BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028288
MVITCLLEMVLESRYKASHFIVKSFPSLGILFSDNFFRHILYFQVCQMLRIVTFYSTQLP
GPNYHCREGSKLARLPRPESVVEVLLINFPRGMIYGCGDLIFSSHMIFTLLFVLTYHKYG
TIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVFFINKKLPELPDRSNASA
SLQFLPVSSRDKDGRNKDELHRSNNGTSGHI

High Scoring Gene Products

Symbol, full name Information P value
AtIPCS1
Arabidopsis Inositol phosphorylceramide synthase 1
protein from Arabidopsis thaliana 3.7e-55
AtIPCS3
Arabidopsis Inositol phosphorylceramide synthase 3
protein from Arabidopsis thaliana 1.2e-49
AtIPCS2
Arabidopsis Inositol phosphorylceramide synthase 2
protein from Arabidopsis thaliana 4.1e-49

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028288
        (211 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2084455 - symbol:AtIPCS1 "Arabidopsis Inositol...   569  3.7e-55   1
TAIR|locus:504956063 - symbol:AtIPCS3 "Arabidopsis Inosit...   517  1.2e-49   1
TAIR|locus:2065629 - symbol:AtIPCS2 "Arabidopsis Inositol...   512  4.1e-49   1


>TAIR|locus:2084455 [details] [associations]
            symbol:AtIPCS1 "Arabidopsis Inositol phosphorylceramide
            synthase 1" species:3702 "Arabidopsis thaliana" [GO:0005886 "plasma
            membrane" evidence=ISM] [GO:0030148 "sphingolipid biosynthetic
            process" evidence=IDA] [GO:0045140 "inositol phosphoceramide
            synthase activity" evidence=IMP;IDA] GO:GO:0016021 EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AL132960 GO:GO:0030148 GO:GO:0045140
            EMBL:AY048287 EMBL:AY139802 IPI:IPI00540672 IPI:IPI00543730
            PIR:T45942 RefSeq:NP_190970.1 UniGene:At.1413 IntAct:Q9M325
            EnsemblPlants:AT3G54020.1 GeneID:824569 KEGG:ath:AT3G54020
            TAIR:At3g54020 eggNOG:NOG259509 HOGENOM:HOG000005733
            InParanoid:Q9M325 OMA:CASQFLR PhylomeDB:Q9M325
            ProtClustDB:CLSN2685069 Genevestigator:Q9M325 InterPro:IPR025749
            Pfam:PF14360 Uniprot:Q9M325
        Length = 305

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 116/187 (62%), Positives = 135/187 (72%)

Query:    20 FIVKSFPSLGILFSDNFFRHILYFQVCQMLRIVTFYSTQLPGPNYHCREGSKLARLPRPE 79
             FIVKS     +L    + R + +   CQ LR++TFYSTQLPGPNYHCREGS+LARLPRP 
Sbjct:    99 FIVKSKKIYTVLI---WCRVLAFLVACQFLRVITFYSTQLPGPNYHCREGSELARLPRPH 155

Query:    80 SVVEVLLINFPRGMIYGCGDLIFSSHMIFTLLFVLTYHKYGTIRFIKQXXXXXXXXXXXX 139
             +V+EVLL+NFPRG+IYGCGDLIFSSHMIFTL+FV TY KYG+ RFIK             
Sbjct:   156 NVLEVLLLNFPRGVIYGCGDLIFSSHMIFTLVFVRTYQKYGSKRFIKLLGWVIAILQSLL 215

Query:   140 XXXXRKHYTVDVVVAWYTVNLVVFFINKKLPELPDRSNASASLQFLPVSSRDKDGRNKDE 199
                 RKHYTVDVVVAWYTVNLVVFF++KKLPELPDR+ A      LPV S+D   R K+E
Sbjct:   216 IIASRKHYTVDVVVAWYTVNLVVFFLDKKLPELPDRTTA-----LLPVISKD---RTKEE 267

Query:   200 LHRSNNG 206
              H+  NG
Sbjct:   268 SHKLLNG 274


>TAIR|locus:504956063 [details] [associations]
            symbol:AtIPCS3 "Arabidopsis Inositol phosphorylceramide
            synthase 3" species:3702 "Arabidopsis thaliana" [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0030148 "sphingolipid
            biosynthetic process" evidence=IDA] [GO:0045140 "inositol
            phosphoceramide synthase activity" evidence=IMP;IDA] GO:GO:0016021
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0030148 GO:GO:0045140
            EMBL:AC004561 eggNOG:NOG259509 HOGENOM:HOG000005733
            ProtClustDB:CLSN2685069 InterPro:IPR025749 Pfam:PF14360
            EMBL:AY231431 EMBL:BX820662 EMBL:AK221522 IPI:IPI00539390
            IPI:IPI00548168 IPI:IPI00570380 RefSeq:NP_001189633.1
            RefSeq:NP_850134.2 RefSeq:NP_973560.1 UniGene:At.11436
            UniGene:At.66368 EnsemblPlants:AT2G29525.1
            EnsemblPlants:AT2G29525.3 GeneID:817501 KEGG:ath:AT2G29525
            TAIR:At2g29525 InParanoid:Q56Y01 OMA:RHDEDIN PhylomeDB:Q56Y01
            Genevestigator:Q56Y01 Uniprot:Q56Y01
        Length = 289

