Query 028292
Match_columns 211
No_of_seqs 135 out of 1687
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 09:15:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1E-43 2.2E-48 244.6 20.5 201 7-210 3-205 (205)
2 KOG0080 GTPase Rab18, small G 100.0 3.4E-43 7.3E-48 233.7 19.0 203 8-211 6-209 (209)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 1E-41 2.3E-46 233.8 20.1 197 11-210 3-200 (200)
4 KOG0078 GTP-binding protein SE 100.0 9.2E-40 2E-44 228.2 21.1 177 4-182 3-180 (207)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.6E-39 3.5E-44 223.1 19.4 170 10-180 19-189 (221)
6 KOG0098 GTPase Rab2, small G p 100.0 3.9E-39 8.4E-44 219.6 16.5 167 10-178 3-170 (216)
7 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.3E-38 4.9E-43 230.5 21.5 195 14-209 1-201 (201)
8 PLN03118 Rab family protein; P 100.0 6.9E-38 1.5E-42 229.6 23.7 205 6-210 7-211 (211)
9 cd04120 Rab12 Rab12 subfamily. 100.0 1.3E-37 2.8E-42 225.3 22.6 163 14-178 1-165 (202)
10 cd04121 Rab40 Rab40 subfamily. 100.0 1.5E-37 3.3E-42 223.0 21.9 167 10-179 3-170 (189)
11 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.3E-37 2.9E-42 216.5 18.3 171 6-178 7-178 (222)
12 KOG0394 Ras-related GTPase [Ge 100.0 1.6E-37 3.5E-42 211.3 17.6 170 11-181 7-183 (210)
13 PLN03110 Rab GTPase; Provision 100.0 1.8E-36 3.8E-41 222.5 23.1 169 8-178 7-176 (216)
14 cd04110 Rab35 Rab35 subfamily. 100.0 4.3E-36 9.4E-41 218.1 22.5 195 11-209 4-199 (199)
15 cd04112 Rab26 Rab26 subfamily. 100.0 4E-36 8.7E-41 217.0 21.5 189 14-209 1-191 (191)
16 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 7.7E-36 1.7E-40 219.4 23.1 171 7-180 7-192 (232)
17 KOG0088 GTPase Rab21, small G 100.0 2.6E-37 5.5E-42 205.3 13.4 207 3-211 3-218 (218)
18 cd04126 Rab20 Rab20 subfamily. 100.0 3.3E-36 7.1E-41 220.3 20.2 187 14-209 1-220 (220)
19 cd04133 Rop_like Rop subfamily 100.0 9.5E-36 2.1E-40 211.5 21.0 160 14-176 2-173 (176)
20 KOG0093 GTPase Rab3, small G p 100.0 1.1E-36 2.5E-41 199.7 14.7 174 5-180 13-187 (193)
21 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1E-35 2.3E-40 212.5 20.7 163 11-176 3-180 (182)
22 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 9.1E-36 2E-40 211.6 20.2 164 13-178 2-166 (172)
23 KOG0079 GTP-binding protein H- 100.0 3E-37 6.5E-42 202.7 11.5 166 11-179 6-172 (198)
24 cd04122 Rab14 Rab14 subfamily. 100.0 1.3E-35 2.9E-40 209.8 20.6 163 13-177 2-165 (166)
25 PTZ00369 Ras-like protein; Pro 100.0 1.2E-35 2.7E-40 214.2 20.1 165 12-178 4-169 (189)
26 cd04109 Rab28 Rab28 subfamily. 100.0 3E-35 6.5E-40 216.1 21.8 165 14-179 1-169 (215)
27 cd04131 Rnd Rnd subfamily. Th 100.0 2.6E-35 5.5E-40 210.1 20.6 161 13-176 1-176 (178)
28 cd04144 Ras2 Ras2 subfamily. 100.0 1.8E-35 4E-40 213.4 19.9 165 15-181 1-168 (190)
29 cd04125 RabA_like RabA-like su 100.0 5.6E-35 1.2E-39 210.7 21.6 164 14-179 1-165 (188)
30 cd01867 Rab8_Rab10_Rab13_like 100.0 4.2E-35 9.1E-40 207.5 20.6 164 12-177 2-166 (167)
31 cd01875 RhoG RhoG subfamily. 100.0 5.7E-35 1.2E-39 210.8 21.5 163 12-177 2-178 (191)
32 cd04127 Rab27A Rab27a subfamil 100.0 4.5E-35 9.8E-40 209.8 20.1 167 11-178 2-179 (180)
33 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.1E-34 2.3E-39 212.4 22.3 166 14-182 2-182 (222)
34 cd04111 Rab39 Rab39 subfamily. 100.0 1.4E-34 3E-39 211.7 22.1 166 13-179 2-169 (211)
35 cd04117 Rab15 Rab15 subfamily. 100.0 1.2E-34 2.5E-39 204.0 19.6 159 14-174 1-160 (161)
36 cd01865 Rab3 Rab3 subfamily. 100.0 2.2E-34 4.8E-39 203.4 20.9 162 14-177 2-164 (165)
37 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.5E-34 3.3E-39 205.8 20.2 160 13-175 1-174 (175)
38 cd04119 RJL RJL (RabJ-Like) su 100.0 1.9E-34 4.2E-39 204.1 20.0 163 14-177 1-168 (168)
39 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.8E-34 6E-39 203.1 20.5 163 13-177 2-165 (166)
40 cd04118 Rab24 Rab24 subfamily. 100.0 6.4E-34 1.4E-38 206.0 22.8 163 14-179 1-169 (193)
41 PLN03108 Rab family protein; P 100.0 5.7E-34 1.2E-38 208.4 22.7 167 11-179 4-171 (210)
42 cd04136 Rap_like Rap-like subf 100.0 2.4E-34 5.3E-39 202.7 19.6 160 14-175 2-162 (163)
43 KOG0091 GTPase Rab39, small G 100.0 3.1E-35 6.8E-40 196.3 13.8 171 8-179 3-176 (213)
44 cd04128 Spg1 Spg1p. Spg1p (se 100.0 3.7E-34 8E-39 204.9 20.3 166 14-182 1-172 (182)
45 PLN03071 GTP-binding nuclear p 100.0 4.2E-34 9E-39 210.2 21.0 168 7-179 7-175 (219)
46 KOG0086 GTPase Rab4, small G p 100.0 6.1E-35 1.3E-39 192.9 14.4 170 7-178 3-173 (214)
47 cd04132 Rho4_like Rho4-like su 100.0 6.7E-34 1.5E-38 204.9 20.1 166 14-182 1-173 (187)
48 cd01868 Rab11_like Rab11-like. 100.0 8.7E-34 1.9E-38 200.4 20.0 162 12-175 2-164 (165)
49 cd04175 Rap1 Rap1 subgroup. T 100.0 8.2E-34 1.8E-38 200.3 19.7 162 13-176 1-163 (164)
50 PF00071 Ras: Ras family; Int 100.0 7.1E-34 1.5E-38 200.2 19.3 160 15-176 1-161 (162)
51 cd01866 Rab2 Rab2 subfamily. 100.0 1.6E-33 3.4E-38 199.6 20.9 165 11-177 2-167 (168)
52 cd01864 Rab19 Rab19 subfamily. 100.0 1.5E-33 3.2E-38 199.2 19.8 161 12-174 2-164 (165)
53 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 2.2E-33 4.9E-38 199.0 20.2 163 15-178 2-167 (170)
54 smart00173 RAS Ras subfamily o 100.0 1.8E-33 3.9E-38 198.6 19.6 161 14-176 1-162 (164)
55 cd04134 Rho3 Rho3 subfamily. 100.0 3.6E-33 7.8E-38 201.2 21.6 161 14-177 1-175 (189)
56 cd01871 Rac1_like Rac1-like su 100.0 2.1E-33 4.5E-38 199.8 19.9 158 14-174 2-173 (174)
57 cd04113 Rab4 Rab4 subfamily. 100.0 1.7E-33 3.7E-38 198.1 19.1 159 14-174 1-160 (161)
58 cd04176 Rap2 Rap2 subgroup. T 100.0 2.2E-33 4.8E-38 197.9 19.4 161 13-175 1-162 (163)
59 KOG0095 GTPase Rab30, small G 100.0 3.4E-34 7.5E-39 188.7 14.1 168 9-178 3-171 (213)
60 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3.4E-33 7.4E-38 198.2 20.0 163 12-175 1-168 (170)
61 cd00877 Ran Ran (Ras-related n 100.0 4.6E-33 1E-37 196.7 20.5 161 14-179 1-162 (166)
62 cd04106 Rab23_lke Rab23-like s 100.0 3.3E-33 7.2E-38 196.8 18.6 158 14-174 1-161 (162)
63 cd04145 M_R_Ras_like M-Ras/R-R 100.0 6.4E-33 1.4E-37 195.7 20.1 161 13-175 2-163 (164)
64 smart00175 RAB Rab subfamily o 100.0 7.5E-33 1.6E-37 195.3 20.0 162 14-177 1-163 (164)
65 cd04140 ARHI_like ARHI subfami 100.0 8E-33 1.7E-37 195.4 19.8 159 14-174 2-163 (165)
66 cd04138 H_N_K_Ras_like H-Ras/N 100.0 9.3E-33 2E-37 194.3 20.0 160 13-175 1-161 (162)
67 cd04124 RabL2 RabL2 subfamily. 100.0 1.1E-32 2.3E-37 194.0 20.1 160 14-179 1-161 (161)
68 smart00174 RHO Rho (Ras homolo 100.0 9.8E-33 2.1E-37 196.6 20.0 159 16-177 1-173 (174)
69 cd04116 Rab9 Rab9 subfamily. 100.0 1.2E-32 2.7E-37 195.4 20.2 162 11-174 3-169 (170)
70 KOG0081 GTPase Rab27, small G 100.0 2.6E-35 5.7E-40 195.9 5.4 174 8-182 4-187 (219)
71 cd01873 RhoBTB RhoBTB subfamil 100.0 1.8E-32 3.8E-37 197.8 19.7 158 13-174 2-194 (195)
72 cd01860 Rab5_related Rab5-rela 100.0 3.3E-32 7.3E-37 191.8 20.1 161 13-175 1-162 (163)
73 cd04142 RRP22 RRP22 subfamily. 100.0 3.5E-32 7.6E-37 196.9 20.6 167 14-181 1-179 (198)
74 cd01861 Rab6 Rab6 subfamily. 100.0 3.3E-32 7.1E-37 191.5 19.4 159 14-174 1-160 (161)
75 smart00176 RAN Ran (Ras-relate 100.0 3.4E-32 7.4E-37 196.7 19.1 155 19-178 1-156 (200)
76 cd01863 Rab18 Rab18 subfamily. 100.0 6.1E-32 1.3E-36 190.2 19.8 159 14-174 1-160 (161)
77 cd01862 Rab7 Rab7 subfamily. 100.0 1.2E-31 2.5E-36 190.6 20.4 165 14-179 1-170 (172)
78 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.1E-31 2.4E-36 191.0 20.2 157 14-173 1-171 (173)
79 cd04135 Tc10 TC10 subfamily. 100.0 1.2E-31 2.7E-36 190.9 20.5 159 14-175 1-173 (174)
80 cd04103 Centaurin_gamma Centau 100.0 7.4E-32 1.6E-36 188.8 18.6 154 14-174 1-157 (158)
81 cd04177 RSR1 RSR1 subgroup. R 100.0 1.4E-31 3E-36 189.6 20.2 161 14-176 2-164 (168)
82 cd04148 RGK RGK subfamily. Th 100.0 1.2E-31 2.5E-36 197.5 20.3 165 14-181 1-168 (221)
83 cd04143 Rhes_like Rhes_like su 100.0 9.5E-32 2.1E-36 200.3 19.5 161 14-176 1-171 (247)
84 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.3E-31 2.8E-36 189.1 19.1 159 14-175 1-163 (164)
85 cd01892 Miro2 Miro2 subfamily. 100.0 1.2E-31 2.6E-36 190.0 18.8 163 11-177 2-167 (169)
86 KOG0097 GTPase Rab14, small G 100.0 6.1E-32 1.3E-36 176.7 15.8 169 10-180 8-177 (215)
87 cd04123 Rab21 Rab21 subfamily. 100.0 4E-31 8.7E-36 186.0 20.1 160 14-175 1-161 (162)
88 cd04146 RERG_RasL11_like RERG/ 100.0 2E-31 4.3E-36 188.3 17.7 160 15-176 1-164 (165)
89 KOG0083 GTPase Rab26/Rab37, sm 100.0 2.4E-33 5.2E-38 181.4 6.7 172 18-191 2-175 (192)
90 cd04147 Ras_dva Ras-dva subfam 100.0 5.3E-31 1.1E-35 191.3 19.7 193 15-210 1-196 (198)
91 cd04129 Rho2 Rho2 subfamily. 100.0 1.2E-30 2.6E-35 187.8 21.2 162 14-178 2-175 (187)
92 cd04114 Rab30 Rab30 subfamily. 100.0 1.5E-30 3.2E-35 184.5 21.1 163 11-175 5-168 (169)
93 cd04139 RalA_RalB RalA/RalB su 100.0 1.1E-30 2.4E-35 184.1 19.9 162 14-177 1-163 (164)
94 cd04149 Arf6 Arf6 subfamily. 100.0 2.2E-31 4.7E-36 188.5 15.4 155 12-173 8-167 (168)
95 cd00154 Rab Rab family. Rab G 100.0 1.3E-30 2.8E-35 182.5 18.6 157 14-172 1-158 (159)
96 cd04158 ARD1 ARD1 subfamily. 100.0 7.3E-31 1.6E-35 186.1 16.9 160 15-181 1-166 (169)
97 cd01870 RhoA_like RhoA-like su 100.0 4E-30 8.6E-35 183.3 20.4 159 14-175 2-174 (175)
98 PLN00223 ADP-ribosylation fact 100.0 8.3E-31 1.8E-35 187.5 16.8 161 11-178 15-180 (181)
99 KOG0395 Ras-related GTPase [Ge 100.0 1.4E-30 2.9E-35 187.0 17.9 168 12-181 2-170 (196)
100 smart00177 ARF ARF-like small 100.0 2.1E-31 4.5E-36 189.8 13.6 159 11-176 11-174 (175)
101 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.7E-31 3.7E-36 187.4 12.6 153 14-173 1-158 (159)
102 PTZ00133 ADP-ribosylation fact 100.0 4.8E-31 1E-35 188.9 13.6 161 11-178 15-180 (182)
103 cd00876 Ras Ras family. The R 100.0 4.1E-30 8.8E-35 180.5 18.1 158 15-174 1-159 (160)
104 cd04137 RheB Rheb (Ras Homolog 100.0 8.7E-30 1.9E-34 182.4 19.8 165 14-180 2-167 (180)
105 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.2E-30 2.7E-35 187.1 15.2 164 13-179 3-173 (183)
106 cd00157 Rho Rho (Ras homology) 100.0 9.8E-30 2.1E-34 180.5 19.7 157 14-173 1-170 (171)
107 cd04154 Arl2 Arl2 subfamily. 100.0 3.8E-30 8.3E-35 183.1 15.9 157 10-173 11-172 (173)
108 cd01893 Miro1 Miro1 subfamily. 100.0 1.5E-29 3.3E-34 178.9 18.4 161 14-177 1-165 (166)
109 KOG0393 Ras-related small GTPa 100.0 2.7E-30 5.9E-35 181.5 14.0 167 11-180 2-183 (198)
110 PTZ00132 GTP-binding nuclear p 100.0 1.8E-28 3.8E-33 180.3 21.7 171 8-183 4-175 (215)
111 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 4E-30 8.6E-35 181.3 11.6 152 15-173 1-163 (164)
112 KOG0073 GTP-binding ADP-ribosy 100.0 7.2E-29 1.6E-33 166.0 15.1 166 8-178 11-180 (185)
113 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 5.2E-29 1.1E-33 177.3 15.4 155 12-173 14-173 (174)
114 cd04151 Arl1 Arl1 subfamily. 100.0 2.9E-29 6.3E-34 176.0 12.6 152 15-173 1-157 (158)
115 cd04157 Arl6 Arl6 subfamily. 100.0 3.8E-29 8.3E-34 176.0 12.6 153 15-173 1-161 (162)
116 PF00025 Arf: ADP-ribosylation 100.0 2.7E-28 5.8E-33 173.5 16.8 159 10-175 11-175 (175)
117 cd00879 Sar1 Sar1 subfamily. 100.0 1.2E-28 2.6E-33 178.0 15.2 157 11-174 17-189 (190)
118 cd04156 ARLTS1 ARLTS1 subfamil 100.0 8.3E-29 1.8E-33 174.0 13.7 153 15-173 1-159 (160)
119 cd04102 RabL3 RabL3 (Rab-like3 100.0 4.1E-28 8.9E-33 175.3 17.0 148 14-162 1-176 (202)
120 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.4E-28 3E-33 172.6 13.5 152 15-173 1-157 (158)
121 cd04161 Arl2l1_Arl13_like Arl2 100.0 7.5E-29 1.6E-33 175.4 11.6 154 15-173 1-166 (167)
122 cd04160 Arfrp1 Arfrp1 subfamil 100.0 6.2E-28 1.3E-32 170.7 14.8 152 15-173 1-166 (167)
123 smart00178 SAR Sar1p-like memb 100.0 9.6E-28 2.1E-32 172.2 15.5 157 11-174 15-183 (184)
124 PTZ00099 rab6; Provisional 100.0 4.6E-27 9.9E-32 167.0 18.7 141 39-181 7-147 (176)
125 KOG4252 GTP-binding protein [S 100.0 1.5E-29 3.2E-34 171.8 3.2 175 4-181 11-186 (246)
126 PLN00023 GTP-binding protein; 100.0 7.4E-27 1.6E-31 176.7 17.2 144 7-151 15-189 (334)
127 cd04155 Arl3 Arl3 subfamily. 99.9 1.7E-26 3.7E-31 164.3 15.1 153 11-173 12-172 (173)
128 cd01890 LepA LepA subfamily. 99.9 2.3E-26 5E-31 164.5 14.8 153 15-175 2-176 (179)
129 cd04159 Arl10_like Arl10-like 99.9 1.6E-26 3.4E-31 161.8 13.1 151 16-173 2-158 (159)
130 cd01897 NOG NOG1 is a nucleola 99.9 9.2E-26 2E-30 159.7 15.9 155 15-175 2-167 (168)
131 PRK15494 era GTPase Era; Provi 99.9 7.4E-26 1.6E-30 176.0 15.7 175 11-194 50-234 (339)
132 TIGR00436 era GTP-binding prot 99.9 7.3E-26 1.6E-30 171.5 15.2 170 15-192 2-180 (270)
133 PRK12299 obgE GTPase CgtA; Rev 99.9 1.4E-25 3.1E-30 173.3 16.3 162 14-178 159-330 (335)
134 TIGR00231 small_GTP small GTP- 99.9 5.1E-25 1.1E-29 153.9 17.6 158 13-172 1-160 (161)
135 KOG0070 GTP-binding ADP-ribosy 99.9 3.7E-26 8E-31 156.9 11.2 166 8-178 12-180 (181)
136 cd01898 Obg Obg subfamily. Th 99.9 9.1E-26 2E-30 160.0 13.4 156 15-174 2-169 (170)
137 KOG3883 Ras family small GTPas 99.9 6.8E-25 1.5E-29 145.4 16.4 170 10-180 6-179 (198)
138 cd01878 HflX HflX subfamily. 99.9 2.9E-25 6.2E-30 162.1 14.2 156 11-175 39-204 (204)
139 TIGR02528 EutP ethanolamine ut 99.9 2.9E-25 6.4E-30 152.9 11.5 134 15-172 2-141 (142)
140 cd04171 SelB SelB subfamily. 99.9 1.9E-24 4.2E-29 152.2 15.3 151 14-173 1-163 (164)
141 COG1100 GTPase SAR1 and relate 99.9 5.8E-24 1.2E-28 156.8 18.0 169 13-182 5-191 (219)
142 PRK04213 GTP-binding protein; 99.9 5.8E-25 1.2E-29 160.1 12.0 156 10-178 6-194 (201)
143 KOG0075 GTP-binding ADP-ribosy 99.9 1.8E-25 3.9E-30 147.1 6.6 161 12-177 19-183 (186)
144 cd00882 Ras_like_GTPase Ras-li 99.9 1.1E-23 2.4E-28 145.9 16.1 154 18-172 1-156 (157)
145 cd01879 FeoB Ferrous iron tran 99.9 8.5E-24 1.8E-28 148.1 15.4 147 18-175 1-156 (158)
146 KOG1673 Ras GTPases [General f 99.9 3E-24 6.5E-29 142.7 11.6 174 10-186 17-196 (205)
147 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.2E-23 2.6E-28 148.8 15.7 156 15-176 2-166 (168)
148 cd04164 trmE TrmE (MnmE, ThdF, 99.9 8.8E-24 1.9E-28 147.7 14.3 145 14-175 2-156 (157)
149 PF02421 FeoB_N: Ferrous iron 99.9 4E-25 8.7E-30 151.8 7.1 148 14-171 1-156 (156)
150 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.3E-23 2.8E-28 168.1 15.9 153 11-179 201-363 (442)
151 cd01891 TypA_BipA TypA (tyrosi 99.9 7.9E-24 1.7E-28 153.2 13.4 158 14-177 3-189 (194)
152 PRK00089 era GTPase Era; Revie 99.9 1.4E-23 3E-28 161.1 15.0 173 12-190 4-185 (292)
153 TIGR03156 GTP_HflX GTP-binding 99.9 2.5E-23 5.3E-28 162.1 16.0 153 12-174 188-350 (351)
154 PF08477 Miro: Miro-like prote 99.9 1.3E-23 2.8E-28 140.5 12.4 114 15-130 1-119 (119)
155 TIGR02729 Obg_CgtA Obg family 99.9 3.9E-23 8.5E-28 159.7 16.6 159 14-175 158-328 (329)
156 COG1159 Era GTPase [General fu 99.9 1.2E-23 2.6E-28 155.3 12.7 178 11-194 4-190 (298)
157 PRK03003 GTP-binding protein D 99.9 1.4E-23 3E-28 170.3 14.1 164 11-182 209-388 (472)
158 cd01881 Obg_like The Obg-like 99.9 8E-24 1.7E-28 150.8 11.2 154 18-174 1-175 (176)
159 cd01894 EngA1 EngA1 subfamily. 99.9 1.4E-23 3.1E-28 146.7 11.9 145 17-174 1-156 (157)
160 PRK05291 trmE tRNA modificatio 99.9 1.5E-23 3.2E-28 168.6 13.5 148 12-177 214-371 (449)
161 PRK03003 GTP-binding protein D 99.9 1.9E-23 4.1E-28 169.5 14.0 155 12-177 37-200 (472)
162 TIGR03594 GTPase_EngA ribosome 99.9 8.8E-23 1.9E-27 164.6 17.3 164 10-180 169-348 (429)
163 KOG0071 GTP-binding ADP-ribosy 99.9 2.6E-23 5.6E-28 135.9 10.8 159 11-176 15-178 (180)
164 cd01895 EngA2 EngA2 subfamily. 99.9 1.9E-22 4.2E-27 143.1 15.3 154 13-174 2-173 (174)
165 PRK12297 obgE GTPase CgtA; Rev 99.9 2.7E-22 5.8E-27 158.8 17.6 161 15-181 160-332 (424)
166 PRK12298 obgE GTPase CgtA; Rev 99.9 1.3E-22 2.9E-27 159.8 15.4 174 15-191 161-348 (390)
167 PRK00454 engB GTP-binding prot 99.9 2.2E-22 4.7E-27 145.9 15.3 162 7-177 18-195 (196)
168 TIGR01393 lepA GTP-binding pro 99.9 3.4E-22 7.3E-27 165.2 17.8 157 13-177 3-181 (595)
169 PRK12296 obgE GTPase CgtA; Rev 99.9 1.7E-22 3.7E-27 161.9 14.8 166 13-181 159-345 (500)
170 cd00881 GTP_translation_factor 99.9 2.1E-22 4.5E-27 145.0 13.6 155 15-175 1-186 (189)
171 cd04163 Era Era subfamily. Er 99.9 3E-22 6.4E-27 141.1 14.0 156 13-174 3-167 (168)
172 cd01889 SelB_euk SelB subfamil 99.9 2.2E-22 4.7E-27 145.5 13.3 158 14-177 1-187 (192)
173 TIGR03598 GTPase_YsxC ribosome 99.9 2.6E-22 5.7E-27 143.5 12.6 152 5-165 10-179 (179)
174 TIGR00487 IF-2 translation ini 99.9 1.3E-21 2.9E-26 161.0 18.2 155 10-174 84-248 (587)
175 cd01888 eIF2_gamma eIF2-gamma 99.9 4.6E-22 9.9E-27 144.8 13.2 160 14-177 1-200 (203)
176 PRK11058 GTPase HflX; Provisio 99.9 1.3E-21 2.9E-26 155.7 16.8 157 13-177 197-363 (426)
177 PRK15467 ethanolamine utilizat 99.9 3.9E-22 8.4E-27 139.5 12.1 142 15-179 3-150 (158)
178 cd04105 SR_beta Signal recogni 99.9 1.3E-21 2.8E-26 142.3 14.6 119 15-133 2-123 (203)
179 TIGR03594 GTPase_EngA ribosome 99.9 1.1E-21 2.4E-26 158.2 14.5 152 15-177 1-161 (429)
180 KOG0074 GTP-binding ADP-ribosy 99.9 3.5E-22 7.6E-27 130.8 8.8 160 11-174 15-177 (185)
181 PRK00093 GTP-binding protein D 99.9 2.1E-21 4.6E-26 156.8 15.0 162 11-180 171-348 (435)
182 CHL00189 infB translation init 99.9 4E-21 8.6E-26 160.5 16.7 157 10-175 241-409 (742)
183 PRK00093 GTP-binding protein D 99.9 1.4E-21 3.1E-26 157.7 13.7 148 14-174 2-160 (435)
184 TIGR00475 selB selenocysteine- 99.9 3.6E-21 7.8E-26 159.0 16.2 155 14-179 1-169 (581)
185 PF00009 GTP_EFTU: Elongation 99.9 1.2E-21 2.6E-26 141.0 11.3 159 12-176 2-187 (188)
186 KOG0076 GTP-binding ADP-ribosy 99.9 3.7E-22 8E-27 135.2 7.9 161 11-178 15-189 (197)
187 PRK05306 infB translation init 99.9 7E-21 1.5E-25 160.3 17.0 155 9-174 286-450 (787)
188 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 1.4E-21 3.1E-26 134.2 10.2 166 11-181 8-174 (216)
189 PRK05433 GTP-binding protein L 99.9 8.8E-21 1.9E-25 157.0 16.5 160 11-178 5-186 (600)
190 cd00880 Era_like Era (E. coli 99.9 4.2E-21 9.1E-26 134.1 12.2 151 18-174 1-162 (163)
191 PRK09518 bifunctional cytidyla 99.9 6.5E-21 1.4E-25 161.4 15.6 164 11-184 448-629 (712)
192 PRK09554 feoB ferrous iron tra 99.9 1.3E-20 2.7E-25 159.4 17.0 154 13-176 3-168 (772)
193 PRK09518 bifunctional cytidyla 99.9 7.7E-21 1.7E-25 161.0 15.7 155 12-177 274-437 (712)
194 COG1160 Predicted GTPases [Gen 99.9 3.6E-21 7.8E-26 149.7 12.1 152 14-176 4-165 (444)
195 KOG1423 Ras-like GTPase ERA [C 99.9 1.6E-20 3.5E-25 138.5 13.8 178 7-189 66-284 (379)
196 TIGR00437 feoB ferrous iron tr 99.9 9E-21 1.9E-25 156.8 14.0 144 20-175 1-154 (591)
197 PRK12317 elongation factor 1-a 99.9 1.8E-20 3.9E-25 150.7 14.4 156 10-168 3-197 (425)
198 COG0486 ThdF Predicted GTPase 99.9 1.5E-20 3.1E-25 146.7 13.4 156 11-178 215-378 (454)
199 COG1160 Predicted GTPases [Gen 99.8 4E-20 8.6E-25 144.0 15.2 165 12-182 177-357 (444)
200 KOG0072 GTP-binding ADP-ribosy 99.8 3.2E-21 6.9E-26 126.7 6.4 162 12-178 17-181 (182)
201 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.2E-20 4.9E-25 136.4 11.5 148 15-167 1-185 (208)
202 KOG4423 GTP-binding protein-li 99.8 2.1E-22 4.5E-27 137.9 0.6 176 10-186 22-204 (229)
203 COG0218 Predicted GTPase [Gene 99.8 1.4E-19 3E-24 127.1 14.3 167 3-178 14-199 (200)
204 TIGR00483 EF-1_alpha translati 99.8 4.7E-20 1E-24 148.2 13.6 156 10-168 4-199 (426)
205 cd01896 DRG The developmentall 99.8 2.6E-19 5.6E-24 132.7 15.3 152 15-175 2-225 (233)
206 COG2229 Predicted GTPase [Gene 99.8 5.1E-19 1.1E-23 121.6 15.0 155 10-174 7-176 (187)
207 TIGR00491 aIF-2 translation in 99.8 2E-19 4.4E-24 147.9 14.5 156 12-176 3-216 (590)
208 PRK10218 GTP-binding protein; 99.8 7.3E-19 1.6E-23 145.1 16.8 161 12-178 4-197 (607)
209 cd01884 EF_Tu EF-Tu subfamily. 99.8 9.5E-19 2.1E-23 126.1 15.1 146 13-164 2-171 (195)
210 TIGR03680 eif2g_arch translati 99.8 2.8E-19 6.1E-24 142.6 13.3 162 11-176 2-196 (406)
211 PF10662 PduV-EutP: Ethanolami 99.8 4.5E-19 9.8E-24 119.3 11.5 135 15-172 3-142 (143)
212 cd01876 YihA_EngB The YihA (En 99.8 6E-19 1.3E-23 124.5 12.9 151 15-174 1-169 (170)
213 TIGR01394 TypA_BipA GTP-bindin 99.8 4.4E-19 9.6E-24 146.5 13.9 159 14-178 2-193 (594)
214 PRK04000 translation initiatio 99.8 8.2E-19 1.8E-23 139.9 13.9 163 9-176 5-201 (411)
215 cd04168 TetM_like Tet(M)-like 99.8 7.9E-19 1.7E-23 130.3 12.7 112 15-132 1-129 (237)
216 PRK04004 translation initiatio 99.8 1.8E-18 3.9E-23 142.9 15.6 156 11-175 4-217 (586)
217 PRK12736 elongation factor Tu; 99.8 3.7E-18 8E-23 135.7 15.5 161 10-176 9-201 (394)
218 cd01883 EF1_alpha Eukaryotic e 99.8 5.7E-19 1.2E-23 130.0 9.9 147 15-165 1-194 (219)
219 PRK10512 selenocysteinyl-tRNA- 99.8 4.6E-18 1E-22 141.1 16.0 157 14-177 1-167 (614)
220 KOG1707 Predicted Ras related/ 99.8 5.3E-19 1.1E-23 140.4 9.9 174 8-182 4-181 (625)
221 TIGR00485 EF-Tu translation el 99.8 4.9E-18 1.1E-22 135.2 14.7 147 10-162 9-179 (394)
222 cd04167 Snu114p Snu114p subfam 99.8 3E-18 6.4E-23 125.8 12.1 112 15-132 2-136 (213)
223 COG0370 FeoB Fe2+ transport sy 99.8 3.3E-18 7.2E-23 139.0 12.9 157 13-179 3-167 (653)
224 PRK12735 elongation factor Tu; 99.8 9.2E-18 2E-22 133.6 15.3 160 10-175 9-202 (396)
225 KOG1489 Predicted GTP-binding 99.8 5.4E-18 1.2E-22 125.9 12.8 156 14-174 197-365 (366)
226 COG1084 Predicted GTPase [Gene 99.8 5.8E-18 1.3E-22 126.5 12.9 161 12-179 167-339 (346)
227 CHL00071 tufA elongation facto 99.8 2E-17 4.3E-22 132.2 14.5 149 10-164 9-181 (409)
228 cd04165 GTPBP1_like GTPBP1-lik 99.8 2.3E-17 4.9E-22 121.4 13.0 152 15-172 1-219 (224)
229 cd04104 p47_IIGP_like p47 (47- 99.8 2.5E-17 5.5E-22 119.3 12.5 159 13-180 1-188 (197)
230 COG2262 HflX GTPases [General 99.7 5.7E-17 1.2E-21 124.7 14.5 160 11-179 190-359 (411)
231 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 3.2E-17 7E-22 120.1 11.9 168 15-184 1-184 (232)
232 PRK05124 cysN sulfate adenylyl 99.7 4.2E-17 9.2E-22 132.1 12.9 154 9-167 23-216 (474)
233 cd01850 CDC_Septin CDC/Septin. 99.7 2.9E-16 6.2E-21 119.0 15.8 143 12-161 3-187 (276)
234 cd04169 RF3 RF3 subfamily. Pe 99.7 7.7E-17 1.7E-21 121.6 12.4 115 14-134 3-138 (267)
235 PLN03126 Elongation factor Tu; 99.7 1.7E-16 3.8E-21 128.1 15.1 148 10-163 78-249 (478)
236 TIGR02034 CysN sulfate adenyly 99.7 3.9E-17 8.5E-22 130.3 11.3 148 14-166 1-187 (406)
237 KOG0077 Vesicle coat complex C 99.7 1.1E-17 2.3E-22 112.8 6.7 156 12-174 19-191 (193)
238 PLN03127 Elongation factor Tu; 99.7 2.7E-16 5.9E-21 126.4 16.1 161 10-176 58-252 (447)
239 PRK00049 elongation factor Tu; 99.7 3E-16 6.4E-21 124.9 16.2 146 11-162 10-179 (396)
240 PLN00043 elongation factor 1-a 99.7 7.8E-17 1.7E-21 129.6 12.6 151 10-166 4-203 (447)
241 PRK00741 prfC peptide chain re 99.7 6.9E-17 1.5E-21 132.0 12.4 117 10-132 7-144 (526)
242 cd01885 EF2 EF2 (for archaea a 99.7 2E-16 4.3E-21 116.0 13.6 112 15-132 2-138 (222)
243 COG0536 Obg Predicted GTPase [ 99.7 1.9E-16 4.2E-21 119.0 13.0 164 15-180 161-337 (369)
244 PRK13351 elongation factor G; 99.7 9.3E-17 2E-21 136.2 12.0 119 9-133 4-139 (687)
245 KOG1191 Mitochondrial GTPase [ 99.7 4.6E-17 1E-21 127.3 9.3 167 12-180 267-454 (531)
246 cd01886 EF-G Elongation factor 99.7 1.9E-16 4.1E-21 119.5 12.1 114 15-134 1-131 (270)
247 COG0532 InfB Translation initi 99.7 8.5E-16 1.9E-20 121.9 15.6 158 11-178 3-172 (509)
248 PTZ00141 elongation factor 1- 99.7 3.3E-16 7.2E-21 126.0 13.3 151 11-166 5-203 (446)
249 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.1E-15 2.4E-20 110.8 14.6 162 14-180 1-188 (196)
250 cd04170 EF-G_bact Elongation f 99.7 2.8E-16 6E-21 119.2 11.9 152 15-174 1-171 (268)
251 COG1163 DRG Predicted GTPase [ 99.7 1.6E-15 3.4E-20 113.4 14.8 158 11-176 61-289 (365)
252 PRK05506 bifunctional sulfate 99.7 2.1E-16 4.5E-21 132.8 11.2 153 9-166 20-211 (632)
253 PF01926 MMR_HSR1: 50S ribosom 99.7 3.2E-16 6.8E-21 104.1 9.2 105 15-128 1-116 (116)
254 KOG0462 Elongation factor-type 99.7 1.8E-15 3.9E-20 119.8 14.7 168 9-182 56-241 (650)
255 cd01899 Ygr210 Ygr210 subfamil 99.7 1.8E-15 3.9E-20 116.4 13.5 163 16-182 1-275 (318)
256 PF09439 SRPRB: Signal recogni 99.7 1.4E-16 3.1E-21 111.9 6.7 119 13-134 3-127 (181)
257 KOG1145 Mitochondrial translat 99.7 4.3E-15 9.4E-20 117.7 14.7 159 8-177 148-317 (683)
258 KOG3905 Dynein light intermedi 99.7 4.2E-15 9E-20 111.1 13.7 165 14-180 53-294 (473)
259 COG3596 Predicted GTPase [Gene 99.7 6.3E-16 1.4E-20 113.2 8.7 164 8-178 34-224 (296)
260 TIGR00503 prfC peptide chain r 99.7 3.2E-16 6.9E-21 128.1 7.9 120 9-134 7-147 (527)
261 PRK09602 translation-associate 99.6 7E-15 1.5E-19 116.3 14.9 65 118-186 216-281 (396)
262 PRK12739 elongation factor G; 99.6 5.1E-15 1.1E-19 125.5 15.0 118 10-133 5-139 (691)
263 COG5256 TEF1 Translation elong 99.6 2.4E-15 5.2E-20 115.9 11.1 156 11-167 5-202 (428)
264 PTZ00327 eukaryotic translatio 99.6 4E-15 8.7E-20 119.5 12.6 161 11-176 32-233 (460)
265 PF05783 DLIC: Dynein light in 99.6 1.7E-14 3.6E-19 115.8 16.1 168 12-181 24-269 (472)
266 TIGR00484 EF-G translation elo 99.6 4.5E-15 9.8E-20 125.8 13.2 121 9-135 6-143 (689)
267 KOG1532 GTPase XAB1, interacts 99.6 2E-15 4.4E-20 110.3 7.3 178 9-190 15-278 (366)
268 PRK09866 hypothetical protein; 99.6 1E-13 2.2E-18 113.0 16.1 109 61-173 230-350 (741)
269 COG0481 LepA Membrane GTPase L 99.6 6.3E-14 1.4E-18 109.6 13.7 163 9-179 5-189 (603)
270 KOG1490 GTP-binding protein CR 99.6 7.3E-15 1.6E-19 115.4 7.9 163 12-178 167-343 (620)
271 KOG0090 Signal recognition par 99.6 3E-14 6.6E-19 100.4 10.0 156 14-174 39-237 (238)
272 PRK00007 elongation factor G; 99.6 5.7E-14 1.2E-18 119.1 13.7 121 9-135 6-143 (693)
273 TIGR00991 3a0901s02IAP34 GTP-b 99.6 7.5E-14 1.6E-18 105.7 12.4 126 10-138 35-172 (313)
274 PRK12740 elongation factor G; 99.6 3.6E-14 7.9E-19 120.3 11.0 108 19-132 1-125 (668)
275 COG4917 EutP Ethanolamine util 99.6 2.4E-14 5.1E-19 92.4 7.5 136 15-173 3-143 (148)
276 cd01853 Toc34_like Toc34-like 99.5 8.4E-14 1.8E-18 103.8 11.6 125 8-134 26-164 (249)
277 PRK13768 GTPase; Provisional 99.5 7.5E-14 1.6E-18 104.7 10.1 115 62-177 98-248 (253)
278 TIGR00490 aEF-2 translation el 99.5 8.4E-14 1.8E-18 118.5 10.2 116 11-132 17-151 (720)
279 KOG0461 Selenocysteine-specifi 99.5 9E-13 1.9E-17 99.6 13.8 162 14-181 8-198 (522)
280 PF04548 AIG1: AIG1 family; I 99.5 3E-13 6.5E-18 99.1 10.9 163 14-182 1-192 (212)
281 TIGR00101 ureG urease accessor 99.5 8.7E-13 1.9E-17 95.4 12.4 101 61-176 92-196 (199)
282 KOG0458 Elongation factor 1 al 99.5 6.6E-13 1.4E-17 106.2 12.0 169 8-180 172-387 (603)
283 PRK14845 translation initiatio 99.5 9E-13 1.9E-17 114.3 13.6 143 25-176 473-673 (1049)
284 PTZ00258 GTP-binding protein; 99.5 1E-12 2.2E-17 103.2 12.6 84 11-95 19-126 (390)
285 TIGR00157 ribosome small subun 99.5 6.7E-13 1.4E-17 99.1 9.9 96 72-173 24-120 (245)
286 COG1217 TypA Predicted membran 99.5 1.8E-12 4E-17 101.3 12.6 162 12-179 4-198 (603)
287 TIGR02836 spore_IV_A stage IV 99.4 5.1E-12 1.1E-16 98.4 14.7 160 12-178 16-236 (492)
288 COG2895 CysN GTPases - Sulfate 99.4 2.3E-12 5.1E-17 97.5 12.1 152 10-166 3-193 (431)
289 TIGR00073 hypB hydrogenase acc 99.4 1.2E-12 2.5E-17 95.7 10.3 153 9-174 18-205 (207)
290 cd00066 G-alpha G protein alph 99.4 1E-11 2.2E-16 96.2 15.1 119 59-178 159-313 (317)
291 PLN00116 translation elongatio 99.4 8.3E-13 1.8E-17 114.1 9.1 118 9-132 15-163 (843)
292 PF03029 ATP_bind_1: Conserved 99.4 1.6E-13 3.5E-18 101.7 4.0 113 62-175 92-236 (238)
293 PTZ00416 elongation factor 2; 99.4 9.7E-13 2.1E-17 113.5 9.2 117 10-132 16-157 (836)
294 COG5257 GCD11 Translation init 99.4 4.5E-12 9.8E-17 94.9 10.6 182 11-200 8-226 (415)
295 cd01882 BMS1 Bms1. Bms1 is an 99.4 1.1E-11 2.4E-16 91.6 12.4 140 10-163 36-183 (225)
296 PRK09601 GTP-binding protein Y 99.4 1.7E-11 3.8E-16 95.3 14.0 81 14-95 3-107 (364)
297 PRK07560 elongation factor EF- 99.4 7.6E-12 1.7E-16 106.9 13.1 116 11-132 18-152 (731)
298 KOG1707 Predicted Ras related/ 99.4 3.3E-11 7.3E-16 96.6 15.5 165 7-179 419-586 (625)
299 smart00010 small_GTPase Small 99.4 1E-11 2.2E-16 83.1 10.4 113 14-165 1-115 (124)
300 smart00275 G_alpha G protein a 99.4 3.9E-11 8.4E-16 93.7 15.0 117 61-178 184-336 (342)
301 PRK09435 membrane ATPase/prote 99.4 9.2E-12 2E-16 96.1 10.8 153 11-176 54-260 (332)
302 KOG1144 Translation initiation 99.3 1E-11 2.2E-16 101.9 10.8 159 8-176 470-687 (1064)
303 COG0480 FusA Translation elong 99.3 1.5E-11 3.2E-16 103.1 11.1 118 10-133 7-142 (697)
304 PF00735 Septin: Septin; Inte 99.3 5.5E-11 1.2E-15 90.3 13.0 141 13-160 4-185 (281)
305 TIGR00750 lao LAO/AO transport 99.3 3.5E-11 7.5E-16 92.7 10.3 104 60-176 126-238 (300)
306 PF05049 IIGP: Interferon-indu 99.3 2.5E-11 5.4E-16 94.5 9.2 159 11-178 33-220 (376)
307 COG3276 SelB Selenocysteine-sp 99.3 5.8E-11 1.3E-15 92.6 10.7 158 14-176 1-162 (447)
308 COG0050 TufB GTPases - transla 99.3 2.2E-11 4.8E-16 90.3 8.0 143 12-160 11-177 (394)
309 cd01900 YchF YchF subfamily. 99.3 7.7E-11 1.7E-15 88.8 10.9 79 16-95 1-103 (274)
310 KOG3886 GTP-binding protein [S 99.2 1.6E-11 3.4E-16 87.9 6.0 147 13-160 4-163 (295)
311 COG4108 PrfC Peptide chain rel 99.2 1.2E-10 2.5E-15 90.8 10.6 117 9-131 8-145 (528)
312 COG0378 HypB Ni2+-binding GTPa 99.2 1.8E-11 4E-16 85.8 5.6 54 122-175 145-200 (202)
313 PF00350 Dynamin_N: Dynamin fa 99.2 2.2E-10 4.7E-15 80.9 11.1 62 63-129 103-168 (168)
314 TIGR00993 3a0901s04IAP86 chlor 99.2 1.6E-10 3.6E-15 95.0 11.6 121 10-133 115-250 (763)
315 PRK10463 hydrogenase nickel in 99.2 8.2E-12 1.8E-16 94.1 3.0 55 120-174 231-287 (290)
316 COG0012 Predicted GTPase, prob 99.2 1.5E-09 3.3E-14 83.6 14.3 83 13-95 2-108 (372)
317 smart00053 DYNc Dynamin, GTPas 99.2 2.9E-10 6.3E-15 84.1 9.9 69 61-134 125-207 (240)
318 KOG0705 GTPase-activating prot 99.1 3.6E-10 7.9E-15 90.2 8.2 159 12-178 29-191 (749)
319 KOG1954 Endocytosis/signaling 99.1 1.2E-09 2.5E-14 83.7 10.6 126 3-133 48-225 (532)
