BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028292
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 207 bits (528), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/169 (62%), Positives = 130/169 (76%), Gaps = 3/169 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+L+IG+SGVGKS+LLL FT DTF+ EL+ TIGVDFK+K +++ G K KLAIWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
RFRTLT SYYRGAQG+I+VYDVTRRDTF L D W E++ Y T D + LVGNK+DKE
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNXLVGNKIDKE 134
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
+ R V + EG+ FAR++ LF+E SAKT V+ FEELV KI+ TP L
Sbjct: 135 N-REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 189 bits (481), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 100/168 (59%), Positives = 122/168 (72%), Gaps = 3/168 (1%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ + TIGVDFKI+ ++L K +KL IWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWD 64
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT RD+F N+ W +EID Y+ ++ KLLVGN
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQ-WIQEIDRYAM-ENVNKLLVGN 122
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
K D S+RVV+ EG + A +G F+E SAK NVEQ F + +I
Sbjct: 123 KCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 186 bits (472), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 122/173 (70%), Gaps = 3/173 (1%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
S+ E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +K
Sbjct: 7 SSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 66
Query: 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ K
Sbjct: 67 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 124
Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
LLVGNK D +++VV +FA G FLE SAK NVEQ F + +I
Sbjct: 125 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 185 bits (469), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 120/168 (71%), Gaps = 3/168 (1%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+ W +EID Y++ ++ KLLVGN
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGN 122
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
K D +++VV +FA G FLE SAK NVEQ F + +I
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 120/168 (71%), Gaps = 3/168 (1%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 5 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 64
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT ++++ N+ W +EID Y++ ++ KLLVGN
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKLLVGN 122
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
K D +++VV +FA G FLE SAK NVEQ F + +I
Sbjct: 123 KSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 98/173 (56%), Positives = 122/173 (70%), Gaps = 3/173 (1%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
S+ E+DYLFKLLLIGDSGVGK+ LLL F DT+ E TIGVDFKI+ + L GK +K
Sbjct: 7 SSMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 66
Query: 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ K
Sbjct: 67 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 124
Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
LLVGNK D +++VV +FA G FLE SAK NVEQ F + +I
Sbjct: 125 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 184 bits (468), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/173 (57%), Positives = 121/173 (69%), Gaps = 3/173 (1%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK 62
S+ E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +K
Sbjct: 24 SSXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 83
Query: 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ K
Sbjct: 84 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 141
Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
LLVGNK D +++VV +FA G FLE SAK NVEQ F +I
Sbjct: 142 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 184 bits (467), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 98/168 (58%), Positives = 120/168 (71%), Gaps = 3/168 (1%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 2 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ KLLVGN
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 119
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
K D +++VV +FA G FLE SAK NVEQ F + +I
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 184 bits (466), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 98/168 (58%), Positives = 120/168 (71%), Gaps = 3/168 (1%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 21 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 80
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ KLLVGN
Sbjct: 81 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 138
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
K D +++VV +FA G FLE SAK NVEQ F + +I
Sbjct: 139 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 3/168 (1%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+D LFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 2 EYDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 61
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ KLLVGN
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGN 119
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
K D +++VV +FA G FLE SAK NVEQ F + +I
Sbjct: 120 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 181 bits (458), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 3/168 (1%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ KLLVG
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGI 121
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
K D +++VV +FA G FLE SAK NVEQ F + +I
Sbjct: 122 KCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 176 bits (447), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 134/206 (65%), Gaps = 9/206 (4%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIG+SGVGKS LLL F+ DT+ + TIGVDFKIK V L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRG+ GII+VYDVT +++F N +W +EID Y+T+ +KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATST-VLKLLVGN 121
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSS 187
K D + +RVV +FA FLE SA NVE F + +I ++ S + +
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNET 181
Query: 188 GVKK----NIFKESPPQNDASTTGCC 209
KK N+ Q+ +T GCC
Sbjct: 182 TQKKEDKGNV--NLKGQSLTNTGGCC 205
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 175 bits (443), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/173 (56%), Positives = 121/173 (69%), Gaps = 3/173 (1%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIG+SGVGKS LLL F+ DT+ + TIGVDFKIK V L GK +KL IWD
Sbjct: 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRG+ GII+VYDVT +++F N +W +EID Y+T+ +KLLVGN
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATST-VLKLLVGN 121
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
K D + +RVV +FA FLE SA NVE F + +I ++ S
Sbjct: 122 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 174 bits (440), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/168 (57%), Positives = 118/168 (70%), Gaps = 3/168 (1%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFKLLLIG+SGVGKS LLL F+ DT+ + TIGVDFKIK V L GK +KL IWD
Sbjct: 17 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWD 76
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+TSSYYRG+ GII+VYDVT +++F N +W +EID Y+T+ +KLLVGN
Sbjct: 77 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESF-NGVKMWLQEIDRYATST-VLKLLVGN 134
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
K D + +RVV +FA FLE SA NVE F + +I
Sbjct: 135 KCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/162 (57%), Positives = 114/162 (70%), Gaps = 3/162 (1%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KLLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
FRT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ KLLVGNK D +
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCDLTT 118
Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
++VV +FA G FLE SAK NVEQ F + +I
Sbjct: 119 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 171 bits (434), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/160 (53%), Positives = 115/160 (71%), Gaps = 3/160 (1%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDT 68
+ YLFK ++IGD+GVGKS LLL FT F+ + TIGV+F + + + GK++KL IWDT
Sbjct: 7 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AGQE FR++T SYYRGA G ++VYD+TRRDTF +L W ++ +S N + + +L+GNK
Sbjct: 67 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIGNK 124
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
D ES R V K+EG FARE+G +F+E SAKT NVE+ F
Sbjct: 125 SDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 171 bits (432), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 116/167 (69%), Gaps = 3/167 (1%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDT 68
+DYLFKLLLIGDSGVGK+ +L F+ D F TIG+DFKI+ + L GK++KL IWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDT 64
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AGQERFRT+T++YYRGA GI++VYD+T +F N+ + W + I+ +++ D K+++GNK
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMILGNK 122
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
D +R VSK+ G A +YG F+E SAK +NVE F L I
Sbjct: 123 CDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 169 bits (429), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 115/168 (68%), Gaps = 3/168 (1%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWD 67
DYLFKLLLIGDSGVGK+ +L F+ D F TIG+DFKI+ + L GK++KL IWD
Sbjct: 2 HMDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFRT+T++YYRGA GI++VYD+T +F N+ + W + I+ +++ D K+++GN
Sbjct: 62 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMILGN 119
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
K D +R VSK+ G A +YG F+E SAK +NVE F L I
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/174 (52%), Positives = 118/174 (67%), Gaps = 13/174 (7%)
Query: 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIW 66
+++D+LFKLL+IGDSGVGKS+LLL F +TF TIGVDFKI+ V + G+K+KL IW
Sbjct: 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIW 63
Query: 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC---IKL 123
DTAGQERFRT+TS+YYRG G+I+VYDVT ++F N+ W EI NQ+C ++
Sbjct: 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEI-----NQNCDDVCRI 117
Query: 124 LVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ---CFEELVLK 174
LVGNK D +VV ++ FA + G E SAK VNVE+ C ELVL+
Sbjct: 118 LVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 94/189 (49%), Positives = 127/189 (67%), Gaps = 7/189 (3%)
Query: 2 ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKK 60
ASS + + +D + K+LLIGDSGVGKS LL+ F D F TIG+DFKIK V + GKK
Sbjct: 9 ASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK 68
Query: 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
+KL +WDTAGQERFRT+T++YYRGA GII+VYDVT TFTN+ W K ++ ++ N +
Sbjct: 69 VKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEA 126
Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF---EELVLKILD 177
LLVGNK D E+ RVV+ +G A+E G F+E SAK NV + F +L+ + +D
Sbjct: 127 QLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID 185
Query: 178 TPSLLSEGS 186
+ L+ G+
Sbjct: 186 SNKLVGVGN 194
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 166 bits (421), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 87/176 (49%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGK 59
+ S+T+ + Y+FK ++IGD GVGKS LL FT F P TIGV+F + + + G+
Sbjct: 3 LGSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ 62
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
K+KL IWDTAGQERFR +T SYYRGA G +MVYD+TRR T+ +L+ +L TN +
Sbjct: 63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPN 120
Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ +L+GNK D E++R V+ +E FA E G LFLE SAKT NVE F E KI
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 166 bits (420), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 114/158 (72%), Gaps = 3/158 (1%)
Query: 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAG 70
YLFK ++IGD+GVGKS LLL FT F+ + TIGV+F + V + GK++KL IWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
QE FR++T SYYRGA G ++VYD+TRR+TF +L W ++ +S++ I +L+GNK D
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHSSSNMVI-MLIGNKSD 137
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
ES R V ++EG FARE+G +F+E SAKT NVE+ F
Sbjct: 138 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/175 (48%), Positives = 115/175 (65%), Gaps = 3/175 (1%)
Query: 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAI 65
Q FDY+FKLL+IG+S VGK++ L + DTF T+G+DFK+K V K++KL I
Sbjct: 17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQI 76
Query: 66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
WDTAGQER+RT+T++YYRGA G I++YD+T ++F + D WA +I YS + + +LV
Sbjct: 77 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSWDNAQV-ILV 134
Query: 126 GNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
GNK D E ERVV ++G A + G F E SAK ++V Q FE LV I D S
Sbjct: 135 GNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMS 189
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/164 (48%), Positives = 111/164 (67%), Gaps = 3/164 (1%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
FDY+FK+L+IG+S VGK++ L + D+F T+G+DFK+K + K++KL IWDT
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AGQER+RT+T++YYRGA G I++YD+T ++F + D W+ +I YS + + LLVGNK
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGNK 119
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
D E ERVVS + G A G F E SAK +NV+Q FE LV
Sbjct: 120 CDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 162 bits (411), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 87/203 (42%), Positives = 121/203 (59%), Gaps = 10/203 (4%)
Query: 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIW 66
FDY FK+L+IG+S VGK++ L + D+F T+G+DFK+K + K++KL IW
Sbjct: 3 HXFDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIW 62
Query: 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
DTAG ER+RT+T++YYRGA G I+ YD+T ++F + D W+ +I YS + + LLVG
Sbjct: 63 DTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVG 120
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI-------LDTP 179
NK D E ERVVS + G A G F E SAK +NV+Q FE LV I LDT
Sbjct: 121 NKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDTA 180
Query: 180 SLLSEGSSGVKKNIFKESPPQND 202
G+ + +++PP D
Sbjct: 181 DPAVTGAKQGPQLTDQQAPPHQD 203
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 110/159 (69%), Gaps = 4/159 (2%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
D + K+LLIGDSGVGKS LL+ F D F TIG+DFKIK V + GKK+KL IWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
GQERFRT+T++YYRGA GII+VYD+T TFTN+ W K ++ ++ N + LLVGNK
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
D E+ RVV+ +G A+E G F+E SAK NV + F
Sbjct: 119 DMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 112/173 (64%), Gaps = 3/173 (1%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMK 62
+T+ + Y+FK ++IGD GVGKS LL FT F P TIGV+F + + + G+K+K
Sbjct: 21 ATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIK 80
Query: 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
L IWDTAGQ RFR +T SYYRGA G +MVYD+TRR T+ +L+ +L TN + +
Sbjct: 81 LQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPNTVI 138
Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+L+GNK D E++R V+ +E FA E G LFLE SAKT NVE F E KI
Sbjct: 139 ILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 160 bits (405), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 124/173 (71%), Gaps = 4/173 (2%)
Query: 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLA 64
S + D+ ++++IG GVGK++L+ FT DTF E T+GVDFKIK V L GKK++L
Sbjct: 19 SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78
Query: 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
IWDTAGQERF ++TS+YYR A+GII+VYD+T+++TF +L W K ID Y++ +D LL
Sbjct: 79 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYAS-EDAELLL 136
Query: 125 VGNKVDKESERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVLKIL 176
VGNK+D E++R +++++G FA++ G F E SAK NV++ F +LV IL
Sbjct: 137 VGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 160 bits (405), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 110/159 (69%), Gaps = 4/159 (2%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
D + K+LLIGDSGVGKS LL+ F D F TIG+DFKIK V + GKK+KL IWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
GQERFRT+T++YYRGA GII+VYD+T TFTN+ W K ++ ++ N + LLVGNK
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
D E+ RVV+ +G A+E G F+E SAK NV + F
Sbjct: 119 DXET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 160 bits (404), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 110/159 (69%), Gaps = 4/159 (2%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
D + K+LLIGDSGVGKS LL+ F D F TIG+DFKIK V + GKK+KL +WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
GQERFRT+T++YYRGA GII+VYDVT TFTN+ W K ++ ++ N + LLVGNK
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
D E+ RVV+ +G A+E G F+E SAK NV + F
Sbjct: 119 DXET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 109/157 (69%), Gaps = 4/157 (2%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
+ K+LLIGDSGVGKS LL+ F D F TIG+DFKIK V + GKK+KL +WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
ERFRT+T++YYRGA GII+VYDVT TFTN+ W K ++ ++ N + LLVGNK D
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDM 124
Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
E+ RVV+ +G A+E G F+E SAK NV + F
Sbjct: 125 ET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 160
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 111/163 (68%), Gaps = 3/163 (1%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
DY+FKLLLIG+S VGK++ L + D+F T+G+DFK+K V K++KL IWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
GQER+RT+T++YYRGA G +++YD+ +++F + D WA +I YS + + +LVGNK
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNAQV-ILVGNKC 137
Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
