Query 028288
Match_columns 211
No_of_seqs 128 out of 261
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 15:00:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028288.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028288hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ipb_A PHON protein, class A n 95.8 0.026 8.8E-07 47.3 7.6 62 101-164 134-195 (230)
2 1d2t_A Acid phosphatase; all a 95.2 0.058 2E-06 45.2 7.8 64 100-165 145-208 (231)
3 1up8_A Vanadium-dependent brom 64.6 15 0.00052 35.3 7.2 70 102-171 484-578 (598)
4 1qi9_A Protein (vanadium bromo 57.8 23 0.00078 33.7 7.1 39 132-170 472-510 (556)
5 1dt7_X Cellular tumor antigen 25.4 22 0.00076 20.1 0.7 17 190-206 4-20 (26)
6 2jln_A MHP1; hydantoin, transp 23.1 1.1E+02 0.0039 27.7 5.5 40 125-170 410-449 (501)
7 3bb0_A Vanadium chloroperoxida 17.9 47 0.0016 31.9 1.7 29 131-159 481-509 (609)
8 2ds5_A CLPX, ATP-dependent CLP 13.7 37 0.0013 22.1 -0.1 17 194-210 18-34 (51)
9 1fs1_B SKP1, cyclin A/CDK2-ass 9.3 94 0.0032 23.4 0.9 13 193-205 122-134 (141)
10 4gc0_A D-xylose-proton symport 9.2 1.2E+02 0.004 25.9 1.5 18 191-208 465-482 (491)
No 1
>2ipb_A PHON protein, class A nonspecific acid phosphatase PHON; class-A bacterial non-specific acid phosphatase; 2.23A {Salmonella typhimurium} PDB: 2a96_A 2akc_A
Probab=95.79 E-value=0.026 Score=47.26 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=43.9
Q ss_pred EeeccHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHHH
Q 028288 101 IFSSHMIFTLLFVLTYHKYGTIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVFF 164 (211)
Q Consensus 101 iFSGHt~~~~l~~l~~~~Y~~~r~lk~i~wll~~~~~~~iI~sR~HYTVDVvlA~~i~~lvf~~ 164 (211)
+-|||++.......++..+.++++...+ .++.....--|....||--||+.|+.+...+...
T Consensus 134 FPSGHa~~a~a~a~~l~~~~~~~~~~~~--~~a~~v~~SRv~~G~H~~sDVlaG~~lG~~~~~~ 195 (230)
T 2ipb_A 134 YPSGHDAYSTLLALVLSQARPERAQELA--RRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFAR 195 (230)
T ss_dssp SSCHHHHHHHHHHHHHHHHCGGGHHHHH--HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH
Confidence 6799999877766666666665543222 3344455566777899999999999988776543
No 2
>1d2t_A Acid phosphatase; all alpha, hydrolase; 1.90A {Escherichia blattae} SCOP: a.111.1.1 PDB: 1eoi_A 1iw8_A
Probab=95.21 E-value=0.058 Score=45.15 Aligned_cols=64 Identities=16% Similarity=-0.024 Sum_probs=44.2
Q ss_pred eEeeccHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHHHH
Q 028288 100 LIFSSHMIFTLLFVLTYHKYGTIRFIKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVFFI 165 (211)
Q Consensus 100 LiFSGHt~~~~l~~l~~~~Y~~~r~lk~i~wll~~~~~~~iI~sR~HYTVDVvlA~~i~~lvf~~~ 165 (211)
=+-|||++.....+.++..+.+++.... ...+.....--+....||-.||+.|+.+...+...+
T Consensus 145 SFPSGHa~~a~a~a~~l~~~~~~~~~~~--~~~a~~v~~SRvylGvH~psDVlaG~~lG~~~~~~~ 208 (231)
T 1d2t_A 145 SYPSGHTSIGWATALVLAEINPQRQNEI--LKRGYELGQSRVICGYHWQSDVDAARVVGSAVVATL 208 (231)
T ss_dssp CSSCHHHHHHHHHHHHHHHHCGGGHHHH--HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHH
Confidence 3679999987776666655666553322 333444555667778999999999999887665543
No 3
>1up8_A Vanadium-dependent bromoperoxidase 1; haloperoxidase, vanadate; 2.20A {Corallina pilulifera} SCOP: a.111.1.2 PDB: 1qhb_A
Probab=64.56 E-value=15 Score=35.27 Aligned_cols=70 Identities=14% Similarity=-0.046 Sum_probs=45.7
Q ss_pred eeccHHHHHHHHHHHHHhcchhH-------------------------HHHHHHHHHHHHHHHHHHcCCcceehhhHHHH
Q 028288 102 FSSHMIFTLLFVLTYHKYGTIRF-------------------------IKQSAWLLAIIESLLIIASRKHYTVDVVVAWY 156 (211)
Q Consensus 102 FSGHt~~~~l~~l~~~~Y~~~r~-------------------------lk~i~wll~~~~~~~iI~sR~HYTVDVvlA~~ 156 (211)
=|||+++...++..+..+.+.++ .....+.++....+--+..--||--||..|+.
