Query 028291
Match_columns 211
No_of_seqs 112 out of 688
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 15:04:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3efo_B SEC24 related gene fami 100.0 7.1E-56 2.4E-60 429.7 20.3 199 7-207 19-239 (770)
2 3eh2_A Protein transport prote 100.0 8.2E-56 2.8E-60 429.1 20.4 199 7-207 15-235 (766)
3 1pcx_A Protein transport prote 100.0 1.3E-50 4.3E-55 394.9 16.9 182 24-207 50-245 (810)
4 1m2v_B SEC24, protein transpor 100.0 1.8E-50 6.1E-55 397.4 15.9 182 24-207 166-361 (926)
5 3eh1_A Protein transport prote 100.0 2.7E-49 9.2E-54 382.7 15.4 171 31-208 34-218 (751)
6 2nut_A Protein transport prote 100.0 5E-43 1.7E-47 339.9 11.2 169 25-208 6-185 (769)
7 1m2o_A SEC23, protein transpor 100.0 1.3E-41 4.4E-46 330.0 13.3 160 34-208 6-174 (768)
8 2yrc_A Protein transport prote 99.4 4.5E-14 1.5E-18 95.0 2.8 36 85-120 6-43 (59)
9 1mjn_A Integrin alpha-L; rossm 96.7 0.0045 1.5E-07 48.6 7.1 51 151-202 2-52 (179)
10 3zqk_A VON willebrand factor; 96.6 0.0059 2E-07 48.7 7.4 51 150-202 20-73 (199)
11 2xgg_A Microneme protein 2; A/ 96.5 0.0064 2.2E-07 47.6 7.2 51 151-202 17-69 (178)
12 1ijb_A VON willebrand factor; 96.5 0.0067 2.3E-07 48.5 7.2 50 151-202 13-65 (202)
13 1atz_A VON willebrand factor; 96.4 0.0076 2.6E-07 47.3 7.0 52 150-202 4-57 (189)
14 1mf7_A Integrin alpha M; cell 96.4 0.0074 2.5E-07 47.5 6.5 51 150-202 4-55 (194)
15 3ibs_A Conserved hypothetical 96.3 0.014 4.7E-07 46.5 8.2 50 149-201 9-63 (218)
16 1n3y_A Integrin alpha-X; alpha 96.3 0.012 4E-07 46.3 7.3 51 150-202 8-59 (198)
17 1q0p_A Complement factor B; VO 96.2 0.0074 2.5E-07 48.2 5.8 54 148-203 12-68 (223)
18 4hqf_A Thrombospondin-related 96.1 0.01 3.5E-07 49.9 6.6 52 150-201 20-73 (281)
19 4fx5_A VON willebrand factor t 95.8 0.024 8.2E-07 51.7 8.0 52 150-203 76-129 (464)
20 4hqo_A Sporozoite surface prot 95.8 0.022 7.6E-07 47.6 7.1 52 150-202 17-71 (266)
21 1v7p_C Integrin alpha-2; snake 95.6 0.029 1E-06 44.4 6.8 48 151-202 6-56 (200)
22 3rag_A Uncharacterized protein 95.6 0.019 6.6E-07 48.3 5.8 48 150-199 133-182 (242)
23 2odp_A Complement C2; C3/C5 co 95.6 0.018 6.1E-07 52.2 6.1 52 149-202 7-61 (509)
24 2x31_A Magnesium-chelatase 60 95.1 0.016 5.6E-07 45.2 3.8 47 150-198 4-51 (189)
25 3n2n_F Anthrax toxin receptor 95.1 0.077 2.6E-06 40.9 7.6 50 151-202 7-56 (185)
26 1pt6_A Integrin alpha-1; cell 95.1 0.053 1.8E-06 43.3 6.9 49 150-202 6-57 (213)
27 2b2x_A Integrin alpha-1; compu 95.0 0.046 1.6E-06 44.0 6.2 49 150-202 21-72 (223)
28 1shu_X Anthrax toxin receptor 94.6 0.14 4.9E-06 39.2 8.1 49 150-201 5-54 (182)
29 1rrk_A Complement factor B; BB 94.4 0.042 1.4E-06 49.4 5.1 50 152-203 2-54 (497)
30 3hrz_D Complement factor B; se 93.9 0.053 1.8E-06 51.3 5.0 51 150-201 242-294 (741)
31 3k6s_A Integrin alpha-X; cell 93.2 0.18 6.3E-06 50.6 7.6 51 151-202 130-180 (1095)
32 4b4t_W RPN10, 26S proteasome r 89.4 0.38 1.3E-05 40.9 4.6 44 153-198 5-56 (268)
33 1jey_B KU80; double-strand DNA 88.6 0.85 2.9E-05 42.3 6.9 47 152-199 8-62 (565)
34 2ww8_A RRGA, cell WALL surface 87.9 0.55 1.9E-05 46.3 5.3 51 149-200 222-279 (893)
35 2a20_A Regulating synaptic mem 87.1 0.13 4.4E-06 33.9 0.2 28 87-118 32-59 (62)
36 2x5n_A SPRPN10, 26S proteasome 86.8 1.1 3.7E-05 35.7 5.6 44 153-198 4-55 (192)
37 1jey_A KU70; double-strand DNA 86.6 1.2 4.1E-05 41.8 6.6 46 153-200 37-92 (609)
38 1pft_A TFIIB, PFTFIIBN; N-term 81.7 2.6 8.8E-05 26.1 4.6 29 87-118 4-32 (50)
39 1gh9_A 8.3 kDa protein (gene M 79.1 0.94 3.2E-05 30.8 1.9 27 86-118 2-28 (71)
40 1b3t_A Protein (nuclear protei 78.1 3.2 0.00011 31.4 4.7 33 170-202 112-146 (147)
41 2iue_A Pactolus I-domain; memb 74.1 5.9 0.0002 32.3 5.8 46 151-199 3-51 (212)
42 4gat_A Nitrogen regulatory pro 73.5 0.92 3.2E-05 30.4 0.6 32 86-118 7-38 (66)
43 2csz_A Synaptotagmin-like prot 68.6 2.1 7.1E-05 29.5 1.6 30 89-118 43-72 (76)
44 2vut_I AREA, nitrogen regulato 68.4 0.89 3E-05 27.9 -0.3 30 88-118 1-30 (43)
45 1vq8_Z 50S ribosomal protein L 66.2 4.6 0.00016 28.1 3.0 28 87-118 26-53 (83)
46 2avu_E Flagellar transcription 61.7 1.7 5.7E-05 35.2 0.0 32 85-119 131-163 (192)
47 2zet_C Melanophilin; complex, 61.7 2 6.9E-05 33.4 0.5 31 88-118 85-116 (153)
48 6rxn_A Rubredoxin; electron tr 61.0 1.3 4.4E-05 27.6 -0.6 30 89-118 5-38 (46)
49 3t3p_B Integrin beta-3; integr 60.4 16 0.00054 33.4 6.2 49 149-199 109-159 (472)
50 3fcs_B Integrin beta-3; beta p 60.2 8 0.00027 37.0 4.4 49 149-200 109-160 (690)
51 2hgo_A CASSIICOLIN; toxin, dis 59.9 3.6 0.00012 22.0 1.1 26 90-116 2-27 (27)
52 1zbd_B Rabphilin-3A; G protein 57.8 4.8 0.00016 30.5 2.0 30 89-118 73-106 (134)
53 1s24_A Rubredoxin 2; electron 57.0 1.7 5.8E-05 30.7 -0.6 34 86-119 33-77 (87)
54 1yvr_A RO autoantigen, 60-kDa 56.5 6.7 0.00023 35.9 3.1 53 148-202 365-421 (538)
55 3j20_Y 30S ribosomal protein S 56.3 6 0.00021 24.8 2.0 25 88-118 19-45 (50)
56 1yuz_A Nigerythrin; rubrythrin 56.2 3.3 0.00011 33.4 0.9 27 87-120 170-196 (202)
57 3v4v_B Integrin beta-7; cell a 56.2 21 0.00074 32.8 6.4 49 149-199 130-180 (503)
58 3vi3_B Integrin beta-1; beta p 53.8 36 0.0012 30.9 7.4 49 149-199 120-170 (454)
59 4hc9_A Trans-acting T-cell-spe 52.2 2.4 8.1E-05 31.4 -0.6 32 86-118 3-34 (115)
60 3k6s_B Integrin beta-2; cell r 51.2 8.1 0.00028 36.9 2.8 50 149-199 102-152 (687)
61 1gnf_A Transcription factor GA 51.0 1.5 5E-05 27.3 -1.6 31 87-118 3-33 (46)
62 1yk4_A Rubredoxin, RD; electro 50.5 2.3 7.7E-05 27.1 -0.8 9 110-118 35-43 (52)
63 1dx8_A Rubredoxin; electron tr 47.9 2.9 0.0001 28.2 -0.6 32 88-119 7-49 (70)
64 1e8j_A Rubredoxin; iron-sulfur 46.4 2.4 8.1E-05 27.0 -1.2 9 110-118 36-44 (52)
65 4rxn_A Rubredoxin; electron tr 45.9 3.2 0.00011 26.6 -0.6 9 110-118 36-44 (54)
66 2nvo_A RO sixty-related protei 45.6 15 0.00052 33.6 3.7 53 148-202 359-417 (535)
67 1x0t_A Ribonuclease P protein 44.9 12 0.00042 27.5 2.4 30 89-118 66-102 (120)
68 2v3b_B Rubredoxin 2, rubredoxi 42.1 3.5 0.00012 26.5 -0.9 9 110-118 36-44 (55)
69 2kn9_A Rubredoxin; metalloprot 41.4 3.4 0.00012 28.8 -1.1 10 110-119 60-69 (81)
70 3dfx_A Trans-acting T-cell-spe 39.4 2.6 8.9E-05 27.9 -1.9 32 86-118 5-36 (63)
71 1m3v_A FLIN4, fusion of the LI 37.2 18 0.00062 26.1 2.3 32 87-118 4-40 (122)
72 2l4z_A DNA endonuclease RBBP8, 36.3 22 0.00076 25.9 2.6 34 86-119 59-97 (123)
73 2k3r_A Ribonuclease P protein 36.1 16 0.00056 27.0 1.9 30 89-118 61-97 (123)
74 2gmg_A Hypothetical protein PF 35.7 6.4 0.00022 28.7 -0.4 29 87-120 66-94 (105)
75 1dl6_A Transcription factor II 35.2 16 0.00055 23.4 1.5 29 87-118 10-38 (58)
76 2x5r_A Hypothetical protein OR 34.7 21 0.00073 25.4 2.2 33 86-118 75-111 (127)
77 2kdx_A HYPA, hydrogenase/ureas 34.5 12 0.0004 27.3 0.8 29 87-121 72-101 (119)
78 4hc9_A Trans-acting T-cell-spe 33.6 8.6 0.0003 28.3 -0.0 32 86-118 57-88 (115)
79 1vd4_A Transcription initiatio 33.1 16 0.00054 22.6 1.2 34 86-119 12-48 (62)
80 2epr_A POZ-, at HOOK-, and zin 32.4 2.9 0.0001 24.4 -2.4 33 86-118 10-48 (48)
81 3j21_g 50S ribosomal protein L 32.1 16 0.00053 23.1 1.0 29 86-122 12-40 (51)
82 2elx_A Zinc finger protein 406 31.7 16 0.00056 18.9 1.0 12 107-118 4-15 (35)
83 2kvh_A Zinc finger and BTB dom 31.4 15 0.00052 17.8 0.8 10 109-118 2-11 (27)
84 1rfh_A RAS association (ralgds 31.1 29 0.00099 22.0 2.2 25 86-118 20-44 (59)
85 1a7i_A QCRP2 (LIM1); LIM domai 31.0 33 0.0011 22.5 2.7 32 87-118 6-42 (81)
86 2d8z_A Four and A half LIM dom 30.4 35 0.0012 21.5 2.6 32 86-118 3-39 (70)
87 1twf_I B12.6, DNA-directed RNA 29.6 9.5 0.00032 28.2 -0.4 32 87-118 3-34 (122)
88 1srk_A Zinc finger protein ZFP 29.5 20 0.00067 18.6 1.0 12 107-118 4-15 (35)
89 3a43_A HYPD, hydrogenase nicke 29.4 14 0.00049 27.8 0.6 12 87-98 69-80 (139)
90 1x64_A Alpha-actinin-2 associa 29.3 66 0.0023 21.4 4.0 32 86-118 23-59 (89)
91 2js4_A UPF0434 protein BB2007; 29.0 43 0.0015 22.3 2.8 29 86-118 6-34 (70)
92 1x4l_A Skeletal muscle LIM-pro 28.2 34 0.0012 21.8 2.3 33 86-118 3-43 (72)
93 1iml_A CRIP, cysteine rich int 28.1 30 0.001 22.4 2.0 10 90-99 2-11 (76)
94 1x61_A Thyroid receptor intera 28.1 34 0.0012 21.7 2.3 33 86-118 3-41 (72)
95 2fnf_X Putative RAS effector N 27.5 25 0.00087 23.3 1.5 25 86-118 33-57 (72)
96 2jny_A Uncharacterized BCR; st 27.4 45 0.0015 22.0 2.7 29 86-118 8-36 (67)
97 2dj7_A Actin-binding LIM prote 26.8 33 0.0011 22.7 2.0 33 86-118 13-50 (80)
98 2iyb_E Testin, TESS, TES; LIM 26.5 64 0.0022 20.1 3.4 30 89-118 3-40 (65)
99 2lvu_A Zinc finger and BTB dom 32.2 14 0.00048 17.8 0.0 10 110-119 2-11 (26)
100 2fc7_A ZZZ3 protein; structure 25.9 33 0.0011 23.5 1.9 24 88-118 21-44 (82)
101 2j9u_B VPS36, vacuolar protein 25.7 21 0.00071 24.4 0.8 13 108-120 15-27 (76)
102 1j2o_A FLIN2, fusion of rhombo 25.6 41 0.0014 23.8 2.5 31 88-118 3-38 (114)
103 3h0g_L DNA-directed RNA polyme 25.5 17 0.00058 23.9 0.3 28 87-119 20-47 (63)
104 2elq_A Zinc finger protein 406 25.5 24 0.00081 18.5 0.9 11 108-118 7-17 (36)
105 2co8_A NEDD9 interacting prote 25.5 25 0.00086 23.4 1.2 33 86-118 13-50 (82)
106 2elt_A Zinc finger protein 406 25.4 24 0.00081 18.4 0.9 11 108-118 7-17 (36)
107 2els_A Zinc finger protein 406 25.2 24 0.00081 18.5 0.9 11 108-118 7-17 (36)
108 2kvf_A Zinc finger and BTB dom 25.2 22 0.00077 17.2 0.7 9 110-118 3-11 (28)
109 2k4x_A 30S ribosomal protein S 25.0 29 0.001 22.0 1.4 28 88-119 18-45 (55)
110 2m0f_A Zinc finger and BTB dom 24.7 21 0.00073 17.2 0.6 9 110-118 2-10 (29)
111 1tot_A CREB-binding protein; z 24.4 52 0.0018 20.4 2.5 22 88-118 6-27 (52)
112 2kae_A GATA-type transcription 24.2 6.1 0.00021 26.7 -2.1 33 86-118 6-38 (71)
113 2jr6_A UPF0434 protein NMA0874 24.1 56 0.0019 21.6 2.7 29 86-118 6-34 (68)
114 2akl_A PHNA-like protein PA012 23.6 40 0.0014 25.5 2.1 28 86-118 25-52 (138)
115 2emi_A Zinc finger protein 484 23.6 19 0.00064 20.3 0.2 12 107-118 9-20 (46)
116 2elm_A Zinc finger protein 406 23.6 32 0.0011 18.3 1.2 12 107-118 6-17 (37)
117 2elp_A Zinc finger protein 406 23.3 29 0.00098 18.3 1.0 11 108-118 7-17 (37)
118 2elv_A Zinc finger protein 406 23.3 30 0.001 18.1 1.0 11 108-118 7-17 (36)
119 1nh2_C Transcription initiatio 23.2 42 0.0014 23.1 2.0 21 98-118 38-58 (79)
120 1x5w_A Zinc finger protein 64, 23.0 21 0.00073 22.1 0.4 33 86-118 7-45 (70)
121 1nyp_A Pinch protein; LIM doma 23.0 46 0.0016 20.7 2.1 31 87-118 4-39 (66)
122 1zso_A Hypothetical protein; s 22.9 45 0.0015 26.0 2.4 33 88-120 37-80 (164)
123 1rik_A E6APC1 peptide; E6-bind 22.8 27 0.00092 16.9 0.8 9 110-118 2-10 (29)
124 2hf1_A Tetraacyldisaccharide-1 22.8 53 0.0018 21.7 2.4 28 87-118 7-34 (68)
125 2cu8_A Cysteine-rich protein 2 22.7 46 0.0016 21.4 2.1 32 87-118 8-44 (76)
126 1nvp_C Transcription initiatio 22.7 47 0.0016 22.6 2.1 20 98-117 36-55 (76)
127 2epv_A Zinc finger protein 268 22.7 22 0.00076 19.8 0.4 12 107-118 9-20 (44)
128 3m7n_A Putative uncharacterize 22.7 37 0.0013 26.4 1.9 26 88-119 140-165 (179)
129 2lri_C Autoimmune regulator; Z 22.4 17 0.00057 23.9 -0.2 33 86-118 22-58 (66)
130 2eml_A Zinc finger protein 28 22.4 22 0.00075 19.9 0.4 12 107-118 9-20 (46)
131 2lcq_A Putative toxin VAPC6; P 22.4 25 0.00086 26.8 0.8 26 88-119 132-157 (165)
132 2xzm_5 Ribosomal protein S26E 22.2 40 0.0014 24.9 1.8 17 82-98 14-30 (119)
133 2kvg_A Zinc finger and BTB dom 21.8 27 0.00091 17.0 0.6 9 110-118 3-11 (27)
134 1twf_J DNA-directed RNA polyme 21.6 25 0.00087 23.6 0.6 14 87-100 3-16 (70)
135 2m0d_A Zinc finger and BTB dom 21.5 28 0.00095 16.8 0.6 9 110-118 3-11 (30)
136 3iuf_A Zinc finger protein UBI 21.3 31 0.001 19.9 0.9 12 107-118 4-15 (48)
137 3u5c_a 40S ribosomal protein S 21.1 44 0.0015 24.7 1.8 17 82-98 14-30 (119)
138 2el5_A Zinc finger protein 268 21.1 33 0.0011 18.6 1.0 12 107-118 7-18 (42)
139 2ept_A Zinc finger protein 32; 21.0 35 0.0012 18.4 1.0 12 107-118 7-18 (41)
140 2em4_A Zinc finger protein 28 21.0 25 0.00087 19.7 0.4 12 107-118 9-20 (46)
141 1k81_A EIF-2-beta, probable tr 20.7 90 0.0031 17.8 2.8 7 112-118 23-29 (36)
142 2epc_A Zinc finger protein 32; 20.6 37 0.0012 18.3 1.1 12 107-118 8-19 (42)
143 2fiy_A Protein FDHE homolog; F 20.6 49 0.0017 28.3 2.3 30 87-118 181-216 (309)
144 1ef4_A Subunit N, DNA-directed 20.4 24 0.00083 22.6 0.3 12 88-99 3-14 (55)
145 1njq_A Superman protein; zinc- 20.3 33 0.0011 18.4 0.8 11 108-118 4-14 (39)
146 1nui_A DNA primase/helicase; z 20.2 49 0.0017 26.8 2.2 28 88-118 14-41 (255)
147 1x62_A C-terminal LIM domain p 20.1 50 0.0017 21.5 1.9 33 86-119 13-50 (79)
No 1
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=7.1e-56 Score=429.73 Aligned_cols=199 Identities=33% Similarity=0.684 Sum_probs=185.0
Q ss_pred eEEeccCCCCcCCCCCCcceeEecCCCCCCCCeeEeeccccCCCHHhhhhcCCceEEEEecCCCCCCCCCCCceeccCCC
Q 028291 7 ILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGES 86 (211)
Q Consensus 7 ~~~~t~~~~~~~~pp~~~~~~~~~d~gn~~p~~iR~T~~~~P~t~~~~~~~~iPlg~vv~Pf~~~~~~e~~vP~v~~~~~ 86 (211)
..|.|..++ ..||++++.|+..|||||+|+|||+|||+||.+++++++++||||++|+||++..+.|.++|+|++++.