320 cd04178 Nucleostemin_like Nucl 99.1 4E-10 8.7E-15 79.6 6.5 57 11-70 115-171 (172)
321 KOG1547 Septin CDC10 and relat 99.1 4E-09 8.6E-14 76.3 11.4 156 12-173 45-240 (336)
322 cd01859 MJ1464 MJ1464. This f 99.1 4.7E-10 1E-14 78.3 6.6 96 74-177 2-97 (156)
323 KOG1486 GTP-binding protein DR 99.1 2.3E-08 4.9E-13 73.0 15.3 111 12-124 61-179 (364)
324 KOG2655 Septin family protein 99.1 1.1E-08 2.4E-13 78.9 14.4 142 13-161 21-202 (366)
325 KOG0410 Predicted GTP binding 99.1 2.1E-10 4.5E-15 86.3 4.7 154 10-177 175-342 (410)
326 KOG0468 U5 snRNP-specific prot 99.1 1.8E-09 3.8E-14 88.2 10.3 116 10-131 125-261 (971)
327 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 5.3E-10 1.1E-14 76.7 6.3 54 15-71 85-138 (141)
328 cd01858 NGP_1 NGP-1. Autoanti 99.0 7.1E-10 1.5E-14 77.5 6.9 56 12-70 101-156 (157)
329 PRK00098 GTPase RsgA; Reviewed 99.0 1.4E-09 3.1E-14 83.6 8.9 88 81-173 77-164 (298)
330 cd01855 YqeH YqeH. YqeH is an 99.0 1.9E-09 4.2E-14 77.7 9.1 94 74-176 24-125 (190)
331 PF03308 ArgK: ArgK protein; 99.0 1.7E-10 3.7E-15 84.8 3.4 151 12-175 28-229 (266)
332 COG1703 ArgK Putative periplas 99.0 2.6E-09 5.7E-14 79.8 9.5 152 12-176 50-254 (323)
333 COG5019 CDC3 Septin family pro 99.0 1.3E-08 2.9E-13 78.1 13.4 137 12-155 22-200 (373)
334 KOG2486 Predicted GTPase [Gene 99.0 7.9E-10 1.7E-14 81.5 6.3 157 9-174 132-314 (320)
335 PRK12289 GTPase RsgA; Reviewed 99.0 2.8E-09 6.2E-14 83.3 9.2 92 76-174 81-173 (352)
336 KOG0082 G-protein alpha subuni 99.0 3.1E-08 6.8E-13 76.5 13.8 128 49-179 185-347 (354)
337 cd01854 YjeQ_engC YjeQ/EngC. 98.9 6.4E-09 1.4E-13 79.6 9.0 88 79-173 73-161 (287)
338 cd01856 YlqF YlqF. Proteins o 98.9 4.2E-09 9.1E-14 74.6 6.6 57 12-71 114-170 (171)
339 PRK12288 GTPase RsgA; Reviewed 98.9 1.5E-08 3.2E-13 79.3 10.1 88 82-174 118-206 (347)
340 PRK09563 rbgA GTPase YlqF; Rev 98.9 6.4E-09 1.4E-13 79.7 7.7 58 11-71 119-176 (287)
341 TIGR03596 GTPase_YlqF ribosome 98.9 5E-09 1.1E-13 79.9 7.1 58 11-71 116-173 (276)
342 cd01859 MJ1464 MJ1464. This f 98.9 7.4E-09 1.6E-13 72.2 6.8 56 12-70 100-155 (156)
343 COG1161 Predicted GTPases [Gen 98.9 4.5E-09 9.8E-14 81.5 6.2 57 12-71 131-187 (322)
344 KOG0464 Elongation factor G [T 98.9 1.3E-09 2.8E-14 84.7 2.8 121 8-134 32-169 (753)
345 KOG1487 GTP-binding protein DR 98.8 3.5E-08 7.6E-13 72.3 9.7 88 14-102 60-154 (358)
346 TIGR03597 GTPase_YqeH ribosome 98.8 2.1E-08 4.5E-13 79.2 8.7 95 71-174 50-151 (360)
347 KOG0460 Mitochondrial translat 98.8 1E-07 2.2E-12 72.5 11.9 143 12-159 53-218 (449)
348 cd01855 YqeH YqeH. YqeH is an 98.8 8.9E-09 1.9E-13 74.2 5.7 55 13-70 127-189 (190)
349 KOG3887 Predicted small GTPase 98.8 3E-08 6.4E-13 72.0 8.0 167 14-182 28-208 (347)
350 COG1618 Predicted nucleotide k 98.8 4.4E-07 9.6E-12 62.0 12.7 148 12-177 4-177 (179)
351 cd01849 YlqF_related_GTPase Yl 98.8 1.6E-08 3.6E-13 70.4 6.0 57 11-70 98-154 (155)
352 KOG1424 Predicted GTP-binding 98.7 2.4E-08 5.3E-13 79.5 5.5 62 7-71 308-369 (562)
353 KOG0465 Mitochondrial elongati 98.7 4.1E-08 8.9E-13 79.7 6.7 123 11-139 37-176 (721)
354 cd01858 NGP_1 NGP-1. Autoanti 98.7 1E-07 2.3E-12 66.5 7.6 91 81-176 5-95 (157)
355 cd01849 YlqF_related_GTPase Yl 98.7 1.2E-07 2.5E-12 66.1 7.5 84 86-175 1-84 (155)
356 KOG0467 Translation elongation 98.7 1.2E-07 2.6E-12 78.8 8.1 119 7-131 3-136 (887)
357 COG5258 GTPBP1 GTPase [General 98.6 4.9E-07 1.1E-11 70.0 10.8 158 9-172 113-335 (527)
358 PRK10416 signal recognition pa 98.6 5.5E-07 1.2E-11 69.8 10.3 143 12-168 113-302 (318)
359 cd01851 GBP Guanylate-binding 98.6 1.1E-06 2.4E-11 64.9 11.5 89 11-100 5-107 (224)
360 KOG0466 Translation initiation 98.6 7.6E-08 1.7E-12 72.2 5.1 164 11-182 36-247 (466)
361 KOG0448 Mitofusin 1 GTPase, in 98.6 1.2E-06 2.7E-11 72.2 12.3 144 11-160 107-310 (749)
362 KOG0447 Dynamin-like GTP bindi 98.6 1.4E-06 2.9E-11 70.5 12.2 135 9-147 304-507 (980)
363 KOG1143 Predicted translation 98.6 2.7E-07 5.8E-12 71.2 7.9 152 12-169 166-381 (591)
364 KOG1491 Predicted GTP-binding 98.6 2.3E-07 5E-12 70.6 7.2 85 12-96 19-126 (391)
365 PRK12289 GTPase RsgA; Reviewed 98.6 1.2E-07 2.5E-12 74.4 5.9 56 16-74 175-237 (352)
366 PRK12288 GTPase RsgA; Reviewed 98.6 1.3E-07 2.7E-12 74.2 6.0 57 16-75 208-271 (347)
367 PF09547 Spore_IV_A: Stage IV 98.6 9.4E-06 2E-10 64.1 16.0 161 12-179 16-237 (492)
368 TIGR00092 GTP-binding protein 98.6 2.5E-07 5.3E-12 72.5 7.4 82 14-95 3-108 (368)
369 TIGR00064 ftsY signal recognit 98.6 4.9E-07 1.1E-11 68.6 8.6 97 59-169 153-261 (272)
370 COG5192 BMS1 GTP-binding prote 98.5 8.8E-07 1.9E-11 71.9 10.0 135 11-159 67-209 (1077)
371 PF03193 DUF258: Protein of un 98.5 8E-08 1.7E-12 66.6 3.7 58 14-74 36-100 (161)
372 PRK14974 cell division protein 98.5 3.5E-07 7.5E-12 71.2 7.2 95 61-169 223-323 (336)
373 PRK13796 GTPase YqeH; Provisio 98.5 1.7E-07 3.7E-12 74.1 5.5 55 14-71 161-220 (365)
374 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 4E-07 8.7E-12 62.4 6.6 77 80-162 7-83 (141)
375 TIGR03597 GTPase_YqeH ribosome 98.5 2.9E-07 6.2E-12 72.8 6.5 56 14-72 155-215 (360)
376 cd01856 YlqF YlqF. Proteins o 98.5 2.8E-07 6E-12 65.3 5.7 91 76-176 11-101 (171)
377 TIGR00157 ribosome small subun 98.5 3.2E-07 6.9E-12 68.7 5.9 56 15-74 122-184 (245)
378 TIGR03596 GTPase_YlqF ribosome 98.5 7.4E-07 1.6E-11 68.0 7.8 92 77-178 14-105 (276)
379 cd03112 CobW_like The function 98.4 1.1E-06 2.3E-11 61.4 7.5 21 16-36 3-23 (158)
380 TIGR03348 VI_IcmF type VI secr 98.4 1.9E-06 4E-11 77.8 10.1 111 16-133 114-257 (1169)
381 PF03266 NTPase_1: NTPase; In 98.4 2.2E-06 4.8E-11 60.4 7.7 135 15-164 1-163 (168)
382 KOG0463 GTP-binding protein GP 98.4 3.1E-06 6.6E-11 65.6 8.8 155 12-176 132-357 (641)
383 PRK13796 GTPase YqeH; Provisio 98.4 2.8E-06 6.2E-11 67.3 9.0 84 83-175 67-158 (365)
384 PRK01889 GTPase RsgA; Reviewed 98.4 2.7E-06 5.9E-11 67.1 8.8 84 82-172 110-193 (356)
385 PRK09563 rbgA GTPase YlqF; Rev 98.4 1.7E-06 3.7E-11 66.4 7.3 92 77-178 17-108 (287)
386 KOG3859 Septins (P-loop GTPase 98.3 2.3E-06 5E-11 63.6 7.0 59 12-70 41-104 (406)
387 KOG2484 GTPase [General functi 98.3 7E-07 1.5E-11 69.3 4.1 61 8-71 247-307 (435)
388 PRK00098 GTPase RsgA; Reviewed 98.3 1.8E-06 3.9E-11 66.6 6.1 56 15-73 166-228 (298)
389 COG1162 Predicted GTPases [Gen 98.3 1.8E-06 3.8E-11 65.4 5.6 58 15-75 166-230 (301)
390 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2.3E-06 4.9E-11 65.7 6.0 59 14-75 162-227 (287)
391 KOG4273 Uncharacterized conser 98.3 4.3E-05 9.3E-10 56.2 12.0 157 13-176 4-222 (418)
392 PRK13695 putative NTPase; Prov 98.2 6.2E-05 1.3E-09 53.4 12.7 80 82-176 94-173 (174)
393 TIGR01425 SRP54_euk signal rec 98.2 2E-05 4.3E-10 63.2 10.5 134 12-157 99-273 (429)
394 PF00503 G-alpha: G-protein al 98.2 1.4E-05 2.9E-10 64.2 9.1 125 49-175 225-389 (389)
395 KOG0459 Polypeptide release fa 98.1 3.2E-06 6.9E-11 65.9 4.7 158 10-169 76-279 (501)
396 KOG2485 Conserved ATP/GTP bind 98.1 3.2E-06 6.9E-11 63.8 4.0 60 11-71 141-206 (335)
397 COG1162 Predicted GTPases [Gen 98.1 4.7E-05 1E-09 57.9 9.8 94 77-174 72-165 (301)
398 TIGR00959 ffh signal recogniti 98.1 2.9E-05 6.4E-10 62.5 9.2 87 60-158 182-274 (428)
399 PRK14722 flhF flagellar biosyn 98.1 4.4E-05 9.6E-10 60.3 10.0 141 13-157 137-315 (374)
400 KOG0099 G protein subunit Galp 98.1 7.8E-06 1.7E-10 60.4 5.3 66 61-131 202-281 (379)
401 PRK00771 signal recognition pa 98.1 3.3E-05 7.2E-10 62.4 9.4 136 11-158 93-267 (437)
402 PF00448 SRP54: SRP54-type pro 98.1 1.1E-05 2.3E-10 58.4 6.0 132 14-157 2-174 (196)
403 cd03115 SRP The signal recogni 98.1 2.2E-05 4.7E-10 55.7 7.5 84 60-155 82-171 (173)
404 PRK14721 flhF flagellar biosyn 98.0 2.4E-05 5.2E-10 62.7 8.0 138 12-164 190-365 (420)
405 PRK10867 signal recognition pa 98.0 1.4E-05 3E-10 64.4 6.4 87 60-158 183-275 (433)
406 COG3523 IcmF Type VI protein s 98.0 2.7E-05 5.8E-10 69.3 8.2 114 16-134 128-271 (1188)
407 PF02492 cobW: CobW/HypB/UreG, 98.0 1.2E-05 2.7E-10 57.3 4.9 83 60-150 84-171 (178)
408 PRK11537 putative GTP-binding 98.0 7.4E-05 1.6E-09 58.1 9.2 85 61-156 91-185 (318)
409 COG1419 FlhF Flagellar GTP-bin 98.0 0.00011 2.4E-09 58.0 10.2 157 13-181 203-399 (407)
410 PRK12727 flagellar biosynthesi 98.0 9.3E-05 2E-09 60.7 9.9 131 13-157 350-518 (559)
411 COG0523 Putative GTPases (G3E 97.9 0.00018 3.9E-09 55.9 10.9 95 61-165 85-190 (323)
412 PRK11889 flhF flagellar biosyn 97.9 8.7E-05 1.9E-09 58.8 8.3 133 13-157 241-411 (436)
413 cd03114 ArgK-like The function 97.9 7.1E-05 1.5E-09 51.7 6.9 58 60-130 91-148 (148)
414 KOG0085 G protein subunit Galp 97.8 2.5E-05 5.4E-10 56.8 4.4 122 57-179 195-352 (359)
415 PF11111 CENP-M: Centromere pr 97.8 0.0046 9.9E-08 43.2 14.7 146 5-176 7-153 (176)
416 KOG2423 Nucleolar GTPase [Gene 97.8 8.5E-06 1.8E-10 63.5 1.2 83 11-99 305-389 (572)
417 cd02038 FleN-like FleN is a me 97.8 9.8E-05 2.1E-09 50.4 6.3 106 17-131 4-109 (139)
418 KOG1534 Putative transcription 97.7 0.00043 9.2E-09 49.8 8.9 112 62-176 99-251 (273)
419 PRK14723 flhF flagellar biosyn 97.7 0.00025 5.3E-09 60.8 9.1 139 14-164 186-362 (767)
420 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.00038 8.3E-09 43.9 7.8 69 16-97 2-71 (99)
421 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00028 6.1E-09 39.7 5.8 44 84-130 13-58 (58)
422 PRK05703 flhF flagellar biosyn 97.7 0.00025 5.4E-09 57.4 8.0 84 61-157 300-391 (424)
423 KOG0469 Elongation factor 2 [T 97.7 8.1E-05 1.8E-09 60.0 5.1 112 12-131 18-162 (842)
424 cd02042 ParA ParA and ParB of 97.6 0.00027 5.9E-09 45.5 6.6 79 16-105 2-81 (104)
425 TIGR02475 CobW cobalamin biosy 97.6 0.00049 1.1E-08 54.1 8.6 21 16-36 7-27 (341)
426 PRK12726 flagellar biosynthesi 97.6 0.00032 7E-09 55.4 7.2 133 12-157 205-376 (407)
427 PRK12724 flagellar biosynthesi 97.6 0.00042 9.2E-09 55.5 7.9 133 13-157 223-393 (432)
428 cd00009 AAA The AAA+ (ATPases 97.6 0.00056 1.2E-08 46.4 7.6 26 13-38 19-44 (151)
429 PF05621 TniB: Bacterial TniB 97.6 0.00032 6.8E-09 53.5 6.8 107 8-128 56-189 (302)
430 PRK06995 flhF flagellar biosyn 97.5 0.00049 1.1E-08 56.3 8.1 150 14-177 257-448 (484)
431 COG0563 Adk Adenylate kinase a 97.5 8.2E-05 1.8E-09 52.9 3.0 23 14-36 1-23 (178)
432 PRK14737 gmk guanylate kinase; 97.5 8.3E-05 1.8E-09 53.3 3.0 24 14-37 5-28 (186)
433 PRK08118 topology modulation p 97.5 9.3E-05 2E-09 52.2 3.2 23 14-36 2-24 (167)
434 PF13207 AAA_17: AAA domain; P 97.5 0.0001 2.2E-09 48.9 3.2 22 15-36 1-22 (121)
435 COG3640 CooC CO dehydrogenase 97.5 0.00086 1.9E-08 49.1 8.0 61 62-131 135-197 (255)
436 COG0194 Gmk Guanylate kinase [ 97.5 6.7E-05 1.5E-09 52.9 1.9 47 14-61 5-51 (191)
437 PRK07261 topology modulation p 97.4 0.00012 2.7E-09 51.8 3.1 23 14-36 1-23 (171)
438 PRK12723 flagellar biosynthesi 97.4 0.0023 4.9E-08 51.2 10.5 139 12-164 173-351 (388)
439 PRK14738 gmk guanylate kinase; 97.4 0.00018 3.8E-09 52.6 4.0 27 10-36 10-36 (206)
440 PF13671 AAA_33: AAA domain; P 97.4 0.00013 2.8E-09 49.8 2.9 21 16-36 2-22 (143)
441 KOG3929 Uncharacterized conser 97.4 6.4E-05 1.4E-09 55.5 0.8 163 11-175 43-251 (363)
442 PF13521 AAA_28: AAA domain; P 97.3 0.00013 2.9E-09 51.1 2.4 22 15-36 1-22 (163)
443 PF13555 AAA_29: P-loop contai 97.3 0.00024 5.2E-09 40.9 2.9 24 15-38 25-48 (62)
444 PRK06731 flhF flagellar biosyn 97.3 0.001 2.2E-08 50.5 7.1 131 14-157 76-245 (270)
445 KOG1533 Predicted GTPase [Gene 97.3 0.00042 9.2E-09 50.6 4.5 21 14-34 3-23 (290)
446 cd02019 NK Nucleoside/nucleoti 97.3 0.00027 5.8E-09 42.0 3.0 21 16-36 2-22 (69)
447 cd03222 ABC_RNaseL_inhibitor T 97.3 0.0033 7.1E-08 44.8 9.0 23 15-37 27-49 (177)
448 PF00005 ABC_tran: ABC transpo 97.3 0.00024 5.3E-09 48.1 3.1 23 15-37 13-35 (137)
449 COG1116 TauB ABC-type nitrate/ 97.3 0.00021 4.6E-09 52.7 2.9 23 16-38 32-54 (248)
450 COG1126 GlnQ ABC-type polar am 97.3 0.00021 4.6E-09 51.6 2.8 24 15-38 30-53 (240)
451 KOG1970 Checkpoint RAD17-RFC c 97.3 0.0016 3.4E-08 53.4 7.9 45 86-131 195-239 (634)
452 cd04178 Nucleostemin_like Nucl 97.3 0.00078 1.7E-08 47.7 5.4 44 86-133 1-44 (172)
453 KOG0780 Signal recognition par 97.3 0.00041 9E-09 54.3 4.2 101 12-112 100-241 (483)
454 PRK04195 replication factor C 97.2 0.0032 7E-08 52.1 9.7 25 13-37 39-63 (482)
455 cd03111 CpaE_like This protein 97.2 0.0016 3.4E-08 42.2 6.3 100 19-128 6-106 (106)
456 cd01131 PilT Pilus retraction 97.2 0.00095 2.1E-08 48.4 5.8 22 16-37 4-25 (198)
457 PRK01889 GTPase RsgA; Reviewed 97.2 0.00032 7E-09 55.5 3.6 25 14-38 196-220 (356)
458 PF00004 AAA: ATPase family as 97.2 0.00033 7.1E-09 47.0 3.0 22 16-37 1-22 (132)
459 PF03215 Rad17: Rad17 cell cyc 97.2 0.0038 8.2E-08 51.9 9.6 23 15-37 47-69 (519)
460 PF03205 MobB: Molybdopterin g 97.2 0.00038 8.1E-09 47.6 3.2 23 15-37 2-24 (140)
461 COG0552 FtsY Signal recognitio 97.2 0.00068 1.5E-08 52.2 4.7 143 11-168 137-327 (340)
462 cd03110 Fer4_NifH_child This p 97.2 0.0038 8.2E-08 44.4 8.4 85 59-154 91-175 (179)
463 PRK03839 putative kinase; Prov 97.2 0.00036 7.7E-09 49.8 3.0 22 15-36 2-23 (180)
464 PF04665 Pox_A32: Poxvirus A32 97.2 0.00041 8.9E-09 51.5 3.3 32 7-38 7-38 (241)
465 smart00382 AAA ATPases associa 97.2 0.00042 9.1E-09 46.6 3.2 25 14-38 3-27 (148)
466 PLN02200 adenylate kinase fami 97.2 0.00056 1.2E-08 50.9 4.0 29 7-35 37-65 (234)
467 COG1136 SalX ABC-type antimicr 97.2 0.00036 7.7E-09 51.2 2.9 24 15-38 33-56 (226)
468 PRK06217 hypothetical protein; 97.2 0.00043 9.2E-09 49.6 3.3 23 14-36 2-24 (183)
469 PF13238 AAA_18: AAA domain; P 97.1 0.00041 8.8E-09 46.3 3.0 21 16-36 1-21 (129)
470 cd00071 GMPK Guanosine monopho 97.1 0.00041 9E-09 47.2 3.0 21 16-36 2-22 (137)
471 COG1120 FepC ABC-type cobalami 97.1 0.00037 8E-09 52.2 2.9 20 16-35 31-50 (258)
472 PRK10078 ribose 1,5-bisphospho 97.1 0.00042 9.1E-09 49.7 3.1 22 15-36 4-25 (186)
473 cd02036 MinD Bacterial cell di 97.1 0.006 1.3E-07 43.2 9.0 84 62-154 64-147 (179)
474 COG1161 Predicted GTPases [Gen 97.1 0.00079 1.7E-08 52.6 4.6 94 67-169 16-110 (322)
475 TIGR02322 phosphon_PhnN phosph 97.1 0.00047 1E-08 49.1 3.0 22 15-36 3-24 (179)
476 PF07728 AAA_5: AAA domain (dy 97.1 0.00054 1.2E-08 46.6 3.1 22 15-36 1-22 (139)
477 PRK14530 adenylate kinase; Pro 97.1 0.00052 1.1E-08 50.5 3.2 21 15-35 5-25 (215)
478 TIGR03263 guanyl_kin guanylate 97.1 0.00069 1.5E-08 48.2 3.7 23 15-37 3-25 (180)
479 PRK13949 shikimate kinase; Pro 97.1 0.00056 1.2E-08 48.3 3.2 22 15-36 3-24 (169)
480 cd01130 VirB11-like_ATPase Typ 97.0 0.00059 1.3E-08 49.0 3.2 25 13-37 25-49 (186)
481 TIGR00150 HI0065_YjeE ATPase, 97.0 0.002 4.4E-08 43.4 5.5 23 15-37 24-46 (133)
482 PRK05480 uridine/cytidine kina 97.0 0.00068 1.5E-08 49.6 3.5 25 12-36 5-29 (209)
483 COG3839 MalK ABC-type sugar tr 97.0 0.0005 1.1E-08 53.5 2.9 22 16-37 32-53 (338)
484 cd03238 ABC_UvrA The excision 97.0 0.00065 1.4E-08 48.3 3.1 21 14-34 22-42 (176)
485 PTZ00088 adenylate kinase 1; P 97.0 0.00064 1.4E-08 50.4 3.1 25 12-36 5-29 (229)
486 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00065 1.4E-08 43.9 2.7 21 14-34 16-36 (107)
487 PRK14532 adenylate kinase; Pro 97.0 0.00062 1.4E-08 48.9 3.0 23 14-36 1-23 (188)
488 TIGR00235 udk uridine kinase. 97.0 0.0009 2E-08 48.9 3.8 25 12-36 5-29 (207)
489 cd01129 PulE-GspE PulE/GspE Th 97.0 0.0032 6.9E-08 47.8 6.8 23 15-37 82-104 (264)
490 PRK00625 shikimate kinase; Pro 97.0 0.00069 1.5E-08 48.0 2.9 23 14-36 1-23 (173)
491 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.0 0.00075 1.6E-08 49.7 3.1 23 15-37 32-54 (218)
492 cd02023 UMPK Uridine monophosp 97.0 0.00072 1.6E-08 49.0 3.0 21 16-36 2-22 (198)
493 COG3638 ABC-type phosphate/pho 96.9 0.00072 1.6E-08 49.6 2.8 21 15-35 32-52 (258)
494 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00073 1.6E-08 48.4 2.9 22 14-35 4-25 (188)
495 cd03225 ABC_cobalt_CbiO_domain 96.9 0.00083 1.8E-08 49.2 3.1 23 15-37 29-51 (211)
496 COG4525 TauB ABC-type taurine 96.9 0.00077 1.7E-08 48.2 2.7 22 15-36 33-54 (259)
497 PRK10751 molybdopterin-guanine 96.9 0.00082 1.8E-08 47.4 2.8 24 13-36 6-29 (173)
498 cd03226 ABC_cobalt_CbiO_domain 96.9 0.00087 1.9E-08 48.9 3.1 23 15-37 28-50 (205)
499 TIGR01166 cbiO cobalt transpor 96.9 0.0009 1.9E-08 48.2 3.1 23 15-37 20-42 (190)
500 COG1121 ZnuC ABC-type Mn/Zn tr 96.9 0.00081 1.7E-08 50.2 2.9 21 15-35 32-52 (254)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-43 Score=244.61 Aligned_cols=201 Identities=52% Similarity=0.852 Sum_probs=181.3
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
....++.+||+|+|+.|||||.|+.|+..+.+ ..+..|.|.++....+.++++.+.++||||+|+++++.+...+++++
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 35677999999999999999999999999999 88899999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCc-EEEeccCCCCCH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCL-FLECSAKTRVNV 164 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~v 164 (211)
+++|+|||+++.+||+.+.. |+..+..+. ..++|.++||||+|+.+.+.+..++++.|+..++++ ++++||+++.+|
T Consensus 83 hGii~vyDiT~~~SF~~v~~-Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKR-WIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNV 160 (205)
T ss_pred CeEEEEEEcccHHHhhhHHH-HHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCH
Confidence 99999999999999999999 999999998 788999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCcccC
Q 028292 165 EQCFEELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCCS 210 (211)
Q Consensus 165 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 210 (211)
++.|..|...+..+..........+ .......+.+..+..++||.
T Consensus 161 e~~F~~la~~lk~~~~~~~~~~~~~-~~~~ql~~~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 161 EDAFLTLAKELKQRKGLHVKWSTAS-LESVQLKGTPVKKSNGGCCE 205 (205)
T ss_pred HHHHHHHHHHHHHhcccCCCCCcCC-CCceeeCCCCcccccCCCCC
Confidence 9999999999999888887776533 33333333445555666884
No 2
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.4e-43 Score=233.71 Aligned_cols=203 Identities=65% Similarity=1.069 Sum_probs=186.5
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCC-cceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-TIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
......+||+++|..|+|||+|+.++....++...+ +.|.++.+..+.+++..+.+.||||+|+++|+.+.+.+++++.
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 456688999999999999999999999999955444 5999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (211)
++|+|||++.+++|..+.. |+..+..+..+.++..++|+||.|.+..+.+..++...|++++++.|+++||++.+||+.
T Consensus 86 GiIlVYDVT~Rdtf~kLd~-W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDI-WLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQC 164 (209)
T ss_pred eeEEEEEccchhhHHhHHH-HHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence 9999999999999999955 999999999999999999999999988999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCcccCC
Q 028292 167 CFEELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCCSS 211 (211)
Q Consensus 167 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~~ 211 (211)
.|+.++..+.+-+............++...+..+.....+||||+
T Consensus 165 ~FeelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~~~~g~~Cs~ 209 (209)
T KOG0080|consen 165 CFEELVEKIIETPSLWEEGNSSAGLDIASDPDGEASAHQGGCCSC 209 (209)
T ss_pred HHHHHHHHHhcCcchhhccCCccccccccCCCcccccccCCccCC
Confidence 999999999999999988888888888775555555555779986
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-41 Score=233.81 Aligned_cols=197 Identities=39% Similarity=0.672 Sum_probs=172.4
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
...+||+|+|+.+||||||+.|+..+.|.+ ..+|+|.-+....+.+++..+.+.||||+|+++|.++.+.++++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 467999999999999999999999999955 5899999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
+|||+++.+||..++. |...+.... .+++-+.+||||+|+.+.+.+..+++..++.+.++.||++||+++.||+++|.
T Consensus 83 vvYDit~~~SF~~aK~-WvkeL~~~~-~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~ 160 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKN-WVKELQRQA-SPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQ 160 (200)
T ss_pred EEEecccHHHHHHHHH-HHHHHHhhC-CCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHH
Confidence 9999999999999999 888888877 48888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCcccC
Q 028292 170 ELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCCS 210 (211)
Q Consensus 170 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 210 (211)
.|.+.+..............+ ........+++....+||+
T Consensus 161 ~Ia~~lp~~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~C~ 200 (200)
T KOG0092|consen 161 AIAEKLPCSDPQERQGLPNRR-QGVDLNSNQEPARPSGCCA 200 (200)
T ss_pred HHHHhccCccccccccccccc-cceecccCCCCcCcCCcCC
Confidence 999999988776654322222 2222222325666667774
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.2e-40 Score=228.23 Aligned_cols=177 Identities=55% Similarity=0.931 Sum_probs=167.6
Q ss_pred CccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 028292 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYY 82 (211)
Q Consensus 4 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 82 (211)
++...+.++.+||+++|+++||||+|+.++....+ ..+..+.|.++....+.+++..+.+++|||+|+++++.+...++
T Consensus 3 ~~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYy 82 (207)
T KOG0078|consen 3 AMAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYY 82 (207)
T ss_pred ccccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHH
Confidence 45556888999999999999999999999999999 78889999999999999999999999999999999999999999
Q ss_pred cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC
Q 028292 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV 162 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (211)
+.++++++|||+++..||+++.. |+..+..+. ..++|.++||||+|+...+.+..+.++.++.++|+.|+++||++|.
T Consensus 83 rgA~gi~LvyDitne~Sfeni~~-W~~~I~e~a-~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~ 160 (207)
T KOG0078|consen 83 RGAMGILLVYDITNEKSFENIRN-WIKNIDEHA-SDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNF 160 (207)
T ss_pred hhcCeeEEEEEccchHHHHHHHH-HHHHHHhhC-CCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCC
Confidence 99999999999999999999999 999999998 6699999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcc
Q 028292 163 NVEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 163 ~v~~~~~~i~~~~~~~~~~~ 182 (211)
||++.|..|.+.++.+....
T Consensus 161 NI~eaF~~La~~i~~k~~~~ 180 (207)
T KOG0078|consen 161 NIEEAFLSLARDILQKLEDA 180 (207)
T ss_pred CHHHHHHHHHHHHHhhcchh
Confidence 99999999999999755443
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-39 Score=223.14 Aligned_cols=170 Identities=38% Similarity=0.630 Sum_probs=158.3
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
..+.+||+++|+.+|||||||+|++...+ ..|..|.|.++....+.+.+.++++++|||+|+++|+.+.+.|++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 34669999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
|+|||+++..||++... |+..+.......++-+++||||.||.+++++..++....++++++.|.++||+.|.||+.+|
T Consensus 99 viVyDit~~~Sfe~t~k-Wi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lF 177 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSK-WIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLF 177 (221)
T ss_pred EEEEeccccchHHHHHH-HHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHH
Confidence 99999999999999999 66666655535568899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 028292 169 EELVLKILDTPS 180 (211)
Q Consensus 169 ~~i~~~~~~~~~ 180 (211)
..|..++.+...
T Consensus 178 rrIaa~l~~~~~ 189 (221)
T KOG0094|consen 178 RRIAAALPGMEV 189 (221)
T ss_pred HHHHHhccCccc
Confidence 999988887755
No 6
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-39 Score=219.57 Aligned_cols=167 Identities=51% Similarity=0.863 Sum_probs=158.7
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
....+|++++|+.|||||+|+.+++...| +.+..|.|.++-...+++++..+.++||||.|++.+++....+++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 35679999999999999999999999999 77778999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
|||||++++++|.++.. |+..++++. ..+.-+++++||+|+...+.+..+|...|++++++.++++||++++||+++|
T Consensus 83 lLVydit~r~sF~hL~~-wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTS-WLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred EEEEEccchhhHHHHHH-HHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence 99999999999999998 888888887 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 028292 169 EELVLKILDT 178 (211)
Q Consensus 169 ~~i~~~~~~~ 178 (211)
..+...+++.
T Consensus 161 ~nta~~Iy~~ 170 (216)
T KOG0098|consen 161 INTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHH
Confidence 9999988864
No 7
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.3e-38 Score=230.51 Aligned_cols=195 Identities=33% Similarity=0.600 Sum_probs=165.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
+||+++|++|||||||+++|+++.+ ..+.++.+.++....+.++ +..+.+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999988 5677888888887788887 7889999999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhc---CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CcEEEeccCCCCCHHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYS---TNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG-CLFLECSAKTRVNVEQC 167 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~ 167 (211)
||++++++|+.+.. |+..+.... ...++|+++|+||+|+.+.+.+..+++.+++...+ ..++++||++|.|++++
T Consensus 81 ~D~t~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 81 FDVTRPSTFEAVLK-WKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA 159 (201)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence 99999999999977 666655432 13678999999999997667788889999999998 69999999999999999
Q ss_pred HHHHHHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCccc
Q 028292 168 FEELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCC 209 (211)
Q Consensus 168 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 209 (211)
|.+|.+.+.+......+.....+............++..+||
T Consensus 160 f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 160 MRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence 999999998887766666665555555555555555566888
No 8
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=6.9e-38 Score=229.56 Aligned_cols=205 Identities=70% Similarity=1.183 Sum_probs=179.2
Q ss_pred cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
...+....+||+|+|++|||||||+++|++..+..+.++.+.++....+.+++..+.+.||||||++.+..++..+++++
T Consensus 7 ~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 86 (211)
T PLN03118 7 QSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNA 86 (211)
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcC
Confidence 34566678999999999999999999999998878888888888888888888889999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
|++|+|||++++++|+.+...|...+..+....+.|+++|+||+|+...+.+..++...++...++.++++||+++.|++
T Consensus 87 d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~ 166 (211)
T PLN03118 87 QGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVE 166 (211)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999988787777665545678999999999998777778888888888889999999999999999
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCcccC
Q 028292 166 QCFEELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCCS 210 (211)
Q Consensus 166 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 210 (211)
++|.+|...+.+.....++.....+.+..++..........+|||
T Consensus 167 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
T PLN03118 167 QCFEELALKIMEVPSLLEEGSTAVKRNILKQKPEHQPPPNGGCCS 211 (211)
T ss_pred HHHHHHHHHHHhhhhhhhcccccccccccccccccCCCCcCCCCC
Confidence 999999999999888887777777777777755555566678887
No 9
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.3e-37 Score=225.27 Aligned_cols=163 Identities=52% Similarity=0.896 Sum_probs=148.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+.|+++|+.|||||||++++..+.+ ..+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 3699999999999999999999999 667788888888888899999999999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-CCcEEEeccCCCCCHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~i 171 (211)
|++++++|+.+.. |+..+.... ..++|+++|+||+|+...+.+...++.+++... ++.|+++||++|.||+++|.++
T Consensus 81 Dvtd~~Sf~~l~~-w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 81 DITKKETFDDLPK-WMKMIDKYA-SEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999987 777776654 567999999999999888888888998888875 7899999999999999999999
Q ss_pred HHHHHcC
Q 028292 172 VLKILDT 178 (211)
Q Consensus 172 ~~~~~~~ 178 (211)
++.+...
T Consensus 159 ~~~~~~~ 165 (202)
T cd04120 159 VDDILKK 165 (202)
T ss_pred HHHHHHh
Confidence 9998764
No 10
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.5e-37 Score=222.99 Aligned_cols=167 Identities=40% Similarity=0.695 Sum_probs=151.9
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
.+..+||+++|+.|||||||++++..+.+ ..+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999888 56667888888888888899999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
|+|||++++.+|+.+.. |++.+.... .++|++|||||+|+.+.+.+..+++..+++..+++++++||++|.||+++|
T Consensus 83 llVfD~t~~~Sf~~~~~-w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 83 ILVYDITNRWSFDGIDR-WIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF 159 (189)
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 99999999999999987 777776654 589999999999998888899999999999999999999999999999999
Q ss_pred HHHHHHHHcCC
Q 028292 169 EELVLKILDTP 179 (211)
Q Consensus 169 ~~i~~~~~~~~ 179 (211)
.+|.+.+....
