHH
Q 028283 130 SKEEGEQFAK----ENG---LLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 130 ~~~~~~~~~~----~~~---~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
..+....+.. ... ..++++||+.|.|++++++.|.+
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 3445555432 212 35999999999999999988876
No 264
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=1.1e-13 Score=111.57 Aligned_cols=160 Identities=23% Similarity=0.237 Sum_probs=115.6
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCC-------------CCCCCeeeEEEEEEEE--E---CCEEEEEEEEeCCC
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-------------VHDLTIGVEFGARMVT--I---DGRPIKLQIWDTAG 64 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-------------~~~~~~~~~~~~~~~~--~---~~~~~~~~l~D~~G 64 (211)
.++.-+..++-+-.-|||||..||+.....- ....-.|+++....+. + ++..+.++++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 3455577889999999999999997432110 0111224444433332 2 56789999999999
Q ss_pred cchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCc
Q 028283 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 144 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 144 (211)
+-.|.-.....+..+.++++|+|+++....+.+...+..+.. +.-++.|+||+||+..... .-..++..-.+++
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adpe--rvk~eIe~~iGid 159 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADPE--RVKQEIEDIIGID 159 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCHH--HHHHHHHHHhCCC
Confidence 999988888888999999999999998766777776666654 7889999999999864321 2222233335553
Q ss_pred ---EEEEeCCCCCCHHHHHHHHHHHHH
Q 028283 145 ---FLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 145 ---~~~~s~~~~~~i~~~~~~i~~~i~ 168 (211)
.+.+||++|.|++++++.|++++.
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCC
Confidence 899999999999999888887763
No 265
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.56 E-value=2.2e-14 Score=95.54 Aligned_cols=136 Identities=21% Similarity=0.188 Sum_probs=96.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC----cchhhhchHHHhccccEEE
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----QESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----~~~~~~~~~~~~~~~d~~i 83 (211)
|++++|+.|+|||||.+.|.+... -+..+..+ +++... .+|||| +..+..........+|.++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAv-------e~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAV-------EFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh--hhccccee-------eccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999987643 23333222 222221 469999 3333334555678899999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHH
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~ 162 (211)
+|-+++++++.- -..+.... ..|+|=+++|.|+++.. ..+..+.+..+-|. ++|.+|+.++.|+++++..
T Consensus 70 ~v~~and~~s~f-----~p~f~~~~--~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESRF-----PPGFLDIG--VKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCccccC-----Cccccccc--ccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 999999986521 11222222 56689999999998633 34667788888887 5999999999999999887
Q ss_pred HHH
Q 028283 163 TAA 165 (211)
Q Consensus 163 i~~ 165 (211)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 754
No 266
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=4.2e-14 Score=112.37 Aligned_cols=156 Identities=20% Similarity=0.176 Sum_probs=106.8
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCCeeeEEEEEEEEECC
Q 028283 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMVTIDG 52 (211)
Q Consensus 2 ~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 52 (211)
.....++++++|+..+|||||+=+|+...-.. ....-.|.++......+..
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 34578999999999999999999886331100 0111226777777777777
Q ss_pred EEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhH---H---HHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028283 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 53 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
....+.|.|+||+..|-.....-+.++|+.|+|+|+.+.+. + .+.+.. ..+.+... -..+||++||+|..+-
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH-~~La~tlG-i~~lIVavNKMD~v~w 160 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH-AFLARTLG-IKQLIVAVNKMDLVSW 160 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH-HHHHHhcC-CceEEEEEEccccccc
Confidence 77889999999999988888888899999999999988631 1 112222 22222221 3557888999999864
Q ss_pred CCCCHHHHH----HHHHHcC-----CcEEEEeCCCCCCHHHH
Q 028283 127 RAVSKEEGE----QFAKENG-----LLFLEASARTAQNVEEA 159 (211)
Q Consensus 127 ~~~~~~~~~----~~~~~~~-----~~~~~~s~~~~~~i~~~ 159 (211)
.+...++.. .+.+..+ ++|+++|+..|+|+.+.
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 333333332 2333333 56999999999998664
No 267
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.56 E-value=3.3e-13 Score=109.98 Aligned_cols=83 Identities=22% Similarity=0.247 Sum_probs=56.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEE---------------------EC-CEEEEEEEEeCCC
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT---------------------ID-GRPIKLQIWDTAG 64 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~l~D~~G 64 (211)
++|+++|.|++|||||+|+|++........+..+.+....... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999998876543333333333332221 11 1236789999999
Q ss_pred cc----hhhhchHHH---hccccEEEEEEeCC
Q 028283 65 QE----SFRSITRSY---YRGAAGALLVYDIT 89 (211)
Q Consensus 65 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 89 (211)
.. ....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 223333344 89999999999996
No 268
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.55 E-value=4.3e-14 Score=114.37 Aligned_cols=166 Identities=14% Similarity=0.094 Sum_probs=117.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcch---------hhhchHH
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---------FRSITRS 74 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---------~~~~~~~ 74 (211)
+..-.++|+|.|++|||||+|.+..........++++......+ ++....+|++.||||.-. ....+.+
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH--~dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGH--LDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhh--hhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 35568999999999999999999877766655555454444433 455556789999999321 1112344
Q ss_pred HhccccEEEEEEeCCCH--hHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH---HHHHHHHcCCcEEEEe
Q 028283 75 YYRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE---GEQFAKENGLLFLEAS 149 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~s 149 (211)
..+--.+|+|++|++.. .+...--.++..+..... +.|+|+|+||+|+.....++.+. .......-+++++.+|
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 44555689999999884 344444456666666664 99999999999997776666443 3334444568999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Q 028283 150 ARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~~~i~~~~~ 172 (211)
+.+.+|+.++-...++.++...-
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa~RV 345 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLAARV 345 (620)
T ss_pred ccchhceeeHHHHHHHHHHHHHH
Confidence 99999999988887776665543
No 269
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.52 E-value=5.3e-13 Score=106.22 Aligned_cols=119 Identities=21% Similarity=0.263 Sum_probs=83.6
Q ss_pred EEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCH----------hHHHHHHHHHHHHHHhc-CCCCeEEEEEeCC
Q 028283 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLSSWLEDARQHA-NPNMSIMLVGNKC 121 (211)
Q Consensus 53 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 121 (211)
..+.+.+||++|+...+..|..++.+++++|||+|+++. ..+......+..+.... -.++|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 456789999999999999999999999999999999874 22222222333332222 1589999999999
Q ss_pred CCCCC--------------C--CCCHHHHHHHHHH----------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028283 122 DLAHR--------------R--AVSKEEGEQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 122 D~~~~--------------~--~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~i~~~i~~~~ 171 (211)
|+..+ . .-..+.+..+... ..+....++|.+..++..+|+.+.+.++...
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 96221 1 2234444443332 2234677899999999999999988887654
No 270
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.52 E-value=9.2e-13 Score=101.69 Aligned_cols=160 Identities=16% Similarity=0.292 Sum_probs=115.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE--CCEEEEEEEEeCCCcchhhhchHHHhcccc---
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI--DGRPIKLQIWDTAGQESFRSITRSYYRGAA--- 80 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d--- 80 (211)
--+|+|+|..++||||||.+|-+.. ...+..+..+....+.- .+...++.+|-.-|+.-+..+....+....
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 3579999999999999999998765 34444455554443322 333457899999998877777776665553
Q ss_pred -EEEEEEeCCCHhH-HHHHHHHHHHHHHhcC-------------------------------------------------
Q 028283 81 -GALLVYDITRRET-FNHLSSWLEDARQHAN------------------------------------------------- 109 (211)
Q Consensus 81 -~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~------------------------------------------------- 109 (211)
.+|++.|+++|.+ ++.+..|..-+.++..
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 7999999999954 3556666543222111
Q ss_pred ------------CCCeEEEEEeCCCCCC----CCCCC-------HHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028283 110 ------------PNMSIMLVGNKCDLAH----RRAVS-------KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 110 ------------~~~p~ivv~nK~D~~~----~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
-++|++||.+|+|... +.+.. ...+++||.+++..++.+|.+...|++-+..+|.++
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 0799999999999831 22222 133678999999999999999999999998888887
Q ss_pred HH
Q 028283 167 IL 168 (211)
Q Consensus 167 i~ 168 (211)
++
T Consensus 289 ~y 290 (473)
T KOG3905|consen 289 SY 290 (473)
T ss_pred hc
Confidence 65
No 271
>PRK00007 elongation factor G; Reviewed
Probab=99.51 E-value=3.7e-13 Score=117.38 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=79.8
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC------------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 65 (211)
+...+|+++|++++|||||+++|+....... .....+.+.....+.+. ..++.++||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCCc
Confidence 4567999999999999999999974211100 11112233333333343 457899999999
Q ss_pred chhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028283 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (211)
..+.......+..+|++|+|+|+......+.... +..+.. .+.|.++++||+|+..
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~-~~~~~~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETV-WRQADK---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHH-HHHHHH---cCCCEEEEEECCCCCC
Confidence 8887778888899999999999887543333222 233333 3789999999999875
No 272
>PRK12740 elongation factor G; Reviewed
Probab=99.50 E-value=5e-13 Score=116.52 Aligned_cols=109 Identities=21% Similarity=0.234 Sum_probs=74.2
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCC-----C-----------CCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHH
Q 028283 12 IGDTGVGKSCLLLQFTDKRFQPVH-----D-----------LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSY 75 (211)
Q Consensus 12 ~G~~~~GKSsli~~l~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 75 (211)
+|+.++|||||+++|+........ . ...+.+.......+......+.+|||||+..+...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999643221000 0 011222333223333344678999999998888888889
Q ss_pred hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028283 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (211)
+..+|++|+|+|+++.........| ..+.. .+.|+++++||+|+.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 9999999999999886554433333 33322 378999999999985
No 273
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.50 E-value=3.2e-13 Score=118.15 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=80.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCC---------------CCCC---CCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR---------------FQPV---HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 65 (211)
+...+|+++|+.++|||||+++|+... +.+. ...+.........+.+++...++.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 456799999999999999999997531 1110 0112112222222345667788999999999
Q ss_pred chhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028283 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (211)
..+.......+..+|++|+|+|+.+....+....| .... ..+.|.++++||+|..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL---KENVKPVLFINKVDRL 151 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH---HcCCCEEEEEEChhcc
Confidence 98888888999999999999999874332222222 2222 2367889999999985
No 274
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.48 E-value=1.1e-12 Score=100.67 Aligned_cols=120 Identities=20% Similarity=0.238 Sum_probs=73.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh--h--------ch
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--S--------IT 72 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--~--------~~ 72 (211)
+..++|+|+|.+|+|||||+|+|++........ ...+..........++ ..+.+|||||..... . ..
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 467999999999999999999999887543322 2223333333334444 457899999965431 0 12
Q ss_pred HHHhc--cccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCC
Q 028283 73 RSYYR--GAAGALLVYDITRRE-TFNHLSSWLEDARQHANP--NMSIMLVGNKCDLAHR 126 (211)
Q Consensus 73 ~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~ 126 (211)
..++. ..|++++|..++... ... -...++.+...... -.++++|.||+|...+
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 22332 577888887665432 111 12333344333221 2569999999998543
No 275
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.47 E-value=2.3e-12 Score=100.61 Aligned_cols=126 Identities=16% Similarity=0.111 Sum_probs=73.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhc---hHHHh----
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI---TRSYY---- 76 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~---~~~~~---- 76 (211)
..++|+++|.+|+||||++|+|++........ .+.+.+........++ ..+.+|||||....... ....+
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 67899999999999999999999876532211 2222222222233444 56899999996543221 11112
Q ss_pred --ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCCHH
Q 028283 77 --RGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKE 132 (211)
Q Consensus 77 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~ 132 (211)
...|+++||..++.......-...+..+..... .-.+.+|++|+.|...+...+.+
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e 174 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYN 174 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHH
Confidence 258899999765432111111223333333321 23568999999997644444433
No 276
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=4.1e-13 Score=97.73 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=78.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhc---cccEE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR---GAAGA 82 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~---~~d~~ 82 (211)
.-.|+++|+.++|||+|+-+|..+.....+.+. +-....+.+... .+.++|.||+.+.+.....+++ .+-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi---epn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI---EPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeeee---ccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 357999999999999999998877543333221 111112222222 3789999999999987777776 68899
Q ss_pred EEEEeCCC-HhHHHHHHHHHHHHHHhc---CCCCeEEEEEeCCCCCC
Q 028283 83 LLVYDITR-RETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 83 i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~ 125 (211)
+||+|... +.....+..++..+.... ..+.|++|+.||.|+..
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 99999765 333445555555443333 46789999999999843
No 277
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.46 E-value=1.1e-12 Score=98.68 Aligned_cols=160 Identities=19% Similarity=0.178 Sum_probs=92.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCC--CCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hch----H
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------SIT----R 73 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~----~ 73 (211)
++|+|+|.+|+||||++|.+++....... ..+++.........+++.. +.++||||..... ... .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999988875543 2333444555555677744 6799999943211 111 1
Q ss_pred HHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCCCCCC-------HHHHHHHHHHcCCc
Q 028283 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVS-------KEEGEQFAKENGLL 144 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 144 (211)
...+..|++++|+.+.. -+... ...+..+..... .-..++|+.+..|...+..+. ......+....+..
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCc-chHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 22457899999999883 22111 222233333222 124578888888765443311 11244566667878
Q ss_pred EEEEeCC------CCCCHHHHHHHHHHHHHHH
Q 028283 145 FLEASAR------TAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 145 ~~~~s~~------~~~~i~~~~~~i~~~i~~~ 170 (211)
+...+.+ ....+.++++.|.+.+.+.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 8888776 2345677777766666554
No 278
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.46 E-value=5.9e-12 Score=112.35 Aligned_cols=145 Identities=26% Similarity=0.263 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEE----------------EEEEEEeCCCcchhhhchHHHhcccc
Q 028283 17 VGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP----------------IKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 17 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
++||||+.++.+...........+..+....+..+... -.+.||||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 35999999999877655444443433333333333110 12789999999999888888888999
Q ss_pred EEEEEEeCCC---HhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC----------------HHHHH----HH
Q 028283 81 GALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS----------------KEEGE----QF 137 (211)
Q Consensus 81 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----------------~~~~~----~~ 137 (211)
++++|+|+++ +.++..+. .+.. .+.|+++++||+|+....... ..+.. ..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999987 33433332 2222 278999999999985321100 01110 00
Q ss_pred ---HHH---------------cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028283 138 ---AKE---------------NGLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 138 ---~~~---------------~~~~~~~~s~~~~~~i~~~~~~i~~~i~ 168 (211)
..+ ..++++++||++|+|+++++..|.....
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 111 1346899999999999999987765443
No 279
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.45 E-value=3.3e-13 Score=101.87 Aligned_cols=168 Identities=15% Similarity=0.168 Sum_probs=96.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-------e-----eeEEEEEE-EE---------------------
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-------I-----GVEFGARM-VT--------------------- 49 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------~-----~~~~~~~~-~~--------------------- 49 (211)
+.++-|+|+|..|+|||||++||..+-.....++. + +....++. +.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 45778999999999999999999755332222111 0 00000000 00
Q ss_pred --------------ECCEEEEEEEEeCCCcchhhh------chHHHhc--cccEEEEEEeCCCHhH-HHHHHHHHHHHHH
Q 028283 50 --------------IDGRPIKLQIWDTAGQESFRS------ITRSYYR--GAAGALLVYDITRRET-FNHLSSWLEDARQ 106 (211)
Q Consensus 50 --------------~~~~~~~~~l~D~~G~~~~~~------~~~~~~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~ 106 (211)
-....+.+.++||||+.+... .+...+. ...++++|+|.....+ ...+..++.....
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 012235688999999764322 2222222 2337788888643211 1223333333334
Q ss_pred hcCCCCeEEEEEeCCCCCCCCCCCH--HHHHHH---HH---------------------HcCCcEEEEeCCCCCCHHHHH
Q 028283 107 HANPNMSIMLVGNKCDLAHRRAVSK--EEGEQF---AK---------------------ENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 107 ~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~---~~---------------------~~~~~~~~~s~~~~~~i~~~~ 160 (211)
..+.+.|+|++.||.|+....-... .+.+.| .+ ..++..+-+|+.+|.|++++|
T Consensus 177 lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~ 256 (366)
T KOG1532|consen 177 LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFF 256 (366)
T ss_pred HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHH
Confidence 4446999999999999965321100 000000 00 034567899999999999999
Q ss_pred HHHHHHHHHHH
Q 028283 161 IKTAAKILQNI 171 (211)
Q Consensus 161 ~~i~~~i~~~~ 171 (211)
..+.+.+-+..
T Consensus 257 ~av~~~vdEy~ 267 (366)
T KOG1532|consen 257 TAVDESVDEYE 267 (366)
T ss_pred HHHHHHHHHHH
Confidence 98887765443
No 280
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.44 E-value=3.9e-12 Score=102.08 Aligned_cols=118 Identities=20% Similarity=0.260 Sum_probs=81.9
Q ss_pred EEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHh----------HHHHHHHHHHHHHHhc-CCCCeEEEEEeCCC
Q 028283 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLSSWLEDARQHA-NPNMSIMLVGNKCD 122 (211)
Q Consensus 54 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 122 (211)
...+.+||.+|+...+..|..++.+++++|||+|+++.. .+......+..+.... -.+.|+++++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 355789999999999999999999999999999999742 2222223333332221 25899999999999
Q ss_pred CCCC--------------C-CCCHHHHHHHHHH-----c------CCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028283 123 LAHR--------------R-AVSKEEGEQFAKE-----N------GLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 123 ~~~~--------------~-~~~~~~~~~~~~~-----~------~~~~~~~s~~~~~~i~~~~~~i~~~i~~~~ 171 (211)
+... . ....+.+..+... . .+..+.++|.+..++..+|+.+...+..+.
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 7321 1 1233444433322 1 234678889999999999999888887765
No 281
>PTZ00258 GTP-binding protein; Provisional
Probab=99.43 E-value=4.7e-12 Score=102.39 Aligned_cols=86 Identities=21% Similarity=0.184 Sum_probs=61.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCcch-
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES- 67 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~- 67 (211)
...++|+++|.|++|||||+|+|.+........+.++.+.....+.+.+. ..++.++|+||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 35689999999999999999999887765555555555555555544432 23589999999432
Q ss_pred ------hhhchHHHhccccEEEEEEeCC
Q 028283 68 ------FRSITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 68 ------~~~~~~~~~~~~d~~i~v~d~~ 89 (211)
........++.+|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1123344568899999999973
No 282
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.41 E-value=1.1e-11 Score=92.21 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=64.8
Q ss_pred EEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 028283 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 134 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 134 (211)
....++++.|.......... -+|.+|.|+|+.+...... .+...+ ...-++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 45667888884322222221 2678999999987554221 111111 122389999999975322233444
Q ss_pred HHHHHH--cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 135 EQFAKE--NGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 135 ~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
.+..+. .+.+++++|+++|+|++++|++|.+.+
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444444 457899999999999999999998765
No 283
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.41 E-value=9.2e-13 Score=101.16 Aligned_cols=96 Identities=22% Similarity=0.285 Sum_probs=77.1
Q ss_pred chhhhchHHHhccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCc
Q 028283 66 ESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 144 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 144 (211)
+++..+...++.++|++++|+|+.++. ++..+..|+..+.. .+.|+++|+||+|+.+......+....+ ...+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 566777888999999999999999877 89999999876654 3899999999999965444333334444 457889
Q ss_pred EEEEeCCCCCCHHHHHHHHHH
Q 028283 145 FLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 145 ~~~~s~~~~~~i~~~~~~i~~ 165 (211)
++++|++++.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999987753
No 284
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.40 E-value=1.1e-11 Score=102.67 Aligned_cols=161 Identities=16% Similarity=0.286 Sum_probs=111.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC--CEEEEEEEEeCCCcchhhhchHHHhcccc----
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--GRPIKLQIWDTAGQESFRSITRSYYRGAA---- 80 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~~d---- 80 (211)
-.|+|+|..++|||||+.+|.+.. ...++.+.+|....+.-+ +...++.+|...|...+..+....+....
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 479999999999999999987543 334455666655443222 23357899999987777777766665433
Q ss_pred EEEEEEeCCCHhHH-HHHHHHHHHHHH-------------------------hcC-------------------------
Q 028283 81 GALLVYDITRRETF-NHLSSWLEDARQ-------------------------HAN------------------------- 109 (211)
Q Consensus 81 ~~i~v~d~~~~~s~-~~~~~~~~~~~~-------------------------~~~------------------------- 109 (211)
++|+|+|.+.|..+ +.+..|+..++. +.+
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 89999999998764 444444431111 100
Q ss_pred ------------CCCeEEEEEeCCCCCC----CCCCC-------HHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028283 110 ------------PNMSIMLVGNKCDLAH----RRAVS-------KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 110 ------------~~~p~ivv~nK~D~~~----~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
-++|++||.+|+|... ..... ..-++.+|..+|+.++.+|++...+++-++.+|.+.
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~ 262 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR 262 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence 0489999999999732 11111 123577888899999999999999999888888887
Q ss_pred HHHH
Q 028283 167 ILQN 170 (211)
Q Consensus 167 i~~~ 170 (211)
++..