T Consensus 19 ~~~~t~~~~--~~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~ 96 (770)
T 3efo_B 19 QVYATNTRG--QIPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGES 96 (770)
T ss_dssp SEEETTSSS--CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTT
T ss_pred CCccCCCCC--CCCCCCCCceeeeecCCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCC
Confidence 478898655 469999999999999999999999999999999999999999999999999998877778999999999
Q ss_pred CceecCCCCeEEccceEEEeCCceEEEecCCCC--------------CcccCCCCCCCCCCcceEEEechhhh--ccCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD--------------GRCLDADERPELCRGTVEFAASREFM--MRNVM 150 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~--------------~~~~d~~~rpEL~~~tvE~~~p~~y~--~r~~~ 150 (211)
+|+||++|||||||||+|+.+|++|+||||+.. |.|.|.++||||.+|+|||++|.||+ .|+|.
T Consensus 97 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~~~~~~p~ 176 (770)
T 3efo_B 97 GPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSKPPN 176 (770)
T ss_dssp CSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGSGGGSCCC
T ss_pred CCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchHhhccccccccccccccCcccccCceeeecCHHHhccCCCCC
Confidence 999999999999999999999999999999981 44567889999999999999999998 48999
Q ss_pred CcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCCCCC------cEEEEEEeCCeEEEeecCC
Q 028291 151 PPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINI------FVVGLLKLKIWWMCILYGN 207 (211)
Q Consensus 151 pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp~~~------~~Vg~Itfd~~i~~~~~~~ 207 (211)
||+|+||||+|.+++++|++++++++|+++|+.||+++ ++|||||||++|+.+.++.
T Consensus 177 pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~ 239 (770)
T 3efo_B 177 PPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNKVLHFFNVKS 239 (770)
T ss_dssp CCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESSSEEEEECCT
T ss_pred CcEEEEEEEcchhhccchHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCCEEEEEeCCC
Confidence 99999999999999999999999999999999999752 7999999999999998864
No 2
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=8.2e-56 Score=429.10 Aligned_cols=199 Identities=37% Similarity=0.686 Sum_probs=186.1
Q ss_pred eEEeccCCCCcCCCCCCcceeEecCCCCCCCCeeEeeccccCCCHHhhhhcCCceEEEEecCCCCCCCCCCCceeccCCC
Q 028291 7 ILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGES 86 (211)
Q Consensus 7 ~~~~t~~~~~~~~pp~~~~~~~~~d~gn~~p~~iR~T~~~~P~t~~~~~~~~iPlg~vv~Pf~~~~~~e~~vP~v~~~~~ 86 (211)
-.|.|.+++ ..||+++++|+..|+|||+|+|||+|||+||.+++++++++||||++|+||++..+.|.++|++++++.
T Consensus 15 ~~f~t~~~~--~~pP~~~t~~~~~d~gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~ 92 (766)
T 3eh2_A 15 EPFVTGVRG--QVPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGES 92 (766)
T ss_dssp SEEETTSTT--CCCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGG
T ss_pred CCcccCCCC--CCCCCCCCceEeeccCCCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCC
Confidence 378999765 469999999999999999999999999999999999999999999999999998887888999999889
Q ss_pred CceecCCCCeEEccceEEEeCCceEEEecCCC--------------CCcccCCCCCCCCCCcceEEEechhhhc--cCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--------------DGRCLDADERPELCRGTVEFAASREFMM--RNVM 150 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~--------------~~~~~d~~~rpEL~~~tvE~~~p~~y~~--r~~~ 150 (211)
+|+||++|||||||||+|+++|++|+||||+. .|.|.|.++||||..|+|||++|.||+. |+|.
T Consensus 93 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~~~p~ 172 (766)
T 3eh2_A 93 GPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPS 172 (766)
T ss_dssp CCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGGSCCC
T ss_pred CCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHHHhccccccccccccccCcccccCceeeecCHhhccCCCCCC
Confidence 99999999999999999999999999999999 1446778999999999999999999986 8999
Q ss_pred CcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCCCCC------cEEEEEEeCCeEEEeecCC
Q 028291 151 PPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINI------FVVGLLKLKIWWMCILYGN 207 (211)
Q Consensus 151 pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp~~~------~~Vg~Itfd~~i~~~~~~~ 207 (211)
||+|+||||+|.+++++|++++++++|+++|+.||+++ ++|||||||++|+.+.++.
T Consensus 173 pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~ 235 (766)
T 3eh2_A 173 PPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNKVLHFYNVKS 235 (766)
T ss_dssp CCEEEEEEECSHHHHHTTHHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESSSEEEEECCT
T ss_pred CCEEEEEEECchhhccchHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCCEEEEEECCC
Confidence 99999999999999999999999999999999999751 7999999999999999874
No 3
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=1.3e-50 Score=394.88 Aligned_cols=182 Identities=29% Similarity=0.542 Sum_probs=168.7
Q ss_pred cceeEecCCCCCCCCeeEeeccccCCCHHhhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCCCCeEEccceE
Q 028291 24 TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFME 103 (211)
Q Consensus 24 ~~~~~~~d~gn~~p~~iR~T~~~~P~t~~~~~~~~iPlg~vv~Pf~~~~~~e~~vP~v~~~~~~p~RC~~C~aYiNp~~~ 103 (211)
++.|+..|+||++|+|||+|||+||.+++++++++||||++|+||++..+.++++|+++ ..+|+||++|+|||||||+
T Consensus 50 ~~~~~~~d~~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~--~~~pvRC~~CrayiNPf~~ 127 (810)
T 1pcx_A 50 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNE--DGLIVRCRRCRSYMNPFVT 127 (810)
T ss_dssp GGSSSCSGGGSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEEC--SCCCCBCTTTCCBCCTTCE
T ss_pred CCccccccCCCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccC--CCCCCccCCccCEecCceE
Confidence 48899999999999999999999999999999999999999999999876677799987 3459999999999999999
Q ss_pred EEeCCceEEEecCCCC------------CcccCCCCCCCCCCcceEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHH
Q 028291 104 FVDNGKSFVCNFCGLD------------GRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATA 171 (211)
Q Consensus 104 ~~~~g~~w~C~~C~~~------------~~~~d~~~rpEL~~~tvE~~~p~~y~~r~~~pp~yvFvIDvS~~a~~~g~l~ 171 (211)
|+.+|++|+||||++. |.+.|.++||||++++|||++|++|+.|++.||+|+||||+|..++++|+++
T Consensus 128 ~~~~g~~W~C~~C~~~N~~P~~y~~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~~~~p~pp~yvFvIDvs~~av~~g~l~ 207 (810)
T 1pcx_A 128 FIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLA 207 (810)
T ss_dssp EETTTTEEECTTTCCEEECCGGGGC-----CCCGGGSHHHHCSEEEEECCGGGCSSCCCCCEEEEEEECSHHHHHHTHHH
T ss_pred EeCCCCEEEccCCCCcCCCchhhccccccCccccccCccccCceEEEEcCchhccCCCCCcEEEEEEECChHHHhhhHHH
Confidence 9999999999999992 3456788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC--cEEEEEEeCCeEEEeecCC
Q 028291 172 AACSAIMQVISDLPINI--FVVGLLKLKIWWMCILYGN 207 (211)
Q Consensus 172 ~v~~sL~~~l~~lp~~~--~~Vg~Itfd~~i~~~~~~~ 207 (211)
+++++|+++|+.||+++ ++|||||||++|+.+.++.
T Consensus 208 ~~~~si~~~L~~Lp~~~~~~~VGlITfd~~V~~~~l~~ 245 (810)
T 1pcx_A 208 TTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPL 245 (810)
T ss_dssp HHHHHHHHHTTTSCCTTSCCEEEEEEESSSEEEEECCC
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCc
Confidence 99999999999999842 8999999999999998874
No 4
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=1.8e-50 Score=397.35 Aligned_cols=182 Identities=29% Similarity=0.542 Sum_probs=169.6
Q ss_pred cceeEecCCCCCCCCeeEeeccccCCCHHhhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCCCCeEEccceE
Q 028291 24 TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFME 103 (211)
Q Consensus 24 ~~~~~~~d~gn~~p~~iR~T~~~~P~t~~~~~~~~iPlg~vv~Pf~~~~~~e~~vP~v~~~~~~p~RC~~C~aYiNp~~~ 103 (211)
++.|+..|+|||+|+|||+|||+||.+++++++++||||++|+||++..+.++++|+++ ..+|+||++|+|||||||+
T Consensus 166 ~~~~~~~d~gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~--~~~pvRC~rCrAYiNPf~~ 243 (926)
T 1m2v_B 166 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNE--DGLIVRCRRCRSYMNPFVT 243 (926)
T ss_dssp GGSSSCSSSSSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEEC--SCCCCBCSSSCCBCCTTCE
T ss_pred CcccccccCCCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccC--CCCCCccCCccCEecCceE
Confidence 48899999999999999999999999999999999999999999999876677799987 3459999999999999999
Q ss_pred EEeCCceEEEecCCCC------------CcccCCCCCCCCCCcceEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHH
Q 028291 104 FVDNGKSFVCNFCGLD------------GRCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATA 171 (211)
Q Consensus 104 ~~~~g~~w~C~~C~~~------------~~~~d~~~rpEL~~~tvE~~~p~~y~~r~~~pp~yvFvIDvS~~a~~~g~l~ 171 (211)
|+.+|++|+||||++. |.+.|.++||||++++|||++|++|+.|++.||+|+||||+|..++++|+++
T Consensus 244 ~~~~g~~W~CnfC~~~N~~P~~Y~~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~~r~p~ppvyvFvIDvS~~av~~g~l~ 323 (926)
T 1m2v_B 244 FIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQPPPATYCFLIDVSQSSIKSGLLA 323 (926)
T ss_dssp EETTTTEEECTTTCCEEECCGGGTTTSTTCGGGGGGSHHHHCSEEEEECCGGGCSSCCCCCBEEEEEECSHHHHHSCHHH
T ss_pred EeCCCCEEEccCCCCCCCCchhhccccccCccccccCccccCceEEEEcChhhccCCCCCcEEEEEEECCHHHHhhhHHH
Confidence 9999999999999982 3456788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC--cEEEEEEeCCeEEEeecCC
Q 028291 172 AACSAIMQVISDLPINI--FVVGLLKLKIWWMCILYGN 207 (211)
Q Consensus 172 ~v~~sL~~~l~~lp~~~--~~Vg~Itfd~~i~~~~~~~ 207 (211)
+++++|+++|+.||+++ ++|||||||++|+.+.++.
T Consensus 324 ~l~~sI~~~L~~LP~~~~~~~VGlITFds~Vh~y~l~~ 361 (926)
T 1m2v_B 324 TTINTLLQNLDSIPNHDERTRISILCVDNAIHYFKIPL 361 (926)
T ss_dssp HHHHHHHHTTTTSCCTTSCCEECEEEESSSEEEEECCC
T ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEecCC
Confidence 99999999999999842 8999999999999998875
No 5
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=2.7e-49 Score=382.73 Aligned_cols=171 Identities=32% Similarity=0.618 Sum_probs=156.2
Q ss_pred CCCCCCCCeeEeeccccCCCHHhhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCCCCeEEccceEEEeCCce
Q 028291 31 DTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKS 110 (211)
Q Consensus 31 d~gn~~p~~iR~T~~~~P~t~~~~~~~~iPlg~vv~Pf~~~~~~e~~vP~v~~~~~~p~RC~~C~aYiNp~~~~~~~g~~ 110 (211)
++|||+|+|||+|||+||.+++++++++||||++|+||++.. ++|+++ ..+|+||++|||||||||+| .+|++
T Consensus 34 ~~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~----~~P~v~--~~~p~RC~rCrayiNPf~~f-~~~~~ 106 (751)
T 3eh1_A 34 KKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLT----QLPVIT--SNTIVRCRSCRTYINPFVSF-IDQRR 106 (751)
T ss_dssp HHHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCS----CCCEEC--CSCCCBCTTTCCBCCTTCEE-SSSSE
T ss_pred cccCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCC----CCCccC--CCCCCcccCccCEeCCceEE-ecCCE
Confidence 489999999999999999999999999999999999999864 389887 35799999999999999999 45789
Q ss_pred EEEecCCCCC-------------cccCCCCCCCCCCcceEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHHHHHHHH
Q 028291 111 FVCNFCGLDG-------------RCLDADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAI 177 (211)
Q Consensus 111 w~C~~C~~~~-------------~~~d~~~rpEL~~~tvE~~~p~~y~~r~~~pp~yvFvIDvS~~a~~~g~l~~v~~sL 177 (211)
|+||||+..| .+.|.++||||++|||||++|++|+.|++.||+|+||||+|.+++++|++++++++|
T Consensus 107 w~Cn~C~~~N~~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~p~pp~yvFvIDvs~~a~~~g~l~~~~~sl 186 (751)
T 3eh1_A 107 WKCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYMLRPPQPAVYLFVLDVSHNAVEAGYLTILCQSL 186 (751)
T ss_dssp EECTTTCCEEECCGGGC---------CGGGSHHHHCSEEEEEECGGGCSSSCCCCEEEEEEECSHHHHHHTHHHHHHHHH
T ss_pred EEcccccCCCCCCHHHhcccccccccCcccCchhccceEEEEcChhhhcCCCCCcEEEEEEEccHhhhhhhHHHHHHHHH
Confidence 9999999821 134678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCC-cEEEEEEeCCeEEEeecCCc
Q 028291 178 MQVISDLPINI-FVVGLLKLKIWWMCILYGNE 208 (211)
Q Consensus 178 ~~~l~~lp~~~-~~Vg~Itfd~~i~~~~~~~~ 208 (211)
+++|+.||++. ++|||||||++|+.+.++..