T Consensus 160 ~~l~~~i~~~~ 170 (189)
T cd04121 160 TELARIVLMRH 170 (189)
T ss_pred HHHHHHHHHhc
Confidence 99999887533
No 11
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-37 Score=216.47 Aligned_cols=171 Identities=49% Similarity=0.825 Sum_probs=163.1
Q ss_pred cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 028292 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84 (211)
Q Consensus 6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (211)
...+.++.+||+++|+++||||-|+.|+...+| .+..+|.|.++....+.+++..+..+||||+|+++|+.....++++
T Consensus 7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrg 86 (222)
T KOG0087|consen 7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRG 86 (222)
T ss_pred CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcc
Confidence 457788999999999999999999999999999 7888999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164 (211)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (211)
+.++++|||++...+|+.+.. |+..++.+. ..++++++|+||+||.+.+.+..+++..++...++.++++||.++.+|
T Consensus 87 AvGAllVYDITr~~Tfenv~r-WL~ELRdha-d~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNV 164 (222)
T KOG0087|consen 87 AVGALLVYDITRRQTFENVER-WLKELRDHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNV 164 (222)
T ss_pred cceeEEEEechhHHHHHHHHH-HHHHHHhcC-CCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccH
Confidence 999999999999999998888 999999888 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028292 165 EQCFEELVLKILDT 178 (211)
Q Consensus 165 ~~~~~~i~~~~~~~ 178 (211)
+..|..++..++..
T Consensus 165 e~aF~~~l~~I~~~ 178 (222)
T KOG0087|consen 165 EKAFERVLTEIYKI 178 (222)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998764
No 12
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=211.27 Aligned_cols=170 Identities=37% Similarity=0.696 Sum_probs=156.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
...+||+++|++|+|||+|++++.+.+| ..+..+.|.++-.+.+.+++..+.++||||+|+++|.++...+++++|.++
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 4669999999999999999999999999 788899999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCC---CCCcEEEEEeCCCCCC--CcccCHHHHHHHHHHhC-CcEEEeccCCCCC
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTN---QDCIKLLVGNKVDKES--ERVVSKKEGIDFAREYG-CLFLECSAKTRVN 163 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 163 (211)
+|||++++.||+.+.. |...+..+... ..-|+||+|||.|+.. .+.++...+++|+.+.+ ++||++|||...|
T Consensus 87 lvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N 165 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN 165 (210)
T ss_pred EEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence 9999999999999999 77777666532 3469999999999965 38899999999999876 7999999999999
Q ss_pred HHHHHHHHHHHHHcCCCc
Q 028292 164 VEQCFEELVLKILDTPSL 181 (211)
Q Consensus 164 v~~~~~~i~~~~~~~~~~ 181 (211)
|.+.|..+.+.+++....
T Consensus 166 V~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 166 VDEAFEEIARRALANEDR 183 (210)
T ss_pred HHHHHHHHHHHHHhccch
Confidence 999999999999988765
No 13
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.8e-36 Score=222.52 Aligned_cols=169 Identities=46% Similarity=0.816 Sum_probs=152.6
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
.+.++.+||+++|++|||||||+++|.+..+ ..+.++.+.++....+.+++..+.+.|||++|++++..++..+++.++
T Consensus 7 ~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~ 86 (216)
T PLN03110 7 HEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAV 86 (216)
T ss_pred cccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCC
Confidence 3456789999999999999999999999888 567788888888888999999999999999999999999999999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (211)
++|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++..++++++++||++|.|+++
T Consensus 87 ~~ilv~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~ 164 (216)
T PLN03110 87 GALLVYDITKRQTFDNVQR-WLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEK 164 (216)
T ss_pred EEEEEEECCChHHHHHHHH-HHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999887 777776654 46899999999999988788888888899988999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 028292 167 CFEELVLKILDT 178 (211)
Q Consensus 167 ~~~~i~~~~~~~ 178 (211)
+|++|+..+.+.
T Consensus 165 lf~~l~~~i~~~ 176 (216)
T PLN03110 165 AFQTILLEIYHI 176 (216)
T ss_pred HHHHHHHHHHHH
Confidence 999999998763
No 14
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=4.3e-36 Score=218.09 Aligned_cols=195 Identities=46% Similarity=0.772 Sum_probs=162.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
++.++|+|+|++|||||||++++.+..+ ..+.++.+.++....+.+.+..+.+.|||+||++.+...+..+++++|++|
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 4579999999999999999999999988 567788888887788888888899999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
+|||++++++|+.+.. |+..+.... ...|++||+||+|+.+...+..+++..++...+++++++||++|.|++++|+
T Consensus 84 lv~D~~~~~s~~~~~~-~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 84 VVYDVTNGESFVNVKR-WLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFN 160 (199)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence 9999999999999987 666665543 6789999999999987777788888889988899999999999999999999
Q ss_pred HHHHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCccc
Q 028292 170 ELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCC 209 (211)
Q Consensus 170 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 209 (211)
+|...+....................+.+.. .++...||
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 199 (199)
T cd04110 161 CITELVLRAKKDNLAKQQQQQQNDVVKLPKN-SKRKKRCC 199 (199)
T ss_pred HHHHHHHHhhhccCcccccCCccccCccchh-ccccccCC
Confidence 9999998776665555444444443333333 23444566
No 15
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4e-36 Score=217.03 Aligned_cols=189 Identities=40% Similarity=0.749 Sum_probs=158.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
+||+|+|++|||||||++++.++.+ ..+.++.+.++....+.+++..+.+.||||||+..+...+..+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 5899999999999999999999887 35677777777777788899999999999999999988888899999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 171 (211)
||++++++|+++.. |...+.... ..++|+++|+||+|+...+.+..+++..+...++++++++||++|.|++++|.+|
T Consensus 81 ~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l 158 (191)
T cd04112 81 YDITNKASFDNIRA-WLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAV 158 (191)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999988 777776654 4579999999999997777777888888988999999999999999999999999
Q ss_pred HHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCccc
Q 028292 172 VLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCC 209 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 209 (211)
.+.+.+.....+...+.. ........++..+||
T Consensus 159 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 191 (191)
T cd04112 159 AKELKHRKYEQPDEGKFK-----ISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHHHhccccCCCCcEE-----eccccCcccccCCCC
Confidence 999998865544333322 223334555566688
No 16
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7.7e-36 Score=219.44 Aligned_cols=171 Identities=26% Similarity=0.510 Sum_probs=148.8
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
.......+||+++|+.|||||+|++++..+.+ ..+.++.+..+. ..+.+++..+.+.||||+|++.+..+++.+++++
T Consensus 7 ~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~a 85 (232)
T cd04174 7 PQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 85 (232)
T ss_pred CcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCC
Confidence 33445789999999999999999999999988 667788876654 4578899999999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhCC-c
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYGC-L 152 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~ 152 (211)
|++|+|||++++++|+.+...|+..+.... .+.|+++|+||+|+.. .+.+..+++.+++..+++ .
T Consensus 86 d~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~ 163 (232)
T cd04174 86 DAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEV 163 (232)
T ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCE
Confidence 999999999999999986544888887654 5789999999999854 367889999999999998 6
Q ss_pred EEEeccCCCC-CHHHHHHHHHHHHHcCCC
Q 028292 153 FLECSAKTRV-NVEQCFEELVLKILDTPS 180 (211)
Q Consensus 153 ~~~~Sa~~~~-~v~~~~~~i~~~~~~~~~ 180 (211)
|++|||++|+ ||+++|..++..+.+...
T Consensus 164 ~~EtSAktg~~~V~e~F~~~~~~~~~~~~ 192 (232)
T cd04174 164 YLECSAFTSEKSIHSIFRSASLLCLNKLS 192 (232)
T ss_pred EEEccCCcCCcCHHHHHHHHHHHHHHhcc
Confidence 9999999998 899999999999876533
No 17
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.6e-37 Score=205.31 Aligned_cols=207 Identities=33% Similarity=0.611 Sum_probs=173.8
Q ss_pred CCccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccc
Q 028292 3 SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSY 81 (211)
Q Consensus 3 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 81 (211)
....-......|||+++|..-+|||+|+-|++..+| ...-.+.-..+....+.+++....+.||||+|+++|..+-+.+
T Consensus 3 ~~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIY 82 (218)
T KOG0088|consen 3 LETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIY 82 (218)
T ss_pred ccccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceE
Confidence 334445566889999999999999999999999999 5555566667888888999999999999999999999999999
Q ss_pred ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR 161 (211)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (211)
+++++++++|||++|++||+.++. |...++... ...+.+++|+||.|+++.+.+..+++..++..-|+.|+++||+.+
T Consensus 83 YRgSnGalLVyDITDrdSFqKVKn-WV~Elr~ml-Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N 160 (218)
T KOG0088|consen 83 YRGSNGALLVYDITDRDSFQKVKN-WVLELRTML-GNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDN 160 (218)
T ss_pred EeCCCceEEEEeccchHHHHHHHH-HHHHHHHHh-CCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccc
Confidence 999999999999999999999999 777777766 566889999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcccC--------CCCCcccccccCCCCCCCCCCCcccCC
Q 028292 162 VNVEQCFEELVLKILDTPSLLSE--------GSSGVKKNIFKESPPQNDASTTGCCSS 211 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~cc~~ 211 (211)
+||.++|..+...+.+......+ +....+.....+..++...+.++||++
T Consensus 161 ~Gi~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~iD~e~~a~~sg~~CC~~ 218 (218)
T KOG0088|consen 161 VGISELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRLIDNEAEAERSGKRCCRI 218 (218)
T ss_pred cCHHHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhccCCCcccccccCCccCC
Confidence 99999999999888776533222 222223334455565666667779985
No 18
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=3.3e-36 Score=220.27 Aligned_cols=187 Identities=33% Similarity=0.542 Sum_probs=150.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d 93 (211)
+||+++|.+|||||||+++++.+.+..+.++.+.++..... ..+.+.||||+|++.+..++..+++++|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 58999999999999999999999986667777766554433 56789999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-------------------CcccCHHHHHHHHHHhC----
Q 028292 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES-------------------ERVVSKKEGIDFAREYG---- 150 (211)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~---- 150 (211)
++++++|+.+..+|..... .. ..++|+++|+||+|+.. .+.+..+++..++.+.+
T Consensus 77 vt~~~Sf~~l~~~~~~l~~-~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~ 154 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTD-TA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM 154 (220)
T ss_pred CCCHHHHHHHHHHHHHHHH-hc-CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence 9999999999886665543 32 46799999999999965 57888999999999876
Q ss_pred ----------CcEEEeccCCCCCHHHHHHHHHHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCccc
Q 028292 151 ----------CLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCC 209 (211)
Q Consensus 151 ----------~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 209 (211)
++|+++||++|.||+++|..+++.+++............ ..-...+.+++++.+||
T Consensus 155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRT---QGTVNLPNPKRSKSKCC 220 (220)
T ss_pred ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhh---hccccCCCcccCCCCCC
Confidence 689999999999999999999999876433332211111 22233344666777888
No 19
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=9.5e-36 Score=211.47 Aligned_cols=160 Identities=31% Similarity=0.664 Sum_probs=142.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++++|||+|+.++..+.+ ..+.++.+..+ ...+.+++..+.+.||||+|++++..++..+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 7999999999999999999999999 56788887665 455778899999999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc----------ccCHHHHHHHHHHhCC-cEEEeccCCC
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER----------VVSKKEGIDFAREYGC-LFLECSAKTR 161 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 161 (211)
|+++++||+.+...|...+.... .++|++|||||+|+.+.+ .+..+++..++...++ .|+++||++|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~ 158 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ 158 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence 99999999998544777776654 579999999999996543 4788999999999998 6999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 028292 162 VNVEQCFEELVLKIL 176 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~ 176 (211)
.||+++|..+++.+.
T Consensus 159 ~nV~~~F~~~~~~~~ 173 (176)
T cd04133 159 QNVKAVFDAAIKVVL 173 (176)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999999764
No 20
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-36 Score=199.70 Aligned_cols=174 Identities=48% Similarity=0.862 Sum_probs=162.7
Q ss_pred ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 028292 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR 83 (211)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (211)
...+..+..+|++++|...+|||+|+.++++..+ ..+..+.|.++..+++.-...++.+++|||+|++.++.+...+++
T Consensus 13 s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyR 92 (193)
T KOG0093|consen 13 SIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYR 92 (193)
T ss_pred cccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhh
Confidence 3456678899999999999999999999999999 888999999999998887888899999999999999999999999
Q ss_pred CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN 163 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (211)
+++++|++||.++.+||..+.. |...+..+. ..+.|+|+|+||||+.+++.+..+..+.++...|+.||++||+.+.|
T Consensus 93 gamgfiLmyDitNeeSf~svqd-w~tqIktys-w~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~Nin 170 (193)
T KOG0093|consen 93 GAMGFILMYDITNEESFNSVQD-WITQIKTYS-WDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENIN 170 (193)
T ss_pred ccceEEEEEecCCHHHHHHHHH-HHHHheeee-ccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccccccc
Confidence 9999999999999999999999 888888887 88999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q 028292 164 VEQCFEELVLKILDTPS 180 (211)
Q Consensus 164 v~~~~~~i~~~~~~~~~ 180 (211)
|+.+|..++..+.+...
T Consensus 171 Vk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 171 VKQVFERLVDIICDKMS 187 (193)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999998876543
No 21
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1e-35 Score=212.48 Aligned_cols=163 Identities=28% Similarity=0.567 Sum_probs=144.6
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
...+||+++|+.+||||||++++..+.+ ..+.|+.+..+ ...+.+++..+.+.||||+|++.+..+++.+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 3568999999999999999999999998 66778887655 456788999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhCC-cEEEe
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYGC-LFLEC 156 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 156 (211)
+|||++++.+|+.+...|...+.... .+.|+++|+||+|+.+ .+.+..+++.++++.+++ +|++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 99999999999998555888887765 5799999999999854 346889999999999996 89999
Q ss_pred ccCCCCC-HHHHHHHHHHHHH
Q 028292 157 SAKTRVN-VEQCFEELVLKIL 176 (211)
Q Consensus 157 Sa~~~~~-v~~~~~~i~~~~~ 176 (211)
||++|.| |+++|..+++.+.
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999998754
No 22
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=9.1e-36 Score=211.63 Aligned_cols=164 Identities=36% Similarity=0.612 Sum_probs=145.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
.+||+++|.+|||||||++++..+.+ ..+.++.+..+ ...+.+++..+.+.+|||||+..+..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 48999999999999999999999998 46667776444 44577888889999999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 171 (211)
||++++.+|+.+.. |...+.......++|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.||+++|.+|
T Consensus 81 ~d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 81 YSVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred EECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 99999999999987 66666655435689999999999998778888889999999999999999999999999999999
Q ss_pred HHHHHcC
Q 028292 172 VLKILDT 178 (211)
Q Consensus 172 ~~~~~~~ 178 (211)
++.+.+.
T Consensus 160 ~~~~~~~ 166 (172)
T cd04141 160 VREIRRK 166 (172)
T ss_pred HHHHHHh
Confidence 9988753
No 23
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3e-37 Score=202.66 Aligned_cols=166 Identities=52% Similarity=0.845 Sum_probs=157.1
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
...++.+++|++|+|||+|+.++....| ..|..+.|.++...++.+.+..+.+.|||++|++.|+.+...+++..++++
T Consensus 6 dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 6 DHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 4557889999999999999999999998 778889999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
+|||+++.+||.++.. |++.++..+ +.+|-++|+||.|.++.+.+..+++..|+...++.+|++||+..++++.+|.
T Consensus 86 vVYDVTn~ESF~Nv~r-WLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKR-WLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EEEECcchhhhHhHHH-HHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence 9999999999999999 888888776 6899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC
Q 028292 170 ELVLKILDTP 179 (211)
Q Consensus 170 ~i~~~~~~~~ 179 (211)
-|.+++....
T Consensus 163 cit~qvl~~k 172 (198)
T KOG0079|consen 163 CITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHH
Confidence 9999888765
No 24
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.3e-35 Score=209.84 Aligned_cols=163 Identities=51% Similarity=0.859 Sum_probs=146.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
.+||+++|++|||||||++++.++.+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999988 55667888888878888899999999999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 171 (211)
||++++++|+.+.. |+..+.... ..+.|+++|+||+|+...+.+..+++.+++...+++++++||++|.|++++|.++
T Consensus 82 ~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 82 YDITRRSTYNHLSS-WLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999988 666665544 4679999999999998888888889999999999999999999999999999999
Q ss_pred HHHHHc
Q 028292 172 VLKILD 177 (211)
Q Consensus 172 ~~~~~~ 177 (211)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T cd04122 160 AKKIYQ 165 (166)
T ss_pred HHHHhh
Confidence 988764
No 25
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=214.15 Aligned_cols=165 Identities=39% Similarity=0.640 Sum_probs=144.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
..+||+++|.+|||||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++.+|++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 459999999999999999999999888 56667766555 4567788888999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 170 (211)
|||++++++|+.+.. |...+.......++|+++|+||+|+.+.+.+...++..++..++++++++||++|.|++++|.+
T Consensus 83 v~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 83 VYSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 999999999999988 6666655544568999999999999777777888888888888999999999999999999999
Q ss_pred HHHHHHcC
Q 028292 171 LVLKILDT 178 (211)
Q Consensus 171 i~~~~~~~ 178 (211)
|++.+.+.
T Consensus 162 l~~~l~~~ 169 (189)
T PTZ00369 162 LVREIRKY 169 (189)
T ss_pred HHHHHHHH
Confidence 99988753
No 26
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=3e-35 Score=216.10 Aligned_cols=165 Identities=35% Similarity=0.563 Sum_probs=146.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECC-eEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG-KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
+||+++|++|||||||+++|.+..+ ..+.++.+.++....+.+.+ ..+.+.||||+|++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999888 66778888888888888764 578999999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
||++++++|+.+.. |...+..... ..++|+++|+||+|+.+.+.+..++...++..++++++++||++|+|++++|+
T Consensus 81 ~D~t~~~s~~~~~~-w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 81 YDVTNSQSFENLED-WYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999987 7777765542 24578999999999987778888889999999999999999999999999999
Q ss_pred HHHHHHHcCC
Q 028292 170 ELVLKILDTP 179 (211)
Q Consensus 170 ~i~~~~~~~~ 179 (211)
+|.+.+....
T Consensus 160 ~l~~~l~~~~ 169 (215)
T cd04109 160 QLAAELLGVD 169 (215)
T ss_pred HHHHHHHhcc
Confidence 9999998653
No 27
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.6e-35 Score=210.05 Aligned_cols=161 Identities=27% Similarity=0.569 Sum_probs=141.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
.+||+++|++|||||||++++.++.+ ..+.++.+..+ ...+.+++..+.+.+|||+|++.+..+.+.+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 37999999999999999999999988 56677777655 35678889999999999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhCC-cEEEecc
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYGC-LFLECSA 158 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa 158 (211)
||+++++||+++...|...+.... .++|+++|+||+|+.+ .+.+..+++.++++.+++ +|+++||
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA 157 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSA 157 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECcc
Confidence 999999999997545888887765 5799999999999854 245889999999999997 8999999
Q ss_pred CCCCC-HHHHHHHHHHHHH
Q 028292 159 KTRVN-VEQCFEELVLKIL 176 (211)
Q Consensus 159 ~~~~~-v~~~~~~i~~~~~ 176 (211)
++|++ |+++|..+.+...
T Consensus 158 ~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 158 FTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CcCCcCHHHHHHHHHHHHh
Confidence 99995 9999999998654
No 28
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.8e-35 Score=213.40 Aligned_cols=165 Identities=39% Similarity=0.642 Sum_probs=140.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d 93 (211)
||+++|.+|||||||+++|..+.+ ..+.++.+..+ ...+.+++..+.+.||||||++++..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999999888 44556665443 3456678888899999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292 94 VTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 171 (211)
++++++|+.+.. |...+..... ..++|+++|+||+|+...+.+...++..++..++++++++||++|.|++++|.++
T Consensus 80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l 158 (190)
T cd04144 80 ITSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL 158 (190)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999888 5555544332 2578999999999998777788888888888899999999999999999999999
Q ss_pred HHHHHcCCCc
Q 028292 172 VLKILDTPSL 181 (211)
Q Consensus 172 ~~~~~~~~~~ 181 (211)
++.+.++...
T Consensus 159 ~~~l~~~~~~ 168 (190)
T cd04144 159 VRALRQQRQG 168 (190)
T ss_pred HHHHHHhhcc
Confidence 9988755544
No 29
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.6e-35 Score=210.66 Aligned_cols=164 Identities=49% Similarity=0.801 Sum_probs=147.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|||||||++++.++.+ ..+.++.+.++....+.+++..+.+.+||++|++.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999998 447888888888888888888999999999999999989999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
|++++++|..+.. |+..+..+. ...+|+++|+||+|+.+...+...++..++...+++++++||++|.|++++|.+++
T Consensus 81 d~~~~~s~~~i~~-~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~ 158 (188)
T cd04125 81 DVTDQESFENLKF-WINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV 158 (188)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999988 777776654 45689999999999987777888888888888899999999999999999999999
Q ss_pred HHHHcCC
Q 028292 173 LKILDTP 179 (211)
Q Consensus 173 ~~~~~~~ 179 (211)
+.+..+.
T Consensus 159 ~~~~~~~ 165 (188)
T cd04125 159 KLIIKRL 165 (188)
T ss_pred HHHHHHh
Confidence 9998643
No 30
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=4.2e-35 Score=207.49 Aligned_cols=164 Identities=58% Similarity=0.968 Sum_probs=148.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
..+||+++|++|+|||||++++.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 569999999999999999999999998 6678888888887888888888999999999999999889999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 170 (211)
|||++++++|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|.+
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 82 VYDITDEKSFENIRN-WMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT 159 (167)
T ss_pred EEECcCHHHHHhHHH-HHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999988 777776654 568999999999999877777888888899999999999999999999999999
Q ss_pred HHHHHHc
Q 028292 171 LVLKILD 177 (211)
Q Consensus 171 i~~~~~~ 177 (211)
+.+++..
T Consensus 160 i~~~~~~ 166 (167)
T cd01867 160 LAKDIKK 166 (167)
T ss_pred HHHHHHh
Confidence 9998864
No 31
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=5.7e-35 Score=210.83 Aligned_cols=163 Identities=29% Similarity=0.557 Sum_probs=142.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
..+||+++|+.+||||||++++..+.+ ..+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 358999999999999999999999998 677788875543 456788899999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhC-CcEEEec
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYG-CLFLECS 157 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~S 157 (211)
|||++++.+|+.+...|...+.... .++|+++|+||.|+.+. +.+..+++..++..++ ++++++|
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S 158 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECS 158 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC
Confidence 9999999999999865777776543 57999999999999543 2366778889999988 5999999
Q ss_pred cCCCCCHHHHHHHHHHHHHc
Q 028292 158 AKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 158 a~~~~~v~~~~~~i~~~~~~ 177 (211)
|++|+||+++|.++++.+..
T Consensus 159 Ak~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 159 ALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999998864
No 32
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=4.5e-35 Score=209.77 Aligned_cols=167 Identities=38% Similarity=0.744 Sum_probs=147.3
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC----------CeEEEEEEEeCCCccccccccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG----------GKKMKLAIWDTAGQERFRTLTS 79 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~ 79 (211)
++.+||+++|++|||||||++++.++.+ ..+.++.+.++....+.+. +..+.+.|||+||++.+...+.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 3679999999999999999999999988 6677888877776666554 4568899999999999999999
Q ss_pred ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccC
Q 028292 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK 159 (211)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (211)
.+++++|++|+|||++++++|..+.. |+..+.......+.|+++|+||+|+.+.+.+..+++.+++..++++++++||+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 99999999999999999999999988 77777665545689999999999998877888888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcC
Q 028292 160 TRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 160 ~~~~v~~~~~~i~~~~~~~ 178 (211)
+|.|++++|++|.+.+.++
T Consensus 161 ~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 161 TGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999987643
No 33
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.1e-34 Score=212.43 Aligned_cols=166 Identities=22% Similarity=0.524 Sum_probs=144.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+|+|++|||||+|++++..+.+ ..+.|+.+..+. ..+.+++..+.+.||||+|++.+..+++.+++++|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 7999999999999999999999988 567788876554 56788999999999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEeccC
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLECSAK 159 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (211)
|++++++|+.+...|...+.... .++|+++|+||+|+... ..+..+++..++...++ +|++|||+
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~--~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC--PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 99999999999776887766543 68999999999999542 24778899999999996 89999999
Q ss_pred CCCC-HHHHHHHHHHHHHcCCCcc
Q 028292 160 TRVN-VEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 160 ~~~~-v~~~~~~i~~~~~~~~~~~ 182 (211)
++.+ |+++|..+..+...+....
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~~~~ 182 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRGHRQ 182 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhccCCc
Confidence 9985 9999999999887755443
No 34
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.4e-34 Score=211.67 Aligned_cols=166 Identities=43% Similarity=0.758 Sum_probs=146.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+||+|+|++|||||||++++++..+ ..+.++.+.++....+.+ ++..+.+.+|||+|++.+...+..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999888 456678887777777766 4667899999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 170 (211)
|||++++++|+.+.. |+..+........+|+++|+||+|+...+.+..+++.++++.++++++++||++|.|++++|++
T Consensus 82 v~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 82 VFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999988 6666655543456889999999999887788888899999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 028292 171 LVLKILDTP 179 (211)
Q Consensus 171 i~~~~~~~~ 179 (211)
|.+.+.+..
T Consensus 161 l~~~~~~~~ 169 (211)
T cd04111 161 LTQEIYERI 169 (211)
T ss_pred HHHHHHHHh
Confidence 999887663
No 35
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.2e-34 Score=204.00 Aligned_cols=159 Identities=46% Similarity=0.845 Sum_probs=143.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|+|||||+++++++.+ ..+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999988 566788888887788888888899999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
|++++++|+.+.. |+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++|+++||++|.|++++|.+|.
T Consensus 81 d~~~~~sf~~~~~-~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 81 DISSERSYQHIMK-WVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999987 777766554 45799999999999988888888999999999999999999999999999999998
Q ss_pred HH
Q 028292 173 LK 174 (211)
Q Consensus 173 ~~ 174 (211)
+.
T Consensus 159 ~~ 160 (161)
T cd04117 159 EL 160 (161)
T ss_pred hh
Confidence 64
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=2.2e-34 Score=203.39 Aligned_cols=162 Identities=49% Similarity=0.871 Sum_probs=144.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|||||||++++.+..+ ..+.++.+.++....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999998 567788887777777777888899999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
|++++++|+.+.. |...+.... ..++|+++|+||+|+.+.+.+..++..+++...+++++++||++|.|++++|+++.
T Consensus 82 d~~~~~s~~~~~~-~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 82 DITNEESFNAVQD-WSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999987 777776554 45789999999999987777778888888888899999999999999999999999
Q ss_pred HHHHc
Q 028292 173 LKILD 177 (211)
Q Consensus 173 ~~~~~ 177 (211)
..+.+
T Consensus 160 ~~~~~ 164 (165)
T cd01865 160 DIICD 164 (165)
T ss_pred HHHHh
Confidence 87654
No 37
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=1.5e-34 Score=205.81 Aligned_cols=160 Identities=30% Similarity=0.576 Sum_probs=139.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
.+||+++|++|||||||++++..+.+ ..+.|+.+..+. ..+.+++..+.+.||||+|++.+...+..+++++|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 47999999999999999999999998 677788876554 4567788889999999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhC-CcEEEecc
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYG-CLFLECSA 158 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa 158 (211)
||++++++|+.+...|...+.... .++|+++|+||+|+.+. +.+..+++.++++..+ +.|+++||
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 157 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSA 157 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecC
Confidence 999999999999866877776543 57999999999998543 4577788888988887 68999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 028292 159 KTRVNVEQCFEELVLKI 175 (211)
Q Consensus 159 ~~~~~v~~~~~~i~~~~ 175 (211)
++|.|++++|+.++..+
T Consensus 158 ~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 158 LTQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998864
No 38
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.9e-34 Score=204.07 Aligned_cols=163 Identities=32% Similarity=0.630 Sum_probs=145.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|||||||++++++..+ ..+.++.+.++....+.+.+..+.+++|||||++.+..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999988 677788888888888888899999999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCC----CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTN----QDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
|++++.+|+.+.. |...+...... .+.|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|
T Consensus 81 D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 81 DVTDRQSFEALDS-WLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999998877 77777665532 579999999999997666778888888888889999999999999999999
Q ss_pred HHHHHHHHc
Q 028292 169 EELVLKILD 177 (211)
Q Consensus 169 ~~i~~~~~~ 177 (211)
++|++.+.+
T Consensus 160 ~~l~~~l~~ 168 (168)
T cd04119 160 QTLFSSIVD 168 (168)
T ss_pred HHHHHHHhC
Confidence 999988753
No 39
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2.8e-34 Score=203.12 Aligned_cols=163 Identities=60% Similarity=0.951 Sum_probs=146.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
.+||+++|++|||||||++++.++.+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999999888 55667777778878888888889999999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 171 (211)
||++++++|..+.. |+..+.... ..+.|+++|+||+|+.....+..+++..++..++++++++||++|+|++++|.+|
T Consensus 82 ~d~~~~~s~~~l~~-~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 82 YDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred EECcCHHHHHhHHH-HHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence 99999999999988 777776554 4679999999999998777788888999999999999999999999999999999
Q ss_pred HHHHHc
Q 028292 172 VLKILD 177 (211)
Q Consensus 172 ~~~~~~ 177 (211)
.+.+..
T Consensus 160 ~~~~~~ 165 (166)
T cd01869 160 AREIKK 165 (166)
T ss_pred HHHHHh
Confidence 998753
No 40
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=6.4e-34 Score=205.98 Aligned_cols=163 Identities=33% Similarity=0.593 Sum_probs=142.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
+||+|+|++|||||||+++++++.+. .+.++.+..+....+.+++..+.+.+||++|++++..++..++.++|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 48999999999999999999999883 4778888888788888999999999999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE----RVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC 167 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 167 (211)
||++++.+|+.+.. |+..+... ..++|+++|+||+|+... ..+...++..++..++++++++||+++.|++++
T Consensus 81 ~d~~~~~s~~~~~~-~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 157 (193)
T cd04118 81 YDLTDSSSFERAKF-WVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDEL 157 (193)
T ss_pred EECCCHHHHHHHHH-HHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999998877 77766554 357999999999998532 345566777888888899999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028292 168 FEELVLKILDTP 179 (211)
Q Consensus 168 ~~~i~~~~~~~~ 179 (211)
|++|.+.+.+..
T Consensus 158 ~~~i~~~~~~~~ 169 (193)
T cd04118 158 FQKVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHHHhc
Confidence 999999997644
No 41
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=5.7e-34 Score=208.44 Aligned_cols=167 Identities=49% Similarity=0.825 Sum_probs=148.4
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
.+.+||+|+|++|+|||||++++++..+ ..+.++.+.++....+.+.+..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 4679999999999999999999999887 556778888888888888898899999999999999888999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
+|||++++.+|+.+.. |+..+.... ....|+++|+||+|+.+.+.+..++..++++.++++++++||+++.|++++|.
T Consensus 84 lv~D~~~~~s~~~l~~-~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~ 161 (210)
T PLN03108 84 LVYDITRRETFNHLAS-WLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (210)
T ss_pred EEEECCcHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999877 665555443 46799999999999988778888899999999999999999999999999999
Q ss_pred HHHHHHHcCC
Q 028292 170 ELVLKILDTP 179 (211)
Q Consensus 170 ~i~~~~~~~~ 179 (211)
++++.+++..
T Consensus 162 ~l~~~~~~~~ 171 (210)
T PLN03108 162 KTAAKIYKKI 171 (210)
T ss_pred HHHHHHHHHh
Confidence 9999988643
No 42
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.4e-34 Score=202.72 Aligned_cols=160 Identities=40% Similarity=0.720 Sum_probs=138.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|||||||++++..+.+ ..+.++.+ +.....+.+++..+.+.||||||++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999887 44555555 444566778888899999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
|++++.+|+.+.. |...+.......++|+++|+||+|+.+.+.+..++...+...++++++++||++|.|++++|.++.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 81 SITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999888 666665554456899999999999977777777778888888889999999999999999999998
Q ss_pred HHH
Q 028292 173 LKI 175 (211)
Q Consensus 173 ~~~ 175 (211)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 764
No 43
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.1e-35 Score=196.29 Aligned_cols=171 Identities=44% Similarity=0.774 Sum_probs=152.7
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
+...+.++++|+|++-+|||+|++.++.+++ ....|+.|.++....+.+ .+..+.+++|||+|+++++++...+++++
T Consensus 3 pif~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrns 82 (213)
T KOG0091|consen 3 PIFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNS 82 (213)
T ss_pred cceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcc
Confidence 3456889999999999999999999999999 667889998888777766 56678999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (211)
-++++|||.++.+||+++.. |......+.. ...+-+.+|++|+|+...+++..++++.++..+++.|+++||++|.||
T Consensus 83 vgvllvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NV 161 (213)
T KOG0091|consen 83 VGVLLVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNV 161 (213)
T ss_pred cceEEEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcH
Confidence 99999999999999999999 7776666654 344556788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 028292 165 EQCFEELVLKILDTP 179 (211)
Q Consensus 165 ~~~~~~i~~~~~~~~ 179 (211)
++.|+.|.+.++...
T Consensus 162 eEAF~mlaqeIf~~i 176 (213)
T KOG0091|consen 162 EEAFDMLAQEIFQAI 176 (213)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887643
No 44
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=3.7e-34 Score=204.88 Aligned_cols=166 Identities=27% Similarity=0.561 Sum_probs=142.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|+.|||||||++++..+.+ ..+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999988 568889998888888889999999999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-----CcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES-----ERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC 167 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 167 (211)
|++++++|+++.. |+..+.... ....| ++|+||+|+.. ......+++.+++...+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~-~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKE-WYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999987 777666554 34566 67899999842 1122346677888888999999999999999999
Q ss_pred HHHHHHHHHcCCCcc
Q 028292 168 FEELVLKILDTPSLL 182 (211)
Q Consensus 168 ~~~i~~~~~~~~~~~ 182 (211)
|.++.+.+.+.+...
T Consensus 158 f~~l~~~l~~~~~~~ 172 (182)
T cd04128 158 FKIVLAKAFDLPLTI 172 (182)
T ss_pred HHHHHHHHHhcCCCh
Confidence 999999998755444
No 45
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=4.2e-34 Score=210.19 Aligned_cols=168 Identities=35% Similarity=0.538 Sum_probs=146.2
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
+......+||+++|++|||||||+++++.+.+ ..+.++.+.++....+..++..+.+.+|||+|++.+..++..+++++
T Consensus 7 ~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 86 (219)
T PLN03071 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG 86 (219)
T ss_pred CCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccc
Confidence 44447889999999999999999999999988 67888999888888888888889999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
|++|+|||++++.+|+.+.. |+..+.... .++|+++|+||+|+.. +.+..+++ .+....++.|+++||++|.|++
T Consensus 87 ~~~ilvfD~~~~~s~~~i~~-w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~ 161 (219)
T PLN03071 87 QCAIIMFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFE 161 (219)
T ss_pred cEEEEEEeCCCHHHHHHHHH-HHHHHHHhC--CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHH
Confidence 99999999999999999987 777776554 5799999999999853 33444444 6777888999999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028292 166 QCFEELVLKILDTP 179 (211)
Q Consensus 166 ~~~~~i~~~~~~~~ 179 (211)
++|.||.+.+.+..
T Consensus 162 ~~f~~l~~~~~~~~ 175 (219)
T PLN03071 162 KPFLYLARKLAGDP 175 (219)
T ss_pred HHHHHHHHHHHcCc
Confidence 99999999997653
No 46
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-35 Score=192.92 Aligned_cols=170 Identities=47% Similarity=0.801 Sum_probs=159.4
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
.+..++.+|++++|+.|+|||.|++++...++ +...++.|.++....+.+.+..+.++||||+|+++|+...+.+++++
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 35567889999999999999999999999999 88889999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
.+.++|||++++++|+.+.. |+...+... ..++.+++++||.|+.+.+++...++.+|+++..+.+.++|+++|+||+
T Consensus 83 AGAlLVYD~TsrdsfnaLtn-WL~DaR~lA-s~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVE 160 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTN-WLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE 160 (214)
T ss_pred cceEEEEeccchhhHHHHHH-HHHHHHhhC-CCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHH
Confidence 99999999999999999998 888888777 7889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028292 166 QCFEELVLKILDT 178 (211)
Q Consensus 166 ~~~~~i~~~~~~~ 178 (211)
+.|-...+.+..+
T Consensus 161 EaFl~c~~tIl~k 173 (214)
T KOG0086|consen 161 EAFLKCARTILNK 173 (214)
T ss_pred HHHHHHHHHHHHH
Confidence 9998887777643
No 47
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=6.7e-34 Score=204.91 Aligned_cols=166 Identities=32% Similarity=0.577 Sum_probs=140.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
+||+|+|++|||||||++++.++.+ ..+.++.+..+.. .+... +..+.+.+|||||++.+...+..++.++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999988 5566666655543 34444 6778999999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC----cccCHHHHHHHHHHhCC-cEEEeccCCCCCHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE----RVVSKKEGIDFAREYGC-LFLECSAKTRVNVEQ 166 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~ 166 (211)
||++++++|+.+...|+..+.... .++|+++|+||+|+... +.+...++.+++..+++ +++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 157 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC--PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEE 157 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHH
Confidence 999999999998766777665443 57999999999998543 35677888899999988 999999999999999
Q ss_pred HHHHHHHHHHcCCCcc
Q 028292 167 CFEELVLKILDTPSLL 182 (211)
Q Consensus 167 ~~~~i~~~~~~~~~~~ 182 (211)
+|..+++.+.......
T Consensus 158 ~f~~l~~~~~~~~~~~ 173 (187)
T cd04132 158 VFDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHHhhhhhh
Confidence 9999999998665544
No 48
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=8.7e-34 Score=200.36 Aligned_cols=162 Identities=48% Similarity=0.828 Sum_probs=145.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
..+||+++|.+|||||||++++.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+..++..++++++++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 468999999999999999999999988 5677888888888888888888999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 170 (211)
|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 159 (165)
T cd01868 82 VYDITKKQTFENVER-WLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQ 159 (165)
T ss_pred EEECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999887 777776655 457999999999999877777888888888888899999999999999999999
Q ss_pred HHHHH
Q 028292 171 LVLKI 175 (211)
Q Consensus 171 i~~~~ 175 (211)
|+..+
T Consensus 160 l~~~i 164 (165)
T cd01868 160 LLTEI 164 (165)
T ss_pred HHHHh
Confidence 99875
No 49
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=8.2e-34 Score=200.30 Aligned_cols=162 Identities=41% Similarity=0.716 Sum_probs=139.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
.+||+++|.+|||||||+++++.+.+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999998887 45566666544 45677788889999999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 171 (211)
||++++.+|+.+.. |...+.......+.|+++|+||+|+.+...+...+...+++.++++++++||++|.|++++|.++
T Consensus 80 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 80 YSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 99999999999988 55555444435789999999999998777777777888888889999999999999999999999
Q ss_pred HHHHH
Q 028292 172 VLKIL 176 (211)
Q Consensus 172 ~~~~~ 176 (211)
.+.+.
T Consensus 159 ~~~l~ 163 (164)
T cd04175 159 VRQIN 163 (164)
T ss_pred HHHhh
Confidence 98764
No 50
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=7.1e-34 Score=200.20 Aligned_cols=160 Identities=46% Similarity=0.789 Sum_probs=149.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d 93 (211)
||+++|+++||||||+++|.++.+ ..+.++.+.+.....+.+++..+.+.+||++|++.+..+...++.++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999998 6677888889999999999999999999999999999888899999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 028292 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVL 173 (211)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 173 (211)
+++++||+.+.. |+..+.... ..++|++||+||.|+.+.+.+..+++..++..++++|+++||+++.|+.++|..+++
T Consensus 81 ~~~~~S~~~~~~-~~~~i~~~~-~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~ 158 (162)
T PF00071_consen 81 VTDEESFENLKK-WLEEIQKYK-PEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIR 158 (162)
T ss_dssp TTBHHHHHTHHH-HHHHHHHHS-TTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred cccccccccccc-ccccccccc-cccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999996 888888777 357999999999999888899999999999999999999999999999999999999
Q ss_pred HHH
Q 028292 174 KIL 176 (211)
Q Consensus 174 ~~~ 176 (211)
.+.