T Consensus 263 l~~~ 266 (472)
T PF05783_consen 263 LYGF 266 (472)
T ss_pred hccC
Confidence 7543
No 285
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.39 E-value=5.7e-12 Score=101.52 Aligned_cols=158 Identities=19% Similarity=0.193 Sum_probs=108.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCC--C------------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhc
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ--P------------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 71 (211)
.-+|+++-+..-|||||+..|+.+... . ....-.|+++-.+...+.....+++++||||+..|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 357999999999999999999865321 1 11122366666665556666688999999999999999
Q ss_pred hHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC-CHHHHHHHHHH-------cCC
Q 028283 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKE-------NGL 143 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~-------~~~ 143 (211)
.+..+.-+|++++++|+.+.. ..+.+..+... ...+.+.|||+||+|.+..+.. -.++...+... ..+
T Consensus 85 VERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKA---l~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKA---LALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccCC-CCchhhhHHHH---HHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 999999999999999998742 12223332322 2348888999999999765431 22333333333 567
Q ss_pred cEEEEeCCCC----------CCHHHHHHHHHHHH
Q 028283 144 LFLEASARTA----------QNVEEAFIKTAAKI 167 (211)
Q Consensus 144 ~~~~~s~~~~----------~~i~~~~~~i~~~i 167 (211)
|++..|++.| .++..+|+.|++.+
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 8888998765 24555555555544
No 286
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.39 E-value=1.3e-11 Score=108.37 Aligned_cols=117 Identities=19% Similarity=0.169 Sum_probs=78.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC--CC------------CeeeEEEE--EEE--EECCEEEEEEEEeCCCc
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--DL------------TIGVEFGA--RMV--TIDGRPIKLQIWDTAGQ 65 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~--~~------------~~~~~~~~--~~~--~~~~~~~~~~l~D~~G~ 65 (211)
+..-+|+++|+.++|||||+.+|+........ .. ..+.+... ..+ ..++....+.|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 45568999999999999999999853221100 00 00111111 112 23445678999999999
Q ss_pred chhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028283 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (211)
..+.......+..+|++|+|+|+...........| ...... +.|.++++||+|..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHHc---CCCeEEEEECchhh
Confidence 99888888899999999999999875433322233 222222 56889999999975
No 287
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.37 E-value=3.4e-12 Score=113.38 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=81.1
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC--C---------C---CeeeEEE--EEEEEE--------------CC
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--D---------L---TIGVEFG--ARMVTI--------------DG 52 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~--~---------~---~~~~~~~--~~~~~~--------------~~ 52 (211)
.+..-+|+|+|+.++|||||+++|+........ . . ..+.++. ...+.+ .+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 356679999999999999999999854321000 0 0 0122222 112222 12
Q ss_pred EEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028283 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 53 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (211)
....++++||||+..|.......++.+|++|+|+|+.+.........|. .+. ..++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHH---HCCCCEEEEEECCccc
Confidence 3567899999999999998899999999999999998864433333332 222 2389999999999986
No 288
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.37 E-value=1e-11 Score=96.99 Aligned_cols=153 Identities=21% Similarity=0.183 Sum_probs=106.4
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCC-----------------CC--------------CCCCeeeEEEEEEEEEC
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-----------------PV--------------HDLTIGVEFGARMVTID 51 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~-----------------~~--------------~~~~~~~~~~~~~~~~~ 51 (211)
-...++++-+|+..-||||||=||+..... .. ...-.|+++......+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 345789999999999999999998643210 00 01122666666666666
Q ss_pred CEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH
Q 028283 52 GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 131 (211)
Q Consensus 52 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 131 (211)
-.+..+.+-||||++.|..+.-.-...+|++|+++|+...- +++.+. ...+..... -..+++.+||+||.+..+...
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrR-Hs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRR-HSFIASLLG-IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHH-HHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence 67778999999999999998887788899999999996532 222222 222222221 345788899999988665444
Q ss_pred HH----HHHHHHHcCCc---EEEEeCCCCCCHHH
Q 028283 132 EE----GEQFAKENGLL---FLEASARTAQNVEE 158 (211)
Q Consensus 132 ~~----~~~~~~~~~~~---~~~~s~~~~~~i~~ 158 (211)
++ ...|+...++. ++++||+.|+|+-.
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 44 34567777664 89999999998743
No 289
>PRK13768 GTPase; Provisional
Probab=99.36 E-value=9.8e-12 Score=95.97 Aligned_cols=110 Identities=18% Similarity=0.182 Sum_probs=68.9
Q ss_pred EEEEEeCCCcchhh---hchHHHhcc-----ccEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028283 56 KLQIWDTAGQESFR---SITRSYYRG-----AAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 56 ~~~l~D~~G~~~~~---~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
.+.+||+||+.+.. ..+..+++. .+++++|+|+.......... .++..+......+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 58899999976643 333333322 78999999997643322221 2222211111248999999999998654
Q ss_pred CCCCHHHHHH----------------------------HHHHcC--CcEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 127 RAVSKEEGEQ----------------------------FAKENG--LLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 127 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
.+. +.... ..+..+ .+++++|++++.|++++.++|.+.+
T Consensus 178 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 178 EEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 321 11111 111223 4789999999999999999887766
No 290
>PTZ00416 elongation factor 2; Provisional
Probab=99.36 E-value=5.5e-12 Score=111.88 Aligned_cols=117 Identities=23% Similarity=0.229 Sum_probs=79.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC--CC------------CCeeeEEE--EEEEEEC--------CEEEEEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--HD------------LTIGVEFG--ARMVTID--------GRPIKLQI 59 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~--~~------------~~~~~~~~--~~~~~~~--------~~~~~~~l 59 (211)
+..-+|+++|+.++|||||+++|+....... .. ...+.++. ...+.++ +....+.|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4556999999999999999999986322110 00 00112222 1222232 12567899
Q ss_pred EeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028283 60 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 60 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (211)
+||||+..+.......++.+|++|+|+|+.+....... ..+..+.. .+.|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH---cCCCEEEEEEChhhh
Confidence 99999999888889999999999999999885433322 23333332 378999999999985
No 291
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.5e-12 Score=99.15 Aligned_cols=163 Identities=18% Similarity=0.132 Sum_probs=111.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCCeee-------------------EEEEEEEE--E---CCEEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---HDLTIGV-------------------EFGARMVT--I---DGRPIKL 57 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~-------------------~~~~~~~~--~---~~~~~~~ 57 (211)
..++|.++|+..-|||||..+|.+-..... .....++ .+...... . ...-.++
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 478999999999999999999976432111 1110000 00000000 0 0123478
Q ss_pred EEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC--CCCHHHHH
Q 028283 58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR--AVSKEEGE 135 (211)
Q Consensus 58 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~ 135 (211)
.|+|.||++-..+...+-..-.|++++|++++.+....+.++.+-.+.... -..++|+-||.|+...+ ..+.+++.
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qIk 166 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQIK 166 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHHH
Confidence 999999999888866666677999999999998655444555444444443 45688999999996532 23445666
Q ss_pred HHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Q 028283 136 QFAKE---NGLLFLEASARTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 136 ~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~i~~ 169 (211)
+|.+. .+++++++||..+.|++.+++.|.+.+..
T Consensus 167 ~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 167 EFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred HHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 77664 57789999999999999999888887743
No 292
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.35 E-value=2.5e-11 Score=100.14 Aligned_cols=159 Identities=21% Similarity=0.297 Sum_probs=119.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++..|+|+.++|||.|++.++++.+......+....+.+..+...+....+.+-|.+-. ....+...- ..+|++.+
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~ 501 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACL 501 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEE
Confidence 6789999999999999999999999998877777777787777777777777778887643 222211111 68999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCCCCHHHHHHHH
Q 028283 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~~i 163 (211)
+||.+++.++..+....+.-... .+.|+++|++|+|+.+..+...-+-.+++.+++++ .+..|.+..-. .++|.+|
T Consensus 502 ~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~kL 578 (625)
T KOG1707|consen 502 VYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIKL 578 (625)
T ss_pred ecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHHH
Confidence 99999999998887766554443 48999999999999764433223337899999886 56667664223 6888888
Q ss_pred HHHHH
Q 028283 164 AAKIL 168 (211)
Q Consensus 164 ~~~i~ 168 (211)
..+..
T Consensus 579 ~~~A~ 583 (625)
T KOG1707|consen 579 ATMAQ 583 (625)
T ss_pred HHhhh
Confidence 76654
No 293
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.34 E-value=4.7e-11 Score=95.62 Aligned_cols=83 Identities=19% Similarity=0.133 Sum_probs=58.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEE---------------EEEEEEeCCCcchh---
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP---------------IKLQIWDTAGQESF--- 68 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~--- 68 (211)
++|+++|.|++|||||+|+|++........+.++.+.....+.+.+.. .++.++|+||....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999887544444544545544444444421 35899999995321
Q ss_pred ----hhchHHHhccccEEEEEEeCC
Q 028283 69 ----RSITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 69 ----~~~~~~~~~~~d~~i~v~d~~ 89 (211)
.......++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112333467899999999984
No 294
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=8.5e-12 Score=92.72 Aligned_cols=163 Identities=20% Similarity=0.282 Sum_probs=110.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh---chHHHhccccEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---ITRSYYRGAAGAL 83 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---~~~~~~~~~d~~i 83 (211)
.+|+++|..-+|||| +++...++.++...-....+.....-.+.+.-+.+.+||+||+..+.. -....++.+-++|
T Consensus 28 p~ilLMG~rRsGKsS-I~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSS-IQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcch-hhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 679999999999999 667777777776555544444444444555567899999999876544 3667789999999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCCC--CCCHHHHHH-----HH----HHcCCcEEEEeC
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRR--AVSKEEGEQ-----FA----KENGLLFLEASA 150 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~--~~~~~~~~~-----~~----~~~~~~~~~~s~ 150 (211)
||+|+.+. ..+.+..+...+.+.. .+++.+-|+++|.|-..+. ......+.+ ++ ....+.++.+|.
T Consensus 107 fvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 99999774 2344444444443333 2688899999999974321 111111111 11 112345888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh
Q 028283 151 RTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 151 ~~~~~i~~~~~~i~~~i~~~~~ 172 (211)
.+ .++.|+|..+++++..+.+
T Consensus 186 yD-HSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 186 YD-HSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred cc-hHHHHHHHHHHHHHhhhch
Confidence 77 5899999999999887776
No 295
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.34 E-value=8e-11 Score=89.44 Aligned_cols=140 Identities=17% Similarity=0.163 Sum_probs=83.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
....|+++|++|+|||||++.|.+...........|. + .+ ......++.++||||.. .......+.+|.+++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVll 109 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVLL 109 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH---HHHHHHHHhcCEEEE
Confidence 4567999999999999999999865322111111121 1 11 11234568899999864 223345688999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcCCCCeE-EEEEeCCCCCCCCC-CC--HHHHHH-HHHH--cCCcEEEEeCCCCCCH
Q 028283 85 VYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAHRRA-VS--KEEGEQ-FAKE--NGLLFLEASARTAQNV 156 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~-~~--~~~~~~-~~~~--~~~~~~~~s~~~~~~i 156 (211)
|+|+........ ..++..+.. .+.|. ++|+||+|+.+... .. .++++. +..+ .+.+++.+|++++-.+
T Consensus 110 viDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 110 LIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred EEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 999976433222 223333332 36775 45999999864221 10 112222 2222 3457999999987443
No 296
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.34 E-value=1.5e-11 Score=98.46 Aligned_cols=158 Identities=12% Similarity=0.149 Sum_probs=77.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC---eeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHH-----h
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT---IGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSY-----Y 76 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~-----~ 76 (211)
.+++|+|+|.+|+|||||||.|.+-......... +..+.....+.....+ .+.+||.||..........| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 5789999999999999999999764333222221 1222333333332222 47899999965433333333 4
Q ss_pred ccccEEEEEEeCCCHhHHHHHHHH-HHHHHHhcCCCCeEEEEEeCCCC--C-----CCCCCC----HHHHHHHHHH----
Q 028283 77 RGAAGALLVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNKCDL--A-----HRRAVS----KEEGEQFAKE---- 140 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~p~ivv~nK~D~--~-----~~~~~~----~~~~~~~~~~---- 140 (211)
...|.+|++.+-. |....-+ ...+.+. ++|+++|-+|.|. . .+.... .+++++.+.+
T Consensus 113 ~~yD~fiii~s~r----f~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISSER----FTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeCCC----CchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 5678888777643 2222222 2333333 8999999999996 1 111222 2334444443
Q ss_pred cCC---cEEEEeCCCCC--CHHHHHHHHHHHHHHH
Q 028283 141 NGL---LFLEASARTAQ--NVEEAFIKTAAKILQN 170 (211)
Q Consensus 141 ~~~---~~~~~s~~~~~--~i~~~~~~i~~~i~~~ 170 (211)
.++ ++|.+|..+-. ++..+.+.|.+.+...
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 233 48899988754 3555555555444333
No 297
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.33 E-value=1.9e-11 Score=91.76 Aligned_cols=152 Identities=18% Similarity=0.181 Sum_probs=84.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC------------CCCCCeeeEEEEEEEEEC--------------------C
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP------------VHDLTIGVEFGARMVTID--------------------G 52 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~--------------------~ 52 (211)
....|.++|+.|+|||||+++++...... ......-.......+.+. .
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 46789999999999999999997541100 000000000000001110 0
Q ss_pred EEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH
Q 028283 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 132 (211)
Q Consensus 53 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 132 (211)
....+.+++|.|.-.. . ..+....+..+.|+|..+..... ... ... .+.|.++++||+|+.+.......
T Consensus 101 ~~~d~IiIEt~G~l~~-~--~~~~~~~~~~i~Vvd~~~~d~~~--~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 101 DDIDLLFIENVGNLVC-P--ADFDLGEHMRVVLLSVTEGDDKP--LKY-PGM-----FKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCCEEEEecCCCcCC-C--cccccccCeEEEEEecCcccchh--hhh-HhH-----HhhCCEEEEEHHHccccchhhHH
Confidence 1235667777772110 1 11112344556777776543210 011 011 25678999999999653322233
Q ss_pred HHHHHHHHc--CCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 133 EGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 133 ~~~~~~~~~--~~~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
......++. ..+++.+|++++.|++++++++.+..
T Consensus 170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 444444443 37899999999999999999998753
No 298
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.33 E-value=2.2e-11 Score=96.84 Aligned_cols=114 Identities=14% Similarity=0.076 Sum_probs=71.6
Q ss_pred EEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC--CH
Q 028283 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SK 131 (211)
Q Consensus 54 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~ 131 (211)
.+.+.|+||+|..... ......+|.+++|.+.........+. ..+. ...-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~-----E~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIM-----ELADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhh-----hhhheEEeehhcccchhHHHHHH
Confidence 4678899999976322 22566899999998754444333322 2122 2223899999998643211 11
Q ss_pred HHHHHHHHH-------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhccccc
Q 028283 132 EEGEQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 178 (211)
Q Consensus 132 ~~~~~~~~~-------~~~~~~~~s~~~~~~i~~~~~~i~~~i~~~~~~~~~~~ 178 (211)
.+....... +..+++.+|++++.|++++++.|.+.+....+.+....
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~l~~ 270 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGEFAA 270 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCChHHH
Confidence 222222221 23579999999999999999999988765555444443
No 299
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.32 E-value=2.4e-12 Score=98.20 Aligned_cols=112 Identities=20% Similarity=0.182 Sum_probs=59.8
Q ss_pred EEEEEeCCCcchhhhchHHHh--------ccccEEEEEEeCCCHhH-HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028283 56 KLQIWDTAGQESFRSITRSYY--------RGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 56 ~~~l~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
.+.++|||||.++...+.... ...-++++++|+.-..+ ...+..++..+......+.|.+.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 588999999998777555444 34448888998764322 222333333333222238999999999999652
Q ss_pred CC------------C-------CHHHHHHHHHH---cC-C-cEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 127 RA------------V-------SKEEGEQFAKE---NG-L-LFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 127 ~~------------~-------~~~~~~~~~~~---~~-~-~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
.. . .....+..+.. .+ . .++.+|+.+++++.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 10 0 00111122221 12 3 699999999999999988776654
No 300
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.31 E-value=3.6e-11 Score=87.15 Aligned_cols=62 Identities=24% Similarity=0.247 Sum_probs=43.6
Q ss_pred EEEEeCCCcch----hhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCC
Q 028283 57 LQIWDTAGQES----FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121 (211)
Q Consensus 57 ~~l~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 121 (211)
+.|+||||... ....+..+++.+|++|+|.+++...+......+.+..... ...+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 78999999642 3356888889999999999999865544444444444333 44488889984
No 301
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.31 E-value=4.1e-11 Score=82.23 Aligned_cols=114 Identities=29% Similarity=0.410 Sum_probs=81.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+++.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999998776654333 3322 233344566778899999
Q ss_pred EeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028283 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157 (211)
Q Consensus 86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 157 (211)
++..+..++..+ |...+....+.+.|.++++||.|+.+......++.. .++++|++++.++.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999887665 776666555567889999999998543333333322 34567788888773
No 302
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.31 E-value=1.4e-10 Score=93.26 Aligned_cols=161 Identities=17% Similarity=0.221 Sum_probs=95.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC--------------CCee-------eEE---EEEEEEE-CCEEEEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------------LTIG-------VEF---GARMVTI-DGRPIKLQI 59 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~~~~-------~~~---~~~~~~~-~~~~~~~~l 59 (211)
..+.|.|+|+.++|||||+|+|.+.-..+... ...| +-+ ....+.+ ++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 46889999999999999999999872211111 1112 112 2222322 556678899
Q ss_pred EeCCCcchhhh-----------------------------chHHHhc-cccEEEEEE-eCC--C--Hh-HHHHHHHHHHH
Q 028283 60 WDTAGQESFRS-----------------------------ITRSYYR-GAAGALLVY-DIT--R--RE-TFNHLSSWLED 103 (211)
Q Consensus 60 ~D~~G~~~~~~-----------------------------~~~~~~~-~~d~~i~v~-d~~--~--~~-s~~~~~~~~~~ 103 (211)
+||+|.....+ -+...+. .+|..|+|. |.+ + ++ ....-..++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999321111 1444555 899888888 663 1 11 12333456666
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028283 104 ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 104 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~i~~~~~ 172 (211)
+... ++|+++++|+.|...+ ...+....+..+++++++.+|+..= .-++ ...|++.++..++
T Consensus 176 Lk~~---~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~l-~~~D-I~~il~~vL~EFP 237 (492)
T TIGR02836 176 LKEL---NKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVESM-RESD-ILSVLEEVLYEFP 237 (492)
T ss_pred HHhc---CCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHHc-CHHH-HHHHHHHHHhcCC
Confidence 6554 8999999999994322 2344455666667888777776542 2222 2334444444444
No 303
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.30 E-value=1.2e-10 Score=92.17 Aligned_cols=126 Identities=22% Similarity=0.293 Sum_probs=88.0
Q ss_pred EEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHH-------HHHHHHHHHHHHhcC----CCCeEEE
Q 028283 48 VTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-------NHLSSWLEDARQHAN----PNMSIML 116 (211)
Q Consensus 48 ~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~----~~~p~iv 116 (211)
+.+.-....+.+.|++||...+.-|...+.+++++|||+++++.+.. ..+..-+..+..... .+.++|+
T Consensus 188 ~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiL 267 (354)
T KOG0082|consen 188 VEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIIL 267 (354)
T ss_pred EEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEE
Confidence 33333446688999999999999999999999999999999875432 233333344444332 5799999
Q ss_pred EEeCCCCCCC--------------C-CCCHHHHHHHHHH----------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028283 117 VGNKCDLAHR--------------R-AVSKEEGEQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 117 v~nK~D~~~~--------------~-~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~i~~~i~~~~ 171 (211)
++||.|+-++ . ....+++..+... ..+....+.|.+..+|+.+|..+...+...+
T Consensus 268 FLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 268 FLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred EeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 9999998321 1 1233444333322 1344677889999999999999998887766
Q ss_pred hh
Q 028283 172 QE 173 (211)
Q Consensus 172 ~~ 173 (211)
-.
T Consensus 348 lk 349 (354)
T KOG0082|consen 348 LK 349 (354)
T ss_pred HH
Confidence 53
No 304
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.28 E-value=1.1e-11 Score=91.45 Aligned_cols=144 Identities=19% Similarity=0.317 Sum_probs=86.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEE--ECCEEEEEEEEeCCCcchhhh-----chHHHhcc
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT--IDGRPIKLQIWDTAGQESFRS-----ITRSYYRG 78 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~D~~G~~~~~~-----~~~~~~~~ 78 (211)
.-||+++|.+|+|||++= .+....+..-.....|.++.+.+-. +-| +..+.+||++|++.+.. .....+.+
T Consensus 4 ~kKvlLMGrsGsGKsSmr-siiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMR-SIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred cceEEEeccCCCCccccc-hhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhhee
Confidence 458999999999999953 4433333222222223333333322 222 35789999999985443 45567889
Q ss_pred ccEEEEEEeCCCHhHHHHHHHHHH---HHHHhcCCCCeEEEEEeCCCCCCCCC--CCHHH----HHHHHHHcCCcEEEEe
Q 028283 79 AAGALLVYDITRRETFNHLSSWLE---DARQHANPNMSIMLVGNKCDLAHRRA--VSKEE----GEQFAKENGLLFLEAS 149 (211)
Q Consensus 79 ~d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~----~~~~~~~~~~~~~~~s 149 (211)
++++|+|||+...+-...+..+.. .+.+.. +...+.++.+|.|+..... ...++ .+.+....++.++++|
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 999999999988765555544433 333332 5677899999999964321 11111 1122222345577777
Q ss_pred CCC
Q 028283 150 ART 152 (211)
Q Consensus 150 ~~~ 152 (211)
..+
T Consensus 161 iwD 163 (295)
T KOG3886|consen 161 IWD 163 (295)
T ss_pred hhh
Confidence 665
No 305
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.8e-10 Score=89.95 Aligned_cols=162 Identities=16% Similarity=0.181 Sum_probs=96.0
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCC-------CCCCCeeeEEEEEEEEE-------CCEEEEEEEEeCCCcchh
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-------VHDLTIGVEFGARMVTI-------DGRPIKLQIWDTAGQESF 68 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~~~l~D~~G~~~~ 68 (211)
....+++.++|+..+|||||.++|..-.-.. ......+.+.....+.+ .+...++.++|+||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 3567999999999999999999996432211 11112222222222222 456678899999999876
Q ss_pred hhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC--CCHHHHHH-HHHH-----
Q 028283 69 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQ-FAKE----- 140 (211)
Q Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~-~~~~----- 140 (211)
-.....-..-.|..|+|+|+...-.-+....+ .+-+.. -...+||+||.|...+.+ ...++... ..+.
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 66566666778899999999774322222111 111221 234677888888744321 11122211 1111
Q ss_pred --cCCcEEEEeCCCC----CCHHHHHHHHHHHHH
Q 028283 141 --NGLLFLEASARTA----QNVEEAFIKTAAKIL 168 (211)
Q Consensus 141 --~~~~~~~~s~~~~----~~i~~~~~~i~~~i~ 168 (211)
-+.|++++|++.| +.+.++.+.|...+.