T Consensus 187 ~~~L~~lp~~~~~~VG~ITfd~~vh~y~l~~~ 218 (751)
T 3eh1_A 187 LENLDKLPGDSRTRIGFMTFDSTIHFYNLQEG 218 (751)
T ss_dssp HHHTTTSSCCTTCEEEEEEESSSEEEEECCTT
T ss_pred HHHHHhcCCCcCcEEEEEEeCCEEEEEECCCC
Confidence 99999999985 69999999999999998743
No 6
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=5e-43 Score=339.91 Aligned_cols=169 Identities=22% Similarity=0.320 Sum_probs=151.9
Q ss_pred ceeEecCCCCCCCCeeEeeccccCCCHHhhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCC--CCeEEccce
Q 028291 25 SKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC--CRGYRNPFM 102 (211)
Q Consensus 25 ~~~~~~d~gn~~p~~iR~T~~~~P~t~~~~~~~~iPlg~vv~Pf~~~~~~e~~vP~v~~~~~~p~RC~~--C~aYiNp~~ 102 (211)
.+|...|++|++|+|||+|||+||.+++++++++||||++|+||++.. ++|+++ .+|+||++ |+|||||||
T Consensus 6 ~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~---~~pvRC~~~~CrayiNPf~ 78 (769)
T 2nut_A 6 TTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQ---YEPVLCSRTTCRAVLNPLC 78 (769)
T ss_dssp -CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCS----CCCCBC---SCCCBCSSTTCCCBCCTTS
T ss_pred cchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCC----CCCcCC---CCCCcCCCCCCCeEECCce
Confidence 457677889999999999999999999999999999999999999752 388888 57999999 999999999
Q ss_pred EEEeCCceEEEecCCCCCc----c---cCCCCCCCC--CCcceEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHHHH
Q 028291 103 EFVDNGKSFVCNFCGLDGR----C---LDADERPEL--CRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAA 173 (211)
Q Consensus 103 ~~~~~g~~w~C~~C~~~~~----~---~d~~~rpEL--~~~tvE~~~p~~y~~r~~~pp~yvFvIDvS~~a~~~g~l~~v 173 (211)
+|+.+|++|+||||+..|. + ...+.+||| ++++|||++|++| +.||+|+||||+|..+++ ++++
T Consensus 79 ~~~~~~~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~----p~pp~~vFvIDvS~~a~~---l~~l 151 (769)
T 2nut_A 79 QVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGP----QMPLIFLYVVDTCMEDED---LQAL 151 (769)
T ss_dssp EEETTTTEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSC----CCCCEEEEEEECCSCHHH---HHHH
T ss_pred EEeCCCCEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCC----CCCCEEEEEEECCccHHH---HHHH
Confidence 9999999999999999432 2 224678899 8999999999987 789999999999999886 7899
Q ss_pred HHHHHHHHhcCCCCCcEEEEEEeCCeEEEeecCCc
Q 028291 174 CSAIMQVISDLPINIFVVGLLKLKIWWMCILYGNE 208 (211)
Q Consensus 174 ~~sL~~~l~~lp~~~~~Vg~Itfd~~i~~~~~~~~ 208 (211)
+++|+++|+.||++ ++|||||||++|+.+.++.+
T Consensus 152 ~~si~~~L~~Lp~~-~~VGlITf~~~v~~y~l~~~ 185 (769)
T 2nut_A 152 KESMQMSLSLLPPT-ALVGLITFGRMVQVHELGCE 185 (769)
T ss_dssp HHHHHHHHTTSCTT-CEEEEEEESSEEEEEESSCC
T ss_pred HHHHHHHHHhCCCC-ceEEEEEeCCEEEEEeCCCC
Confidence 99999999999999 79999999999999998864
No 7
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=1.3e-41 Score=330.02 Aligned_cols=160 Identities=21% Similarity=0.359 Sum_probs=144.8
Q ss_pred CCCCCeeEeeccccCCCHHhhhhcCCceEEEEecCCCCCCCCCCCceeccCCCCceecCC--CCeEEccceEEEeCCceE
Q 028291 34 NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC--CRGYRNPFMEFVDNGKSF 111 (211)
Q Consensus 34 n~~p~~iR~T~~~~P~t~~~~~~~~iPlg~vv~Pf~~~~~~e~~vP~v~~~~~~p~RC~~--C~aYiNp~~~~~~~g~~w 111 (211)
|++|+|||+|||+||.+++++++++||||++|+||++.. ++|+++ .+|+||++ |+|||||||+|+.+|++|
T Consensus 6 ~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~---~~pvRC~~~~CrayiNPf~~~~~~~~~W 78 (768)
T 1m2o_A 6 NEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYD----ELNVAP---YNPVVCSGPHCKSILNPYCVIDPRNSSW 78 (768)
T ss_dssp HHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCT----TCCEEC---SCCCBCCSTTTCCBCCTTSCEETTTTEE
T ss_pred ccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCC----CCCcCC---CCCCccCCCCCCeEECCceEEeCCCCEE
Confidence 788999999999999999999999999999999999752 489987 57999999 999999999999999999
Q ss_pred EEecCCCCCc----cc---CCCCCCCCCCcceEEEechhhhccCCCCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcC
Q 028291 112 VCNFCGLDGR----CL---DADERPELCRGTVEFAASREFMMRNVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDL 184 (211)
Q Consensus 112 ~C~~C~~~~~----~~---d~~~rpEL~~~tvE~~~p~~y~~r~~~pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~l 184 (211)
+||||+..|. +. ..+.+|||+++||||++|. +++.||+|+||||+|..+++ +++++++|+++|+.|
T Consensus 79 ~C~~C~~~N~~P~~y~~~~~~~~~pEL~~~tvEy~~p~----~~~~pp~~vFvIDvs~~~~~---l~~l~~sl~~~L~~L 151 (768)
T 1m2o_A 79 SCPICNSRNHLPPQYTNLSQENMPLELQSTTIEYITNK----PVTVPPIFFFVVDLTSETEN---LDSLKESIITSLSLL 151 (768)
T ss_dssp CCTTTCCCCBCCGGGCC---CCCCGGGTCSEEEEECSC----CCCSCCEEEEEEECCSCHHH---HHHHHHHHHHHHHTS
T ss_pred EcccCCCCCCCChHHccCCcccCChhhccCCEEEECCC----CCCCCCEEEEEEECCcCHHH---HHHHHHHHHHHHHhC
Confidence 9999999543 21 2456899999999999997 57899999999999999875 799999999999999
Q ss_pred CCCCcEEEEEEeCCeEEEeecCCc
Q 028291 185 PINIFVVGLLKLKIWWMCILYGNE 208 (211)
Q Consensus 185 p~~~~~Vg~Itfd~~i~~~~~~~~ 208 (211)
|++ ++|||||||++|+.+.++.+
T Consensus 152 p~~-~~VGlITf~~~V~~y~l~~~ 174 (768)
T 1m2o_A 152 PPN-ALIGLITYGNVVQLHDLSSE 174 (768)
T ss_dssp CTT-CEEEEEEESSEEEECCCSSS
T ss_pred CCC-CEEEEEEECCEEEEEECCCC
Confidence 999 79999999999999988754
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.42 E-value=4.5e-14 Score=95.04 Aligned_cols=36 Identities=31% Similarity=0.593 Sum_probs=33.4
Q ss_pred CCCceecCC--CCeEEccceEEEeCCceEEEecCCCCC
Q 028291 85 ESGLVRCCC--CRGYRNPFMEFVDNGKSFVCNFCGLDG 120 (211)
Q Consensus 85 ~~~p~RC~~--C~aYiNp~~~~~~~g~~w~C~~C~~~~ 120 (211)
+++|+||++ |+||||||++|+.+|++|+|+||+..+
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N 43 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRN 43 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEE
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcC
Confidence 478999999 999999999999999999999999843
No 9
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=96.68 E-value=0.0045 Score=48.57 Aligned_cols=51 Identities=12% Similarity=0.122 Sum_probs=39.8
Q ss_pred CcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCCCCCcEEEEEEeCCeEEE
Q 028291 151 PPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINIFVVGLLKLKIWWMC 202 (211)
Q Consensus 151 pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp~~~~~Vg~Itfd~~i~~ 202 (211)
+.-.+||||.|. ++...-++.+++.++.+++.+..+..+||+|+|+.....
T Consensus 2 ~~divfvlD~S~-Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~ 52 (179)
T 1mjn_A 2 NVDLVFLFDGSM-SLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKT 52 (179)
T ss_dssp CEEEEEEEECBT-TCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEE
T ss_pred CccEEEEEeCCC-CCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeE
Confidence 456899999986 344334788999999999988433279999999998874
No 10
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=96.59 E-value=0.0059 Score=48.70 Aligned_cols=51 Identities=14% Similarity=0.097 Sum_probs=41.5
Q ss_pred CCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCC---CCCcEEEEEEeCCeEEE
Q 028291 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP---INIFVVGLLKLKIWWMC 202 (211)
Q Consensus 150 ~pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp---~~~~~Vg~Itfd~~i~~ 202 (211)
.+--.+||||.|. ++...-++.++++++.+++.+. +. .+||+|+|+.....
T Consensus 20 ~~~DivfvlD~S~-Sm~~~~~~~~k~~~~~~~~~l~~~~~~-~rv~vv~fs~~~~~ 73 (199)
T 3zqk_A 20 MVLDVAFVLEGSD-KIGEADFNRSKEFMEEVIQRMDVGQDS-IHVTVLQYSYMVTV 73 (199)
T ss_dssp CCCEEEEEEECCT-TTCHHHHHHHHHHHHHHHHHSCBSTTS-BEEEEEEESSSEEE
T ss_pred CCcCEEEEEECCC-CCCHHHHHHHHHHHHHHHHhcCCCCCc-eEEEEEEECCcccE
Confidence 4567999999986 4443457889999999999984 55 79999999998884
No 11
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=96.55 E-value=0.0064 Score=47.55 Aligned_cols=51 Identities=16% Similarity=0.052 Sum_probs=40.5
Q ss_pred CcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCCCC--CcEEEEEEeCCeEEE
Q 028291 151 PPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPIN--IFVVGLLKLKIWWMC 202 (211)
Q Consensus 151 pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp~~--~~~Vg~Itfd~~i~~ 202 (211)
+.-.+||||.|. ++...-++.+++.++.+++.++.. ..+||+|+|+.....
T Consensus 17 ~~divfvlD~Sg-Sm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~ 69 (178)
T 2xgg_A 17 QLDICFLIDSSG-SIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHL 69 (178)
T ss_dssp CEEEEEEEECCT-TTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEE
T ss_pred CeeEEEEEECCC-CCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEE
Confidence 678999999986 443345788999999999988632 279999999998773
No 12
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=96.50 E-value=0.0067 Score=48.49 Aligned_cols=50 Identities=12% Similarity=0.059 Sum_probs=40.8
Q ss_pred CcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCC---CCCcEEEEEEeCCeEEE
Q 028291 151 PPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP---INIFVVGLLKLKIWWMC 202 (211)
Q Consensus 151 pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp---~~~~~Vg~Itfd~~i~~ 202 (211)
+.-.+||||.|. ++...-++.+++.++.+++.+. +. .+||+|+|++....
T Consensus 13 ~~divfvlD~Sg-Sm~~~~~~~~k~~~~~~v~~l~~~~~~-~rv~vv~fs~~~~~ 65 (202)
T 1ijb_A 13 LLDLVFLLDGSS-RLSEAEFEVLKAFVVDMMERLRVSQKW-VRVAVVEYHDGSHA 65 (202)
T ss_dssp CEEEEEEEECBT-TSCHHHHHHHHHHHHHHHHTBCBSTTS-EEEEEEEESSSEEE
T ss_pred cccEEEEEECCC-CCCHHHHHHHHHHHHHHHHhcccCCCc-eEEEEEEECCCceE
Confidence 567999999986 3443457889999999999987 34 79999999998774
No 13
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=96.42 E-value=0.0076 Score=47.32 Aligned_cols=52 Identities=19% Similarity=0.100 Sum_probs=40.7
Q ss_pred CCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCCCC--CcEEEEEEeCCeEEE
Q 028291 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPIN--IFVVGLLKLKIWWMC 202 (211)
Q Consensus 150 ~pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp~~--~~~Vg~Itfd~~i~~ 202 (211)
.+.-.+||||.|.. +...-++.+++.++.+++.++.. ..+||+|+|++....
T Consensus 4 ~~~div~vlD~SgS-m~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~ 57 (189)
T 1atz_A 4 QPLDVILLLDGSSS-FPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTI 57 (189)
T ss_dssp CCEEEEEEEECSSS-SCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEE
T ss_pred CceeEEEEEeCCCC-CChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceE
Confidence 35679999999863 43345788999999999988622 279999999998773
No 14
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=96.35 E-value=0.0074 Score=47.54 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=40.2
Q ss_pred CCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCC-CCCcEEEEEEeCCeEEE
Q 028291 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP-INIFVVGLLKLKIWWMC 202 (211)
Q Consensus 150 ~pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp-~~~~~Vg~Itfd~~i~~ 202 (211)
.+.-.+||||.|. ++...-++.+++.++.+++.+. +. .+||+|+|+.....
T Consensus 4 ~~~div~vlD~Sg-Sm~~~~~~~~k~~~~~~~~~l~~~~-~~v~vv~f~~~~~~ 55 (194)
T 1mf7_A 4 EDSDIAFLIDGSG-SIIPHDFRRMKEFVSTVMEQLKKSK-TLFSLMQYSEEFRI 55 (194)
T ss_dssp CCEEEEEEEECCT-TSCHHHHHHHHHHHHHHHHHHCCTT-EEEEEEEESSSEEE
T ss_pred CCeeEEEEEeCCC-CCCHHHHHHHHHHHHHHHHhcCCCC-eEEEEEEecCCceE
Confidence 4567999999986 4443357888999999998885 44 79999999998773
No 15
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=96.35 E-value=0.014 Score=46.55 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=40.3
Q ss_pred CCCcEEEEEEEcchhhHhhc-----HHHHHHHHHHHHHhcCCCCCcEEEEEEeCCeEE
Q 028291 149 VMPPVYFFLIDVSTDAVQTG-----ATAAACSAIMQVISDLPINIFVVGLLKLKIWWM 201 (211)
Q Consensus 149 ~~pp~yvFvIDvS~~a~~~g-----~l~~v~~sL~~~l~~lp~~~~~Vg~Itfd~~i~ 201 (211)
..+..++||||+|.. +... -++.+++.+...++.++ + .+||+|+|+....
T Consensus 9 ~~~~~iv~vlD~SgS-M~~~d~~~~r~~~ak~~~~~~~~~~~-~-~~v~lv~F~~~~~ 63 (218)
T 3ibs_A 9 RKGVEVIIALDISNS-MLAQDVQPSRLEKAKRLISRLVDELD-N-DKVGMIVFAGDAF 63 (218)
T ss_dssp -CCCEEEEEEECSGG-GGCCSSSSCHHHHHHHHHHHHHHTCS-S-CEEEEEEESSSEE
T ss_pred cCCCcEEEEEECCcC-cccccCCcCHHHHHHHHHHHHHHhCC-C-CeEEEEEECCCce
Confidence 456789999999864 3321 57899999999999998 4 3999999998877
No 16
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=96.27 E-value=0.012 Score=46.29 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=41.1
Q ss_pred CCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcC-CCCCcEEEEEEeCCeEEE
Q 028291 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDL-PINIFVVGLLKLKIWWMC 202 (211)
Q Consensus 150 ~pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~l-p~~~~~Vg~Itfd~~i~~ 202 (211)
.+.-.+||||.|. ++....++.+++.++.+++.+ ++. .+||+|+|+.....
T Consensus 8 ~~~div~vlD~Sg-SM~~~~~~~~~~~~~~~~~~l~~~~-~~v~lv~f~~~~~~ 59 (198)
T 1n3y_A 8 QEQDIVFLIDGSG-SISSRNFATMMNFVRAVISQFQRPS-TQFSLMQFSNKFQT 59 (198)
T ss_dssp CCEEEEEEEECCT-TSCHHHHHHHHHHHHHHHTTSCTTT-EEEEEEEESSSEEE
T ss_pred CCeeEEEEEECCC-CCCHHHHHHHHHHHHHHHHhcCCCC-cEEEEEEeCCCccE
Confidence 4567999999986 444334678999999999999 566 69999999998763
No 17
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=96.19 E-value=0.0074 Score=48.17 Aligned_cols=54 Identities=11% Similarity=0.160 Sum_probs=39.6
Q ss_pred CCCCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCC---CCCcEEEEEEeCCeEEEe
Q 028291 148 NVMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP---INIFVVGLLKLKIWWMCI 203 (211)
Q Consensus 148 ~~~pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp---~~~~~Vg~Itfd~~i~~~ 203 (211)
+..+.-++||||.|. ++....++.++++++.+++.+. .+ .+||+|+|+......
T Consensus 12 ~~~~~div~vlD~Sg-SM~~~~~~~~k~~~~~~i~~l~~~~~~-~~v~lv~f~~~~~~~ 68 (223)
T 1q0p_A 12 PSGSMNIYLVLDGSD-SIGASNFTGAKKSLVNLIEKVASYGVK-PRYGLVTYATYPKIW 68 (223)
T ss_dssp ---CEEEEEEEECST-TTCHHHHHHHHHHHHHHHHHHHTTTCC-CEEEEEEESSSEEEE
T ss_pred CCCceeEEEEEeCCC-CCchHHHHHHHHHHHHHHHHHhcCCCC-ceEEEEEecCcccee
Confidence 346778999999986 4443457888888888876654 34 699999999988744
No 18
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=96.13 E-value=0.01 Score=49.91 Aligned_cols=52 Identities=15% Similarity=0.029 Sum_probs=41.5
Q ss_pred CCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCCCCC--cEEEEEEeCCeEE
Q 028291 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINI--FVVGLLKLKIWWM 201 (211)
Q Consensus 150 ~pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp~~~--~~Vg~Itfd~~i~ 201 (211)
.+.-++||||.|..--...+++.++++++.+++.++... .+||+|+|++...
T Consensus 20 ~~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~ 73 (281)
T 4hqf_A 20 DEVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAR 73 (281)
T ss_dssp SCEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEE
T ss_pred CceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCce
Confidence 466799999998643333455889999999999987621 7999999999886
No 19
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=95.80 E-value=0.024 Score=51.72 Aligned_cols=52 Identities=17% Similarity=0.047 Sum_probs=43.1
Q ss_pred CCcEEEEEEEcchhhHh--hcHHHHHHHHHHHHHhcCCCCCcEEEEEEeCCeEEEe
Q 028291 150 MPPVYFFLIDVSTDAVQ--TGATAAACSAIMQVISDLPINIFVVGLLKLKIWWMCI 203 (211)
Q Consensus 150 ~pp~yvFvIDvS~~a~~--~g~l~~v~~sL~~~l~~lp~~~~~Vg~Itfd~~i~~~ 203 (211)
.+..++||||+|. ++. ..-++.++++++.+++.|+++ .+||+|+|++.....
T Consensus 76 ~~~dvv~VLD~SG-SM~~~~~rl~~ak~a~~~ll~~L~~~-drv~lV~Fs~~a~~~ 129 (464)
T 4fx5_A 76 SENVEVIIIDCSG-SMDYPRTKMMAAKEATKVAIDTLTDG-AFFAVVAGTEGARVV 129 (464)
T ss_dssp CCEEEEEEEECCG-GGGTTTHHHHHHHHHHHHHHHHSCTT-CEEEEEEESSSEEEE
T ss_pred CCceEEEEEEcCc-ccCCCCchHHHHHHHHHHHHHhCCCC-CEEEEEEEcCceEEE
Confidence 3457999999986 444 345899999999999999988 499999999998844
No 20
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=95.77 E-value=0.022 Score=47.58 Aligned_cols=52 Identities=10% Similarity=-0.010 Sum_probs=40.2
Q ss_pred CCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCC---CCCcEEEEEEeCCeEEE
Q 028291 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP---INIFVVGLLKLKIWWMC 202 (211)
Q Consensus 150 ~pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp---~~~~~Vg~Itfd~~i~~ 202 (211)
.+.-.+||||.|..--...+.+.++++++.+++.+. +. .+||+|+|+.....