D E ERVV ++G A + G F E SAK +NV+Q FE LV
Sbjct: 138 DLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 116/172 (67%), Gaps = 3/172 (1%)
Query: 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLA 64
S +++D+LFK++LIG++GVGK+ L+ FT F TIGVDF IK V + G+K+KL
Sbjct: 19 SMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQ 78
Query: 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
IWDTAGQERFR++T SYYR A +I+ YD+T ++F L + W +EI+ Y++N+ I +L
Sbjct: 79 IWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYASNK-VITVL 136
Query: 125 VGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
VGNK+D R VS++ +F+ +LE SAK NVE+ F +L +++
Sbjct: 137 VGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 111/175 (63%), Gaps = 3/175 (1%)
Query: 2 ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKK 60
A T E+DYLFK++LIGDSGVGKS LL FT + F E TIGV+F + + + GK
Sbjct: 18 AMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77
Query: 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
+K IWDTAGQER+R +TS+YYRGA G ++VYD+ + T+ N+ + W KE+ ++ + +
Sbjct: 78 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNI 135
Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ +LVGNK D R V E FA + G F+E SA NVE F+ ++ +I
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 113/170 (66%), Gaps = 4/170 (2%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKM-KLAIWD 67
+DYLFK++LIGDSGVGKS LL FT D F E TIGV+F K + L K+ K IWD
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQER+R +TS+YYRGA G ++VYD+T++++F N+ + W KE+ + + + + LLVGN
Sbjct: 64 TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELR-DNADSNIVILLVGN 121
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
K D + RV++ + +A++ F+E SA NVE F +L+ +I +
Sbjct: 122 KSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYN 171
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 107/161 (66%), Gaps = 4/161 (2%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWD 67
+D FK++L+GDSGVGK+ LL+ F F T+G+DF+ K + + G K+KL +WD
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAGQERFR++T +YYR A ++++YDVT + +F N+ W EI Y+ D +L+GN
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNI-QAWLTEIHEYA-QHDVALMLLGN 124
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
KVD ERVV +++G A+EYG F+E SAKT +NV+ F
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 146 bits (369), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 110/175 (62%), Gaps = 3/175 (1%)
Query: 2 ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKK 60
A T E+DYLFK++LIGDSGVGKS LL FT + F E TIGV+F + + + GK
Sbjct: 18 AMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77
Query: 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
+K IWDTAG ER+R +TS+YYRGA G ++VYD+ + T+ N+ + W KE+ ++ + +
Sbjct: 78 IKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNI 135
Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ +LVGNK D R V E FA + G F+E SA NVE F+ ++ +I
Sbjct: 136 VIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 108/167 (64%), Gaps = 3/167 (1%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
+DYLFK++LIGDSGVGKS LL FT + F E TIGV+F + + + GK +K IWDT
Sbjct: 17 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 76
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AGQER+R +TS+YYRGA G ++VYD+ + T+ N+ + W KE+ ++ + + + +LVGNK
Sbjct: 77 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGNK 134
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
D R V E FA + G F+E SA NVE F+ ++ +I
Sbjct: 135 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 181
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 115/171 (67%), Gaps = 3/171 (1%)
Query: 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIW 66
+ +D+LFK L+IG++G GKS LL F F++ S TIGV+F K + +GGK +KL IW
Sbjct: 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 64
Query: 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
DTAGQERFR++T SYYRGA G ++VYD+T R+T+ L + W + + ++ Q+ + +L G
Sbjct: 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 122
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
NK D +++R V+ E FA+E +FLE SA T NVE+ F + KIL+
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 173
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 145 bits (365), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 75/167 (44%), Positives = 108/167 (64%), Gaps = 3/167 (1%)
Query: 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDT 68
+DYLFK++LIGDSGVGKS LL FT + F E TIGV+F + + + GK +K IWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AGQER+R +TS+YYRGA G ++VYD+ + T+ N+ + W KE+ ++ + + + +LVGNK
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGNK 119
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
D R V E FA + F+E SA NVE+ F+ ++ +I
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 108/168 (64%), Gaps = 3/168 (1%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFK++LIGDSGVGKS LL FT + F E TIGV+F + + + GK +K IWD
Sbjct: 4 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 63
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAG ER+R +TS+YYRGA G ++VYD+ + T+ N+ + W KE+ ++ + + + +LVGN
Sbjct: 64 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGN 121
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
K D R V E FA + G F+E SA NVE F+ ++ +I
Sbjct: 122 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 169
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 108/172 (62%), Gaps = 3/172 (1%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKL 63
T E+DYLFK++LIGDSGVGKS LL FT + F E TIGV+F + + + GK +K
Sbjct: 3 TRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 62
Query: 64 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL 123
IWDTAG ER+R +TS+YYRGA G ++VYD+ + T+ N+ + W KE+ ++ + + +
Sbjct: 63 QIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIX 120
Query: 124 LVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
LVGNK D R V E FA + G F+E SA NVE F+ ++ +I
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 143 bits (361), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 115/171 (67%), Gaps = 3/171 (1%)
Query: 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIW 66
+ +D+LFK L+IG++G GKS LL F F++ S TIGV+F K + +GGK +KL IW
Sbjct: 6 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 65
Query: 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
DTAGQERFR++T SYYRGA G ++VYD+T R+T+ L + W + + ++ Q+ + +L G
Sbjct: 66 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 123
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
NK D +++R V+ E FA+E +FLE SA T +VE+ F + KIL+
Sbjct: 124 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 174
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 143 bits (360), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/168 (45%), Positives = 107/168 (63%), Gaps = 3/168 (1%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWD 67
E+DYLFK++LIGDSGVGKS LL FT + F E TIGV+F + + + GK +K IWD
Sbjct: 1 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 60
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127
TAG ER+R +TS+YYRGA G ++VYD+ + T+ N+ + W KE+ ++ + + + LVGN
Sbjct: 61 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIXLVGN 118
Query: 128 KVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
K D R V E FA + G F+E SA NVE F+ ++ +I
Sbjct: 119 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/116 (64%), Positives = 90/116 (77%), Gaps = 3/116 (2%)
Query: 16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
LLLIGDSGVGKS LLL F DT+ E TIGVDFKI+ + L GK +KL IWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
RT+TSSYYRGA GII+VYDVT +++F N+ W +EID Y++ ++ KLLVGNK D
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCD 114
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 108/168 (64%), Gaps = 3/168 (1%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTA 69
D+LFK L+IG +G GKS LL F + F++ S TIGV+F + V +GGK +KL IWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129
GQERFR++T SYYRGA G ++VYD+T R+T+ +LA L S N + +L GNK
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKK 140
Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
D + ER V+ E FA+E +FLE SA T NVE+ F + IL+
Sbjct: 141 DLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 107/174 (61%), Gaps = 5/174 (2%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWD 67
++DYLFK++LIGDSGVGKS LL FT+D F E TIGV+F + + + KK+K IWD
Sbjct: 6 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWD 65
Query: 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVG 126
TAG ER+R +TS+YYRGA G ++VYD+++ ++ N + W E L D + + L+G
Sbjct: 66 TAGLERYRAITSAYYRGAVGALIVYDISKSSSYEN-CNHWLTE--LRENADDNVAVGLIG 122
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180
NK D R V E +FA E LF E SA NV++ F EL++ I S
Sbjct: 123 NKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVS 176
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 141 bits (356), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 117/204 (57%), Gaps = 7/204 (3%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGK 59
M+S ++D LFK++LIGDSGVGKS LL FT + F + TIGV+F + + + GK
Sbjct: 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGK 60
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
++K IWDTAGQER+R +TS+YYRGA G ++VYD+++ ++ N + W E L D
Sbjct: 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYEN-CNHWLSE--LRENADD 117
Query: 120 CIKL-LVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
+ + L+GNK D R V +E FA+E LF E SA NV++ FEEL+ I
Sbjct: 118 NVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQK 177
Query: 179 PS--LLSEGSSGVKKNIFKESPPQ 200
S + G S N S P
Sbjct: 178 VSKHQMDLGDSSANGNANGASAPN 201
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 112/179 (62%), Gaps = 8/179 (4%)
Query: 2 ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK 60
S +++D+LFKL+L+GD+ VGK+ ++ F + F E TIGVDF +K + + GK+
Sbjct: 18 GSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKR 77
Query: 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC 120
+KL IWDTAGQERFRT+T SYYR A G I+ YD+T+R +F ++ W +++ Y+ +
Sbjct: 78 VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNI 135
Query: 121 IKLLVGNKVDKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCF----EELVLK 174
++LL+GNK D R VS E A Y L +E SAK NVE+ F EL+++
Sbjct: 136 VQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 140 bits (353), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 114/171 (66%), Gaps = 3/171 (1%)
Query: 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIW 66
+ +D+LFK L+IG++G GKS LL F F++ S TIGV+F K + +GGK +KL IW
Sbjct: 3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 62
Query: 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
DTAG ERFR++T SYYRGA G ++VYD+T R+T+ L + W + + ++ Q+ + +L G
Sbjct: 63 DTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILCG 120
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
NK D +++R V+ E FA+E +FLE SA T +VE+ F + KIL+
Sbjct: 121 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 171
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 108/174 (62%), Gaps = 5/174 (2%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKL 63
+ ++++++FK++LIG+SGVGK+ LL FT + F S TIGV+F + V LG +K
Sbjct: 2 SHMEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKA 61
Query: 64 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-K 122
IWDTAG ER+R +TS+YYRGA G ++V+D+T+ T+ + + W KE LY + I
Sbjct: 62 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKE--LYDHAEATIVV 118
Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
+LVGNK D R V +E FA G LFLE SA NVE FE ++ +I
Sbjct: 119 MLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/171 (44%), Positives = 107/171 (62%), Gaps = 5/171 (2%)
Query: 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIW 66
++++++FK++LIG+SGVGK+ LL FT + F S TIGV+F + V LG +K IW
Sbjct: 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIW 79
Query: 67 DTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLV 125
DTAG ER+R +TS+YYRGA G ++V+D+T+ T+ + + W KE LY + I +LV
Sbjct: 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKE--LYDHAEATIVVMLV 136
Query: 126 GNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
GNK D R V +E FA G LFLE SA NVE FE ++ +I
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 96/158 (60%), Gaps = 6/158 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+L+G++ VGKS+++L F S+ F E PTIG F + V + +K IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
F +L YYR AQ ++VYDVT+ +F A W KE+ ++D I LVGNK+D
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIK-ARHWVKELH-EQASKDIIIALVGNKIDXLQ 122
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168
+ ER V+++EG A E G LF E SAKT NV F
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
R+ +L YYRGAQ I+VYD+T DTF A W KE+ ++ I L GNK D
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIA-LAGNKADLA 121
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
S+R V +E +A + LF+E SAKT +NV + F + K+
Sbjct: 122 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 111/181 (61%), Gaps = 16/181 (8%)
Query: 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGK-------- 59
++DYL KLL +GDSGVGK+T L +T + F + T+G+DF+ K V +
Sbjct: 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGK 80
Query: 60 --KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI--DLYS 115
K+ L +WDTAGQERFR+LT++++R A G ++++D+T + +F N+ + W ++ + Y
Sbjct: 81 AFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYC 139
Query: 116 TNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
N D + L+GNK D +R V++++ + A +YG + E SA T NVE+ E L+ I
Sbjct: 140 ENPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197
Query: 176 L 176
+
Sbjct: 198 M 198
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 98/163 (60%), Gaps = 3/163 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+ L+GD+GVGKS+++ F D F+ +SPTIG F K V G + K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
RF +L YYRG+ ++VYD+T++D+F L W KE+ + ++ + + GNK D
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-WVKELKEHGP-ENIVMAIAGNKCDLS 141
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
R V K+ ++A G + +E SAK +N+E+ F+ + +I
Sbjct: 142 DIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
R+ +L YYRGAQ I+VYD+T ++TF A W KE+ ++ I L GNK D
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQASPSIVIA-LAGNKADLA 126
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
++R+V +E +A + LF+E SAKT +NV F + K+
Sbjct: 127 NKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TI F + V L +K IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
R+ +L YYRGAQ I+VYD+T DTF A W KE+ ++ I L GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIA-LAGNKADLA 123
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
S+R V +E +A + LF+E SAKT +NV + F + K+
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 123/208 (59%), Gaps = 26/208 (12%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-------- 54
S + ++DYL KLL +GDSGVGK+T L +T + F + T+G+DF+ K V
Sbjct: 2 SMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 55 ALGGK--KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI- 111
GK K+ L +WDTAG ERFR+LT++++R A G ++++D+T + +F N+ + W ++
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQ 120
Query: 112 -DLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE- 169
+ Y N D + L+GNK D +R V++++ + A +YG + E SA T NVE+ E
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 170 --ELVLKILD-------TPSLLSEGSSG 188
+L++K ++ P ++ G+SG
Sbjct: 179 LLDLIMKRMEKCVEKTQVPDTVNGGNSG 206
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 102/168 (60%), Gaps = 3/168 (1%)
Query: 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAG 70
Y FK++L+G+ VGK++L+L + + F + T+G F K + +GGK++ LAIWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
QERF L YYR + G I+VYD+T D+F + + W KE+ N+ C+ +VGNK+D
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 122
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
E ER VS +E +A G SAK +E+ F +L ++++T
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
R+ +L YYRGAQ I+VYD+T DTF A W KE+ ++ I L GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFAR-AKNWVKELQRQASPNIVIA-LAGNKADLA 123
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
S+R V +E +A + LF+E SAKT +NV + F + K+
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/166 (38%), Positives = 98/166 (59%), Gaps = 3/166 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+ L+GD+GVGKS+++ F D+F+ ++PTIG F K V + K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
RFR L YYRG+ I+VYD+T+ +TF+ L + W +E+ + + + GNK D
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGP-PSIVVAIAGNKCDLT 123
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
R V +++ D+A +F+E SAK +N+ + F E+ +I T
Sbjct: 124 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 169
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 112/184 (60%), Gaps = 12/184 (6%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHV-------- 54
S S ++DYL K L +GDSGVGK+++L +T F + T+G+DF+ K V
Sbjct: 2 SMSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPD 61
Query: 55 -ALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEID 112
A+G G+++ L +WDTAG ERFR+LT++++R A G ++++D+T +F N+ + W ++
Sbjct: 62 GAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQ 120
Query: 113 LYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
+++ +++ +L GNK D E +R V ++E + A +YG + E SA N+ E L+
Sbjct: 121 MHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLL 180
Query: 173 LKIL 176
I+
Sbjct: 181 DLIM 184
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 125
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
++R V +E +A + LF+E SAKT +NV + F + K+
Sbjct: 126 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
++R V +E +A + LF+E SAKT +NV + F + K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 113/186 (60%), Gaps = 16/186 (8%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVAL------ 56
S + ++DYL KLL +GDSGVGK+T L +T + F + T+G+DF+ K V