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 2368999999999 556665555555543
No 306
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=4e-11 Score=101.28 Aligned_cols=168 Identities=19% Similarity=0.185 Sum_probs=110.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC------------CE-EE---EEEEEeCCCcchhh
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID------------GR-PI---KLQIWDTAGQESFR 69 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~~---~~~l~D~~G~~~~~ 69 (211)
.+-++|+|+..+|||-|+..+.+...........+..+....+... +. .+ .+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 4568999999999999999998766554443333322222222111 11 01 36789999999999
Q ss_pred hchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC------CCCC----------HHH
Q 028283 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR------RAVS----------KEE 133 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------~~~~----------~~~ 133 (211)
.+.......+|.+|+|+|+...-..+.+ ..+.-+...+.|+||++||+|..-. ..+. ..+
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqti----ESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~E 630 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQTI----ESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNE 630 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcchh----HHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHH
Confidence 9999999999999999999874221212 2222222348999999999996321 0000 011
Q ss_pred H--------HHHHHH-cC-------------CcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 028283 134 G--------EQFAKE-NG-------------LLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177 (211)
Q Consensus 134 ~--------~~~~~~-~~-------------~~~~~~s~~~~~~i~~~~~~i~~~i~~~~~~~~~~ 177 (211)
+ .+|+.. ++ +.++++||.+|+||-+++.+|+++....+-+...-
T Consensus 631 F~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y 696 (1064)
T KOG1144|consen 631 FKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAY 696 (1064)
T ss_pred HHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 1 112111 11 23679999999999999999999988888765543
No 307
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.25 E-value=2.5e-10 Score=89.22 Aligned_cols=139 Identities=17% Similarity=0.218 Sum_probs=75.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCC----------CCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh-----
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----- 70 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----- 70 (211)
.++|+|+|..|+|||||+|.|++....... ..+.........+.-++..+.+.++||||......
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999987654332 12233443344455578889999999999221000
Q ss_pred ---------chHHH-------------hccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028283 71 ---------ITRSY-------------YRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (211)
Q Consensus 71 ---------~~~~~-------------~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
....+ =..+|+++|+++.+... .-..+ ..+.+.. ..+++|.|+.|+|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di----~~mk~Ls-~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI----EFMKRLS-KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH----HHHHHHT-TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH----HHHHHhc-ccccEEeEEecccccCHH
Confidence 00001 13467999999976521 11122 2333333 378999999999985432
Q ss_pred CCC--HHHHHHHHHHcCCcEEEEe
Q 028283 128 AVS--KEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 128 ~~~--~~~~~~~~~~~~~~~~~~s 149 (211)
++. .+.+......+++.+|...
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHHHcCceeeccc
Confidence 221 1223444556777766544
No 308
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=5.8e-11 Score=102.41 Aligned_cols=118 Identities=18% Similarity=0.187 Sum_probs=88.5
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----C-----------CCCeeeEEEEEEEEECCE-EEEEEEEeCCCc
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----H-----------DLTIGVEFGARMVTIDGR-PIKLQIWDTAGQ 65 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~-~~~~~l~D~~G~ 65 (211)
.+..-+|.++|+-.+|||||..+|+....... . ....|.++....+++... ...++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 45678999999999999999999974322111 1 012255555555555444 588999999999
Q ss_pred chhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028283 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (211)
-.|.......++-+|++++|+|+......+...-|++... .++|.++++||+|..
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~ 141 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRL 141 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECcccc
Confidence 9999999999999999999999998655454555544433 289999999999974
No 309
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=6.8e-11 Score=97.67 Aligned_cols=153 Identities=20% Similarity=0.215 Sum_probs=106.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCC-----------------------------CCCCCCCeeeEEEEEEEEECCEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-----------------------------QPVHDLTIGVEFGARMVTIDGRPI 55 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 55 (211)
..+..+|+|+..+|||||+-+|+..-- ......-.|++..+....++-...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 467899999999999999988853210 111222337777777777877778
Q ss_pred EEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHh---HH---HHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC
Q 028283 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TF---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 56 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (211)
.+.|.|+||+..|-.....-...+|+.|+|+|++-.+ .| ..++.....++... -..++|++||+|+.+-.+-
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCccHH
Confidence 8999999999999888888889999999999997632 12 12333333333333 4568888999999764333
Q ss_pred CHHHHH----HHH-HHcC-----CcEEEEeCCCCCCHHHH
Q 028283 130 SKEEGE----QFA-KENG-----LLFLEASARTAQNVEEA 159 (211)
Q Consensus 130 ~~~~~~----~~~-~~~~-----~~~~~~s~~~~~~i~~~ 159 (211)
..+++. .|. +..+ +.|+++|+..|+|+...
T Consensus 334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 333332 333 2233 46999999999997654
No 310
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.23 E-value=5.8e-11 Score=85.88 Aligned_cols=149 Identities=17% Similarity=0.094 Sum_probs=89.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEE-------------EEEE----------------------C
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR-------------MVTI----------------------D 51 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~----------------------~ 51 (211)
+.|.|.|++|||||+|+.+++..-.......-++.+.+.. .+.+ .
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 7999999999999999998764322221111111111110 0000 1
Q ss_pred CEEEEEEEEeCCCcchhhhchHHHhcccc-EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC
Q 028283 52 GRPIKLQIWDTAGQESFRSITRSYYRGAA-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 130 (211)
Q Consensus 52 ~~~~~~~l~D~~G~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 130 (211)
.....+.|++.+|. -.. . ..+.-.| .-|+|+|.+..+.. .++-...+. ..=++|+||.|+......+
T Consensus 94 ~~~~Dll~iEs~GN-L~~--~-~sp~L~d~~~v~VidvteGe~~--P~K~gP~i~------~aDllVInK~DLa~~v~~d 161 (202)
T COG0378 94 FPDLDLLFIESVGN-LVC--P-FSPDLGDHLRVVVIDVTEGEDI--PRKGGPGIF------KADLLVINKTDLAPYVGAD 161 (202)
T ss_pred CCcCCEEEEecCcc-eec--c-cCcchhhceEEEEEECCCCCCC--cccCCCcee------EeeEEEEehHHhHHHhCcc
Confidence 11245667777771 111 1 1112234 88999998875320 000000011 1338999999998877777
Q ss_pred HHHHHHHHHHc--CCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 131 KEEGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 131 ~~~~~~~~~~~--~~~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
.+...+.+++. +.+++++|.++|+|++++++++....
T Consensus 162 levm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 162 LEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 78777777764 56899999999999999998887653
No 311
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=2.1e-10 Score=92.02 Aligned_cols=133 Identities=19% Similarity=0.157 Sum_probs=91.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 64 (211)
.+-..+|+-+|.+|||||..+|+--..... .....|+......+.++.....++|.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 445678999999999999999862111000 011226666666677777778899999999
Q ss_pred cchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCC
Q 028283 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL 143 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 143 (211)
++.+..-+-..+..+|.++.|+|+.....-+ . +..+.-....++|++-++||.|..... +.++..+..+..++
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T---~KLfeVcrlR~iPI~TFiNKlDR~~rd--P~ELLdEiE~~L~i 163 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-T---LKLFEVCRLRDIPIFTFINKLDREGRD--PLELLDEIEEELGI 163 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHH-H---HHHHHHHhhcCCceEEEeeccccccCC--hHHHHHHHHHHhCc
Confidence 9999988888899999999999998753211 1 222232333599999999999985433 34555555444443
No 312
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.21 E-value=3.1e-10 Score=86.39 Aligned_cols=118 Identities=16% Similarity=0.186 Sum_probs=69.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCee-----e------EEEEEEE-------------------------
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-----V------EFGARMV------------------------- 48 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-----~------~~~~~~~------------------------- 48 (211)
..++|+|+|+.|+||||+++.+.+..+.+.....++ . +.+...+
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 456899999999999999999998753221111000 0 0000001
Q ss_pred -------------EECCE-EEEEEEEeCCCcch-------------hhhchHHHhcc-ccEEEEEEeCCCHhHHHHHHHH
Q 028283 49 -------------TIDGR-PIKLQIWDTAGQES-------------FRSITRSYYRG-AAGALLVYDITRRETFNHLSSW 100 (211)
Q Consensus 49 -------------~~~~~-~~~~~l~D~~G~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~ 100 (211)
.+.+. -..+.++|+||... ...+...|+++ .+.+++|+|+.....-.....+
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 11000 13588999999642 11256667774 4588999987653221111222
Q ss_pred HHHHHHhcCCCCeEEEEEeCCCCCC
Q 028283 101 LEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 101 ~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (211)
...+. ..+.|+++|+||.|...
T Consensus 185 a~~ld---~~~~rti~ViTK~D~~~ 206 (240)
T smart00053 185 AKEVD---PQGERTIGVITKLDLMD 206 (240)
T ss_pred HHHHH---HcCCcEEEEEECCCCCC
Confidence 22222 24789999999999865
No 313
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.20 E-value=2.1e-10 Score=90.86 Aligned_cols=104 Identities=15% Similarity=0.048 Sum_probs=64.8
Q ss_pred EEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH
Q 028283 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 133 (211)
Q Consensus 54 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 133 (211)
.+.+.|+||+|... ........+|.++++...... ..+......+ .++|.++++||+|+..........
T Consensus 126 g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 46788999999542 223456778888888654332 2233332222 267789999999996532211000
Q ss_pred ------HHHHHH---HcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028283 134 ------GEQFAK---ENGLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 134 ------~~~~~~---~~~~~~~~~s~~~~~~i~~~~~~i~~~i~ 168 (211)
...+.. .+..+++++|++++.|+++++++|.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 011111 12346999999999999999999988744
No 314
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.19 E-value=1.1e-09 Score=92.92 Aligned_cols=120 Identities=14% Similarity=0.150 Sum_probs=73.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh-------h---ch
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------S---IT 72 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~---~~ 72 (211)
+..++|+|+|.+|+||||++|.|++........ ...+..........++ ..+.++||||..... . ..
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 456899999999999999999999886443322 1222222222233444 458899999955321 1 12
Q ss_pred HHHhc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC--CCCeEEEEEeCCCCCC
Q 028283 73 RSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAH 125 (211)
Q Consensus 73 ~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~ 125 (211)
..++. ..|++|+|..+........-..++..+..... .=..+||+.|+.|..+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 22333 47899999987643221122244555555443 1245788889999864
No 315
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.17 E-value=5.7e-11 Score=91.88 Aligned_cols=158 Identities=22% Similarity=0.152 Sum_probs=109.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchh--------hhchHHH
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF--------RSITRSY 75 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~--------~~~~~~~ 75 (211)
....-|.|||..++|||||+++|.+....+...-+.+.+.+.+...+...+ .+.+.||.|.-.- ...+..-
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 345679999999999999999999777766665555666666666665544 3668899994321 1123334
Q ss_pred hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeE----EEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC
Q 028283 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI----MLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR 151 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~----ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 151 (211)
...+|.++.|.|+++|..-.+....+..+....-+..|. +=|-||.|........ + .+ .-+.+|++
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-E--------~n-~~v~isal 324 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-E--------KN-LDVGISAL 324 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-c--------cC-Cccccccc
Confidence 568999999999999987676666666666664433333 4455788874422111 1 11 26779999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q 028283 152 TAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 152 ~~~~i~~~~~~i~~~i~~~~~ 172 (211)
+|+|++++...+-..+.....
T Consensus 325 tgdgl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410|consen 325 TGDGLEELLKAEETKVASETT 345 (410)
T ss_pred cCccHHHHHHHHHHHhhhhhe
Confidence 999999999888887766554
No 316
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=3.1e-10 Score=86.82 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=109.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCC----------C----CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF----------Q----PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 70 (211)
..++|..+|+..-|||||..++..... . .......|+++....+.++-.+..+..+|+||+..|-.
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence 568999999999999999888753211 0 11222447888888888877788899999999999998
Q ss_pred chHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeE-EEEEeCCCCCCCCCC---CHHHHHHHHHHcCC---
Q 028283 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAHRRAV---SKEEGEQFAKENGL--- 143 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~--- 143 (211)
+...-..+.|+.|+|+++.|..- .+.+..+...++. ++|. ++++||+|+.+..++ -..+.+.+...+++
T Consensus 91 NMItgAaqmDgAILVVsA~dGpm-PqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd 166 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGD 166 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88888889999999999998432 1112222222222 7765 555899999864432 22345667777665
Q ss_pred --cEEEEeCCCCC-C---HHHHHHHHHHHHHHHHhhcc
Q 028283 144 --LFLEASARTAQ-N---VEEAFIKTAAKILQNIQEGA 175 (211)
Q Consensus 144 --~~~~~s~~~~~-~---i~~~~~~i~~~i~~~~~~~~ 175 (211)
|++.-|++..- + -.+....|++.+.+..+.++
T Consensus 167 ~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe 204 (394)
T COG0050 167 DTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE 204 (394)
T ss_pred CcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC
Confidence 47777766431 1 22233344455544444433
No 317
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.14 E-value=1.2e-09 Score=86.18 Aligned_cols=162 Identities=15% Similarity=0.242 Sum_probs=94.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh----
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---- 70 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~---- 70 (211)
..++|+++|+.|.|||||+|.|++...... ..+++....+...+.-++..+.+.+.||||....-.
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 568999999999999999999998743222 223444555555555578888999999999321110
Q ss_pred ----------chHHHh--------------ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028283 71 ----------ITRSYY--------------RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 71 ----------~~~~~~--------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
....|+ ..+|+++|.+..+.. .+..++ +..+.+.. ..+.+|-|+.|+|....
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~D--Ie~Mk~ls-~~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLD--IEAMKRLS-KRVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHH--HHHHHHHh-cccCeeeeeeccccCCH
Confidence 111111 225577777776542 111111 12223332 37889999999998543
Q ss_pred CCC--CHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028283 127 RAV--SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 127 ~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~i~~~~~ 172 (211)
.++ -.+.+.+....+++++|. ..+.+.-.+......+.+....|
T Consensus 178 ~El~~~K~~I~~~i~~~nI~vf~--pyd~e~~~~e~~e~~~~l~~~~P 223 (373)
T COG5019 178 DELAEFKERIREDLEQYNIPVFD--PYDPEDDEDESLEENQDLRSLIP 223 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCceeC--CCCccccchhhHHHHHHHhhcCC
Confidence 221 123345566678898885 34544432222333444444444
No 318
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=6.3e-10 Score=93.30 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=85.2
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC---------------eeeEEE--EEEEE---ECCEEEEEEEEeC
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT---------------IGVEFG--ARMVT---IDGRPIKLQIWDT 62 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~---------------~~~~~~--~~~~~---~~~~~~~~~l~D~ 62 (211)
.+...+|+++|+-+.|||+|+..|..+......... .|..+. ..++- ..++.+-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 356789999999999999999999866543321110 012221 12221 2566678899999
Q ss_pred CCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028283 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123 (211)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 123 (211)
||+-.+.....+.++.+|++++|+|+.+.-.+...+.....++ .+.|+.+++||.|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----ccCcEEEEEehhHH
Confidence 9999999999999999999999999988766554443333333 38999999999996
No 319
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=5.3e-09 Score=83.02 Aligned_cols=84 Identities=21% Similarity=0.183 Sum_probs=61.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC----------------EEEEEEEEeCCCcc---
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG----------------RPIKLQIWDTAGQE--- 66 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~D~~G~~--- 66 (211)
.+++.+||-|+||||||+|.++........+|+.+++.......+.. ....+.|+|.+|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 37899999999999999999998886656666656655555444321 23468999999932
Q ss_pred ----hhhhchHHHhccccEEEEEEeCC
Q 028283 67 ----SFRSITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 67 ----~~~~~~~~~~~~~d~~i~v~d~~ 89 (211)
-......+-++++|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 22234455578999999999965
No 320
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.4e-09 Score=87.58 Aligned_cols=157 Identities=17% Similarity=0.075 Sum_probs=107.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEE
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
-|+..|+-.-|||||+..+.+...... ....-|.+........+..+..+.|+|.||++++-.....-+...|.+++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 578899999999999999987654321 1122244554444455444457899999999999888888888999999999
Q ss_pred eCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH---HcCCcEEEEeCCCCCCHHHHHHHH
Q 028283 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK---ENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 87 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+.++.-..+ ..+.+..+.... ....++|++|+|..++..+. +...+... ..+.+++.+|+++|+||+++-+.|
T Consensus 82 ~~deGl~~q-tgEhL~iLdllg--i~~giivltk~D~~d~~r~e-~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l 157 (447)
T COG3276 82 AADEGLMAQ-TGEHLLILDLLG--IKNGIIVLTKADRVDEARIE-QKIKQILADLSLANAKIFKTSAKTGRGIEELKNEL 157 (447)
T ss_pred eCccCcchh-hHHHHHHHHhcC--CCceEEEEeccccccHHHHH-HHHHHHHhhcccccccccccccccCCCHHHHHHHH
Confidence 997632222 122222223221 34459999999997654221 22222222 345678999999999999999998
Q ss_pred HHHHH
Q 028283 164 AAKIL 168 (211)
Q Consensus 164 ~~~i~ 168 (211)
.+..-
T Consensus 158 ~~L~~ 162 (447)
T COG3276 158 IDLLE 162 (447)
T ss_pred HHhhh
Confidence 88873
No 321
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=8.8e-10 Score=82.07 Aligned_cols=148 Identities=17% Similarity=0.231 Sum_probs=84.6
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCC---------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcch----
Q 028283 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP---------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---- 67 (211)
Q Consensus 1 m~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~---- 67 (211)
|..-..++|+|||.+|.|||||+|.|....... ..+.++........+.-++...++.++||||...
T Consensus 41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN 120 (336)
T KOG1547|consen 41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN 120 (336)
T ss_pred HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence 344567999999999999999999997543322 2223434444444455577788999999999221
Q ss_pred ----------------------hhhchHHHhcc--ccEEEEEEeCCCHhHHHHHH-HHHHHHHHhcCCCCeEEEEEeCCC
Q 028283 68 ----------------------FRSITRSYYRG--AAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCD 122 (211)
Q Consensus 68 ----------------------~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D 122 (211)
........++. +++++|.+..+.. ++..++ .++..+.+ -+.++-|+-|+|
T Consensus 121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNvvPVIakaD 195 (336)
T KOG1547|consen 121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNVVPVIAKAD 195 (336)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hheeeeeEeecc
Confidence 11112222333 4456666655542 222222 22333332 456788889999
Q ss_pred CCC--CCCCCHHHHHHHHHHcCCcEEEEeCCCC
Q 028283 123 LAH--RRAVSKEEGEQFAKENGLLFLEASARTA 153 (211)
Q Consensus 123 ~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 153 (211)
... ++..-.+.+++-...+++.+|+-.+.+.
T Consensus 196 tlTleEr~~FkqrI~~el~~~~i~vYPq~~fde 228 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKELEKHGIDVYPQDSFDE 228 (336)
T ss_pred cccHHHHHHHHHHHHHHHHhcCccccccccccc
Confidence 632 1111122233444457888887766554
No 322
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.06 E-value=6.2e-10 Score=86.41 Aligned_cols=81 Identities=21% Similarity=0.146 Sum_probs=57.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCcchh-----
Q 028283 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQESF----- 68 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~~----- 68 (211)
|+++|.|++|||||+|+|++........+.++.+.....+.+.+. ...+.++|+||...-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999998875554555555555555555443 235899999994321
Q ss_pred --hhchHHHhccccEEEEEEeCC
Q 028283 69 --RSITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 69 --~~~~~~~~~~~d~~i~v~d~~ 89 (211)
.......++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 112333467899999999874
No 323
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.06 E-value=1.2e-08 Score=76.64 Aligned_cols=86 Identities=24% Similarity=0.210 Sum_probs=66.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh-------chHHHhcc
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-------ITRSYYRG 78 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~ 78 (211)
..+|+++|.|.+|||||+..+..-........+++.+.-...+.+++.. +++.|.||...-.+ ...+..+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEeec
Confidence 4689999999999999999998766555556666888888888888876 56889999543222 34456678
Q ss_pred ccEEEEEEeCCCHhH
Q 028283 79 AAGALLVYDITRRET 93 (211)
Q Consensus 79 ~d~~i~v~d~~~~~s 93 (211)
+|.+++|.|++..+.
T Consensus 140 aDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 140 ADLILMVLDATKSED 154 (364)
T ss_pred ccEEEEEecCCcchh
Confidence 999999999987544
No 324
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=3e-09 Score=84.45 Aligned_cols=161 Identities=17% Similarity=0.226 Sum_probs=96.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC---------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh------
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------ 69 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~------ 69 (211)
..+.++++|+.|.|||||+|.|+...+... ...+.........+.-++..+++.+.||||....-
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 358999999999999999999987754332 22244455555555567888999999999922110
Q ss_pred --------hchH-----------HHhc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028283 70 --------SITR-----------SYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 70 --------~~~~-----------~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
+... ..+. .+|+++|.+..+.. .+..++ +..+.+.. .++.+|-|+.|+|.....+
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~l~-~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKKLS-KKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHHHh-ccccccceeeccccCCHHH
Confidence 0111 1222 46677887776542 111111 11222222 3788999999999854322
Q ss_pred C--CHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028283 129 V--SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 129 ~--~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~i~~~~~ 172 (211)
+ ....+.+....+++++|....-.. ++.+....+.+....|
T Consensus 176 l~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~~P 218 (366)
T KOG2655|consen 176 LNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKSSIP 218 (366)
T ss_pred HHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhhcCC
Confidence 2 123345566667888776654443 4444455555555444
No 325
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.01 E-value=4.2e-09 Score=77.97 Aligned_cols=93 Identities=24% Similarity=0.171 Sum_probs=65.2
Q ss_pred hhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHH-----HHcC
Q 028283 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENG 142 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~ 142 (211)
+...+..+++.+|++++|+|+.++.. .|...+... ..+.|+++|+||+|+..... ..+....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 56778889999999999999988542 122222222 23789999999999964332 233333333 2233
Q ss_pred C---cEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 143 L---LFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 143 ~---~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
. .++.+|++++.|++++++.|.+.+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3 589999999999999999988776
No 326
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.01 E-value=3.2e-09 Score=87.15 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=77.6
Q ss_pred EEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhH-------HHHHHHHHHHHHHhcC----CCCeEEEEEeCC
Q 028283 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET-------FNHLSSWLEDARQHAN----PNMSIMLVGNKC 121 (211)
Q Consensus 53 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~~~~~~----~~~p~ivv~nK~ 121 (211)
....+.++|++|+...+..|..++..++++|||+++++.+. ...+.+-+..+..... .+.|+++++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 34568899999999999999999999999999999875322 1334333333333222 589999999999
Q ss_pred CCCC------C----------CC--CCHHHHHHHHHH------------cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028283 122 DLAH------R----------RA--VSKEEGEQFAKE------------NGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 122 D~~~------~----------~~--~~~~~~~~~~~~------------~~~~~~~~s~~~~~~i~~~~~~i~~~i 167 (211)
|+-. + .. -..+.+..+... ..+.+..++|.+..++..+|+.+.+.+
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9621 0 11 234555554443 112366888998889999888877653
No 327
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.98 E-value=3e-09 Score=87.53 Aligned_cols=162 Identities=20% Similarity=0.368 Sum_probs=118.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+|+.|||..++|||+|+++++.+.+.+...+- +..+ .+++.+++....+.+.|.+|.. ...|...+|++||
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~~-kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGRF-KKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCc-Cccc-eeeEEeeccceEeeeecccCCc-----hhhhhhhccceEE
Confidence 4579999999999999999999988876654443 4444 3445678888788888988832 3345667999999
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHhcC-CCCeEEEEEeCCCCCC--CCCCCHHHHHHHHH-HcCCcEEEEeCCCCCCHHHHH
Q 028283 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAH--RRAVSKEEGEQFAK-ENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~~~ 160 (211)
||...+..+++.+..+...+..+.. ...|+++++++.-... ++.+.....++++. ...+.+|+.++..|.++..+|
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 9999999999888877666654332 4677888877655432 22233334444433 356679999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 028283 161 IKTAAKILQNIQE 173 (211)
Q Consensus 161 ~~i~~~i~~~~~~ 173 (211)
+.+..++......