T Consensus 17 ~~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~-~rvglv~Fs~~~~~ 71 (266)
T 4hqo_A 17 EQVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDT-INLYMNLFGSYTTE 71 (266)
T ss_dssp CCEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTS-EEEEEEEESSSEEE
T ss_pred CceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCC-cEEEEEEecCCcce
Confidence 456799999998643223333578999999999987 44 79999999998873
No 21
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=95.59 E-value=0.029 Score=44.36 Aligned_cols=48 Identities=15% Similarity=0.025 Sum_probs=39.6
Q ss_pred CcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCC---CCCcEEEEEEeCCeEEE
Q 028291 151 PPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP---INIFVVGLLKLKIWWMC 202 (211)
Q Consensus 151 pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp---~~~~~Vg~Itfd~~i~~ 202 (211)
+.-.+||||+|. ++. . ++.+++.++.+++.+. +. .+||+|+|+...+.
T Consensus 6 ~~div~vlD~Sg-Sm~-~-~~~~k~~~~~~~~~l~~~~~~-~rvglv~f~~~~~~ 56 (200)
T 1v7p_C 6 LIDVVVVCDESN-SIY-P-WDAVKNFLEKFVQGLDIGPTK-TQVGLIQYANNPRV 56 (200)
T ss_dssp CEEEEEEEECCT-TCC-C-HHHHHHHHHHHHHTSCBSTTS-EEEEEEEESSSEEE
T ss_pred cccEEEEEECCC-Ccc-c-HHHHHHHHHHHHHhcCCCCCc-eEEEEEEECCCceE
Confidence 567999999987 443 2 7889999999999986 45 79999999998873
No 22
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=95.56 E-value=0.019 Score=48.31 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=38.8
Q ss_pred CCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCCCC--CcEEEEEEeCCe
Q 028291 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPIN--IFVVGLLKLKIW 199 (211)
Q Consensus 150 ~pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp~~--~~~Vg~Itfd~~ 199 (211)
.+..++|+||+|.. ++ +-++.++++++..+.+++.. ..+||+|+|+..
T Consensus 133 ~~~~vvfLVDtSgS-M~-~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~ 182 (242)
T 3rag_A 133 VALHLVVCLDTSAS-MR-DKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGK 182 (242)
T ss_dssp SCEEEEEEEECSGG-GT-TTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCS
T ss_pred CCCCEEEEEECccc-HH-HHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence 56789999999874 44 45899999999999987532 169999999985
No 23
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=95.55 E-value=0.018 Score=52.19 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=41.6
Q ss_pred CCCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcC---CCCCcEEEEEEeCCeEEE
Q 028291 149 VMPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDL---PINIFVVGLLKLKIWWMC 202 (211)
Q Consensus 149 ~~pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~l---p~~~~~Vg~Itfd~~i~~ 202 (211)
..+.-.+||||.|.. +...-++.++++++.+++.| +++ .+||+|+|+.....
T Consensus 7 ~~~~divfvlD~SgS-M~~~~~~~~k~~~~~l~~~l~~~~~~-~rv~lv~f~~~~~~ 61 (509)
T 2odp_A 7 SGHLNLYLLLDASQS-VSENDFLIFKESASLMVDRIFSFEIN-VSVAIITFASEPKV 61 (509)
T ss_dssp SSEEEEEEEEECSTT-SCHHHHHHHHHHHHHHHHHHHTTCCC-EEEEEEEESSSEEE
T ss_pred CCCeeEEEEEeCCCc-cchhhHHHHHHHHHHHHHHhhccCCC-ceEEEEEccCCCce
Confidence 356779999999864 43335788999999999887 566 69999999998874
No 24
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=95.09 E-value=0.016 Score=45.21 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=36.3
Q ss_pred CCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcC-CCCCcEEEEEEeCC
Q 028291 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDL-PINIFVVGLLKLKI 198 (211)
Q Consensus 150 ~pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~l-p~~~~~Vg~Itfd~ 198 (211)
.+...+||||+|.. +...-++.+++++...++.+ +.. .+||+|+|+.
T Consensus 4 ~~~~vv~vlD~SgS-M~~~~~~~~k~~~~~~~~~~~~~~-~~v~lv~f~~ 51 (189)
T 2x31_A 4 SDRVLIFAVDASGS-AAVARLSEAKGAVELLLGRAYAAR-DHVSLITFRG 51 (189)
T ss_dssp SCCEEEEEEECCTT-SCC--CHHHHHHHHHHHHHSCTTT-SCCCEEEESB
T ss_pred CCeEEEEEEECCCC-CCchHHHHHHHHHHHHHHHhcCCC-cEEEEEEECC
Confidence 45679999999864 33235688999999999877 666 5999999996
No 25
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=95.08 E-value=0.077 Score=40.89 Aligned_cols=50 Identities=10% Similarity=0.037 Sum_probs=36.3
Q ss_pred CcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCCCCCcEEEEEEeCCeEEE
Q 028291 151 PPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINIFVVGLLKLKIWWMC 202 (211)
Q Consensus 151 pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp~~~~~Vg~Itfd~~i~~ 202 (211)
+.-.+||||.|. ++... ++.+++.++++++.+-....+||+|+|+.....
T Consensus 7 ~~div~vlD~Sg-SM~~~-~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~ 56 (185)
T 3n2n_F 7 GFDLYFILDKSG-SVLHH-WNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTT 56 (185)
T ss_dssp EEEEEEEEECSG-GGGGG-HHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEE
T ss_pred CeeEEEEEeCCC-Chhhh-HHHHHHHHHHHHHHhCCCCcEEEEEEEecCceE
Confidence 456899999986 44332 566777777777765332279999999998873
No 26
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=95.07 E-value=0.053 Score=43.26 Aligned_cols=49 Identities=8% Similarity=0.049 Sum_probs=39.2
Q ss_pred CCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCC---CCCcEEEEEEeCCeEEE
Q 028291 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP---INIFVVGLLKLKIWWMC 202 (211)
Q Consensus 150 ~pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp---~~~~~Vg~Itfd~~i~~ 202 (211)
.+.-.+||||.|. ++. + ++.+++.++.+++.+. ++ .+||+|+|+.....
T Consensus 6 ~~~div~vlD~Sg-Sm~-~-~~~~k~~~~~~~~~l~~~~~~-~~v~lv~F~~~~~~ 57 (213)
T 1pt6_A 6 TQLDIVIVLDGSN-SIY-P-WDSVTAFLNDLLKRMDIGPKQ-TQVGIVQYGENVTH 57 (213)
T ss_dssp -CEEEEEEEECCT-TCC-C-HHHHHHHHHHHHTTSCBSTTS-BEEEEEEESSSEEE
T ss_pred CCccEEEEEECCC-Chh-h-HHHHHHHHHHHHHhcCCCCCC-eEEEEEEeCCCccE
Confidence 3567999999986 443 2 6889999999999875 45 79999999998873
No 27
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=94.96 E-value=0.046 Score=44.03 Aligned_cols=49 Identities=8% Similarity=0.047 Sum_probs=39.3
Q ss_pred CCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCC---CCCcEEEEEEeCCeEEE
Q 028291 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP---INIFVVGLLKLKIWWMC 202 (211)
Q Consensus 150 ~pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp---~~~~~Vg~Itfd~~i~~ 202 (211)
.+.-.+||||+|. ++. + ++.+++.++.+++.+. ++ .+||+|+|+...+.
T Consensus 21 ~~~div~vlD~Sg-SM~-~-~~~~k~~~~~~~~~l~~~~~~-~rv~lv~F~~~~~~ 72 (223)
T 2b2x_A 21 TQLDIVIVLDGSN-SIY-P-WESVIAFLNDLLKRMDIGPKQ-TQVGIVQYGENVTH 72 (223)
T ss_dssp -CEEEEEEEECST-TCC-C-HHHHHHHHHHHHTTSCCSTTS-CCEEEEEESSSEEE
T ss_pred CcceEEEEEECCC-Chh-h-HHHHHHHHHHHHHhcccCCCC-eEEEEEEeCCCccE
Confidence 3567999999987 343 2 7889999999999885 44 69999999998873
No 28
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=94.64 E-value=0.14 Score=39.18 Aligned_cols=49 Identities=10% Similarity=0.105 Sum_probs=32.6
Q ss_pred CCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcC-CCCCcEEEEEEeCCeEE
Q 028291 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDL-PINIFVVGLLKLKIWWM 201 (211)
Q Consensus 150 ~pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~l-p~~~~~Vg~Itfd~~i~ 201 (211)
.+.-.+||||.|.. +..... ..++.++.++..+ .++ .+||+|+|+....
T Consensus 5 ~~~dvv~vlD~SgS-M~~~~~-~~~~~~~~~~~~~~~~~-~~v~lv~f~~~~~ 54 (182)
T 1shu_X 5 RAFDLYFVLDKSGS-VANNWI-EIYNFVQQLAERFVSPE-MRLSFIVFSSQAT 54 (182)
T ss_dssp SCEEEEEEEECSGG-GGGGHH-HHHHHHHHHHHHCCCTT-EEEEEEEESSSEE
T ss_pred CceeEEEEEECCCC-cccCHH-HHHHHHHHHHHHhcCCC-ceEEEEEeCCCce
Confidence 45679999999863 333322 2455555555543 234 6999999998876
No 29
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=94.38 E-value=0.042 Score=49.39 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=37.8
Q ss_pred cEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCC---CCCcEEEEEEeCCeEEEe
Q 028291 152 PVYFFLIDVSTDAVQTGATAAACSAIMQVISDLP---INIFVVGLLKLKIWWMCI 203 (211)
Q Consensus 152 p~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp---~~~~~Vg~Itfd~~i~~~ 203 (211)
.-.+||||.|.. +...-++.++++++.+++.++ .. .+||+|+|+...+..
T Consensus 2 ~div~vlD~SgS-M~~~~~~~~k~~~~~~~~~l~~~~~~-~~v~lv~f~~~~~~~ 54 (497)
T 1rrk_A 2 MNIYLVLDGSDS-IGASNFTGAKKVLVNLIEKVASYGVK-PRYGLVTYATYPKIW 54 (497)
T ss_dssp EEEEEEEECSTT-TCHHHHHHHHHHHHHHHHHHHHTTCC-CEEEEEEESSSEEEE
T ss_pred eeEEEEEECCCC-cchhhHHHHHHHHHHHHHHhhccCCC-ceEEEEEecCCceEe
Confidence 458999999863 433457888888888888654 35 699999999987743
No 30
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=93.93 E-value=0.053 Score=51.25 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=39.3
Q ss_pred CCcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCCCCC--cEEEEEEeCCeEE
Q 028291 150 MPPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINI--FVVGLLKLKIWWM 201 (211)
Q Consensus 150 ~pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp~~~--~~Vg~Itfd~~i~ 201 (211)
.+.-++||||.|. ++...-++.++++++.+++.+.... .+||+|+|++...
T Consensus 242 ~~~div~vlD~Sg-SM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~ 294 (741)
T 3hrz_D 242 GSMNIYLVLDGSG-SIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPK 294 (741)
T ss_dssp CEEEEEEEEECST-TTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEE
T ss_pred CceeEEEEeccCC-cccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCc
Confidence 4567999999986 4433347889999999988775321 6999999999776
No 31
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=93.17 E-value=0.18 Score=50.63 Aligned_cols=51 Identities=20% Similarity=0.179 Sum_probs=42.1
Q ss_pred CcEEEEEEEcchhhHhhcHHHHHHHHHHHHHhcCCCCCcEEEEEEeCCeEEE
Q 028291 151 PPVYFFLIDVSTDAVQTGATAAACSAIMQVISDLPINIFVVGLLKLKIWWMC 202 (211)
Q Consensus 151 pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l~~lp~~~~~Vg~Itfd~~i~~ 202 (211)
+.-.+||||.|. ++...-++.++++++.+++.+..+..+||+|+|++....
T Consensus 130 ~~DIvfvlD~Sg-Sm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~ 180 (1095)
T 3k6s_A 130 EQDIVFLIDGSG-SISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQT 180 (1095)
T ss_dssp CEEEEEEEECCT-TSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEE
T ss_pred CccEEEEEcCCC-CCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEE
Confidence 456899999986 455445789999999999998765479999999998874
No 32
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.41 E-value=0.38 Score=40.88 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=30.8
Q ss_pred EEEEEEEcchhhHhhc-----HHHHHHHHHHHHHhc---CCCCCcEEEEEEeCC
Q 028291 153 VYFFLIDVSTDAVQTG-----ATAAACSAIMQVISD---LPINIFVVGLLKLKI 198 (211)
Q Consensus 153 ~yvFvIDvS~~a~~~g-----~l~~v~~sL~~~l~~---lp~~~~~Vg~Itfd~ 198 (211)
+-|||||+|.. +..| -+++.++++..+++. ...+ -+||||+|..
T Consensus 5 AtViviD~S~S-M~~~D~~PsRl~a~k~Av~~li~~~~~~nPe-d~VGLVtfag 56 (268)
T 4b4t_W 5 ATVLVIDNSEY-SRNGDFPRTRFEAQIDSVEFIFQAKRNSNPE-NTVGLISGAG 56 (268)
T ss_dssp EEEEEECCSST-TSSTTSSSCHHHHHHHHHHHHHHHHHHHCTT-CEEEEEECCT
T ss_pred eEEEEEECCHH-HhCCCCCCcHHHHHHHHHHHHHHHHhhCCCc-ceEEEEEecC
Confidence 47999999864 3322 367788887777764 3344 3999999964
No 33
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=88.60 E-value=0.85 Score=42.29 Aligned_cols=47 Identities=11% Similarity=0.032 Sum_probs=34.6
Q ss_pred cEEEEEEEcchhhHh-----hcHHHHHHHHHHHHHhc---CCCCCcEEEEEEeCCe
Q 028291 152 PVYFFLIDVSTDAVQ-----TGATAAACSAIMQVISD---LPINIFVVGLLKLKIW 199 (211)
Q Consensus 152 p~yvFvIDvS~~a~~-----~g~l~~v~~sL~~~l~~---lp~~~~~Vg~Itfd~~ 199 (211)
=..+|+||+|..-.+ ..-|+.+++++...++. ...++ +||+|+|++.
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D-~vGlv~f~~~ 62 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKD-EIALVLFGTD 62 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCC-EEEEEEESCS
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCC-EEEEEEEccC
Confidence 368999999964322 13578899999999884 34443 9999999853
No 34
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=87.92 E-value=0.55 Score=46.25 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=36.9
Q ss_pred CCCcEEEEEEEcchhhHhhc-----HHHHHHHHHHHHHhcCCC--CCcEEEEEEeCCeE
Q 028291 149 VMPPVYFFLIDVSTDAVQTG-----ATAAACSAIMQVISDLPI--NIFVVGLLKLKIWW 200 (211)
Q Consensus 149 ~~pp~yvFvIDvS~~a~~~g-----~l~~v~~sL~~~l~~lp~--~~~~Vg~Itfd~~i 200 (211)
..+--.+||||+|..-.... -++.++++++.+|+.|.. + .+||||+|+..+
T Consensus 222 ~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~-drVgLV~Fs~~a 279 (893)
T 2ww8_A 222 SVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSE-NRVALVTYASTI 279 (893)
T ss_dssp TCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTT-CEEEEEEESSSB
T ss_pred CCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCC-cEEEEEEecCcc
Confidence 46778999999996422222 256678888888876643 4 599999999865
No 35
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=87.06 E-value=0.13 Score=33.90 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=20.3
Q ss_pred CceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
...-|.+|++++.- ....-+|+||+|..
T Consensus 32 k~r~CaRCGg~v~l----r~~k~~WvC~lC~k 59 (62)
T 2a20_A 32 QTKFCARCGGRVSL----RSNKVMWVCNLCRK 59 (62)
T ss_dssp CCEECTTSEEEEES----STTCEEEEEHHHHH
T ss_pred CCeeecccCCEeee----cCCeEEEEehhhhh
Confidence 35667889888654 34567899999953
No 36
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=86.80 E-value=1.1 Score=35.73 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=28.9
Q ss_pred EEEEEEEcchhhHhhc----HHHHHHHHHHHHH----hcCCCCCcEEEEEEeCC
Q 028291 153 VYFFLIDVSTDAVQTG----ATAAACSAIMQVI----SDLPINIFVVGLLKLKI 198 (211)
Q Consensus 153 ~yvFvIDvS~~a~~~g----~l~~v~~sL~~~l----~~lp~~~~~Vg~Itfd~ 198 (211)
+.+|+||+|..-.... -++..++.+...+ +.-|++ +||+|+|+.
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d--~vGLV~fa~ 55 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPEN--MCGLMTIGD 55 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTC--EEEEEECCT
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC--eEEEEEEcC
Confidence 5799999986432211 2566666665544 344554 999999986
No 37
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=86.56 E-value=1.2 Score=41.76 Aligned_cols=46 Identities=13% Similarity=0.123 Sum_probs=35.0
Q ss_pred EEEEEEEcchhhHhh------cHHHHHHHHHHHHHhc----CCCCCcEEEEEEeCCeE
Q 028291 153 VYFFLIDVSTDAVQT------GATAAACSAIMQVISD----LPINIFVVGLLKLKIWW 200 (211)
Q Consensus 153 ~yvFvIDvS~~a~~~------g~l~~v~~sL~~~l~~----lp~~~~~Vg~Itfd~~i 200 (211)
..+|+||+|..-.+. .-|+.+++.+...++. .+.+ +||+|.|++.=
T Consensus 37 ~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D--~vGlVlfgt~~ 92 (609)
T 1jey_A 37 SLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRD--LLAVVFYGTEK 92 (609)
T ss_dssp EEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCC--EEEEEEESCSS
T ss_pred EEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCC--eEEEEEEccCC
Confidence 589999999743332 2588899988888874 5554 99999999753
No 38
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=81.71 E-value=2.6 Score=26.07 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=22.7
Q ss_pred CceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
....|..|++- -..++...+.++|..||.