Sbjct: 2 SMTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 57 --GGK--KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI- 111
GK K+ L +WDTAG ERFR+LT++++R A G ++++D+T + +F N+ + W ++
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQ 120
Query: 112 -DLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170
+ Y N D + L+GNK D +R V++++ + A +YG + E SA T NVE+ E
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 171 LVLKIL 176
L+ I+
Sbjct: 179 LLDLIM 184
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
++R V +E +A + LF+E SAKT +NV + F + K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
++R V +E +A + LF+E SAKT +NV + F + K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
++R V +E +A + LF+E SAKT +NV + F + K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 94/163 (57%), Gaps = 3/163 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 125
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
++R V +E +A + LF E SAKT NV + F + K+
Sbjct: 126 NKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
++R V +E +A + LF+E SAKT +NV + F + K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 124
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
++R V +E +A + LF+E SAKT +NV + F + K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 110/182 (60%), Gaps = 16/182 (8%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVAL------ 56
S + ++DYL KLL +GDSGVGK+T L +T + F + T+G+DF+ K V
Sbjct: 2 SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 57 --GGK--KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI- 111
GK K+ L +WDTAG ERFR+LT++++R A G ++ +D+T + +F N+ + W ++
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQ 120
Query: 112 -DLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170
+ Y N D + L+GNK D +R V++++ + A +YG + E SA T NVE+ E
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 171 LV 172
L+
Sbjct: 179 LL 180
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 110/182 (60%), Gaps = 16/182 (8%)
Query: 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVAL------ 56
S + ++DYL KLL +GDSGVGK+T L +T + F + T+G+DF+ K V
Sbjct: 2 SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 57 --GGK--KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI- 111
GK K+ L +WDTAG ERFR+LT++++R A G ++ +D+T + +F N+ + W ++
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQ 120
Query: 112 -DLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170
+ Y N D + L+GNK D +R V++++ + A +YG + E SA T NVE+ E
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 171 LV 172
L+
Sbjct: 179 LL 180
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 95/162 (58%), Gaps = 3/162 (1%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+L+GD G GKS+L+L F D F E TIG F + +A+ +K IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
+ +L YYRGA I+V+DVT + +F A W +E+ N + + L GNK D
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQAQG-NPNMVMALAGNKSDLLD 131
Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
R V+ ++ +A+E G F+E SAKT NV++ F E+ ++
Sbjct: 132 ARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 97/166 (58%), Gaps = 3/166 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+ L+GD+GVGKS+++ F D+F+ ++PTIG F K V + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
RFR L YYRG+ I+VYD+T+ +TF+ L + W +E+ + + + GNK D
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGP-PSIVVAIAGNKCDLT 124
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
R V +++ D+A +F+E SAK +N+ + F E+ +I T
Sbjct: 125 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPST 170
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 123 bits (308), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 101/168 (60%), Gaps = 3/168 (1%)
Query: 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAG 70
Y FK++L+G+ VGK++L+L + + F + T+ F K + +GGK++ LAIWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
QERF L YYR + G I+VYD+T D+F + + W KE+ N+ C+ +VGNK+D
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 136
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
E ER VS +E +A G SAK +E+ F +L ++++T
Sbjct: 137 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 184
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 123 bits (308), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 101/168 (60%), Gaps = 3/168 (1%)
Query: 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAG 70
Y FK++L+G+ VGK++L+L + + F + T+ F K + +GGK++ LAIWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
QERF L YYR + G I+VYD+T D+F + + W KE+ N+ C+ +VGNK+D
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKID 122
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
E ER VS +E +A G SAK +E+ F +L ++++T
Sbjct: 123 LEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIET 170
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 95/163 (58%), Gaps = 3/163 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+G+S VGKS+L+L F F E TIG F + V L +K IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
R+ +L YYRGAQ I+VYD+T ++F A W KE+ ++ + + L GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFAR-AKNWVKELQRQAS-PNIVIALSGNKADLA 123
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
++R V +E +A + LF+E SAKT +NV + F + K+
Sbjct: 124 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/167 (39%), Positives = 101/167 (60%), Gaps = 7/167 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+ +G+ VGK++L+ F D+F+ TIG+DF K + L + ++L +WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
RFR+L SY R + ++VYD+T ++F +K ID T + D I +LVGNK D
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQT----SKWIDDVRTERGSDVIIMLVGNKTD 118
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177
+R ++ +EG A+E +F+E SAKT NV+Q F + +L+
Sbjct: 119 LADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 3/163 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+ +G+ VGK++++ F DTF+ TIG+DF K + L ++L +WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
RFR+L SY R + I+VYD+T R +F N W ++I L +D I LVGNK D
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDI-LNERGKDVIIALVGNKTDLG 119
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
R V+ +EG A+EY F E SAK N++ F++ K+
Sbjct: 120 DLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 117 bits (292), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 96/161 (59%), Gaps = 7/161 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+ +G+ VGK++L+ F D+F+ TIG+DF K + L + ++L +WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
RFR+L SY R + ++VYD+T ++F K ID T + D I +LVGNK D
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 122
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171
+R VS +EG A+E +F+E SAK NV+Q F +
Sbjct: 123 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 117 bits (292), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 97/161 (60%), Gaps = 7/161 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+ +G+ VGK++L+ F D+F+ TIG+DF K + L + ++L +WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
RFR+L SY R + ++VYD+T ++F +K ID T + D I +LVGNK D
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQT----SKWIDDVRTERGSDVIIMLVGNKTD 130
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171
+R VS +EG A+E +F+E SAK NV+Q F +
Sbjct: 131 LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 116 bits (291), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 108/201 (53%), Gaps = 11/201 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+ +G+ VGK++L+ F D+F+ TIG+DF K + L + ++L +WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
RFR+L SY R + ++VYD+T ++F K ID T + D I +LVGNK D
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 129
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVK 190
+R VS +EG A+E +F+E SAK NV+Q F + + P + S +
Sbjct: 130 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL---PGMESTQDRSRE 186
Query: 191 KNI-FKESPPQNDASTTGCCS 210
I K PQ + G CS
Sbjct: 187 DMIDIKLEKPQEQPVSEGGCS 207
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 96/161 (59%), Gaps = 7/161 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+ +G+ VGK++L+ F D+F+ TIG+DF K + L + ++L +WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
RFR+L SY R + ++VYD+T ++F K ID T + D I +LVGNK D
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 117
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171
+R VS +EG A+E +F+E SAK NV+Q F +
Sbjct: 118 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 158
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + F F E+ PTI ++ K V + ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+F + Y + QG +VY +T + TF +L D+ + + + T+ D +LVGNK D E
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCDLE 121
Query: 133 SERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVLKI 175
ERVV K++G + AR++ C FLE SAK+++NV + F +LV +I
Sbjct: 122 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 106/171 (61%), Gaps = 7/171 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
LFK++L+GD GVGKS+L+ + ++ F+ +L TIGV+F K + + G + + IWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
ERFR+L + +YRG+ ++ + V +F NL++ W KE Y+ ++ +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 127
Query: 129 VDKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDT 178
+D SER VS +E + R+ G + E SAK NV FEE V ++L T
Sbjct: 128 IDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 177
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 68/171 (39%), Positives = 106/171 (61%), Gaps = 7/171 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
LFK++L+GD GVGKS+L+ + ++ F+ +L TIGV+F K + + G + + IWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
ERFR+L + +YRG+ ++ + V +F NL++ W KE Y+ ++ +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 125
Query: 129 VDKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDT 178
+D SER VS +E + R+ G + E SAK NV FEE V ++L T
Sbjct: 126 IDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 108/173 (62%), Gaps = 12/173 (6%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK-LAIWDTAG 70
+ K++++GDSGVGK++L+ + +D + ++ TIG DF K V + G K+ + +WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK----LLVG 126
QERF++L ++YRGA ++VYDVT +F N+ W E L N + + +++G
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEF-LVHANVNSPETFPFVILG 125
Query: 127 NKVD-KESERVVSKKEGIDFAREYG--CLFLECSAKTRVNVEQCFEELVLKIL 176
NK+D +ES+++VS+K + A+ G LFL SAK +NV+ FEE+ L
Sbjct: 126 NKIDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSAL 177
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + F F E+ PTI ++ K V + ++ L I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+F + Y + QG +VY +T + TF +L D+ + + + T+ D +LVGNK D E
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCDLE 123
Query: 133 SERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVLKI 175
ERVV K++G + AR++ C FLE SAK+++NV + F +LV +I
Sbjct: 124 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 100/169 (59%), Gaps = 9/169 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+K++L GD+ VGKS+ L+ + F E +S T+GVDF++K + + G++ L +WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD-- 130
RFR++ SY+R A G++++YDVT +F N+ + W I+ + ++ +LVGNK D
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIE-DAAHETVPIMLVGNKADIR 146
Query: 131 ----KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
E ++ V G A YG LF E SAK N+ + L ++
Sbjct: 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + F F +E PTI ++ K V + ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+F + Y + QG +VY +T + TF +L D+ + + + T +D +LVGNK D E
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 121
Query: 133 SERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVLKI 175
ERVV K++G + AR++ C FLE SAK+++NV + F +LV +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 68/169 (40%), Positives = 105/169 (62%), Gaps = 7/169 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++L+GD GVGKS+L+ + ++ F+ + TIGV+F + + + G+ + L IWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
ERF++L + +YRGA ++ + V R +F NL + W KE Y+ +D +++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGN-WQKEFIYYADVKDPEHFPFVVLGNK 125
Query: 129 VDKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
VDKE +R V+ +E + E G +LE SAK NV FEE V ++L
Sbjct: 126 VDKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 65/164 (39%), Positives = 100/164 (60%), Gaps = 4/164 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + F F E+ PTI ++ K V + ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+F + Y + QG +VY +T + TF +L D+ + + + T +D +LVGNK D E
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 121
Query: 133 SERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVLKI 175
ERVV K++G + AR++ C FLE SAK+++NV + F +LV +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 113 bits (282), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 107/200 (53%), Gaps = 11/200 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+ +G+ VGK++L+ F D+F+ TIG+DF K + L + ++L +WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
RFR+L SY R + ++VYD+T ++F K ID T + D I +LVGNK D
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 132
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVK 190
+R VS +EG A+E +F+E SAK NV+Q F + + P + S +
Sbjct: 133 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL---PGMESTQDRSRE 189
Query: 191 KNI-FKESPPQNDASTTGCC 209
I K PQ + G C
Sbjct: 190 DMIDIKLEKPQEQPVSEGGC 209
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++GDSGVGK++L+ + + F + TIG DF K V + + + + IWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
ERF++L ++YRGA ++V+DVT +TF L D W E + ++ +D +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
+D E+ +V +K+ + + E SAK +NVEQ F+ + L
Sbjct: 127 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++GDSGVGK++L+ + + F + TIG DF K V + + + + IWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
ERF++L ++YRGA ++V+DVT +TF L D W E + ++ +D +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
+D E+ +V +K+ + + E SAK +NVEQ F+ + L
Sbjct: 127 IDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 105/171 (61%), Gaps = 7/171 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
LFK++L+GD GVGKS+L+ + ++ F+ +L TIGV+F K + + G + + IWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
ERFR+L + +YRG+ ++ + V +F NL++ W KE Y+ ++ +++GNK
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNK 129
Query: 129 VDKESERVVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCFEELVLKILDT 178
D + ER VS +E + ++ G + E SAK NV FEE V +IL T
Sbjct: 130 TDIK-ERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILAT 179
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 95/161 (59%), Gaps = 7/161 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+ +G+ VGK++L+ F D+F+ TIG+DF K + L + ++L +WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
RFR+L SY R + ++VYD+T ++F K ID T + D I +LVGNK D
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQT----TKWIDDVRTERGSDVIIMLVGNKTD 122
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171
+R VS +EG A+E +F+E SAK NV+Q F +
Sbjct: 123 LADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/168 (36%), Positives = 100/168 (59%), Gaps = 5/168 (2%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++GDSGVGK++L+ + + F + TIG DF K V + + + + IWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
ERF++L ++YRGA ++V+DVT +TF L D W E + ++ +D +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
+D E+ +V +K+ + + E SAK +NVEQ F+ + L
Sbjct: 127 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/168 (35%), Positives = 99/168 (58%), Gaps = 5/168 (2%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++GDSGVGK++L+ + + F + TIG DF K V + + + + IWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNK 128
ERF++L ++YRGA ++V+DVT +TF L D W E + ++ +D +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNK 126
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
+D E+ +V +K+ + + E SAK +NVEQ F+ + L
Sbjct: 127 IDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 91/168 (54%), Gaps = 6/168 (3%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
+FK+++IGDS VGK+ L F + F + + TIGVDF+ + V + G+++K+ +WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 72 ERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
ERFR ++ YYR ++ VYD T +F +L W +E + D ++LVGNK D
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVGNKCD 147
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKT---RVNVEQCFEELVLKI 175
S V FA + E SAK +VE F L K+
Sbjct: 148 LRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 6/168 (3%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
+FK+++IGDS VGK+ L F + F + + TIGVDF+ + V + G+++K+ +WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 72 ERFR-TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
ERFR ++ YYR ++ VYD+T +F +L W +E + D ++LVGNK D
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCD 138
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKT---RVNVEQCFEELVLKI 175
S V FA + E SAK +VE F L K+
Sbjct: 139 LRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 99/165 (60%), Gaps = 4/165 (2%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++G GVGKS L L F D F E+ PT ++ K V L G+++++ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 65
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV-GNKVD 130
E + + +Y+R +G ++V+ +T ++FT A+ + ++I +D I LLV GNK D
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAE-FREQILRVKAEEDKIPLLVVGNKSD 124
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
E R V +E A E+G ++E SAKTR NV++ F +L+ +I
Sbjct: 125 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++G GVGKS L L F D F E+ PT ++ K V L G+++++ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 76
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
E + + +Y+R +G + V+ +T ++F AD + ++I +++ LLVGNK D
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 135
Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
E +R VS +E + A ++ ++E SAKTR NV++ F +L+ +I