T Consensus 182 ~~~~~k~i~~~~~ 194 (749)
T KOG0705|consen 182 QEVAQKIVQLRKY 194 (749)
T ss_pred HHHHHHHHHHHhh
Confidence 9988887766543
No 328
>PRK12289 GTPase RsgA; Reviewed
Probab=98.98 E-value=2.3e-09 Score=86.24 Aligned_cols=91 Identities=22% Similarity=0.227 Sum_probs=66.6
Q ss_pred hchHHHhccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEE
Q 028283 70 SITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEA 148 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (211)
.+....+.++|.+++|+|+.++. ....+..|+..... .++|+++|+||+|+..... .+.........++.++.+
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 34555688999999999998865 44456666655532 3899999999999964321 122333445678899999
Q ss_pred eCCCCCCHHHHHHHHHH
Q 028283 149 SARTAQNVEEAFIKTAA 165 (211)
Q Consensus 149 s~~~~~~i~~~~~~i~~ 165 (211)
|++++.|++++++.|..
T Consensus 156 SA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 156 SVETGIGLEALLEQLRN 172 (352)
T ss_pred EcCCCCCHHHHhhhhcc
Confidence 99999999999888754
No 329
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.97 E-value=2.1e-09 Score=83.55 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=40.3
Q ss_pred CCeEEEEEeCCCCCCCCCCCHHHHHHHHHH--cCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028283 111 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKE--NGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 111 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
..+-++++||+|+........+...+..+. ...+++.+|+++|+|++++.++|.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 455699999999965322233444444443 35789999999999999999988763
No 330
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.94 E-value=1.8e-08 Score=77.68 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=69.3
Q ss_pred EEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH
Q 028283 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 133 (211)
Q Consensus 54 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 133 (211)
.+.+.|++|.|--.. --...+-+|.+++|.-..-.+..+.++. .+.+.. =++|+||.|..... ....+
T Consensus 143 G~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~iK~---GimEia-----Di~vINKaD~~~A~-~a~r~ 210 (323)
T COG1703 143 GYDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGIKA---GIMEIA-----DIIVINKADRKGAE-KAARE 210 (323)
T ss_pred CCCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHHHh---hhhhhh-----heeeEeccChhhHH-HHHHH
Confidence 356889999885322 2344556898888887655544444332 333333 28999999964321 11111
Q ss_pred HH---HHH----H--HcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 028283 134 GE---QFA----K--ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 176 (211)
Q Consensus 134 ~~---~~~----~--~~~~~~~~~s~~~~~~i~~~~~~i~~~i~~~~~~~~~ 176 (211)
.. .+. . .+.-+++.+|+.+|+|++++++.|.+.....-..+..
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~~ 262 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGLF 262 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcccc
Confidence 11 111 1 1345799999999999999999998877666665544
No 331
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.94 E-value=4.2e-10 Score=85.28 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=64.5
Q ss_pred EEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHH
Q 028283 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 134 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 134 (211)
+.+.|++|.|-- +.-.....-+|.+++|....-.+..+.++. .+.+.. =++|+||+|.+.... ...+.
T Consensus 122 ~D~IiiETVGvG---QsE~~I~~~aD~~v~v~~Pg~GD~iQ~~Ka---GimEia-----Di~vVNKaD~~gA~~-~~~~l 189 (266)
T PF03308_consen 122 FDVIIIETVGVG---QSEVDIADMADTVVLVLVPGLGDEIQAIKA---GIMEIA-----DIFVVNKADRPGADR-TVRDL 189 (266)
T ss_dssp -SEEEEEEESSS---THHHHHHTTSSEEEEEEESSTCCCCCTB-T---THHHH------SEEEEE--SHHHHHH-HHHHH
T ss_pred CCEEEEeCCCCC---ccHHHHHHhcCeEEEEecCCCccHHHHHhh---hhhhhc-----cEEEEeCCChHHHHH-HHHHH
Confidence 557888888742 223345567999999998766544333322 222222 399999999643221 12222
Q ss_pred HHHHHH-------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 028283 135 EQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 176 (211)
Q Consensus 135 ~~~~~~-------~~~~~~~~s~~~~~~i~~~~~~i~~~i~~~~~~~~~ 176 (211)
+..... +..+++.+|+.++.|++++++.|.+........+..
T Consensus 190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg~~ 238 (266)
T PF03308_consen 190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESGEL 238 (266)
T ss_dssp HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcchH
Confidence 222221 235799999999999999999988766555554433
No 332
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.92 E-value=5.3e-09 Score=74.95 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=64.3
Q ss_pred hhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEE
Q 028283 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLE 147 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (211)
+..+...+..++|++|+|+|+.++...... .+...+. ..+.|+++++||+|+..... ......+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence 345677888899999999999876432211 1211121 23789999999999853211 11122333445678999
Q ss_pred EeCCCCCCHHHHHHHHHHHHH
Q 028283 148 ASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 148 ~s~~~~~~i~~~~~~i~~~i~ 168 (211)
+|++++.|++++++.+.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999988877664
No 333
>PRK12288 GTPase RsgA; Reviewed
Probab=98.91 E-value=7.4e-09 Score=83.24 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=66.5
Q ss_pred HhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC-CHHHHHHHHHHcCCcEEEEeCCCC
Q 028283 75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKENGLLFLEASARTA 153 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~ 153 (211)
+..++|.+++|++.....++..+..|+..... .++|+++|+||+|+...... ............+.+++.+|++++
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 35679999999999877888889898765542 37899999999999643211 112233344557889999999999
Q ss_pred CCHHHHHHHHHH
Q 028283 154 QNVEEAFIKTAA 165 (211)
Q Consensus 154 ~~i~~~~~~i~~ 165 (211)
.|++++++.|..
T Consensus 194 ~GideL~~~L~~ 205 (347)
T PRK12288 194 EGLEELEAALTG 205 (347)
T ss_pred cCHHHHHHHHhh
Confidence 999999988754
No 334
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.85 E-value=1.4e-08 Score=80.00 Aligned_cols=88 Identities=18% Similarity=0.131 Sum_probs=67.1
Q ss_pred hHHHhccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeC
Q 028283 72 TRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA 150 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 150 (211)
....+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+.. .......+....+.+++.+|+
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA 146 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSA 146 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEEC
Confidence 344588999999999999987 77788888776654 378999999999996531 112223334457889999999
Q ss_pred CCCCCHHHHHHHHH
Q 028283 151 RTAQNVEEAFIKTA 164 (211)
Q Consensus 151 ~~~~~i~~~~~~i~ 164 (211)
+++.|+++++..|.
T Consensus 147 ~~g~gi~~L~~~L~ 160 (287)
T cd01854 147 KTGEGLDELREYLK 160 (287)
T ss_pred CCCccHHHHHhhhc
Confidence 99999999887665
No 335
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.85 E-value=7.8e-09 Score=72.83 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=39.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 65 (211)
+++++|.+|+|||||+|+|++........ ..+.+.....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence 79999999999999999999887643222 224444455555554 4689999995
No 336
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.5e-07 Score=79.63 Aligned_cols=143 Identities=20% Similarity=0.186 Sum_probs=86.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEE--------------------------------------
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR-------------------------------------- 46 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 46 (211)
...||++.|..++||||++|+++..+.-+.....++.-+...
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 468999999999999999999986655443222211111110
Q ss_pred -----EEEECCE-----EEEEEEEeCCCc---chhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCe
Q 028283 47 -----MVTIDGR-----PIKLQIWDTAGQ---ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS 113 (211)
Q Consensus 47 -----~~~~~~~-----~~~~~l~D~~G~---~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p 113 (211)
.+-++.. .-.+.++|.||. ....+-.......+|++|+|.++.+.-+.... .++....+ .+..
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~---~Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE---EKPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc---cCCc
Confidence 0001111 014678899994 35556677778899999999999775443322 22222222 2455
Q ss_pred EEEEEeCCCCCCCCCCCHHHHHHHHHHcCC--------cEEEEeCC
Q 028283 114 IMLVGNKCDLAHRRAVSKEEGEQFAKENGL--------LFLEASAR 151 (211)
Q Consensus 114 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~ 151 (211)
++|+.||+|....++.-.+++.....+... .+++||++
T Consensus 264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 667778999977655555555544333322 37888865
No 337
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.79 E-value=1.9e-08 Score=73.12 Aligned_cols=56 Identities=29% Similarity=0.355 Sum_probs=40.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 64 (211)
..++++++|.+|+|||||+|+|.+........ ..|.+.....+.++. .+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcceEEEEeCC---CEEEEECcC
Confidence 34799999999999999999999876543322 235555555555542 478999999
No 338
>PRK00098 GTPase RsgA; Reviewed
Probab=98.79 E-value=2.3e-08 Score=79.17 Aligned_cols=87 Identities=21% Similarity=0.171 Sum_probs=63.8
Q ss_pred HHHhccccEEEEEEeCCCHhHHH-HHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC
Q 028283 73 RSYYRGAAGALLVYDITRRETFN-HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR 151 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 151 (211)
...+.++|.+++|+|+.++.... .+..|+..+.. .++|+++|+||+|+.+... ............+.+++.+|++
T Consensus 75 q~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~ 150 (298)
T PRK00098 75 KLIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAK 150 (298)
T ss_pred cceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCC
Confidence 33468999999999998875433 34666665543 3799999999999963221 1233445556678899999999
Q ss_pred CCCCHHHHHHHH
Q 028283 152 TAQNVEEAFIKT 163 (211)
Q Consensus 152 ~~~~i~~~~~~i 163 (211)
++.|++++++.+
T Consensus 151 ~g~gi~~L~~~l 162 (298)
T PRK00098 151 EGEGLDELKPLL 162 (298)
T ss_pred CCccHHHHHhhc
Confidence 999999988766
No 339
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.78 E-value=2.7e-08 Score=71.41 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=38.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 64 (211)
..++|+++|.+|+|||||+|+|.+.........+ |.+.....+..+. .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~-g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP-GETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC-CeeEeEEEEEcCC---CEEEEECcC
Confidence 3578999999999999999999987654333222 4444444444332 367999999
No 340
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.78 E-value=3.3e-08 Score=75.33 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=94.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCC----------cchhhhch
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSIT 72 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G----------~~~~~~~~ 72 (211)
+.++.++++|.+++|||+|+|-++..+... ...+..+.+..+....+.. .+.++|.|| ...+....
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHhH
Confidence 456899999999999999999998665433 2222446666555555443 567899999 23455567
Q ss_pred HHHhcccc---EEEEEEeCCCHhH--HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC------CCCC-----HHHHHH
Q 028283 73 RSYYRGAA---GALLVYDITRRET--FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR------RAVS-----KEEGEQ 136 (211)
Q Consensus 73 ~~~~~~~d---~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------~~~~-----~~~~~~ 136 (211)
..|+.+-+ -+++.+|++-+.. -.....|+ .+.++|+.+|.||+|..-. ++.. ....-+
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~------ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~ 284 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWL------GENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR 284 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHH------hhcCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence 77776665 3445556554321 11122232 2249999999999997421 1110 011111
Q ss_pred HHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028283 137 FAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 137 ~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
.+.....+++.+|+.++.|++.+.-.+.+.
T Consensus 285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred cceeccCCceeeecccccCceeeeeehhhh
Confidence 111234467789999999998887665543
No 341
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=6.6e-08 Score=76.47 Aligned_cols=121 Identities=14% Similarity=0.211 Sum_probs=79.0
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-CeeeEEEEEEEEE------CCEE---------------------
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMVTI------DGRP--------------------- 54 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~--------------------- 54 (211)
++...-|+++|+-..||||||+.|+...++..... -.++++....+.- +|..
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 45677899999999999999999999888643332 1122222222211 1110
Q ss_pred ------------EEEEEEeCCCcc-----------hhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCC
Q 028283 55 ------------IKLQIWDTAGQE-----------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN 111 (211)
Q Consensus 55 ------------~~~~l~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 111 (211)
-.+.++||||.- .+.....=+...+|.+|++||+...+.-......+..+. .+.
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~E 211 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHE 211 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCc
Confidence 137899999932 233456667789999999999876544344444444443 345
Q ss_pred CeEEEEEeCCCCCCC
Q 028283 112 MSIMLVGNKCDLAHR 126 (211)
Q Consensus 112 ~p~ivv~nK~D~~~~ 126 (211)
-.+-||+||+|..+.
T Consensus 212 dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDT 226 (532)
T ss_pred ceeEEEeccccccCH
Confidence 567889999998653
No 342
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.73 E-value=6.7e-08 Score=69.20 Aligned_cols=85 Identities=16% Similarity=0.067 Sum_probs=55.6
Q ss_pred cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHH-HHHHHHHcCCcEEEEeCCCCCCHHH
Q 028283 80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE-GEQFAKENGLLFLEASARTAQNVEE 158 (211)
Q Consensus 80 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~ 158 (211)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+.+... ... ...+....+..++.+|++++.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~--~~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEV--LRKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHH--HHHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 78999999988754332 22221 122224799999999999954221 111 1123223455689999999999999
Q ss_pred HHHHHHHHHHH
Q 028283 159 AFIKTAAKILQ 169 (211)
Q Consensus 159 ~~~~i~~~i~~ 169 (211)
+.+.+.+....
T Consensus 76 L~~~i~~~~~~ 86 (155)
T cd01849 76 KESAFTKQTNS 86 (155)
T ss_pred HHHHHHHHhHH
Confidence 99988776543
No 343
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1.3e-07 Score=74.08 Aligned_cols=170 Identities=21% Similarity=0.173 Sum_probs=112.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC----------CCCC----CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhh
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDK----------RFQP----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~ 70 (211)
..++|.-+|+..-|||||.-++..- ++.+ ......|+++...++.+......+.-.|+||+..|-.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 4578999999999999998777421 1111 1223457888888888888888888999999999988
Q ss_pred chHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC---CHHHHHHHHHHcCC----
Q 028283 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV---SKEEGEQFAKENGL---- 143 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~---- 143 (211)
+...-..+.|+.|+|+.++|..- .+.++.+...++.. -..++|++||.|+.++.++ -.-+++++..++++
T Consensus 133 NMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~ 209 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDN 209 (449)
T ss_pred HhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 87777889999999999998432 22333333333332 2447778999999754322 22345666666654
Q ss_pred -cEEEEeCC---CCC----CHHHHHHHHHHHHHHHHhhccccc
Q 028283 144 -LFLEASAR---TAQ----NVEEAFIKTAAKILQNIQEGALDA 178 (211)
Q Consensus 144 -~~~~~s~~---~~~----~i~~~~~~i~~~i~~~~~~~~~~~ 178 (211)
|++.-||+ .+. |. +....|++.+.+..+.++...
T Consensus 210 ~PvI~GSAL~ALeg~~peig~-~aI~kLldavDsyip~P~R~~ 251 (449)
T KOG0460|consen 210 TPVIRGSALCALEGRQPEIGL-EAIEKLLDAVDSYIPTPERDL 251 (449)
T ss_pred CCeeecchhhhhcCCCccccH-HHHHHHHHHHhccCCCccccc
Confidence 68887765 332 22 334566666655555444443
No 344
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.70 E-value=1e-07 Score=77.37 Aligned_cols=95 Identities=26% Similarity=0.323 Sum_probs=69.4
Q ss_pred cchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHH----HHHHH
Q 028283 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE----QFAKE 140 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~~ 140 (211)
.+.+..+...++..++++++|+|+.+.. ..|...+.+... +.|+++|+||+|+... ....+... +++..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHH
Confidence 5677778888889999999999998754 234444444432 6899999999999643 23333433 34555
Q ss_pred cCC---cEEEEeCCCCCCHHHHHHHHHHH
Q 028283 141 NGL---LFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 141 ~~~---~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
.++ .++.+||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 666 48999999999999999988654
No 345
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.69 E-value=1.1e-07 Score=76.45 Aligned_cols=83 Identities=20% Similarity=0.099 Sum_probs=61.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCcch---
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES--- 67 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~~--- 67 (211)
+++.++|.|++|||||++.|++... .....+..+.......+.+.+. ...+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998887 5544455555555555555442 24678999999543
Q ss_pred ----hhhchHHHhccccEEEEEEeCC
Q 028283 68 ----FRSITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 68 ----~~~~~~~~~~~~d~~i~v~d~~ 89 (211)
........++.+|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2224555678999999999975
No 346
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.68 E-value=1.2e-07 Score=67.97 Aligned_cols=91 Identities=15% Similarity=0.087 Sum_probs=56.7
Q ss_pred HHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Q 028283 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA 153 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 153 (211)
..+..+|++++|+|+.++... ....+...+.. ...+.|+++|+||+|+...... ......+........+.+|++.+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~ 80 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGT-RCKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred HhhhhCCEEEEEEECCCCccc-cCHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecccc
Confidence 356789999999999986321 11222222222 2336899999999999542211 11122222222233578999999
Q ss_pred CCHHHHHHHHHHHH
Q 028283 154 QNVEEAFIKTAAKI 167 (211)
Q Consensus 154 ~~i~~~~~~i~~~i 167 (211)
.|++++++.+.+..
T Consensus 81 ~~~~~L~~~l~~~~ 94 (157)
T cd01858 81 FGKGSLIQLLRQFS 94 (157)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999988887654
No 347
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.67 E-value=7.6e-08 Score=70.07 Aligned_cols=57 Identities=26% Similarity=0.372 Sum_probs=40.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 65 (211)
..++++++|.+|+|||||+|+|.+..+.... ...+.+.....+.++ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4579999999999999999999987764322 222444444445554 34789999994
No 348
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.67 E-value=1.1e-06 Score=73.03 Aligned_cols=134 Identities=21% Similarity=0.301 Sum_probs=84.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC------Ce--------------------------------------
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TI-------------------------------------- 39 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~-------------------------------------- 39 (211)
+..++|+|||+..+||||.+..+......+.... ++
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 6789999999999999999988864433221100 00
Q ss_pred --------e--eEEEEEEEEECCEEE-EEEEEeCCCcc-------------hhhhchHHHhccccEEEEEEeCCCHhHHH
Q 028283 40 --------G--VEFGARMVTIDGRPI-KLQIWDTAGQE-------------SFRSITRSYYRGAAGALLVYDITRRETFN 95 (211)
Q Consensus 40 --------~--~~~~~~~~~~~~~~~-~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 95 (211)
| +......+++.|... ++.++|.||.. .......++..+.+++|+|+--.. .+
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VD 462 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VD 462 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cc
Confidence 2 222222233333332 57899999932 334478889999999999995322 12
Q ss_pred HHHHHHHHH-HHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 028283 96 HLSSWLEDA-RQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE 140 (211)
Q Consensus 96 ~~~~~~~~~-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 140 (211)
.-+.....+ ......+...|+|++|.|+.+....+..-++++...
T Consensus 463 AERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 463 AERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred hhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence 222222222 222235788999999999987766666767666554
No 349
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.66 E-value=1.2e-07 Score=69.03 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=64.8
Q ss_pred CCCcc-hhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 028283 62 TAGQE-SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE 140 (211)
Q Consensus 62 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 140 (211)
+||+. +........+.++|.+++|+|+.++...... .+... . .+.|+++++||+|+.+... .....++...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~---~--~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI---L--GNKPRIIVLNKADLADPKK--TKKWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH---h--cCCCEEEEEehhhcCChHH--HHHHHHHHHh
Confidence 35532 3344567788999999999999876432111 11111 1 2679999999999953211 1122233333
Q ss_pred cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028283 141 NGLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 141 ~~~~~~~~s~~~~~~i~~~~~~i~~~i~ 168 (211)
....++.+|++++.|++++.+.+.+.+.
T Consensus 74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 74 KGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 4456899999999999999988887764
No 350
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.63 E-value=1.3e-07 Score=74.14 Aligned_cols=57 Identities=28% Similarity=0.450 Sum_probs=41.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 65 (211)
..++++++|.+|+|||||+|+|.+......... .+.+.....+.++. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~-~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNR-PGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeecceEEEEeCC---CEEEEECCCc
Confidence 458899999999999999999998765433222 24455555555543 4689999996
No 351
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.63 E-value=1.4e-07 Score=67.59 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=39.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 64 (211)
...+++++|.+++|||||+|+|.+.... ...++.+.+.....+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4578999999999999999999976533 2333445444433333433 578999999
No 352
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.62 E-value=4.5e-07 Score=72.18 Aligned_cols=152 Identities=18% Similarity=0.140 Sum_probs=93.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--------------CeeeEEEEEEEEECC-----------------
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--------------TIGVEFGARMVTIDG----------------- 52 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~----------------- 52 (211)
+..+.|.+.|+...|||||+-.|..+..+...-. ..+.+.+...+-+++
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 4568899999999999999877765544332111 112222222233322
Q ss_pred ----EEEEEEEEeCCCcchhhh--chHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028283 53 ----RPIKLQIWDTAGQESFRS--ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 53 ----~~~~~~l~D~~G~~~~~~--~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
.+..+.|+||.|++.|-. +...+-.+.|..++|+.+++..+- ..++.+-.+.. -+.|++++++|+|+.++
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~-~tkEHLgi~~a---~~lPviVvvTK~D~~~d 270 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK-MTKEHLGIALA---MELPVIVVVTKIDMVPD 270 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch-hhhHhhhhhhh---hcCCEEEEEEecccCcH
Confidence 123478999999998876 444556889999999999885431 11122122122 28999999999999654
Q ss_pred CCCC--HHHHHHHHH----------------------H---cCCcEEEEeCCCCCCHHHH
Q 028283 127 RAVS--KEEGEQFAK----------------------E---NGLLFLEASARTAQNVEEA 159 (211)
Q Consensus 127 ~~~~--~~~~~~~~~----------------------~---~~~~~~~~s~~~~~~i~~~ 159 (211)
.... .+++....+ + .=+|++.+|+.+|+|++-+
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL 330 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL 330 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH
Confidence 2211 122221111 1 1247899999999998543
No 353
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.62 E-value=8.6e-08 Score=70.97 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=39.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCC-------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 64 (211)
..+++++|.+|+|||||+|+|.+..... ......+.+.....+.++. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 3589999999999999999999754311 1122225555555555543 468999999
No 354
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=1.4e-08 Score=78.37 Aligned_cols=166 Identities=18% Similarity=0.194 Sum_probs=102.5
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCeeeEE--E-EEEEEE------------------------
Q 028283 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEF--G-ARMVTI------------------------ 50 (211)
Q Consensus 1 m~~~~~~~I~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~--~-~~~~~~------------------------ 50 (211)
|++.-.++|.-+|+..-||||++.++.+-. |-.+.....+... . .+.+..