T Consensus 4 ~~~~CP~C~~~---~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 4 KQKVCPACESA---ELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp SCCSCTTTSCC---CEEEETTTTEEEESSSCC
T ss_pred ccEeCcCCCCc---ceEEcCCCCeEECcccCC
Confidence 35689999982 245677777899999998
No 39
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=79.13 E-value=0.94 Score=30.83 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=19.4
Q ss_pred CCceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
+-++||. |+++ .-.+.+.+.-.|+ ||+
T Consensus 2 Y~vv~C~-C~~~----~~~~~~~kT~~C~-CG~ 28 (71)
T 1gh9_A 2 YIIFRCD-CGRA----LYSREGAKTRKCV-CGR 28 (71)
T ss_dssp EEEEEET-TSCC----EEEETTCSEEEET-TTE
T ss_pred eEEEECC-CCCE----EEEcCCCcEEECC-CCC
Confidence 3479999 9998 2234556666798 998
No 40
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=78.08 E-value=3.2 Score=31.37 Aligned_cols=33 Identities=12% Similarity=-0.007 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCCCC--cEEEEEEeCCeEEE
Q 028291 170 TAAACSAIMQVISDLPINI--FVVGLLKLKIWWMC 202 (211)
Q Consensus 170 l~~v~~sL~~~l~~lp~~~--~~Vg~Itfd~~i~~ 202 (211)
.+.++++|+..+..-|... ++|-+++||..|++
T Consensus 112 Ae~~kDAi~Dyi~t~P~PT~~~~VtvcsFdd~V~L 146 (147)
T 1b3t_A 112 AEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVDL 146 (147)
T ss_dssp HHHHHHHHHHHHHTSCTTGGGEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCcceEEEEEeCCCCccC
Confidence 4679999999999887765 89999999998764
No 41
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=74.06 E-value=5.9 Score=32.28 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=29.8
Q ss_pred CcEEEEEEEcchhhHhhcHHHHHHHHHHHHH---hcCCCCCcEEEEEEeCCe
Q 028291 151 PPVYFFLIDVSTDAVQTGATAAACSAIMQVI---SDLPINIFVVGLLKLKIW 199 (211)
Q Consensus 151 pp~yvFvIDvS~~a~~~g~l~~v~~sL~~~l---~~lp~~~~~Vg~Itfd~~ 199 (211)
|--.+|++|+|. +++ +.++.+++.+..+. +.+..+ .++||..|-..
T Consensus 3 pvDl~fl~D~S~-SM~-~di~~lk~~~~~l~~~l~~~~~~-~r~Gfg~f~Dk 51 (212)
T 2iue_A 3 SVDLYFLMGLSG-SAQ-GHLSNVQTLGSDLLKALNEISRS-GRIGFGSIVNM 51 (212)
T ss_dssp CEEEEEEEECCG-GGT-TTHHHHHHHHHHHHHHHHHHCSC-EEEEEEEESSS
T ss_pred ceEEEEEEeCCC-cch-hHHHHHHHHHHHHHHHHHhhCcC-ceEEEEEEEcC
Confidence 445899999986 333 23555555555444 445556 79999988644
No 42
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=73.49 E-value=0.92 Score=30.43 Aligned_cols=32 Identities=31% Similarity=0.677 Sum_probs=28.7
Q ss_pred CCceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
..+..|.+|++--.|..+-...|. ..||.||.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl 38 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 38 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTE-EECHHHHH
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHH
Confidence 457999999999999999888887 99999987
No 43
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.63 E-value=2.1 Score=29.53 Aligned_cols=30 Identities=13% Similarity=0.346 Sum_probs=21.6
Q ss_pred eecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 89 VRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 89 ~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
..|..|.--+.-.|.+...+..|.|.+|..
T Consensus 43 ~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k 72 (76)
T 2csz_A 43 NTCRGCNHLVCRDCRIQESNGTWRCKVCSG 72 (76)
T ss_dssp SEETTTTEECCTTSEEECSTTCEEEHHHHS
T ss_pred CcCcccChhhcccccccCCCCCEEEeeCch
Confidence 556666666666666666557899999965
No 44
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=68.42 E-value=0.89 Score=27.90 Aligned_cols=30 Identities=30% Similarity=0.639 Sum_probs=24.7
Q ss_pred ceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 88 p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
|..|.+|++--.|..+-..+|. ..||.||.
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl 30 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGL 30 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSC-EECHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCC-cccHHHHH
Confidence 4579999999888888777776 88999986
No 45
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=66.19 E-value=4.6 Score=28.13 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=21.3
Q ss_pred CceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
.--.|..|++- ..+......|.|.-|+.
T Consensus 26 ~~y~Cp~CG~~----~v~r~atGiW~C~~Cg~ 53 (83)
T 1vq8_Z 26 EDHACPNCGED----RVDRQGTGIWQCSYCDY 53 (83)
T ss_dssp SCEECSSSCCE----EEEEEETTEEEETTTCC
T ss_pred ccCcCCCCCCc----ceeccCCCeEECCCCCC
Confidence 34689999984 23455666899999999
No 46
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=61.72 E-value=1.7 Score=35.18 Aligned_cols=32 Identities=28% Similarity=0.639 Sum_probs=20.8
Q ss_pred CCCceecCCCCe-EEccceEEEeCCceEEEecCCCC
Q 028291 85 ESGLVRCCCCRG-YRNPFMEFVDNGKSFVCNFCGLD 119 (211)
Q Consensus 85 ~~~p~RC~~C~a-YiNp~~~~~~~g~~w~C~~C~~~ 119 (211)
.-...+|.+|++ |+...-+ ....++|++|+-.
T Consensus 131 ~L~l~~C~~Cgg~fv~~~~~---~~~~f~Cp~C~~p 163 (192)
T 2avu_E 131 LLQLSSCNCCGGNFITHAHQ---PVGSFACSLCQPP 163 (192)
T ss_dssp SEEEEECTTTCCEEEEESSC---CSSCCCCTTC---
T ss_pred ceeeCcCCCCCCCeeCccCC---CCCCCcCCCCCCc
Confidence 345799999997 4433332 4567999999973
No 47
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=61.68 E-value=2 Score=33.35 Aligned_cols=31 Identities=16% Similarity=0.399 Sum_probs=22.5
Q ss_pred ceecCCCCeEEccceEE-EeCCceEEEecCCC
Q 028291 88 LVRCCCCRGYRNPFMEF-VDNGKSFVCNFCGL 118 (211)
Q Consensus 88 p~RC~~C~aYiNp~~~~-~~~g~~w~C~~C~~ 118 (211)
-..|..|+-.+.--|.. ......|.|.+|..
T Consensus 85 g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 85 RRQCLECSLFVCKSCSHAHPEEQGWLCDPCHL 116 (153)
T ss_dssp CEECTTTCCEECGGGEECCSSSSSCEEHHHHH
T ss_pred CCcCCCCCchhhcccccccCCCCcEeeHHHHH
Confidence 46777777777766663 33467899999987
No 48
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=61.04 E-value=1.3 Score=27.56 Aligned_cols=30 Identities=23% Similarity=0.587 Sum_probs=15.8
Q ss_pred eecCCCCeEEccc----eEEEeCCceEEEecCCC
Q 028291 89 VRCCCCRGYRNPF----MEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 89 ~RC~~C~aYiNp~----~~~~~~g~~w~C~~C~~ 118 (211)
-+|..|+-.-.|- ..|..--..|+|+.||.
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred EECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 4677777444321 11222223488888876
No 49
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=60.42 E-value=16 Score=33.39 Aligned_cols=49 Identities=14% Similarity=0.194 Sum_probs=32.6
Q ss_pred CCCcEEEEEEEcchhhHh--hcHHHHHHHHHHHHHhcCCCCCcEEEEEEeCCe
Q 028291 149 VMPPVYFFLIDVSTDAVQ--TGATAAACSAIMQVISDLPINIFVVGLLKLKIW 199 (211)
Q Consensus 149 ~~pp~yvFvIDvS~~a~~--~g~l~~v~~sL~~~l~~lp~~~~~Vg~Itfd~~ 199 (211)
..|--.+|++|+|.. ++ -.-++.+...|...|..+..+ .++||..|-..
T Consensus 109 ~ypvDLy~LmDlS~S-M~ddl~~lk~lg~~L~~~l~~~t~~-~riGfgsFvDk 159 (472)
T 3t3p_B 109 DYPVDIYYLMDLSYS-MKDDLWSIQNLGTKLATQMRKLTSN-LRIGFGAFVDK 159 (472)
T ss_dssp SCCEEEEEEEECSGG-GHHHHHHTTTHHHHHHHHHTTTCSC-EEEEEEEECCC
T ss_pred CCCceEEEEEccCcc-hHHHHHHHHHHHHHHHHHHHhcCcC-cEEEEEEeecc
Confidence 457789999999963 32 112344455555666666666 79999999653
No 50
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=60.16 E-value=8 Score=36.95 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=32.2
Q ss_pred CCCcEEEEEEEcchhhHhhcHHHH---HHHHHHHHHhcCCCCCcEEEEEEeCCeE
Q 028291 149 VMPPVYFFLIDVSTDAVQTGATAA---ACSAIMQVISDLPINIFVVGLLKLKIWW 200 (211)
Q Consensus 149 ~~pp~yvFvIDvS~~a~~~g~l~~---v~~sL~~~l~~lp~~~~~Vg~Itfd~~i 200 (211)
..|--.+|++|+|.. ++ ..++. +...|...|..+..+ .++||..|....
T Consensus 109 ~~pvDly~LmD~S~S-M~-ddi~~lk~l~~~l~~~l~~~t~~-~r~Gfgsf~Dk~ 160 (690)
T 3fcs_B 109 DYPVDIYYLMDLSYS-MK-DDLWSIQNLGTKLATQMRKLTSN-LRIGFGAFVDKP 160 (690)
T ss_dssp TCCEEEEEEEECSGG-GH-HHHHHTTTTTHHHHHHHHHHCSC-EEEEEEEECCCS
T ss_pred CCCccEEEEecCCcc-hH-HHHHHHHHHHHHHHHHHHhhCcC-ceEEeEEeeccc
Confidence 346779999999963 32 12333 344455555556666 799999997644
No 51
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=59.93 E-value=3.6 Score=22.05 Aligned_cols=26 Identities=31% Similarity=0.800 Sum_probs=20.9
Q ss_pred ecCCCCeEEccceEEEeCCceEEEecC
Q 028291 90 RCCCCRGYRNPFMEFVDNGKSFVCNFC 116 (211)
Q Consensus 90 RC~~C~aYiNp~~~~~~~g~~w~C~~C 116 (211)
.|-.|--+=|-||. +.-|+.|-|.-|
T Consensus 2 ~cvscv~fgngfcg-dncgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCG-DNCGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEE-CSSSCEEECSCC
T ss_pred cceEeEeecCcccc-CCcCCcccccCC
Confidence 37778888899996 566888999866
No 52
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=57.78 E-value=4.8 Score=30.47 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=22.3
Q ss_pred eecCCCCeEEccceEEEeC----CceEEEecCCC
Q 028291 89 VRCCCCRGYRNPFMEFVDN----GKSFVCNFCGL 118 (211)
Q Consensus 89 ~RC~~C~aYiNp~~~~~~~----g~~w~C~~C~~ 118 (211)
..|..|+-.+..-|..... ...|.|++|..
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 106 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHH
Confidence 6777777777777766442 35899999988
No 53
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=57.02 E-value=1.7 Score=30.73 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=20.4
Q ss_pred CCceecCCCCeEEccc-----------eEEEeCCceEEEecCCCC
Q 028291 86 SGLVRCCCCRGYRNPF-----------MEFVDNGKSFVCNFCGLD 119 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~-----------~~~~~~g~~w~C~~C~~~ 119 (211)
...-+|..|+=.-.+- ..|..--..|+|++|+..
T Consensus 33 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 33 YLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred CceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 3467888888554432 222233345888888874
No 54
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=56.48 E-value=6.7 Score=35.90 Aligned_cols=53 Identities=11% Similarity=0.034 Sum_probs=30.0
Q ss_pred CCCCcEEEEEEEcchhhHhhcH----HHHHHHHHHHHHhcCCCCCcEEEEEEeCCeEEE
Q 028291 148 NVMPPVYFFLIDVSTDAVQTGA----TAAACSAIMQVISDLPINIFVVGLLKLKIWWMC 202 (211)
Q Consensus 148 ~~~pp~yvFvIDvS~~a~~~g~----l~~v~~sL~~~l~~lp~~~~~Vg~Itfd~~i~~ 202 (211)
+..+..++|+||+|.. +..+. +.....++...+..+..++ +||+|+|+..+..
T Consensus 365 ~~~~~~v~lvvD~SgS-M~~~~~~~~l~~~~~Aa~l~~~~~~~~d-~vglv~Fs~~~~~ 421 (538)
T 1yvr_A 365 EPTGKRFLLAIDVSAS-MNQRVLGSILNASVVAAAMCMLVARTEK-DSHMVAFSDEMLP 421 (538)
T ss_dssp CCCCCCEEEEEECSGG-GGSBSTTSSCBHHHHHHHHHHHHHHHCS-SEEEEEESSSEEC
T ss_pred CCCCceEEEEEECccc-cCCCCCCCcHHHHHHHHHHHHHHhccCC-ceEEEEECCCceE
Confidence 3567789999999874 33211 2221111222222233443 8999999986653
No 55
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.25 E-value=6 Score=24.77 Aligned_cols=25 Identities=28% Similarity=0.713 Sum_probs=18.3
Q ss_pred ceecCCCCe--EEccceEEEeCCceEEEecCCC
Q 028291 88 LVRCCCCRG--YRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 88 p~RC~~C~a--YiNp~~~~~~~g~~w~C~~C~~ 118 (211)
---|.+|++ ++- ....+|.|.-||.
T Consensus 19 ~k~CP~CG~~~fm~------~~~~R~~C~kCG~ 45 (50)
T 3j20_Y 19 NKFCPRCGPGVFMA------DHGDRWACGKCGY 45 (50)
T ss_dssp SEECSSSCSSCEEE------ECSSEEECSSSCC
T ss_pred cccCCCCCCceEEe------cCCCeEECCCCCC
Confidence 467999998 433 2356799999986
No 56
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=56.18 E-value=3.3 Score=33.43 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=19.1
Q ss_pred CceecCCCCeEEccceEEEeCCceEEEecCCCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDG 120 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~~ 120 (211)
..-+|..||-... +...|.|++|+...
T Consensus 170 ~~~~C~~CG~i~~-------g~~p~~CP~C~~~k 196 (202)
T 1yuz_A 170 KFHLCPICGYIHK-------GEDFEKCPICFRPK 196 (202)
T ss_dssp CEEECSSSCCEEE-------SSCCSBCTTTCCBG
T ss_pred cEEEECCCCCEEc-------CcCCCCCCCCCCCh
Confidence 4679999985533 23459999999843
No 57
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=56.18 E-value=21 Score=32.77 Aligned_cols=49 Identities=12% Similarity=0.198 Sum_probs=32.7
Q ss_pred CCCcEEEEEEEcchhhHh--hcHHHHHHHHHHHHHhcCCCCCcEEEEEEeCCe
Q 028291 149 VMPPVYFFLIDVSTDAVQ--TGATAAACSAIMQVISDLPINIFVVGLLKLKIW 199 (211)
Q Consensus 149 ~~pp~yvFvIDvS~~a~~--~g~l~~v~~sL~~~l~~lp~~~~~Vg~Itfd~~ 199 (211)
..|--.+|++|+|.. ++ -.-++.+...|...|..+..+ .++||..|-..
T Consensus 130 ~yPVDLyyLmDlS~S-M~ddl~~lk~lg~~L~~~l~~~t~~-~RiGfGsFvDK 180 (503)
T 3v4v_B 130 GYPVDLYYLMDLSYS-MKDDLERVRQLGHALLVRLQEVTHS-VRIGFGSFVDK 180 (503)
T ss_dssp SCCEEEEEEEECSGG-GHHHHHHHHHSSHHHHHHHTTTCSC-EEEEEEEECCC
T ss_pred CCceeEEEEEecCcc-hhhHHHHHHHHHHHHHHHHHhhCcC-cEEeeeeeccc
Confidence 457789999999963 33 112344445555666666666 79999999543
No 58
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=53.84 E-value=36 Score=30.88 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=32.8
Q ss_pred CCCcEEEEEEEcchhhHh--hcHHHHHHHHHHHHHhcCCCCCcEEEEEEeCCe
Q 028291 149 VMPPVYFFLIDVSTDAVQ--TGATAAACSAIMQVISDLPINIFVVGLLKLKIW 199 (211)
Q Consensus 149 ~~pp~yvFvIDvS~~a~~--~g~l~~v~~sL~~~l~~lp~~~~~Vg~Itfd~~ 199 (211)
..|--..|++|+|.. ++ -.-++.+...|...|..+-.+ .++||..|-..