Sbjct: 136 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++G GVGKS L L F D F E+ PT ++ K V L G+++++ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 64
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
E + + +Y+R +G + V+ +T ++F AD + ++I +++ LLVGNK D
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 123
Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
E +R VS +E + A ++ ++E SAKTR NV++ F +L+ +I
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 99/165 (60%), Gaps = 4/165 (2%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++G GVGKS L L F D F E+ PT ++ K V L G+++++ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 61
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV-GNKVD 130
E + + +Y+R +G ++V+ +T ++FT A+ + ++I +D I LLV GNK D
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAE-FREQILRVKAEEDKIPLLVVGNKSD 120
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
E R V +E A E+G ++E SAKTR NV++ F +L+ +I
Sbjct: 121 LEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++G GVGKS L L F D F E+ PT ++ K V L G+++++ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 72
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
E + + +Y+R +G + V+ +T ++F AD + ++I +++ LLVGNK D
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 131
Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
E +R VS +E + A ++ ++E SAKTR NV++ F +L+ +I
Sbjct: 132 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++G GVGKS L L F D F E+ PT ++ K V L G+++++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQ 62
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
E + + +Y+R +G + V+ +T ++F AD + ++I +++ LLVGNK D
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 121
Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
E +R VS +E + A ++ ++E SAKTR NV++ F +L+ +I
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 99/164 (60%), Gaps = 3/164 (1%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K++++G GVGKS L L F D F E+ PT ++ K V L G+++++ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGL 64
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
E + + +Y+R +G + V+ +T ++F AD + ++I +++ LLVGNK D
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDL 123
Query: 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
E +R VS +E + A ++ ++E SAKTR NV++ F +L+ +I
Sbjct: 124 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 100 bits (248), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 10/180 (5%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ PT+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
+L GNKVD + +V K + I F R+ + + SAK+ N E+ F L K++ P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 99/180 (55%), Gaps = 10/180 (5%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ PT+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
+L GNKVD + +V K + I F R+ + + SAK+ N E+ F L K++ P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/182 (35%), Positives = 100/182 (54%), Gaps = 10/182 (5%)
Query: 3 SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGK 59
+S +Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G
Sbjct: 5 ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-- 62
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
+K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCEN 119
Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTP 179
+L GNKVD + +V K + I F R+ + + SAK+ N E+ F L K++ P
Sbjct: 120 IPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177
Query: 180 SL 181
+L
Sbjct: 178 NL 179
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 101/182 (55%), Gaps = 10/182 (5%)
Query: 3 SSTSQQEFDYLFKLLLIGDSGVGKSTLL-LSFTSDTFEELSPTIGVDFK--IKHVALGGK 59
+S +Q E FKL+L+GD G GK+T + T ++ ++ T+GV+ + H G
Sbjct: 5 ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRG-- 62
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
+K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 63 PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCEN 119
Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTP 179
+L GNKVD + +V K + I F R+ + + SAK+ N E+ F L K++ P
Sbjct: 120 IPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177
Query: 180 SL 181
+L
Sbjct: 178 NL 179
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I ++D +LVGNK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP 122
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
S R V K+ D AR YG F+E SAKTR V+ F LV +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I ++D +LVGNK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
S R V K+ D AR YG F+E SAKTR V+ F LV +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 69
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 127
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A G ++ECSAKT+ V + FE
Sbjct: 128 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 176
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A G ++ECSAKT+ V + FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 124
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A G ++ECSAKT+ V + FE
Sbjct: 125 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
+L GNKVD + +V K + I F R+ + + SAK+ N E+ F L K++ P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
+L GNKVD + +V K + I F R+ + + SAK+ N E+ F L K++ P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A G ++ECSAKT+ V + FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
+L GNKVD + +V K + I F R+ + + SAK+ N E+ F L K++ P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
+L GNKVD + +V K + I F R+ + + SAK+ N E+ F L K++ P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 124
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A G ++ECSAKT+ V + FE
Sbjct: 125 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A G ++ECSAKT+ V + FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A G ++ECSAKT+ V + FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 126
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A G ++ECSAKT+ V + FE
Sbjct: 127 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAGQE+F L YY AQ I+ +DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
+L GNKVD + +V K + I F R+ + + SAK+ N E+ F L K++ P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 95/171 (55%), Gaps = 10/171 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKMKLAIWDTAG 70
FKL+L+GD G GK+T + + FE+ T+GV+ + H G +K +WDTAG
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PIKFNVWDTAG 61
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
QE+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 62 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 118
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
+ +V K + I F R+ + + SAK+ N E+ F L K++ P+L
Sbjct: 119 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 10/180 (5%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAGQE++ L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
+L GNKVD + +V K + I F R+ + + SAK+ N E+ F L K++ P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ I + + GK+++LA+WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPII--LVGNKKDLRQ 143
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A +LECSAKT+ V + FE
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 98/183 (53%), Gaps = 10/183 (5%)
Query: 2 ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGG 58
S +Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G
Sbjct: 1 GSMAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG- 59
Query: 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ 118
+K +WDTAG E+F L YY AQ I+++DVT R T+ N+ + W + DL +
Sbjct: 60 -PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCE 115
Query: 119 DCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
+ +L GNKVD + +V K + I F R+ + + SAK+ N E+ F L K++
Sbjct: 116 NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 173
Query: 179 PSL 181
P+L
Sbjct: 174 PNL 176
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 5/167 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQ 71
K++++GD GK++L F +TF ++ TIG+DF ++ + L G + L IWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIW--AKEIDLYSTNQDCIKLLVGNKV 129
+ Y GAQG+++VYD+T +F NL D + K++ S Q + LVGNK+
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVA-LVGNKI 125
Query: 130 DKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
D E R + ++ + F +E G SAKT +V CF+++ +IL
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ I + + GK+++LA+WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRQ 143
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A +LECSAKT+ V + FE
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 97/180 (53%), Gaps = 10/180 (5%)
Query: 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKM 61
+Q E FKL+L+GD G GK+T + + FE+ T+GV+ + H G +
Sbjct: 2 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PI 59
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
K +WDTAG E+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 KFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 116
Query: 122 KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
+L GNKVD + +V K + I F R+ + + SAK+ N E+ F L K++ P+L
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ + D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 121
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A G ++ECSAKT+ V + FE
Sbjct: 122 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ + D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A G ++ECSAKT+ V + FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ + D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 121
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A G ++ECSAKT+ V + FE
Sbjct: 122 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+GD G GK+T + + FE+ TIGV+ ++K +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD +
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVK 129
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
+V K + I F R+ + + SAK+ N E+ F L K+ P L
Sbjct: 130 ERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 176
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ + D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A G ++ECSAKT+ V + FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ + D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A G ++ECSAKT+ V + FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+GD G GK+T + + FE+ TIGV+ ++K +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD +
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVK 122
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
+V K + I F R+ + + SAK+ N E+ F L K+ P L
Sbjct: 123 ERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 169
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 90/169 (53%), Gaps = 6/169 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
FKL+L+GD G GK+T + + FE+ TIGV+ ++K +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD +
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDVK 121
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
+V K + I F R+ + + SAK+ N E+ F L K+ P L
Sbjct: 122 ERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 168
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 18/191 (9%)
Query: 3 SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKM 61
SS + + K +++GD VGK+ LL+S+ +D F EE PT+ D V +GGK+
Sbjct: 8 SSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQY 66
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI 121
L ++DTAGQE + L Y ++ + V +F N+ + W E+ Y+ N
Sbjct: 67 LLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP-- 124
Query: 122 KLLVGNKVDKE------------SERVVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCF 168
LL+G ++D E+ + ++G A+E G C ++ECSA T+ ++ F
Sbjct: 125 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184
Query: 169 EELVLKILDTP 179
+E ++ IL TP
Sbjct: 185 DEAIIAIL-TP 194
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K++++G+ VGKS+++ + F ++ TIGVDF + + + + ++L +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
F +T +YYRGAQ ++V+ T R++F ++ W +++ + D LV NK+D
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKV--VAEVGDIPTALVQNKIDLL 122
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
+ + +E A+ F S K +NV + F+ L K L
Sbjct: 123 DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 94/171 (54%), Gaps = 10/171 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK--IKHVALGGKKMKLAIWDTAG 70
FKL+L+GD G GK+T + + FE+ T+GV+ + H G +K +WDTAG
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--PIKFNVWDTAG 64
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
E+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 65 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 121
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181
+ +V K + I F R+ + + SAK+ N E+ F L K++ P+L
Sbjct: 122 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 170
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 97/184 (52%), Gaps = 13/184 (7%)
Query: 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLA 64
S K + +GD VGK+ +L+ +TS+ F + PT+ +F +VA+ G+ + L
Sbjct: 2 SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLG 60
Query: 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
+WDTAGQE + L YRGA ++ + + + ++ N+ W E+ ++ N + L
Sbjct: 61 LWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV--L 118
Query: 125 VGNKVDKESER--------VVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCFEELVLKI 175
VG K+D ++ V++ +G + ++ G ++ECS+KT+ NV+ F+ + +
Sbjct: 119 VGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVV 178
Query: 176 LDTP 179
L P
Sbjct: 179 LQPP 182
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 86/169 (50%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F + PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V EG D A G ++ECSAKT+ V + FE
Sbjct: 124 DEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ + D F E+ PT+ ++ I + + GK+++LA+WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRQ 123
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A +LECSAKT+ V + FE
Sbjct: 124 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 94/176 (53%), Gaps = 15/176 (8%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
K + +GD VGK+ +L+S+TS+TF + PT+ +F +V + G + L +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFS-ANVVVDGNTVNLGLWDTAGQ 64
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
E + L YRGA I+ + + + ++ N+A W E+ Y+ I LVG K+D
Sbjct: 65 EDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDL 122
Query: 132 ESER----------VVSKKEGIDFAREYGC-LFLECSAKTRVNVEQCFEELVLKIL 176
++ ++ +G + + G +++ECS+KT+ NV+ F+ + +L
Sbjct: 123 RDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ + D F E+ PT+ ++ + + + GK+++LA+WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y I+M + + D+ N+ + W E+ + N I LVGNK D
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 126
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
K + V +EG D A G ++ECSAKT+ V + FE
Sbjct: 127 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 90/169 (53%), Gaps = 15/169 (8%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K++L+GD G GK++LL+ F F E +PT+ + + ++ + GK + L IWDTAGQ+
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-----------K 122
+ L +Y A +++ +DVT ++F N+ + W E++ + I K
Sbjct: 95 YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDK 154
Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEE 170
LV NK+ + V+ G + AR G + +LECSA+ NV F+E
Sbjct: 155 SLV-NKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/179 (34%), Positives = 91/179 (50%), Gaps = 4/179 (2%)
Query: 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIG-VDFKIKHVALGGKKMKL 63
S + + +K+ LIGD GVGK+T + FE+ + T+G V+ + + G +K
Sbjct: 4 SMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKF 63
Query: 64 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL 123
+WDTAGQE+ L YY GA G I+ +DVT R T NLA W KE N+ I +
Sbjct: 64 NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPI-V 121
Query: 124 LVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL 182
+ NK+D ++ + +SKK ++ + + E SAKT N F L P L+
Sbjct: 122 VCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLI 180
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 88/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ F+ D F E+ PT+ ++ + + + GK+++LA+WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 85
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
+ L Y I+M + V D+ N+ + W E+ + N I LV NK D S
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPII--LVANKKDLRS 143
Query: 134 ERVVS------KKEGI--DFAREYGCL-----FLECSAKTRVNVEQCFE 169
+ V K+E + D R +LECSAKT+ V + FE
Sbjct: 144 DEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFE 192
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 79/148 (53%), Gaps = 3/148 (2%)
Query: 26 KSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84
KS L + F F + PTI D K + + +L I DTAGQE F + Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID 144
+G ++V+ VT R +F + + ++I + +L+GNK D + +R V+++EG
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYK-FQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQ 135
Query: 145 FAREYGCLFLECSAKTRVNVEQCFEELV 172
AR+ ++E SAK R+NV+Q F ELV
Sbjct: 136 LARQLKVTYMEASAKIRMNVDQAFHELV 163
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 93/176 (52%), Gaps = 15/176 (8%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
K + +GD VGK+ LL+S+TS+TF + PT+ +F +V + G + L +WDTAGQ
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQ 66
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
E + L YRGA I+ + + + ++ N++ W E+ Y+ + LVG K+D
Sbjct: 67 EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV--LVGTKLDL 124
Query: 132 ESER----------VVSKKEGIDFAREYGC-LFLECSAKTRVNVEQCFEELVLKIL 176
++ ++ +G + + G ++ECS+K++ NV+ F+ + +L
Sbjct: 125 RDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 3/151 (1%)
Query: 26 KSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84