T Consensus 33 isRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c 112 (466)
T KOG0466|consen 33 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPC 112 (466)
T ss_pred hhheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCc
Confidence 455678999999999999999998875321 0000000000000 0 000000
Q ss_pred -----CC---EEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028283 51 -----DG---RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (211)
Q Consensus 51 -----~~---~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (211)
.+ --..+.|+|+||++...+....-..-.|++++++..+..-...+..+.+..+.... =+.++++-||.|
T Consensus 113 ~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiD 190 (466)
T KOG0466|consen 113 DRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKID 190 (466)
T ss_pred ccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhh
Confidence 01 01357899999999888766555566888999988776322222223333332222 356889999999
Q ss_pred CCCCCCC--CHHHHHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028283 123 LAHRRAV--SKEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 123 ~~~~~~~--~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~i~ 168 (211)
+..+.+. ..+++..|... .++|++++||.-..|++.+.++|++++.
T Consensus 191 li~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 191 LIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 9654332 22344455554 4678999999999999999988888774
No 355
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=4.9e-08 Score=78.34 Aligned_cols=116 Identities=19% Similarity=0.198 Sum_probs=90.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCC--------CCC--------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRF--------QPV--------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 69 (211)
.-+|.++.+-.+||||...|++.-.. ... ...-.|+++....++++.+..++.++||||+-.+.
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 34788999999999999999863211 111 11123777888888889888999999999999999
Q ss_pred hchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028283 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (211)
-..+..++-.|+++.|||.+.....+.+.-|++ ..+.+.|-++++||+|...
T Consensus 117 leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence 889999999999999999988655566666743 3445899999999999854
No 356
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.62 E-value=1.8e-07 Score=73.72 Aligned_cols=58 Identities=26% Similarity=0.391 Sum_probs=42.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 66 (211)
..++++++|.+|+|||||+|+|.+........ ..|.+.....+.++. .+.++||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 45899999999999999999999876533322 225555555555543 46799999953
No 357
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.59 E-value=2.7e-07 Score=72.25 Aligned_cols=85 Identities=20% Similarity=0.164 Sum_probs=64.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC---------------EEEEEEEEeCCCcch--
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG---------------RPIKLQIWDTAGQES-- 67 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~D~~G~~~-- 67 (211)
..+++.+||.|++|||||+|.|+.....+...|..+++.....+.+.. ....+.++|++|.-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 467999999999999999999999998888778777777766665532 235689999999432
Q ss_pred -----hhhchHHHhccccEEEEEEeCC
Q 028283 68 -----FRSITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 68 -----~~~~~~~~~~~~d~~i~v~d~~ 89 (211)
......+-++.+|+++.|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 2223344468899999999864
No 358
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.58 E-value=8.6e-08 Score=71.32 Aligned_cols=124 Identities=19% Similarity=0.200 Sum_probs=81.2
Q ss_pred EECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHH-------HHHHHHHHHHHHhcC----CCCeEEEE
Q 028283 49 TIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-------NHLSSWLEDARQHAN----PNMSIMLV 117 (211)
Q Consensus 49 ~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~~~~~~~----~~~p~ivv 117 (211)
.++-.++.+.+.|.+|+...+..|...+.++..++|++.++..+.. +.+..-...+..... ++.++|++
T Consensus 193 pfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlF 272 (359)
T KOG0085|consen 193 PFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILF 272 (359)
T ss_pred CcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEE
Confidence 3344556688999999999999999999999999988887654322 112111111211111 58899999
Q ss_pred EeCCCCCCCCC----------------CCHHHHHHHHHHc----C------CcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028283 118 GNKCDLAHRRA----------------VSKEEGEQFAKEN----G------LLFLEASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 118 ~nK~D~~~~~~----------------~~~~~~~~~~~~~----~------~~~~~~s~~~~~~i~~~~~~i~~~i~~~~ 171 (211)
+||.|+.++.. ...+.++.|.... + +.-.++.|.+.+|+.-+|..+...+++.+
T Consensus 273 LNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 273 LNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred echhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 99999865422 2223344444431 1 11246778888999999999888887765
Q ss_pred h
Q 028283 172 Q 172 (211)
Q Consensus 172 ~ 172 (211)
-
T Consensus 353 L 353 (359)
T KOG0085|consen 353 L 353 (359)
T ss_pred h
Confidence 4
No 359
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=3e-07 Score=76.87 Aligned_cols=114 Identities=20% Similarity=0.192 Sum_probs=81.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCC-----CC-----------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-----PV-----------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 69 (211)
.-+|.+.-+-.+||||+-.+.+....- +. .....|++....-......+..++++||||+-.+.
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 346778888899999999987632110 00 11122455555544455557889999999999999
Q ss_pred hchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028283 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 123 (211)
-.....++-.|++++|++......-+...-|++. .++ ++|.+.++||+|.
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~ry---~vP~i~FiNKmDR 168 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVESQTETVWRQM-KRY---NVPRICFINKMDR 168 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hhc---CCCeEEEEehhhh
Confidence 8899999999999999998876444444455433 333 8999999999996
No 360
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.55 E-value=2.8e-07 Score=69.80 Aligned_cols=118 Identities=16% Similarity=0.172 Sum_probs=75.5
Q ss_pred EEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHh-------HHHHHHHHHHHHHHhc----CCCCeEEEEEeCC
Q 028283 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE-------TFNHLSSWLEDARQHA----NPNMSIMLVGNKC 121 (211)
Q Consensus 53 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~ 121 (211)
..+.++.+|.+|+...+..|...+..+.++|||+..+... +...++.-+..+...= ...+.+|+++||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 3456899999999999999999999999999999887532 2233333333222211 1357789999999
Q ss_pred CCCCCC----------------------------CCCHHH--HHHHHHH-------------cCCcEEEEeCCCCCCHHH
Q 028283 122 DLAHRR----------------------------AVSKEE--GEQFAKE-------------NGLLFLEASARTAQNVEE 158 (211)
Q Consensus 122 D~~~~~----------------------------~~~~~~--~~~~~~~-------------~~~~~~~~s~~~~~~i~~ 158 (211)
|+.++. .....- ++.+.+. +-+.+.++.|.+.++|..
T Consensus 280 DllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrr 359 (379)
T KOG0099|consen 280 DLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 359 (379)
T ss_pred HHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHH
Confidence 973220 011110 1111111 123356788899999999
Q ss_pred HHHHHHHHHHHH
Q 028283 159 AFIKTAAKILQN 170 (211)
Q Consensus 159 ~~~~i~~~i~~~ 170 (211)
+|+..-..+.+.
T Consensus 360 VFnDcrdiIqr~ 371 (379)
T KOG0099|consen 360 VFNDCRDIIQRM 371 (379)
T ss_pred HHHHHHHHHHHH
Confidence 999866665543
No 361
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.54 E-value=6.9e-07 Score=70.02 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=66.6
Q ss_pred CCCcch-hhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 028283 62 TAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE 140 (211)
Q Consensus 62 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 140 (211)
+|||.. ........+..+|++++|+|+.++.+... .++..+. .+.|+++|+||+|+.+... .....++...
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHH
Confidence 466542 33456778899999999999987644222 1111111 2689999999999854211 1222223333
Q ss_pred cCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028283 141 NGLLFLEASARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 141 ~~~~~~~~s~~~~~~i~~~~~~i~~~i~~~ 170 (211)
.+.+++.+|++++.|++++.+.+.+.+...
T Consensus 76 ~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 76 KGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 456789999999999999988887776543
No 362
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.54 E-value=1.9e-07 Score=74.53 Aligned_cols=57 Identities=23% Similarity=0.379 Sum_probs=46.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 66 (211)
.++++|+|-|+||||||||+|.+.........+ |.+.....+.++.. +.++||||.-
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P-G~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP-GTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC-ceecceEEEEcCCC---eEEecCCCcC
Confidence 478999999999999999999998874444333 88888888877664 6799999954
No 363
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.53 E-value=3.3e-06 Score=64.11 Aligned_cols=86 Identities=16% Similarity=0.105 Sum_probs=53.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC--CCCCCCC---CCeeeEEEEEEEEECCEEEEEEEEeCCCcchh------hhchH
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHD---LTIGVEFGARMVTIDGRPIKLQIWDTAGQESF------RSITR 73 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~------~~~~~ 73 (211)
...-|.|+|++++|||+|+|.|++. .+..... .|.|+......+.. +....+.++||+|.... .....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHH
Confidence 4567899999999999999999988 5543322 12233322221111 23467899999995432 22233
Q ss_pred HHhcc--ccEEEEEEeCCCH
Q 028283 74 SYYRG--AAGALLVYDITRR 91 (211)
Q Consensus 74 ~~~~~--~d~~i~v~d~~~~ 91 (211)
..+.. +|.+||..+....
T Consensus 85 ~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 85 FALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHhCEEEEeccCccc
Confidence 33444 8888888877653
No 364
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=4.6e-07 Score=77.52 Aligned_cols=119 Identities=17% Similarity=0.181 Sum_probs=86.7
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCC--------------CCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028283 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRF--------------QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 1 m~~~~~~~I~v~G~~~~GKSsli~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 66 (211)
|..+..-+|+++-+..-|||||...|+.... ......+.|++.....+.+-...+.++++|+||+-
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 3456777899999999999999999975432 11122344666666666665667889999999999
Q ss_pred hhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028283 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123 (211)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 123 (211)
.|.+.......-+|++++++|+......+...-.++... .+...++|+||+|.
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~----~~~~~~lvinkidr 136 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI----EGLKPILVINKIDR 136 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH----ccCceEEEEehhhh
Confidence 999999999999999999999987543222222222222 25667999999993
No 365
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.52 E-value=1.6e-06 Score=80.24 Aligned_cols=112 Identities=20% Similarity=0.267 Sum_probs=68.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCC------CCCeeeEEEEEEEEECCEEEEEEEEeCCCcc--------hhhhchHH
Q 028283 9 YIIIGDTGVGKSCLLLQFTDKRFQPVH------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE--------SFRSITRS 74 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~--------~~~~~~~~ 74 (211)
.+|+|++|+||||+++.- +..+.-.. ...++.+.... ..+.+ +-.++||+|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~-wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCD-WWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccc-eEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 579999999999999876 33332110 11111111111 11222 23588999921 12233444
Q ss_pred Hh---------ccccEEEEEEeCCCHh-----H----HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028283 75 YY---------RGAAGALLVYDITRRE-----T----FNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 75 ~~---------~~~d~~i~v~d~~~~~-----s----~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (211)
++ +..|++|+++|+.+.- . ...++..++++........|++|+++|+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 43 4588999999986521 1 13455566677777678999999999999854
No 366
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.48 E-value=1.1e-06 Score=63.07 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=37.3
Q ss_pred EEEEEEEeCCCcchhhhchHH--------HhccccEEEEEEeCCCHhH-HHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028283 54 PIKLQIWDTAGQESFRSITRS--------YYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDL 123 (211)
Q Consensus 54 ~~~~~l~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 123 (211)
..+..++|++|.......... ..-..|.+++++|+..... ..+...+...+... =+|++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence 346788999996544433322 2335778999999765322 11222233333322 2779999995
No 367
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.47 E-value=2.1e-06 Score=65.11 Aligned_cols=85 Identities=18% Similarity=0.130 Sum_probs=59.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh-------hchHHHhccc
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------SITRSYYRGA 79 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 79 (211)
.++.++|.|.+|||||+..|.+...........+.+.....+.+++.+ +++.|.||..+-. ....+..+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeecc
Confidence 478999999999999999999876555544444444444445556554 6788999943221 2344556778
Q ss_pred cEEEEEEeCCCHhH
Q 028283 80 AGALLVYDITRRET 93 (211)
Q Consensus 80 d~~i~v~d~~~~~s 93 (211)
+.+++|.|+..|-+
T Consensus 138 nli~~vld~~kp~~ 151 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLS 151 (358)
T ss_pred cEEEEEeeccCccc
Confidence 89999999776543
No 368
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.47 E-value=6.3e-07 Score=63.07 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=52.8
Q ss_pred hHHHhccccEEEEEEeCCCHhHHH--HHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Q 028283 72 TRSYYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (211)
....+..+|++++|+|+.++.+.. .+..++... . .++|+++++||+|+.+... .....++....+..++++|
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iS 78 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFS 78 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence 345678899999999998875433 333333322 1 4789999999999854221 2334455556677899999
Q ss_pred CCCCCC
Q 028283 150 ARTAQN 155 (211)
Q Consensus 150 ~~~~~~ 155 (211)
++++.+
T Consensus 79 a~~~~~ 84 (141)
T cd01857 79 ALKENA 84 (141)
T ss_pred ecCCCc
Confidence 987653
No 369
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.45 E-value=1.1e-05 Score=65.39 Aligned_cols=161 Identities=17% Similarity=0.248 Sum_probs=89.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC----------------CC-----CCee---eEEEEEEEEE-CCEEEEEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------------HD-----LTIG---VEFGARMVTI-DGRPIKLQI 59 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~----------------~~-----~~~~---~~~~~~~~~~-~~~~~~~~l 59 (211)
-.+-|.||||.-+|||||++||...-..+. +. .|+. +......+.+ ++..+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 346799999999999999999953221111 00 0111 1112223444 577889999
Q ss_pred EeCCCcc-------------------hhhh----------chHHHhcc-cc-EEEEEEeCC--C--HhHH-HHHHHHHHH
Q 028283 60 WDTAGQE-------------------SFRS----------ITRSYYRG-AA-GALLVYDIT--R--RETF-NHLSSWLED 103 (211)
Q Consensus 60 ~D~~G~~-------------------~~~~----------~~~~~~~~-~d-~~i~v~d~~--~--~~s~-~~~~~~~~~ 103 (211)
+|+.|-. .|.. -+.-.++. +. ++++.-|-+ + ++.+ ..-...++.
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 9999811 0100 01111111 22 444444432 2 2332 223344455
Q ss_pred HHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028283 104 ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 104 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~i~~~~~ 172 (211)
+... ++|++|++|-.+-.. ....++..++..+++++++.+++..- .-+++ ..|++.++..++
T Consensus 176 Lk~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l-~~~DI-~~Il~~vLyEFP 237 (492)
T PF09547_consen 176 LKEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQL-REEDI-TRILEEVLYEFP 237 (492)
T ss_pred HHHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHc-CHHHH-HHHHHHHHhcCC
Confidence 5544 899999999887532 34556777888889999888886642 33332 344444544444
No 370
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.45 E-value=6.3e-07 Score=64.13 Aligned_cols=56 Identities=27% Similarity=0.342 Sum_probs=37.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 64 (211)
...+++++|.+|+|||||+|.|.+......... .+.+.....+.++ ..+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~-~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNV-PGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCC-CCcccceEEEEec---CCEEEEECCC
Confidence 457899999999999999999998664322111 1222222233333 2478999999
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.44 E-value=3.1e-06 Score=67.52 Aligned_cols=96 Identities=20% Similarity=0.118 Sum_probs=56.6
Q ss_pred EEEEEEEeCCCcchhhhc----hHHH--------hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCC
Q 028283 54 PIKLQIWDTAGQESFRSI----TRSY--------YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121 (211)
Q Consensus 54 ~~~~~l~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 121 (211)
.+.+.++||||....... ...+ ....+..++|+|++... ..+... ..+... -.+.-+++||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~---~~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEA---VGLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhh---CCCCEEEEECC
Confidence 357899999996532221 1111 23467889999998632 222221 222211 13457889999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 122 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
|.... .-.+...+...+.|+..++ +|++++++-.
T Consensus 270 D~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 270 DGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 95432 1234455566799988888 7778866543
No 372
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.44 E-value=1.3e-06 Score=68.80 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=67.4
Q ss_pred CCCcch-hhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHH
Q 028283 62 TAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE 140 (211)
Q Consensus 62 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 140 (211)
+|||.. ........+..+|++++|+|+.++.+... .++..+. .+.|+++|+||+|+.+... .+....+...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 567542 33456777889999999999987644221 1122211 1689999999999853211 1222333334
Q ss_pred cCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028283 141 NGLLFLEASARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 141 ~~~~~~~~s~~~~~~i~~~~~~i~~~i~~~ 170 (211)
.+.+++.+|++++.|++++.+.+.+.+...
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 467789999999999999988887776543
No 373
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=3.3e-06 Score=70.52 Aligned_cols=136 Identities=18% Similarity=0.182 Sum_probs=81.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+.++-++|+||+|+||||||+.|...-.........|. . ..+.+...++.|.++|.+ .. ......+-+|.++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GP----i-TvvsgK~RRiTflEcp~D--l~-~miDvaKIaDLVl 138 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGP----I-TVVSGKTRRITFLECPSD--LH-QMIDVAKIADLVL 138 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCc----e-EEeecceeEEEEEeChHH--HH-HHHhHHHhhheeE
Confidence 36788889999999999999988743211111111111 1 234667788999999943 22 2445667899999
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCCCCCCHHHHHHHHH-----H--cCCcEEEEeCCC
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVSKEEGEQFAK-----E--NGLLFLEASART 152 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~-----~--~~~~~~~~s~~~ 152 (211)
+++|.+=.-..+.+ .+++.+..+ +.| ++-|+++.|+.... -....+....+ + .++.+|.+|...
T Consensus 139 LlIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 139 LLIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred EEeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 99998654222222 344555554 555 66778999995422 22233322111 1 467777777543
No 374
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.40 E-value=3.5e-07 Score=65.30 Aligned_cols=59 Identities=24% Similarity=0.283 Sum_probs=33.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCC------CCCeeeEEEEEEEEECCEEEEEEEEeCCCcchh
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF 68 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 68 (211)
-.++++|++|||||||+|.|.+....... ....-.+.....+.+++.. .++||||...+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence 46899999999999999999987432211 1111122223334453322 58899996543
No 375
>PRK12288 GTPase RsgA; Reviewed
Probab=98.36 E-value=8.5e-07 Score=71.46 Aligned_cols=58 Identities=28% Similarity=0.437 Sum_probs=36.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCC----ee--eEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028283 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IG--VEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 69 (211)
++++|++|||||||+|+|++.........+ .| ++.....+.+.+.. .++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 789999999999999999976543211111 01 22223334444322 489999976544
No 376
>PRK14974 cell division protein FtsY; Provisional
Probab=98.36 E-value=3.9e-06 Score=67.24 Aligned_cols=96 Identities=14% Similarity=0.041 Sum_probs=55.8
Q ss_pred EEEEEEeCCCcchhhhc----hHHH--hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028283 55 IKLQIWDTAGQESFRSI----TRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
..+.|+||+|....... ...+ ....|.+++|+|+..... .+.. ...+... -..--+++||.|.....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~~~~-a~~f~~~---~~~~giIlTKlD~~~~~- 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--AVEQ-AREFNEA---VGIDGVILTKVDADAKG- 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--HHHH-HHHHHhc---CCCCEEEEeeecCCCCc-
Confidence 45889999996542221 1111 125788999999876432 1111 1222221 12357889999975322
Q ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028283 129 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
-.+...+...+.|+.+++ +|++++++...
T Consensus 296 ---G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 296 ---GAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred ---cHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 223344445688988887 78888776543
No 377
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.34 E-value=8.6e-05 Score=52.58 Aligned_cols=114 Identities=21% Similarity=0.228 Sum_probs=63.9
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCC-Ccc----------------
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA-GQE---------------- 66 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~-G~~---------------- 66 (211)
...++|.+-|+||+||||++.++.+.-....+... | +....+.-++...-+.+.|+. |..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg-G--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG-G--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceee-e--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 35689999999999999999988744322222211 1 122223455666667777766 311
Q ss_pred ---------hhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 028283 67 ---------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123 (211)
Q Consensus 67 ---------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 123 (211)
........++..+|++| +|=-.+-. .....+...+........|++.++++.+.
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpME-lks~~f~~~ve~vl~~~kpliatlHrrsr 142 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPME-LKSKKFREAVEEVLKSGKPLIATLHRRSR 142 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchh-hccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence 11112344445566554 45333211 11234445555555568898888887764
No 378
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=3.3e-06 Score=67.22 Aligned_cols=150 Identities=19% Similarity=0.235 Sum_probs=88.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-----------------------CCeeeEEEEEEEEECC---------
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-----------------------LTIGVEFGARMVTIDG--------- 52 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~--------- 52 (211)
..++++|+|...+|||||+--|..+..+...- ...|.+...+.+++..
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 45799999999999999987775443322110 1112222222222211
Q ss_pred -EEEEEEEEeCCCcchhhhchHHHhc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC
Q 028283 53 -RPIKLQIWDTAGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 53 -~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (211)
...-+.|+|.+|+..|......-+. ..|..++|++++....+. .++.+..+... ++|++++++|+|+.+..-+
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccccchhH
Confidence 1234789999999988874433332 366888889887754432 22333333333 8999999999999654111
Q ss_pred ------------------------CHHHHHHHHH----HcCCcEEEEeCCCCCCHHH
Q 028283 130 ------------------------SKEEGEQFAK----ENGLLFLEASARTAQNVEE 158 (211)
Q Consensus 130 ------------------------~~~~~~~~~~----~~~~~~~~~s~~~~~~i~~ 158 (211)
+..++..-+. ..-.|++.+|+.+|++++-
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~l 378 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRL 378 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhH
Confidence 1112222222 2234789999999998753
No 379
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.32 E-value=1.2e-05 Score=62.82 Aligned_cols=96 Identities=18% Similarity=0.071 Sum_probs=56.7
Q ss_pred EEEEEEEeCCCcchhhhchH-------HHh-----ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCC
Q 028283 54 PIKLQIWDTAGQESFRSITR-------SYY-----RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121 (211)
Q Consensus 54 ~~~~~l~D~~G~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 121 (211)
.+.+.++||||......... ... ...|.+++|+|++... ..+.. ...+.+.. .+.-+++||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~~f~~~~---~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AKVFNEAV---GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HHHHHhhC---CCCEEEEEcc
Confidence 35788999999754333211 111 2388999999997532 22222 12222211 2458889999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 122 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
|..... -.+.......+.|+.+++ +|++++++..