T Consensus 159 ~i~ 161 (162)
T PF00071_consen 159 KIL 161 (162)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 51
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.6e-33 Score=199.59 Aligned_cols=165 Identities=51% Similarity=0.854 Sum_probs=147.3
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
...+||+|+|.+|||||||++++.+..+ ..+.++.+.++....+.+.+....+.+||+||++++..+...+++++|++|
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 3568999999999999999999999887 555677788888888888888899999999999999888889999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
+|||++++.+|+.+.. |+..+.... ..++|+++|+||.|+.....+..+++..++...++.++++||+++.|++++|.
T Consensus 82 ~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~ 159 (168)
T cd01866 82 LVYDITRRETFNHLTS-WLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFI 159 (168)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999887 777666554 47899999999999987777888888889999999999999999999999999
Q ss_pred HHHHHHHc
Q 028292 170 ELVLKILD 177 (211)
Q Consensus 170 ~i~~~~~~ 177 (211)
++.+.+++
T Consensus 160 ~~~~~~~~ 167 (168)
T cd01866 160 NTAKEIYE 167 (168)
T ss_pred HHHHHHHh
Confidence 99998865
No 52
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.5e-33 Score=199.18 Aligned_cols=161 Identities=48% Similarity=0.820 Sum_probs=142.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
+.+||+++|++|+|||||++++..+.+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 568999999999999999999999887 5566777777777888888888899999999999999889999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~ 169 (211)
|||++++++|+.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..+++..+. .++++||++|.|+++++.
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 82 AYDITRRSSFESVPH-WIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred EEECcCHHHHHhHHH-HHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 999999999999887 777666544 56899999999999987777888888889888886 789999999999999999
Q ss_pred HHHHH
Q 028292 170 ELVLK 174 (211)
Q Consensus 170 ~i~~~ 174 (211)
++.+.
T Consensus 160 ~l~~~ 164 (165)
T cd01864 160 LMATE 164 (165)
T ss_pred HHHHh
Confidence 99875
No 53
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=2.2e-33 Score=198.98 Aligned_cols=163 Identities=33% Similarity=0.589 Sum_probs=141.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d 93 (211)
||+++|++|||||||++++.++.+ ..+.++.+.++....+.+++..+.+++|||||++.+..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999999988 6788899988888888889989999999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 171 (211)
++++++|+.+.. |+..+........+|+++|+||+|+.+... ...+++..++..++.+++++||++|.|++++|..|
T Consensus 82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 999999999887 666654433234678999999999865433 34566777888888999999999999999999999
Q ss_pred HHHHHcC
Q 028292 172 VLKILDT 178 (211)
Q Consensus 172 ~~~~~~~ 178 (211)
.+.+.+.
T Consensus 161 ~~~~~~~ 167 (170)
T cd04108 161 AALTFEL 167 (170)
T ss_pred HHHHHHc
Confidence 9988653
No 54
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.8e-33 Score=198.55 Aligned_cols=161 Identities=43% Similarity=0.731 Sum_probs=138.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+|+|++|||||||++++.+..+ ..+.++.+ +.......+++..+.+.+|||||++++..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999888 44444444 344566677888899999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
|++++++|+.+.. |...+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++|+
T Consensus 80 d~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 80 SITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence 9999999999988 555554444356899999999999987777788888888888899999999999999999999999
Q ss_pred HHHH
Q 028292 173 LKIL 176 (211)
Q Consensus 173 ~~~~ 176 (211)
+.+.
T Consensus 159 ~~~~ 162 (164)
T smart00173 159 REIR 162 (164)
T ss_pred HHHh
Confidence 8765
No 55
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3.6e-33 Score=201.24 Aligned_cols=161 Identities=32% Similarity=0.534 Sum_probs=137.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
.||+++|++|||||||++++.++.+ ..+.++.+..+. ..+.+++..+.+.|||++|++.+..++..++.++|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 3899999999999999999999988 456677665543 45667888899999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHhC-CcEEEeccC
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVSKKEGIDFAREYG-CLFLECSAK 159 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~Sa~ 159 (211)
|++++++|+.+...|+..+.... .+.|+++|+||+|+.+.+ .+..+++..++...+ +.|+++||+
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 157 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAK 157 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCC
Confidence 99999999998765777776544 579999999999996543 345667778887777 689999999
Q ss_pred CCCCHHHHHHHHHHHHHc
Q 028292 160 TRVNVEQCFEELVLKILD 177 (211)
Q Consensus 160 ~~~~v~~~~~~i~~~~~~ 177 (211)
+|.|++++|.+|.+.+..
T Consensus 158 ~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 158 LNRGVNEAFTEAARVALN 175 (189)
T ss_pred cCCCHHHHHHHHHHHHhc
Confidence 999999999999999873
No 56
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2.1e-33 Score=199.80 Aligned_cols=158 Identities=30% Similarity=0.568 Sum_probs=137.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|||||||+.+++.+.+ ..+.++.+. .....+.+++..+.+.||||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999888 566677653 33456678888899999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEeccC
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLECSAK 159 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (211)
|++++++|+.+...|...+.... .++|+++|+||+|+.+. +.+..+++..++..++. +++++||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 99999999999765777776543 57999999999999542 34778889999999985 99999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028292 160 TRVNVEQCFEELVLK 174 (211)
Q Consensus 160 ~~~~v~~~~~~i~~~ 174 (211)
+|.|++++|+.+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
No 57
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.7e-33 Score=198.06 Aligned_cols=159 Identities=48% Similarity=0.793 Sum_probs=143.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+|+|++|||||||+++|.++.+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988 667778888888888888888899999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
|++++++|..+.. |+..+.... ..++|+++|+||+|+.+...+..+++..++...++.++++||+++.|++++|.++.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 81 DITNRTSFEALPT-WLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999887 666665554 57899999999999988778888899999999999999999999999999999998
Q ss_pred HH
Q 028292 173 LK 174 (211)
Q Consensus 173 ~~ 174 (211)
+.
T Consensus 159 ~~ 160 (161)
T cd04113 159 RS 160 (161)
T ss_pred Hh
Confidence 75
No 58
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=2.2e-33 Score=197.88 Aligned_cols=161 Identities=40% Similarity=0.652 Sum_probs=138.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
.+||+++|.+|+|||||++++..+.+ ..+.++.+ ++....+.+++..+.+.|||+||++.+..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 37999999999999999999999988 44445543 55566777888888999999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 171 (211)
||++++.+|+++.. |...+.......++|+++|+||+|+.....+...+...++..++++++++||+++.|++++|.++
T Consensus 80 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 80 YSLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 99999999999988 55555544435789999999999997766777777788888888999999999999999999999
Q ss_pred HHHH
Q 028292 172 VLKI 175 (211)
Q Consensus 172 ~~~~ 175 (211)
.+.+
T Consensus 159 ~~~l 162 (163)
T cd04176 159 VRQM 162 (163)
T ss_pred HHhc
Confidence 8754
No 59
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-34 Score=188.71 Aligned_cols=168 Identities=45% Similarity=0.836 Sum_probs=157.5
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (211)
+....+||+++|..|+|||.|+++++.+-| +....+.|.++..+++.++++.+.++||||+|+++++++...+++.+++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 445779999999999999999999999999 7788899999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC 167 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 167 (211)
+|+|||++..++|+-+.+ |+..+.++. +..+.-|+|+||.|+.+.+++..+...+|+.....-|+++||+..++|+.+
T Consensus 83 lilvydiscqpsfdclpe-wlreie~ya-n~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPE-WLREIEQYA-NNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL 160 (213)
T ss_pred EEEEEecccCcchhhhHH-HHHHHHHHh-hcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence 999999999999999999 999999999 777888999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHcC
Q 028292 168 FEELVLKILDT 178 (211)
Q Consensus 168 ~~~i~~~~~~~ 178 (211)
|..+.-.+...
T Consensus 161 f~~~a~rli~~ 171 (213)
T KOG0095|consen 161 FLDLACRLISE 171 (213)
T ss_pred HHHHHHHHHHH
Confidence 99998877654
No 60
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=3.4e-33 Score=198.24 Aligned_cols=163 Identities=39% Similarity=0.677 Sum_probs=145.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-ccccccccCccEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-TLTSSYYRGAQGII 89 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~d~~i 89 (211)
+.+||+++|++|||||||+++++.+.+ ..+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++++|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 358999999999999999999999888 5677788888888888889999999999999998886 57888899999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC---CCCHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT---RVNVEQ 166 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~ 166 (211)
+|||++++++|..+.. |...+.......++|+++|+||+|+...+.+..+++.+++...+++++++||++ +.++++
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~ 159 (170)
T cd04115 81 FVYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEA 159 (170)
T ss_pred EEEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHH
Confidence 9999999999999987 887777665467899999999999988888888888899999899999999999 899999
Q ss_pred HHHHHHHHH
Q 028292 167 CFEELVLKI 175 (211)
Q Consensus 167 ~~~~i~~~~ 175 (211)
+|.++++.+
T Consensus 160 ~f~~l~~~~ 168 (170)
T cd04115 160 IFMTLAHKL 168 (170)
T ss_pred HHHHHHHHh
Confidence 999998766
No 61
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=4.6e-33 Score=196.72 Aligned_cols=161 Identities=36% Similarity=0.616 Sum_probs=138.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|||||||+++++.+.+ ..+.++.+.++....+..++..+.+.+|||+|++.+...+..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999998887 567788888887777777888899999999999999888889999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
|++++++|+.+.. |...+.... .++|+++|+||+|+.. ..+. .+..++....++.++++||++|.|++++|++|.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~--~~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 81 DVTSRVTYKNVPN-WHRDLVRVC--GNIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhC--CCCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence 9999999999887 777777665 3899999999999863 2333 344567777788999999999999999999999
Q ss_pred HHHHcCC
Q 028292 173 LKILDTP 179 (211)
Q Consensus 173 ~~~~~~~ 179 (211)
+.+.+..
T Consensus 156 ~~~~~~~ 162 (166)
T cd00877 156 RKLLGNP 162 (166)
T ss_pred HHHHhcc
Confidence 9987643
No 62
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=3.3e-33 Score=196.77 Aligned_cols=158 Identities=34% Similarity=0.633 Sum_probs=140.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC--CeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG--GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
+||+++|++|+|||||+++++++.+ ..+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999888 5667888887777777776 778899999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 170 (211)
|||++++++|+.+.. |+..+.... .++|+++|+||+|+.....+..+++..++...+++++++||+++.|+++++.+
T Consensus 81 v~d~~~~~s~~~l~~-~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (162)
T cd04106 81 VFSTTDRESFEAIES-WKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEY 157 (162)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 999999999998887 776665443 68999999999999877778888888999999999999999999999999999
Q ss_pred HHHH
Q 028292 171 LVLK 174 (211)
Q Consensus 171 i~~~ 174 (211)
|...
T Consensus 158 l~~~ 161 (162)
T cd04106 158 LAEK 161 (162)
T ss_pred HHHh
Confidence 9754
No 63
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=6.4e-33 Score=195.67 Aligned_cols=161 Identities=37% Similarity=0.621 Sum_probs=137.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
.+||+++|++|+|||||++++++..+ ..+.++.+.. ......+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 48999999999999999999998877 4555555533 344566788889999999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 171 (211)
||++++.+|+.+.. |...+.......++|+++|+||+|+.....+..++..+++...+++++++||++|.|++++|++|
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 81 FSVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 99999999999988 55555544435689999999999997777777778888888888999999999999999999999
Q ss_pred HHHH
Q 028292 172 VLKI 175 (211)
Q Consensus 172 ~~~~ 175 (211)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8764
No 64
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=7.5e-33 Score=195.25 Aligned_cols=162 Identities=57% Similarity=0.942 Sum_probs=145.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|+|||||++++.+..+ ....++.+.++....+.+.+..+.+.+||+||+..+...+..+++++|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999887 566678888888888888888899999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
|++++.+++.+.. |+..+..+. ..++|+++|+||+|+.....+..+.+..+....+++++++|++++.|+++++++|.
T Consensus 81 d~~~~~s~~~~~~-~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 81 DITNRESFENLKN-WLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999887 777776665 46899999999999877677788888888888899999999999999999999999
Q ss_pred HHHHc
Q 028292 173 LKILD 177 (211)
Q Consensus 173 ~~~~~ 177 (211)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T smart00175 159 REILK 163 (164)
T ss_pred HHHhh
Confidence 98865
No 65
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=8e-33 Score=195.44 Aligned_cols=159 Identities=33% Similarity=0.513 Sum_probs=135.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|||||||+++++++.+ ..+.++.+..+ ...+..+...+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988 45556555433 445566778889999999999999988888999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 170 (211)
|++++++|+.+.. |...+..... ..++|+++|+||+|+.+.+.+...++..++..+++.++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence 9999999999888 5555544321 267999999999999776778888888888888999999999999999999999
Q ss_pred HHHH
Q 028292 171 LVLK 174 (211)
Q Consensus 171 i~~~ 174 (211)
|++.
T Consensus 160 l~~~ 163 (165)
T cd04140 160 LLNL 163 (165)
T ss_pred HHhc
Confidence 9864
No 66
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=9.3e-33 Score=194.29 Aligned_cols=160 Identities=37% Similarity=0.660 Sum_probs=136.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
.+||+++|++|||||||+++++++.+ ..+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 37999999999999999999999887 55556665443 45567788888899999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 171 (211)
||+++..+|+.+.. |...+.......++|+++|+||+|+.+ +.+...++..++...+++++++||++|.|++++|.++
T Consensus 80 ~~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 80 FAINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999887 555555554456899999999999865 4566777888888889999999999999999999999
Q ss_pred HHHH
Q 028292 172 VLKI 175 (211)
Q Consensus 172 ~~~~ 175 (211)
++.+
T Consensus 158 ~~~~ 161 (162)
T cd04138 158 VREI 161 (162)
T ss_pred HHHh
Confidence 8754
No 67
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.1e-32 Score=194.03 Aligned_cols=160 Identities=33% Similarity=0.561 Sum_probs=136.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|||||||++++.++.+ ..+.++.+.++......+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999888 455566676777777788888999999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
|++++.+|+.+.. |+..+.... .++|+++|+||+|+... ...+...++...+++++++||++|.|++++|+.+.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~--~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (161)
T cd04124 81 DVTRKITYKNLSK-WYEELREYR--PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI 154 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhC--CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999998877 777665543 57999999999998432 13445566677789999999999999999999999
Q ss_pred HHHHcCC
Q 028292 173 LKILDTP 179 (211)
Q Consensus 173 ~~~~~~~ 179 (211)
+.+.+++
T Consensus 155 ~~~~~~~ 161 (161)
T cd04124 155 KLAVSYK 161 (161)
T ss_pred HHHHhcC
Confidence 9887653
No 68
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=9.8e-33 Score=196.61 Aligned_cols=159 Identities=33% Similarity=0.625 Sum_probs=136.6
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~ 94 (211)
|+|+|++|||||||++++.++.+ ..+.++.+.. ....+.+++..+.+.+|||||++.+..++..++.++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999988 4455555443 445667788889999999999999999999999999999999999
Q ss_pred CChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEeccCCC
Q 028292 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLECSAKTR 161 (211)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 161 (211)
+++++|+.+...|...+.... .++|+++|+||+|+... ..+..+++.+++...++ .++++||++|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 157 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQ 157 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCC
Confidence 999999998766888776654 58999999999998553 23777888889999986 9999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 028292 162 VNVEQCFEELVLKILD 177 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~~ 177 (211)
.|++++|+.+++.+.+
T Consensus 158 ~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 158 EGVREVFEEAIRAALN 173 (174)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 9999999999998764
No 69
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1.2e-32 Score=195.41 Aligned_cols=162 Identities=41% Similarity=0.709 Sum_probs=140.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
+..+||+++|++|||||||++++.++.+ ..+.++.+.++....+.+++..+.+.|||+||++.+..++..+++++|++|
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 3679999999999999999999999888 456678887777778888999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVE 165 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 165 (211)
+|||++++++|+.+.. |...+..... ..++|+++|+||+|+. .+.+..+++.+++..++. +++++||++|.|+.
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 83 LTFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 9999999999999877 5555543331 3578999999999985 556778888899988884 89999999999999
Q ss_pred HHHHHHHHH
Q 028292 166 QCFEELVLK 174 (211)
Q Consensus 166 ~~~~~i~~~ 174 (211)
++|.++++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999875
No 70
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-35 Score=195.86 Aligned_cols=174 Identities=37% Similarity=0.712 Sum_probs=159.4
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC---------CeEEEEEEEeCCCccccccc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG---------GKKMKLAIWDTAGQERFRTL 77 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~g~~~~~~~ 77 (211)
-+.++.|+.+.+|++|+|||+++.+++.++| .....++|.++..+.+.+. +..+.+++|||+|+++++++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 3456778999999999999999999999999 7788899999998888773 44588999999999999999
Q ss_pred ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEec
Q 028292 78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECS 157 (211)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (211)
...+++.+.+++++||+++..||.++.. |+..++.+.-..++-+++++||+|+++.+.++.+++.+++..+++|||++|
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS 162 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS 162 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence 9999999999999999999999999999 888888888788899999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCCcc
Q 028292 158 AKTRVNVEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 158 a~~~~~v~~~~~~i~~~~~~~~~~~ 182 (211)
|-+|.||++.++-++..++++.+.-
T Consensus 163 A~tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 163 ACTGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765443
No 71
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.8e-32 Score=197.82 Aligned_cols=158 Identities=23% Similarity=0.416 Sum_probs=129.4
Q ss_pred eEEEEEEcCCCCcHHHHHH-HHhhCCC------CCCCCccee-eeEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 028292 13 LFKLLLIGDSGVGKSTLLL-SFTSDTF------EELSPTIGV-DFKIKH--------VALGGKKMKLAIWDTAGQERFRT 76 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~-~l~~~~~------~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~ 76 (211)
.+||+++|+.|||||+|+. ++.+..+ ..+.|+.+. +..... ..+++..+.+.||||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4899999999999999995 6655432 345677652 222221 25688899999999999875 3
Q ss_pred cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-------------------Cccc
Q 028292 77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES-------------------ERVV 137 (211)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~ 137 (211)
....+++++|++|+|||++++.||+.+...|...+.... .++|+++|+||+|+.+ .+.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 456688999999999999999999999765877776654 5789999999999864 4678
Q ss_pred CHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 028292 138 SKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 174 (211)
..+++..+++.++++|++|||++|.||+++|..++++
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8999999999999999999999999999999999864
No 72
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=3.3e-32 Score=191.83 Aligned_cols=161 Identities=47% Similarity=0.777 Sum_probs=144.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
.+||+|+|++|||||||++++.+..+ ..+.++.+..+....+.+++..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998 44788888888888888999999999999999998988888899999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 171 (211)
+|++++++|+.... |+..+.... ..++|+++++||+|+.+......++...++...++.++++||++|.|+++++++|
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 81 YDITSEESFEKAKS-WVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred EECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999887 666666554 4789999999999997777778888888999989999999999999999999999
Q ss_pred HHHH
Q 028292 172 VLKI 175 (211)
Q Consensus 172 ~~~~ 175 (211)
++.+
T Consensus 159 ~~~l 162 (163)
T cd01860 159 AKKL 162 (163)
T ss_pred HHHh
Confidence 9875
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=3.5e-32 Score=196.92 Aligned_cols=167 Identities=26% Similarity=0.414 Sum_probs=134.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------ccccccC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSYYRG 84 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~ 84 (211)
+||+|+|.+|||||||++++.++.+ ..+.|+.+.++....+.+++..+.+++|||||...+... ....+..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999988 556777776666667778888899999999996544211 2234789
Q ss_pred ccEEEEEEECCChhcHHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HhCCcEEEeccCCC
Q 028292 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYS--TNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-EYGCLFLECSAKTR 161 (211)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 161 (211)
+|++|+|||++++++|+.+.. |+..+.... ...++|+++|+||+|+...+.+..++...++. .++++|+++||++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 999999999999999999887 555554432 24679999999999997766666666666654 56899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCc
Q 028292 162 VNVEQCFEELVLKILDTPSL 181 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~~~~~~ 181 (211)
.|++++|+.++..++.+...
T Consensus 160 ~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 160 WHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCHHHHHHHHHHHhhccCCC
Confidence 99999999999988865443
No 74
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=3.3e-32 Score=191.48 Aligned_cols=159 Identities=41% Similarity=0.703 Sum_probs=140.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|||||||++++++..+ ..+.++.+.++....+.+++..+.+.+||+||+..+..++..+++++|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999988 566778888888888888888889999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
|++++++|+.+.. |+..+.... ..+.|+++++||+|+........++...+....+++++++||+++.|+++++.+|.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 81 DITNRQSFDNTDK-WIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred ECcCHHHHHHHHH-HHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999887 565554433 34799999999999977777788888888888899999999999999999999998
Q ss_pred HH
Q 028292 173 LK 174 (211)
Q Consensus 173 ~~ 174 (211)
+.
T Consensus 159 ~~ 160 (161)
T cd01861 159 SA 160 (161)
T ss_pred Hh
Confidence 75
No 75
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=3.4e-32 Score=196.70 Aligned_cols=155 Identities=32% Similarity=0.558 Sum_probs=137.6
Q ss_pred EcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh
Q 028292 19 IGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR 97 (211)
Q Consensus 19 ~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (211)
+|+.|||||||+++++.+.+ ..+.++.|.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998888 56788999888888888899999999999999999999999999999999999999999
Q ss_pred hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 98 DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
.+|+.+.. |+..+.... .++|+++|+||+|+.. +.+..+. ..++...++.|+++||++|.||+++|.+|++.+.+
T Consensus 81 ~S~~~i~~-w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 81 VTYKNVPN-WHRDLVRVC--ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred HHHHHHHH-HHHHHHHhC--CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999987 888777654 5899999999999854 3344443 46778888999999999999999999999999976
Q ss_pred C
Q 028292 178 T 178 (211)
Q Consensus 178 ~ 178 (211)
.
T Consensus 156 ~ 156 (200)
T smart00176 156 D 156 (200)
T ss_pred c
Confidence 5
No 76
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=6.1e-32 Score=190.16 Aligned_cols=159 Identities=70% Similarity=1.102 Sum_probs=142.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|||||||++++.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999888 457788888888777888888899999999999999888889999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
|.+++.+|+.+.. |.+.+..+....++|+++|+||+|+. ......++..+++...+++++++||++|.|+++++++++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999999999888 88878777667889999999999986 344566788888888899999999999999999999998
Q ss_pred HH
Q 028292 173 LK 174 (211)
Q Consensus 173 ~~ 174 (211)
+.
T Consensus 159 ~~ 160 (161)
T cd01863 159 EK 160 (161)
T ss_pred Hh
Confidence 75
No 77
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=1.2e-31 Score=190.62 Aligned_cols=165 Identities=39% Similarity=0.714 Sum_probs=141.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+|+|++|||||||++++.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+..++..+++++|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999887 555667777777778888888899999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CcEEEeccCCCCCHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~ 168 (211)
|++++++++.... |...+..... ..++|+++|+||+|+..+..+..++...+....+ ++++++|+++|.|+++++
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 81 DVTNPKSFESLDS-WRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF 159 (172)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence 9999999988876 5555443332 3479999999999997666677788888888887 799999999999999999
Q ss_pred HHHHHHHHcCC
Q 028292 169 EELVLKILDTP 179 (211)
Q Consensus 169 ~~i~~~~~~~~ 179 (211)
+++.+.+.+..
T Consensus 160 ~~i~~~~~~~~ 170 (172)
T cd01862 160 ETIARKALEQE 170 (172)
T ss_pred HHHHHHHHhcc
Confidence 99999988763
No 78
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=1.1e-31 Score=191.03 Aligned_cols=157 Identities=32% Similarity=0.581 Sum_probs=134.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|+|||||++++.++.+ ..+.++. .+.....+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999999888 4444443 4555567788888899999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhCC-cEEEeccC
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYGC-LFLECSAK 159 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (211)
|++++.+|+.+...|...+... ..++|+++|+||+|+.. .+.+..+++..++...+. .++++||+
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~ 157 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSAL 157 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCC
Confidence 9999999999876577766643 35799999999999853 456778889999999887 99999999
Q ss_pred CCCCHHHHHHHHHH
Q 028292 160 TRVNVEQCFEELVL 173 (211)
Q Consensus 160 ~~~~v~~~~~~i~~ 173 (211)
+|.|++++|+.++-
T Consensus 158 ~~~~v~~lf~~~~~ 171 (173)
T cd04130 158 TQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999998764
No 79
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=1.2e-31 Score=190.92 Aligned_cols=159 Identities=34% Similarity=0.640 Sum_probs=136.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|+|||||++++..+.+ ..+.++.+ +.....+.+++..+.+.+||+||+..+...+..+++.+|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988 44555544 334446778888899999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEeccC
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLECSAK 159 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (211)
|++++.+|+.+...|...+... ..++|+++|+||+|+.+. ..+..+++..+++..++ +++++||+
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 157 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL 157 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence 9999999999987688777654 478999999999998543 35667888888888886 79999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028292 160 TRVNVEQCFEELVLKI 175 (211)
Q Consensus 160 ~~~~v~~~~~~i~~~~ 175 (211)
+|.|++++|+.+++.+
T Consensus 158 ~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 158 TQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999999876
No 80
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=7.4e-32 Score=188.80 Aligned_cols=154 Identities=23% Similarity=0.412 Sum_probs=127.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d 93 (211)
+||+++|+.|||||||++++..+.+....++.+..+ ...+.+++..+.+.+||++|++. ..+++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 589999999999999999999988843333333333 46678888889999999999864 235678999999999
Q ss_pred CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC--CCcccCHHHHHHHHHHh-CCcEEEeccCCCCCHHHHHHH
Q 028292 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE--SERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFEE 170 (211)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~~ 170 (211)
++++.+|+.+.. |+..+.......++|+++|+||+|+. ..+.+..+++.++++.. ++.|++|||++|.||+++|..
T Consensus 75 ~~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 75 LENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 999999999987 66777665544679999999999984 46778888888888876 489999999999999999999
Q ss_pred HHHH
Q 028292 171 LVLK 174 (211)
Q Consensus 171 i~~~ 174 (211)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 9864
No 81
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=1.4e-31 Score=189.65 Aligned_cols=161 Identities=35% Similarity=0.657 Sum_probs=139.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|.+|||||||++++.++.+ ..+.++.+.. ....+.+++..+.+.+||+||++.+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 7899999999999999999999888 5556666543 3566677888899999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CcEEEeccCCCCCHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG-CLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~i 171 (211)
|++++++++.+.. |...+.......++|+++++||.|+...+.+..++...+.+.++ ++++++||+++.|++++|.++
T Consensus 81 ~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 81 SVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 9999999999987 66666554435689999999999998777777888888888888 799999999999999999999
Q ss_pred HHHHH
Q 028292 172 VLKIL 176 (211)
Q Consensus 172 ~~~~~ 176 (211)
...+.
T Consensus 160 ~~~~~ 164 (168)
T cd04177 160 VRQII 164 (168)
T ss_pred HHHHh
Confidence 98764
No 82
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=1.2e-31 Score=197.47 Aligned_cols=165 Identities=28% Similarity=0.408 Sum_probs=137.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc-CccEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR-GAQGIIM 90 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~d~~il 90 (211)
+||+++|++|||||||+++++.+.+ ..+.++.+.++....+.+++..+.+.+||++|++. .....++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 5899999999999999999988877 34555555567777888888899999999999872 23344556 8999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 170 (211)
|||++++.+|+.+.. |+..+.......++|+++|+||+|+...+.+..++...++..++++++++||+++.||+++|++
T Consensus 79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 999999999998887 6666665544568999999999999887888888888888888999999999999999999999
Q ss_pred HHHHHHcCCCc
Q 028292 171 LVLKILDTPSL 181 (211)
Q Consensus 171 i~~~~~~~~~~ 181 (211)
+++.+......
T Consensus 158 l~~~~~~~~~~ 168 (221)
T cd04148 158 IVRQIRLRRDS 168 (221)
T ss_pred HHHHHHhhhcc
Confidence 99999754433
No 83
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=9.5e-32 Score=200.32 Aligned_cols=161 Identities=26% Similarity=0.460 Sum_probs=136.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|||||||+++++++.+ ..+.++.+ ++....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999988 45566665 566677888899999999999999998888888889999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhc--------CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-hCCcEEEeccCCCCC
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYS--------TNQDCIKLLVGNKVDKESERVVSKKEGIDFARE-YGCLFLECSAKTRVN 163 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~ 163 (211)
|++++++|+.+.. |...+.... ...++|+++|+||+|+...+.+..+++.+++.. .++.++++||++|.|
T Consensus 80 dv~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~g 158 (247)
T cd04143 80 SLDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSN 158 (247)
T ss_pred eCCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence 9999999999987 555554321 235799999999999977667788888777654 367899999999999
Q ss_pred HHHHHHHHHHHHH
Q 028292 164 VEQCFEELVLKIL 176 (211)
Q Consensus 164 v~~~~~~i~~~~~ 176 (211)
++++|++|...+.
T Consensus 159 I~elf~~L~~~~~ 171 (247)
T cd04143 159 LDEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 84
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=1.3e-31 Score=189.06 Aligned_cols=159 Identities=31% Similarity=0.542 Sum_probs=137.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC--CC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD--TF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~--~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
+||+++|++|||||||++++... .+ ..+.++.+.++....+.+. +..+.+.+||+||++.+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 44 6777888888777777664 56789999999999998888999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
+|||++++++|+.+.. |+..+.... .++|+++|+||+|+.+...+...++..+...++++++++||+++.|++++|+
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 157 (164)
T cd04101 81 LVYDVSNKASFENCSR-WVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFE 157 (164)
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHH
Confidence 9999999999998876 666666543 5699999999999977777777777777778889999999999999999999
Q ss_pred HHHHHH
Q 028292 170 ELVLKI 175 (211)
Q Consensus 170 ~i~~~~ 175 (211)
++.+.+
T Consensus 158 ~l~~~~ 163 (164)
T cd04101 158 SLARAF 163 (164)
T ss_pred HHHHHh
Confidence 998875
No 85
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.2e-31 Score=189.98 Aligned_cols=163 Identities=23% Similarity=0.301 Sum_probs=137.4
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
.+.+||+++|.+|||||||+++++++.+ ..+.++.+..+....+.+++..+.+.+||++|++.+..++..++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 3689999999999999999999999888 46778888777777788888888999999999999988899999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHHHH
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVEQC 167 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~ 167 (211)
++|||++++.+|+.+.. |...+.. ..++|+++|+||+|+.+...+...+..+++..+++ .++++||+++.|++++
T Consensus 82 llv~d~~~~~s~~~~~~-~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (169)
T cd01892 82 CLVYDSSDPKSFSYCAE-VYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNEL 157 (169)
T ss_pred EEEEeCCCHHHHHHHHH-HHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHH
Confidence 99999999999998876 5544321 34799999999999965554444455667777777 4799999999999999
Q ss_pred HHHHHHHHHc
Q 028292 168 FEELVLKILD 177 (211)
Q Consensus 168 ~~~i~~~~~~ 177 (211)
|+.+.+.+..
T Consensus 158 f~~l~~~~~~ 167 (169)
T cd01892 158 FTKLATAAQY 167 (169)
T ss_pred HHHHHHHhhC
Confidence 9999998764
No 86
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-32 Score=176.71 Aligned_cols=169 Identities=49% Similarity=0.835 Sum_probs=157.8
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
.++.+|-+++|+-|+|||.|++.+...+| ....++.|.++....+.+.+..+.++||||.|+++++...+.+++++.+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 45778999999999999999999999999 78889999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
+.|||++.+.++.++.. |+...+... +++..+++++||.|++..+.+..+++.+|+.+.++.|+++||++|.+|++.|
T Consensus 88 lmvyditrrstynhlss-wl~dar~lt-npnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedaf 165 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSS-WLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAF 165 (215)
T ss_pred eEEEEehhhhhhhhHHH-HHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHH
Confidence 99999999999999888 777777666 8889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 028292 169 EELVLKILDTPS 180 (211)
Q Consensus 169 ~~i~~~~~~~~~ 180 (211)
-...+.++++-+
T Consensus 166 le~akkiyqniq 177 (215)
T KOG0097|consen 166 LETAKKIYQNIQ 177 (215)
T ss_pred HHHHHHHHHhhh
Confidence 988888886543
No 87
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=4e-31 Score=185.97 Aligned_cols=160 Identities=42% Similarity=0.748 Sum_probs=138.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|+|||||++++++..+ ....++.+.+.....+.+.+..+.+.+||+||++.+...+..+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999887 444556556666667777788889999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
|++++++++.+.. |...+.... ..++|+++++||+|+.....+..++..++....+++++++|++++.|++++++++.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 81 DITDADSFQKVKK-WIKELKQMR-GNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999998877 666666655 34899999999999987777777888888888899999999999999999999998
Q ss_pred HHH
Q 028292 173 LKI 175 (211)
Q Consensus 173 ~~~ 175 (211)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04123 159 KRM 161 (162)
T ss_pred HHh
Confidence 765
No 88
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=2e-31 Score=188.33 Aligned_cols=160 Identities=34% Similarity=0.566 Sum_probs=133.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCccEEEEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-FRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~~ilv~ 92 (211)
||+++|++|||||||+++++...+ ..+.++.+..+ ...+.+++..+.+.+||+||+.. .......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998877 45555554333 45567788889999999999875 3445667789999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC-CHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV-NVEQCFEE 170 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~~~~ 170 (211)
|++++.+|+.+.. |+..+..... ..++|+++|+||+|+.+.+.+..+++..++...+.+|+++||+++. |++++|++
T Consensus 80 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 80 SITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence 9999999999887 6766665542 4579999999999997777788888889999999999999999995 99999999
Q ss_pred HHHHHH
Q 028292 171 LVLKIL 176 (211)
Q Consensus 171 i~~~~~ 176 (211)
+.+.+.
T Consensus 159 l~~~~~ 164 (165)
T cd04146 159 LCREVR 164 (165)
T ss_pred HHHHHh
Confidence 998764
No 89
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.4e-33 Score=181.37 Aligned_cols=172 Identities=37% Similarity=0.670 Sum_probs=159.6
Q ss_pred EEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC
Q 028292 18 LIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT 95 (211)
Q Consensus 18 v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~ 95 (211)
++|++++|||.|+-|+..+.+ ....++.|.++....+..++..+.+++|||.|++++++....+++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999999999988 677889999999999999999999999999999999999999999999999999999
Q ss_pred ChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292 96 RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 96 ~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 175 (211)
+..||++... |+..+..+. ...+.+++++||+|+.+++.+..++...++..+++||.++||++|-+|+..|-.|.+.+
T Consensus 82 nkasfdn~~~-wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 82 NKASFDNCQA-WLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred cchhHHHHHH-HHHHHHHHH-HhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence 9999999999 999999998 78899999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCcccCCCCCccc
Q 028292 176 LDTPSLLSEGSSGVKK 191 (211)
Q Consensus 176 ~~~~~~~~~~~~~~~~ 191 (211)
.+..-..+++.+..-.
T Consensus 160 ~k~~~~~~~~~~~~~~ 175 (192)
T KOG0083|consen 160 KKLKMGAPPEGEFADH 175 (192)
T ss_pred HHhccCCCCCCccccc
Confidence 8877766655544433
No 90
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=5.3e-31 Score=191.31 Aligned_cols=193 Identities=27% Similarity=0.428 Sum_probs=144.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d 93 (211)
||+++|++|||||||++++++..+. .+.++.. +.....+.+.+..+.+++||+||+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 6899999999999999999998884 3444443 4555667778888899999999999998888889999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-CcccCHHHHHHHHH-HhCCcEEEeccCCCCCHHHHHHHH
Q 028292 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES-ERVVSKKEGIDFAR-EYGCLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~~~~~i 171 (211)
++++.+|+.+.. |+..+.......++|+++|+||+|+.. ...+..++..+... .++++++++||++|.|++++|++|
T Consensus 80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 158 (198)
T cd04147 80 VDDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKEL 158 (198)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHH
Confidence 999999999887 555555554356899999999999865 35555555554443 456789999999999999999999
Q ss_pred HHHHHcCCCcccCCCCCcccccccCCCCCCCCCCCcccC
Q 028292 172 VLKILDTPSLLSEGSSGVKKNIFKESPPQNDASTTGCCS 210 (211)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 210 (211)
.+.+.......+..+... +....+...+.+..+...|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 196 (198)
T cd04147 159 LRQANLPYNLSPALRRRR-ESLPSEIQRRPPMNKTNSCS 196 (198)
T ss_pred HHHhhcccccchhhHHHH-hhccHhhhcCCCCCCCCccc
Confidence 998875444443222222 22223344444444444454
No 91
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=1.2e-30 Score=187.84 Aligned_cols=162 Identities=35% Similarity=0.590 Sum_probs=134.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
.||+|+|++|+|||||++++..+.+ ..+.++.+..+ ...+.+++..+.+.+||++|++.+.......+.++|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998777 44445444333 335667788889999999999888877777889999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC----------CcccCHHHHHHHHHHhCC-cEEEeccCCC
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES----------ERVVSKKEGIDFAREYGC-LFLECSAKTR 161 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 161 (211)
|+++.++|+.+...|...+.... .++|+++|+||+|+.+ .+.+..+++..+++.++. +++++||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 99999999999866888887654 5699999999999854 234556778888888885 8999999999
Q ss_pred CCHHHHHHHHHHHHHcC
Q 028292 162 VNVEQCFEELVLKILDT 178 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~~~ 178 (211)
.|++++|.++.+.+...
T Consensus 159 ~~v~~~f~~l~~~~~~~ 175 (187)
T cd04129 159 EGVDDVFEAATRAALLV 175 (187)
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 99999999999888643
No 92
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.5e-30 Score=184.53 Aligned_cols=163 Identities=47% Similarity=0.835 Sum_probs=142.1
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
...++|+++|++|||||||++++..+.+ ..+.++.+.++....+.+++..+.+.+||+||+..+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999998877 556777777787778888998899999999999999988889999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+.......+......+++++||++|.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 162 (169)
T cd04114 85 LTYDITCEESFRCLPE-WLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFL 162 (169)
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999988877 777666554 45799999999999977777777777777777778999999999999999999
Q ss_pred HHHHHH
Q 028292 170 ELVLKI 175 (211)
Q Consensus 170 ~i~~~~ 175 (211)
+|.+.+
T Consensus 163 ~i~~~~ 168 (169)
T cd04114 163 DLACRL 168 (169)
T ss_pred HHHHHh
Confidence 998764
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=1.1e-30 Score=184.15 Aligned_cols=162 Identities=40% Similarity=0.659 Sum_probs=136.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|||||||+++++...+ ..+.++.+ ........+++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999887 44444443 334455677888899999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
|++++.+|+.+..++..... .....++|+++|+||+|+.........+...+...++++++++||++++|++++|+++.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~-~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 80 SITDMESFTATAEFREQILR-VKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999884444444 33256899999999999976555667777788888889999999999999999999999
Q ss_pred HHHHc
Q 028292 173 LKILD 177 (211)
Q Consensus 173 ~~~~~ 177 (211)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T cd04139 159 REIRQ 163 (164)
T ss_pred HHHHh
Confidence 88753
No 94
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.98 E-value=2.2e-31 Score=188.46 Aligned_cols=155 Identities=24% Similarity=0.364 Sum_probs=124.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
+.++|+++|++|||||||++++..+.+..+.++.+.++.. +.. ..+.+.+||++|++.+...+..++.++|++|+|
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999988776667777765542 222 457899999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----hCCcEEEeccCCCCCHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE-----YGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~~ 166 (211)
||++++.+|+.+..++...+.... ..++|+++|+||+|+... +..+++..+... ..+.++++||++|.|+++
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~ 160 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDRE-MRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 160 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHh-hcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence 999999999988875655554322 357899999999998543 445555554321 234789999999999999
Q ss_pred HHHHHHH
Q 028292 167 CFEELVL 173 (211)
Q Consensus 167 ~~~~i~~ 173 (211)
+|+||.+
T Consensus 161 ~~~~l~~ 167 (168)
T cd04149 161 GLTWLSS 167 (168)
T ss_pred HHHHHhc
Confidence 9999864
No 95
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.98 E-value=1.3e-30 Score=182.46 Aligned_cols=157 Identities=56% Similarity=0.943 Sum_probs=140.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++++|||||++++.+..+ ..+.++.+.++....+...+..+.+.+||+||+..+...+..+++++|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988 445788888888888888888899999999999998889999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
|++++++++.+.. |...+.... ..++|+++++||+|+........++...+....+++++++|++++.|+++++.+|.