KS L + F F + PTI D K ++ G +L I DTAGQE F + Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID 144
G ++V+ + R +F + ++ + + + + D +LVGNK D ES+R V + E
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD-DFPVVLVGNKADLESQRQVPRSEASA 139
Query: 145 FAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
F + + E SAK R+NV++ FE+LV +
Sbjct: 140 FGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 43/200 (21%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGK------------- 59
+K +L+G+S VGKS+++L T DTF E + TIG F V L
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 60 ------------------------KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT 95
+K IWDTAGQER+ ++ YYRGA I+V+D++
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 96 RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLE 155
+T + A W ++ + S + I +LV NK+DK + V E +A++ LF++
Sbjct: 128 NSNTL-DRAKTWVNQLKISS---NYIIILVANKIDKNKFQ-VDILEVQKYAQDNNLLFIQ 182
Query: 156 CSAKTRVNVEQCFEELVLKI 175
SAKT N++ F L +I
Sbjct: 183 TSAKTGTNIKNIFYMLAEEI 202
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 3/174 (1%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K+ ++G VGKS+L + F F + PTI F K + + G++ L + DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
+ +Y G I+VY VT +F + I K +D+ Q I +LVGNK D
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHM 125
Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSS 187
ERV+S +EG A + FLE SAK F ++L+ S+G S
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDGACSQGKS 179
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SL 181
+
Sbjct: 181 PV 182
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SL 181
+
Sbjct: 181 PV 182
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 90/172 (52%), Gaps = 15/172 (8%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
K + +GD VGK+ +L+S+T +TF + PT+ +F +V + G + L +WDTAGQ
Sbjct: 6 FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFS-ANVVVDGSTVNLGLWDTAGQ 64
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
E + L YRGA ++ + + + ++ N+ W E+ Y+ + LVG K+D
Sbjct: 65 EDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIV--LVGTKLDL 122
Query: 132 ESER----------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELV 172
++ ++ +G + + G + +LECS+KT+ NV+ F+ +
Sbjct: 123 RDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAI 174
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 122
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L P
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182
Query: 180 SL 181
+
Sbjct: 183 PV 184
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 124
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L P
Sbjct: 125 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 184
Query: 180 SL 181
+
Sbjct: 185 PV 186
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K+ ++G VGKS+L + F F + PTI F K + + G++ L + DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 66
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
+ +Y G I+VY VT +F + I K +D+ Q I +LVGNK D
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHM 125
Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLK 174
ERV+S +EG A + FLE SAK F ++L+
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SL 181
+
Sbjct: 181 PV 182
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 93/182 (51%), Gaps = 17/182 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SL 181
+
Sbjct: 181 PV 182
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 5 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I ++D +LVGNK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
S R V K+ D AR YG F+E SAKTR V+ F LV +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 89/163 (54%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 5 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I ++D +LVGNK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
S R V K+ D AR YG F+E SAKTR V+ F LV +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K+ ++G VGKS+L + F F + PTI F K + + G++ L + DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 61
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
+ +Y G I+VY VT +F + I K +D+ Q I +LVGNK D
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHM 120
Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLK 174
ERV+S +EG A + FLE SAK F ++L+
Sbjct: 121 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 161
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K+ ++G VGKS+L + F F + PTI F K + + G++ L + DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFT-KLITVNGQEYHLQLVDTAGQDE 64
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
+ +Y G I+VY VT +F + I K +D+ Q I +LVGNK D
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKDLHM 123
Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLK 174
ERV+S +EG A + FLE SAK F ++L+
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 99/198 (50%), Gaps = 19/198 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVKKN 192
+ R V ++ D AR YG ++E SAKTR VE F LV +I +
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR-------------QHK 167
Query: 193 IFKESPPQNDASTTGCCS 210
+ K +PP D S GC S
Sbjct: 168 LRKLNPP--DESGPGCMS 183
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 17/177 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 17/177 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + + LLVG K+D
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDLR 121
Query: 133 S-----ERVVSKK-------EGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
ER+ KK +G+ ARE G + +LECSA T+ ++ F+E + +L
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 17/177 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + + LLVG K+D
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDLR 121
Query: 133 S-----ERVVSKK-------EGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
ER+ KK +G+ ARE G + +LECSA T+ ++ F+E + +L
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 17/177 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ D +V + GK + L +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 127
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L
Sbjct: 128 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 17/177 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 81
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 139
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L
Sbjct: 140 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 196
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 17/177 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 23/196 (11%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGK 59
M SS K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+
Sbjct: 1 MGSSHHHHHHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGE 59
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
L ++DTAGQE + L Y ++ + V +F N+ + W EI
Sbjct: 60 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THH 114
Query: 120 CIK---LLVGNKVD------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVN 163
C K LLVG ++D K ++ ++ + AR+ + ++ECSA T+
Sbjct: 115 CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKG 174
Query: 164 VEQCFEELVLKILDTP 179
++ F+E +L L+ P
Sbjct: 175 LKNVFDEAILAALEPP 190
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ D +V + GK + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 147
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 92/177 (51%), Gaps = 17/177 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + + LLVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDLR 120
Query: 133 S-----ERVVSKK-------EGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
ER+ KK +G+ ARE G + +LECSA T+ ++ F+E + +L
Sbjct: 121 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 91/177 (51%), Gaps = 17/177 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 72
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 130
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L
Sbjct: 131 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 187
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG E
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 80
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I ++D +LVGNK D
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP 139
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
S R V K+ D AR YG F+E SAKTR V+ F LV +I
Sbjct: 140 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 90/163 (55%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 22 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 80
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ +++ ++I + D +LVGNK D
Sbjct: 81 EYSAMRDQYMRTGEGFLCVFAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLP 139
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V K+ + A+ YG F+E SAKTR VE F LV +I
Sbjct: 140 T-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 9 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 125
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 67
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 125
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SL 181
+
Sbjct: 181 PV 182
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 122 A-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 119
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 120 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
Query: 177 DTP 179
+ P
Sbjct: 180 EPP 182
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDTP 179
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 180 SL 181
+
Sbjct: 181 PV 182
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 124
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 125 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
Query: 177 DTP 179
+ P
Sbjct: 185 EPP 187
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 120
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 121 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
Query: 177 DTP 179
+ P
Sbjct: 181 EPP 183
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 DTP 179
+ P
Sbjct: 178 EPP 180
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 2/160 (1%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+++ + G GVGKS+L+L F TF E PT+ ++ + ++ L I DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+F + I+VY +T R + L I+ + ++ + +LVGNK D+
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
R V E AR + C F+E SAK NV++ F+EL+
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 162
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 120
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 121 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 180
Query: 177 DTP 179
+ P
Sbjct: 181 EPP 183
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 DTP 179
+ P
Sbjct: 178 EPP 180
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 11 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 69
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 70 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 127
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 128 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 63
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 118
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 119 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 178
Query: 177 DTP 179
+ P
Sbjct: 179 EPP 181
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 124
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 125 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 184
Query: 177 DTP 179
+ P
Sbjct: 185 EPP 187
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 DTP 179
+ P
Sbjct: 178 EPP 180
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 DTP 179
+ P
Sbjct: 178 EPP 180
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 89/173 (51%), Gaps = 17/173 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELV 172
++ ++ +G+ A+E G + +LECSA T+ ++ F+E +
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F E+ PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 92/183 (50%), Gaps = 23/183 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 DTP 179
+ P
Sbjct: 178 EPP 180
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGEICLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGN+ D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNRCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E P+I ++ K V + G+ L I DTAGQE
Sbjct: 10 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 68
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 69 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA 127
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 128 A-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVA-LGGKKMKLAIWDTAGQ 71
K++++GD VGK+ LLL+F+ PT+ +F HV ++ L +WDTAGQ
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS--HVMKYKNEEFILHLWDTAGQ 81
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD- 130
E + L Y + +++ + V R +F N++ W EI Y + LVG KVD
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV--LVGLKVDL 139
Query: 131 -KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELV 172
K+ V+K+EG D ++ GC+ ++E S+ ++ + + FE+ V
Sbjct: 140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 183
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGK+ L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ E PT+ D +V + GK + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 147
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E P+I ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 122 A-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 4/160 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172
+ R V ++ D AR YG ++E SAKTR VE F LV
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 88/152 (57%), Gaps = 3/152 (1%)
Query: 25 GKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR 83
GKS L + F + TF E+ PTI DF K + + L I DTAG E+F ++ Y +
Sbjct: 15 GKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIK 73
Query: 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGI 143
QG I+VY + + +F ++ + + I + + + +LVGNKVD ESER VS EG
Sbjct: 74 NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPV-ILVGNKVDLESEREVSSSEGR 132
Query: 144 DFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
A E+GC F+E SAK++ V++ F E+V ++
Sbjct: 133 ALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 17/181 (9%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGL 213
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
E + L Y ++ + + +F ++ W E+ + N I LVG K+D
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDL 271
Query: 132 ESER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDT 178
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Query: 179 P 179
P
Sbjct: 332 P 332
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVA-LGGKKMKLAIWDTAGQ 71
K++++GD VGK+ LLL+F+ PT+ +F HV ++ L +WDTAGQ
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS--HVMKYKNEEFILHLWDTAGQ 80
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD- 130
E + L Y + +++ + V R +F N++ W EI Y + LVG KVD
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTV--LVGLKVDL 138
Query: 131 -KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELV 172
K+ V+K+EG D ++ GC+ ++E S+ ++ + + FE+ V
Sbjct: 139 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 182
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKXDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 17/181 (9%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGL 213
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
E + L Y ++ + + +F ++ W E+ + N I LVG K+D
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDL 271
Query: 132 ESER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDT 178
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Query: 179 P 179
P
Sbjct: 332 P 332
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DT GQE
Sbjct: 4 YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 123
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L
Sbjct: 124 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 180
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGHE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 92/181 (50%), Gaps = 17/181 (9%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71
L K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGL 213
Query: 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
E + L Y ++ + + +F ++ W E+ + N I LVG K+D
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDL 271
Query: 132 ESER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKILDT 178
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L
Sbjct: 272 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 331
Query: 179 P 179
P
Sbjct: 332 P 332
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG+E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGKE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTA QE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKXDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DT GQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTGGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F ++ PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLE 89
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + +F N+ W E+ + N I LVG K+D
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDLR 147
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
++ ++ +G+ A+E G + +LECSA T+ ++ F+E + +L
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 89/169 (52%), Gaps = 17/169 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+++GD GK+ LL+ + F E+ PT+ ++ + V + G++++LA+WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ L Y + +++ + + D+ N+ + W E+ + Q +LVG KVD
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC--QGVPIILVGCKVDLRN 128
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFE 169
+E ++ V+ +EG A + G + ECSAKT V + FE
Sbjct: 129 DPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFE 177