T Consensus 228 De~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 228 DGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred CCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 974321 234444556688988887 7777766543
No 380
>PRK12289 GTPase RsgA; Reviewed
Probab=98.31 E-value=1.1e-06 Score=70.80 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=35.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe----e--eEEEEEEEEECCEEEEEEEEeCCCcch
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI----G--VEFGARMVTIDGRPIKLQIWDTAGQES 67 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~l~D~~G~~~ 67 (211)
.++|+|++|||||||+|+|++.........+- | ++.....+.+.+.. .|+||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 37999999999999999999764332211110 0 22233334443322 5899999753
No 381
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.30 E-value=1.6e-06 Score=69.01 Aligned_cols=161 Identities=14% Similarity=0.113 Sum_probs=89.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCC------------------CCCCCCCCeeeEEEEE-----EEEE-----------
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKR------------------FQPVHDLTIGVEFGAR-----MVTI----------- 50 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~------------------~~~~~~~~~~~~~~~~-----~~~~----------- 50 (211)
..++|+|+|...+|||||+-.|..+. +......++|.++--- .++-
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 35799999999999999985553222 1222333333332111 0000
Q ss_pred ---CCEEEEEEEEeCCCcchhhhc--hHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028283 51 ---DGRPIKLQIWDTAGQESFRSI--TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 51 ---~~~~~~~~l~D~~G~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (211)
++....+.|+|.+|++.|... ....-+..|..++++-++.... ....+.+..... -.+|+++|++|+|+..
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi-GmTKEHLgLALa---L~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII-GMTKEHLGLALA---LHVPVFVVVTKIDMCP 287 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce-eccHHhhhhhhh---hcCcEEEEEEeeccCc
Confidence 112234789999999988763 2233456788888887765321 111111111122 2899999999999864
Q ss_pred CCCC--CHHHHHHH--------------------------HHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028283 126 RRAV--SKEEGEQF--------------------------AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 126 ~~~~--~~~~~~~~--------------------------~~~~~~~~~~~s~~~~~~i~~~~~~i~~~i~~~ 170 (211)
...+ ......++ ..+.-+++|.+|..+|.|+. ++..++..+.-+
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~-LLkmFLNlls~R 359 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP-LLKMFLNLLSLR 359 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH-HHHHHHhhcCcc
Confidence 3221 11111121 11222468999999999984 444555444333
No 382
>PRK01889 GTPase RsgA; Reviewed
Probab=98.28 E-value=3.5e-06 Score=68.31 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=57.8
Q ss_pred HhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHH-HcCCcEEEEeCCCC
Q 028283 75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTA 153 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~ 153 (211)
+..++|.+++|+++..+.....+..++..+... +.|.+||+||+|+.+... +....+.. ..+.+++.+|++++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g 182 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDG 182 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCC
Confidence 367899999999996444444555555554443 778899999999965311 11222222 35678999999999
Q ss_pred CCHHHHHHHHH
Q 028283 154 QNVEEAFIKTA 164 (211)
Q Consensus 154 ~~i~~~~~~i~ 164 (211)
.|++++..+|.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99988877763
No 383
>PRK13796 GTPase YqeH; Provisional
Probab=98.28 E-value=8.3e-06 Score=66.42 Aligned_cols=92 Identities=26% Similarity=0.328 Sum_probs=60.9
Q ss_pred hhhhchHHHhcccc-EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHH----HHHHc
Q 028283 67 SFRSITRSYYRGAA-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ----FAKEN 141 (211)
Q Consensus 67 ~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~~ 141 (211)
.+..... .+...+ .+++|+|+.|.. ..|...+.+... +.|+++|+||+|+... ....+.... +++..
T Consensus 58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLN-GIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHH-hhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 3444333 344455 899999998843 234444444332 7899999999999642 233333333 34455
Q ss_pred CC---cEEEEeCCCCCCHHHHHHHHHHH
Q 028283 142 GL---LFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 142 ~~---~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
++ .++.+||+++.|++++++.|.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 58999999999999999888654
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.23 E-value=2.1e-05 Score=64.81 Aligned_cols=86 Identities=9% Similarity=-0.028 Sum_probs=46.8
Q ss_pred EEEEEEEeCCCcchhhhc----hHHH--hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028283 54 PIKLQIWDTAGQESFRSI----TRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (211)
Q Consensus 54 ~~~~~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
.+.+.|+||||....... ...+ ....|-+++|+|+.-..... .....+... -.+--+++||.|.....
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~arg 255 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHAKG 255 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCCCc
Confidence 467899999996533321 1111 23467899999987542211 112222221 24568889999974321
Q ss_pred CCCHHHHHHHHHHcCCcEEEEe
Q 028283 128 AVSKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~s 149 (211)
-.+.......+.|+.+++
T Consensus 256 ----G~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 256 ----GGALSAVAATKSPIIFIG 273 (429)
T ss_pred ----cHHhhhHHHHCCCeEEEc
Confidence 112333444566655554
No 385
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.22 E-value=2.5e-06 Score=65.69 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=34.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCC------CeeeEEEEEEEEECCEEEEEEEEeCCCcch
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRPIKLQIWDTAGQES 67 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~ 67 (211)
.++++|++|||||||+|+|.+......... ..-++.....+.+.+. .++||||...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccc
Confidence 678999999999999999997643221110 0012222233444332 5899999754
No 386
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=1.2e-05 Score=73.21 Aligned_cols=115 Identities=25% Similarity=0.314 Sum_probs=64.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCc--------chhhhchHHH---
Q 028283 9 YIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQ--------ESFRSITRSY--- 75 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~--------~~~~~~~~~~--- 75 (211)
-+|+|++|+||||++..- +..+.- ......+..... +.+++ ...-.-.++||+|. +.....|..+
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~l 205 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGL 205 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHH
Confidence 378999999999987532 111111 000000000000 11111 01113458899992 1233345544
Q ss_pred ------hccccEEEEEEeCCCH------hH---HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028283 76 ------YRGAAGALLVYDITRR------ET---FNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 76 ------~~~~d~~i~v~d~~~~------~s---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (211)
.+..|++|+.+|+.+- +. ...++.-++++........|++|++||.|+..
T Consensus 206 Lkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 206 LKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 3678899999998652 11 12244445566666667999999999999854
No 387
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.17 E-value=4.9e-06 Score=67.63 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=39.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCC----CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchh
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ----PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF 68 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~ 68 (211)
.+++++|.+|||||||+|+|+..... .......+.+.....+.+++ .+.++||||....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCCCh
Confidence 47999999999999999999975321 11122234455555555533 2469999996543
No 388
>PRK13796 GTPase YqeH; Provisional
Probab=98.17 E-value=3.5e-06 Score=68.56 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=38.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCC----CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 66 (211)
.+++++|.+|||||||+|+|+...... ......|++.....+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 478999999999999999998643111 11122345555555555443 3699999974
No 389
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.13 E-value=8.5e-05 Score=59.27 Aligned_cols=89 Identities=16% Similarity=0.100 Sum_probs=52.3
Q ss_pred EEEEEEeCCCcchhhhchHHHhc--------cccEEEEEEeCCCHhHH-HHHHH-HHHHHHHhcCCCCeEEEEEeCCCCC
Q 028283 55 IKLQIWDTAGQESFRSITRSYYR--------GAAGALLVYDITRRETF-NHLSS-WLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (211)
....++++.|..........+.. ..|++|-|+|+..-... ..+.. ....+... =+|++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccCC
Confidence 45668888886655444444433 35689999998764322 21222 22222221 28999999997
Q ss_pred CCCCCCHHHHHHHHHHc--CCcEEEEeCC
Q 028283 125 HRRAVSKEEGEQFAKEN--GLLFLEASAR 151 (211)
Q Consensus 125 ~~~~~~~~~~~~~~~~~--~~~~~~~s~~ 151 (211)
++.. .+..+...+.. .++++.++..
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~ 185 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSYG 185 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEcccc
Confidence 7553 44555555554 4567877763
No 390
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=0.00014 Score=61.29 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=73.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCC---------CCC--------------CeeeEEEEEEEE------E-CCEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPV---------HDL--------------TIGVEFGARMVT------I-DGRPIK 56 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~---------~~~--------------~~~~~~~~~~~~------~-~~~~~~ 56 (211)
-.|+|+|+.|+||||++..|...-.... ... ..+..+....-. + .....+
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~D 430 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYK 430 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCC
Confidence 4788999999999999988864210000 000 001111100000 0 012467
Q ss_pred EEEEeCCCcchhhhchHH---Hh--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH
Q 028283 57 LQIWDTAGQESFRSITRS---YY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 131 (211)
Q Consensus 57 ~~l~D~~G~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 131 (211)
+.|+||+|.......... .+ ......++|++.... ...+...+..+.. ..+.-+|+||.|... ..
T Consensus 431 LVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~----~l 500 (559)
T PRK12727 431 LVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG----RF 500 (559)
T ss_pred EEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc----ch
Confidence 899999996433221110 01 112356777777642 2333333333332 246789999999732 23
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCCCH
Q 028283 132 EEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 132 ~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
-.+.......+.++..++ +|..+
T Consensus 501 G~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 501 GSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred hHHHHHHHHhCCCEEEEe--CCCCc
Confidence 455666667888877775 44555
No 391
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.08 E-value=6.7e-06 Score=64.13 Aligned_cols=59 Identities=22% Similarity=0.252 Sum_probs=35.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCC------CCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRF------QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 69 (211)
..+++|++|||||||+|+|....- +.......=++.....+.+++.. .+.||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 578999999999999999986322 11111111123333445564333 378999976444
No 392
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.08 E-value=0.00027 Score=57.40 Aligned_cols=138 Identities=19% Similarity=0.149 Sum_probs=74.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe---eeEEEEE-----------------EEEE----------CCEEE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI---GVEFGAR-----------------MVTI----------DGRPI 55 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~-----------------~~~~----------~~~~~ 55 (211)
.=.|++|||.||||||-+-+|...-........+ +.+.+-. .... .-...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 3468999999999999988876443211111111 1111100 0000 11335
Q ss_pred EEEEEeCCCcchhhh----chHHHhccc--cEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeE-EEEEeCCCCCCCCC
Q 028283 56 KLQIWDTAGQESFRS----ITRSYYRGA--AGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAHRRA 128 (211)
Q Consensus 56 ~~~l~D~~G~~~~~~----~~~~~~~~~--d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~ 128 (211)
++.|+||.|...++. ....++..+ .-+.+|++++... ..+...+..+. ..|+ -++++|.|-..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~-----~~~i~~~I~TKlDET~--- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFS-----LFPIDGLIFTKLDETT--- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhc-----cCCcceeEEEcccccC---
Confidence 789999999665443 333344333 2456677776642 33444444433 2332 56789999532
Q ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028283 129 VSKEEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
+.-.......+.+.|+-.++ +|.+|
T Consensus 353 -s~G~~~s~~~e~~~PV~YvT--~GQ~V 377 (407)
T COG1419 353 -SLGNLFSLMYETRLPVSYVT--NGQRV 377 (407)
T ss_pred -chhHHHHHHHHhCCCeEEEe--CCCCC
Confidence 33455666667777765554 44444
No 393
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=1.8e-05 Score=60.70 Aligned_cols=60 Identities=25% Similarity=0.438 Sum_probs=43.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC----CCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----HDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G 64 (211)
..++|+-+|..|.||||||+.|.+-.+... ..+.+..........-.+..+.+.++||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 568999999999999999999998877543 223333333333333356667889999999
No 394
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.06 E-value=0.00014 Score=58.11 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=47.7
Q ss_pred EEEEEEeCCCcchhhhchHHHhc--------cccEEEEEEeCCCHhHH-HHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028283 55 IKLQIWDTAGQESFRSITRSYYR--------GAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (211)
....++++.|......+...++. ..+++|.|+|+.+.... .........+... =+|++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~A------D~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYA------DRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhC------CEEEEeccccCC
Confidence 45678899997766655544432 24789999998653221 1111112222221 289999999875
Q ss_pred CCCCCHHHHHHHHHHc--CCcEEEEe
Q 028283 126 RRAVSKEEGEQFAKEN--GLLFLEAS 149 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~--~~~~~~~s 149 (211)
.. +..++..+.. .++++.++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec
Confidence 31 3444555443 34566544
No 395
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.05 E-value=9.7e-06 Score=63.91 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=37.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC------CeeeEEEEEEEEECCEEEEEEEEeCCCcchhh
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~ 69 (211)
-.++++|++|+|||||+|.|.+......... ...++.....+.+.+. ..++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 4689999999999999999997654322111 1112333333444422 2589999986543
No 396
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.03 E-value=1.5e-05 Score=58.77 Aligned_cols=70 Identities=16% Similarity=0.134 Sum_probs=39.7
Q ss_pred EEEEEeCCCcchhhhc---hHHHh---cccc---EEEEEEeCCC-HhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028283 56 KLQIWDTAGQESFRSI---TRSYY---RGAA---GALLVYDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 56 ~~~l~D~~G~~~~~~~---~~~~~---~~~d---~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (211)
.+.++|+||+.+.... .+.+. ..-+ .++|++|..= -++...+...+..+.....-.+|.|=|++|+|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 4679999998765442 22222 1111 4666666432 12333344444444443334899999999999843
No 397
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=9.9e-05 Score=59.97 Aligned_cols=138 Identities=17% Similarity=0.116 Sum_probs=71.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCC-C--CCCCeeeEEE----------------EEEEEE-----------CCEEE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-V--HDLTIGVEFG----------------ARMVTI-----------DGRPI 55 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~-~--~~~~~~~~~~----------------~~~~~~-----------~~~~~ 55 (211)
.-.++++|++|+||||++.+|...-... . ....++.+.+ ...... .....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3468899999999999999986432100 0 0000000000 000001 01234
Q ss_pred EEEEEeCCCcchhhhch---HHHhcc---ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcC-CC----CeEEEEEeCCCCC
Q 028283 56 KLQIWDTAGQESFRSIT---RSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHAN-PN----MSIMLVGNKCDLA 124 (211)
Q Consensus 56 ~~~l~D~~G~~~~~~~~---~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~----~p~ivv~nK~D~~ 124 (211)
.+.++||+|........ ...+.. ..-.++|++++... ..+...+..+..... +. -+--++++|.|-.
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 68899999965433221 111222 33568899987632 222222223322210 00 1346778999964
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEe
Q 028283 125 HRRAVSKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~s 149 (211)
. ..-.+.......+.|+..++
T Consensus 295 ~----~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 295 S----NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred C----CccHHHHHHHHHCcCeEEEe
Confidence 3 23445566677788876665
No 398
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.99 E-value=0.00023 Score=58.77 Aligned_cols=138 Identities=18% Similarity=0.121 Sum_probs=73.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe-----------------------eeEEEEEEE--E-----ECCEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-----------------------GVEFGARMV--T-----IDGRPIK 56 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-----------------------~~~~~~~~~--~-----~~~~~~~ 56 (211)
-.|+++|++|+||||++..|.+........... +.......- . ..-....
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d 271 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH 271 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence 479999999999999999886531100000000 000000000 0 0012245
Q ss_pred EEEEeCCCcchhhh----chHHHh--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC
Q 028283 57 LQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 130 (211)
Q Consensus 57 ~~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 130 (211)
+.++||+|...... ....+. ...+-.++|+|++... ..+..+...+.. --+--+++||.|-.. .
T Consensus 272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~----~~~~~~I~TKlDEt~----~ 341 (420)
T PRK14721 272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQG----HGIHGCIITKVDEAA----S 341 (420)
T ss_pred EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcC----CCCCEEEEEeeeCCC----C
Confidence 78999999554222 222221 2234678899987532 223333333221 223467899999643 2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028283 131 KEEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
.-.+...+...+.++..++ +|.++
T Consensus 342 ~G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 342 LGIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred ccHHHHHHHHhCCCEEEEE--CCCCc
Confidence 2445566777888877775 45555
No 399
>PRK00098 GTPase RsgA; Reviewed
Probab=97.98 E-value=1.5e-05 Score=63.15 Aligned_cols=57 Identities=25% Similarity=0.328 Sum_probs=35.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC----ee--eEEEEEEEEECCEEEEEEEEeCCCcch
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IG--VEFGARMVTIDGRPIKLQIWDTAGQES 67 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~l~D~~G~~~ 67 (211)
.++++|++|+|||||+|.|++.......... .| ++.....+.+++. ..++||||...
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 5889999999999999999976432211111 01 1222233334332 36899999753
No 400
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=5.1e-05 Score=57.43 Aligned_cols=118 Identities=15% Similarity=0.218 Sum_probs=72.6
Q ss_pred eeeEEEEcCCCC--CHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEE
Q 028283 6 LFKYIIIGDTGV--GKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 6 ~~~I~v~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
++-++|+|..|+ ||.+|+++|....+.........+.+...++.-......+.+.-.+--+.+.--.....+...+++
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCcccccceeeEE
Confidence 456889999999 999999999988887766665555555544432222222333222221111111112234456899
Q ss_pred EEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028283 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (211)
+|||++....+..+..|+....... =--++.++||.|...
T Consensus 84 mvfdlse~s~l~alqdwl~htdins--fdillcignkvdrvp 123 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDINS--FDILLCIGNKVDRVP 123 (418)
T ss_pred EEEeccchhhhHHHHhhcccccccc--chhheeccccccccc
Confidence 9999999999999999975432211 112356689999754
No 401
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.97 E-value=9.4e-06 Score=67.00 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=43.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~ 66 (211)
.+.|.+||.|+|||||+||.|.+.+... ...|.|-+....++.+.. .+.|.|+||.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVs-VS~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVS-VSSTPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceee-eecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 6899999999999999999999988533 233446666666666554 35789999943
No 402
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.96 E-value=0.0001 Score=53.65 Aligned_cols=83 Identities=16% Similarity=0.050 Sum_probs=45.6
Q ss_pred EEEEEEeCCCcchhhh----chHHHh--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028283 55 IKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
..+.+.|++|...... ....+. ...+.+++|+|...... ...+...+.+.. + ...++.||.|.....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~~- 155 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDARG- 155 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCCc-
Confidence 4578899999743221 111122 24889999999865432 122333332222 2 356778999975422
Q ss_pred CCHHHHHHHHHHcCCcEEE
Q 028283 129 VSKEEGEQFAKENGLLFLE 147 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~ 147 (211)
..+...+...+.|+..
T Consensus 156 ---g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 156 ---GAALSIRAVTGKPIKF 171 (173)
T ss_pred ---chhhhhHHHHCcCeEe
Confidence 2223355566666543
No 403
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.95 E-value=2.4e-05 Score=57.32 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=41.4
Q ss_pred EEEEEEeCCCcchhhhc-----hHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC
Q 028283 55 IKLQIWDTAGQESFRSI-----TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~~-----~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (211)
....++++.|......+ .....-..+.+|.|+|+.+-.....+...+....+.. =++++||+|+.+.. .
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A-----DvIvlnK~D~~~~~-~ 158 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA-----DVIVLNKIDLVSDE-Q 158 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT------SEEEEE-GGGHHHH--
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc-----CEEEEeccccCChh-h
Confidence 45677888885544443 1111234678999999976432333333222222222 28999999986533 1
Q ss_pred CHHHHHHHHHH
Q 028283 130 SKEEGEQFAKE 140 (211)
Q Consensus 130 ~~~~~~~~~~~ 140 (211)
..+..++..++
T Consensus 159 ~i~~~~~~ir~ 169 (178)
T PF02492_consen 159 KIERVREMIRE 169 (178)
T ss_dssp -HHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 22444444444
No 404
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.94 E-value=6.3e-05 Score=58.79 Aligned_cols=92 Identities=22% Similarity=0.190 Sum_probs=65.5
Q ss_pred chHHHhccccEEEEEEeCCCHh-HHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Q 028283 71 ITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (211)
+..-...+.|-+|+|+.+.+|+ +...+..++-.... .++..+|++||+|+.++.....++........+.+++.+|
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s 148 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVS 148 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEec
Confidence 4444455688888999988875 34444444333333 3777888899999977554433456667778999999999
Q ss_pred CCCCCCHHHHHHHHHH
Q 028283 150 ARTAQNVEEAFIKTAA 165 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~~ 165 (211)
+++++++.++.+.+..
T Consensus 149 ~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 149 AKNGDGLEELAELLAG 164 (301)
T ss_pred CcCcccHHHHHHHhcC
Confidence 9999999888766643
No 405
>PRK13695 putative NTPase; Provisional
Probab=97.91 E-value=0.00047 Score=50.22 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~ 28 (211)
++|++.|++|+|||||++.+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998654
No 406
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.91 E-value=0.00015 Score=52.60 Aligned_cols=135 Identities=22% Similarity=0.257 Sum_probs=64.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeC-CCc---------------------
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT-AGQ--------------------- 65 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~G~--------------------- 65 (211)
+|.+.|++|+|||||+++++..-.... .+..|.-. ..+.-++...-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~v~Gf~t--~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG-LPVGGFYT--EEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC-GGEEEEEE--EEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC-CccceEEe--ecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 689999999999999999874421111 11112111 11223444444455554 221
Q ss_pred -chhhh----chHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCC-CCCCCCCCCHHHHHHHHH
Q 028283 66 -ESFRS----ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC-DLAHRRAVSKEEGEQFAK 139 (211)
Q Consensus 66 -~~~~~----~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~~ 139 (211)
+.+.. .....+..+| ++|+|=--+-. .....|.+.+......++|++.++.+. +. .....+..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mE-l~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKME-LKSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTC-CC-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhh-hcCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence 11111 1222224445 67777221100 011234445544444588988888777 32 12445555
Q ss_pred HcCCcEEEEeCCCCCCH
Q 028283 140 ENGLLFLEASARTAQNV 156 (211)
Q Consensus 140 ~~~~~~~~~s~~~~~~i 156 (211)
..++.++.++..+.+.+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 67788898877665544
No 407
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=0.00019 Score=58.47 Aligned_cols=139 Identities=19% Similarity=0.113 Sum_probs=74.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCC----------CC-C----------CeeeEEEEEEE--E----E---C-CEE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------HD-L----------TIGVEFGARMV--T----I---D-GRP 54 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~~~----------~~-~----------~~~~~~~~~~~--~----~---~-~~~ 54 (211)
.-.|+++|++|+||||++..|...-.... +. . ..+..+....- . + . ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 35799999999999999999853211000 00 0 00111110000 0 0 0 113
Q ss_pred EEEEEEeCCCcchhhh----chHHHh--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028283 55 IKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
..+.|+||+|...... ....++ ...+.+++|+|++-.. ..+......+.. -..--++++|.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~----~~idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC----CCCCEEEEEcccCCC---
Confidence 5789999999654222 122222 2356788999875432 222333333332 123467889999744
Q ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028283 129 VSKEEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
..-.+...+...+.|+..++ +|+++
T Consensus 392 -k~G~iLni~~~~~lPIsyit--~GQ~V 416 (436)
T PRK11889 392 -SSGELLKIPAVSSAPIVLMT--DGQDV 416 (436)
T ss_pred -CccHHHHHHHHHCcCEEEEe--CCCCC
Confidence 22345566667788877665 44444
No 408
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.85 E-value=0.00024 Score=50.40 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=36.1
Q ss_pred EEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028283 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (211)
Q Consensus 54 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (211)
.+.+.|+||+|.. .....++..+|.+|+|....-.+.+.-+ .. ..+ ..--++++||.|
T Consensus 91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~-k~-~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAI-KA-GIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHh-hh-hHh------hhcCEEEEeCCC
Confidence 4678899999964 2234588899999999887632221111 11 122 222388999987
No 409
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.82 E-value=0.0002 Score=53.20 Aligned_cols=90 Identities=21% Similarity=0.087 Sum_probs=51.3
Q ss_pred EEEEEEeCCCcchhhh----chHHHh--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028283 55 IKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
..+.++||||...... ....++ ...+-+++|++++.... .+... ..+.... + +--++++|.|-..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~-~~~~~~~--~-~~~lIlTKlDet~--- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQA-LAFYEAF--G-IDGLILTKLDETA--- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHH-HHHHHHS--S-TCEEEEESTTSSS---
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHH-HHHhhcc--c-CceEEEEeecCCC---
Confidence 4588999999554332 111221 25678999999877532 22222 2222221 1 2356799999643
Q ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028283 129 VSKEEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
..-.+-..+...+.|+-.++ +|+++
T Consensus 155 -~~G~~l~~~~~~~~Pi~~it--~Gq~V 179 (196)
T PF00448_consen 155 -RLGALLSLAYESGLPISYIT--TGQRV 179 (196)
T ss_dssp -TTHHHHHHHHHHTSEEEEEE--SSSST
T ss_pred -CcccceeHHHHhCCCeEEEE--CCCCh
Confidence 22446667777888887776 44555
No 410
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.0002 Score=63.01 Aligned_cols=139 Identities=19% Similarity=0.103 Sum_probs=73.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe-----------------------eeEEEEEEEEE--------CCEEEE
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-----------------------GVEFGARMVTI--------DGRPIK 56 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~~--------~~~~~~ 56 (211)
-|+++|++|+||||++.+|...-........+ +....... .. ......