T Consensus 120 ~yPVDLyyLmDlS~S-M~ddl~~lk~lg~~L~~~l~~~t~~-~riGfGsFvDK 170 (454)
T 3vi3_B 120 DYPIDLYYLMDLSYS-MKDDLENVKSLGTDLMNEMRRITSD-FRIGFGSFVEK 170 (454)
T ss_dssp CCCEEEEEEEECSGG-GHHHHHHHTTHHHHHHHHHTTTCSS-EEEEEEEECCC
T ss_pred CCceeEEEEecCCcc-hhhHHHHHHHHHHHHHHHHHhcCCC-eEEEEEEEecc
Confidence 356779999999963 32 122444555566666666666 79999999653
No 59
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=52.18 E-value=2.4 Score=31.39 Aligned_cols=32 Identities=28% Similarity=0.639 Sum_probs=25.9
Q ss_pred CCceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
..+..|.+|++---|..+-+..| .+.||-|+.
T Consensus 3 ~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl 34 (115)
T 4hc9_A 3 HMGRECVNCGATSTPLWRRDGTG-HYLCNACGL 34 (115)
T ss_dssp ---CCCTTTCCSCCSSCEECTTS-CEECHHHHH
T ss_pred CCCCCCCCCCCccCCcceECCCC-CCcCcchhh
Confidence 34678999999999999877777 599999996
No 60
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=51.17 E-value=8.1 Score=36.91 Aligned_cols=50 Identities=10% Similarity=0.175 Sum_probs=33.3
Q ss_pred CCCcEEEEEEEcchhhH-hhcHHHHHHHHHHHHHhcCCCCCcEEEEEEeCCe
Q 028291 149 VMPPVYFFLIDVSTDAV-QTGATAAACSAIMQVISDLPINIFVVGLLKLKIW 199 (211)
Q Consensus 149 ~~pp~yvFvIDvS~~a~-~~g~l~~v~~sL~~~l~~lp~~~~~Vg~Itfd~~ 199 (211)
..|--.+|++|+|..-- +-.-++.+...|...|..+..+ .++||..|-..
T Consensus 102 ~ypvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~-~r~GfgsFvDk 152 (687)
T 3k6s_B 102 GYPIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITES-GRIGFGSFVDK 152 (687)
T ss_dssp CCCCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCS-CEEEEEEECCC
T ss_pred CCceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcC-cEEeeEEeecc
Confidence 35678999999996321 1112334445566666777777 79999999753
No 61
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=50.99 E-value=1.5 Score=27.33 Aligned_cols=31 Identities=29% Similarity=0.725 Sum_probs=25.7
Q ss_pred CceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
....|.+|++--.|..+-...|. ..||.||.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl 33 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGL 33 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHH
Confidence 35679999999888888777776 88999986
No 62
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=50.51 E-value=2.3 Score=27.06 Aligned_cols=9 Identities=44% Similarity=1.368 Sum_probs=5.2
Q ss_pred eEEEecCCC
Q 028291 110 SFVCNFCGL 118 (211)
Q Consensus 110 ~w~C~~C~~ 118 (211)
.|+|++|+.
T Consensus 35 dw~CP~Cg~ 43 (52)
T 1yk4_A 35 DWVCPLCGA 43 (52)
T ss_dssp TCBCTTTCC
T ss_pred CCcCCCCCC
Confidence 366666655
No 63
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=47.93 E-value=2.9 Score=28.20 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=17.3
Q ss_pred ceecCCCCeEEccc-----------eEEEeCCceEEEecCCCC
Q 028291 88 LVRCCCCRGYRNPF-----------MEFVDNGKSFVCNFCGLD 119 (211)
Q Consensus 88 p~RC~~C~aYiNp~-----------~~~~~~g~~w~C~~C~~~ 119 (211)
.-+|..|+=.-.|- ..|..--..|+|++|+..
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 46777777444421 122222335888888873
No 64
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=46.40 E-value=2.4 Score=26.96 Aligned_cols=9 Identities=33% Similarity=1.176 Sum_probs=4.9
Q ss_pred eEEEecCCC
Q 028291 110 SFVCNFCGL 118 (211)
Q Consensus 110 ~w~C~~C~~ 118 (211)
.|+|++|+.
T Consensus 36 dw~CP~Cg~ 44 (52)
T 1e8j_A 36 DWACPVCGA 44 (52)
T ss_dssp TCCCSSSCC
T ss_pred CCcCCCCCC
Confidence 355555554
No 65
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=45.88 E-value=3.2 Score=26.61 Aligned_cols=9 Identities=44% Similarity=1.479 Sum_probs=5.6
Q ss_pred eEEEecCCC
Q 028291 110 SFVCNFCGL 118 (211)
Q Consensus 110 ~w~C~~C~~ 118 (211)
.|+|+.|+.
T Consensus 36 dw~CP~Cg~ 44 (54)
T 4rxn_A 36 DWVCPLCGV 44 (54)
T ss_dssp TCBCTTTCC
T ss_pred CCcCcCCCC
Confidence 466666665
No 66
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=45.61 E-value=15 Score=33.63 Aligned_cols=53 Identities=9% Similarity=-0.011 Sum_probs=30.0
Q ss_pred CCCCcEEEEEEEcchhhHhh-cH-----HHHHHHHHHHHHhcCCCCCcEEEEEEeCCeEEE
Q 028291 148 NVMPPVYFFLIDVSTDAVQT-GA-----TAAACSAIMQVISDLPINIFVVGLLKLKIWWMC 202 (211)
Q Consensus 148 ~~~pp~yvFvIDvS~~a~~~-g~-----l~~v~~sL~~~l~~lp~~~~~Vg~Itfd~~i~~ 202 (211)
++..-.++++||+|.. +.. +. +..+..+..-++-.+..++ +||+|+|+..+..
T Consensus 359 ~~~~~~~lv~vDvSgS-M~~~~~~~~~k~~~~e~Aa~la~~~~r~~d-~v~lv~Fs~~~~~ 417 (535)
T 2nvo_A 359 QPANTRHLLALDVSGS-MTCGDVAGVPGLTPNMAAAAMSLIALRTEP-DALTMGFAEQFRP 417 (535)
T ss_dssp CCCCSEEEEEECCSGG-GGSCCGGGCTTCCHHHHHHHHHHHHHHHSS-EEEEEEEBSSEEE
T ss_pred CCCCceEEEEEECCcc-ccCCCCCCCCcccHHHHHHHHHHHHcCcCC-ceEEEEECCcceE
Confidence 4566789999999864 332 21 1111111111222233453 9999999987754
No 67
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=44.86 E-value=12 Score=27.53 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=22.1
Q ss_pred eecCCCCeEEccceE----EEeCC---ceEEEecCCC
Q 028291 89 VRCCCCRGYRNPFME----FVDNG---KSFVCNFCGL 118 (211)
Q Consensus 89 ~RC~~C~aYiNp~~~----~~~~g---~~w~C~~C~~ 118 (211)
.-|.+|++++=|-.+ +..++ -.+.|..||.
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~ 102 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGY 102 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCC
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCC
Confidence 479999999987643 33332 3678999998
No 68
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=42.06 E-value=3.5 Score=26.48 Aligned_cols=9 Identities=44% Similarity=1.239 Sum_probs=5.4
Q ss_pred eEEEecCCC
Q 028291 110 SFVCNFCGL 118 (211)
Q Consensus 110 ~w~C~~C~~ 118 (211)
.|+|++|+.
T Consensus 36 dw~CP~Cga 44 (55)
T 2v3b_B 36 DWVCPDCGV 44 (55)
T ss_dssp TCCCTTTCC
T ss_pred CCcCCCCCC
Confidence 366666665
No 69
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=41.36 E-value=3.4 Score=28.75 Aligned_cols=10 Identities=30% Similarity=0.860 Sum_probs=6.7
Q ss_pred eEEEecCCCC
Q 028291 110 SFVCNFCGLD 119 (211)
Q Consensus 110 ~w~C~~C~~~ 119 (211)
.|+|++|+..
T Consensus 60 dW~CPvCga~ 69 (81)
T 2kn9_A 60 DWSCPDCGAA 69 (81)
T ss_dssp TCCCTTTCCC
T ss_pred CCcCCCCCCC
Confidence 4777777763
No 70
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=39.43 E-value=2.6 Score=27.95 Aligned_cols=32 Identities=31% Similarity=0.600 Sum_probs=27.0
Q ss_pred CCceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
.....|.+|++---|..+-..+|. ..||.||.
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl 36 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGD-PVCNACGL 36 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHH
T ss_pred CCCCcCCCcCCCCCCccCCCCCCC-chhhHHHH
Confidence 446789999999888888777787 88999997
No 71
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=37.19 E-value=18 Score=26.08 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=16.8
Q ss_pred CceecCCCCeEEccceEEEeCCceE-----EEecCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w-----~C~~C~~ 118 (211)
...+|..|+-.|-.-..+...++.| +|..|+.
T Consensus 4 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~ 40 (122)
T 1m3v_A 4 SWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQA 40 (122)
T ss_dssp CCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCC
T ss_pred CCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCC
Confidence 3456666666555432233445555 5656655
No 72
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=36.32 E-value=22 Score=25.89 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=25.3
Q ss_pred CCceecCCCCeEEccceEEEeCCceE-----EEecCCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGLD 119 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w-----~C~~C~~~ 119 (211)
....+|..|+-.|-.-..+...++.| +|..|+..
T Consensus 59 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~ 97 (123)
T 2l4z_A 59 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQ 97 (123)
T ss_dssp SSCSBBSSSSSBCCSSSEEEETTEEEETTTSBCTTTCCB
T ss_pred ccCCcCcCCCCCcCCcEEEEeCCcEEcccccCcCcCCCc
Confidence 44689999999887654455677777 78888873
No 73
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=36.05 E-value=16 Score=27.02 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=22.0
Q ss_pred eecCCCCeEEccceE----EEeCC---ceEEEecCCC
Q 028291 89 VRCCCCRGYRNPFME----FVDNG---KSFVCNFCGL 118 (211)
Q Consensus 89 ~RC~~C~aYiNp~~~----~~~~g---~~w~C~~C~~ 118 (211)
.-|.+|++++=|-.+ +..++ -.++|..||+
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~ 97 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGH 97 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCC
Confidence 479999999987633 33332 3668999998
No 74
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.68 E-value=6.4 Score=28.69 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=19.7
Q ss_pred CceecCCCCeEEccceEEEeCCceEEEecCCCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDG 120 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~~ 120 (211)
.+.+|.+||-- | .+..++.-+|+.|+..+
T Consensus 66 ~p~~C~~CG~~---F--~~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 66 KPAQCRKCGFV---F--KAEINIPSRCPKCKSEW 94 (105)
T ss_dssp CCCBBTTTCCB---C--CCCSSCCSSCSSSCCCC
T ss_pred ECcChhhCcCe---e--cccCCCCCCCcCCCCCc
Confidence 47899999865 3 13345557899998744
No 75
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=35.23 E-value=16 Score=23.37 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=21.5
Q ss_pred CceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
...+|..|++- + ..++.....++|.-||.
T Consensus 10 ~~~~Cp~C~~~--~-lv~D~~~ge~vC~~CGl 38 (58)
T 1dl6_A 10 PRVTCPNHPDA--I-LVEDYRAGDMICPECGL 38 (58)
T ss_dssp SCCSBTTBSSS--C-CEECSSSCCEECTTTCC
T ss_pred ccccCcCCCCC--c-eeEeCCCCeEEeCCCCC
Confidence 35689999873 2 34566666799999998
No 76
>2x5r_A Hypothetical protein ORF126; unknown function, viral protein; 2.00A {Pyrobaculum spherical virus}
Probab=34.66 E-value=21 Score=25.41 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=24.4
Q ss_pred CCceecCCCCeEEccceEE----EeCCceEEEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEF----VDNGKSFVCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~----~~~g~~w~C~~C~~ 118 (211)
..-+||-+|+|..|--..| +++|..|.=..|.+
T Consensus 75 dtkprcvkcgaayngknhfrvvairngtyyldavcdk 111 (127)
T 2x5r_A 75 DTKPRCVKCGAAYNGKNHFRVVAIRNGTYYLDAVCDK 111 (127)
T ss_dssp HHCCBCTTTCCBCCSSSCEEEEEETTTTEEEEEEETT
T ss_pred CCCcceeeecccccCCCcEEEEEEecCcEEeeeeccc
Confidence 4468999999999876665 56777776666654
No 77
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=34.45 E-value=12 Score=27.30 Aligned_cols=29 Identities=24% Similarity=0.493 Sum_probs=20.8
Q ss_pred CceecCCCCeEEccceEEEeCCceE-EEecCCCCCc
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSF-VCNFCGLDGR 121 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w-~C~~C~~~~~ 121 (211)
.-.||.+|+...-. ..... .|+-||....
T Consensus 72 ~~~~C~~CG~~~e~------~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 72 VELECKDCSHVFKP------NALDYGVCEKCHSKNV 101 (119)
T ss_dssp CEEECSSSSCEECS------CCSTTCCCSSSSSCCC
T ss_pred ceEEcCCCCCEEeC------CCCCCCcCccccCCCc
Confidence 45899999987544 33457 8999998543
No 78
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=33.58 E-value=8.6 Score=28.29 Aligned_cols=32 Identities=31% Similarity=0.600 Sum_probs=28.0
Q ss_pred CCceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
.....|.+|++-..|..+-..+| .-.||.||.
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl 88 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANG-DPVCNACGL 88 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTS-CEECHHHHH
T ss_pred cccccCCCcCCCCcceeEECCCC-CCcchHHHH
Confidence 45689999999999998888888 689999997
No 79
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=33.09 E-value=16 Score=22.59 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=23.4
Q ss_pred CCceecCCCCeEEcc---ceEEEeCCceEEEecCCCC
Q 028291 86 SGLVRCCCCRGYRNP---FMEFVDNGKSFVCNFCGLD 119 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp---~~~~~~~g~~w~C~~C~~~ 119 (211)
..+-.|..|+.-..- ...+..+.+.|.|..|+..
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~ 48 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTE 48 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCB
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCc
Confidence 567899999864221 1134556678999999984
No 80
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.41 E-value=2.9 Score=24.43 Aligned_cols=33 Identities=12% Similarity=0.042 Sum_probs=19.0
Q ss_pred CCceecCCCCeEEcc------ceEEEeCCceEEEecCCC
Q 028291 86 SGLVRCCCCRGYRNP------FMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp------~~~~~~~g~~w~C~~C~~ 118 (211)
..+..|..|+--..- .++.-.+.+.|.|.+|+.
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 10 RKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp CCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred CcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence 446778888754332 222223455688888874
No 81
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.06 E-value=16 Score=23.10 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=21.9
Q ss_pred CCceecCCCCeEEccceEEEeCCceEEEecCCCCCcc
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRC 122 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~~~~ 122 (211)
...-.|.+|+|- .+.+.|.|-=||..+.+
T Consensus 12 ~~k~iCpkC~a~--------~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 12 FKKYVCLRCGAT--------NPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSEEECTTTCCE--------ECTTCSSCSSSSSCCCE
T ss_pred hCCccCCCCCCc--------CCCCceecCCCCCcccc
Confidence 456789999997 34557999999986544
No 82
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.70 E-value=16 Score=18.87 Aligned_cols=12 Identities=25% Similarity=0.778 Sum_probs=9.4
Q ss_pred CCceEEEecCCC
Q 028291 107 NGKSFVCNFCGL 118 (211)
Q Consensus 107 ~g~~w~C~~C~~ 118 (211)
+.+.|.|..|+.
T Consensus 4 ~~k~~~C~~C~k 15 (35)
T 2elx_A 4 GSSGYVCALCLK 15 (35)
T ss_dssp CCCSEECSSSCC
T ss_pred CCCCeECCCCcc
Confidence 345699999998
No 83
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.35 E-value=15 Score=17.83 Aligned_cols=10 Identities=40% Similarity=1.075 Sum_probs=7.8
Q ss_pred ceEEEecCCC
Q 028291 109 KSFVCNFCGL 118 (211)
Q Consensus 109 ~~w~C~~C~~ 118 (211)
+.|.|..|+.
T Consensus 2 k~~~C~~C~k 11 (27)
T 2kvh_A 2 KPFSCSLCPQ 11 (27)
T ss_dssp CCEECSSSSC
T ss_pred cCccCCCcCh
Confidence 3588999987
No 84
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=31.10 E-value=29 Score=21.99 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=20.3
Q ss_pred CCceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
..|..|..|+.+| ..+.++|..|+.
T Consensus 20 ~~pt~C~~C~~~i--------~kqg~kC~~C~~ 44 (59)
T 1rfh_A 20 GGPGWCDLCGREV--------LRQALRCANCKF 44 (59)
T ss_dssp SCCEECTTTCSEE--------CSCCEECTTTSC
T ss_pred CCCeEchhcchhh--------hhCccEeCCCCC
Confidence 5689999999999 133489999987
No 85
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=30.99 E-value=33 Score=22.46 Aligned_cols=32 Identities=28% Similarity=0.530 Sum_probs=20.5
Q ss_pred CceecCCCCeEEccceEEEeCCceE-----EEecCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w-----~C~~C~~ 118 (211)
...+|..|+-.|-+--.+...++.| +|..|+.
T Consensus 6 ~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~ 42 (81)
T 1a7i_A 6 GGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRK 42 (81)
T ss_dssp --CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCC
T ss_pred CCCcCcCcCccccCceeEEeCCcccccccCccCCCCC
Confidence 3578999988875333445566665 7888876
No 86
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.38 E-value=35 Score=21.53 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=21.8
Q ss_pred CCceecCCCCeEEccceEEEeCCceE-----EEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w-----~C~~C~~ 118 (211)
....+|..|+..|-+-. +...++.| +|..|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~ 39 (70)
T 2d8z_A 3 SGSSGCVQCKKPITTGG-VTYREQPWHKECFVCTACRK 39 (70)
T ss_dssp CCCCBCSSSCCBCCSSE-EESSSSEEETTTSBCSSSCC
T ss_pred CCCCCCcccCCeeccce-EEECccccCCCCCccCCCCC
Confidence 44578999998876532 45556666 5777776
No 87
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=29.57 E-value=9.5 Score=28.17 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=22.8
Q ss_pred CceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
.+.-|..|+..|-|--.-...+..|.|.-|+.