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETXLLDILDTAGGE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 D 177
+
Sbjct: 178 E 178
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 119
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 120 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 179
Query: 177 D 177
+
Sbjct: 180 E 180
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG E
Sbjct: 9 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 67
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 68 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 125
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 126 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 121
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 122 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181
Query: 177 D 177
+
Sbjct: 182 E 182
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 36/201 (17%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + GK + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQE 64
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADI-------------------WAKEIDL 113
+ L Y G D+T R +AD+ W E+
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 114 YSTNQDCIKLLVGNKVDKESER------------VVSKKEGIDFAREYGCL-FLECSAKT 160
+ N I LVG K+D ++ ++ +G+ A+E G + +LECSA T
Sbjct: 125 HCPNTPII--LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 182
Query: 161 RVNVEQCFEELVLKILDTPSL 181
+ ++ F+E + +L P +
Sbjct: 183 QRGLKTVFDEAIRAVLCPPPV 203
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGGE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 23/183 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 DTP 179
+ P
Sbjct: 178 EPP 180
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 D 177
+
Sbjct: 178 E 178
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
Query: 177 D 177
+
Sbjct: 178 E 178
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 5/163 (3%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL + G +GVGKS L++ F + F E PT+ ++ + + + + I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQED 88
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
+ R +G ++VYD+T R +F + + +D ++ +LVGNK D +
Sbjct: 89 -TIQREGHMRWGEGFVLVYDITDRGSFEEVLPL-KNILDEIKKPKNVTLILVGNKADLDH 146
Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKT-RVNVEQCFEELVLKI 175
R VS +EG A E C F ECSA T N+ + F EL ++
Sbjct: 147 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGLE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGVE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 23/183 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 66
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 121
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 122 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 181
Query: 177 DTP 179
+ P
Sbjct: 182 EPP 184
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+KL+++G GVGKS L + + F +E PTI ++ K V + G+ L I DTAG E
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGIE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ + Y R +G + V+ + +F ++ + ++I + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDL- 120
Query: 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+ R V ++ D AR YG ++E SAKTR VE F LV +I
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 90/180 (50%), Gaps = 23/180 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAAL 177
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 93/174 (53%), Gaps = 4/174 (2%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
MA+S E +KL+++GD GVGKS L + F F E PTI D +KH + +
Sbjct: 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIE-DSYLKHTEIDNQ 64
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
L + DTAGQE F + Y R G ++VY VT + +F ++ D + + I +
Sbjct: 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRES 123
Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK-TRVNVEQCFEELV 172
+LV NKVD R V++ +G + A +Y ++E SAK +NV++ F +LV
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 94/174 (54%), Gaps = 4/174 (2%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
MA+S E +KL+++GD GVGKS L + F F +E PTI ++ KH + +
Sbjct: 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYR-KHTEIDNQ 64
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
L + DTAGQE F + Y R G ++VY VT + +F ++ D + + I +
Sbjct: 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRES 123
Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK-TRVNVEQCFEELV 172
+LV NKVD R V++ +G + A +Y ++E SAK +NV++ F +LV
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 23/181 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ + V +GG+ L + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLRDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 D 177
+
Sbjct: 178 E 178
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 23/181 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E P + ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 D 177
+
Sbjct: 178 E 178
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 94/174 (54%), Gaps = 4/174 (2%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
MA+S E +KL+++GD GVGKS L + F F ++ PTI D +KH + +
Sbjct: 6 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQ 64
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
L + DTAGQE F + Y R G ++VY VT + +F ++ D + + I +
Sbjct: 65 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRES 123
Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK-TRVNVEQCFEELV 172
+LV NKVD R V++ +G + A +Y ++E SAK +NV++ F +LV
Sbjct: 124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 177
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 3/162 (1%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K++++G VGK++L F F E PT+ + K V LG + L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYS-KIVTLGKDEFHLHLVDTAGQDE 84
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
+ L S+ G G ++VY VT +F + ++ K + + + + +LVGNK D
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV-VLVGNKADLSP 143
Query: 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
ER V EG A +G F+E SA+ + F +++ +I
Sbjct: 144 EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 90/181 (49%), Gaps = 23/181 (12%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ E PT+ ++ + V +GG+ L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKV 129
+ L Y ++ + V +F N+ + W EI C K LLVG ++
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQI 117
Query: 130 D------------KESERVVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
D K ++ ++ + AR+ + ++ECSA T+ ++ F+E +L L
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAAL 177
Query: 177 D 177
+
Sbjct: 178 E 178
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/174 (34%), Positives = 93/174 (53%), Gaps = 4/174 (2%)
Query: 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK 59
MA+S E +KL+++GD GVGKS L + F F + PTI D +KH + +
Sbjct: 1 MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQ 59
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD 119
L + DTAGQE F + Y R G ++VY VT + +F ++ D + + I +
Sbjct: 60 WAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRES 118
Query: 120 CIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK-TRVNVEQCFEELV 172
+LV NKVD R V++ +G + A +Y ++E SAK +NV++ F +LV
Sbjct: 119 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 172
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + K + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 62
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + ++ N+ W E+ + + I LVG K+D
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLDLR 120
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
++ ++ +G+ A+E + +LECSA T+ ++ F+E + +L
Sbjct: 121 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + K + L +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 68
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + ++ N+ W E+ + + I LVG K+D
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLDLR 126
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
++ ++ +G+ A+E + +LECSA T+ ++ F+E + +L
Sbjct: 127 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 183
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 89/177 (50%), Gaps = 17/177 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K +++GD VGK+ LL+S+T++ F E PT+ ++ +V + K + L +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDSKPVNLGLWDTAGQE 69
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
+ L Y ++ + + ++ N+ W E+ + + I LVG K+D
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLDLR 127
Query: 133 SER------------VVSKKEGIDFAREYGCL-FLECSAKTRVNVEQCFEELVLKIL 176
++ ++ +G+ A+E + +LECSA T+ ++ F+E + +L
Sbjct: 128 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 184
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Query: 26 KSTLLLSFTSDTFEELS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84
KS+L+L F TF + PTI ++ + ++ L I DT G +F +
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID 144
I+V+ VT + + L I+ + + + +D +LVGNK D E++R V +E
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQA 138
Query: 145 FAREYGCLFLECSAKTRVNVEQCFEELV 172
A+E+ C F+E SAK NV++ F+EL+
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELFQELL 166
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 17/173 (9%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K +L+GD VGK++L++S+T++ + E PT +F V++ G+ ++L + DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDE 80
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK----- 128
F L Y ++ + V +F N+++ W EI + I LVG +
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPII--LVGTQSDLRE 138
Query: 129 -------VDKESERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEELVL 173
+DK E+ V ++ A E ++ECSA T+ N+++ F+ ++
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIV 191
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 7/161 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
L++++L+GD GVGK++L F +L +G D + + + G+ L + DT E
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63
Query: 73 RFRTLTS--SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ-DCIKL-LVGNK 128
+ S S +G ++VY + R +F + +++ I L T+Q D + + LVGNK
Sbjct: 64 KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASEL---RIQLRRTHQADHVPIILVGNK 120
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169
D R VS +EG A + C F+E SA + NV + FE
Sbjct: 121 ADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K++++GDS GK+ LL F D F E PT+ ++ + ++++L++WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPY 83
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ + Y + +++ +D++R +T ++ W EI + N LLVG K D
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 141
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSA 158
+ VS +G + A++ G ++ECSA
Sbjct: 142 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K++++GDS GK+ LL F D F E PT+ ++ + ++++L++WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTSGSPY 88
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ + Y + +++ +D++R +T ++ W EI + N LLVG K D
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 146
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSA 158
+ VS +G + A++ G ++ECSA
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
K++++GDS GK+ LL F D F E PT+ ++ + ++++L++WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTSGSPY 67
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ + Y + +++ +D++R +T ++ W EI + N LLVG K D
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 125
Query: 131 ---------KESERVVSKKEGIDFAREYGCL-FLECSA 158
+ VS +G + A++ G ++ECSA
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 12/169 (7%)
Query: 14 FKLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKK---MKLAIWDT 68
++++LIG+ GVGKSTL + + D+ + +G D + + + G+ + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVG 126
G+ + L + ++VY +T R +F +++ I L Q D +LVG
Sbjct: 67 KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
NK D R VS EG A + C F+E SA + NV++ FE +V ++
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Query: 3 SSTSQQEFDYLFKLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKK 60
S S + + ++++LIG+ GVGKSTL + + D+ + +G D + + + G+
Sbjct: 27 SVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES 86
Query: 61 ---MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN 117
+ L +W+ G+ + L + ++VY +T R +F +++ I L
Sbjct: 87 ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRAR 141
Query: 118 Q--DCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
Q D +LVGNK D R VS EG A + C F+E SA + NV++ FE +V ++
Sbjct: 142 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
++K+LL+G GVGKS L F + G + + + + G++ L ++D Q+
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
R L ++VY VT + +F +++ + L Q D +LVGNK D
Sbjct: 66 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 122
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
R VS EG A + C F+E SA NV+ FE +V +I
Sbjct: 123 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 83/173 (47%), Gaps = 7/173 (4%)
Query: 7 QQEFDYLFKLLLIGDSGVGKSTLLLSF---TSDTFEELSPTIGVDFKIKHVALGGKKMKL 63
Q + D +FK++L+G+SGVGKSTL +F D+ E P D + + + +++ L
Sbjct: 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE--PENPEDTYERRIMVDKEEVTL 74
Query: 64 AIWDTAGQ-ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK 122
++D Q + L + ++V+ VT R +F+ + + + + + D
Sbjct: 75 VVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPV 133
Query: 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
+LVGNK D R VS +EG A C +E SA N + FE V +I
Sbjct: 134 ILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
++K+LL+G GVGKS L F + G + + + + G++ L ++D Q+
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 65
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
R L ++VY VT + +F +++ + L Q D +LVGNK D
Sbjct: 66 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 122
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
R VS EG A + C F+E SA NV+ FE +V +I
Sbjct: 123 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 6/165 (3%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
++K+LL+G GVGKS L F + G + + + + G++ L ++D Q+
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQD 60
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVGNKVD 130
R L ++VY VT + +F +++ + L Q D +LVGNK D
Sbjct: 61 GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSD 117
Query: 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
R VS EG A + C F+E SA NV+ FE +V +I
Sbjct: 118 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 12/169 (7%)
Query: 14 FKLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKK---MKLAIWDT 68
++++LIG+ GVGKSTL + + D+ + +G D + + + G+ + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVG 126
G+ + L + ++VY +T R +F +++ I L Q D +LVG
Sbjct: 67 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
NK D R VS EG A + C F+E SA + NV++ FE +V ++
Sbjct: 122 NKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PTIG F ++ V K + +WD GQ+R
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNICFTVWDVGGQDR 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
R L Y++ QG+I V D R+ +AD K + L +D + LL NK D +
Sbjct: 74 IRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKML-LVDELRDAVLLLFANKQDLPN 132
Query: 134 ERVVSK 139
+S+
Sbjct: 133 AMAISE 138
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 14 FKLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKK---MKLAIWDT 68
++++LIG+ GVGKSTL + + D+ + +G D + + + G+ + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ--DCIKLLVG 126
G+ + L + ++VY +T R +F +++ I L Q D +LVG
Sbjct: 67 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
NK D R VS EG A + F+E SA + NV++ FE +V ++
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 15/165 (9%)
Query: 16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
L ++G G GKS L + F + F E P + + + + + + L + DTA +
Sbjct: 24 LAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEET-VDHQPVHLRVMDTADLDTP 82
Query: 75 RTLTSSYYRGAQGIIMVYDV------TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
R Y A ++VY V ++ L + AKE T + LL+GNK
Sbjct: 83 RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKE-----TQRSIPALLLGNK 136
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRV-NVEQCFEELV 172
+D R V+K EG+ A +GCLF E SA +V+ F E V
Sbjct: 137 LDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 18/187 (9%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+L+GD GK+ +L D + E PT+ ++ + ++++L++WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ + Y + +++ +D++R +T + W EI Y + LL+G K D
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRT 145
Query: 131 ---------KESERVVSKKEGIDFAREYGC-LFLECSAKT-RVNVEQCFEELVLKILDTP 179
+ + +S ++G A++ G ++LE SA T ++ F + L+ P
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205
Query: 180 SLLSEGS 186
S L + S
Sbjct: 206 SPLPQKS 212
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 18/188 (9%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+L+GD GK+ +L D + E PT+ ++ + ++++L++WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ + Y + +++ +D++R +T + W EI Y + LL+G K D
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRT 128
Query: 131 ---------KESERVVSKKEGIDFAREYGC-LFLECSAKT-RVNVEQCFEELVLKILDTP 179
+ + +S ++G A++ G ++LE SA T ++ F + L+ P
Sbjct: 129 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 188
Query: 180 SLLSEGSS 187
S L + S
Sbjct: 189 SPLPQKSP 196
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 18/187 (9%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
KL+L+GD GK+ +L D + E PT+ ++ + ++++L++WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 71
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD--- 130
+ + Y + +++ +D++R +T + W EI Y + LL+G K D
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRT 129
Query: 131 ---------KESERVVSKKEGIDFAREYGC-LFLECSAKT-RVNVEQCFEELVLKILDTP 179
+ + +S ++G A++ G ++LE SA T ++ F + L+ P
Sbjct: 130 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 189