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~-~~~~l~~al~~~~~~D 265 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK-DAADLRFALAALGDKH 265 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC-CHHHHHHHHHHhcCCC
Confidence 57999999999999999987432100000000 11110000 00 012346
Q ss_pred EEEEeCCCcchhhh----chHHH--hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCC
Q 028283 57 LQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 130 (211)
Q Consensus 57 ~~l~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 130 (211)
+.|+||+|...... ....+ ....+-+++|+|++.. .+.+......+..... --+--+|++|.|-.. .
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~-~~i~glIlTKLDEt~----~ 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAG-EDVDGCIITKLDEAT----H 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhccc-CCCCEEEEeccCCCC----C
Confidence 88999999433222 11111 1234568899998753 1223333333322110 023467899999643 2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028283 131 KEEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
.-.+..+....+.|+.+++ +|++|
T Consensus 339 ~G~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 339 LGPALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred ccHHHHHHHHHCCCeEEEe--cCCCC
Confidence 2345566677788877775 55566
No 411
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.79 E-value=5.6e-05 Score=62.75 Aligned_cols=83 Identities=17% Similarity=0.069 Sum_probs=47.0
Q ss_pred EEEEEeCCCcchhhhc----hH--HHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCC-eEEEEEeCCCCCCCCC
Q 028283 56 KLQIWDTAGQESFRSI----TR--SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-SIMLVGNKCDLAHRRA 128 (211)
Q Consensus 56 ~~~l~D~~G~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~ 128 (211)
.+.|+||||....... .. ...-.+|.+++|+|++... +.+ .....+.. .. ..-+|+||.|....
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av-~~a~~F~~----~l~i~gvIlTKlD~~a~-- 247 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAK-NQAKAFHE----AVGIGGIIITKLDGTAK-- 247 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHH-HHHHHHHh----cCCCCEEEEecccCCCc--
Confidence 6899999996543321 11 1233678999999987642 112 22222222 22 24678899996431
Q ss_pred CCHHHHHHHHHHcCCcEEEEe
Q 028283 129 VSKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s 149 (211)
.-.+.......+.|+.+++
T Consensus 248 --~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 248 --GGGALSAVAETGAPIKFIG 266 (437)
T ss_pred --ccHHHHHHHHHCcCEEEEe
Confidence 1234445555677766665
No 412
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.77 E-value=0.00045 Score=50.48 Aligned_cols=87 Identities=15% Similarity=0.045 Sum_probs=46.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEe--CC-CcchhhhchHHHhccccEEEE
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD--TA-GQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D--~~-G~~~~~~~~~~~~~~~d~~i~ 84 (211)
.++++|++|+|||||++.+.+...... | .+.+++..+.+..-+ .. |+...-.+...++...+.+++
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~-----G------~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNG-----D------NDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCC-----c------EEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 688999999999999999986542211 1 122333322211111 22 333333456666666665554
Q ss_pred --EEeCCCHhHHHHHHHHHHHHH
Q 028283 85 --VYDITRRETFNHLSSWLEDAR 105 (211)
Q Consensus 85 --v~d~~~~~s~~~~~~~~~~~~ 105 (211)
-.+.-|+.+...+..++..+.
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHH
Confidence 122334555555555555543
No 413
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.77 E-value=0.0006 Score=57.28 Aligned_cols=103 Identities=17% Similarity=0.093 Sum_probs=54.9
Q ss_pred EEEEEeCCCcchhhh---chHHHhcc---ccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC
Q 028283 56 KLQIWDTAGQESFRS---ITRSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 56 ~~~l~D~~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (211)
.+.++||+|...... .....+.. ..-.++|+|.+... ..+.+....+ .. ....-+++||.|-..
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~~~f---~~-~~~~g~IlTKlDet~---- 405 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVVQAY---RG-PGLAGCILTKLDEAA---- 405 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHHHHh---cc-CCCCEEEEeCCCCcc----
Confidence 578999999443222 11112221 22367888886532 2222222222 21 223467789999643
Q ss_pred CHHHHHHHHHHcCCcEEEEeCCCCCCH-HHHHH----HHHHHHHHH
Q 028283 130 SKEEGEQFAKENGLLFLEASARTAQNV-EEAFI----KTAAKILQN 170 (211)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~s~~~~~~i-~~~~~----~i~~~i~~~ 170 (211)
..-.+..+....++++..++ +|++| +++.. .+++.++..
T Consensus 406 ~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~~ 449 (484)
T PRK06995 406 SLGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAFCA 449 (484)
T ss_pred cchHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHhcC
Confidence 23456667777888877775 55666 44332 344555443
No 414
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=0.00014 Score=60.32 Aligned_cols=129 Identities=22% Similarity=0.248 Sum_probs=83.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCC------------CCC--CCCCeeeEEEEEEEEE----------------CCEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF------------QPV--HDLTIGVEFGARMVTI----------------DGRP 54 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~------------~~~--~~~~~~~~~~~~~~~~----------------~~~~ 54 (211)
+.-++-|+.+..-|||||...|..... ... .....++++....+.+ ++..
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 344677888999999999999863321 111 1112234444433333 3456
Q ss_pred EEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC-CCCCCCHHH
Q 028283 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA-HRRAVSKEE 133 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~ 133 (211)
+.++++|.||+-.+.+...+.++-.|+.++|+|..+..-.+...-+.+.+.+ ++.-+++.||.|.. -+-+++.++
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~Ee 173 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQEE 173 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHHH
Confidence 7899999999999999999999999999999999875332222233334433 34457789999963 133455555
Q ss_pred HHHH
Q 028283 134 GEQF 137 (211)
Q Consensus 134 ~~~~ 137 (211)
.-+.
T Consensus 174 Lyqt 177 (842)
T KOG0469|consen 174 LYQT 177 (842)
T ss_pred HHHH
Confidence 4443
No 415
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.74 E-value=0.0002 Score=41.58 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=29.1
Q ss_pred HHhccccEEEEEEeCCCHh--HHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028283 74 SYYRGAAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (211)
+.-+-.++++|++|++... +.+.-...+..++.... ++|+++|.||+|
T Consensus 9 AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 9 ALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred HHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 3445677999999999843 44444455666666654 899999999998
No 416
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.73 E-value=0.00076 Score=56.07 Aligned_cols=90 Identities=19% Similarity=0.112 Sum_probs=52.3
Q ss_pred EEEEEEeCCCcchhh----hchHHHhc---cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCC
Q 028283 55 IKLQIWDTAGQESFR----SITRSYYR---GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 127 (211)
..+.|+||||..... .....++. ...-+++|++++-.. ..+...+..+... + +.-+++||.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence 578999999965332 12333333 234667888876532 2333333333211 2 2368899999743
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028283 128 AVSKEEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
..-.+.......+.++..++ +|.++
T Consensus 372 --~~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 22356677778888877775 45554
No 417
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.68 E-value=0.00025 Score=49.67 Aligned_cols=106 Identities=11% Similarity=0.131 Sum_probs=61.0
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCC
Q 028283 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 90 (211)
Q Consensus 11 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 90 (211)
.-|..|+|||++--.+...-. .......-.+.... .....+.+.++|+|+.. .......+..+|.++++++.+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~~---~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALA-KLGKRVLLLDADLG---LANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCCC---CCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence 457889999998665542211 01011100110000 00111578899999754 3334567889999999999864
Q ss_pred HhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 028283 91 RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 91 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 124 (211)
.++..+...++.+.... ...++.+++|+.+..
T Consensus 79 -~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 -TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred -hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 34444445555554433 356788999999753
No 418
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.68 E-value=0.0032 Score=45.27 Aligned_cols=143 Identities=8% Similarity=0.014 Sum_probs=91.6
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhcccc
Q 028283 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|+......|++||..+.++..|...+..... +....+... + .+-+ | .+.... =+..|
T Consensus 10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~--------~~~l~Vh~a-----~---sLPL-p--~e~~~l----RprID 66 (176)
T PF11111_consen 10 LPELNTATILLVGTEEALLQQLAEAMLEEDK--------EFKLKVHLA-----K---SLPL-P--SENNNL----RPRID 66 (176)
T ss_pred CCCcceeEEEEecccHHHHHHHHHHHHhhcc--------ceeEEEEEe-----c---cCCC-c--ccccCC----CceeE
Confidence 4556788999999999999999999985321 111111110 0 0111 1 111111 23689
Q ss_pred EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028283 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
.++|++|.....++..++.-+..+....-.++-++++.|-.. .+.-.+...+..+++..++.+++.+.-...++...+-
T Consensus 67 lIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~-~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lA 145 (176)
T PF11111_consen 67 LIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGR-ESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLA 145 (176)
T ss_pred EEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCc-ccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHH
Confidence 999999999999988887766665443323555555544443 3434577899999999999999999888776655544
Q ss_pred HHHHHHH
Q 028283 161 IKTAAKI 167 (211)
Q Consensus 161 ~~i~~~i 167 (211)
+.|++.+
T Consensus 146 qRLL~~l 152 (176)
T PF11111_consen 146 QRLLRML 152 (176)
T ss_pred HHHHHHH
Confidence 4444443
No 419
>PRK10867 signal recognition particle protein; Provisional
Probab=97.65 E-value=0.00054 Score=56.91 Aligned_cols=86 Identities=15% Similarity=0.029 Sum_probs=47.1
Q ss_pred EEEEEEeCCCcchhhh----chHHH--hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028283 55 IKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
+.+.|+||||...... ....+ .-..+.+++|+|+.... ........+.... ...-+|+||.|-....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~rg- 256 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDARG- 256 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCcccc-
Confidence 5689999999543221 11111 12567889999986532 2222223332211 1236777999963321
Q ss_pred CCHHHHHHHHHHcCCcEEEEeC
Q 028283 129 VSKEEGEQFAKENGLLFLEASA 150 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s~ 150 (211)
-.+.......+.|+.++..
T Consensus 257 ---G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 257 ---GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ---cHHHHHHHHHCcCEEEEeC
Confidence 2255556667788766653
No 420
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.64 E-value=0.00065 Score=43.84 Aligned_cols=69 Identities=19% Similarity=0.193 Sum_probs=45.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhc-hHHHhccccEEEEEEe
Q 028283 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYD 87 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-~~~~~~~~d~~i~v~d 87 (211)
+++.|..|+||||+...+...-..... +...++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~----------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK----------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC----------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 678899999999998887643221110 112222 6789999986533321 2456668899999998
Q ss_pred CCCH
Q 028283 88 ITRR 91 (211)
Q Consensus 88 ~~~~ 91 (211)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 8664
No 421
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.64 E-value=0.00066 Score=44.87 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=49.7
Q ss_pred EEEEc-CCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEe
Q 028283 9 YIIIG-DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 9 I~v~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
|.+.| ..|+||||+...+...-.. ...+. ..+..+.. +.+.++|+|+..... ....+..+|.+|++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~v-------l~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRV-------LLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcE-------EEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56667 5689999987766532211 11111 11222221 678899999865333 3367788999999998
Q ss_pred CCCHhHHHHHHHHHH
Q 028283 88 ITRRETFNHLSSWLE 102 (211)
Q Consensus 88 ~~~~~s~~~~~~~~~ 102 (211)
.+. .++..+..+++
T Consensus 71 ~~~-~s~~~~~~~~~ 84 (104)
T cd02042 71 PSP-LDLDGLEKLLE 84 (104)
T ss_pred CCH-HHHHHHHHHHH
Confidence 754 45555555544
No 422
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.00087 Score=55.20 Aligned_cols=133 Identities=23% Similarity=0.184 Sum_probs=69.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC-CCCC-------CC--------------CCeeeEEEEEE-E-----EECCEEEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKR-FQPV-------HD--------------LTIGVEFGARM-V-----TIDGRPIKLQ 58 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~-~~~~-------~~--------------~~~~~~~~~~~-~-----~~~~~~~~~~ 58 (211)
.-|+++|++|+||||++..|.... .... .. ...+....... . .+......+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999886421 0000 00 00011111000 0 0011245678
Q ss_pred EEeCCCcchhhh----chHHHhc-----cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCC
Q 028283 59 IWDTAGQESFRS----ITRSYYR-----GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 59 l~D~~G~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 129 (211)
++||||...... .+..++. ...-.++|+|++... ..+......+.. --+--++++|.|-...
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~----~~~~glIlTKLDEt~~--- 374 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES----LNYRRILLTKLDEADF--- 374 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC----CCCCEEEEEcccCCCC---
Confidence 999999652211 2222222 233688899987642 222333222211 2234678999996431
Q ss_pred CHHHHHHHHHHcCCcEEEEe
Q 028283 130 SKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~s 149 (211)
.-.+...+...+.|+..++
T Consensus 375 -~G~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 375 -LGSFLELADTYSKSFTYLS 393 (432)
T ss_pred -ccHHHHHHHHHCCCEEEEe
Confidence 2335556667788876665
No 423
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.57 E-value=0.0016 Score=54.18 Aligned_cols=86 Identities=16% Similarity=0.033 Sum_probs=48.6
Q ss_pred EEEEEEeCCCcchhhh----chHHH--hccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028283 55 IKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
+.+.|+||||...... ....+ .-..|.+++|+|+.... ....+...+.... ...-++.||.|-...
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~~-- 254 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDAR-- 254 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCccc--
Confidence 5688999999543222 11111 23477899999987542 2222323333221 224677999996331
Q ss_pred CCHHHHHHHHHHcCCcEEEEeC
Q 028283 129 VSKEEGEQFAKENGLLFLEASA 150 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s~ 150 (211)
.-.+...+...+.|+.++..
T Consensus 255 --~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 255 --GGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred --ccHHHHHHHHHCcCEEEEeC
Confidence 12255666667888766653
No 424
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.56 E-value=7.4e-05 Score=60.04 Aligned_cols=57 Identities=26% Similarity=0.351 Sum_probs=44.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 65 (211)
..+++.|+|-|++||||+||+|........ -...|++.....+.++. .+.|.|.||.
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCce
Confidence 568999999999999999999998876433 33337777766666654 4678999994
No 425
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.52 E-value=0.0018 Score=52.30 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~ 29 (211)
-.+|.|.-|+|||||+++++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4678899999999999999854
No 426
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.0041 Score=51.04 Aligned_cols=139 Identities=14% Similarity=0.079 Sum_probs=74.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCC----CCCC---------------------CCeeeEEEEEEEE-------ECCE
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ----PVHD---------------------LTIGVEFGARMVT-------IDGR 53 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~~----~~~~---------------------~~~~~~~~~~~~~-------~~~~ 53 (211)
.-.|+++|++|+||||.+..|...-.. .... ...+..+...... -.-.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 457899999999999999887532100 0000 0001111111000 0112
Q ss_pred EEEEEEEeCCCcchhhh----chHHHhccc--c-EEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCC
Q 028283 54 PIKLQIWDTAGQESFRS----ITRSYYRGA--A-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 54 ~~~~~l~D~~G~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 126 (211)
...+.++||+|...... ....++... + -.++|+|++... ..+...+..+.. --+--++++|.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~----~~~~~~I~TKlDet~- 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP----FSYKTVIFTKLDETT- 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC----CCCCEEEEEeccCCC-
Confidence 45789999999653221 122233322 3 588999997752 233333333321 124478899999643
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028283 127 RAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
..-.+..++...+.|+..++ +|+++
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence 22345566667788876665 45566
No 427
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.49 E-value=0.0011 Score=45.88 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCC
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~~ 31 (211)
...+++.|++|+|||++++.+...-.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 35689999999999999999986653
No 428
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.47 E-value=0.00065 Score=51.15 Aligned_cols=60 Identities=30% Similarity=0.315 Sum_probs=37.3
Q ss_pred EEEEeC-CCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCC-CeEEEEEeCCCC
Q 028283 57 LQIWDT-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKCDL 123 (211)
Q Consensus 57 ~~l~D~-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~ 123 (211)
+.++|| +|.+.+. ......+|.+|.|+|.+-. ++.......+..... + .++.+|+||.|-
T Consensus 136 ~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~taeri~~L~~el---g~k~i~~V~NKv~e 197 (255)
T COG3640 136 VVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEEL---GIKRIFVVLNKVDE 197 (255)
T ss_pred EEEEecccchhhhc---cccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHh---CCceEEEEEeeccc
Confidence 556665 3444333 3445689999999998753 333333332222222 5 889999999995
No 429
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.44 E-value=0.0027 Score=49.53 Aligned_cols=138 Identities=18% Similarity=0.108 Sum_probs=74.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCC-----------C----------CCCCeeeEEEEEEEE----------E-CCEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-----------V----------HDLTIGVEFGARMVT----------I-DGRP 54 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~-----------~----------~~~~~~~~~~~~~~~----------~-~~~~ 54 (211)
-+++++|++|+||||++..+...-... . +....+..+... .. + ....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence 589999999999999998875331100 0 000011111110 00 0 1124
Q ss_pred EEEEEEeCCCcchhhh----chHHHh--ccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028283 55 IKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
+.+.++||||...... .+..++ ...+-+++|+|++... ..+..+...+.. -.+--++++|.|-...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~~-- 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETAS-- 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCCC--
Confidence 5789999999653222 122222 2456789999986421 222333333322 2334778999997442
Q ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028283 129 VSKEEGEQFAKENGLLFLEASARTAQNVE 157 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 157 (211)
.-.+-..+...+.|+..++ +|+++.
T Consensus 227 --~G~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 227 --SGELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred --ccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 2334556666788877775 444443
No 430
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0012 Score=53.70 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=49.5
Q ss_pred EEEEEEeCCCcchhhh----chHHHhc--cccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCC
Q 028283 55 IKLQIWDTAGQESFRS----ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 128 (211)
..+.|+||||...... ....+.. ..+.+++|.++... ...+...+..+ . .-.+--+++||.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f---~-~l~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKL---A-EIPIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhc---C-cCCCCEEEEEcccCCC---
Confidence 5789999999743322 1222222 34566777776432 12222222222 1 1223467799999643
Q ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028283 129 VSKEEGEQFAKENGLLFLEASARTAQNVE 157 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 157 (211)
..-.+...+...+.|+..++ +|+++.
T Consensus 357 -~~G~~Lsv~~~tglPIsylt--~GQ~Vp 382 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMT--DGQNIT 382 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEe--cCCCCC
Confidence 22345566677888877776 344443
No 431
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.00019 Score=57.86 Aligned_cols=155 Identities=20% Similarity=0.121 Sum_probs=91.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCC-------------------CCCCCCC----------CeeeEEEEEEEEECCEEE
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKR-------------------FQPVHDL----------TIGVEFGARMVTIDGRPI 55 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~-------------------~~~~~~~----------~~~~~~~~~~~~~~~~~~ 55 (211)
..++++++|+..+||||+-..++... ...+|.. .-|.+.......+.-...
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~ 157 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENK 157 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecce
Confidence 46899999999999999865542110 0001100 112233333333444456
Q ss_pred EEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHh---HHHHHHHHH--HHHHHhcCCCCeEEEEEeCCCCCCCCCCC
Q 028283 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLSSWL--EDARQHANPNMSIMLVGNKCDLAHRRAVS 130 (211)
Q Consensus 56 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~--~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 130 (211)
++.+.|+||+..|-.....-..++|..++|+++...+ .|+.=.+.. ..+.... .-...++++||+|-+.- .++
T Consensus 158 ~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPtv-nWs 235 (501)
T KOG0459|consen 158 RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPTV-NWS 235 (501)
T ss_pred eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCcc-Ccc
Confidence 7889999999988887777788999999999985422 121111111 1111111 24668888999997532 122
Q ss_pred H---HH----HHHHHHHcC------CcEEEEeCCCCCCHHHHHH
Q 028283 131 K---EE----GEQFAKENG------LLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 131 ~---~~----~~~~~~~~~------~~~~~~s~~~~~~i~~~~~ 161 (211)
. ++ ...|....+ ..++++|..+|.++.+-..