T Consensus 3 ~~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y 34 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDKENNRLLFECRTCSY 34 (122)
T ss_dssp CCCBCSSSCCBCEEEEETTTTEEEEECSSSSC
T ss_pred CCCcccccCccCcccccCcCCCCEEECCcCCC
Confidence 35679999998765542113456899999998
No 88
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=29.50 E-value=20 Score=18.65 Aligned_cols=12 Identities=33% Similarity=0.850 Sum_probs=9.4
Q ss_pred CCceEEEecCCC
Q 028291 107 NGKSFVCNFCGL 118 (211)
Q Consensus 107 ~g~~w~C~~C~~ 118 (211)
+.+.|.|..|+.
T Consensus 4 ~~k~~~C~~C~k 15 (35)
T 1srk_A 4 GKRPFVCRICLS 15 (35)
T ss_dssp CCSCEECSSSCC
T ss_pred CCcCeeCCCCCc
Confidence 345699999998
No 89
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=29.39 E-value=14 Score=27.81 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=8.7
Q ss_pred CceecCCCCeEE
Q 028291 87 GLVRCCCCRGYR 98 (211)
Q Consensus 87 ~p~RC~~C~aYi 98 (211)
...||.+|+...
T Consensus 69 ~~~~C~~CG~~~ 80 (139)
T 3a43_A 69 AVFKCRNCNYEW 80 (139)
T ss_dssp CEEEETTTCCEE
T ss_pred CcEECCCCCCEE
Confidence 458899997653
No 90
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.32 E-value=66 Score=21.42 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=22.5
Q ss_pred CCceecCCCCeEEccceEEEeCCceE-----EEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w-----~C~~C~~ 118 (211)
....+|..|+-.|-... +...++.| +|..|+.
T Consensus 23 ~~~~~C~~C~~~I~~~~-~~a~~~~~H~~CF~C~~C~~ 59 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAV-VKARDKYRHPECFVCADCNL 59 (89)
T ss_dssp CSCCBCTTTCCBCCSCC-EESSSCEECTTTCCCSSSCC
T ss_pred CcCCCcccCCCEecccE-EEECCceECccCCEecCCCC
Confidence 45689999999887633 44455555 6888877
No 91
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=29.03 E-value=43 Score=22.30 Aligned_cols=29 Identities=31% Similarity=0.590 Sum_probs=22.1
Q ss_pred CCceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
-++.+|..|++=+ .++...+.-+|..|+.
T Consensus 6 L~iL~CP~ck~~L----~~~~~~~~LiC~~cg~ 34 (70)
T 2js4_A 6 LDILVCPVCKGRL----EFQRAQAELVCNADRL 34 (70)
T ss_dssp CCCCBCTTTCCBE----EEETTTTEEEETTTTE
T ss_pred hhheECCCCCCcC----EEeCCCCEEEcCCCCc
Confidence 3579999999943 2455566799999998
No 92
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.21 E-value=34 Score=21.78 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=21.1
Q ss_pred CCceecCCCCeEEccc---eEEEeCCceE-----EEecCCC
Q 028291 86 SGLVRCCCCRGYRNPF---MEFVDNGKSF-----VCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~---~~~~~~g~~w-----~C~~C~~ 118 (211)
....+|..|+-.|-++ ..+...++.| +|..|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~ 43 (72)
T 1x4l_A 3 SGSSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSL 43 (72)
T ss_dssp SCSCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCC
T ss_pred CCCCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCC
Confidence 3457899999888751 1123345555 7888876
No 93
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=28.12 E-value=30 Score=22.37 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=4.9
Q ss_pred ecCCCCeEEc
Q 028291 90 RCCCCRGYRN 99 (211)
Q Consensus 90 RC~~C~aYiN 99 (211)
+|..|+--|-
T Consensus 2 ~C~~C~~~I~ 11 (76)
T 1iml_A 2 KCPKCDKEVY 11 (76)
T ss_dssp BCTTTSSBCC
T ss_pred cCCCCCCEEE
Confidence 4555555443
No 94
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.06 E-value=34 Score=21.72 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=20.0
Q ss_pred CCceecCCCCeEEccc-eEEEeCCceE-----EEecCCC
Q 028291 86 SGLVRCCCCRGYRNPF-MEFVDNGKSF-----VCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~-~~~~~~g~~w-----~C~~C~~ 118 (211)
....+|..|+--|-+- ..+...++.| +|..|+.
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~ 41 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRA 41 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCC
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCC
Confidence 4457888888766642 2233445454 6777776
No 95
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=27.53 E-value=25 Score=23.31 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=20.4
Q ss_pred CCceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
..|..|..|+.+| ..+.++|..|+.
T Consensus 33 ~~pt~C~~C~~~l--------~~qG~kC~~C~~ 57 (72)
T 2fnf_X 33 GGPGWCDLCGREV--------LRQALRCANCKF 57 (72)
T ss_dssp SSCCBCTTTSSBC--------SSCCEECTTSSC
T ss_pred CCCcchhhhhHHH--------HhCcCccCCCCC
Confidence 5689999999998 233489999987
No 96
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=27.41 E-value=45 Score=22.02 Aligned_cols=29 Identities=17% Similarity=0.404 Sum_probs=22.0
Q ss_pred CCceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
-++.+|..|++ |. .++..++.-+|..|+.
T Consensus 8 LeiL~CP~ck~---~L-~~~~~~g~LvC~~c~~ 36 (67)
T 2jny_A 8 LEVLACPKDKG---PL-RYLESEQLLVNERLNL 36 (67)
T ss_dssp TCCCBCTTTCC---BC-EEETTTTEEEETTTTE
T ss_pred HHHhCCCCCCC---cC-eEeCCCCEEEcCCCCc
Confidence 45899999999 32 3455566799999998
No 97
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.84 E-value=33 Score=22.72 Aligned_cols=33 Identities=18% Similarity=0.459 Sum_probs=23.0
Q ss_pred CCceecCCCCeEEccceEEEeCCceE-----EEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w-----~C~~C~~ 118 (211)
....+|..|+-.|-+--.+...++.| +|..|+.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~ 50 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSV 50 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCC
T ss_pred CCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCC
Confidence 45689999998876332344566666 8888876
No 98
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=26.53 E-value=64 Score=20.12 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=20.6
Q ss_pred eecCCCCeEEccc-eEEEeCCceEE-------EecCCC
Q 028291 89 VRCCCCRGYRNPF-MEFVDNGKSFV-------CNFCGL 118 (211)
Q Consensus 89 ~RC~~C~aYiNp~-~~~~~~g~~w~-------C~~C~~ 118 (211)
.+|..|+-.|-+- ..+...|+.|- |..|+.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~ 40 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSK 40 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCC
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCC
Confidence 5788888888863 34455666665 777766
No 99
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.22 E-value=14 Score=17.79 Aligned_cols=10 Identities=40% Similarity=1.125 Sum_probs=7.7
Q ss_pred eEEEecCCCC
Q 028291 110 SFVCNFCGLD 119 (211)
Q Consensus 110 ~w~C~~C~~~ 119 (211)
.|.|..|+..
T Consensus 2 p~~C~~C~k~ 11 (26)
T 2lvu_A 2 PYVCERCGKR 11 (26)
Confidence 4789999873
No 100
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=25.92 E-value=33 Score=23.50 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=17.5
Q ss_pred ceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 88 p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
-+.|..|+.. |. .|.+|+|..|.-
T Consensus 21 ~~~Cd~C~~~--pI-----~G~RykC~~C~d 44 (82)
T 2fc7_A 21 GFKCDNCGIE--PI-----QGVRWHCQDCPP 44 (82)
T ss_dssp SCCCSSSCCS--SE-----ESCEEEESSSCS
T ss_pred cCCCCCCCCC--cc-----eeceEECCcCCC
Confidence 3689999853 32 266899999975
No 101
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=25.65 E-value=21 Score=24.42 Aligned_cols=13 Identities=23% Similarity=0.708 Sum_probs=10.3
Q ss_pred CceEEEecCCCCC
Q 028291 108 GKSFVCNFCGLDG 120 (211)
Q Consensus 108 g~~w~C~~C~~~~ 120 (211)
...|+|.+|...|
T Consensus 15 ~~tWVCpICsfsN 27 (76)
T 2j9u_B 15 VSTWVCPICMVSN 27 (76)
T ss_dssp CEEEECTTTCCEE
T ss_pred ccceECccccccC
Confidence 4579999999843
No 102
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.59 E-value=41 Score=23.75 Aligned_cols=31 Identities=19% Similarity=0.490 Sum_probs=19.5
Q ss_pred ceecCCCCeEEccceEEEeCCceE-----EEecCCC
Q 028291 88 LVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (211)
Q Consensus 88 p~RC~~C~aYiNp~~~~~~~g~~w-----~C~~C~~ 118 (211)
..+|..|+--|-.--.+...++.| +|..|+.
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~ 38 (114)
T 1j2o_A 3 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 38 (114)
T ss_dssp CBCBSSSCSCBCSSEEEECSSSEECTTTCCCSSSCS
T ss_pred CCCCcCCCCeeCCcEEEEECchhHHHhcCcccccCC
Confidence 467888877665432344456666 6777776
No 103
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=25.53 E-value=17 Score=23.94 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=20.4
Q ss_pred CceecCCCCeEEccceEEEeCCceEEEecCCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD 119 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~ 119 (211)
-.-+|.+|++-+..- .+..-+|+.||..
T Consensus 20 v~Y~C~~Cg~~~~l~-----~~~~iRC~~CG~R 47 (63)
T 3h0g_L 20 MIYLCADCGARNTIQ-----AKEVIRCRECGHR 47 (63)
T ss_dssp CCCBCSSSCCBCCCC-----SSSCCCCSSSCCC
T ss_pred eEEECCCCCCeeecC-----CCCceECCCCCcE
Confidence 346899998876633 3556899999984
No 104
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.51 E-value=24 Score=18.49 Aligned_cols=11 Identities=45% Similarity=1.228 Sum_probs=8.8
Q ss_pred CceEEEecCCC
Q 028291 108 GKSFVCNFCGL 118 (211)
Q Consensus 108 g~~w~C~~C~~ 118 (211)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elq_A 7 GKPFKCSLCEY 17 (36)
T ss_dssp CCSEECSSSSC
T ss_pred CCCccCCCCCc
Confidence 45689999987
No 105
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.47 E-value=25 Score=23.38 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCceecCCCCeEEccceEEEeCCceE-----EEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w-----~C~~C~~ 118 (211)
....+|.+|+--|-+--.+...++.| +|..|+.
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~ 50 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEA 50 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCC
T ss_pred CCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCC
Confidence 45689999998875432233445554 7888887
No 106
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.43 E-value=24 Score=18.35 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=8.6
Q ss_pred CceEEEecCCC
Q 028291 108 GKSFVCNFCGL 118 (211)
Q Consensus 108 g~~w~C~~C~~ 118 (211)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elt_A 7 GKPYKCPQCSY 17 (36)
T ss_dssp CCSEECSSSSC
T ss_pred CCCCCCCCCCc
Confidence 45688999987
No 107
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.23 E-value=24 Score=18.49 Aligned_cols=11 Identities=45% Similarity=1.280 Sum_probs=8.7
Q ss_pred CceEEEecCCC
Q 028291 108 GKSFVCNFCGL 118 (211)
Q Consensus 108 g~~w~C~~C~~ 118 (211)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2els_A 7 GKIFTCEYCNK 17 (36)
T ss_dssp CCCEECTTTCC
T ss_pred CCCEECCCCCc
Confidence 45688999987
No 108
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=25.17 E-value=22 Score=17.19 Aligned_cols=9 Identities=33% Similarity=1.221 Sum_probs=7.4
Q ss_pred eEEEecCCC
Q 028291 110 SFVCNFCGL 118 (211)
Q Consensus 110 ~w~C~~C~~ 118 (211)
.+.|..|+.
T Consensus 3 ~~~C~~C~k 11 (28)
T 2kvf_A 3 PYSCSVCGK 11 (28)
T ss_dssp SEECSSSCC
T ss_pred CccCCCCCc
Confidence 478999987
No 109
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=25.00 E-value=29 Score=21.97 Aligned_cols=28 Identities=21% Similarity=0.565 Sum_probs=19.4
Q ss_pred ceecCCCCeEEccceEEEeCCceEEEecCCCC
Q 028291 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD 119 (211)
Q Consensus 88 p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~ 119 (211)
-..|.+|++-+ |+. ....+|.|.-|+..
T Consensus 18 ~~fCPkCG~~~--~ma--~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 18 HRFCPRCGPGV--FLA--EHADRYSCGRCGYT 45 (55)
T ss_dssp SCCCTTTTTTC--CCE--ECSSEEECTTTCCC
T ss_pred cccCcCCCCce--eEe--ccCCEEECCCCCCE
Confidence 35699999843 333 23447999999974
No 110
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.73 E-value=21 Score=17.21 Aligned_cols=9 Identities=33% Similarity=0.910 Sum_probs=7.0
Q ss_pred eEEEecCCC
Q 028291 110 SFVCNFCGL 118 (211)
Q Consensus 110 ~w~C~~C~~ 118 (211)
.|.|..|+.
T Consensus 2 ~~~C~~C~k 10 (29)
T 2m0f_A 2 PLKCRECGK 10 (29)
T ss_dssp CEECTTTSC
T ss_pred CccCCCCCC
Confidence 478888886
No 111
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=24.45 E-value=52 Score=20.40 Aligned_cols=22 Identities=18% Similarity=0.535 Sum_probs=16.9
Q ss_pred ceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 88 p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
-..|..|...+ |.+|.|..|.-
T Consensus 6 ~~~Cd~C~~~i---------g~R~~C~~C~d 27 (52)
T 1tot_A 6 VYTCNECKHHV---------ETRWHCTVCED 27 (52)
T ss_dssp CEEETTTTEEE---------SSEEEESSSSS
T ss_pred EEECCCCCCCC---------cceEEcCCCCC
Confidence 37899999751 46799999964
No 112
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=24.18 E-value=6.1 Score=26.74 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
.....|.+|++--.|..+-..+.....||.||.
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl 38 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEGIQCNACFI 38 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHH
T ss_pred CCCCcCCccCCCCCCccccCCCCCCccchHHHH
Confidence 457899999999888777521333378999987
No 113
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.10 E-value=56 Score=21.55 Aligned_cols=29 Identities=14% Similarity=0.287 Sum_probs=21.7
Q ss_pred CCceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
-++.+|..|++=+ .++......+|..|+.
T Consensus 6 L~iL~CP~ck~~L----~~~~~~~~LiC~~cg~ 34 (68)
T 2jr6_A 6 LDILVCPVTKGRL----EYHQDKQELWSRQAKL 34 (68)
T ss_dssp SCCCBCSSSCCBC----EEETTTTEEEETTTTE
T ss_pred hhheECCCCCCcC----eEeCCCCEEEcCCCCc
Confidence 3578999999732 2455566799999988
No 114
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=23.64 E-value=40 Score=25.50 Aligned_cols=28 Identities=29% Similarity=0.606 Sum_probs=21.1
Q ss_pred CCceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
...+.|..|.+- |.- .+|..|+|+-|++
T Consensus 25 ~~lP~CP~C~se---ytY--eDg~l~vCPeC~h 52 (138)
T 2akl_A 25 STLPPCPQCNSE---YTY--EDGALLVCPECAH 52 (138)
T ss_dssp CCSCCCTTTCCC---CCE--ECSSSEEETTTTE
T ss_pred ccCCCCCCCCCc---ceE--ecCCeEECCcccc
Confidence 457899999862 333 3566799999998
No 115
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.56 E-value=19 Score=20.27 Aligned_cols=12 Identities=25% Similarity=0.827 Sum_probs=9.8
Q ss_pred CCceEEEecCCC
Q 028291 107 NGKSFVCNFCGL 118 (211)
Q Consensus 107 ~g~~w~C~~C~~ 118 (211)
+.+.|.|.+|+.
T Consensus 9 ~~~~~~C~~C~k 20 (46)
T 2emi_A 9 GERHYECSECGK 20 (46)
T ss_dssp SCCCEECSSSCC
T ss_pred CCCCCCCCCCCc
Confidence 456799999998
No 116
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.56 E-value=32 Score=18.26 Aligned_cols=12 Identities=25% Similarity=0.830 Sum_probs=9.1
Q ss_pred CCceEEEecCCC
Q 028291 107 NGKSFVCNFCGL 118 (211)
Q Consensus 107 ~g~~w~C~~C~~ 118 (211)
+.+.|.|..|+.
T Consensus 6 ~~k~~~C~~C~k 17 (37)
T 2elm_A 6 SGHLYYCSQCHY 17 (37)
T ss_dssp SSCEEECSSSSC
T ss_pred CCcCeECCCCCc
Confidence 345688999987
No 117
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.34 E-value=29 Score=18.26 Aligned_cols=11 Identities=27% Similarity=1.198 Sum_probs=8.4
Q ss_pred CceEEEecCCC
Q 028291 108 GKSFVCNFCGL 118 (211)
Q Consensus 108 g~~w~C~~C~~ 118 (211)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (37)
T 2elp_A 7 GRAMKCPYCDF 17 (37)
T ss_dssp CCCEECSSSSC
T ss_pred CCCeECCCCCh
Confidence 45688999887
No 118
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.30 E-value=30 Score=18.06 Aligned_cols=11 Identities=27% Similarity=0.812 Sum_probs=8.7
Q ss_pred CceEEEecCCC
Q 028291 108 GKSFVCNFCGL 118 (211)
Q Consensus 108 g~~w~C~~C~~ 118 (211)
.+.|.|..|+.