Query: 180 SLLSEGS 186
S L + S
Sbjct: 190 SPLPQKS 196
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 7/169 (4%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSF---TSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWD 67
D +FK++L+G+SGVGKSTL +F D E+ + D + + + +++ L ++D
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENS--EDTYERRIMVDKEEVTLIVYD 67
Query: 68 TAGQ-ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126
Q + L + ++V+ VT R +F+ + + + + + D +LVG
Sbjct: 68 IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILVG 126
Query: 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
NK D R VS +EG A C +E SA N + FE V +I
Sbjct: 127 NKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G G GK+T+L PTIG F ++ V K + +WD GQ+R
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 56
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK----LLVGNKV 129
R+L YYR +G+I V D R A+E+ N+D ++ L+ NK
Sbjct: 57 IRSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQ 111
Query: 130 D 130
D
Sbjct: 112 D 112
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G G GK+T+L PTIG F ++ V K + +WD GQ+R
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD----CIKLLVGNKV 129
R+L YYR +G+I V D R A+E+ N+D + L+ NK
Sbjct: 74 IRSLWRHYYRNTEGVIFVIDSNDRSRIGE-----AREVMQRMLNEDELRNAVWLVFANKQ 128
Query: 130 D 130
D
Sbjct: 129 D 129
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G G GK+T+L PTIG F ++ V K + +WD GQ+R
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIG--FNVETVQY--KNISFTVWDVGGQDR 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK----LLVGNKV 129
R+L YYR +G+I V D R A+E+ N+D ++ L+ NK
Sbjct: 74 IRSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQ 128
Query: 130 D 130
D
Sbjct: 129 D 129
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PT+G F ++ V K +K +WD GQ++
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 378
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 379 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 434
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 7/167 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSF---TSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTA 69
+FK++L+G+SGVGKSTL +F D E+ + D + + + +++ L ++D
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS--EDTYERRIMVDKEEVTLIVYDIW 59
Query: 70 GQ-ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
Q + L + ++V+ VT R +F+ + + + + + D +LVGNK
Sbjct: 60 EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILVGNK 118
Query: 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175
D R VS +EG A C +E SA N + FE V +I
Sbjct: 119 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
+LL++G GK+T+L F + + +SPT+G + K L + KL IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 72
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRR 97
R+ +Y+ G+I V D R
Sbjct: 73 LRSYWRNYFESTDGLIWVVDSADR 96
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
+LL++G GK+T+L F + + +SPT+G + K L + KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 74
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRR 97
R+ +Y+ G+I V D R
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADR 98
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
+LL++G GK+T+L F + + +SPT+G + K L + KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 74
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRR 97
R+ +Y+ G+I V D R
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADR 98
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PT+G F ++ V K +K +WD GQ++
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 68
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 69 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 124
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PT+G F ++ V K +K +WD GQ++
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 56
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 112
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PT+G F ++ V K +K +WD GQ++
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 69
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 125
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PT+G F ++ V K +K +WD GQ++
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDK 56
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
R L YY G QG+I V D RD
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRD 81
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
D ++LL+G GK+TLL S+ ++PT G F IK V G KL +WD G
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGG 70
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTF 100
Q + R SY+ +I V D R F
Sbjct: 71 QRKIRPYWRSYFENTDILIYVIDSADRKRF 100
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70
D ++LL+G GK+TLL S+ ++PT G F IK V G KL +WD G
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGG 69
Query: 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTF 100
Q + R SY+ +I V D R F
Sbjct: 70 QRKIRPYWRSYFENTDILIYVIDSADRKRF 99
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+ +LL++G GK+T+L F + + +SPT+G + K L + KL IWD G +
Sbjct: 1 MLRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGLK 56
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRR 97
R+ +Y+ G+I V D R
Sbjct: 57 SLRSYWRNYFESTDGLIWVVDSADR 81
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 11/157 (7%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+L L+G GK+T + S F E++ PT+G F ++ V G +K IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGNVTIK--IWDIGGQP 78
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132
RFR++ Y RG I+ + D R+ + +D Q L++GNK D
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQL-QGIPVLVLGNKRDLP 137
Query: 133 S---ERVVSKKEGIDFA--REYGCLFLECSAKTRVNV 164
+ E+ + +K + RE C + C K +++
Sbjct: 138 NALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDI 174
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
++L +G GK+T+L PT+G F ++ V K +K +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGQDKI 57
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 58 RPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN-DREXRDAIILIFANKQD 112
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
++LL+G GK+TLL S+ ++PT G F IK V G KL +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGGQRKI 61
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTF 100
R SY+ +I V D R F
Sbjct: 62 RPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PTIG F ++ V K + +WD GQ++
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNICFTVWDVGGQDK 85
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133
R L Y++ QG+I V D R+ AD K + +D + L+ NK D +
Sbjct: 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ-EDELRDAVLLVFANKQDMPN 144
Query: 134 ERVVSK 139
VS+
Sbjct: 145 AMPVSE 150
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PTIG F ++ V K + +WD GQ++
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 76
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L Y++ QG+I V D RD D + ++ +D + L+ NK D
Sbjct: 77 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQD 132
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+++L PTIG F ++ V K + +WD GQ++
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD----CIKLLVGNKV 129
R L YY+ Q II V D RD A+E + N+D I L+ NK
Sbjct: 74 IRPLWRHYYQNTQAIIFVVDSNDRDRIGE-----AREELMKMLNEDEMRNAILLVFANKH 128
Query: 130 D 130
D
Sbjct: 129 D 129
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G G GK+T+L PTIG + + L K +KL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQTS 74
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN---QDCIKLLVGNKVD 130
R YY +I V D T +D + +KE+ L QD L+ NK D
Sbjct: 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTA----SKELHLMLQEEELQDAALLVFANKQD 130
Query: 131 K 131
+
Sbjct: 131 Q 131
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PT+G F ++ V K +K +WD G ++
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 69
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 125
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PT+G F ++ V K +K +WD G ++
Sbjct: 3 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 58
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 59 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 114
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PT+G F ++ V K +K +WD G ++
Sbjct: 4 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVG--FNVETVTY--KNVKFNVWDVGGLDK 59
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130
R L YY G QG+I V D RD + I+ +D I L+ NK D
Sbjct: 60 IRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREM-RDAIILIFANKQD 115
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAI 65
S QE K++++G GK+T+L F+ + SPTIG + ++ + + + +
Sbjct: 19 SHQEH----KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINNTR--FLM 70
Query: 66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD 98
WD GQE R+ ++YY + +I+V D T R+
Sbjct: 71 WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRE 103
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
K++++G GK+T+L F+ + SPTIG + ++ + + + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINNTR--FLMWDIGGQESL 73
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRD 98
R+ ++YY + +I+V D T R+
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
K++++G GK+T+L F+ + SPTIG + ++ + + + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINNTR--FLMWDIGGQESL 73
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRD 98
R+ ++YY + +I+V D T R+
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 11/157 (7%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+L L+G GK+T + S F E++ PT+G F ++ + G +KL WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 78
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD-- 130
RFR++ Y RG I+ + D ++ + +D Q L++GNK D
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQL-QGIPVLVLGNKRDLP 137
Query: 131 ---KESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164
E E + RE C + C K +++
Sbjct: 138 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 174
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
K++++G GK+T+L F+ + SPTIG + ++ + + + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVI--NNTRFLMWDIGGQESL 78
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRD 98
R+ ++YY + +I+V D T R+
Sbjct: 79 RSSWNTYYTNTEFVIVVVDSTDRE 102
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PTIG F ++ V K + +WD GQ++
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 221
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
R L Y++ QG+I V D R+
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRE 246
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 25/164 (15%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
+L L+G GK+T + S F E++ PT+G F ++ + G +KL WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGNVTIKL--WDIGGQP 87
Query: 73 RFRTLTSSYYRGAQGIIMVYDV-------TRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125
RFR++ Y RG I+ + D ++ NL D Q L++
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLD--------KPQLQGIPVLVL 139
Query: 126 GNKVD-----KESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164
GNK D E E + RE C + C K +++
Sbjct: 140 GNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI 183
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed
With Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain
Carrying The Mutation Of The Catalytic Glutamate To
Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PTIG F ++ V K + +WD GQ++
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 56
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
R L Y++ QG+I V D R+
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRE 81
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 14/160 (8%)
Query: 10 FDYLF-----KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLA 64
F+ LF ++L++G GK+T+L PTIG F ++ V + +
Sbjct: 9 FNRLFQKKDVRILMVGLDAAGKTTILYKVKLGEVVTTIPTIG--FNVETVEF--RNISFT 64
Query: 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
+WD GQ++ R L YY G+I V D R+ + + + I+ +D I L+
Sbjct: 65 VWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAREELHRMINEEEL-KDAIILV 123
Query: 125 VGNKVD---KESERVVSKKEGIDFAREYGCLFLECSAKTR 161
NK D S V++K ++ RE F++ + TR
Sbjct: 124 FANKQDLPNAMSAAEVTEKLHLNTIRERNW-FIQSTCATR 162
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Query: 24 VGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR 83
GK+T+L F + + +SPT+G + K L + KL IWD GQ+ R+ +Y+
Sbjct: 29 AGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 84 GAQGIIMVYDVTRR 97
G+I V D R
Sbjct: 85 STDGLIWVVDSADR 98
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PTIG F ++ V K + +WD GQ++
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 72
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
R L Y++ QG+I V D R+
Sbjct: 73 IRPLWRHYFQNTQGLIFVVDSNDRE 97
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 14/115 (12%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
K++++G GK+T+L F + SPTIG + ++ + + K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSN--VEEIVV--KNTHFLMWDIGGQESL 73
Query: 75 RTLTSSYYRGAQGIIMVYD--------VTRRDTFTNLA--DIWAKEIDLYSTNQD 119
R+ ++YY + II+V D +T+ + + LA D+ + +++ QD
Sbjct: 74 RSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQD 128
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Monomeric Crystal Form
Length = 181
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PTIG F ++ V K + +WD GQ++
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGQDK 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
R L Y++ QG+I V D R+
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDRE 98
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G G GK+T+L PTIG + + + +WD GQ+R
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVECVQYC----NISFTVWDVGGQDR 73
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRR 97
R+L YY +G+I V D R
Sbjct: 74 IRSLWRHYYCNTEGVIFVVDSNDR 97
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
++LL+G GK+TLL S+ ++PT G F IK V G KL +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQG--FNIKSVQSQG--FKLNVWDIGGLRKI 61
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTF 100
R SY+ +I V D R F
Sbjct: 62 RPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL---SPTIGVDFKIKHVALGGKKMK---LAIWDT 68
KL ++G++G GK+TLL +L S T+G+D K + + K+ + L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AG+E F + + + VYD+++ + W I +++ I LVG
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI--LVGTH 119
Query: 129 VDKESER 135
+D E+
Sbjct: 120 LDVSDEK 126
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 8/127 (6%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL---SPTIGVDFKIKHVALGGKKMK---LAIWDT 68
KL ++G++G GK+TLL +L S T+G+D K + + K+ + L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128
AG+E F + + + VYD+++ + W I +++ I LVG
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI--LVGTH 121
Query: 129 VDKESER 135
+D E+
Sbjct: 122 LDVSDEK 128
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In
Complex With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G GK+T+L PTIG F ++ V K + +WD G ++
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY--KNISFTVWDVGGLDK 58
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
R L Y++ QG+I V D R+
Sbjct: 59 IRPLWRHYFQNTQGLIFVVDSNDRE 83
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G G GK+T+L PTIG F ++ V K +K +WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGQTS 58
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
R YY +I V D RD
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDSCDRD 83
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 73/143 (51%), Gaps = 11/143 (7%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDT---FEELSPTIGVDFKIKHVALGGK--KMKLAIWDTA 69
K+ ++G++ VGKS L+ FTS ++ + T GV+ + V + ++L + DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD--CIKLLVGN 127
G + ++ S Y+ G I+V+DV+ ++F + W + + +++ +LV N
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFES-CKAWFELLKSARPDRERPLRAVLVAN 140
Query: 128 KVDKESERVVSKKEGIDFAREYG 150
K D +R + +D A+++
Sbjct: 141 KTDLPPQR---HQVRLDMAQDWA 160
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 25/127 (19%)
Query: 16 LLLIGDSGVGKSTLL--LSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
+L +G GK+T++ L ++ + + PTIG F I+ + ++D +GQ R
Sbjct: 24 VLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIE--KFKSSSLSFTVFDMSGQGR 79
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDLYSTNQDCIKL 123
+R L YY+ Q II V D + R DT N DI + I + L
Sbjct: 80 YRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPI---------L 130
Query: 124 LVGNKVD 130
NK+D
Sbjct: 131 FFANKMD 137
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
++L++G G GK+T+L PTIG F ++ V K +K +WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTS 60
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRD 98
R YY +I V D RD
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDSCDRD 85
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
++L++G G GK+T+L PTIG F ++ V K +K +WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTTIPTIG--FNVETVTY--KNLKFQVWDLGGLTSI 64
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRD 98
R YY +I V D RD
Sbjct: 65 RPYWRCYYSNTDAVIYVVDSCDRD 88
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 81/170 (47%), Gaps = 16/170 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
+L ++GD+ GKS+L+ F + +++ L T +K K + + G+ + I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK-KEMLVDGQTHLVLIREEAGAP- 65
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVG--NKVD 130
+ + A +I V+ + ++F ++ + + L + + L LVG +++
Sbjct: 66 ----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121
Query: 131 KESERVV----SKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
S RVV ++ D R C + E A +NV++ F+E+ K++
Sbjct: 122 ASSPRVVGDARARALXADMKR---CSYYETXATYGLNVDRVFQEVAQKVV 168
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
KLL +G GK+TLL +D L PT + +A+G +K +D G +
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHP--TSEELAIG--NIKFTTFDLGGHIQA 58
