BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028285
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D1J3|SARNP_MOUSE SAP domain-containing ribonucleoprotein OS=Mus musculus GN=Sarnp
PE=1 SV=3
Length = 210
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 59/115 (51%), Gaps = 16/115 (13%)
Query: 76 VTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS---KTQGSEVSKTSEELKRKARA 132
+ T++ +RAERF +PV + E K+ RA RFG S K S+ K K RA
Sbjct: 97 IPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERA 154
Query: 133 ERFGLPVPSSV---SEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
+RFGL V SS+ SE++ K K R RF A T+ E KRK RA RF
Sbjct: 155 QRFGLNV-SSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 47 AVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPV-----QMSEEEKR 101
++E KK ++ ++ +S D + + K RA+RFG+ V + ++EK
Sbjct: 115 SLESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKL 174
Query: 102 NTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGL 137
R ERFG + + G+ ++ +E KRK RAERFG+
Sbjct: 175 KKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERFGI 209
>sp|Q498U4|SARNP_RAT SAP domain-containing ribonucleoprotein OS=Rattus norvegicus
GN=Sarnp PE=1 SV=3
Length = 210
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 59/115 (51%), Gaps = 16/115 (13%)
Query: 76 VTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS---KTQGSEVSKTSEELKRKARA 132
+ T++ +RAERF +PV + E K+ RA RFG S K S+ K K RA
Sbjct: 97 IPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERA 154
Query: 133 ERFGLPVPSSV---SEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
+RFGL V SS+ SE++ K K R RF A T+ E KRK RA RF
Sbjct: 155 QRFGLNV-SSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 47 AVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPV-----QMSEEEKR 101
++E KK ++ ++ +S D + + K RA+RFG+ V + ++EK
Sbjct: 115 SLESKKAARAARFGISSVPTKGLSSDTKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKL 174
Query: 102 NTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGL 137
R ERFG + + G+ ++ +E KRK RAERFG+
Sbjct: 175 KKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERFGI 209
>sp|Q5R4V4|SARNP_PONAB SAP domain-containing ribonucleoprotein OS=Pongo abelii GN=SARNP
PE=2 SV=3
Length = 210
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 63/115 (54%), Gaps = 16/115 (13%)
Query: 76 VTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARA 132
+ T++ +RAERF +PV + E K+ RA RFG S T+G S +K L K K RA
Sbjct: 97 IPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERA 154
Query: 133 ERFGLPVPSSV---SEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
+RFGL V SS+ SE++ K K R RF A T+ E KRK RA RF
Sbjct: 155 QRFGLNV-SSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 47 AVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPV-----QMSEEEKR 101
++E KK ++ ++ +S D + + K RA+RFG+ V + ++EK
Sbjct: 115 SLESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKL 174
Query: 102 NTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGL 137
R ERFG + + G+ ++ +E KRK RAERFG+
Sbjct: 175 KKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERFGI 209
>sp|P82979|SARNP_HUMAN SAP domain-containing ribonucleoprotein OS=Homo sapiens GN=SARNP
PE=1 SV=3
Length = 210
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 63/115 (54%), Gaps = 16/115 (13%)
Query: 76 VTDTQKKIRRAERFGMPVQMSEEEKRNTRAERFGTGS-KTQG-SEVSKTSEEL-KRKARA 132
+ T++ +RAERF +PV + E K+ RA RFG S T+G S +K L K K RA
Sbjct: 97 IPQTERMQKRAERFNVPVSL--ESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERA 154
Query: 133 ERFGLPVPSSV---SEEEAKRKARLARF------APYPKTDSVEEDKRKARALRF 178
+RFGL V SS+ SE++ K K R RF A T+ E KRK RA RF
Sbjct: 155 QRFGLNV-SSISRKSEDDEKLKKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERF 207
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 47 AVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPV-----QMSEEEKR 101
++E KK ++ ++ +S D + + K RA+RFG+ V + ++EK
Sbjct: 115 SLESKKAARAARFGISSVPTKGLSSDNKPMVNLDKLKERAQRFGLNVSSISRKSEDDEKL 174
Query: 102 NTRAERFGTGSKTQGSEVSKTSEELKRKARAERFGL 137
R ERFG + + G+ ++ +E KRK RAERFG+
Sbjct: 175 KKRKERFGIVTSSAGTGTTEDTEAKKRK-RAERFGI 209
>sp|O74871|YCW3_SCHPO Uncharacterized protein C31H12.03c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC31H12.03c PE=1 SV=1
Length = 245
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 47 AVEVKKNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPVQMSEEEKRNTRAE 106
A E ++ +SK +V+ SP D+ + +K I+RA+RFG+PV E+ K+ RA
Sbjct: 119 AEEHQETTEESKQSVSNEVSSP-----DVAKEQEKLIQRAKRFGIPVD-DEQIKKAARAA 172
Query: 107 RFG 109
RFG
Sbjct: 173 RFG 175
>sp|A7ZCH5|GSA_CAMC1 Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter concisus
(strain 13826) GN=hemL PE=3 SV=1
Length = 427
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 20 ASAEGNPKNNVGPMDLEQNPGADVNSSAVEVKKNGNDSKTAVTITAVSPVSGDADLVTDT 79
A+ GN + P D+ +N + + VK ++K + + + P++G+ LV
Sbjct: 156 ATTYGNASSGGVPQDVVKNTFLAIYNDIESVKAIFENNKDKIGVVIIEPIAGNMGLVPAD 215
Query: 80 QKKIR----RAERFGMPVQMSEEEKRNTRAERFGT 110
+K +R ++FG V + +E RA R G+
Sbjct: 216 KKFLRELRELCDKFG-AVLILDEVMSGFRASRLGS 249
>sp|Q19165|FLP06_CAEEL FMRFamide-like neuropeptides 6 OS=Caenorhabditis elegans GN=flp-6
PE=1 SV=3
Length = 170
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 141 SSVSEEEAKRKARLARFAPYPKTDSVEEDKRKARALRFSKTSSSSVSQ-VNGKGNIEVEA 199
S V E KRK+ RF + +E +KRK+ +RF K SS Q + G +I++E
Sbjct: 23 SEVEREMMKRKSAYMRFGRSDGGNPMEMEKRKSAYMRFGKRSSGGDEQELVGGDDIDMEK 82
Query: 200 K 200
+
Sbjct: 83 R 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.302 0.119 0.305
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,954,778
Number of Sequences: 539616
Number of extensions: 2961831
Number of successful extensions: 8746
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 269
Number of HSP's that attempted gapping in prelim test: 8546
Number of HSP's gapped (non-prelim): 411
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 59 (27.3 bits)