T Consensus 484 PSGHAt~S~A~A~vL~~lf~~~~~~~~~~~~~~~G~~R~~p~~g~~ltv~~sl~~lA~eig~SRVYlGVHypSDVlAG~~ 563 (598)
T 1up8_A 484 GSGHAVVAGACVTILKAFFDSGIEIDQVFEVDKDEDKLVKSSFKGTLTVAGELNKLADNIAIGRNMAGVHYFSDQFESLL 563 (598)
T ss_dssp SCHHHHHHHHHHHHHHHHBTTTCBCSCCEEECSSSSSEEECCCCSCCBHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccccccccccccccCcccccccccccchhHHHHHHHHHHHHHHHhheeeeecHHHHHHHHH
Confidence 48999987777776666544332 00123334444555666777999999999999
Q ss_pred HHHHHHHHHhhccCC
Q 028288 157 TVNLVVFFINKKLPE 171 (211)
Q Consensus 157 i~~lvf~~~~~~l~~ 171 (211)
+...+..+..+...+
T Consensus 564 LG~aVa~~vl~~~~~ 578 (598)
T 1up8_A 564 LGEQVAIGILEEQSL 578 (598)
T ss_dssp HHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHH
Confidence 887776665555443
No 4
>1qi9_A Protein (vanadium bromoperoxidase); haloperoxidase, oxidoreductase; 2.05A {Ascophyllum nodosum} SCOP: a.111.1.2
Probab=57.81 E-value=23 Score=33.74 Aligned_cols=39 Identities=13% Similarity=-0.013 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCcceehhhHHHHHHHHHHHHHhhccC
Q 028288 132 LAIIESLLIIASRKHYTVDVVVAWYTVNLVVFFINKKLP 170 (211)
Q Consensus 132 l~~~~~~~iI~sR~HYTVDVvlA~~i~~lvf~~~~~~l~ 170 (211)
++....+--|...-||--||+.|+.+...+.....+...
T Consensus 472 lA~lIg~SRVYlGVHYPSDVlaG~lLG~~va~~vl~~~~ 510 (556)
T 1qi9_A 472 LAVNVAFGRQMLGIHYRFDGIQGLLLGETITVRTLHQEL 510 (556)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHeeCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777899999999999988777665555444
No 5
>1dt7_X Cellular tumor antigen P53; S100B, C-terminal domain of P53, calcium-binding, EF-hand, S100 protein, four helix bundle, helix loop helix; NMR {Rattus norvegicus} SCOP: j.69.1.1
Probab=25.45 E-value=22 Score=20.13 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=13.6
Q ss_pred cCCCCCchhhhhhcCCC
Q 028288 190 RDKDGRNKDELHRSNNG 206 (211)
Q Consensus 190 ~~~~~~~~~e~~~~~~~ 206 (211)
++|+|.+.|.|.|++-.