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEID-LYSTNQ--DCIKLLVGNKVDK 131
R L Y+ GI+ + D + F D E+D L++ + D +++GNK+D
Sbjct: 59 RRLWKDYFPEVNGIVFLVDAADPERF----DEARVELDALFNIAELKDVPFVILGNKID- 113
Query: 132 ESERVVSKKE 141
+ VS+ E
Sbjct: 114 -APNAVSEAE 122
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73
+L ++GD+ GKS+L+ F + +++ L T +K K + + G+ + I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK-KEMLVDGQTHLVLIREEAGAP- 65
Query: 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVG--NKVD 130
+ + A +I V+ + ++F ++ + + L + + L LVG +++
Sbjct: 66 ----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121
Query: 131 KESERVVSKKEG----IDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
S RVV D R C + E A +NV++ F+E+ K++
Sbjct: 122 ASSPRVVGDARARALCADMKR---CSYYETCATYGLNVDRVFQEVAQKVV 168
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
KLL +G GK+TLL +D L PT + +A+G +K +D G +
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHP--TSEELAIG--NIKFTTFDLGGHIQA 80
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEID-LYSTNQ--DCIKLLVGNKVDK 131
R L Y+ GI+ + D + F D E+D L++ + D +++GNK+D
Sbjct: 81 RRLWKDYFPEVNGIVFLVDAADPERF----DEARVELDALFNIAELKDVPFVILGNKID- 135
Query: 132 ESERVVSKKE 141
+ VS+ E
Sbjct: 136 -APNAVSEAE 144
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 15 KLLLIGDSGVGKSTL--LLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
KLLL+G SG GKS++ ++ F+ +D + H+ G M L +WD GQ+
Sbjct: 8 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQD 66
Query: 73 -----RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEI 111
F ++ Q +I V+DV + ++ +I+AK +
Sbjct: 67 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDI-EIFAKAL 109
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 14 FKLLLIGDSGVGKSTLLLS-FTSDTF---------EELSPTIGVDFKIKHVALGGKKMKL 63
F L+++G+SG+GKSTL+ S F +D + E++ T+ ++ + G K++L
Sbjct: 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRL 97
Query: 64 AIWDTAG 70
+ DT G
Sbjct: 98 TVVDTPG 104
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 14 FKLLLIGDSGVGKSTLLLS-FTSDTF---------EELSPTIGVDFKIKHVALGGKKMKL 63
F L+++G+SG+GKSTL+ S F +D + E++ T+ ++ + G K++L
Sbjct: 6 FTLMVVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKLRL 65
Query: 64 AIWDTAG 70
+ DT G
Sbjct: 66 TVVDTPG 72
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 23/139 (16%)
Query: 44 TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL 103
++ +D+K A G+ +L DT G F S +G ++V D + L
Sbjct: 58 SVTLDYK----ASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTL 113
Query: 104 ADIW-AKEIDLYSTNQDCIKLLVGNKVD---KESERVVSKKE---GIDFAREYGCLFLEC 156
A+ + A E+DL + + +L NK+D + ERV + E GID + C
Sbjct: 114 ANCYTAMEMDL-----EVVPVL--NKIDLPAADPERVAEEIEDIVGIDATDA-----VRC 161
Query: 157 SAKTRVNVEQCFEELVLKI 175
SAKT V V+ E LV I
Sbjct: 162 SAKTGVGVQDVLERLVRDI 180
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 23/139 (16%)
Query: 44 TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNL 103
++ +D+K A G+ +L DT G F S +G ++V D + L
Sbjct: 58 SVTLDYK----ASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTL 113
Query: 104 ADIW-AKEIDLYSTNQDCIKLLVGNKVD---KESERVVSKKE---GIDFAREYGCLFLEC 156
A+ + A E+DL + + +L NK+D + ERV + E GID + C
Sbjct: 114 ANCYTAMEMDL-----EVVPVL--NKIDLPAADPERVAEEIEDIVGIDATDA-----VRC 161
Query: 157 SAKTRVNVEQCFEELVLKI 175
SAKT V V+ E LV I
Sbjct: 162 SAKTGVGVQDVLERLVRDI 180
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 13/70 (18%)
Query: 12 YLFKLLLIGDSGVGKSTLLLS-FTSDTFEELSPTIGVDFKIKH----------VALGGKK 60
+ F L+++G+SG+GKSTL+ S F +D + P G +IK + GG +
Sbjct: 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYP--GPSHRIKKTVQVEQSKVLIKEGGVQ 87
Query: 61 MKLAIWDTAG 70
+ L I DT G
Sbjct: 88 LLLTIVDTPG 97
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 12 YLFKLLLIGDSGVGKSTLLLS-FTSDTF---------EELSPTIGVDFKIKHVALGGKKM 61
+ F L ++G+SG+GKSTL+ S F +D + E++ T+ ++ + G K+
Sbjct: 17 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 62 KLAIWDTAG 70
+L + DT G
Sbjct: 77 RLTVVDTPG 85
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 12 YLFKLLLIGDSGVGKSTLLLS-FTSDTF---------EELSPTIGVDFKIKHVALGGKKM 61
+ F L ++G+SG+GKSTL+ S F +D + E++ T+ ++ + G K+
Sbjct: 36 FEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKL 95
Query: 62 KLAIWDTAG 70
+L + DT G
Sbjct: 96 RLTVVDTPG 104
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 15/137 (10%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVA-LGG-------KKMKLA 64
K+ LIGD GK++LL +TF+ + S T G++ K + G K+
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124
WD GQE + ++ + M+ +R D+ + W + I+ Y I +
Sbjct: 102 FWDFGGQEIMHA-SHQFFMTRSSVYMLLLDSRTDSNKHY---WLRHIEKYGGKSPVI--V 155
Query: 125 VGNKVDKESERVVSKKE 141
V NK+D+ + +K+
Sbjct: 156 VMNKIDENPSYNIEQKK 172
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Query: 14 FKLLLIGDSGVGKSTLLLS-FTSDTFEELSPTIGVDFKIKH----------VALGGKKMK 62
F L+++G+SG+GKSTL+ S F +D + P G +IK + GG ++
Sbjct: 4 FTLMVVGESGLGKSTLINSLFLTDLYSPEYP--GPSHRIKKTVQVEQSKVLIKEGGVQLL 61
Query: 63 LAIWDTAG 70
L I DT G
Sbjct: 62 LTIVDTPG 69
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 78/170 (45%), Gaps = 18/170 (10%)
Query: 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72
K+ ++G+ GKS L+ + + T+ +E SP G FK K + + G+ L I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFK-KEIVVDGQSYLLLIRDEGGPP 78
Query: 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK--VD 130
+ + ++ V+ + +F + + + + + + + +LVG + +
Sbjct: 79 ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLR-LCSFRNASEVPMVLVGTQDAIS 132
Query: 131 KESERVV----SKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176
+ RV+ ++K D R C + E A +NVE+ F+++ K++
Sbjct: 133 AANPRVIDDSRARKLSTDLKR---CTYYETCATYGLNVERVFQDVAQKVV 179
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Query: 14 FKLLLIGDSGVGKSTLLLS-FTSDTFEELSPTIGVDFKIKH----------VALGGKKMK 62
F L+++G+SG+GKSTL+ S F +D + P G +IK + GG ++
Sbjct: 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYP--GPSHRIKKTVQVEQSKVLIKEGGVQLL 66
Query: 63 LAIWDTAG 70
L I DT G
Sbjct: 67 LTIVDTPG 74
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 14 FKLLLIGDSGVGKSTLLLSF---------TSDTFEELSPTIGVDFKIKHV-ALGGKKMKL 63
F ++++G SG+GKSTL+ + +S EE P I HV GG KMKL
Sbjct: 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKL 62
Query: 64 AIWDTAG 70
+ DT G
Sbjct: 63 TVIDTPG 69
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 5/117 (4%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
KL+ +G GK+TLL D + PT+ + +A M +D G E+
Sbjct: 37 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA----GMTFTTFDLGGHEQA 92
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131
R + +Y GI+ + D + + + T + L++GNK+D+
Sbjct: 93 RRVWKNYLPAINGIVFLVDCADHSRLVE-SKVELNALMTDETISNVPILILGNKIDR 148
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 11/120 (9%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
KL+ +G GK+TLL D + PT+ + +A M +D G +
Sbjct: 24 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA----GMTFTTFDLGGHIQA 79
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKVDK 131
R + +Y GI+ + D + + E+D T++ L++GNK+D+
Sbjct: 80 RRVWKNYLPAINGIVFLVDCADHERLLESKE----ELDSLMTDETIANVPILILGNKIDR 135
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 11/120 (9%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
KL+ +G GK+TLL D + PT+ + +A M +D G +
Sbjct: 27 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA----GMTFTTFDLGGHIQA 82
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKVDK 131
R + +Y GI+ + D + + E+D T++ L++GNK+D+
Sbjct: 83 RRVWKNYLPAINGIVFLVDCADHERLLESKE----ELDSLMTDETIANVPILILGNKIDR 138
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR------RDTFTNLADIW-AKEIDLY 114
K+AI+ GQ TL + G + ++V D +R R + D+ A ++D
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT 64
Query: 115 STNQDCIKLLVGNKVDKESERVVSK 139
QD + +L+G + D V+S+
Sbjct: 65 VAGQDAVIVLLGTRNDLSPTTVMSE 89
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 11/120 (9%)
Query: 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74
KL+ +G GK+TLL D + PT+ + +A M +D G +
Sbjct: 18 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA----GMTFTTFDLGGGIQA 73
Query: 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK---LLVGNKVDK 131
R + +Y GI+ + D + + E+D T++ L++GNK+D+
Sbjct: 74 RRVWKNYLPAINGIVFLVDCADHERLLESKE----ELDSLMTDETIANVPILILGNKIDR 129
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 30.8 bits (68), Expect = 0.60, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 49 FKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR-GAQGIIMVYDVTRRDTFTNLADIW 107
+K+ +A K D G + + + + R GA+ ++M + R DTF+ + D+
Sbjct: 128 YKVPRIAFANKM------DKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
Query: 108 AKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164
+ Y GN + + + +E +D AREY +E +A N+
Sbjct: 182 RMKAYTY-----------GNDLGTDIREIPIPEEYLDNAREYHEKLVEVAADFDENI 227
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 30.8 bits (68), Expect = 0.61, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 49 FKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR-GAQGIIMVYDVTRRDTFTNLADIW 107
+K+ +A K D G + + + + R GA+ ++M + R DTF+ + D+
Sbjct: 128 YKVPRIAFANKM------DKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
Query: 108 AKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164
+ Y GN + + + +E +D AREY +E +A N+
Sbjct: 182 RMKAYTY-----------GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENI 227
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 30.8 bits (68), Expect = 0.63, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 49 FKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR-GAQGIIMVYDVTRRDTFTNLADIW 107
+K+ +A K D G + + + + R GA+ ++M + R DTF+ + D+
Sbjct: 95 YKVPRIAFANKM------DKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 148
Query: 108 AKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164
+ Y GN + + + +E +D AREY +E +A N+
Sbjct: 149 RMKAYTY-----------GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENI 194
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 30.8 bits (68), Expect = 0.63, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 49 FKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR-GAQGIIMVYDVTRRDTFTNLADIW 107
+K+ +A K D G + + + + R GA+ ++M + R DTF+ + D+
Sbjct: 128 YKVPRIAFANKM------DKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
Query: 108 AKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164
+ Y GN + + + +E +D AREY +E +A N+
Sbjct: 182 RMKAYTY-----------GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENI 227
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 30.8 bits (68), Expect = 0.63, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 49 FKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR-GAQGIIMVYDVTRRDTFTNLADIW 107
+K+ +A K D G + + + + R GA+ ++M + R DTF+ + D+
Sbjct: 128 YKVPRIAFANKM------DKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
Query: 108 AKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164
+ Y GN + + + +E +D AREY +E +A N+
Sbjct: 182 RMKAYTY-----------GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENI 227
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 30.8 bits (68), Expect = 0.63, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 49 FKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR-GAQGIIMVYDVTRRDTFTNLADIW 107
+K+ +A K D G + + + + R GA+ ++M + R DTF+ + D+
Sbjct: 128 YKVPRIAFANKM------DKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
Query: 108 AKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164
+ Y GN + + + +E +D AREY +E +A N+
Sbjct: 182 RMKAYTY-----------GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENI 227
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 30.8 bits (68), Expect = 0.63, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 49 FKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR-GAQGIIMVYDVTRRDTFTNLADIW 107
+K+ +A K D G + + + + R GA+ ++M + R DTF+ + D+
Sbjct: 128 YKVPRIAFANKM------DKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
Query: 108 AKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164
+ Y GN + + + +E +D AREY +E +A N+
Sbjct: 182 RMKAYTY-----------GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENI 227
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 30.8 bits (68), Expect = 0.63, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 49 FKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR-GAQGIIMVYDVTRRDTFTNLADIW 107
+K+ +A K D G + + + + R GA+ ++M + R DTF+ + D+
Sbjct: 128 YKVPRIAFANKM------DKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
Query: 108 AKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164
+ Y GN + + + +E +D AREY +E +A N+
Sbjct: 182 RMKAYTY-----------GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENI 227
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 30.8 bits (68), Expect = 0.63, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 49 FKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR-GAQGIIMVYDVTRRDTFTNLADIW 107
+K+ +A K D G + + + + R GA+ ++M + R DTF+ + D+
Sbjct: 128 YKVPRIAFANKM------DKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVL 181
Query: 108 AKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164
+ Y GN + + + +E +D AREY +E +A N+
Sbjct: 182 RMKAYTY-----------GNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENI 227
>pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|C Chain C, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEA|D Chain D, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.2 Angstrom Resolution
pdb|1FEB|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEB|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 2.0 Angstrom Resolution
pdb|1FEC|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
pdb|1FEC|B Chain B, Unliganded Crithidia Fasciculata Trypanothione Reductase
At 1.7 Angstrom Resolution
Length = 490
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 119 DCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
D + L +G +V + S+ + +K G++ A+ G + ++ +KT V+ ++ +++ T
Sbjct: 278 DVVMLAIG-RVPR-SQTLQLEKAGVEVAKN-GAIKVDAYSKTNVDNIYAIGDVTDRVMLT 334
Query: 179 PSLLSEGSSGVKKNIFKESPPQNDASTTGCC 209
P ++EG++ V +F P D + C
Sbjct: 335 PVAINEGAAFV-DTVFANKPRATDHTKVACA 364
>pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
pdb|2TPR|B Chain B, X-ray Structure Of Trypanothione Reductase From Crithidia
Fasciculata At 2.4 Angstroms Resolution
Length = 490
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 119 DCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
D + L +G +V + S+ + +K G++ A+ G + ++ +KT V+ ++ +++ T
Sbjct: 278 DVVMLAIG-RVPR-SQTLQLEKAGVEVAKN-GAIKVDAYSKTNVDNIYAIGDVTDRVMLT 334
Query: 179 PSLLSEGSSGVKKNIFKESPPQNDASTTGCC 209
P ++EG++ V +F P D + C
Sbjct: 335 PVAINEGAAFV-DTVFANKPRATDHTKVACA 364
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE-----ELSPTIGVDFKIKHVALGGKKMKLAIW 66
+ F +L +G++G+GKSTL+ + + FE P + + + ++KL I
Sbjct: 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIV 100
Query: 67 DTAG 70
T G
Sbjct: 101 STVG 104
>pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
pdb|1TYP|B Chain B, Substrate Interactions Between Trypanothione Reductase And
N1-Glutathionylspermidine Disulphide At 0.28-Nm
Resolution
Length = 487
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 119 DCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
D + L +G +V + S+ + K G++ A+ G + ++ +KT V+ ++ +++ T
Sbjct: 279 DVVMLAIG-RVPR-SQTLQLDKAGVEVAKN-GAIKVDAYSKTNVDNIYAIGDVTDRVMLT 335
Query: 179 PSLLSEGSSGVKKNIFKESPPQNDASTTGCC 209
P ++EG++ V +F P D + C
Sbjct: 336 PVAINEGAAFV-DTVFANKPRATDHTKVACA 365
>pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
pdb|1TYT|B Chain B, Crystal And Molecular Structure Of Crithidia Fasciculata
Trypanothione Reductase At 2.6 Angstroms Resolution
Length = 487
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 119 DCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178
D + L +G +V + S+ + K G++ A+ G + ++ +KT V+ ++ +++ T
Sbjct: 279 DVVMLAIG-RVPR-SQTLQLDKAGVEVAKN-GAIKVDAYSKTNVDNIYAIGDVTDRVMLT 335
Query: 179 PSLLSEGSSGVKKNIFKESPPQNDASTTGCC 209
P ++EG++ V +F P D + C
Sbjct: 336 PVAINEGAAFV-DTVFANKPRATDHTKVACA 365
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 9 EFDYLFKLLLI--GDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIW 66
+F + K +I GD G T +S +TF + +FK+KH +G M A
Sbjct: 64 KFHRVIKDFMIQGGDITTGDGTGGVSIYGETFPDE------NFKLKHYGIGWVSMANAGP 117
Query: 67 DTAGQERFRTLTSSYYRGAQGIIM 90
DT G + F TLT + + ++
Sbjct: 118 DTNGSQFFITLTKPTWLDGKHVVF 141
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 17/40 (42%)
Query: 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD 98
K + +WD GQ R Y+ +I V D T RD
Sbjct: 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD 103
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93
++ ++D G ++FR L +YY +I V D
Sbjct: 62 RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVD 95
>pdb|1KQW|A Chain A, Crystal Structure Of Holo-Crbp From Zebrafish
pdb|1KQX|A Chain A, Crystal Structure Of Apo-Crbp From Zebrafish
Length = 134
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 33 FTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86
++D FE++ + +DF + +A+ K+ K+ + ++F T T S +R +
Sbjct: 11 LSNDNFEDVMKALDIDFATRKIAVHLKQTKVIV---QNGDKFETKTLSTFRNYE 61
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 48 DFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90
+FK+KH +G M A DT G + F TLT + + ++
Sbjct: 91 NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVF 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,866,002
Number of Sequences: 62578
Number of extensions: 232531
Number of successful extensions: 1853
Number of sequences better than 100.0: 384
Number of HSP's better than 100.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 952
Number of HSP's gapped (non-prelim): 385
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)