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1 22 223333332 3489999999999877653
No 432
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.42 E-value=0.0031 Score=44.44 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999998654
No 433
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.32 E-value=0.00027 Score=41.99 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028283 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~ 28 (211)
..+|.|+.|+|||||+.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998763
No 434
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.30 E-value=0.00024 Score=48.31 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~ 29 (211)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999854
No 435
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.30 E-value=0.0019 Score=42.98 Aligned_cols=100 Identities=16% Similarity=0.071 Sum_probs=57.6
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCH
Q 028283 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 91 (211)
Q Consensus 12 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 91 (211)
=+..|+||||+...|...-.........-.+ ....... .+.++|+|+..... ....+..+|.+|++++.+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d-----~d~~~~~-D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~- 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVD-----LDLQFGD-DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDL- 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEE-----CCCCCCC-CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCCh-
Confidence 3457899999776654221111011110000 0111111 68899999865332 3456788999999998754
Q ss_pred hHHHHHHHHHHHHHHhcCC-CCeEEEEEeC
Q 028283 92 ETFNHLSSWLEDARQHANP-NMSIMLVGNK 120 (211)
Q Consensus 92 ~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK 120 (211)
.+...+..+++.+.+.... ...+.+++|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4566677777776665443 4566777774
No 436
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.30 E-value=0.00064 Score=53.18 Aligned_cols=61 Identities=23% Similarity=0.372 Sum_probs=38.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCC----CCCCCCeeeEEEEEE-EEECCEEEEEEEEeCCCc
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ----PVHDLTIGVEFGARM-VTIDGRPIKLQIWDTAGQ 65 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~G~ 65 (211)
+....++|+|-||+|||||+|.+...... .....-.|++..+.. +.+...+ .+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 45678999999999999999988543221 111122244444433 3443333 3678999994
No 437
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.30 E-value=0.0031 Score=46.00 Aligned_cols=85 Identities=28% Similarity=0.300 Sum_probs=59.5
Q ss_pred EEEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHH
Q 028283 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 132 (211)
Q Consensus 53 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 132 (211)
..+.+.++|+|+.... .....+..+|.+++++..+.. +...+..+++.+... +.|+.+|+|+.|.... ..+
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 4567899999975432 344567889999999998743 455566666655543 5778999999997432 235
Q ss_pred HHHHHHHHcCCcEE
Q 028283 133 EGEQFAKENGLLFL 146 (211)
Q Consensus 133 ~~~~~~~~~~~~~~ 146 (211)
+.+++.+..+++++
T Consensus 162 ~~~~~~~~~~~~vl 175 (179)
T cd03110 162 EIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHcCCCeE
Confidence 67777877887755
No 438
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.29 E-value=0.00033 Score=52.52 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=26.0
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhC
Q 028283 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 1 m~~~~~~~I~v~G~~~~GKSsli~~l~~~ 29 (211)
|..+...-|+|+|++|+|||||++.|.+.
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 77778889999999999999999999864
No 439
>PRK08118 topology modulation protein; Reviewed
Probab=97.28 E-value=0.00025 Score=51.33 Aligned_cols=23 Identities=48% Similarity=0.626 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~ 29 (211)
.+|+|+|++|+|||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998854
No 440
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.26 E-value=0.0017 Score=45.07 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
--|++.|+.|+|||||++.+...-
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358899999999999999998664
No 441
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.00027 Score=51.66 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~ 29 (211)
++|+|+|+||+||||+.++|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999866
No 442
>PRK07261 topology modulation protein; Provisional
Probab=97.22 E-value=0.00029 Score=51.19 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~ 29 (211)
.+|+|+|++|+|||||.+.|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998643
No 443
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.20 E-value=0.00032 Score=49.14 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028283 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~ 29 (211)
|+++|++|+|||||++.|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999844
No 444
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.00031 Score=53.39 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 028283 9 YIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~~ 30 (211)
|+++|++|||||||+|.+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999987654
No 445
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.13 E-value=0.00042 Score=48.17 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999888664
No 446
>PRK10646 ADP-binding protein; Provisional
Probab=97.13 E-value=0.0042 Score=44.09 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
-|++-|+-|+|||||++.+...-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999997654
No 447
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.10 E-value=0.00043 Score=52.23 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
-|+++||+|||||||+|.+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 37899999999999999887544
No 448
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.10 E-value=0.00072 Score=50.91 Aligned_cols=68 Identities=18% Similarity=0.120 Sum_probs=37.4
Q ss_pred EEEEEEeCCCcchhhh------chHHHhccccEEEEEEeCC------CHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028283 55 IKLQIWDTAGQESFRS------ITRSYYRGAAGALLVYDIT------RRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~------~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (211)
-...++|+|||-++.. .....+...|.-+.++.+. +|..+. ...+..+.....-..|-+=|+.|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~i--S~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFI--SSLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHH--HHHHHHHHHHHhhcccchhhhhHhH
Confidence 3577999999764332 2333445566555555443 454432 2222222222222677888899999
Q ss_pred CC
Q 028283 123 LA 124 (211)
Q Consensus 123 ~~ 124 (211)
+.
T Consensus 175 l~ 176 (290)
T KOG1533|consen 175 LL 176 (290)
T ss_pred HH
Confidence 73
No 449
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.08 E-value=0.0032 Score=44.24 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~~ 31 (211)
-|++-|+-|+|||||.+.+...-.
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHHcC
Confidence 478899999999999999975544
No 450
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.08 E-value=0.00064 Score=41.51 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028283 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~ 29 (211)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998855
No 451
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.07 E-value=0.00068 Score=49.20 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=24.7
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhC
Q 028283 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 1 m~~~~~~~I~v~G~~~~GKSsli~~l~~~ 29 (211)
|+.....-+.|+|++|+|||||++++...
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence 55566677999999999999999999855
No 452
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.04 E-value=0.00077 Score=50.26 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
.++++||+|+|||||++.+..-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 58999999999999999988554
No 453
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.03 E-value=0.0004 Score=49.98 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=17.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~ 29 (211)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 454
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.0009 Score=53.93 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=26.5
Q ss_pred CEEEEEEEEeCCCcchhhh----chHH--HhccccEEEEEEeCCCHhH
Q 028283 52 GRPIKLQIWDTAGQESFRS----ITRS--YYRGAAGALLVYDITRRET 93 (211)
Q Consensus 52 ~~~~~~~l~D~~G~~~~~~----~~~~--~~~~~d~~i~v~d~~~~~s 93 (211)
..++.+.|+||.|.-.... .... -.-..|-+|+|+|++-...
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA 228 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence 3567899999999432221 1111 1235789999999986443
No 455
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.98 E-value=0.00065 Score=52.32 Aligned_cols=21 Identities=38% Similarity=0.446 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028283 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~ 28 (211)
-++++||.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368999999999999999975
No 456
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.98 E-value=0.00081 Score=46.21 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=22.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCC
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP 33 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~ 33 (211)
-.++++|++|+|||++++.+...-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 468999999999999999998665433
No 457
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.95 E-value=0.036 Score=40.12 Aligned_cols=84 Identities=12% Similarity=-0.025 Sum_probs=51.2
Q ss_pred EEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHH
Q 028283 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE 135 (211)
Q Consensus 56 ~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 135 (211)
.+.++|+|+.... .....+..+|.+|++++.... +...+..+++.+.... .....+++|+.+..... ..+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence 6889999986433 344567889999999987653 3444555555555422 34567889999864321 112233
Q ss_pred HHHHHcCCcEE
Q 028283 136 QFAKENGLLFL 146 (211)
Q Consensus 136 ~~~~~~~~~~~ 146 (211)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44444566654
No 458
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.94 E-value=0.00045 Score=60.19 Aligned_cols=121 Identities=18% Similarity=0.123 Sum_probs=74.7
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEE-------------------------------------
Q 028283 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA------------------------------------- 45 (211)
Q Consensus 3 ~~~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~------------------------------------- 45 (211)
+...+.|+|+|..++||||.++.+.+..+.+....-++-..-+
T Consensus 26 ~i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~ 105 (657)
T KOG0446|consen 26 FIPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRS 105 (657)
T ss_pred cccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHh
Confidence 3567899999999999999999999876644322211100000
Q ss_pred ----------------EEEEEC-CEEEEEEEEeCCCcc-------------hhhhchHHHhccccEEEEEEeCCCHhHHH
Q 028283 46 ----------------RMVTID-GRPIKLQIWDTAGQE-------------SFRSITRSYYRGAAGALLVYDITRRETFN 95 (211)
Q Consensus 46 ----------------~~~~~~-~~~~~~~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~ 95 (211)
....+. -.-..+.++|.||.. ....+...|+...+.+|+.+...+- --
T Consensus 106 et~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~--d~ 183 (657)
T KOG0446|consen 106 ETDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANS--DI 183 (657)
T ss_pred hHHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhh--hh
Confidence 000000 011246788999922 3444677888888888888877652 12
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 028283 96 HLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 96 ~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 125 (211)
....++....+....+...+-|++|.|+.+
T Consensus 184 ats~alkiarevDp~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 184 ATSPALVVAREVDPGGSRTLEVITKFDFMD 213 (657)
T ss_pred hcCHHHHHHHhhCCCccchhHHhhhHHhhh
Confidence 223455555555556677888888888754
No 459
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.94 E-value=0.00086 Score=48.96 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHH
Q 028283 7 FKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~ 27 (211)
-.++|+|++|+|||||++.++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999999886
No 460
>PRK04195 replication factor C large subunit; Provisional
Probab=96.94 E-value=0.019 Score=48.79 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCC
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
...+++.|++|+||||+++.|...-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999998653
No 461
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.93 E-value=0.00099 Score=50.76 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=23.9
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHh
Q 028283 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 1 m~~~~~~~I~v~G~~~~GKSsli~~l~~ 28 (211)
|.-...++|+|+|+|||||||+.+.|..
T Consensus 1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 1 MKLKGPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5555678999999999999999998854
No 462
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.93 E-value=0.021 Score=45.11 Aligned_cols=75 Identities=23% Similarity=0.348 Sum_probs=43.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcchhhhchHHHhc--cccEEEE
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR--GAAGALL 84 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~--~~d~~i~ 84 (211)
-.|+|.|.+|+||||+++.|-...+ ..+ |-.....+..+...... ..+.+.+
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~~~g~----------------~~~----------d~~~~~L~~~l~~~~~~~~~~~~~av 60 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALEDLGY----------------YCV----------DNLPPSLLPKLVELLAQSGGIRKVAV 60 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHHHcCC----------------eEE----------CCcCHHHHHHHHHHHHhcCCCCCeEE
Confidence 4689999999999999999953221 111 22222222232222222 1356788
Q ss_pred EEeCCCHhHHHHHHHHHHHHHHh
Q 028283 85 VYDITRRETFNHLSSWLEDARQH 107 (211)
Q Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~ 107 (211)
++|+.+...+.....++..+...
T Consensus 61 ~iD~r~~~~~~~~~~~~~~L~~~ 83 (288)
T PRK05416 61 VIDVRSRPFFDDLPEALDELRER 83 (288)
T ss_pred EEccCchhhHHHHHHHHHHHHHc
Confidence 88887765444555555555553
No 463
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.92 E-value=0.00088 Score=46.83 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028283 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~ 29 (211)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 464
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.92 E-value=0.0015 Score=44.56 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
--|++-|+-|+|||||++.+...-
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999997544
No 465
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.92 E-value=0.016 Score=41.26 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
.++++|++|+|||||++.+.+..
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999998653
No 466
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.91 E-value=0.00083 Score=49.49 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~ 29 (211)
.|+|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999654
No 467
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.91 E-value=0.0009 Score=49.84 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=19.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHH
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~ 27 (211)
..--.+++||+|||||||++.|-
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHH
Confidence 33456899999999999998876
No 468
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.90 E-value=0.00079 Score=53.91 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 028283 9 YIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~~ 30 (211)
++++||+|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999997654
No 469
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.89 E-value=0.00098 Score=45.73 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 028283 9 YIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~~ 30 (211)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998653
No 470
>PRK01889 GTPase RsgA; Reviewed
Probab=96.89 E-value=0.0011 Score=53.84 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCC
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~~~ 31 (211)
-+++++|.+|+|||||+|.|.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3689999999999999999997543
No 471
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.89 E-value=0.00096 Score=44.37 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=18.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHH
Q 028283 7 FKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~ 27 (211)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 358999999999999999876
No 472
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0016 Score=49.00 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 028283 9 YIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~~ 30 (211)
-+++||.|+|||||.+.+.++.
T Consensus 33 haiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 33 HAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999876
No 473
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.0009 Score=51.35 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~ 29 (211)
-++|+||.|+|||||++.+++-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999973
No 474
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.86 E-value=0.0014 Score=49.19 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=23.3
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhC
Q 028283 4 DYLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 4 ~~~~~I~v~G~~~~GKSsli~~l~~~ 29 (211)
.....|+|.|++|||||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999864
No 475
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.85 E-value=0.017 Score=43.76 Aligned_cols=103 Identities=9% Similarity=0.080 Sum_probs=64.1
Q ss_pred EEEEEEEeCCCcchhhhchHHHhccccEEEEEEeCCCHhH--HHHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCH
Q 028283 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET--FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 131 (211)
Q Consensus 54 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 131 (211)
.+.+.|+|+.|..... ....+..+|.+|+=.-.+..+. -...-.|+..+.+......|+-|+.|+..-.. .....
T Consensus 83 ~~d~VlvDleG~as~~--~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~ 159 (231)
T PF07015_consen 83 GFDFVLVDLEGGASEL--NDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQ 159 (231)
T ss_pred CCCEEEEeCCCCCchh--HHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHH
Confidence 3578999999865333 4455667999998776664332 22333455555555557899999999987421 11111
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028283 132 EEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 132 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
....++. .++|++.+...+.+.+.++|.
T Consensus 160 ~~~~e~~--~~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 160 RIISEQL--ESLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHH--hcCCccccccccHHHHHHHHH
Confidence 2223333 258888888887767766665
No 476
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.0007 Score=49.24 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCC
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
-.-++|.||+|+|||||+++|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3458899999999999999999765
No 477
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.85 E-value=0.001 Score=48.53 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 478
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.84 E-value=0.0084 Score=44.65 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 028283 9 YIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~~ 30 (211)
|+|+|++|+||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987654
No 479
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.00057 Score=52.15 Aligned_cols=163 Identities=18% Similarity=0.283 Sum_probs=90.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC-EEEEEEEEeCCCcchhhhchHHHhccc----
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGA---- 79 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~---- 79 (211)
....|++.|..+ +|++|++...... ....++...+|+.....-.+ .+-..++|+.+|......+....+..-
T Consensus 44 ~E~~I~~~Gn~~--~tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~ 120 (363)
T KOG3929|consen 44 FEFFIGSKGNGG--KTTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT 120 (363)
T ss_pred ceeEEEEecCCc--eeEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh
Confidence 456788888766 4999999886653 33344445555433322222 222457999999776655444333222
Q ss_pred cEEEEEEeCCCHhH-HHHHHHHHH--------------------------HHHHhcC-----------CCCeEEEEEeCC
Q 028283 80 AGALLVYDITRRET-FNHLSSWLE--------------------------DARQHAN-----------PNMSIMLVGNKC 121 (211)
Q Consensus 80 d~~i~v~d~~~~~s-~~~~~~~~~--------------------------~~~~~~~-----------~~~p~ivv~nK~ 121 (211)
-.+|++.|++++.. |..+...++ .+..... --+|++||+.|.
T Consensus 121 ~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsKY 200 (363)
T KOG3929|consen 121 FSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSKY 200 (363)
T ss_pred hhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccch
Confidence 27899999998754 222222111 1111100 248999999999
Q ss_pred CCCCCCCCCHHH-------HHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 028283 122 DLAHRRAVSKEE-------GEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177 (211)
Q Consensus 122 D~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~i~~~~~~~~~~ 177 (211)
|.-.. ...+. .+..+..+|+.++..|++- +.|-.+++.+......+...
T Consensus 201 DvFq~--FesekRkH~C~~LRf~Ah~yGaaLlmfSskM-----e~l~K~~r~~i~HlaFG~~~ 256 (363)
T KOG3929|consen 201 DVFQD--FESEKRKHICKTLRFVAHYYGAALLMFSSKM-----EALLKKIRGVINHLAFGIDK 256 (363)
T ss_pred hhhcc--ccHHHHHHHHHHHHHHHHHhhhHHHHHHHhh-----HHHHHHHHhhHHHhhcCCcC
Confidence 97432 11222 2334445677777777553 33445555555555554443
No 480
>PRK06217 hypothetical protein; Validated
Probab=96.84 E-value=0.0011 Score=48.66 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~~ 29 (211)
.+|+|+|.+|+|||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
No 481
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.84 E-value=0.001 Score=45.47 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028283 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~ 29 (211)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998755
No 482
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=96.84 E-value=0.013 Score=48.76 Aligned_cols=50 Identities=28% Similarity=0.317 Sum_probs=32.4
Q ss_pred chHHHhccccEEEEEEe-CCCHhHHHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 028283 71 ITRSYYRGAAGALLVYD-ITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (211)
.....|++++.+|+ | .+.-=+...+..++..+......++.+|++-+|.+
T Consensus 151 IlKaLyr~a~iLIL--DEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~ 201 (501)
T COG3845 151 ILKALYRGARLLIL--DEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK 201 (501)
T ss_pred HHHHHhcCCCEEEE--cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH
Confidence 56677777776664 2 11112345566777777766667888888888865
No 483
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.83 E-value=0.0012 Score=46.26 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~ 29 (211)
.|+|+|+.++|||||+..|+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 484
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.82 E-value=0.0012 Score=49.91 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57999999999999999998653
No 485
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.81 E-value=0.0031 Score=52.59 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=53.3
Q ss_pred hhhhchHHHhccccEEEEEEeCCCHhHH--HHHHHHHHHHHHhcCCCCeEEEEEeCCCCCCCCCCCHHHHHHHHHHcCCc
Q 028283 67 SFRSITRSYYRGAAGALLVYDITRRETF--NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 144 (211)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 144 (211)
.++.+|. .+..+|+++.++|+.+|--| ..+..+..... ..+..++++||+||..+.+ ......+....+++
T Consensus 164 ~WRQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~d----~~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~ni~ 236 (562)
T KOG1424|consen 164 IWRQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD----PSKANVLLVNKADLLPPEQ--RVAWAEYFRQNNIP 236 (562)
T ss_pred HHHHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhccc----cccceEEEEehhhcCCHHH--HHHHHHHHHhcCce
Confidence 3444554 56789999999999997433 22333333322 3567899999999965332 24455666778899
Q ss_pred EEEEeCCC
Q 028283 145 FLEASART 152 (211)
Q Consensus 145 ~~~~s~~~ 152 (211)
+++.||..
T Consensus 237 ~vf~SA~~ 244 (562)
T KOG1424|consen 237 VVFFSALA 244 (562)
T ss_pred EEEEeccc
Confidence 99999876
No 486
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.81 E-value=0.0012 Score=48.56 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=21.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCC
Q 028283 6 LFKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 6 ~~~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
.-.++++|++|+|||||++.|++.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3468999999999999999998653
No 487
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.79 E-value=0.0012 Score=48.22 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~ 29 (211)
-|+|+|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999864
No 488
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.78 E-value=0.0054 Score=50.37 Aligned_cols=64 Identities=17% Similarity=0.112 Sum_probs=37.3
Q ss_pred EEEEEEeCCCcchhhhc----hH--HHhccccEEEEEEeCCCHhHHHHHHHHHHHHHHhcCCCCe-EEEEEeCCCCCC
Q 028283 55 IKLQIWDTAGQESFRSI----TR--SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAH 125 (211)
Q Consensus 55 ~~~~l~D~~G~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 125 (211)
+.+.|+||+|.-..... .. .-.-+.|=+++|+|+.-.....+...-++. ..+ .-|+++|.|-..
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e-------~l~itGvIlTKlDGda 253 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNE-------ALGITGVILTKLDGDA 253 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhh-------hcCCceEEEEcccCCC
Confidence 57899999995433321 11 123467789999998775433333322222 222 257789999743
No 489
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.78 E-value=0.0013 Score=49.36 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
.++++|++|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 490
>PRK03839 putative kinase; Provisional
Probab=96.77 E-value=0.0013 Score=48.06 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~ 29 (211)
+|+|+|.+|+||||+.++|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988654
No 491
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.77 E-value=0.016 Score=46.10 Aligned_cols=143 Identities=18% Similarity=0.163 Sum_probs=76.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC---------------------CeeeEEEEEEE-------EE------
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL---------------------TIGVEFGARMV-------TI------ 50 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~~~~~~~~~---------------------~~~~~~~~~~~-------~~------ 50 (211)
.+.-|+++|-.|+||||-+-+|...-....... -.+...-.... -+
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 478899999999999998877632110000000 00111111100 00
Q ss_pred CCEEEEEEEEeCCCcchhhhc-------hHHHhcccc-----EEEEEEeCCCH-hHHHHHHHHHHHHHHhcCCCCeEEEE
Q 028283 51 DGRPIKLQIWDTAGQESFRSI-------TRSYYRGAA-----GALLVYDITRR-ETFNHLSSWLEDARQHANPNMSIMLV 117 (211)
Q Consensus 51 ~~~~~~~~l~D~~G~~~~~~~-------~~~~~~~~d-----~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv 117 (211)
....+.+.|+||+|.-..... ........+ =+++|+|++-. +.+.+.+.+-+.. . ---++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav-~------l~GiI 290 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV-G------LDGII 290 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc-C------CceEE
Confidence 123467899999995433322 222233333 38888898874 3444444432222 1 12678
Q ss_pred EeCCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028283 118 GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 118 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
++|.|-....- .+...+...++|+.++- -|++++++.
T Consensus 291 lTKlDgtAKGG----~il~I~~~l~~PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 291 LTKLDGTAKGG----IILSIAYELGIPIKFIG--VGEGYDDLR 327 (340)
T ss_pred EEecccCCCcc----eeeeHHHHhCCCEEEEe--CCCChhhcc
Confidence 89999643221 13345666788887775 345555553
No 492
>PRK14530 adenylate kinase; Provisional
Probab=96.77 E-value=0.0013 Score=49.57 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028283 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~I~v~G~~~~GKSsli~~l~~ 28 (211)
.+|+|+|++||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 493
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.77 E-value=0.0013 Score=49.57 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
.++++|++|+|||||++.+.+-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999753
No 494
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.77 E-value=0.0013 Score=49.14 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 495
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.77 E-value=0.0014 Score=47.72 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||+|-+.+=
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhc
Confidence 6899999999999999988743
No 496
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.76 E-value=0.0013 Score=48.63 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
.++++|++|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998653
No 497
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.0014 Score=50.17 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998653
No 498
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.73 E-value=0.0014 Score=48.72 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028283 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 I~v~G~~~~GKSsli~~l~~~ 29 (211)
|+|.|++|||||||++.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999765
No 499
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.73 E-value=0.0015 Score=49.44 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028283 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~I~v~G~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 500
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.73 E-value=0.0024 Score=47.85 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=21.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028283 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~I~v~G~~~~GKSsli~~l~~~ 29 (211)
...-|+|+|++|||||||++.|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4566889999999999999999754
Done!