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDK-WLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 9999999998888 776666554 36799999999999975666778888889888899999999999999999999986
No 96
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.98 E-value=7.3e-31 Score=186.08 Aligned_cols=160 Identities=26% Similarity=0.457 Sum_probs=127.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~ 94 (211)
||+++|.++||||||++++.+..+..+.++.+..+. .+.. ..+.+.+||+||+..+...+..+++++|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 689999999999999999999877667777765543 2332 457899999999999999999999999999999999
Q ss_pred CChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC------CcEEEeccCCCCCHHHHH
Q 028292 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG------CLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~ 168 (211)
++++++.++..++........ ..+.|+++|+||+|+.. .+..+++.++....+ +.++++||++|.|++++|
T Consensus 77 s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999998885555544322 35689999999999854 355666665553222 368899999999999999
Q ss_pred HHHHHHHHcCCCc
Q 028292 169 EELVLKILDTPSL 181 (211)
Q Consensus 169 ~~i~~~~~~~~~~ 181 (211)
+||.+.+.+..+.
T Consensus 154 ~~l~~~~~~~~~~ 166 (169)
T cd04158 154 DWLSRQLVAAGVL 166 (169)
T ss_pred HHHHHHHhhcccc
Confidence 9999998877654
No 97
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=4e-30 Score=183.32 Aligned_cols=159 Identities=34% Similarity=0.647 Sum_probs=133.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
.||+++|++|||||||++++.+..+ ..+.++.+..+ ...+.+++..+.+.+|||+|++.+...+...+.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999888 45666665444 345677888899999999999999888888899999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEeccC
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLECSAK 159 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (211)
|++++++|+.+...|...+.... .++|+++|+||+|+.+. ..+...+..+++...+. .++++||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 99999999998766777776543 57999999999998542 23445677777777775 89999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028292 160 TRVNVEQCFEELVLKI 175 (211)
Q Consensus 160 ~~~~v~~~~~~i~~~~ 175 (211)
+|.|++++|.+|.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998765
No 98
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=8.3e-31 Score=187.48 Aligned_cols=161 Identities=23% Similarity=0.356 Sum_probs=124.6
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
...+||+++|..+||||||++++..+.+..+.|+.+..+. .+. ...+.+++||+||++.+..+|..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4568999999999999999999998877666777775543 233 345789999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-----CCcEEEeccCCCCCHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-----GCLFLECSAKTRVNVE 165 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~ 165 (211)
|||+++++++......+...+.... ..++|++|++||+|+.... ..++..+...-. .+.++++||++|+|++
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~-~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDE-LRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHh-hCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 9999999999888774554443222 3579999999999986543 333333222111 1246689999999999
Q ss_pred HHHHHHHHHHHcC
Q 028292 166 QCFEELVLKILDT 178 (211)
Q Consensus 166 ~~~~~i~~~~~~~ 178 (211)
++|+||.+.+..+
T Consensus 168 e~~~~l~~~~~~~ 180 (181)
T PLN00223 168 EGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999887653
No 99
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=186.97 Aligned_cols=168 Identities=39% Similarity=0.612 Sum_probs=150.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
+.+||+++|.+|+|||+|..++....+ ..+.|+.. +.+...+.++++.+.+.|+||+|++++..+...++.++|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999 56666666 7788888999999999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 170 (211)
||+++++.||+.+..+ +..+........+|+++||||+|+...+.+..+++..++..++++|+++||+.+.+++++|..
T Consensus 81 Vysitd~~SF~~~~~l-~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~ 159 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQL-REQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYE 159 (196)
T ss_pred EEECCCHHHHHHHHHH-HHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHH
Confidence 9999999999999994 444444443667899999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCc
Q 028292 171 LVLKILDTPSL 181 (211)
Q Consensus 171 i~~~~~~~~~~ 181 (211)
|++.+......
T Consensus 160 L~r~~~~~~~~ 170 (196)
T KOG0395|consen 160 LVREIRLPREG 170 (196)
T ss_pred HHHHHHhhhcc
Confidence 99998874443
No 100
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=2.1e-31 Score=189.81 Aligned_cols=159 Identities=23% Similarity=0.367 Sum_probs=123.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
...+||+++|.+|||||||++++..+.+..+.|+.+..+.. +.. ..+.+.+||+||+..+..+|..+++++|++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 45699999999999999999999888776667777765543 233 45789999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~ 165 (211)
|||++++.+++....++...+.... ..++|++||+||+|+.+.. ..++..+.. ....+.++++||++|.|++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNEDE-LRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCHh-hcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 9999999999988885555554322 3578999999999985432 223322221 1123357789999999999
Q ss_pred HHHHHHHHHHH
Q 028292 166 QCFEELVLKIL 176 (211)
Q Consensus 166 ~~~~~i~~~~~ 176 (211)
++|+||.+.+.
T Consensus 164 e~~~~l~~~~~ 174 (175)
T smart00177 164 EGLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHHhc
Confidence 99999988753
No 101
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.7e-31 Score=187.42 Aligned_cols=153 Identities=22% Similarity=0.390 Sum_probs=119.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d 93 (211)
+||+++|.++||||||++++..+.+..+.|+.+..... +.. ..+.+.+||+||++.+..++..+++++|++|+|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 58999999999999999999888876677777755432 332 45789999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH-HHHH----HhCCcEEEeccCCCCCHHHHH
Q 028292 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGI-DFAR----EYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~----~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
++++.+|+.+..++...+.... ..++|+++++||+|+.+.. ..++.. .+.. ..++.++++||++|.|++++|
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDE-LRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHH-hcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 9999999988875655554322 3568999999999985432 222322 2211 123457899999999999999
Q ss_pred HHHHH
Q 028292 169 EELVL 173 (211)
Q Consensus 169 ~~i~~ 173 (211)
+||.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 102
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=4.8e-31 Score=188.91 Aligned_cols=161 Identities=24% Similarity=0.416 Sum_probs=125.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+.+||+++|++|||||||++++..+.+..+.++.+..+.. +.. ..+.+.+||+||++.+..++..+++++|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVET--VEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35689999999999999999999888876667777755542 332 45789999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~ 165 (211)
|||++++++|......+...+.... ..++|++||+||.|+.+.. ..++..... ....+.++++||++|.|++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDE-LRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHh-hcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 9999999999988875655544322 3568999999999985432 222222211 1122357799999999999
Q ss_pred HHHHHHHHHHHcC
Q 028292 166 QCFEELVLKILDT 178 (211)
Q Consensus 166 ~~~~~i~~~~~~~ 178 (211)
++|+||.+.+.+.
T Consensus 168 e~~~~l~~~i~~~ 180 (182)
T PTZ00133 168 EGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 103
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=4.1e-30 Score=180.46 Aligned_cols=158 Identities=41% Similarity=0.696 Sum_probs=135.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d 93 (211)
||+++|++|||||||++++++..+ ..+.++.+ +.....+.+.+..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998877 45555555 5556667777778899999999999888889999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 028292 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVL 173 (211)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 173 (211)
.++++++..+..++ ..+.......++|+++|+||+|+.....+..+++..+....+.+++++|++++.|+++++++|++
T Consensus 80 ~~~~~s~~~~~~~~-~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 80 ITDRESFEEIKGYR-EQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CCCHHHHHHHHHHH-HHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence 99999999988844 44444442468999999999999776777888888898888899999999999999999999987
Q ss_pred H
Q 028292 174 K 174 (211)
Q Consensus 174 ~ 174 (211)
.
T Consensus 159 ~ 159 (160)
T cd00876 159 E 159 (160)
T ss_pred h
Confidence 5
No 104
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=8.7e-30 Score=182.39 Aligned_cols=165 Identities=38% Similarity=0.597 Sum_probs=138.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
.||+++|++|+|||||++++++..+ ..+.++.+..+ ...+.+.+..+.+.+||+||+.++...+..++..+++++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998887 44555554333 455667777889999999999999988989999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
|.++..+++.+..++...+.... ..+.|+++|+||+|+...+.+...+...++..++.+++++||+++.|+.+++.++.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLG-KESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999885555555433 56789999999999976666777677778888889999999999999999999999
Q ss_pred HHHHcCCC
Q 028292 173 LKILDTPS 180 (211)
Q Consensus 173 ~~~~~~~~ 180 (211)
+.+...+.
T Consensus 160 ~~~~~~~~ 167 (180)
T cd04137 160 EEIEKVEN 167 (180)
T ss_pred HHHHHhcC
Confidence 99875543
No 105
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.2e-30 Score=187.13 Aligned_cols=164 Identities=26% Similarity=0.364 Sum_probs=128.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
.+||+++|++|||||||++++....+....++.+.+.....+.. ++..+.+.+|||||++.+..+|..+++++|++|+|
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 82 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV 82 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999998888656677776665555544 34668899999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH--H----hCCcEEEeccCCCCCHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR--E----YGCLFLECSAKTRVNVE 165 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~----~~~~~~~~Sa~~~~~v~ 165 (211)
+|++++.+++.+.. |+..+.......++|+++|+||+|+... ...++...+.. . .+++++++||++|+|++
T Consensus 83 ~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~ 159 (183)
T cd04152 83 VDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQ 159 (183)
T ss_pred EECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCHH
Confidence 99999998888776 4444444333567999999999998543 23333333322 1 12468999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028292 166 QCFEELVLKILDTP 179 (211)
Q Consensus 166 ~~~~~i~~~~~~~~ 179 (211)
+++++|.+.+.+.+
T Consensus 160 ~l~~~l~~~l~~~~ 173 (183)
T cd04152 160 EGLEKLYEMILKRR 173 (183)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999986443
No 106
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=9.8e-30 Score=180.55 Aligned_cols=157 Identities=34% Similarity=0.644 Sum_probs=132.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+||+++|++|||||||+++|++..+ ..+.++.. +.........+..+.+.+||+||++.+.......++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999988 44444443 444555677788899999999999988888888889999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-----------ccCHHHHHHHHHHhCC-cEEEeccCC
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER-----------VVSKKEGIDFAREYGC-LFLECSAKT 160 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (211)
|++++++|......|...+.... .++|+++|+||+|+.... .+..+++.++...+++ +++++||++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALT 157 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCC
Confidence 99999999988877887776654 489999999999986544 3456777888888887 999999999
Q ss_pred CCCHHHHHHHHHH
Q 028292 161 RVNVEQCFEELVL 173 (211)
Q Consensus 161 ~~~v~~~~~~i~~ 173 (211)
|.|+++++++|.+
T Consensus 158 ~~gi~~l~~~i~~ 170 (171)
T cd00157 158 QEGVKEVFEEAIR 170 (171)
T ss_pred CCCHHHHHHHHhh
Confidence 9999999999875
No 107
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=3.8e-30 Score=183.09 Aligned_cols=157 Identities=24% Similarity=0.338 Sum_probs=124.1
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
....++|+++|++|||||||++++.+..+..+.++.+... ..+.++ .+.+.+||+||++.+...+..++.++|+++
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 3456899999999999999999999887766777777433 334444 477999999999988888999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEeccCCCCCH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECSAKTRVNV 164 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v 164 (211)
+|||++++.+|.....++...+.... ..++|+++|+||+|+.+.. ..+++.++.. ..+++++++||++|.|+
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEER-LAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 99999999999888774444443222 4689999999999986543 3444444442 34568999999999999
Q ss_pred HHHHHHHHH
Q 028292 165 EQCFEELVL 173 (211)
Q Consensus 165 ~~~~~~i~~ 173 (211)
+++|++++.
T Consensus 164 ~~l~~~l~~ 172 (173)
T cd04154 164 LQGIDWLVD 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999864
No 108
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.5e-29 Score=178.85 Aligned_cols=161 Identities=29% Similarity=0.413 Sum_probs=126.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d 93 (211)
+||+++|++|||||||++++.++.+....+..... ......+.+..+.+.+|||||...+...+..++..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPE-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccc-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 48999999999999999999999884433433222 23444566778899999999998887777778899999999999
Q ss_pred CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHhC--CcEEEeccCCCCCHHHHHH
Q 028292 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS--KKEGIDFAREYG--CLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~ 169 (211)
++++.+|+.+...|...+.... .++|+++|+||+|+.+..... .++.......++ ..++++||+++.|++++|.
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 9999999998766888777654 489999999999996654421 223333333333 3799999999999999999
Q ss_pred HHHHHHHc
Q 028292 170 ELVLKILD 177 (211)
Q Consensus 170 ~i~~~~~~ 177 (211)
.+.+.+.+
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99988765
No 109
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=2.7e-30 Score=181.53 Aligned_cols=167 Identities=34% Similarity=0.603 Sum_probs=152.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
...+|++|+|+.++|||+|+-.+..+.| ..+.|+.. +-+...+.++ +..+.+.+|||+|+++|+.+++..+.++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3579999999999999999999999999 66777776 7777778884 9999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhC-CcEEE
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYG-CLFLE 155 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 155 (211)
++||++.+++||+++...|...+..+. +++|+|+||+|.|+.. ...+..+++..++++.| +.|++
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~E 158 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLE 158 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeee
Confidence 999999999999999999999999887 9999999999999963 24678889999999999 58999
Q ss_pred eccCCCCCHHHHHHHHHHHHHcCCC
Q 028292 156 CSAKTRVNVEQCFEELVLKILDTPS 180 (211)
Q Consensus 156 ~Sa~~~~~v~~~~~~i~~~~~~~~~ 180 (211)
|||++..|++++|+..+..+....+
T Consensus 159 cSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 159 CSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred ehhhhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999999987765
No 110
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1.8e-28 Score=180.33 Aligned_cols=171 Identities=33% Similarity=0.549 Sum_probs=144.9
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
.+....+||+++|++|||||||+++++.+.+ ..+.++.+.++....+..++..+.+.+||++|++.+...+..++.+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 4455679999999999999999999888877 678889998888888888889999999999999999888888999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (211)
++|+|||+++..+|..+.. |+..+.... .++|+++++||+|+.+. .+..+ ...+....++.++++||++|.|+++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~--~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPN-WHRDIVRVC--ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEK 158 (215)
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999887 666665443 57899999999998543 23333 3456777888999999999999999
Q ss_pred HHHHHHHHHHcCCCccc
Q 028292 167 CFEELVLKILDTPSLLS 183 (211)
Q Consensus 167 ~~~~i~~~~~~~~~~~~ 183 (211)
.|.+|.+.+.......-
T Consensus 159 ~f~~ia~~l~~~p~~~~ 175 (215)
T PTZ00132 159 PFLWLARRLTNDPNLVF 175 (215)
T ss_pred HHHHHHHHHhhccccee
Confidence 99999999987766543
No 111
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=4e-30 Score=181.33 Aligned_cols=152 Identities=24% Similarity=0.342 Sum_probs=121.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d 93 (211)
.|+++|++|||||||++++.+..+ ..+.|+.+... ..++...+.+.+||++|+..+..++..+++++|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 379999999999999999998877 56677777542 2344566889999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH----HHHHHHHHHhCCcEEEeccCC------CCC
Q 028292 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK----KEGIDFAREYGCLFLECSAKT------RVN 163 (211)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~~------~~~ 163 (211)
.+++.+|.....++.. +... ..++|+++|+||+|+...+.+.. .++..++.+.++.++++||++ ++|
T Consensus 77 ~t~~~s~~~~~~~l~~-~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~ 153 (164)
T cd04162 77 SADSERLPLARQELHQ-LLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEA 153 (164)
T ss_pred CCCHHHHHHHHHHHHH-HHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHH
Confidence 9999999888774433 3322 26899999999999966554322 223455566678899999888 999
Q ss_pred HHHHHHHHHH
Q 028292 164 VEQCFEELVL 173 (211)
Q Consensus 164 v~~~~~~i~~ 173 (211)
|+++|+.+++
T Consensus 154 v~~~~~~~~~ 163 (164)
T cd04162 154 VKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 112
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.97 E-value=7.2e-29 Score=165.96 Aligned_cols=166 Identities=22% Similarity=0.339 Sum_probs=139.0
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (211)
+..++.++|+++|..|+||||++++|.+...+...|+.|.......+ ..+++++||.+|+..++..|+.||..+|+
T Consensus 11 k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 11 KLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred HhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 44567999999999999999999999999988899999976666555 56889999999999999999999999999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc---ccCHH-HHHHHHHHhCCcEEEeccCCCCC
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER---VVSKK-EGIDFAREYGCLFLECSAKTRVN 163 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~-~~~~~~~~~~~~~~~~Sa~~~~~ 163 (211)
+|+|+|.+|+..+++....+...+.... ..+.|++|++||.|+.+.- .+... +...++.+..++++.|||.+|++
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~eer-laG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~ 165 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEER-LAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGED 165 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhhh-hcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEecccccc
Confidence 9999999999999988875666555333 6779999999999996432 22211 23344577789999999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 028292 164 VEQCFEELVLKILDT 178 (211)
Q Consensus 164 v~~~~~~i~~~~~~~ 178 (211)
+.+-++|+...++++
T Consensus 166 l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 166 LLEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999873
No 113
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.97 E-value=5.2e-29 Score=177.35 Aligned_cols=155 Identities=23% Similarity=0.397 Sum_probs=121.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
..++|+++|++|+|||||+++++.+.+..+.++.+.++.. +.++ ...+.+||+||+..+...+..+++++|++|+|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEE--IVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEE--EEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 3589999999999999999999998886667777765543 3333 57899999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-HH----HHhCCcEEEeccCCCCCHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID-FA----REYGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~v~~ 166 (211)
+|+++++++......+...+.... ..++|+++++||+|+.+. ...++..+ +. ...+++++++||++|.|+++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 999999998887775555544322 357999999999998552 23333222 21 23445799999999999999
Q ss_pred HHHHHHH
Q 028292 167 CFEELVL 173 (211)
Q Consensus 167 ~~~~i~~ 173 (211)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999964
No 114
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=2.9e-29 Score=176.00 Aligned_cols=152 Identities=24% Similarity=0.371 Sum_probs=116.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~ 94 (211)
||+++|++++|||||++++..+.+..+.++.+.+.. .+.. ....+.+||+||+..+..++..++..+|++|+|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 689999999999999999988877555666665443 2332 457899999999999999999999999999999999
Q ss_pred CChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCCHHHHHH
Q 028292 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
+++.++.....++...+.... ..++|+++|+||+|+.... ...+..... ...+.+++++||++|.|++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEE-LKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchh-hcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 999888776665555544322 3579999999999985433 222222111 11234699999999999999999
Q ss_pred HHHH
Q 028292 170 ELVL 173 (211)
Q Consensus 170 ~i~~ 173 (211)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=3.8e-29 Score=176.00 Aligned_cols=153 Identities=20% Similarity=0.316 Sum_probs=115.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
+|+++|++|||||||++++.+... ..+.++.+..... +. ...+.+.+||+||+..+..++..+++++|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 4567777754432 22 34578999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEeccCCCCCHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~ 166 (211)
|++++.++.....++........ ...++|+++|+||+|+.+... ..+...... ...+.++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 99999998877763433333211 135799999999999865422 222221111 1234689999999999999
Q ss_pred HHHHHHH
Q 028292 167 CFEELVL 173 (211)
Q Consensus 167 ~~~~i~~ 173 (211)
+|+||.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999865
No 116
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=2.7e-28 Score=173.55 Aligned_cols=159 Identities=31% Similarity=0.473 Sum_probs=128.9
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
..+.++|+++|..|||||||++++..+......||.|.... .+.+.+ +.+.+||.+|+..++..|+.++.++|++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~--~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIE--EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEE--EEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccc--eeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 36789999999999999999999998877667777775444 444444 67899999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH------HhCCcEEEeccCCCCC
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR------EYGCLFLECSAKTRVN 163 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~ 163 (211)
+|+|.++++.+......+...+.... ..++|++|++||+|+.+. ...+++..... ...+.++.|||.+|+|
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~-~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPE-LKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGG-GTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEecccceeecccccchhhhcchhh-cccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 99999999999988886666665433 568999999999998553 34444443332 2334689999999999
Q ss_pred HHHHHHHHHHHH
Q 028292 164 VEQCFEELVLKI 175 (211)
Q Consensus 164 v~~~~~~i~~~~ 175 (211)
+.+.++||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999874
No 117
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=1.2e-28 Score=177.97 Aligned_cols=157 Identities=23% Similarity=0.336 Sum_probs=124.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+.++|+++|++|||||||++++.+..+..+.++.+... ..+.+++ ..+.+||+||+..+...|..+++++|++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 356899999999999999999999888766666666433 3444443 578899999999888888899999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH----------------hCCcEE
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE----------------YGCLFL 154 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~ 154 (211)
|+|.++..++.....++...+.. ....+.|+++++||+|+.. .+..++....... ..+.++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~-~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSD-EELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcC-ccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 99999999998777745554443 2246799999999999854 3455666555532 224689
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 028292 155 ECSAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 155 ~~Sa~~~~~v~~~~~~i~~~ 174 (211)
++||++|+|++++|+||.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999875
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=8.3e-29 Score=174.00 Aligned_cols=153 Identities=24% Similarity=0.396 Sum_probs=118.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~ 94 (211)
+|+++|++|||||||++++.+..+....++.+.++.. +.. ...+.+.+||+||+..+...+..++..+|++|+|+|.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~--~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEM--LQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEE--EEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 5899999999999999999999886666777654433 332 2457899999999999888899999999999999999
Q ss_pred CChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH------HHHhCCcEEEeccCCCCCHHHHH
Q 028292 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDF------AREYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
+++.++.....++...+.... ..+.|+++|+||+|+.... ..++.... ....+++++++||++|+|++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 78 SDEARLDESQKELKHILKNEH-IKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999988888775555444322 3689999999999985422 22222211 12234579999999999999999
Q ss_pred HHHHH
Q 028292 169 EELVL 173 (211)
Q Consensus 169 ~~i~~ 173 (211)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 119
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=4.1e-28 Score=175.35 Aligned_cols=148 Identities=26% Similarity=0.404 Sum_probs=122.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC-----CeEEEEEEEeCCCcccccccccccccCccE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-----GKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (211)
+||+++|+.+||||||++++.++.+ ..+.++.+.++....+.+. +..+.+.|||++|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999988 6677888877777776663 567899999999999999999999999999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhhc------------------CCCCCcEEEEEeCCCCCCCcccCHHH----HHHH
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLYS------------------TNQDCIKLLVGNKVDKESERVVSKKE----GIDF 145 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~------------------~~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~ 145 (211)
+|+|||++++.||+++.. |+..+.... ...++|++||+||+|+.+.+.+..+. ...+
T Consensus 81 iIlVyDvtn~~Sf~~l~~-W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQR-WSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHH-HHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhH
Confidence 999999999999999987 776665431 12469999999999997666555543 3356
Q ss_pred HHHhCCcEEEeccCCCC
Q 028292 146 AREYGCLFLECSAKTRV 162 (211)
Q Consensus 146 ~~~~~~~~~~~Sa~~~~ 162 (211)
+...+++.++.++.+..
T Consensus 160 a~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 160 AEQGNAEEINLNCTNGR 176 (202)
T ss_pred HHhcCCceEEEecCCcc
Confidence 77789999889887653
No 120
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.96 E-value=1.4e-28 Score=172.57 Aligned_cols=152 Identities=26% Similarity=0.407 Sum_probs=120.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~ 94 (211)
||+++|.+|||||||++++++.....+.++.+..... +.+. .+.+.+||+||+..+...+..++..+|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET--VEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE--EEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 6899999999999999999998876677777755443 3333 46799999999999999999999999999999999
Q ss_pred CChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEeccCCCCCHHHHHH
Q 028292 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
+++.++.....++........ ..+.|+++++||+|+.... ..++..+... ...++++++||++|.|++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999988775555544332 5789999999999986543 2233333222 2346899999999999999999
Q ss_pred HHHH
Q 028292 170 ELVL 173 (211)
Q Consensus 170 ~i~~ 173 (211)
+|+.
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 121
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=7.5e-29 Score=175.36 Aligned_cols=154 Identities=23% Similarity=0.360 Sum_probs=117.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~ 94 (211)
+|+++|++|||||||++++.+.....+.++.+... ..+.. ..+.+++||+||+..+..+|..+++++|++|+|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 48999999999999999999773366778877543 33443 357799999999999999999999999999999999
Q ss_pred CChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-HH---HHHHHHHHh--CCcEEEeccCCC------C
Q 028292 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS-KK---EGIDFAREY--GCLFLECSAKTR------V 162 (211)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~---~~~~~~~~~--~~~~~~~Sa~~~------~ 162 (211)
+++.+++.+.. |+..+.......++|+++|+||+|+....... .. ....++.+. .+.++++||++| .
T Consensus 77 s~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 77 SDDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CchhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 99999998887 44444333324689999999999996654211 11 111222222 246888999998 8
Q ss_pred CHHHHHHHHHH
Q 028292 163 NVEQCFEELVL 173 (211)
Q Consensus 163 ~v~~~~~~i~~ 173 (211)
|+.+.|+||..
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=6.2e-28 Score=170.71 Aligned_cols=152 Identities=28% Similarity=0.445 Sum_probs=115.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF-------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (211)
+|+|+|++|+|||||++++.+... ..+.++.+..+. .+.++ ...+.+||+||+..+..++..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 689999999999999999986422 233455554443 33333 5689999999999999999999999999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-------hCCcEEEeccCC
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE-------YGCLFLECSAKT 160 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~ 160 (211)
+++|+|+++++++.....++...+.... ..++|+++++||+|+... ....+...+... .+++++++||++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence 9999999999888888774555444322 468999999999998553 333444444332 245899999999
Q ss_pred CCCHHHHHHHHHH
Q 028292 161 RVNVEQCFEELVL 173 (211)
Q Consensus 161 ~~~v~~~~~~i~~ 173 (211)
|.|++++++||.+
T Consensus 154 g~gv~e~~~~l~~ 166 (167)
T cd04160 154 GTGVREGIEWLVE 166 (167)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999865
No 123
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=9.6e-28 Score=172.23 Aligned_cols=157 Identities=22% Similarity=0.305 Sum_probs=121.1
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+.++|+++|.+|||||||++++.+..+..+.++.+.+.. .+.+. .+.+.+||+||+..+...|..++.++|++|+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE--ELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 4569999999999999999999999877655566554332 33333 4678999999999888899999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------hCCcEEEecc
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE------------YGCLFLECSA 158 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 158 (211)
|+|++++.++......+...+.. ....++|+++|+||+|+.. .+..+++.+...- ....++++||
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~-~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSD-EELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 99999999888877744444432 2246799999999999853 3444554433311 1235899999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028292 159 KTRVNVEQCFEELVLK 174 (211)
Q Consensus 159 ~~~~~v~~~~~~i~~~ 174 (211)
+++.|++++++||.+.
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999865
No 124
>PTZ00099 rab6; Provisional
Probab=99.96 E-value=4.6e-27 Score=166.97 Aligned_cols=141 Identities=39% Similarity=0.631 Sum_probs=125.3
Q ss_pred CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCC
Q 028292 39 EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ 118 (211)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (211)
..+.++.|.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++++|+.+.. |+..+.... ..
T Consensus 7 ~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~-w~~~i~~~~-~~ 84 (176)
T PTZ00099 7 NNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDILNER-GK 84 (176)
T ss_pred CCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CC
Confidence 5678899999988888999999999999999999999999999999999999999999999999987 666555443 35
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHcCCCc
Q 028292 119 DCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181 (211)
Q Consensus 119 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~ 181 (211)
++|+++|+||+|+...+.+..+++..++..++..++++||++|.||+++|.+|.+.+.+....
T Consensus 85 ~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 85 DVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 789999999999977777888889899998999999999999999999999999999876544
No 125
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=1.5e-29 Score=171.79 Aligned_cols=175 Identities=27% Similarity=0.504 Sum_probs=160.8
Q ss_pred CccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 028292 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYY 82 (211)
Q Consensus 4 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 82 (211)
++.+...+..||++++|..++||||+|++++.+-| ..+..+.|.++....+.+..+.+++.+||++|+++++.+...++
T Consensus 11 am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyy 90 (246)
T KOG4252|consen 11 AMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYY 90 (246)
T ss_pred CCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHh
Confidence 45567778999999999999999999999999988 78889999999999999999999999999999999999999999
Q ss_pred cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC
Q 028292 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV 162 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (211)
+++.+.++||+.+|+.||+...+ |++.+.... ..+|.++|-||+|+.+...+...++..+++..++.++.+|++...
T Consensus 91 rgaqa~vLVFSTTDr~SFea~~~-w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~ 167 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRYSFEATLE-WYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDF 167 (246)
T ss_pred ccccceEEEEecccHHHHHHHHH-HHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhh
Confidence 99999999999999999999999 777776544 789999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCc
Q 028292 163 NVEQCFEELVLKILDTPSL 181 (211)
Q Consensus 163 ~v~~~~~~i~~~~~~~~~~ 181 (211)
||..+|.+|.+.+.+....
T Consensus 168 NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 168 NVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 9999999999998765443
No 126
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=7.4e-27 Score=176.67 Aligned_cols=144 Identities=28% Similarity=0.485 Sum_probs=121.4
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECC-------------eEEEEEEEeCCCcc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG-------------KKMKLAIWDTAGQE 72 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-------------~~~~~~i~D~~g~~ 72 (211)
..+....+||+|+|+.|||||||++++.++.+ ..+.++.|.++....+.+++ ..+.+.||||+|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 34566789999999999999999999999988 56778999888777776642 56889999999999
Q ss_pred cccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcC-----------CCCCcEEEEEeCCCCCCCc---c--
Q 028292 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-----------NQDCIKLLVGNKVDKESER---V-- 136 (211)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~~---~-- 136 (211)
.+..++..+++++|++|+|||+++..+|+.+.. |+..+..... ..++|++||+||+|+...+ .
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~k-Wl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s 173 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSS 173 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccc
Confidence 999999999999999999999999999999987 7777765531 1358999999999996543 2
Q ss_pred -cCHHHHHHHHHHhCC
Q 028292 137 -VSKKEGIDFAREYGC 151 (211)
Q Consensus 137 -~~~~~~~~~~~~~~~ 151 (211)
+..+++++++..+++
T Consensus 174 ~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 174 GNLVDAARQWVEKQGL 189 (334)
T ss_pred cccHHHHHHHHHHcCC
Confidence 357899999999875
No 127
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.95 E-value=1.7e-26 Score=164.29 Aligned_cols=153 Identities=22% Similarity=0.345 Sum_probs=118.2
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+.++|+++|++|||||||++++.+..+..+.++.|.... .+... ...+.+||+||+..+...+..+++++|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 4579999999999999999999999877666677774443 33334 3578999999998888888888999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC--------cEEEeccCCCC
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC--------LFLECSAKTRV 162 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~~~ 162 (211)
|+|+++..++.....++........ ..++|+++++||+|+..... .++. ....++ .++++||++|+
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~--~~~i---~~~l~~~~~~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATAAP--AEEI---AEALNLHDLRDRTWHIQACSAKTGE 161 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccCCC--HHHH---HHHcCCcccCCCeEEEEEeECCCCC
Confidence 9999999888877764555444322 46799999999999854322 2222 222222 47899999999
Q ss_pred CHHHHHHHHHH
Q 028292 163 NVEQCFEELVL 173 (211)
Q Consensus 163 ~v~~~~~~i~~ 173 (211)
|++++|+||.+
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.95 E-value=2.3e-26 Score=164.46 Aligned_cols=153 Identities=25% Similarity=0.304 Sum_probs=113.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC--C------CCCCC------cceeeeEEEEEEE-----CCeEEEEEEEeCCCccccc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT--F------EELSP------TIGVDFKIKHVAL-----GGKKMKLAIWDTAGQERFR 75 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~--~------~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~~~~ 75 (211)
+|+++|++++|||||+++|++.. + ..+.+ +.|.++....+.+ ++..+.++||||||+..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 79999999999999999999742 1 11212 2233444333332 5677889999999999998
Q ss_pred ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC---c
Q 028292 76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC---L 152 (211)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 152 (211)
..+..++..+|++|+|+|+++..+++.... |.... ..++|+++|+||+|+.+.. ..+...++...+++ .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~-~~~~~-----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 153 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLAN-FYLAL-----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSE 153 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHH-HHHHH-----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCccc
Confidence 888889999999999999999877666544 33222 2578999999999985432 12223445555565 4
Q ss_pred EEEeccCCCCCHHHHHHHHHHHH
Q 028292 153 FLECSAKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 153 ~~~~Sa~~~~~v~~~~~~i~~~~ 175 (211)
++++||++|.|+++++++|.+.+
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 154 AILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEEeeccCCCCHHHHHHHHHhhC
Confidence 89999999999999999998765
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=1.6e-26 Score=161.78 Aligned_cols=151 Identities=27% Similarity=0.444 Sum_probs=116.6
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~ 94 (211)
|+++|++|||||||++++.+..+ ..+.++.+..+. .+... .+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 78999999999999999999987 566666665443 23333 37899999999999999999999999999999999
Q ss_pred CChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCCHHHHHH
Q 028292 95 TRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
++..++.....++........ ..++|+++|+||+|+...... .+..... ....++++++|+++|.|++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 999888877774555444322 467899999999998654322 2222111 12336789999999999999999
Q ss_pred HHHH
Q 028292 170 ELVL 173 (211)
Q Consensus 170 ~i~~ 173 (211)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9875
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=9.2e-26 Score=159.72 Aligned_cols=155 Identities=17% Similarity=0.118 Sum_probs=105.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc---------cccccccCc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT---------LTSSYYRGA 85 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~~ 85 (211)
+|+++|.+|+|||||+++|++..+.. .+..+++.......+......+++|||||...... .........
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEV-APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCcc-CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 79999999999999999999987621 12222222222222233457899999999742110 000111236
Q ss_pred cEEEEEEECCChhcH--HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292 86 QGIIMVYDVTRRDTF--TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN 163 (211)
Q Consensus 86 d~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (211)
|++|+|+|+++..++ +.... |...+.... .+.|+++|+||+|+.....+.. ...+....+.+++++||++|.|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~-~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLS-LFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred CcEEEEEeCCcccccchHHHHH-HHHHHHhhc--CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccCC
Confidence 899999999987654 44444 555554332 4799999999999965544332 3445555567899999999999
Q ss_pred HHHHHHHHHHHH
Q 028292 164 VEQCFEELVLKI 175 (211)
Q Consensus 164 v~~~~~~i~~~~ 175 (211)
++++++++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 131
>PRK15494 era GTPase Era; Provisional
Probab=99.94 E-value=7.4e-26 Score=175.98 Aligned_cols=175 Identities=21% Similarity=0.248 Sum_probs=124.8
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccc-------cccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-FRTLT-------SSYY 82 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~-------~~~~ 82 (211)
.+.++|+++|.+|||||||+|+|++..+..+.+..+++.......+.....++.||||||... +..+. ...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 456799999999999999999999988755555555544333322222345789999999743 22211 1236
Q ss_pred cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--CcEEEeccCC
Q 028292 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG--CLFLECSAKT 160 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 160 (211)
.++|++++|+|..+. |......+...+.. .+.|.++|+||+|+... ...++.++....+ ..++++||++
T Consensus 130 ~~aDvil~VvD~~~s--~~~~~~~il~~l~~----~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLKS--FDDITHNILDKLRS----LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCCC--CCHHHHHHHHHHHh----cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccC
Confidence 789999999997653 44443335544442 35677889999998543 2345555555544 5799999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCcccCCCCCcccccc
Q 028292 161 RVNVEQCFEELVLKILDTPSLLSEGSSGVKKNIF 194 (211)
Q Consensus 161 ~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 194 (211)
|.|+++++++|.+.+.+..+.++++.....+..+
T Consensus 201 g~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~ 234 (339)
T PRK15494 201 GKNIDGLLEYITSKAKISPWLYAEDDITDLPMRF 234 (339)
T ss_pred ccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHH
Confidence 9999999999999999999999888766654443
No 132
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=7.3e-26 Score=171.54 Aligned_cols=170 Identities=18% Similarity=0.096 Sum_probs=121.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccCcc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT--------LTSSYYRGAQ 86 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d 86 (211)
+|+++|.+|||||||+|+|++.+.....+.++++.............++.||||||...... .....+.++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999988755555555544433222222335799999999643211 1234578999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHH
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVE 165 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 165 (211)
++++|+|+++..+++ ..+...+. ..+.|+++|+||+|+.+... .......+....+. +++++||++|.|++
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~----~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQ----NLKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHH----hcCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 999999999887664 22444443 35789999999999854322 22333344444454 79999999999999
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCcccc
Q 028292 166 QCFEELVLKILDTPSLLSEGSSGVKKN 192 (211)
Q Consensus 166 ~~~~~i~~~~~~~~~~~~~~~~~~~~~ 192 (211)
+++++|.+.+.+..+.++++.....+.
T Consensus 154 ~L~~~l~~~l~~~~~~~~~~~~t~~~~ 180 (270)
T TIGR00436 154 FLAAFIEVHLPEGPFRYPEDYVTDQPD 180 (270)
T ss_pred HHHHHHHHhCCCCCCCCCCcccCCCCH
Confidence 999999999999888888776655443
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=1.4e-25 Score=173.28 Aligned_cols=162 Identities=18% Similarity=0.148 Sum_probs=118.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEE--EEECCeEEEEEEEeCCCccc-------ccccccccccC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKH--VALGGKKMKLAIWDTAGQER-------FRTLTSSYYRG 84 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 84 (211)
-.|.++|.||||||||+++|++.+. ...+.++++..... +.+. ....+.+||+||..+ +...+..++..
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 3689999999999999999998764 23333333333333 3332 234689999999632 11223334567
Q ss_pred ccEEEEEEECCChhcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN 163 (211)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (211)
++++|+|+|+++.++++.... |...+..+.. ..++|+++|+||+|+.+...+..++...+....+.+++++||++++|
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~-~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~G 315 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKT-IRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEG 315 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHH-HHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence 999999999998888888776 7777766542 24799999999999976554444445555556678999999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 028292 164 VEQCFEELVLKILDT 178 (211)
Q Consensus 164 v~~~~~~i~~~~~~~ 178 (211)
+++++++|.+.+.+.
T Consensus 316 I~eL~~~L~~~l~~~ 330 (335)
T PRK12299 316 LDELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988653
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.94 E-value=5.1e-25 Score=153.89 Aligned_cols=158 Identities=28% Similarity=0.452 Sum_probs=124.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
.+||+++|.+|+|||||++++....+ ..+.++.+.+.....+..++..+.+.+||+||+..+...+...+.+++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999886 45556666666666677777778899999999999988888889999999999
Q ss_pred EECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292 92 YDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170 (211)
Q Consensus 92 ~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 170 (211)
+|.... .++......+...+.... ..+.|+++++||+|+.... ........+......+++++||+++.|+.+++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence 999887 677666633555555554 2389999999999996544 3333333444444568999999999999999998
Q ss_pred HH
Q 028292 171 LV 172 (211)
Q Consensus 171 i~ 172 (211)
|.
T Consensus 159 l~ 160 (161)
T TIGR00231 159 VE 160 (161)
T ss_pred hh
Confidence 74
No 135
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.7e-26 Score=156.87 Aligned_cols=166 Identities=20% Similarity=0.331 Sum_probs=136.4
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (211)
......++|+++|--++||||++++|..++.....||.|.......+ ..+.+++||..|+..++..|+.++++.++
T Consensus 12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~ 87 (181)
T KOG0070|consen 12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQG 87 (181)
T ss_pred ccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcE
Confidence 44567899999999999999999999999997778999966655555 37889999999999999999999999999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc---ccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER---VVSKKEGIDFAREYGCLFLECSAKTRVNV 164 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (211)
+|+|+|.+|++.+...++.+...+.. .+..+.|+++.+||.|++..- ++...............+..++|.+|+|+
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~-~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL 166 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAE-PELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGL 166 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcC-cccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccH
Confidence 99999999999999988855555543 336789999999999986543 23333333344445567899999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028292 165 EQCFEELVLKILDT 178 (211)
Q Consensus 165 ~~~~~~i~~~~~~~ 178 (211)
.+.++|+.+.+...