T Consensus 4 K~KkGQs~sr~KK~Mvk 20 (26)
T 1dt7_X 4 KSKKGQSTSRHKKLMFK 20 (26)
T ss_dssp CCCCCCGGGHHHHHHTT
T ss_pred cccCCCCccccccceEe
Confidence 56899999999887643
No 6
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=23.11 E-value=1.1e+02 Score=27.72 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcceehhhHHHHHHHHHHHHHhhccC
Q 028288 125 IKQSAWLLAIIESLLIIASRKHYTVDVVVAWYTVNLVVFFINKKLP 170 (211)
Q Consensus 125 lk~i~wll~~~~~~~iI~sR~HYTVDVvlA~~i~~lvf~~~~~~l~ 170 (211)
.-.++|++.+...+. =|.+..++|..++..+++.+.+..+
T Consensus 410 ~a~~a~~~G~~~~~~------~~~~~~~~g~~va~v~Y~~l~~~~~ 449 (501)
T 2jln_A 410 VALAVYAVALAVSFL------TPDLMFVTGLIAALLLHIPAMRWVA 449 (501)
T ss_dssp HHHHHHHHHHHHHHT------CGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH------HhhhHHHHHHHHHHHHHHHHHHhCc
Confidence 445667665544433 2567788888888777776655544
No 7
>3bb0_A Vanadium chloroperoxidase; protein phosphate-intermediate complex, phospatase activity, chloride, metal-binding, oxidoreductase, secreted; 1.50A {Curvularia inaequalis} PDB: 1vns_A 1vnc_A 1vni_A 1idq_A 1vne_A 1vnf_A 1idu_A 1vng_A 1vnh_A
Probab=17.91 E-value=47 Score=31.93 Aligned_cols=29 Identities=17% Similarity=0.087 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCcceehhhHHHHHHH
Q 028288 131 LLAIIESLLIIASRKHYTVDVVVAWYTVN 159 (211)
Q Consensus 131 ll~~~~~~~iI~sR~HYTVDVvlA~~i~~ 159 (211)
.++....+--+..-.||--||..|..+..
T Consensus 481 ~~A~e~g~SRIY~GVHypsDv~aG~~lG~ 509 (609)
T 3bb0_A 481 ELMFENAISRIFLGVHWRFDAAAARDILI 509 (609)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHSCHHHHBC
T ss_pred HHHHHHhhhhheeeeeCHHHHHHHHHHHH
Confidence 34455555667788999999999998653
No 8
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=13.66 E-value=37 Score=22.08 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=13.9
Q ss_pred CCchhhhhhcCCCCccc
Q 028288 194 GRNKDELHRSNNGTSGH 210 (211)
Q Consensus 194 ~~~~~e~~~~~~~~~~~ 210 (211)
||+++|..+|..|.++-
T Consensus 18 Gk~~~ev~~LIaGpgv~ 34 (51)
T 2ds5_A 18 GKSQHEVRKLIAGPSVY 34 (51)
T ss_dssp CCBTTTSSCEEECSSCE
T ss_pred CCCHHHhcccCCCCCCE
Confidence 78889999999887643
No 9
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=9.33 E-value=94 Score=23.43 Aligned_cols=13 Identities=23% Similarity=0.624 Sum_probs=10.5
Q ss_pred CCCchhhhhhcCC
Q 028288 193 DGRNKDELHRSNN 205 (211)
Q Consensus 193 ~~~~~~e~~~~~~ 205 (211)
+||+.||+++.+|
T Consensus 122 kgkt~eeiR~~f~ 134 (141)
T 1fs1_B 122 KGKTPEEIRKTFN 134 (141)
T ss_dssp TTCCHHHHHHHTC
T ss_pred cCCCHHHHHHHcC
Confidence 3788899988876
No 10
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=9.18 E-value=1.2e+02 Score=25.92 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=12.8
Q ss_pred CCCCCchhhhhhcCCCCc
Q 028288 191 DKDGRNKDELHRSNNGTS 208 (211)
Q Consensus 191 ~~~~~~~~e~~~~~~~~~ 208 (211)
|-.||+-||+|++.++.+
T Consensus 465 ETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 465 ETKGKTLEELEALWEPET 482 (491)
T ss_dssp CCTTCCHHHHGGGTC---
T ss_pred CCCCCCHHHHHHHhCCCC
Confidence 556899999999988753
Done!