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 96/176 (54%), Positives = 125/176 (71%)

Query:    38 RHILYFQVCQMLRIVTFYSTQLPGPNYHCREGSKLARLPRPESVVEVLLINFPRGMIYGC 97
             R  +Y    Q LRI+TF++TQLPGPNYHCREGSKLA++P P++V+EVLLINFP G+IYGC
Sbjct:   114 RVFVYLAASQSLRIITFFATQLPGPNYHCREGSKLAKIPPPKNVLEVLLINFPDGVIYGC 173

Query:    98 GDLIFSSHMIFTLLFVLTYHKYGTIRFIKQXXXXXXXXXXXXXXXXRKHYTVDVVVAWYT 157
             GDLIFSSH IFTL+FV TY +YGT R+IK                 RKHYTVD+VVAWYT
Sbjct:   174 GDLIFSSHTIFTLVFVRTYQRYGTRRWIKHLAWLMAVIQSILIIASRKHYTVDIVVAWYT 233

Query:   158 VNLVVFFINKKLPELPDRSNASASLQFLPVSSRDKDGRNKDELHR---SNNGTSGH 210
             VNLV+F+++ KLPE+ +RS+  +    LP+S++D   ++K++  R    NN    H
Sbjct:   234 VNLVMFYVDSKLPEMAERSSGPSPTPLLPLSTKDSKNKSKEDHQRLLNENNVADDH 289


>TAIR|locus:2065629 [details] [associations]
            symbol:AtIPCS2 "Arabidopsis Inositol phosphorylceramide
            synthase 2" species:3702 "Arabidopsis thaliana" [GO:0005886 "plasma
            membrane" evidence=ISM] [GO:0005802 "trans-Golgi network"
            evidence=IDA] [GO:0030148 "sphingolipid biosynthetic process"
            evidence=IDA] [GO:0045140 "inositol phosphoceramide synthase
            activity" evidence=IMP;IDA] [GO:0006612 "protein targeting to
            membrane" evidence=RCA] [GO:0006944 "cellular membrane fusion"
            evidence=RCA] [GO:0009723 "response to ethylene stimulus"
            evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
            [GO:0010363 "regulation of plant-type hypersensitive response"
            evidence=RCA] [GO:0043069 "negative regulation of programmed cell
            death" evidence=RCA] [GO:0050832 "defense response to fungus"
            evidence=RCA] GO:GO:0016021 GO:GO:0005794 EMBL:CP002685
            GO:GO:0006952 GO:GO:0005802 GO:GO:0030148 GO:GO:0045140
            eggNOG:NOG259509 HOGENOM:HOG000005733 ProtClustDB:CLSN2685069
            InterPro:IPR025749 Pfam:PF14360 EMBL:AF325083 EMBL:AY058059
            EMBL:AY090297 EMBL:AK317636 IPI:IPI00547009 PIR:A84799
            RefSeq:NP_565875.1 UniGene:At.14635 STRING:Q9SH93
            EnsemblPlants:AT2G37940.1 GeneID:818371 KEGG:ath:AT2G37940
            TAIR:At2g37940 InParanoid:Q9SH93 OMA:TKEENHK PhylomeDB:Q9SH93
            BioCyc:ARA:AT2G37940-MONOMER BioCyc:MetaCyc:AT2G37940-MONOMER
            Genevestigator:Q9SH93 Uniprot:Q9SH93
        Length = 305

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 109/187 (58%), Positives = 131/187 (70%)

Query:    20 FIVKSFPSLGILFSDNFFRHILYFQVCQMLRIVTFYSTQLPGPNYHCREGSKLARLPRPE 79
             FI+K+     +L    + R + +   CQ LR++TFYSTQLPGPNYHCREGSK++RLP P+
Sbjct:    99 FILKTKKIYTVLI---WCRVLAFLVACQFLRVITFYSTQLPGPNYHCREGSKVSRLPWPK 155

Query:    80 SVVEVLLINFPRGMIYGCGDLIFSSHMIFTLLFVLTYHKYGTIRFIKQXXXXXXXXXXXX 139
             S +EVL IN P G++YGCGDLIFSSHMIFTL+FV TY KYGT RFIK             
Sbjct:   156 SALEVLEIN-PHGVMYGCGDLIFSSHMIFTLVFVRTYQKYGTKRFIKLFGWLTAIVQSLL 214

Query:   140 XXXXRKHYTVDVVVAWYTVNLVVFFINKKLPELPDRSNASASLQFLPVSSRDKDGRNKDE 199
                 RKHY+VDVVVAWYTVNLVVF ++KKLPELPDR+   A L  LPV S+D   R K+E
Sbjct:   215 IIASRKHYSVDVVVAWYTVNLVVFCLDKKLPELPDRT---AVL--LPVISKD---RTKEE 266

Query:   200 LHRSNNG 206
              H+  NG
Sbjct:   267 NHKLLNG 273


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.328   0.142   0.435    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      211       195   0.00078  111 3  11 22  0.37    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  594 (63 KB)
  Total size of DFA:  165 KB (2097 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.09u 0.12s 16.21t   Elapsed:  00:00:00
  Total cpu time:  16.09u 0.12s 16.21t   Elapsed:  00:00:00
  Start:  Fri May 10 12:13:17 2013   End:  Fri May 10 12:13:17 2013

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