T Consensus 167 ~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 167 YEGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988654
No 136
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=9.1e-26 Score=160.01 Aligned_cols=156 Identities=19% Similarity=0.216 Sum_probs=108.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceee--eEEEEEEECCeEEEEEEEeCCCccc----cccccccc---ccCc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQER----FRTLTSSY---YRGA 85 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~ 85 (211)
+|+++|.+|||||||+++|.+... ......+++ .....+.+.+ ...+.+|||||... ...+...+ +..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 689999999999999999997654 111111222 2222233333 24789999999632 12222232 3469
Q ss_pred cEEEEEEECCCh-hcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-hCCcEEEeccCCCC
Q 028292 86 QGIIMVYDVTRR-DTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFARE-YGCLFLECSAKTRV 162 (211)
Q Consensus 86 d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~ 162 (211)
|++++|+|++++ .+++.+.. |.+.+..... ..++|+++|+||+|+.+.... .+....+... .+.+++++||+++.
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 157 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKT-IRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGE 157 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHH-HHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCC
Confidence 999999999999 78887766 6666654431 247899999999998665443 3334444455 36789999999999
Q ss_pred CHHHHHHHHHHH
Q 028292 163 NVEQCFEELVLK 174 (211)
Q Consensus 163 ~v~~~~~~i~~~ 174 (211)
|+++++++|.+.
T Consensus 158 gi~~l~~~i~~~ 169 (170)
T cd01898 158 GLDELLRKLAEL 169 (170)
T ss_pred CHHHHHHHHHhh
Confidence 999999999865
No 137
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.94 E-value=6.8e-25 Score=145.35 Aligned_cols=170 Identities=23% Similarity=0.320 Sum_probs=142.9
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC---CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-cccccccccCc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF---EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-RTLTSSYYRGA 85 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~ 85 (211)
+-+..||+|+|..++|||++++.++.+.. .+..+|....+....-+-.+..-++.|+||.|.... ..+.+.++.-+
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 34678999999999999999999997765 344445443333333333455567899999997776 56677788999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
|++++||+..+++||+.+.. +...+.....+..+|+++++||+|+.+++.+..+.+..|+....+..+++++++...+-
T Consensus 86 DafVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ 164 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLY 164 (198)
T ss_pred ceEEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence 99999999999999999887 88888888878899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 028292 166 QCFEELVLKILDTPS 180 (211)
Q Consensus 166 ~~~~~i~~~~~~~~~ 180 (211)
+.|..+...+...+.
T Consensus 165 epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 165 EPFTYLASRLHQPQS 179 (198)
T ss_pred hHHHHHHHhccCCcc
Confidence 999999988875543
No 138
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=2.9e-25 Score=162.05 Aligned_cols=156 Identities=21% Similarity=0.155 Sum_probs=110.8
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc---------cccccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF---------RTLTSS 80 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~ 80 (211)
+..++|+|+|++|||||||++++++..+ ....+....+.....+.+.+. ..+.+|||||.... ...+ .
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 4468999999999999999999999865 211122222233333444332 37899999996321 1111 1
Q ss_pred cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT 160 (211)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (211)
.+..+|++++|+|++++.++..... |...+.... ..++|+++|+||+|+.+..... ......+.+++++||++
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~~-~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIET-VEKVLKELG-AEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKT 189 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHH-HHHHHHHcC-cCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCC
Confidence 3568999999999999988877655 666665543 4579999999999985543321 33445567899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028292 161 RVNVEQCFEELVLKI 175 (211)
Q Consensus 161 ~~~v~~~~~~i~~~~ 175 (211)
+.|+++++++|.+.+
T Consensus 190 ~~gi~~l~~~L~~~~ 204 (204)
T cd01878 190 GEGLDELLEAIEELL 204 (204)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998753
No 139
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=2.9e-25 Score=152.95 Aligned_cols=134 Identities=19% Similarity=0.212 Sum_probs=99.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc-----cccccccccccCccEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE-----RFRTLTSSYYRGAQGII 89 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~d~~i 89 (211)
||+++|++|||||||++++.+..+ .+.++.+.+ +. -.+|||||.. .+..+.. .++++|++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-~~~~t~~~~-------~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-LYKKTQAVE-------YN-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-ccccceeEE-------Ec-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 899999999999999999998765 223332222 11 1689999972 2333333 478999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVEQCF 168 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~ 168 (211)
+|||++++.++... . |.... ..|+++|+||+|+.+ +....+++.+++...+. +++++||++|.|++++|
T Consensus 68 lv~d~~~~~s~~~~-~-~~~~~-------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 68 LVQSATDPESRFPP-G-FASIF-------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred EEecCCCCCcCCCh-h-HHHhc-------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence 99999999887552 2 33221 249999999999864 33455666777777776 89999999999999999
Q ss_pred HHHH
Q 028292 169 EELV 172 (211)
Q Consensus 169 ~~i~ 172 (211)
.++.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 9874
No 140
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.93 E-value=1.9e-24 Score=152.18 Aligned_cols=151 Identities=22% Similarity=0.177 Sum_probs=102.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
+.|+++|.+|||||||+++|++... .+..+....+.....+.+.. ...+.+|||||++.+......++.++|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 4689999999999999999997432 12222223233333344432 457999999999888776667788999999
Q ss_pred EEEECCCh---hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHH---hCCcEEEeccCCC
Q 028292 90 MVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VSKKEGIDFARE---YGCLFLECSAKTR 161 (211)
Q Consensus 90 lv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~ 161 (211)
+|+|+++. ++++.+ ..+.. ...+|+++++||+|+.+... ....+..+.... .+.+++++||+++
T Consensus 80 ~V~d~~~~~~~~~~~~~-----~~~~~---~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (164)
T cd04171 80 LVVAADEGIMPQTREHL-----EILEL---LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTG 151 (164)
T ss_pred EEEECCCCccHhHHHHH-----HHHHH---hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCC
Confidence 99999873 333221 12221 12248999999999865421 112333344443 3579999999999
Q ss_pred CCHHHHHHHHHH
Q 028292 162 VNVEQCFEELVL 173 (211)
Q Consensus 162 ~~v~~~~~~i~~ 173 (211)
.|++++++++..
T Consensus 152 ~~v~~l~~~l~~ 163 (164)
T cd04171 152 EGIEELKEYLDE 163 (164)
T ss_pred cCHHHHHHHHhh
Confidence 999999998754
No 141
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=5.8e-24 Score=156.82 Aligned_cols=169 Identities=41% Similarity=0.596 Sum_probs=136.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
.+||+++|+.|||||||+++|....+ ..+.++.+..+...........+.+.+|||+|+++++..+..++.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 49999999999999999999999999 55666777777666666665588899999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHh---CCcEEEe
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVSKKEGIDFAREY---GCLFLEC 156 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~ 156 (211)
||..+..++..+...|...+.... ..+.|+++++||+|+.... .............. ...++++
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELA-PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhC-CCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 999997777777776888887665 3579999999999996653 22333333332222 3348999
Q ss_pred ccC--CCCCHHHHHHHHHHHHHcCCCcc
Q 028292 157 SAK--TRVNVEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 157 Sa~--~~~~v~~~~~~i~~~~~~~~~~~ 182 (211)
|++ .+.++++++..++..+.+.....
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~~~ 191 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIEKL 191 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhhhh
Confidence 999 99999999999999997654333
No 142
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=5.8e-25 Score=160.10 Aligned_cols=156 Identities=22% Similarity=0.252 Sum_probs=104.7
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC-----------cccccccc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG-----------QERFRTLT 78 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~ 78 (211)
....++|+++|.+|||||||+++|.+..+. .....+.++....+.+. .+.+||||| ++.++..+
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 345689999999999999999999987762 33334555554444433 589999999 34444444
Q ss_pred cccc----cCccEEEEEEECCChhcHH-H--------HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 028292 79 SSYY----RGAQGIIMVYDVTRRDTFT-N--------LADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDF 145 (211)
Q Consensus 79 ~~~~----~~~d~~ilv~d~~~~~s~~-~--------~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 145 (211)
..++ ..++++++|+|.++...+. . ....+...+. ..++|+++|+||+|+.+.. .+...++
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~p~iiv~NK~Dl~~~~---~~~~~~~ 153 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR----ELGIPPIVAVNKMDKIKNR---DEVLDEI 153 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH----HcCCCeEEEEECccccCcH---HHHHHHH
Confidence 4444 3457888888886532210 0 0010122222 3579999999999985443 2344455
Q ss_pred HHHhCC---------cEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292 146 AREYGC---------LFLECSAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 146 ~~~~~~---------~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
...+++ +++++||++| |+++++++|.+.+.+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 555554 5899999999 9999999999987543
No 143
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.92 E-value=1.8e-25 Score=147.05 Aligned_cols=161 Identities=24% Similarity=0.401 Sum_probs=128.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
..+.+.++|..++|||||++.+..+.+ ....|+.|...+ .+....+.+.+||.||+..++.+|+.|++..+++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 457899999999999999999998877 666777775433 445577889999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc---ccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER---VVSKKEGIDFAREYGCLFLECSAKTRVNVEQC 167 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 167 (211)
|+|+.+++.+.-.+..+..++.... ..++|++|++||.|+.+.- .+..+..+....+..+.+|-+|+++..+++.+
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~-l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~ 173 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPS-LTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDIT 173 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchh-hcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHH
Confidence 9999999988877776666666555 7889999999999985542 11122222222334456899999999999999
Q ss_pred HHHHHHHHHc
Q 028292 168 FEELVLKILD 177 (211)
Q Consensus 168 ~~~i~~~~~~ 177 (211)
.+||+++...
T Consensus 174 ~~Wli~hsk~ 183 (186)
T KOG0075|consen 174 LDWLIEHSKS 183 (186)
T ss_pred HHHHHHHhhh
Confidence 9999987653
No 144
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=1.1e-23 Score=145.90 Aligned_cols=154 Identities=49% Similarity=0.735 Sum_probs=120.7
Q ss_pred EEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC
Q 028292 18 LIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR 96 (211)
Q Consensus 18 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~ 96 (211)
|+|++|+|||||++++.+... .........+..............+.+||+||...+...+...++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999998876 3333333366777777777778899999999988888777888899999999999999
Q ss_pred hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 97 RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKE-GIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
+.++.....++....... ...++|+++++||+|+.......... ..........+++++|+.++.|+++++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~-~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 81 RESFENVKEWLLLILINK-EGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHHHHHHHHhh-ccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 998888777422333322 36789999999999986655443332 3344555678999999999999999999985
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=8.5e-24 Score=148.08 Aligned_cols=147 Identities=18% Similarity=0.224 Sum_probs=107.6
Q ss_pred EEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--cCccEE
Q 028292 18 LIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT------LTSSYY--RGAQGI 88 (211)
Q Consensus 18 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~~d~~ 88 (211)
|+|.+|+|||||++++.+... ....+..+.+.....+.+++ ..+.+|||||...+.. ++..++ .++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998764 33334444444445555554 4789999999876554 244455 489999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
|+|+|.++++.... +...+. ..++|+++|+||+|+.+...+... ...+...++++++++||.++.|+++++
T Consensus 79 i~v~d~~~~~~~~~----~~~~~~----~~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 79 VNVVDATNLERNLY----LTLQLL----ELGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EEEeeCCcchhHHH----HHHHHH----HcCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHH
Confidence 99999998654322 222222 247899999999999665544333 456667778999999999999999999
Q ss_pred HHHHHHH
Q 028292 169 EELVLKI 175 (211)
Q Consensus 169 ~~i~~~~ 175 (211)
+++.+.+
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9998864
No 146
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.92 E-value=3e-24 Score=142.66 Aligned_cols=174 Identities=25% Similarity=0.496 Sum_probs=150.5
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
..-.++|.++|++..|||||+-.+.++.+ .++..+.|..+..+.+.+.+..+.+.+||..|++++..+.+.....+-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 34578999999999999999999999988 67778889999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC-----CCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE-----SERVVSKKEGIDFAREYGCLFLECSAKTRVN 163 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (211)
+++||++.+.++.++.. |++..+... +.-+| |+|++|.|.- +.......+++.+++..+++.|.+|+..+.|
T Consensus 97 lFmFDLt~r~TLnSi~~-WY~QAr~~N-ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKE-WYRQARGLN-KTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEecCchHHHHHHHH-HHHHHhccC-Cccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 99999999999999999 666665443 45566 5679999962 1222335577889999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcccCCC
Q 028292 164 VEQCFEELVLKILDTPSLLSEGS 186 (211)
Q Consensus 164 v~~~~~~i~~~~~~~~~~~~~~~ 186 (211)
|+.+|..++..++.-.+..++..
T Consensus 174 v~KIFK~vlAklFnL~~ti~~~~ 196 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFNLPWTIPEIL 196 (205)
T ss_pred HHHHHHHHHHHHhCCceeccccc
Confidence 99999999999999988876644
No 147
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=1.2e-23 Score=148.81 Aligned_cols=156 Identities=19% Similarity=0.130 Sum_probs=107.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCC-CCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL-SPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
.|+++|.+|+|||||+++|....+... .+....+.....+... .....+.+|||||+..+..++...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 489999999999999999998877322 2222222222333332 13567999999999888888888889999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH-HHHHHHH------HhCCcEEEeccCCCCCHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKK-EGIDFAR------EYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~~------~~~~~~~~~Sa~~~~~v~ 165 (211)
|+++....+... ....+. ..++|+++|+||+|+......... ....+.. ..+.+++++|+++|.|++
T Consensus 82 d~~~~~~~~~~~--~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQTIE--AIKLAK----AANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHHHHH--HHHHHH----HcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 999854322221 112222 357899999999998643211111 1111111 123589999999999999
Q ss_pred HHHHHHHHHHH
Q 028292 166 QCFEELVLKIL 176 (211)
Q Consensus 166 ~~~~~i~~~~~ 176 (211)
+++++|.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999988754
No 148
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=8.8e-24 Score=147.69 Aligned_cols=145 Identities=22% Similarity=0.234 Sum_probs=106.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceee--eEEEEEEECCeEEEEEEEeCCCccccccc--------cccccc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSYYR 83 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~ 83 (211)
++|+++|++|+|||||++++++.......+..+++ .....+... ...+.+|||||...+... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987753323333333 333333333 457899999997554321 224567
Q ss_pred CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN 163 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (211)
.+|++++|+|++++.+...... +.. ..++|+++|+||+|+.+.... .....+.+++++||+++.|
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~-~~~-------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEI-LEL-------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHH-HHh-------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCC
Confidence 8999999999999877766543 221 367999999999998655433 3344567899999999999
Q ss_pred HHHHHHHHHHHH
Q 028292 164 VEQCFEELVLKI 175 (211)
Q Consensus 164 v~~~~~~i~~~~ 175 (211)
+++++.+|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 149
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=4e-25 Score=151.82 Aligned_cols=148 Identities=18% Similarity=0.252 Sum_probs=101.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc------ccccccc--cCc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR------TLTSSYY--RGA 85 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~--~~~ 85 (211)
|+|+++|.||||||||+|+|++.+. .....+|.+.......+......+.++|+||--.+. .....++ .+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 6899999999999999999999885 445556665555544433223678899999943222 2223333 688
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
|++|.|+|+++.+ .-.. +...+. ..++|+++++||+|....+.+.. +...+.+..+++++++||++++|++
T Consensus 80 D~ii~VvDa~~l~---r~l~-l~~ql~----e~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 80 DLIIVVVDATNLE---RNLY-LTLQLL----ELGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGID 150 (156)
T ss_dssp SEEEEEEEGGGHH---HHHH-HHHHHH----HTTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred CEEEEECCCCCHH---HHHH-HHHHHH----HcCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHH
Confidence 9999999998753 2222 222222 46799999999999865554433 3556777889999999999999999
Q ss_pred HHHHHH
Q 028292 166 QCFEEL 171 (211)
Q Consensus 166 ~~~~~i 171 (211)
++++.|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 998865
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=1.3e-23 Score=168.11 Aligned_cols=153 Identities=24% Similarity=0.219 Sum_probs=113.1
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCccccccc--------ccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQERFRTL--------TSS 80 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 80 (211)
...++|+++|++|||||||+|+|++.......+.++++.. ...+.+++ ..+.+|||||....... ...
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 4568999999999999999999998765444444555444 34444544 56789999997654322 235
Q ss_pred cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT 160 (211)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (211)
+++++|++++|+|++++.+++.. |...+. ..++|+++|+||+|+... +...+...++.+++++||++
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~---~l~~~~----~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF---LIIDLN----KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ 345 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH---HHHHHh----hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec
Confidence 67899999999999998887664 333332 357899999999998543 12334556678899999998
Q ss_pred CCCHHHHHHHHHHHHHcCC
Q 028292 161 RVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 161 ~~~v~~~~~~i~~~~~~~~ 179 (211)
.|++++++.+.+.+.+..
T Consensus 346 -~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 346 -LKIKALVDLLTQKINAFY 363 (442)
T ss_pred -CCHHHHHHHHHHHHHHHh
Confidence 699999999999887643
No 151
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=7.9e-24 Score=153.23 Aligned_cols=158 Identities=23% Similarity=0.238 Sum_probs=110.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh--CCCCCC-------------CCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS--DTFEEL-------------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT 78 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (211)
-+|+++|.+++|||||+++|++ +.+... ..+.|.++......+......+.+|||||+..+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 444221 1234555655556666667889999999999999999
Q ss_pred cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHH-------hC
Q 028292 79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VSKKEGIDFARE-------YG 150 (211)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~-------~~ 150 (211)
..+++++|++++|+|+++.. +..... +..... ..++|+++|+||+|+..... ...+++.++... .+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~-~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRF-VLKKAL----ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLD 156 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHH-HHHHHH----HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCc
Confidence 99999999999999998742 222222 222222 35789999999999864332 123344444422 36
Q ss_pred CcEEEeccCCCCCHHHH------HHHHHHHHHc
Q 028292 151 CLFLECSAKTRVNVEQC------FEELVLKILD 177 (211)
Q Consensus 151 ~~~~~~Sa~~~~~v~~~------~~~i~~~~~~ 177 (211)
++++++||++|.|+.++ +.+|++.+.+
T Consensus 157 ~~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~ 189 (194)
T cd01891 157 FPVLYASAKNGWASLNLEDPSEDLEPLFDTIIE 189 (194)
T ss_pred cCEEEeehhccccccccccchhhHHHHHHHHHh
Confidence 78999999999877443 4445554443
No 152
>PRK00089 era GTPase Era; Reviewed
Probab=99.91 E-value=1.4e-23 Score=161.07 Aligned_cols=173 Identities=16% Similarity=0.136 Sum_probs=120.9
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc--------cccccccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR--------TLTSSYYR 83 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~~ 83 (211)
+.-.|+|+|.+|||||||+|+|++.+.....+.+.++.............++.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4567999999999999999999998875555555444443333333334789999999964432 22334567
Q ss_pred CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CcEEEeccCCCC
Q 028292 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG-CLFLECSAKTRV 162 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 162 (211)
.+|++++|+|+++.... ....+...+. ..+.|+++|+||+|+.............+....+ ..++++||+++.
T Consensus 84 ~~D~il~vvd~~~~~~~--~~~~i~~~l~----~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 84 DVDLVLFVVDADEKIGP--GDEFILEKLK----KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred cCCEEEEEEeCCCCCCh--hHHHHHHHHh----hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 89999999999984221 1121333333 3468999999999996433333334444544444 579999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcccCCCCCcc
Q 028292 163 NVEQCFEELVLKILDTPSLLSEGSSGVK 190 (211)
Q Consensus 163 ~v~~~~~~i~~~~~~~~~~~~~~~~~~~ 190 (211)
|+++++++|.+.+.+..+.++++.....
T Consensus 158 gv~~L~~~L~~~l~~~~~~y~~~~~td~ 185 (292)
T PRK00089 158 NVDELLDVIAKYLPEGPPYYPEDQITDR 185 (292)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 9999999999999988887777654443
No 153
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.91 E-value=2.5e-23 Score=162.15 Aligned_cols=153 Identities=24% Similarity=0.209 Sum_probs=107.5
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc---------cccccccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER---------FRTLTSSY 81 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~ 81 (211)
..++|+++|.+|+|||||+|+|++... ....+....+.....+.+.+ ...+.||||+|..+ +...+ ..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 458999999999999999999998765 11222222334444555533 24789999999621 22222 23
Q ss_pred ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR 161 (211)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (211)
+.++|++++|+|++++.+++.... |...+.... ..++|+++|+||+|+.+...+ ... .....+++++||++|
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l~-~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg 337 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEA-VEKVLEELG-AEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTG 337 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHH-HHHHHHHhc-cCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCC
Confidence 678999999999999988777655 555555443 457899999999998543221 111 122346899999999
Q ss_pred CCHHHHHHHHHHH
Q 028292 162 VNVEQCFEELVLK 174 (211)
Q Consensus 162 ~~v~~~~~~i~~~ 174 (211)
.|+++++++|.+.
T Consensus 338 ~GI~eL~~~I~~~ 350 (351)
T TIGR03156 338 EGLDLLLEAIAER 350 (351)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
No 154
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.91 E-value=1.3e-23 Score=140.45 Aligned_cols=114 Identities=30% Similarity=0.613 Sum_probs=91.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCC---CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFE---ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
||+|+|++|||||||+++|++.... ...+..+.++......+......+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998874 3444555566666777788887899999999988888888889999999999
Q ss_pred EECCChhcHHHHHHH--HHHHHHhhcCCCCCcEEEEEeCCC
Q 028292 92 YDVTRRDTFTNLADI--WAKEIDLYSTNQDCIKLLVGNKVD 130 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~~~p~ivv~nK~D 130 (211)
||++++.+|+.+..+ |+..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999998663 34444433 46699999999998
No 155
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=3.9e-23 Score=159.69 Aligned_cols=159 Identities=18% Similarity=0.140 Sum_probs=110.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc----ccc---cccccCc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR----TLT---SSYYRGA 85 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~---~~~~~~~ 85 (211)
..|+++|.+|||||||+++|++... ....+.+........+.+.+ ...+.|||+||..+.. .+. ...+..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4799999999999999999998764 11112222222333333332 3578999999964221 222 2334579
Q ss_pred cEEEEEEECCCh---hcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292 86 QGIIMVYDVTRR---DTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR 161 (211)
Q Consensus 86 d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (211)
+++|+|+|+++. ++++.+.. |.+.+..+.. ..++|+++|+||+|+.+... ..+....+....+.+++++||+++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~-l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEI-IRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHH-HHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 999999999976 56666655 6666655431 35789999999999965533 233444555666789999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028292 162 VNVEQCFEELVLKI 175 (211)
Q Consensus 162 ~~v~~~~~~i~~~~ 175 (211)
+|+++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998764
No 156
>COG1159 Era GTPase [General function prediction only]
Probab=99.91 E-value=1.2e-23 Score=155.33 Aligned_cols=178 Identities=19% Similarity=0.141 Sum_probs=136.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc--------ccccccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR--------TLTSSYY 82 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~~ 82 (211)
.+.--|+++|.||||||||+|++++.+....++-..+|.......+.....++.|+||||..... ......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 35567999999999999999999999998888888888888887777778899999999944332 2334457
Q ss_pred cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCC
Q 028292 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTR 161 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 161 (211)
..+|++++|+|+.+...-. .....+.+. ..+.|+++++||.|..............+.....+ .++++||++|
T Consensus 84 ~dvDlilfvvd~~~~~~~~--d~~il~~lk----~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 84 KDVDLILFVVDADEGWGPG--DEFILEQLK----KTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred ccCcEEEEEEeccccCCcc--HHHHHHHHh----hcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 8899999999999853221 121333333 35689999999999866554222333333333333 7999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcccCCCCCcccccc
Q 028292 162 VNVEQCFEELVLKILDTPSLLSEGSSGVKKNIF 194 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 194 (211)
.|++.+.+.+...+.+..+.++++.-...+..|
T Consensus 158 ~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf 190 (298)
T COG1159 158 DNVDTLLEIIKEYLPEGPWYYPEDQITDRPERF 190 (298)
T ss_pred CCHHHHHHHHHHhCCCCCCcCChhhccCChHHH
Confidence 999999999999999999999998877766554
No 157
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.4e-23 Score=170.30 Aligned_cols=164 Identities=21% Similarity=0.175 Sum_probs=113.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQER----------FRTLT 78 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~ 78 (211)
...++|+++|.+|||||||+++|++.......+..+++.. ...+.+++. .+.+|||||... +....
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHH
Confidence 3579999999999999999999998876444444444433 344455554 467999999532 22221
Q ss_pred -cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHH-HHHHhCCcEE
Q 028292 79 -SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--SKKEGID-FAREYGCLFL 154 (211)
Q Consensus 79 -~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~ 154 (211)
..+++.+|++|+|+|++++.++.+.. +...+. ..++|+++|+||+|+.+.... ...+..+ +.....++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~----~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 360 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR--VLSMVI----EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRV 360 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEE
Confidence 23568999999999999998887764 233332 367999999999999643211 1111211 1122336899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028292 155 ECSAKTRVNVEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 155 ~~Sa~~~~~v~~~~~~i~~~~~~~~~~~ 182 (211)
++||++|.|++++|..+.+.+.......
T Consensus 361 ~~SAk~g~gv~~lf~~i~~~~~~~~~~i 388 (472)
T PRK03003 361 NISAKTGRAVDKLVPALETALESWDTRI 388 (472)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999886555443
No 158
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.91 E-value=8e-24 Score=150.77 Aligned_cols=154 Identities=23% Similarity=0.243 Sum_probs=104.1
Q ss_pred EEcCCCCcHHHHHHHHhhCCCCCCCCccee--eeEEEEEEECCeEEEEEEEeCCCccc----ccccc---cccccCccEE
Q 028292 18 LIGDSGVGKSTLLLSFTSDTFEELSPTIGV--DFKIKHVALGGKKMKLAIWDTAGQER----FRTLT---SSYYRGAQGI 88 (211)
Q Consensus 18 v~G~~~~GKstli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~d~~ 88 (211)
++|++|||||||+++|.+... ......++ +.....+.+.+ ...+.+|||||... ...++ ...+..+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999998864 11111222 22222233331 45689999999632 12222 2346789999
Q ss_pred EEEEECCCh------hcHHHHHHHHHHHHHhhcCC------CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEe
Q 028292 89 IMVYDVTRR------DTFTNLADIWAKEIDLYSTN------QDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLEC 156 (211)
Q Consensus 89 ilv~d~~~~------~s~~~~~~~~~~~~~~~~~~------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
++|+|++++ .+++.... |...+...... .++|+++|+||+|+..................+..++++
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence 999999988 46766665 44445433311 479999999999996655433332333444456789999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 028292 157 SAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 157 Sa~~~~~v~~~~~~i~~~ 174 (211)
||+++.|++++++++.+.
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998764
No 159
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=1.4e-23 Score=146.69 Aligned_cols=145 Identities=23% Similarity=0.166 Sum_probs=100.7
Q ss_pred EEEcCCCCcHHHHHHHHhhCCCCCCCCcceee--eEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccCcc
Q 028292 17 LLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQERFRT--------LTSSYYRGAQ 86 (211)
Q Consensus 17 ~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~d 86 (211)
+++|.+|+|||||+++|++..........+++ ......... ...+.+|||||...+.. .+...+.++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47899999999999999987642222222322 333333333 36789999999776443 3345678899
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHH
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVE 165 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 165 (211)
++++|+|..++.+.... . +...+. ..+.|+++|+||+|+.+.... .......+. .++++|++++.|++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~-~~~~~~----~~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~ 147 (157)
T cd01894 79 VILFVVDGREGLTPADE-E-IAKYLR----KSKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIG 147 (157)
T ss_pred EEEEEEeccccCCccHH-H-HHHHHH----hcCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHH
Confidence 99999999876554432 1 333333 245999999999998654332 223334555 78999999999999
Q ss_pred HHHHHHHHH
Q 028292 166 QCFEELVLK 174 (211)
Q Consensus 166 ~~~~~i~~~ 174 (211)
+++++|.+.
T Consensus 148 ~l~~~l~~~ 156 (157)
T cd01894 148 DLLDAILEL 156 (157)
T ss_pred HHHHHHHhh
Confidence 999999875
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.91 E-value=1.5e-23 Score=168.61 Aligned_cols=148 Identities=23% Similarity=0.234 Sum_probs=110.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQERFRTL--------TSSY 81 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 81 (211)
..++|+++|.+|+|||||+|+|++.......+..+++.. ...+.+++ ..+.+|||||...+... ....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 458999999999999999999998775334444444443 33444444 56899999997654322 2235
Q ss_pred ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR 161 (211)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (211)
+.++|++++|+|++++.+++.... |.. ..++|+++|+||+|+.+..... ...+.+++++||++|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~-l~~-------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg 355 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEI-LEE-------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTG 355 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHH-HHh-------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCC
Confidence 788999999999999988775432 322 3578999999999996543321 334568999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 028292 162 VNVEQCFEELVLKILD 177 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~~ 177 (211)
.|+++++++|.+.+..
T Consensus 356 ~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 356 EGIDELREAIKELAFG 371 (449)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998865
No 161
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=1.9e-23 Score=169.52 Aligned_cols=155 Identities=21% Similarity=0.180 Sum_probs=110.9
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSSYYR 83 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 83 (211)
...+|+|+|.+|||||||+|+|++.......+..|.+.......+......+.+|||||... +...+..+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 45789999999999999999999877655556666555444443332334688999999652 2333455688
Q ss_pred CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCC
Q 028292 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRV 162 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (211)
++|++|+|+|+++..++... . +...+. ..++|+++|+||+|+.... .+....+ ..++ .++++||++|.
T Consensus 117 ~aD~il~VvD~~~~~s~~~~-~-i~~~l~----~~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 117 TADAVLFVVDATVGATATDE-A-VARVLR----RSGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR 185 (472)
T ss_pred hCCEEEEEEECCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence 99999999999998766432 2 444443 3579999999999985422 1122222 2343 45789999999
Q ss_pred CHHHHHHHHHHHHHc
Q 028292 163 NVEQCFEELVLKILD 177 (211)
Q Consensus 163 ~v~~~~~~i~~~~~~ 177 (211)
|+++++++|.+.+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999998865
No 162
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=8.8e-23 Score=164.59 Aligned_cols=164 Identities=23% Similarity=0.147 Sum_probs=113.5
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT----------- 78 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------- 78 (211)
....++|+++|.+|+|||||+++|++.......+..+++.......+......+.+|||||........
T Consensus 169 ~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 169 EDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 346799999999999999999999987754444555555444433332223468999999965443221
Q ss_pred cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-HH----hCCcE
Q 028292 79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-RE----YGCLF 153 (211)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~ 153 (211)
...++.+|++|+|+|++++.+..+.. +...+. ..++|+++|+||+|+... ....++..... .. ..+++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~v 321 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR--IAGLIL----EAGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPI 321 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH--HHHHHH----HcCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCce
Confidence 23578899999999999987766543 233332 357999999999998621 11122222222 11 24689
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHcCCC
Q 028292 154 LECSAKTRVNVEQCFEELVLKILDTPS 180 (211)
Q Consensus 154 ~~~Sa~~~~~v~~~~~~i~~~~~~~~~ 180 (211)
+++||++|.|++++|+++.+.+.....
T Consensus 322 i~~SA~~g~~v~~l~~~i~~~~~~~~~ 348 (429)
T TIGR03594 322 VFISALTGQGVDKLLDAIDEVYENANR 348 (429)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 999999999999999999988765543
No 163
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=2.6e-23 Score=135.89 Aligned_cols=159 Identities=25% Similarity=0.383 Sum_probs=130.3
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+.++|+.+|..++||||++..|.-+......|++|..+..+.+ ..+.+++||.+|+...+..|+.++....++|+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 45799999999999999999999988888888998855554444 55779999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~ 165 (211)
|+|..+....+..+..+...+.... -.+.|++|.+||.|++... ...++..+. +....-+.+++|.+|.|+.
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~e-m~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDRE-MRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHh-hhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHH
Confidence 9999999888888886666665443 6789999999999996654 334443333 3334568999999999999
Q ss_pred HHHHHHHHHHH
Q 028292 166 QCFEELVLKIL 176 (211)
Q Consensus 166 ~~~~~i~~~~~ 176 (211)
+-+.|+.+.+.
T Consensus 168 eglswlsnn~~ 178 (180)
T KOG0071|consen 168 EGLSWLSNNLK 178 (180)
T ss_pred HHHHHHHhhcc
Confidence 99999988764
No 164
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=1.9e-22 Score=143.10 Aligned_cols=154 Identities=24% Similarity=0.192 Sum_probs=103.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEE--EEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKI--KHVALGGKKMKLAIWDTAGQERFRT-----------LTS 79 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 79 (211)
+++|+++|++|+|||||++++++..........+++... ..+..++ ..+.+|||||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 589999999999999999999987652222233332222 3333444 3578999999643311 112
Q ss_pred ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-HHHHh----CCcEE
Q 028292 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID-FAREY----GCLFL 154 (211)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~ 154 (211)
..+.++|++++|+|++++.+..... +..... ..+.|+++++||+|+........+.... ..... ..+++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR--IAGLIL----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIV 153 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH--HHHHHH----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceE
Confidence 2457899999999999987765432 222222 3568999999999986553222222222 22222 36899
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 028292 155 ECSAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 155 ~~Sa~~~~~v~~~~~~i~~~ 174 (211)
++||+++.|++++++++.+.
T Consensus 154 ~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 154 FISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEeccCCCCHHHHHHHHHHh
Confidence 99999999999999998764
No 165
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2.7e-22 Score=158.85 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=113.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCccc----ccccccc---cccCcc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQER----FRTLTSS---YYRGAQ 86 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~----~~~~~~~---~~~~~d 86 (211)
.|+++|.||||||||+++|++.+. .....++++.......+... ...+.+||+||... ...+... .+..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 899999999999999999998764 22233333333332222212 35689999999532 1122233 345689
Q ss_pred EEEEEEECCCh---hcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC
Q 028292 87 GIIMVYDVTRR---DTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV 162 (211)
Q Consensus 87 ~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (211)
++|+|+|+++. +++++... |...+..+.. ..++|++||+||+|+... .+....+....+.+++++||++++
T Consensus 239 llI~VID~s~~~~~dp~e~~~~-i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEK-INKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred EEEEEEeCCccccCChHHHHHH-HHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence 99999999865 56666655 6666666542 257999999999998432 234455566666889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCc
Q 028292 163 NVEQCFEELVLKILDTPSL 181 (211)
Q Consensus 163 ~v~~~~~~i~~~~~~~~~~ 181 (211)
|+++++++|.+.+.+.+..
T Consensus 314 GI~eL~~~L~~~l~~~~~~ 332 (424)
T PRK12297 314 GLDELLYAVAELLEETPEF 332 (424)
T ss_pred CHHHHHHHHHHHHHhCccc
Confidence 9999999999998776543
No 166
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.3e-22 Score=159.76 Aligned_cols=174 Identities=17% Similarity=0.135 Sum_probs=120.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCccccc-------ccccccccCcc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQERFR-------TLTSSYYRGAQ 86 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~-------~~~~~~~~~~d 86 (211)
.|.++|.||||||||+|+|++.+. ...+.+++|.......+... ...+.|+||||...-. ......+..+|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 799999999999999999998764 44444555544444333222 2358999999964311 11123467899
Q ss_pred EEEEEEECC---ChhcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--CcEEEeccCC
Q 028292 87 GIIMVYDVT---RRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG--CLFLECSAKT 160 (211)
Q Consensus 87 ~~ilv~d~~---~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 160 (211)
++++|+|++ +.+.++.... |...+..+.. ..++|+++|+||+|+.....+ .+...++....+ .+++.+||++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~-l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARI-IINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred EEEEEeccCcccccChHHHHHH-HHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence 999999998 4455665554 5555554421 246899999999998654332 233334444444 4789999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCcccCCCCCccc
Q 028292 161 RVNVEQCFEELVLKILDTPSLLSEGSSGVKK 191 (211)
Q Consensus 161 ~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~ 191 (211)
+.|+++++++|.+.+.+.+..++++.....+
T Consensus 318 g~GIdeLl~~I~~~L~~~~~~~~~~~~td~~ 348 (390)
T PRK12298 318 GLGVKELCWDLMTFIEENPREEAEEAEAPEK 348 (390)
T ss_pred CcCHHHHHHHHHHHhhhCcccCCcccccCcc
Confidence 9999999999999999887777766554433
No 167
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.90 E-value=2.2e-22 Score=145.93 Aligned_cols=162 Identities=19% Similarity=0.169 Sum_probs=112.0
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc----------ccc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE----------RFR 75 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~ 75 (211)
+......++|+++|.+|+|||||++++++..+ ..+.++.+.+........ ...+.||||||.. .+.
T Consensus 18 ~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 18 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHH
Confidence 45566789999999999999999999999864 566667776555444333 2579999999942 222
Q ss_pred cccccccc---CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHhC
Q 028292 76 TLTSSYYR---GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS--KKEGIDFAREYG 150 (211)
Q Consensus 76 ~~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~ 150 (211)
.....++. ..+++++++|.+++.+..... +...+. ..++|+++++||+|+.+..... .+++........
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--i~~~l~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~ 168 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDLQ--MIEWLK----EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGD 168 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHHHH--HHHHHH----HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcC
Confidence 33333444 346788899988765443311 222332 3578999999999986543221 222334444446
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 151 CLFLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 151 ~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
.+++++||+++.|++++++.|.+.+.+
T Consensus 169 ~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 169 DEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 799999999999999999999887764
No 168
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.90 E-value=3.4e-22 Score=165.19 Aligned_cols=157 Identities=24% Similarity=0.282 Sum_probs=117.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCC-------C-CCCCC------cceeeeEEEEEEE-----CCeEEEEEEEeCCCccc
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDT-------F-EELSP------TIGVDFKIKHVAL-----GGKKMKLAIWDTAGQER 73 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~-------~-~~~~~------~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~~~ 73 (211)
.-||+++|+.++|||||+++|+... + ..+.+ ..|.++....+.+ ++..+.++||||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4589999999999999999998752 1 11212 2355555444333 46678999999999999
Q ss_pred ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC--
Q 028292 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-- 151 (211)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 151 (211)
+...+..++..+|++|+|+|+++..+++.... |.... ..++|+++|+||+|+..... .+...++...+++
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~-----~~~ipiIiViNKiDl~~~~~--~~~~~el~~~lg~~~ 154 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLAL-----ENDLEIIPVINKIDLPSADP--ERVKKEIEEVIGLDA 154 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHH-----HcCCCEEEEEECcCCCccCH--HHHHHHHHHHhCCCc
Confidence 99889999999999999999999877766555 43333 24689999999999854321 2223344455565
Q ss_pred -cEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 152 -LFLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 152 -~~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
.++++||++|.|+++++++|.+.+..
T Consensus 155 ~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 155 SEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred ceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 48999999999999999999987754
No 169
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=1.7e-22 Score=161.88 Aligned_cols=166 Identities=15% Similarity=0.128 Sum_probs=111.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc----c---ccccccccCc
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF----R---TLTSSYYRGA 85 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~---~~~~~~~~~~ 85 (211)
...|+|+|.||||||||+++|++.+. .....++++.......+......++|||+||.... . ......+..+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 35899999999999999999998765 22333444444333333323357999999995321 1 1122245778
Q ss_pred cEEEEEEECCCh----hcHHHHHHHHHHHHHhhc----------CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC
Q 028292 86 QGIIMVYDVTRR----DTFTNLADIWAKEIDLYS----------TNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC 151 (211)
Q Consensus 86 d~~ilv~d~~~~----~s~~~~~~~~~~~~~~~~----------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 151 (211)
|++|+|+|+++. ..+.++.. +...+..+. ...++|++||+||+|+.+.... .+.........++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~-i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~ 315 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDA-LEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW 315 (500)
T ss_pred CEEEEEECCcccccccCchhhHHH-HHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence 999999999853 34444333 444444332 1357899999999998654332 2222333445578
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHHcCCCc
Q 028292 152 LFLECSAKTRVNVEQCFEELVLKILDTPSL 181 (211)
Q Consensus 152 ~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~ 181 (211)
+++++||++++|+++++.+|.+.+...+..