T Consensus 7 ~k~~~C~~C~k 17 (36)
T 2elv_A 7 GLLYDCHICER 17 (36)
T ss_dssp CCCEECSSSCC
T ss_pred CCCeECCCCCC
Confidence 45688999987
No 119
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=23.19 E-value=42 Score=23.06 Aligned_cols=21 Identities=5% Similarity=0.078 Sum_probs=17.0
Q ss_pred EccceEEEeCCceEEEecCCC
Q 028291 98 RNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 98 iNp~~~~~~~g~~w~C~~C~~ 118 (211)
|.-|-++.+..++|+|.|..-
T Consensus 38 lC~ydKV~R~KnKWKc~LKdG 58 (79)
T 1nh2_C 38 LCLYDKVTRTKARWKCSLKDG 58 (79)
T ss_dssp EEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEeeecceEEEEEeee
Confidence 445889999999999999543
No 120
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.04 E-value=21 Score=22.10 Aligned_cols=33 Identities=18% Similarity=0.486 Sum_probs=21.5
Q ss_pred CCceecCCCCeEEcc------ceEEEeCCceEEEecCCC
Q 028291 86 SGLVRCCCCRGYRNP------FMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp------~~~~~~~g~~w~C~~C~~ 118 (211)
..+.+|..|+.-..- .++.-.+.+.|.|.+|+.
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~ 45 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSF 45 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCC
Confidence 457889999865432 222223456699999998
No 121
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=22.97 E-value=46 Score=20.74 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=19.2
Q ss_pred CceecCCCCeEEccceEEEeCCceE-----EEecCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w-----~C~~C~~ 118 (211)
...+|..|+--|-.- .+...++.| +|..|+.
T Consensus 4 ~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~ 39 (66)
T 1nyp_A 4 GVPICGACRRPIEGR-VVNAMGKQWHVEHFVCAKCEK 39 (66)
T ss_dssp CCCEETTTTEECCSC-EECCTTSBEETTTCBCTTTCC
T ss_pred CCCCCcccCCEecce-EEEECccccccCcCEECCCCC
Confidence 357888888877622 233345554 6777776
No 122
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=22.95 E-value=45 Score=25.95 Aligned_cols=33 Identities=3% Similarity=-0.371 Sum_probs=25.1
Q ss_pred ceecCCCC-----eEEccceEEEeC------CceEEEecCCCCC
Q 028291 88 LVRCCCCR-----GYRNPFMEFVDN------GKSFVCNFCGLDG 120 (211)
Q Consensus 88 p~RC~~C~-----aYiNp~~~~~~~------g~~w~C~~C~~~~ 120 (211)
-++|.+|+ -|||++-+..-. +=.|+|-+|++.+
T Consensus 37 kvkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~re~ 80 (164)
T 1zso_A 37 NIRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPKYS 80 (164)
T ss_dssp EEEETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSCCE
T ss_pred EEEECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCCcc
Confidence 38999998 488888877643 3368999999943
No 123
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=22.84 E-value=27 Score=16.92 Aligned_cols=9 Identities=33% Similarity=0.803 Sum_probs=7.2
Q ss_pred eEEEecCCC
Q 028291 110 SFVCNFCGL 118 (211)
Q Consensus 110 ~w~C~~C~~ 118 (211)
.+.|..|+.
T Consensus 2 ~~~C~~C~k 10 (29)
T 1rik_A 2 KFACPECPK 10 (29)
T ss_dssp CEECSSSSC
T ss_pred CccCCCCCc
Confidence 478888887
No 124
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=22.76 E-value=53 Score=21.67 Aligned_cols=28 Identities=21% Similarity=0.470 Sum_probs=21.0
Q ss_pred CceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
++.+|..|++=+ .++......+|..|+.
T Consensus 7 ~iL~CP~ck~~L----~~~~~~~~LiC~~cg~ 34 (68)
T 2hf1_A 7 EILVCPLCKGPL----VFDKSKDELICKGDRL 34 (68)
T ss_dssp EECBCTTTCCBC----EEETTTTEEEETTTTE
T ss_pred hheECCCCCCcC----eEeCCCCEEEcCCCCc
Confidence 478999999732 2455566799999987
No 125
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.75 E-value=46 Score=21.42 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=22.1
Q ss_pred CceecCCCCeEEccceEEEeCCceE-----EEecCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGL 118 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~~g~~w-----~C~~C~~ 118 (211)
...+|..|+-.|-+--.+...++.| +|..|+.
T Consensus 8 ~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~ 44 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSK 44 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCC
T ss_pred CCCCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCC
Confidence 4578999998887444455566665 5777776
No 126
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=22.72 E-value=47 Score=22.63 Aligned_cols=20 Identities=0% Similarity=0.008 Sum_probs=16.7
Q ss_pred EccceEEEeCCceEEEecCC
Q 028291 98 RNPFMEFVDNGKSFVCNFCG 117 (211)
Q Consensus 98 iNp~~~~~~~g~~w~C~~C~ 117 (211)
|.-|-++.+..++|+|.|..
T Consensus 36 lC~ydKV~R~KnkWKc~LKd 55 (76)
T 1nvp_C 36 VCQYDKIHRSKNKWKFHLKD 55 (76)
T ss_dssp EEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEeccCceEEEEEec
Confidence 45688899999999999954
No 127
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.69 E-value=22 Score=19.81 Aligned_cols=12 Identities=42% Similarity=0.938 Sum_probs=9.6
Q ss_pred CCceEEEecCCC
Q 028291 107 NGKSFVCNFCGL 118 (211)
Q Consensus 107 ~g~~w~C~~C~~ 118 (211)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (44)
T 2epv_A 9 GEKPYECNECGK 20 (44)
T ss_dssp CCCSEECSSSCC
T ss_pred CCcCeECCCCCc
Confidence 456789999998
No 128
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=22.67 E-value=37 Score=26.42 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=20.2
Q ss_pred ceecCCCCeEEccceEEEeCCceEEEecCCCC
Q 028291 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD 119 (211)
Q Consensus 88 p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~ 119 (211)
-.+|.+|++-|=| .++..+|+.|+..
T Consensus 140 ~a~~~~~g~~m~~------~~~~~~cp~~g~~ 165 (179)
T 3m7n_A 140 RALCSNCKTEMVR------EGDILKCPECGRV 165 (179)
T ss_dssp ECBCTTTCCBCEE------CSSSEECSSSCCE
T ss_pred EecccccCCceEE------CCCEEECCCCCCE
Confidence 4789999988744 2267999999983
No 129
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=22.45 E-value=17 Score=23.92 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=24.1
Q ss_pred CCceecCCCCeEEccceEE----EeCCceEEEecCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEF----VDNGKSFVCNFCGL 118 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~----~~~g~~w~C~~C~~ 118 (211)
..++.|..|......+|-- ......|.|..|..
T Consensus 22 ~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 22 TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 4689999999988877741 12234599999976
No 130
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.38 E-value=22 Score=19.94 Aligned_cols=12 Identities=33% Similarity=0.969 Sum_probs=9.5
Q ss_pred CCceEEEecCCC
Q 028291 107 NGKSFVCNFCGL 118 (211)
Q Consensus 107 ~g~~w~C~~C~~ 118 (211)
+.+.|.|.+|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2eml_A 9 GEKPYECSVCGK 20 (46)
T ss_dssp SCCSEECSSSCC
T ss_pred CCCCeeCCCcCC
Confidence 456789999988
No 131
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=22.38 E-value=25 Score=26.76 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=18.3
Q ss_pred ceecCCCCeEEccceEEEeCCceEEEecCCCC
Q 028291 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD 119 (211)
Q Consensus 88 p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~~ 119 (211)
.-||..|+-...-. ...-.|+.||..
T Consensus 132 ~y~C~~Cg~~~~~~------~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL------PPGGVCPDCGSK 157 (165)
T ss_dssp CEEESSSCCEESSC------CGGGBCTTTCCB
T ss_pred EEECCCCCCcccCC------CCCCcCCCCCCc
Confidence 57899999875433 222489999985
No 132
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=22.17 E-value=40 Score=24.92 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=13.5
Q ss_pred ccCCCCceecCCCCeEE
Q 028291 82 DFGESGLVRCCCCRGYR 98 (211)
Q Consensus 82 ~~~~~~p~RC~~C~aYi 98 (211)
+-|...++||.+|+..+
T Consensus 14 grGhv~~V~C~nCgr~v 30 (119)
T 2xzm_5 14 NRGHTRTVPCTNCGRQV 30 (119)
T ss_dssp SSSCCCEEECTTTCCEE
T ss_pred CCCCCccEeeCCccccC
Confidence 34667899999999875
No 133
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.77 E-value=27 Score=16.99 Aligned_cols=9 Identities=22% Similarity=0.940 Sum_probs=7.3
Q ss_pred eEEEecCCC
Q 028291 110 SFVCNFCGL 118 (211)
Q Consensus 110 ~w~C~~C~~ 118 (211)
.|.|..|+.
T Consensus 3 ~~~C~~C~k 11 (27)
T 2kvg_A 3 PYRCPLCRA 11 (27)
T ss_dssp TEEETTTTE
T ss_pred CcCCCCCCc
Confidence 478999986
No 134
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=21.57 E-value=25 Score=23.62 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=10.9
Q ss_pred CceecCCCCeEEcc
Q 028291 87 GLVRCCCCRGYRNP 100 (211)
Q Consensus 87 ~p~RC~~C~aYiNp 100 (211)
-|+||-.||..|.-
T Consensus 3 iPVRCFTCGkvi~~ 16 (70)
T 1twf_J 3 VPVRCFSCGKVVGD 16 (70)
T ss_dssp CCSBCTTTCCBCTT
T ss_pred CCeecCCCCCChHH
Confidence 37899999988753
No 135
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.50 E-value=28 Score=16.84 Aligned_cols=9 Identities=33% Similarity=1.431 Sum_probs=7.3
Q ss_pred eEEEecCCC
Q 028291 110 SFVCNFCGL 118 (211)
Q Consensus 110 ~w~C~~C~~ 118 (211)
.|.|..|+.
T Consensus 3 ~~~C~~C~~ 11 (30)
T 2m0d_A 3 PYQCDYCGR 11 (30)
T ss_dssp CEECTTTCC
T ss_pred CccCCCCCc
Confidence 578888887
No 136
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=21.29 E-value=31 Score=19.91 Aligned_cols=12 Identities=33% Similarity=1.107 Sum_probs=9.9
Q ss_pred CCceEEEecCCC
Q 028291 107 NGKSFVCNFCGL 118 (211)
Q Consensus 107 ~g~~w~C~~C~~ 118 (211)
+.+.|.|.+|+.
T Consensus 4 ~~kp~~C~~C~k 15 (48)
T 3iuf_A 4 RDKPYACDICGK 15 (48)
T ss_dssp TTSCEECTTTCC
T ss_pred CCcCEECCCcCc
Confidence 356799999998
No 137
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=21.13 E-value=44 Score=24.75 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=13.3
Q ss_pred ccCCCCceecCCCCeEE
Q 028291 82 DFGESGLVRCCCCRGYR 98 (211)
Q Consensus 82 ~~~~~~p~RC~~C~aYi 98 (211)
+-|...++||.+|+..+
T Consensus 14 grGhv~~V~C~nCgr~v 30 (119)
T 3u5c_a 14 GRGHVKPVRCVNCSKSI 30 (119)
T ss_dssp SCSCCCEEECTTTCCEE
T ss_pred CCCCCccEeeccccccc
Confidence 34567899999999764
No 138
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=21.10 E-value=33 Score=18.58 Aligned_cols=12 Identities=25% Similarity=0.791 Sum_probs=9.7
Q ss_pred CCceEEEecCCC
Q 028291 107 NGKSFVCNFCGL 118 (211)
Q Consensus 107 ~g~~w~C~~C~~ 118 (211)
+.+.|.|..|+.
T Consensus 7 ~~k~~~C~~C~k 18 (42)
T 2el5_A 7 GENPYECSECGK 18 (42)
T ss_dssp SCCSEECSSSCC
T ss_pred CCCCccCCCcCh
Confidence 345699999998
No 139
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.00 E-value=35 Score=18.45 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=9.6
Q ss_pred CCceEEEecCCC
Q 028291 107 NGKSFVCNFCGL 118 (211)
Q Consensus 107 ~g~~w~C~~C~~ 118 (211)
+.+.|.|..|+.
T Consensus 7 ~~k~~~C~~C~k 18 (41)
T 2ept_A 7 GQRVYECQECGK 18 (41)
T ss_dssp CCCCEECSSSCC
T ss_pred CCCCeECCCCCC
Confidence 345799999998
No 140
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.97 E-value=25 Score=19.70 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=9.6
Q ss_pred CCceEEEecCCC
Q 028291 107 NGKSFVCNFCGL 118 (211)
Q Consensus 107 ~g~~w~C~~C~~ 118 (211)
+.+.|.|..|+.
T Consensus 9 ~~k~~~C~~C~k 20 (46)
T 2em4_A 9 GQRPYECIECGK 20 (46)
T ss_dssp CSSSEECSSSCC
T ss_pred CCcCcCCCCCCC
Confidence 456789999998
No 141
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=20.70 E-value=90 Score=17.81 Aligned_cols=7 Identities=43% Similarity=1.056 Sum_probs=3.6
Q ss_pred EEecCCC
Q 028291 112 VCNFCGL 118 (211)
Q Consensus 112 ~C~~C~~ 118 (211)
.|.-||.
T Consensus 23 ~C~aCG~ 29 (36)
T 1k81_A 23 KCMACGA 29 (36)
T ss_dssp EEETTTE
T ss_pred EhhcCCC
Confidence 3555554
No 142
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=20.62 E-value=37 Score=18.34 Aligned_cols=12 Identities=25% Similarity=0.897 Sum_probs=9.6
Q ss_pred CCceEEEecCCC
Q 028291 107 NGKSFVCNFCGL 118 (211)
Q Consensus 107 ~g~~w~C~~C~~ 118 (211)
+.+.|.|..|+.
T Consensus 8 ~~~~~~C~~C~k 19 (42)
T 2epc_A 8 GETPYLCGQCGK 19 (42)
T ss_dssp SSCCEECSSSCC
T ss_pred CCCCeECCCCCc
Confidence 446699999998
No 143
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=20.60 E-value=49 Score=28.33 Aligned_cols=30 Identities=17% Similarity=0.528 Sum_probs=22.0
Q ss_pred CceecCCCCeEEccceEEEe------CCceEEEecCCC
Q 028291 87 GLVRCCCCRGYRNPFMEFVD------NGKSFVCNFCGL 118 (211)
Q Consensus 87 ~p~RC~~C~aYiNp~~~~~~------~g~~w~C~~C~~ 118 (211)
.-..|.-||+. |...+.. +.+...|++|++
T Consensus 181 ~~~~CPvCGs~--P~~s~l~~~g~~~G~R~l~Cs~C~t 216 (309)
T 2fiy_A 181 SRTLCPACGSP--PMAGMIRQGGKETGLRYLSCSLCAC 216 (309)
T ss_dssp TCSSCTTTCCC--EEEEEEEC----CCEEEEEETTTCC
T ss_pred cCCCCCCCCCc--CceeEEeecCCCCCcEEEEeCCCCC
Confidence 35789999997 5555443 336789999999
No 144
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=20.41 E-value=24 Score=22.60 Aligned_cols=12 Identities=33% Similarity=0.586 Sum_probs=9.6
Q ss_pred ceecCCCCeEEc
Q 028291 88 LVRCCCCRGYRN 99 (211)
Q Consensus 88 p~RC~~C~aYiN 99 (211)
|+||-.||..|.
T Consensus 3 PVRCFTCGkvi~ 14 (55)
T 1ef4_A 3 PVRCLSCGKPVS 14 (55)
T ss_dssp SSSCSCTTSCCH
T ss_pred CeecCCCCCChh
Confidence 789999988764
No 145
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=20.30 E-value=33 Score=18.37 Aligned_cols=11 Identities=36% Similarity=1.090 Sum_probs=9.0
Q ss_pred CceEEEecCCC
Q 028291 108 GKSFVCNFCGL 118 (211)
Q Consensus 108 g~~w~C~~C~~ 118 (211)
.+.|.|..|+.
T Consensus 4 ~k~~~C~~C~k 14 (39)
T 1njq_A 4 PRSYTCSFCKR 14 (39)
T ss_dssp SSSEECTTTCC
T ss_pred CCceECCCCCc
Confidence 35689999998
No 146
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=20.21 E-value=49 Score=26.76 Aligned_cols=28 Identities=18% Similarity=0.494 Sum_probs=18.8
Q ss_pred ceecCCCCeEEccceEEEeCCceEEEecCCC
Q 028291 88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118 (211)
Q Consensus 88 p~RC~~C~aYiNp~~~~~~~g~~w~C~~C~~ 118 (211)
-.+|..|++= .-| .+..+| .|.|+-||.
T Consensus 14 ~~~CP~Cg~~-d~~-~~~~dg-~~~C~~Cg~ 41 (255)
T 1nui_A 14 HIPCDNCGSS-DGN-SLFSDG-HTFCYVCEK 41 (255)
T ss_dssp EECCSSSCCS-SCE-EEETTS-CEEETTTCC
T ss_pred CCcCCCCCCC-CCc-eEeCCC-CeecccCCC
Confidence 4789999882 122 222355 599999998
No 147
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.12 E-value=50 Score=21.51 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=23.2
Q ss_pred CCceecCCCCeEEccceEEEeCCceE-----EEecCCCC
Q 028291 86 SGLVRCCCCRGYRNPFMEFVDNGKSF-----VCNFCGLD 119 (211)
Q Consensus 86 ~~p~RC~~C~aYiNp~~~~~~~g~~w-----~C~~C~~~ 119 (211)
....+|..|+-.|-.- .+...++.| +|..|+..
T Consensus 13 ~~~~~C~~C~~~I~~~-~~~a~~~~~H~~CF~C~~C~~~ 50 (79)
T 1x62_A 13 QKLPMCDKCGTGIVGV-FVKLRDRHRHPECYVCTDCGTN 50 (79)
T ss_dssp CCCCCCSSSCCCCCSS-CEECSSCEECTTTTSCSSSCCC
T ss_pred CCCCccccCCCCccCc-EEEECcceeCcCcCeeCCCCCC
Confidence 4568999999988763 344556666 68888773
Done!