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r~~ 345 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEARAA 345 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999998776543
No 170
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=2.1e-22 Score=145.05 Aligned_cols=155 Identities=19% Similarity=0.146 Sum_probs=109.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCc---------------ceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPT---------------IGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS 79 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (211)
+|+|+|.+|+|||||+++|++......... .+.+.......+......+.+|||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 589999999999999999998776322211 11222222222333356799999999988888888
Q ss_pred ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHH---------
Q 028292 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--SKKEGIDFARE--------- 148 (211)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~--------- 148 (211)
.+++.+|++++|+|++++.+..... +..... ..+.|+++++||+|+...... ...++.+....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~----~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTRE--HLRIAR----EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHH--HHHHHH----HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8899999999999998876543322 222222 367999999999998652221 12233333332
Q ss_pred -----hCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292 149 -----YGCLFLECSAKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 149 -----~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 175 (211)
...+++++||++|.|+++++.+|.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 356899999999999999999999886
No 171
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=3e-22 Score=141.13 Aligned_cols=156 Identities=18% Similarity=0.121 Sum_probs=105.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------cccccccC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT--------LTSSYYRG 84 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~ 84 (211)
..+|+++|.+|+|||||++++++.......+....+..............+.+|||||...... .....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999876633333222222222223333456789999999654322 23345788
Q ss_pred ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CcEEEeccCCCCC
Q 028292 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG-CLFLECSAKTRVN 163 (211)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 163 (211)
+|++++|+|++++.+. ....+...+. ..+.|+++|+||+|+........+....+....+ .+++++|++++.|
T Consensus 83 ~d~i~~v~d~~~~~~~--~~~~~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 83 VDLVLFVVDASEPIGE--GDEFILELLK----KSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred CCEEEEEEECCCccCc--hHHHHHHHHH----HhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 9999999999987221 1121333333 2368999999999986433333333444444443 6899999999999
Q ss_pred HHHHHHHHHHH
Q 028292 164 VEQCFEELVLK 174 (211)
Q Consensus 164 v~~~~~~i~~~ 174 (211)
+++++++|.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999999765
No 172
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=2.2e-22 Score=145.47 Aligned_cols=158 Identities=15% Similarity=0.081 Sum_probs=102.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC----CC----CC--CCCcceeeeEEEEEE----------ECCeEEEEEEEeCCCccc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD----TF----EE--LSPTIGVDFKIKHVA----------LGGKKMKLAIWDTAGQER 73 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~----~~----~~--~~~~~~~~~~~~~~~----------~~~~~~~~~i~D~~g~~~ 73 (211)
+||+++|++++|||||+++|+.. .+ .+ ...+....+....+. ..+..+.+++|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 11 11 112223223333322 123367899999999865
Q ss_pred ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHH----
Q 028292 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--SKKEGIDFAR---- 147 (211)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~---- 147 (211)
+..........+|++++|+|+++......... +. ... ..++|+++++||+|+...... ..++..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~ 154 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGE----ILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLE 154 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHH----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 54333344567899999999988654433322 21 111 236799999999998543221 1222222211
Q ss_pred ---HhCCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 148 ---EYGCLFLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 148 ---~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
..+++++++||++|.|+++++++|.+++.-
T Consensus 155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred hcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 135789999999999999999999988754
No 173
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.89 E-value=2.6e-22 Score=143.46 Aligned_cols=152 Identities=18% Similarity=0.188 Sum_probs=105.5
Q ss_pred ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc----------c
Q 028292 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE----------R 73 (211)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~ 73 (211)
+.+.+..+.++|+++|++|+|||||++++++..+ ..+.++.+.+.....+..++ .+.+|||||.. .
T Consensus 10 ~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~ 86 (179)
T TIGR03598 10 LKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEK 86 (179)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHH
Confidence 3466678889999999999999999999998864 55566666666555554443 68999999942 2
Q ss_pred cccccccccc---CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHH
Q 028292 74 FRTLTSSYYR---GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VSKKEGIDFARE 148 (211)
Q Consensus 74 ~~~~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~ 148 (211)
+..+...+++ .++++++|+|.+++.+..... +...+. ..++|+++++||+|+..... ...+++++....
T Consensus 87 ~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~----~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~ 160 (179)
T TIGR03598 87 WQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLR----ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKK 160 (179)
T ss_pred HHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh
Confidence 2223333443 458999999998865554432 333333 35789999999999864322 223344445554
Q ss_pred hC--CcEEEeccCCCCCHH
Q 028292 149 YG--CLFLECSAKTRVNVE 165 (211)
Q Consensus 149 ~~--~~~~~~Sa~~~~~v~ 165 (211)
.+ ..++++||++|+|++
T Consensus 161 ~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 161 DADDPSVQLFSSLKKTGID 179 (179)
T ss_pred ccCCCceEEEECCCCCCCC
Confidence 43 489999999999973
No 174
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.89 E-value=1.3e-21 Score=161.00 Aligned_cols=155 Identities=17% Similarity=0.221 Sum_probs=109.7
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
..+..+|+++|++++|||||+++|.+..+. ...+....+.....+.+.+. ..++||||||++.|..++...+..+|++
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 457789999999999999999999987762 22222223333333444332 2789999999999999998889999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-------C--CcEEEeccC
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-------G--CLFLECSAK 159 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~ 159 (211)
|+|+|+++....+.... + .... ..++|+++++||+|+.+. ..++........ + .+++++||+
T Consensus 163 ILVVda~dgv~~qT~e~-i-~~~~----~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk 233 (587)
T TIGR00487 163 VLVVAADDGVMPQTIEA-I-SHAK----AANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSAL 233 (587)
T ss_pred EEEEECCCCCCHhHHHH-H-HHHH----HcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence 99999987532222211 2 1111 467999999999998543 223333333222 2 479999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028292 160 TRVNVEQCFEELVLK 174 (211)
Q Consensus 160 ~~~~v~~~~~~i~~~ 174 (211)
+|+|+++++++|...
T Consensus 234 tGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 234 TGDGIDELLDMILLQ 248 (587)
T ss_pred CCCChHHHHHhhhhh
Confidence 999999999998753
No 175
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.89 E-value=4.6e-22 Score=144.80 Aligned_cols=160 Identities=20% Similarity=0.204 Sum_probs=101.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC----CCCC--CcceeeeEEEEEE-----------------------EC--C----
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF----EELS--PTIGVDFKIKHVA-----------------------LG--G---- 58 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~----~~~~--~~~~~~~~~~~~~-----------------------~~--~---- 58 (211)
++|+++|+.|+|||||+..+.+... .+.. .+....+...... .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 5899999999999999999975421 1111 1111111110000 00 0
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-
Q 028292 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV- 137 (211)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~- 137 (211)
....+.||||||++.+...+...+..+|++++|+|++++.........+. .+.. ....|+++++||+|+......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~-~~~~---~~~~~iiivvNK~Dl~~~~~~~ 156 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLA-ALEI---MGLKHIIIVQNKIDLVKEEQAL 156 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHH-HHHH---cCCCcEEEEEEchhccCHHHHH
Confidence 12678999999998888877778889999999999987421111111121 1221 123578999999998543221
Q ss_pred -CHHHHHHHHHHh---CCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 138 -SKKEGIDFAREY---GCLFLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 138 -~~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
..++..++.... +.+++++||++|+|+++++++|.+.+.+
T Consensus 157 ~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 157 ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 112333333332 5689999999999999999999887654
No 176
>PRK11058 GTPase HflX; Provisional
Probab=99.89 E-value=1.3e-21 Score=155.74 Aligned_cols=157 Identities=20% Similarity=0.170 Sum_probs=107.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc--ccccc------cccc
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF--RTLTS------SYYR 83 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~~------~~~~ 83 (211)
..+|+++|.+|||||||+|+|++.... ...+..+.+.....+.+.+. ..+.+|||+|.... ...+. ..+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999987652 12222223333334444432 26789999996321 22222 2357
Q ss_pred CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCc-EEEeccCCCC
Q 028292 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCL-FLECSAKTRV 162 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~ 162 (211)
.+|++|+|+|++++.+++.+.. +...+.... ..++|+++|+||+|+.+... ... . ....+.+ ++.+||++|.
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~-~~~~pvIiV~NKiDL~~~~~---~~~-~-~~~~~~~~~v~ISAktG~ 348 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEA-VNTVLEEID-AHEIPTLLVMNKIDMLDDFE---PRI-D-RDEENKPIRVWLSAQTGA 348 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHH-HHHHHHHhc-cCCCCEEEEEEcccCCCchh---HHH-H-HHhcCCCceEEEeCCCCC
Confidence 8999999999999988777654 555554443 45799999999999854311 111 1 1123555 5889999999
Q ss_pred CHHHHHHHHHHHHHc
Q 028292 163 NVEQCFEELVLKILD 177 (211)
Q Consensus 163 ~v~~~~~~i~~~~~~ 177 (211)
|+++++++|.+.+..
T Consensus 349 GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 349 GIPLLFQALTERLSG 363 (426)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999998854
No 177
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=3.9e-22 Score=139.52 Aligned_cols=142 Identities=17% Similarity=0.152 Sum_probs=99.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----ccccccccccCccEEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~~~d~~il 90 (211)
+|+++|.+|+|||||+++|.+... ....+.+ +.+... .+|||||... +.......+.++|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-LARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-cCccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 799999999999999999886432 1112211 122222 2699999622 21112233689999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC--cEEEeccCCCCCHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC--LFLECSAKTRVNVEQCF 168 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~v~~~~ 168 (211)
|+|+++.+++.. . +...+ ..++|+++++||+|+.+ ...+...++....++ +++++||++|+|+++++
T Consensus 71 v~d~~~~~s~~~--~-~~~~~-----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 71 VHGANDPESRLP--A-GLLDI-----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred EEeCCCcccccC--H-HHHhc-----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 999998876632 1 22211 24679999999999854 234566677777775 89999999999999999
Q ss_pred HHHHHHHHcCC
Q 028292 169 EELVLKILDTP 179 (211)
Q Consensus 169 ~~i~~~~~~~~ 179 (211)
.++.+.+.+..
T Consensus 140 ~~l~~~~~~~~ 150 (158)
T PRK15467 140 DYLASLTKQEE 150 (158)
T ss_pred HHHHHhchhhh
Confidence 99988876543
No 178
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.88 E-value=1.3e-21 Score=142.25 Aligned_cols=119 Identities=20% Similarity=0.306 Sum_probs=89.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc-cEEEEEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA-QGIIMVYD 93 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-d~~ilv~d 93 (211)
+|+++|+++||||+|+++|....+....++.............+....+.+||+||+..++..+..+++++ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999988744444433222222222123456799999999999988888889998 99999999
Q ss_pred CCCh-hcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCC
Q 028292 94 VTRR-DTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 94 ~~~~-~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~ 133 (211)
+.+. .++.....+++..+.... ...++|+++++||+|+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 9998 677777775665554322 136899999999999854
No 179
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=1.1e-21 Score=158.22 Aligned_cols=152 Identities=23% Similarity=0.196 Sum_probs=109.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccCcc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE--------RFRTLTSSYYRGAQ 86 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~~d 86 (211)
+|+++|.+|||||||+|+|++..........|.+.......+......+.+|||||.. .+......++.++|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999987764455555554443333332233468999999952 33344566788999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHH
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVE 165 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~ 165 (211)
++++|+|..+..+.... . +...++ ..++|+++|+||+|+...... . ......++ .++++||++|.|++
T Consensus 81 ~vl~vvD~~~~~~~~d~-~-i~~~l~----~~~~piilVvNK~D~~~~~~~----~-~~~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 81 VILFVVDGREGLTPEDE-E-IAKWLR----KSGKPVILVANKIDGKKEDAV----A-AEFYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred EEEEEEeCCCCCCHHHH-H-HHHHHH----HhCCCEEEEEECccCCccccc----H-HHHHhcCCCCeEEEeCCcCCChH
Confidence 99999999886544332 1 333333 247899999999998654321 1 22345676 79999999999999
Q ss_pred HHHHHHHHHHHc
Q 028292 166 QCFEELVLKILD 177 (211)
Q Consensus 166 ~~~~~i~~~~~~ 177 (211)
++++++.+.+.+
T Consensus 150 ~ll~~i~~~l~~ 161 (429)
T TIGR03594 150 DLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHhcCc
Confidence 999999988754
No 180
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.88 E-value=3.5e-22 Score=130.82 Aligned_cols=160 Identities=24% Similarity=0.354 Sum_probs=126.2
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+.|+|+++|-.++|||||+..|.+.......|+.|. ..+.+.++ .++.+++||.+|+...+..|..++.+.|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GF--n~k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGF--NTKKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCc--ceEEEeec-CcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 6789999999999999999999999888888888884 44444443 46799999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKK---EGIDFAREYGCLFLECSAKTRVNVEQC 167 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 167 (211)
|+|.+|...|+++-..+..++.... ...+|+.+.+||.|+.-...+... .-........+.+.+|||.+++|+.+-
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeK-l~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg 170 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEK-LAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDG 170 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhh-hhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCc
Confidence 9999999999988775655555443 677999999999998543322211 111222233457899999999999999
Q ss_pred HHHHHHH
Q 028292 168 FEELVLK 174 (211)
Q Consensus 168 ~~~i~~~ 174 (211)
.+|+...
T Consensus 171 ~~wv~sn 177 (185)
T KOG0074|consen 171 SDWVQSN 177 (185)
T ss_pred chhhhcC
Confidence 9888643
No 181
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=2.1e-21 Score=156.78 Aligned_cols=162 Identities=23% Similarity=0.168 Sum_probs=113.2
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------cc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-----------TS 79 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~ 79 (211)
...++|+++|.+|+|||||+++|++.......+..|++.......+......+.+|||||....... ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 4579999999999999999999998775445555666666555444334456889999995432211 12
Q ss_pred ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH-HHHH----HhCCcEE
Q 028292 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGI-DFAR----EYGCLFL 154 (211)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~----~~~~~~~ 154 (211)
.++..+|++|+|+|++++.+..+.. +...+. ..++|+++|+||+|+.+... .++.. +... ...++++
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~----~~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~ 322 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR--IAGLAL----EAGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIV 322 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEE
Confidence 3567899999999999987766543 233332 35789999999999863321 11111 1111 1246899
Q ss_pred EeccCCCCCHHHHHHHHHHHHHcCCC
Q 028292 155 ECSAKTRVNVEQCFEELVLKILDTPS 180 (211)
Q Consensus 155 ~~Sa~~~~~v~~~~~~i~~~~~~~~~ 180 (211)
++||++|.|++++++.+.+...+...
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~~~~~~ 348 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAYENANR 348 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999887765443
No 182
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=4e-21 Score=160.49 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=111.8
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCcce--eeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIG--VDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
..+..+|+|+|+.++|||||+++|....+.. ...... ...+...+...+....++||||||+..|..++...+..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 4577899999999999999999999876622 111121 1223333334445688999999999999999998999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH-------HHHhC--CcEEEec
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDF-------AREYG--CLFLECS 157 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~S 157 (211)
++|+|+|+++....+.... +. .+. ..++|+++++||+|+.... ..+..+. ...++ ++++++|
T Consensus 321 iaILVVDA~dGv~~QT~E~-I~-~~k----~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VS 391 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEA-IN-YIQ----AANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPIS 391 (742)
T ss_pred EEEEEEECcCCCChhhHHH-HH-HHH----hcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEE
Confidence 9999999988533222221 21 121 4679999999999986532 2222221 12233 6899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q 028292 158 AKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 158 a~~~~~v~~~~~~i~~~~ 175 (211)
|++|.|+++++++|....
T Consensus 392 AktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 392 ASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCCHHHHHHhhhhhh
Confidence 999999999999998764
No 183
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=1.4e-21 Score=157.74 Aligned_cols=148 Identities=24% Similarity=0.227 Sum_probs=104.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceee--eEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSSYYR 83 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 83 (211)
.+|+++|.+|||||||+++|.+..........+.+ .......+++ ..+.+|||||... +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987753333444443 3333444444 6789999999876 2223445678
Q ss_pred CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCC
Q 028292 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRV 162 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (211)
++|++|+|+|++++.+..+.. +...+. ..++|+++|+||+|+... .....++ ...++ .++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~--~~~~l~----~~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEE--IAKILR----KSNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHH--HHHHHH----HcCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998864443211 223333 247899999999996431 1222222 35566 48999999999
Q ss_pred CHHHHHHHHHHH
Q 028292 163 NVEQCFEELVLK 174 (211)
Q Consensus 163 ~v~~~~~~i~~~ 174 (211)
|++++++++...
T Consensus 149 gv~~l~~~I~~~ 160 (435)
T PRK00093 149 GIGDLLDAILEE 160 (435)
T ss_pred CHHHHHHHHHhh
Confidence 999999999883
No 184
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.87 E-value=3.6e-21 Score=159.00 Aligned_cols=155 Identities=21% Similarity=0.230 Sum_probs=113.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
+.|+++|++++|||||+++|++... .+..+..+.+.....+...+ ..+.|||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 4799999999999999999996432 22333334344444455544 78999999999999888888889999999
Q ss_pred EEEECCCh---hcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc--CHHHHHHHHHHh----CCcEEEeccC
Q 028292 90 MVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV--SKKEGIDFAREY----GCLFLECSAK 159 (211)
Q Consensus 90 lv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa~ 159 (211)
+|+|+++. ++++.+ ..+. ..++| +++|+||+|+.+...+ ..+++.++.... +++++++||+
T Consensus 79 LVVDa~~G~~~qT~ehl-----~il~----~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL-----AVLD----LLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred EEEECCCCCcHHHHHHH-----HHHH----HcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 99999984 344332 2222 24677 9999999999654432 233444555544 4789999999
Q ss_pred CCCCHHHHHHHHHHHHHcCC
Q 028292 160 TRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 160 ~~~~v~~~~~~i~~~~~~~~ 179 (211)
+|.|+++++.+|...+....
T Consensus 150 tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 150 TGQGIGELKKELKNLLESLD 169 (581)
T ss_pred CCCCchhHHHHHHHHHHhCC
Confidence 99999999999988776543
No 185
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=1.2e-21 Score=141.04 Aligned_cols=159 Identities=21% Similarity=0.205 Sum_probs=107.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCC--C---------------CCCcceeeeEEEEEEEC--CeEEEEEEEeCCCcc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE--E---------------LSPTIGVDFKIKHVALG--GKKMKLAIWDTAGQE 72 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~--~---------------~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~ 72 (211)
+.++|+++|+.++|||||+.+|+..... . .....+.+.......+. .....++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999999999999864421 1 00111222222222222 455789999999999
Q ss_pred cccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHH-HHHHHh-
Q 028292 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VSKKEGI-DFAREY- 149 (211)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~-~~~~~~- 149 (211)
.+.......+..+|++|+|+|+.+........ ....+. ..++|+++++||+|+...+. ...++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~--~l~~~~----~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEE--HLKILR----ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHH--HHHHHH----HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeeccccccccccc--cccccc----ccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 98888888899999999999999774433222 333333 46788999999999862111 0011111 232332
Q ss_pred -----CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 150 -----GCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 150 -----~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
.++++++||.+|.|++++++.|.+.+.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 257999999999999999999988753
No 186
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.7e-22 Score=135.21 Aligned_cols=161 Identities=27% Similarity=0.384 Sum_probs=125.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC--------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYY 82 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 82 (211)
...+.|+++|.-++|||||+..+..... ....++.|.... .+.+. ...+.+||..|++..+++|..++
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~--~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVC--NAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeec--cceeEEEEcCChHHHHHHHHHHH
Confidence 3458899999999999999998864321 344455553333 33333 45799999999999999999999
Q ss_pred cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH------HhCCcEEEe
Q 028292 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR------EYGCLFLEC 156 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~ 156 (211)
..++++|+++|+++++.|+.....+...+.... ..++|+++.+||.|+.+... .+++..... ....++.++
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~-leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEK-LEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHH-hcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCccccc
Confidence 999999999999999999998886666665544 78999999999999855432 233332222 223689999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcC
Q 028292 157 SAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 157 Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
||.+|+||++...|+...+..+
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999999877
No 187
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.87 E-value=7e-21 Score=160.33 Aligned_cols=155 Identities=17% Similarity=0.221 Sum_probs=109.7
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (211)
...+...|+|+|+.++|||||+++|....+. ........+.....+.+. ...++||||||+..|..++...+..+|+
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCE
Confidence 3568889999999999999999999887662 222222222222333333 3579999999999999999888999999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-------HHHHhC--CcEEEecc
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID-------FAREYG--CLFLECSA 158 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~Sa 158 (211)
+|+|+|+++...-+.... |. ... ..++|++|++||+|+.... ...... +...++ ++++++||
T Consensus 364 aILVVdAddGv~~qT~e~-i~-~a~----~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSA 434 (787)
T PRK05306 364 VVLVVAADDGVMPQTIEA-IN-HAK----AAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSA 434 (787)
T ss_pred EEEEEECCCCCCHhHHHH-HH-HHH----hcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence 999999988432222111 21 111 4679999999999985432 111111 122333 68999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028292 159 KTRVNVEQCFEELVLK 174 (211)
Q Consensus 159 ~~~~~v~~~~~~i~~~ 174 (211)
++|.|+++++++|...
T Consensus 435 ktG~GI~eLle~I~~~ 450 (787)
T PRK05306 435 KTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCCchHHHHhhhhh
Confidence 9999999999999864
No 188
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.4e-21 Score=134.19 Aligned_cols=166 Identities=32% Similarity=0.509 Sum_probs=140.1
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
...++++++|+.|.||||++++++.+.+ ..+.++.|.+.....+.-+...+++..|||.|++.+......++-++.++|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 4679999999999999999999999999 568889998888887776666799999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
++||+..+-++.++..++....+ . ..++||++.+||.|..... .......+.+..++.++++||+.+.|.+.-|.
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~r-v--~~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl 162 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVR-V--RENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFL 162 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHH-H--hcCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchH
Confidence 99999999999988884444444 3 3679999999999974433 22233345667788999999999999999999
Q ss_pred HHHHHHHcCCCc
Q 028292 170 ELVLKILDTPSL 181 (211)
Q Consensus 170 ~i~~~~~~~~~~ 181 (211)
|+.+.+.....+
T Consensus 163 ~LarKl~G~p~L 174 (216)
T KOG0096|consen 163 WLARKLTGDPSL 174 (216)
T ss_pred HHhhhhcCCCCe
Confidence 999999876543
No 189
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.87 E-value=8.8e-21 Score=156.98 Aligned_cols=160 Identities=24% Similarity=0.278 Sum_probs=115.4
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCC--CC------C------CCCcceeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDT--FE------E------LSPTIGVDFKIKHVAL-----GGKKMKLAIWDTAGQ 71 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~------~------~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~ 71 (211)
++..||+++|+.++|||||+.+|+... +. . .....|.++....+.+ ++..+.++||||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 355699999999999999999998632 11 0 1122344444333322 455789999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC
Q 028292 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC 151 (211)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 151 (211)
.++...+..++..+|++|+|+|+++....+.... |.... ..++|+++|+||+|+..... .....++...+++
T Consensus 85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~~-----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~ 156 (600)
T PRK05433 85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLAL-----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGI 156 (600)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHH-----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCC
Confidence 9999889899999999999999998766655444 33322 35789999999999854321 1122334344555
Q ss_pred c---EEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292 152 L---FLECSAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 152 ~---~~~~Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
. ++++||++|.|+++++++|.+.+...
T Consensus 157 ~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 157 DASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred CcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 3 89999999999999999999887543
No 190
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.86 E-value=4.2e-21 Score=134.12 Aligned_cols=151 Identities=21% Similarity=0.168 Sum_probs=104.2
Q ss_pred EEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCcccccc-------cccccccCccEEE
Q 028292 18 LIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQERFRT-------LTSSYYRGAQGII 89 (211)
Q Consensus 18 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-------~~~~~~~~~d~~i 89 (211)
++|++|+|||||++++.+..........+.+........... ...+.+||+||...... .....+..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 589999999999999998766333333333322222222211 45799999999765543 3334678999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKK---EGIDFAREYGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (211)
+|+|.++........ +..... ..+.|+++|+||+|+......... .........+.+++++|++++.|+++
T Consensus 81 ~v~~~~~~~~~~~~~--~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 81 FVVDADLRADEEEEK--LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEeCCCCCCHHHHH--HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence 999999987766543 122222 468999999999998655433322 12233334567999999999999999
Q ss_pred HHHHHHHH
Q 028292 167 CFEELVLK 174 (211)
Q Consensus 167 ~~~~i~~~ 174 (211)
+++++.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99999875
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=6.5e-21 Score=161.43 Aligned_cols=164 Identities=20% Similarity=0.183 Sum_probs=112.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCccc----------cccc-
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQER----------FRTL- 77 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~----------~~~~- 77 (211)
+..++|+++|.+|||||||+|+|++.......+..+++.. ...+.+++. .+.+|||||... +..+
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHH
Confidence 3568999999999999999999999875333333343333 334455554 467999999532 1111
Q ss_pred ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-HHh----CCc
Q 028292 78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-REY----GCL 152 (211)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~----~~~ 152 (211)
....++.+|++++|+|+++..++++... + ..+. ..++|+++|+||+|+.+... .+...... ..+ ..+
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i-~-~~~~----~~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ 597 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKV-M-SMAV----DAGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWAR 597 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHH-H-HHHH----HcCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCC
Confidence 1234688999999999999888776543 2 2232 35799999999999954322 11111111 111 246
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHcCCCcccC
Q 028292 153 FLECSAKTRVNVEQCFEELVLKILDTPSLLSE 184 (211)
Q Consensus 153 ~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~ 184 (211)
++++||++|.|++++++.+.+.+.......+.
T Consensus 598 ii~iSAktg~gv~~L~~~i~~~~~~~~~~i~T 629 (712)
T PRK09518 598 RVNLSAKTGWHTNRLAPAMQEALESWDQRIPT 629 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcccCCh
Confidence 79999999999999999999998875554443
No 192
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.86 E-value=1.3e-20 Score=159.41 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=118.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc----------cccc-
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL----------TSSY- 81 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~~- 81 (211)
.++|+++|++|||||||+|+|++... ...+..|.+.......+......+.+|||||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 47899999999999999999998765 55666888887777777777788999999997665421 1122
Q ss_pred -ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292 82 -YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT 160 (211)
Q Consensus 82 -~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (211)
...+|++++|+|.++.+.. .. +...+. ..++|+++++||+|+.+.+.+ ..+..++.+.++++++++||.+
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~-l~~ql~----e~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LY-LTLQLL----ELGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HH-HHHHHH----HcCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeec
Confidence 2478999999999886432 22 222232 357999999999998655544 3455677788999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 028292 161 RVNVEQCFEELVLKIL 176 (211)
Q Consensus 161 ~~~v~~~~~~i~~~~~ 176 (211)
++|++++.+.+.+...
T Consensus 153 g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 153 GRGIEALKLAIDRHQA 168 (772)
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999987653
No 193
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=7.7e-21 Score=160.99 Aligned_cols=155 Identities=19% Similarity=0.140 Sum_probs=109.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--------cccccccccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSSYYR 83 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~ 83 (211)
...+|+++|.+|||||||+|+|++.......+.+|.+..............+.+|||||... +......++.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 44689999999999999999999887655566667666555544433345788999999653 2233445678
Q ss_pred CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCC
Q 028292 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRV 162 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (211)
.+|++|+|+|+++.....+ ..|...+. ..++|+++|+||+|+.... ....++ ...+. ..+++||++|.
T Consensus 354 ~aD~iL~VvDa~~~~~~~d--~~i~~~Lr----~~~~pvIlV~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSA~~g~ 422 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTD--ERIVRMLR----RAGKPVVLAVNKIDDQASE----YDAAEF-WKLGLGEPYPISAMHGR 422 (712)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHH----hcCCCEEEEEECcccccch----hhHHHH-HHcCCCCeEEEECCCCC
Confidence 9999999999987532222 12444443 3679999999999985432 111222 12233 46789999999
Q ss_pred CHHHHHHHHHHHHHc
Q 028292 163 NVEQCFEELVLKILD 177 (211)
Q Consensus 163 ~v~~~~~~i~~~~~~ 177 (211)
|+.+++++|++.+.+
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999998854
No 194
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=3.6e-21 Score=149.73 Aligned_cols=152 Identities=20% Similarity=0.102 Sum_probs=118.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc---------ccccccccC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR---------TLTSSYYRG 84 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~ 84 (211)
..|+++|-||||||||.|||++.+...+..++|.|.+............+.++||+|.+... ......+.+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999998888888988777766665566679999999955322 334556789
Q ss_pred ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCC
Q 028292 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVN 163 (211)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 163 (211)
+|++|||+|....-+-++-. +...++ ..++|+++|+||+|.. ..+.....+-.+|+ .++.+||..|.|
T Consensus 84 ADvilfvVD~~~Git~~D~~--ia~~Lr----~~~kpviLvvNK~D~~-----~~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 84 ADVILFVVDGREGITPADEE--IAKILR----RSKKPVILVVNKIDNL-----KAEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHH--HHHHHH----hcCCCEEEEEEcccCc-----hhhhhHHHHHhcCCCCceEeehhhccC
Confidence 99999999998854433211 333333 4679999999999973 33344445566676 799999999999
Q ss_pred HHHHHHHHHHHHH
Q 028292 164 VEQCFEELVLKIL 176 (211)
Q Consensus 164 v~~~~~~i~~~~~ 176 (211)
+.++++++++.+.
T Consensus 153 i~dLld~v~~~l~ 165 (444)
T COG1160 153 IGDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999984
No 195
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.86 E-value=1.6e-20 Score=138.55 Aligned_cols=178 Identities=17% Similarity=0.171 Sum_probs=127.5
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc------------c
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER------------F 74 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------------~ 74 (211)
+++..+..+|+|+|.||+|||||.|.+.+.+......-+.++.....-.+.....++.|+||||.-. .
T Consensus 66 e~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~ 145 (379)
T KOG1423|consen 66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSV 145 (379)
T ss_pred chhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHh
Confidence 3556789999999999999999999999999977777777777777777777778999999999211 1
Q ss_pred cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC------------HHHH
Q 028292 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS------------KKEG 142 (211)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------------~~~~ 142 (211)
-+..+..+..+|++++++|+++....-+.. .+..+..+ ..+|-++|+||.|......+. ....
T Consensus 146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~k 220 (379)
T KOG1423|consen 146 LQNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLK 220 (379)
T ss_pred hhCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhh
Confidence 123345567899999999999643322211 23333333 468889999999974321110 0011
Q ss_pred HHHHHHh-------------CC----cEEEeccCCCCCHHHHHHHHHHHHHcCCCcccCCCCCc
Q 028292 143 IDFAREY-------------GC----LFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGV 189 (211)
Q Consensus 143 ~~~~~~~-------------~~----~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~ 189 (211)
.++..++ +. .+|.+||++|+||+++-++|..++....++++.+.-..
T Consensus 221 l~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~ 284 (379)
T KOG1423|consen 221 LEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTE 284 (379)
T ss_pred hhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccc
Confidence 1222221 12 38999999999999999999999999999998765443
No 196
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.86 E-value=9e-21 Score=156.82 Aligned_cols=144 Identities=19% Similarity=0.241 Sum_probs=104.5
Q ss_pred cCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEE--EEEECCeEEEEEEEeCCCccccccc------ccccc--cCccEEE
Q 028292 20 GDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIK--HVALGGKKMKLAIWDTAGQERFRTL------TSSYY--RGAQGII 89 (211)
Q Consensus 20 G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~d~~i 89 (211)
|.+|||||||+|++++... ...+.+|.+.... .+.+++ ..+++|||||...+... .+.++ .++|+++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence 8999999999999998775 3334445544443 444444 45889999998776543 23332 4789999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
+|+|.++.+.. .. +...+. ..++|+++|+||+|+.+.+.+. .+...+.+..+++++++||++|+|++++++
T Consensus 78 ~VvDat~ler~---l~-l~~ql~----~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~ 148 (591)
T TIGR00437 78 NVVDASNLERN---LY-LTLQLL----ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKD 148 (591)
T ss_pred EEecCCcchhh---HH-HHHHHH----hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence 99999885432 12 222221 3579999999999986555443 345677888899999999999999999999
Q ss_pred HHHHHH
Q 028292 170 ELVLKI 175 (211)
Q Consensus 170 ~i~~~~ 175 (211)
++.+.+
T Consensus 149 ~i~~~~ 154 (591)
T TIGR00437 149 AIRKAI 154 (591)
T ss_pred HHHHHh
Confidence 998764
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.85 E-value=1.8e-20 Score=150.69 Aligned_cols=156 Identities=19% Similarity=0.101 Sum_probs=105.6
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCCC------------------------------CCCCcceeeeEEEEEEECCe
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFE------------------------------ELSPTIGVDFKIKHVALGGK 59 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 59 (211)
....++|+++|++++|||||+++|+...-. ......|.+.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 346799999999999999999999843220 01113456666666666667
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc---
Q 028292 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--- 136 (211)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--- 136 (211)
.+.+.||||||++.+.......+..+|++++|+|+++...+......+...... ....|+++++||+|+.....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~---~~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART---LGINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH---cCCCeEEEEEEccccccccHHHH
Confidence 789999999999887665556678999999999998731121111112222222 12246899999999864221
Q ss_pred -cCHHHHHHHHHHhC-----CcEEEeccCCCCCHHHHH
Q 028292 137 -VSKKEGIDFAREYG-----CLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 137 -~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~ 168 (211)
...+++.++....+ ++++++||++|+|+++..
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 12234445555444 479999999999998754
No 198
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.85 E-value=1.5e-20 Score=146.75 Aligned_cols=156 Identities=19% Similarity=0.162 Sum_probs=122.8
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------ccccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSYY 82 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~ 82 (211)
..-++|+++|.||||||||+|.|++.+...+.+..|+|++..+..++-.++++.++||+|..+-... ....+
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999999999888888889999999996543321 23346
Q ss_pred cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC
Q 028292 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV 162 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (211)
.++|.+++|+|.+.+.+-.+..- +. ....++|+++|.||.|+......... ....+.+++.+|+++++
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~--~~-----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~ 362 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLAL--IE-----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGE 362 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHH--HH-----hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCcc
Confidence 89999999999999743333322 11 12578999999999999665442211 12223479999999999
Q ss_pred CHHHHHHHHHHHHHcC
Q 028292 163 NVEQCFEELVLKILDT 178 (211)
Q Consensus 163 ~v~~~~~~i~~~~~~~ 178 (211)
|++.+.+.|.+.+...
T Consensus 363 Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 363 GLDALREAIKQLFGKG 378 (454)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999988766
No 199
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=4e-20 Score=143.95 Aligned_cols=165 Identities=22% Similarity=0.158 Sum_probs=125.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------ccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-----------TSS 80 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~~~ 80 (211)
..++|+++|.||+|||||+|+|++.......+..|++.+.....++.....+.++||+|-..-... ...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 579999999999999999999999998889999999999998888766677889999994432211 122
Q ss_pred cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-Hh----CCcEEE
Q 028292 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-EY----GCLFLE 155 (211)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~----~~~~~~ 155 (211)
.+..+|++++|+|++.+-+-++.. +...+. ..+.++++|+||+|+.+......++...... .+ .++++.
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~--ia~~i~----~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLR--IAGLIE----EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHH--HHHHHH----HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 356789999999999985544432 333333 6789999999999987664344433332222 21 358999
Q ss_pred eccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028292 156 CSAKTRVNVEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 156 ~Sa~~~~~v~~~~~~i~~~~~~~~~~~ 182 (211)
+||+++.++..+|+.+.+.........
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~ri 357 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATRRI 357 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhcccc
Confidence 999999999999999988876655444
No 200
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=3.2e-21 Score=126.70 Aligned_cols=162 Identities=22% Similarity=0.312 Sum_probs=126.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
+..+|+++|.-|+|||+++.++.-++.....|++|........ ....+++||..|+-..+..|+.++.+.|++|+|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIyV 92 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV 92 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence 7899999999999999999999988888888888854443333 667899999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc---ccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER---VVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
+|.+|....--....++.++.... ..+.-+++++||.|..... ++.......-.++.-+.+|+.||.+|+|++..+
T Consensus 93 VDssd~dris~a~~el~~mL~E~e-Lq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 93 VDSSDRDRISIAGVELYSMLQEEE-LQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EeccchhhhhhhHHHHHHHhccHh-hcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence 999998766555554555554333 5567788999999974432 111112222233344789999999999999999
Q ss_pred HHHHHHHHcC
Q 028292 169 EELVLKILDT 178 (211)
Q Consensus 169 ~~i~~~~~~~ 178 (211)
+|+.+.+.++
T Consensus 172 DWL~~~l~~~ 181 (182)
T KOG0072|consen 172 DWLQRPLKSR 181 (182)
T ss_pred HHHHHHHhcc
Confidence 9999988754
No 201
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.84 E-value=2.2e-20 Score=136.42 Aligned_cols=148 Identities=21% Similarity=0.159 Sum_probs=96.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCC------------------------------CCcceeeeEEEEEEECCeEEEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL------------------------------SPTIGVDFKIKHVALGGKKMKLA 64 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 64 (211)
||+++|++|+|||||+++|+...-... ....|.+.......+.....++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999986432111 01133444444444545556789
Q ss_pred EEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc----CHH
Q 028292 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV----SKK 140 (211)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~ 140 (211)
||||||+.++.......+..+|++|+|+|++++..-... . ....... ....++++|+||+|+...... ...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~-~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-R-HSYILSL---LGIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-H-HHHHHHH---cCCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 999999988766666678899999999999876322211 1 1222222 122457889999998643221 122
Q ss_pred HHHHHHHHhCC---cEEEeccCCCCCHHHH
Q 028292 141 EGIDFAREYGC---LFLECSAKTRVNVEQC 167 (211)
Q Consensus 141 ~~~~~~~~~~~---~~~~~Sa~~~~~v~~~ 167 (211)
+...+....+. +++++||++|.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 34444555553 5899999999999753
No 202
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.84 E-value=2.1e-22 Score=137.87 Aligned_cols=176 Identities=36% Similarity=0.575 Sum_probs=143.9
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeE-EEEEEEeCCCcccccccccccccCccE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK-MKLAIWDTAGQERFRTLTSSYYRGAQG 87 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (211)
....++++|+|.-++|||+++.+++...+ ..+..+.|.++.......+... +++.+||+.|++++..+.+.+++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 34568999999999999999999999888 5677788877776666555444 678999999999999999999999999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhh---cCCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHHhCC-cEEEeccCCCC
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLY---STNQDCIKLLVGNKVDKESERVVS-KKEGIDFAREYGC-LFLECSAKTRV 162 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~ 162 (211)
.++|||+++..+|+.... |.+.+... .....+|+++.+||||........ .....++.+++++ ..+++|++.+.
T Consensus 102 ~~iVfdvt~s~tfe~~sk-wkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSK-WKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred eEEEEEccccccccHHHH-HHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 999999999999998887 77666533 334568889999999985443322 4667788888887 79999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcccCCC
Q 028292 163 NVEQCFEELVLKILDTPSLLSEGS 186 (211)
Q Consensus 163 ~v~~~~~~i~~~~~~~~~~~~~~~ 186 (211)
++.+....+++.++-+........
T Consensus 181 ni~Ea~r~lVe~~lvnd~q~~~s~ 204 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVNDEQPIKSS 204 (229)
T ss_pred ChhHHHHHHHHHHHhhccCCcccc
Confidence 999999999999987775444433
No 203
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=1.4e-19 Score=127.10 Aligned_cols=167 Identities=17% Similarity=0.202 Sum_probs=123.0
Q ss_pred CCccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------c
Q 028292 3 SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------Q 71 (211)
Q Consensus 3 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~ 71 (211)
+.+.+-+.+...-|+++|-+|||||||||+|++.+- ...+.++|.|.....+.+++. +.++|.|| .
T Consensus 14 ~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~ 90 (200)
T COG0218 14 PDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVK 90 (200)
T ss_pred CCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHH
Confidence 344566777889999999999999999999999775 889999999999999888775 77889999 3
Q ss_pred cccccccccccc---CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH--HHHH-HH
Q 028292 72 ERFRTLTSSYYR---GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK--KEGI-DF 145 (211)
Q Consensus 72 ~~~~~~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~-~~ 145 (211)
+.+..+...|+. +..++++++|+..+..-.+. ..++++. ..++|++||+||+|.....+... .... .+
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~----~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l 164 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLL----ELGIPVIVVLTKADKLKKSERNKQLNKVAEEL 164 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHH----HcCCCeEEEEEccccCChhHHHHHHHHHHHHh
Confidence 344455555553 45889999999988554333 1444444 57899999999999865443321 1111 22
Q ss_pred HHHhCCc--EEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292 146 AREYGCL--FLECSAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 146 ~~~~~~~--~~~~Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
....... ++..|+.++.|++++...|.+.+.+.
T Consensus 165 ~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~~ 199 (200)
T COG0218 165 KKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKEA 199 (200)
T ss_pred cCCCCccceEEEEecccccCHHHHHHHHHHHhhcc
Confidence 2222222 78899999999999999999887643
No 204
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.84 E-value=4.7e-20 Score=148.24 Aligned_cols=156 Identities=19% Similarity=0.121 Sum_probs=106.2
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCC--CC----------------------------CCCCcceeeeEEEEEEECCe
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT--FE----------------------------ELSPTIGVDFKIKHVALGGK 59 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~----------------------------~~~~~~~~~~~~~~~~~~~~ 59 (211)
....++|+++|+.++|||||+.+|+... .. ......|.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 3466999999999999999999998621 11 01112244555555556666
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHH-HHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--
Q 028292 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADI-WAKEIDLYSTNQDCIKLLVGNKVDKESERV-- 136 (211)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-- 136 (211)
.+.+.|||+||++.|.......+.++|++|+|+|+++.+++...... +...... ....|+++++||+|+.....
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~---~~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART---LGINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH---cCCCeEEEEEEChhccCccHHH
Confidence 78899999999988876666677899999999999988543211110 1112221 22357899999999954222
Q ss_pred --cCHHHHHHHHHHhC-----CcEEEeccCCCCCHHHHH
Q 028292 137 --VSKKEGIDFAREYG-----CLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 137 --~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~ 168 (211)
...+++..++...+ ++++++||++|.|+.+.+
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 12344555666554 579999999999998744
No 205
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.83 E-value=2.6e-19 Score=132.67 Aligned_cols=152 Identities=24% Similarity=0.161 Sum_probs=99.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccCcc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-------TLTSSYYRGAQ 86 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d 86 (211)
+|+++|++|+|||||+++|++... ....+....+.....+.+.+ ..+++||+||..... ......++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999998764 11112222223333344443 568999999964332 12345688999
Q ss_pred EEEEEEECCChh-cHHHHHHHH----------------------------------------HHHHHhh-----------
Q 028292 87 GIIMVYDVTRRD-TFTNLADIW----------------------------------------AKEIDLY----------- 114 (211)
Q Consensus 87 ~~ilv~d~~~~~-s~~~~~~~~----------------------------------------~~~~~~~----------- 114 (211)
++++|+|+++++ ..+.+...+ ...+..+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 232222211 1111111
Q ss_pred ------------cCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292 115 ------------STNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 115 ------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 175 (211)
.....+|+++|+||+|+. ..++...++. ...++++||+++.|++++++.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 112347999999999984 3344444443 24689999999999999999998865
No 206
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=5.1e-19 Score=121.62 Aligned_cols=155 Identities=21% Similarity=0.260 Sum_probs=115.6
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCC-------------CCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEEL-------------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT 76 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (211)
.....||+|.|+.++||||+++.+........ ..+...++..... .....+.+++||||+++.-
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~---~~~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIEL---DEDTGVHLFGTPGQERFKF 83 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEE---cCcceEEEecCCCcHHHHH
Confidence 44678999999999999999999997763100 0112222222222 1235689999999999999
Q ss_pred cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh--CCcEE
Q 028292 77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY--GCLFL 154 (211)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~ 154 (211)
+|...+++++++|+++|.+++..+ +... ++..+... ..+|++|++||.|+.... ..+...+..... +++++
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~-ii~f~~~~---~~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi 156 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEE-IIDFLTSR---NPIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVI 156 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHH-HHHHHhhc---cCCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCcee
Confidence 999999999999999999999988 3333 44444432 239999999999996554 445555555544 78999
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 028292 155 ECSAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 155 ~~Sa~~~~~v~~~~~~i~~~ 174 (211)
+.+|.+++++.+.+..++..
T Consensus 157 ~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 157 EIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeecccchhHHHHHHHHHhh
Confidence 99999999999988888766
No 207
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=2e-19 Score=147.94 Aligned_cols=156 Identities=19% Similarity=0.154 Sum_probs=103.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCC-----CCcceeeeEEEEE------------EECCeEEEEEEEeCCCcccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEEL-----SPTIGVDFKIKHV------------ALGGKKMKLAIWDTAGQERF 74 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~-----~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~~ 74 (211)
+..-|+++|++++|||||+++|.+..+... ..+.|..+..... .+......+.||||||++.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 345699999999999999999998766221 1222222211110 00011124889999999999
Q ss_pred cccccccccCccEEEEEEECCC---hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc------------CH
Q 028292 75 RTLTSSYYRGAQGIIMVYDVTR---RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV------------SK 139 (211)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------------~~ 139 (211)
..++..++..+|++++|+|+++ +++++.+. .+. ..++|+++++||+|+.+.... ..
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~----~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~ 153 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN-----ILR----MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQE 153 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHH----HcCCCEEEEEECCCccchhhhccCchHHHHHHhhh
Confidence 9988888999999999999997 44444332 222 357899999999998532100 00
Q ss_pred HH------------HHHHHH------------Hh--CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 140 KE------------GIDFAR------------EY--GCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 140 ~~------------~~~~~~------------~~--~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
.. ..++.. ++ .++++++||++|+|+++++.+|.....
T Consensus 154 ~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 154 IQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 00 001110 11 358999999999999999999876543
No 208
>PRK10218 GTP-binding protein; Provisional
Probab=99.82 E-value=7.3e-19 Score=145.12 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=117.5
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh--CCCCC-------------CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTS--DTFEE-------------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT 76 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (211)
...||+++|+.++|||||+++|+. +.+.. .....|.++......+....+.+++|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 456999999999999999999997 33311 123456677777777777788999999999999999
Q ss_pred cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHH-------
Q 028292 77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VSKKEGIDFARE------- 148 (211)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~------- 148 (211)
.+..+++.+|++|+|+|+.+....+.. . +..... ..++|+++++||+|+...+. ...+++..+...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~-~-~l~~a~----~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTR-F-VTKKAF----AYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHH-H-HHHHHH----HcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 999999999999999999876433222 2 222222 36789999999999865432 112333333322
Q ss_pred hCCcEEEeccCCCC----------CHHHHHHHHHHHHHcC
Q 028292 149 YGCLFLECSAKTRV----------NVEQCFEELVLKILDT 178 (211)
Q Consensus 149 ~~~~~~~~Sa~~~~----------~v~~~~~~i~~~~~~~ 178 (211)
..++++.+||++|. ++..+++.|++.+...
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 34689999999998 5888888888777544
No 209
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=9.5e-19 Score=126.10 Aligned_cols=146 Identities=16% Similarity=0.118 Sum_probs=100.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL 77 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (211)
.++|+++|+.++|||||+++|+.... .......|.+.......+.....++.|+||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 48999999999999999999986411 011123455566666666666678999999999888777
Q ss_pred ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHh----
Q 028292 78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---SKKEGIDFAREY---- 149 (211)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~---- 149 (211)
....+..+|++++|+|+...-.-.. .. +...+. ..++| +++++||+|+...... ..+++..+....
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~-~~~~~~----~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT-RE-HLLLAR----QVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 7777889999999999987532221 12 222333 35566 7788999998532221 122344444443
Q ss_pred -CCcEEEeccCCCCCH
Q 028292 150 -GCLFLECSAKTRVNV 164 (211)
Q Consensus 150 -~~~~~~~Sa~~~~~v 164 (211)
+++++++||++|.++
T Consensus 156 ~~v~iipiSa~~g~n~ 171 (195)
T cd01884 156 DNTPIVRGSALKALEG 171 (195)
T ss_pred cCCeEEEeeCccccCC
Confidence 368999999999985
No 210
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.82 E-value=2.8e-19 Score=142.63 Aligned_cols=162 Identities=16% Similarity=0.154 Sum_probs=104.5
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCC--cceeeeEEE----E------------EEE----CC------eEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP--TIGVDFKIK----H------------VAL----GG------KKMK 62 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~----~------------~~~----~~------~~~~ 62 (211)
...++|+++|+.++|||||+++|.+...+.... ..|.+.... . ++. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 356899999999999999999997542211111 011111100 0 000 11 1457
Q ss_pred EEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHH
Q 028292 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--SKK 140 (211)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~ 140 (211)
+++||+||++.|...+......+|++++|+|+++......... .+..+.. ....|+++++||+|+.+.... ..+
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~---~gi~~iIVvvNK~Dl~~~~~~~~~~~ 157 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEI---IGIKNIVIVQNKIDLVSKEKALENYE 157 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHH---cCCCeEEEEEEccccCCHHHHHHHHH
Confidence 8999999999998888777888999999999996431111111 1222222 223578999999998653321 123
Q ss_pred HHHHHHHHh---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 141 EGIDFAREY---GCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 141 ~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
++..+.... +++++++||++|+|+++++++|...+.
T Consensus 158 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 158 EIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 333444332 578999999999999999999988654
No 211
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.81 E-value=4.5e-19 Score=119.27 Aligned_cols=135 Identities=22% Similarity=0.270 Sum_probs=97.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc----ccccccccccccCccEEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ----ERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~d~~il 90 (211)
||+++|+.|+|||||+++|.+... .+..|....+. =.++||||. ..+.........++|.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 799999999999999999998765 33333322211 134799992 2233333344568999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~ 169 (211)
+.|++++.+...-. +.. ..++|+|-|+||+|+.. ...+.+.+.++.+.-|+ .+|++|+.+|+|++++.+
T Consensus 70 l~dat~~~~~~pP~--fa~-------~f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 70 LQDATEPRSVFPPG--FAS-------MFNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred EecCCCCCccCCch--hhc-------ccCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 99999985432111 111 34689999999999863 34467777788888887 689999999999999998
Q ss_pred HHH
Q 028292 170 ELV 172 (211)
Q Consensus 170 ~i~ 172 (211)
+|-
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 874
No 212
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=6e-19 Score=124.49 Aligned_cols=151 Identities=20% Similarity=0.200 Sum_probs=99.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----------cccccccccc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----------FRTLTSSYYR 83 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~ 83 (211)
.|+++|.+|+|||||++.+++... ....++.+.+.....+..+. .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999996554 55556666655554444443 789999999432 2222233332
Q ss_pred ---CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHH--HhCCcEEEe
Q 028292 84 ---GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS--KKEGIDFAR--EYGCLFLEC 156 (211)
Q Consensus 84 ---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~ 156 (211)
..+++++++|.....+..... ....+. ..+.|+++++||+|+....... ......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~--~~~~l~----~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLE--MLDWLE----ELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHH--HHHHHH----HcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 457889999998764322211 223333 2358999999999985433211 112222222 234689999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 028292 157 SAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 157 Sa~~~~~v~~~~~~i~~~ 174 (211)
|++++.++.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999999875
No 213
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.81 E-value=4.4e-19 Score=146.53 Aligned_cols=159 Identities=20% Similarity=0.245 Sum_probs=114.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC--CCCC-------------CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD--TFEE-------------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT 78 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (211)
-||+++|+.++|||||+.+|+.. .+.. .....|.++......+....+.++||||||+.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 38999999999999999999863 2211 11233555665555555667889999999999999888
Q ss_pred cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHH-------HhC
Q 028292 79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-SKKEGIDFAR-------EYG 150 (211)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~ 150 (211)
..++..+|++++|+|+++... ..... ++..+. ..++|+++++||+|+...+.. ...+...+.. ...
T Consensus 82 ~~~l~~aD~alLVVDa~~G~~-~qT~~-~l~~a~----~~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~ 155 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGPM-PQTRF-VLKKAL----ELGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLD 155 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCCc-HHHHH-HHHHHH----HCCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccccc
Confidence 999999999999999987532 22233 333333 357899999999998654321 1233333332 235
Q ss_pred CcEEEeccCCCC----------CHHHHHHHHHHHHHcC
Q 028292 151 CLFLECSAKTRV----------NVEQCFEELVLKILDT 178 (211)
Q Consensus 151 ~~~~~~Sa~~~~----------~v~~~~~~i~~~~~~~ 178 (211)
++++++||++|. |+..+|+.|++.+...
T Consensus 156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 689999999996 7999999998887544
No 214
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.81 E-value=8.2e-19 Score=139.90 Aligned_cols=163 Identities=18% Similarity=0.177 Sum_probs=103.4
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCC--CcceeeeEEE----E------------EE----EC--C----eE
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIK----H------------VA----LG--G----KK 60 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~----~------------~~----~~--~----~~ 60 (211)
.....++|+++|+.++|||||+.+|.+...+... ...|.+.... . +. ++ + ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 3456799999999999999999999653211111 0111111110 0 00 00 0 13
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-
Q 028292 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS- 138 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~- 138 (211)
..++||||||+..+..........+|++++|+|++++. ..+.... + ..+.. ....|+++|+||+|+.+.....
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l-~~l~~---~~i~~iiVVlNK~Dl~~~~~~~~ 159 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-L-MALDI---IGIKNIVIVQNKIDLVSKERALE 159 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-H-HHHHH---cCCCcEEEEEEeeccccchhHHH
Confidence 57899999999888766656667789999999999653 1221111 2 12221 2234789999999986543221
Q ss_pred -HHHHHHHHHHh---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 139 -KKEGIDFAREY---GCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 139 -~~~~~~~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
.++...+.... +.+++++||++|.|+++++++|...+.
T Consensus 160 ~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 160 NYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 23333443332 478999999999999999999988764
No 215
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.80 E-value=7.9e-19 Score=130.27 Aligned_cols=112 Identities=17% Similarity=0.176 Sum_probs=81.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCC-----------------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFE-----------------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL 77 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (211)
+|+++|+.|+|||||+++|+...-. ......+.++......+......+++|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 6899999999999999999864210 00112233344444555556678999999999998888
Q ss_pred ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
+..+++.+|++++|+|+++..... ... +...+. ..++|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~-~~~~~~----~~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQ-TRI-LWRLLR----KLNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHH-HHH-HHHHHH----HcCCCEEEEEECcccc
Confidence 888999999999999999875432 222 333333 3578999999999985
No 216
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.80 E-value=1.8e-18 Score=142.86 Aligned_cols=156 Identities=21% Similarity=0.173 Sum_probs=102.1
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCC-----cceeeeEEEEEEE--CCeE-----E-----EEEEEeCCCccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP-----TIGVDFKIKHVAL--GGKK-----M-----KLAIWDTAGQER 73 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~-----~-----~~~i~D~~g~~~ 73 (211)
.++..|+++|++++|||||+++|.+.......+ +.|.++....... .+.. . .++||||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 466789999999999999999998665422211 2222211111000 0111 1 278999999999
Q ss_pred ccccccccccCccEEEEEEECCC---hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-------------
Q 028292 74 FRTLTSSYYRGAQGIIMVYDVTR---RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV------------- 137 (211)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------------- 137 (211)
|..++...+..+|++++|+|+++ +++++.+.. +. ..++|+++++||+|+.+....
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~-----~~----~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI-----LK----RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH-----HH----HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 99888888899999999999997 555544321 22 357899999999998521110
Q ss_pred --CHH--------HHHHHHHHh---------------CCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292 138 --SKK--------EGIDFAREY---------------GCLFLECSAKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 138 --~~~--------~~~~~~~~~---------------~~~~~~~Sa~~~~~v~~~~~~i~~~~ 175 (211)
... +........ .++++++||++|+|+++++..+...+
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 000 011111111 25799999999999999998887544
No 217
>PRK12736 elongation factor Tu; Reviewed
Probab=99.79 E-value=3.7e-18 Score=135.75 Aligned_cols=161 Identities=17% Similarity=0.115 Sum_probs=108.7
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (211)
....++|+++|+.++|||||+++|++... .......|.+.......+......+.|+||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 34679999999999999999999986311 011124455666666666666678899999999888
Q ss_pred cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHhC
Q 028292 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVS---KKEGIDFAREYG 150 (211)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~ 150 (211)
.......+..+|++++|+|++....-... . +...+. ..++| +++++||+|+....+.. .+++..+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~-~-~~~~~~----~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTR-E-HILLAR----QVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHH-H-HHHHHH----HcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 76666667889999999999875322221 2 222333 34677 67889999986433221 224445544444
Q ss_pred -----CcEEEeccCCCC--------CHHHHHHHHHHHHH
Q 028292 151 -----CLFLECSAKTRV--------NVEQCFEELVLKIL 176 (211)
Q Consensus 151 -----~~~~~~Sa~~~~--------~v~~~~~~i~~~~~ 176 (211)
++++++||++|. ++..+++.+.+.+.
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 589999999983 46666666666543
No 218
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.79 E-value=5.7e-19 Score=129.97 Aligned_cols=147 Identities=21% Similarity=0.173 Sum_probs=95.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC------------------------------CCCCCcceeeeEEEEEEECCeEEEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF------------------------------EELSPTIGVDFKIKHVALGGKKMKLA 64 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (211)
+|+++|+.++|||||+.+|+...- .......|.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999974211 01111234455555555555677899
Q ss_pred EEeCCCcccccccccccccCccEEEEEEECCChhc---H---HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC--cc
Q 028292 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---F---TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE--RV 136 (211)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~ 136 (211)
+|||||+..+...+...+..+|++|+|+|+++... | ..... ....... ...+|+++++||+|+... ..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTRE-HALLART---LGVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHH-HHHHHHH---cCCCeEEEEEEccccccccccH
Confidence 99999988777666677788999999999998521 1 11111 1112221 234789999999998632 11
Q ss_pred cC----HHHHHHHHHHhC-----CcEEEeccCCCCCHH
Q 028292 137 VS----KKEGIDFAREYG-----CLFLECSAKTRVNVE 165 (211)
Q Consensus 137 ~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~ 165 (211)
.. .+++.......+ ++++++||++|+|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 11 112222333333 579999999999987
No 219
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.79 E-value=4.6e-18 Score=141.15 Aligned_cols=157 Identities=17% Similarity=0.167 Sum_probs=103.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCC--CCcceeeeEEE--EEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEEL--SPTIGVDFKIK--HVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
+-|+++|+.++|||||+++|++...+.. ....|.+.... .+... ....+.|||+||++.|.......+.++|+++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 3588999999999999999996432111 11123333222 22221 2335899999999988777777788999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccC--HHHHHHHHHHhC---CcEEEeccCCCCC
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVS--KKEGIDFAREYG---CLFLECSAKTRVN 163 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~Sa~~~~~ 163 (211)
+|+|+++...-+.. + ....+. ..++| +++|+||+|+.+...+. .++..++....+ .+++++||++|.|
T Consensus 80 LVVda~eg~~~qT~-e-hl~il~----~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g 153 (614)
T PRK10512 80 LVVACDDGVMAQTR-E-HLAILQ----LTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG 153 (614)
T ss_pred EEEECCCCCcHHHH-H-HHHHHH----HcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence 99999874221111 1 122222 23455 57999999986532221 233444444444 6899999999999
Q ss_pred HHHHHHHHHHHHHc
Q 028292 164 VEQCFEELVLKILD 177 (211)
Q Consensus 164 v~~~~~~i~~~~~~ 177 (211)
+++++++|.+....
T Consensus 154 I~~L~~~L~~~~~~ 167 (614)
T PRK10512 154 IDALREHLLQLPER 167 (614)
T ss_pred CHHHHHHHHHhhcc
Confidence 99999999876543
No 220
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.79 E-value=5.3e-19 Score=140.40 Aligned_cols=174 Identities=25% Similarity=0.308 Sum_probs=129.0
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (211)
......+||+++|+.|+||||||-+++...+....|..-. .......+....+..+|+|++...+.+.....-++++|+
T Consensus 4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCC-ccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence 3445679999999999999999999999998333332221 111123344455668899998766666666677899999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHH-HHHHHHHhC-C-cEEEeccCCCCC
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVSKKE-GIDFAREYG-C-LFLECSAKTRVN 163 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~-~-~~~~~Sa~~~~~ 163 (211)
+.++|+++++.+.+.+..+|++.+++.. ....+|+|+|+||+|......-..+. .......+. + ..++|||++-.+
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 9999999999999999999999998764 23579999999999985433322222 333333333 2 579999999999
Q ss_pred HHHHHHHHHHHHHcCCCcc
Q 028292 164 VEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 164 v~~~~~~i~~~~~~~~~~~ 182 (211)
+.++|....+++.....-.
T Consensus 163 ~~e~fYyaqKaVihPt~PL 181 (625)
T KOG1707|consen 163 VSELFYYAQKAVIHPTSPL 181 (625)
T ss_pred hHhhhhhhhheeeccCccc
Confidence 9999999998887665443
No 221
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=4.9e-18 Score=135.19 Aligned_cols=147 Identities=17% Similarity=0.125 Sum_probs=100.7
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (211)
..+.++|+++|+.++|||||+++|++... .......|.+.....+.+......+.||||||++.|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 45679999999999999999999984310 011123455666666667666778999999999888
Q ss_pred cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCCcccC---HHHHHHHHHHhC
Q 028292 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVDKESERVVS---KKEGIDFAREYG 150 (211)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~ 150 (211)
..........+|++++|+|+.+....+.. . +...+. ..++|.+ +++||+|+.+..... .+++..+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e-~l~~~~----~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTR-E-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHH-H-HHHHHH----HcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 76666667788999999999874322221 1 222232 2456755 689999986533221 234555665554
Q ss_pred -----CcEEEeccCCCC
Q 028292 151 -----CLFLECSAKTRV 162 (211)
Q Consensus 151 -----~~~~~~Sa~~~~ 162 (211)
++++++||.++.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 689999999875
No 222
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.78 E-value=3e-18 Score=125.77 Aligned_cols=112 Identities=24% Similarity=0.297 Sum_probs=79.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCC------------------CCcceeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEEL------------------SPTIGVDFKIKHVAL-----GGKKMKLAIWDTAGQ 71 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~ 71 (211)
+|+++|+.++|||||+++|+....... ....+.++....+.+ ++..+.+++|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999997543111 011222222222222 355688999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
..+......++..+|++|+|+|+.+..++... . +..... ..++|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~-~-~~~~~~----~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE-R-LIRHAI----LEGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECcccC
Confidence 98887888888999999999999887665432 2 223222 2458999999999974
No 223
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=3.3e-18 Score=139.00 Aligned_cols=157 Identities=18% Similarity=0.192 Sum_probs=117.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc------cccccc-c-cC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR------TLTSSY-Y-RG 84 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~-~-~~ 84 (211)
..+|+++|.||||||||.|+|++... .....+|.|...++-.+.....+++++|+||--... ...+.+ . ..
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 45699999999999999999998775 566677777777777666666678999999943322 222233 3 35
Q ss_pred ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164 (211)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (211)
.|++|-|+|+++.+.- ....++.+ ..++|+++++|+.|..+.+.+.. +..++.+..|+|+++++|++|+|+
T Consensus 82 ~D~ivnVvDAtnLeRn---LyltlQLl-----E~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 82 PDLIVNVVDATNLERN---LYLTLQLL-----ELGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCEEEEEcccchHHHH---HHHHHHHH-----HcCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCCH
Confidence 6999999999986432 22122222 47899999999999866554433 345678889999999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 028292 165 EQCFEELVLKILDTP 179 (211)
Q Consensus 165 ~~~~~~i~~~~~~~~ 179 (211)
+++...+.+....+.
T Consensus 153 ~~l~~~i~~~~~~~~ 167 (653)
T COG0370 153 EELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHHhccccc
Confidence 999999988766555
No 224
>PRK12735 elongation factor Tu; Reviewed
Probab=99.78 E-value=9.2e-18 Score=133.55 Aligned_cols=160 Identities=15% Similarity=0.116 Sum_probs=107.3
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhC-------CC--------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSD-------TF--------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (211)
..+.++|+++|++++|||||+++|++. .+ .......|.+.......+.....++.|+||||+..|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 356799999999999999999999862 10 111123455555555666566678899999999888
Q ss_pred cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCCccc---CHHHHHHHHHHhC
Q 028292 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVDKESERVV---SKKEGIDFAREYG 150 (211)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~~ 150 (211)
.......+..+|++++|+|+.+....+. .. +...+. ..++|.+ +++||+|+.+..+. ...++..+...++
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt-~e-~l~~~~----~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQT-RE-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhH-HH-HHHHHH----HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 7666677789999999999987532221 12 222232 3567865 57999998643221 1224445555443
Q ss_pred -----CcEEEeccCCCC----------CHHHHHHHHHHHH
Q 028292 151 -----CLFLECSAKTRV----------NVEQCFEELVLKI 175 (211)
Q Consensus 151 -----~~~~~~Sa~~~~----------~v~~~~~~i~~~~ 175 (211)
++++++||.++. ++..+++.|.+.+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 679999999984 5666666666553
No 225
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.78 E-value=5.4e-18 Score=125.90 Aligned_cols=156 Identities=19% Similarity=0.206 Sum_probs=107.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeE-EEEEEEeCCCccccc----c---cccccccCc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKK-MKLAIWDTAGQERFR----T---LTSSYYRGA 85 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~D~~g~~~~~----~---~~~~~~~~~ 85 (211)
-.|.++|.||+|||||++++.+.+. ...+...+|.+...-++.... .++.+-|+||.-+-. . ..-..+..+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 3688999999999999999999875 444444444444443333222 238889999943222 1 222335678
Q ss_pred cEEEEEEECCCh---hcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCC
Q 028292 86 QGIIMVYDVTRR---DTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKT 160 (211)
Q Consensus 86 d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (211)
+.+++|+|++.. ..|+.+.. +...+..+. ...+.|.++|+||+|+++.. ...+.++.....- .++++||+.
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecc
Confidence 999999999998 77777776 444554443 25679999999999985221 1122344444443 499999999
Q ss_pred CCCHHHHHHHHHHH
Q 028292 161 RVNVEQCFEELVLK 174 (211)
Q Consensus 161 ~~~v~~~~~~i~~~ 174 (211)
+++++++++.|.+.
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999998887653
No 226
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=5.8e-18 Score=126.55 Aligned_cols=161 Identities=20% Similarity=0.160 Sum_probs=114.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--cc-------ccccccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--FR-------TLTSSYY 82 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~-------~~~~~~~ 82 (211)
....|+|.|.||||||||++.+++.+. +..+.+.++.......++....+++++||||.-+ .. +.....-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 457899999999999999999999885 6667777767777777777778899999999321 11 1111111
Q ss_pred cCccEEEEEEECCCh--hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC-CcEEEeccC
Q 028292 83 RGAQGIIMVYDVTRR--DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG-CLFLECSAK 159 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 159 (211)
+-.++++|++|.+.- .+.+.... ++..+.. ..+.|+++|+||.|......+.. +.......+ .....+++.
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~---~f~~p~v~V~nK~D~~~~e~~~~--~~~~~~~~~~~~~~~~~~~ 319 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQIS-LLEEIKE---LFKAPIVVVINKIDIADEEKLEE--IEASVLEEGGEEPLKISAT 319 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHH-HHHHHHH---hcCCCeEEEEecccccchhHHHH--HHHHHHhhccccccceeee
Confidence 335788999999753 56677666 4555554 34599999999999865544333 333344444 457889999
Q ss_pred CCCCHHHHHHHHHHHHHcCC
Q 028292 160 TRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 160 ~~~~v~~~~~~i~~~~~~~~ 179 (211)
.+.+++.....+...+.+..
T Consensus 320 ~~~~~d~~~~~v~~~a~~~~ 339 (346)
T COG1084 320 KGCGLDKLREEVRKTALEPL 339 (346)
T ss_pred ehhhHHHHHHHHHHHhhchh
Confidence 99999988888887765543
No 227
>CHL00071 tufA elongation factor Tu
Probab=99.76 E-value=2e-17 Score=132.17 Aligned_cols=149 Identities=15% Similarity=0.111 Sum_probs=101.3
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (211)
....++|+++|++++|||||+++|++... .......|.+.......+.....++.|+||||+..+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 45679999999999999999999997421 111122455555555556556678899999999887
Q ss_pred cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccC---HHHHHHHHHHhC
Q 028292 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVS---KKEGIDFAREYG 150 (211)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~ 150 (211)
.......+..+|++++|+|+.....-+. .. ....+. ..++| +++++||+|+.+..... ..++..+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~-~~~~~~----~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQT-KE-HILLAK----QVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 7666677789999999999987532221 12 222232 35678 67889999986533211 224444544433
Q ss_pred -----CcEEEeccCCCCCH
Q 028292 151 -----CLFLECSAKTRVNV 164 (211)
Q Consensus 151 -----~~~~~~Sa~~~~~v 164 (211)
++++++||.+|.++
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 163 FPGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCCcceEEEcchhhcccc
Confidence 68999999998743
No 228
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.76 E-value=2.3e-17 Score=121.42 Aligned_cols=152 Identities=16% Similarity=0.114 Sum_probs=94.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCC-----------------C-------cceeeeEEEE-------------EEEC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELS-----------------P-------TIGVDFKIKH-------------VALG 57 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~-----------------~-------~~~~~~~~~~-------------~~~~ 57 (211)
||+++|+.++|||||+.+|..+.+.... . ..|.+..... -.+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999976542100 0 0111100000 0111
Q ss_pred CeEEEEEEEeCCCccccccccccccc--CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292 58 GKKMKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER 135 (211)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 135 (211)
.....++++||||++.+.......+. .+|++++|+|+.....-.. .. +...+. ..++|+++|+||+|+.+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~-~l~~l~----~~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KE-HLGLAL----ALNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCEEEEEECccccCHH
Confidence 22457899999999888654444443 6899999999987643222 11 333333 4568999999999985432
Q ss_pred ccC--HHHHHHHHH--------------------------HhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 136 VVS--KKEGIDFAR--------------------------EYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 136 ~~~--~~~~~~~~~--------------------------~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
... ..++.++.. ...+++|.+|+.+|+|++++...|.
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 221 112222221 1124899999999999999887764
No 229
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.75 E-value=2.5e-17 Score=119.33 Aligned_cols=159 Identities=19% Similarity=0.189 Sum_probs=96.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccee---eeEEEEEEECCeEEEEEEEeCCCccccccc-----cccccc
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGV---DFKIKHVALGGKKMKLAIWDTAGQERFRTL-----TSSYYR 83 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~~~ 83 (211)
+++|+++|.+|+|||||+|.|++... .......+. +.....+... ....+.+||+||....... ....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 47999999999999999999998654 222222221 1111111111 1236899999996432221 122357
Q ss_pred CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-----------cCHHHHHHHH----HH
Q 028292 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV-----------VSKKEGIDFA----RE 148 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~----~~ 148 (211)
++|+++++.+. .|......+...+.. .+.|+++|+||+|+..... ...++..+.+ ..
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~----~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQC----MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHH----hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 78998887432 233333335555554 3689999999999843211 0111111111 12
Q ss_pred hC---CcEEEeccC--CCCCHHHHHHHHHHHHHcCCC
Q 028292 149 YG---CLFLECSAK--TRVNVEQCFEELVLKILDTPS 180 (211)
Q Consensus 149 ~~---~~~~~~Sa~--~~~~v~~~~~~i~~~~~~~~~ 180 (211)
.+ .++|.+|+. .+.++..+.+.|...+.+.+.
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 22 368999998 578999999999999886543
No 230
>COG2262 HflX GTPases [General function prediction only]
Probab=99.75 E-value=5.7e-17 Score=124.75 Aligned_cols=160 Identities=19% Similarity=0.161 Sum_probs=111.2
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc---------ccccccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER---------FRTLTSS 80 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~ 80 (211)
.....|.++|.+|+|||||+|+|++... .........+.+...+.+.+ ...+.+.||-|.-+ |.++...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE 268 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEE 268 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHH
Confidence 4667899999999999999999997665 23333333344455555554 44678889999321 2222222
Q ss_pred cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT 160 (211)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (211)
..++|.++.|+|+++|...+.+.. ....+.... ..++|+++|.||.|+..... .........-..+.+||++
T Consensus 269 -~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~-~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~ 340 (411)
T COG2262 269 -VKEADLLLHVVDASDPEILEKLEA-VEDVLAEIG-ADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKT 340 (411)
T ss_pred -hhcCCEEEEEeecCChhHHHHHHH-HHHHHHHcC-CCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEecc
Confidence 468999999999999966666555 556665554 46699999999999754433 1111222111588899999
Q ss_pred CCCHHHHHHHHHHHHHcCC
Q 028292 161 RVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 161 ~~~v~~~~~~i~~~~~~~~ 179 (211)
|.|++.+...|...+....
T Consensus 341 ~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 341 GEGLDLLRERIIELLSGLR 359 (411)
T ss_pred CcCHHHHHHHHHHHhhhcc
Confidence 9999999999999887543
No 231
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.74 E-value=3.2e-17 Score=120.11 Aligned_cols=168 Identities=19% Similarity=0.227 Sum_probs=107.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccc-----cccccccCccEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRT-----LTSSYYRGAQGI 88 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~-----~~~~~~~~~d~~ 88 (211)
||+++|+.++||||+.+.+.....+......+.+.......+ ....+.+++||+||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 799999999999999999997765444455555554444444 23456899999999865533 356678999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHh-hcCCCCCcEEEEEeCCCCCCCcc--c----CHHHHHHHHHHhC---CcEEEecc
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDL-YSTNQDCIKLLVGNKVDKESERV--V----SKKEGIDFAREYG---CLFLECSA 158 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~~~--~----~~~~~~~~~~~~~---~~~~~~Sa 158 (211)
|+|+|+.+.+..+.+.. +...+.. ....+++.+.+.++|+|+..... . ..+.+.+.....+ +.++.+|.
T Consensus 81 IyV~D~qs~~~~~~l~~-~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAY-LSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-STCHHHHHH-HHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEcccccHHHHHHH-HHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 99999996554444444 4444432 22268899999999999854321 1 1223334444555 77898888
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcccC
Q 028292 159 KTRVNVEQCFEELVLKILDTPSLLSE 184 (211)
Q Consensus 159 ~~~~~v~~~~~~i~~~~~~~~~~~~~ 184 (211)
.+ +.+-+.|..+++.+..+.....+
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP~~~~le~ 184 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIPNLSTLEN 184 (232)
T ss_dssp TS-THHHHHHHHHHHTTSTTHCCCCC
T ss_pred cC-cHHHHHHHHHHHHHcccHHHHHH
Confidence 88 68999999999988766554433
No 232
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.74 E-value=4.2e-17 Score=132.10 Aligned_cols=154 Identities=21% Similarity=0.152 Sum_probs=98.8
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC--CC------------CCC------------------cceeeeEEEEEEE
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EE------------LSP------------------TIGVDFKIKHVAL 56 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~------------~~~------------------~~~~~~~~~~~~~ 56 (211)
.....++|+++|+.++|||||+.+|+...- .. ... ..|.+.......+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 346779999999999999999999986432 10 000 1122334444444
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 028292 57 GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV 136 (211)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 136 (211)
.....++.|+||||++.|.......+..+|++++|+|+.....-..... ....... ...|+++++||+|+.....
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~--~~l~~~l---g~~~iIvvvNKiD~~~~~~ 177 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH--SFIATLL---GIKHLVVAVNKMDLVDYSE 177 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH--HHHHHHh---CCCceEEEEEeeccccchh
Confidence 5556789999999998886655556789999999999986532111111 1112221 2257899999999864322
Q ss_pred cCHHHH----HHHHHHh----CCcEEEeccCCCCCHHHH
Q 028292 137 VSKKEG----IDFAREY----GCLFLECSAKTRVNVEQC 167 (211)
Q Consensus 137 ~~~~~~----~~~~~~~----~~~~~~~Sa~~~~~v~~~ 167 (211)
...++. ..+.... ..+++++||++|+|+.++
T Consensus 178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 112222 2222332 368999999999999764
No 233
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.73 E-value=2.9e-16 Score=119.04 Aligned_cols=143 Identities=17% Similarity=0.233 Sum_probs=93.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCC-----------CCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-----
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEE-----------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR----- 75 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----- 75 (211)
-.++|+|+|.+|+|||||+|+|++..+.. ..++.........+..++..+.+.+|||||.....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 35899999999999999999999887622 23344444555566667778899999999932110
Q ss_pred ---------------------cccccccc--CccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292 76 ---------------------TLTSSYYR--GAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (211)
Q Consensus 76 ---------------------~~~~~~~~--~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (211)
..+...+. .+|+++++++.+... .-.+ .. ++..+ . ..+|+++|+||+|+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D-~~-~lk~l---~--~~v~vi~VinK~D~ 155 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD-IE-FMKRL---S--KRVNIIPVIAKADT 155 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH-HH-HHHHH---h--ccCCEEEEEECCCc
Confidence 01112233 467888888876521 1111 11 23333 2 36899999999998
Q ss_pred CCCc--ccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292 132 ESER--VVSKKEGIDFAREYGCLFLECSAKTR 161 (211)
Q Consensus 132 ~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (211)
.... ....+...+.+..+++.+|..+....
T Consensus 156 l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~~ 187 (276)
T cd01850 156 LTPEELKEFKQRIMEDIEEHNIKIYKFPEDEE 187 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceECCCCCcc
Confidence 5532 23455566778888999998776443
No 234
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=7.7e-17 Score=121.59 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=81.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC--CCC---------C----------CcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF--EEL---------S----------PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~--~~~---------~----------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (211)
-+|+++|++|+|||||+++|+...- ... . ...+.++......++...+.+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4799999999999999999985321 100 0 011334445555666677889999999998
Q ss_pred cccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
++.......++.+|++|+|+|+++..... ... +..... ..++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~-i~~~~~----~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRK-LFEVCR----LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHH-HHHHHH----hcCCCEEEEEECCccCCC
Confidence 88776777789999999999998763321 122 222222 357899999999998554
No 235
>PLN03126 Elongation factor Tu; Provisional
Probab=99.73 E-value=1.7e-16 Score=128.13 Aligned_cols=148 Identities=15% Similarity=0.096 Sum_probs=100.4
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (211)
....++|+++|++++|||||+++|++... .......|.+.......+......+.|+|+||++.|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 45679999999999999999999996211 111223444555555555555668899999999988
Q ss_pred cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHh-
Q 028292 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---SKKEGIDFAREY- 149 (211)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~- 149 (211)
.......+..+|++++|+|+.+...-+. .. +...+. ..++| +++++||+|+.+.... ..+++..+....
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e-~~~~~~----~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQT-KE-HILLAK----QVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 7777777789999999999987643222 22 222333 35677 7788999998653222 112344444443
Q ss_pred ----CCcEEEeccCCCCC
Q 028292 150 ----GCLFLECSAKTRVN 163 (211)
Q Consensus 150 ----~~~~~~~Sa~~~~~ 163 (211)
+++++++|+.++.+
T Consensus 232 ~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 232 FPGDDIPIISGSALLALE 249 (478)
T ss_pred CCcCcceEEEEEcccccc
Confidence 46899999988853
No 236
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.73 E-value=3.9e-17 Score=130.30 Aligned_cols=148 Identities=22% Similarity=0.185 Sum_probs=95.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC--CC------------------------------CCCcceeeeEEEEEEECCeEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF--EE------------------------------LSPTIGVDFKIKHVALGGKKM 61 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~--~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (211)
+||+++|+.++|||||+.+|+...- .. .....|.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999974321 00 001112334444444445566
Q ss_pred EEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH--
Q 028292 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK-- 139 (211)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-- 139 (211)
++.|+||||++.|.......+..+|++++|+|+.....-+... ....+.. ....++++++||+|+........
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~--~~~~~~~---~~~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR--HSYIASL---LGIRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH--HHHHHHH---cCCCcEEEEEEecccccchHHHHHH
Confidence 8999999999888766666788999999999998753222111 1122222 12346889999999864322111
Q ss_pred --HHHHHHHHHhC---CcEEEeccCCCCCHHH
Q 028292 140 --KEGIDFAREYG---CLFLECSAKTRVNVEQ 166 (211)
Q Consensus 140 --~~~~~~~~~~~---~~~~~~Sa~~~~~v~~ 166 (211)
++...+....+ ++++++||++|+|+.+
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 12222333333 4799999999999875
No 237
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.1e-17 Score=112.82 Aligned_cols=156 Identities=20% Similarity=0.258 Sum_probs=116.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
+.=|++++|--|+|||||++.|.......+.||...+.....+ .+..++-+|.+|+..-+..|..++..+|++|+.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 4458999999999999999999998887777776654443333 445678889999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH---HHHHHh-----------C---CcEE
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGI---DFAREY-----------G---CLFL 154 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~---~~~~~~-----------~---~~~~ 154 (211)
+|+-|.+.|.+.+..+...+.. .....+|+++.+||.|.+.+. ..++.. .+.+.. + +.+|
T Consensus 95 vda~d~er~~es~~eld~ll~~-e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf 171 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSD-ESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF 171 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhH-HHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence 9999999998887744444433 225789999999999986554 333322 111111 1 2468
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 028292 155 ECSAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 155 ~~Sa~~~~~v~~~~~~i~~~ 174 (211)
-||...+.+-.+.|.|+.+.
T Consensus 172 mcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 172 MCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEccCccceeeeehhhh
Confidence 88888888877777777654
No 238
>PLN03127 Elongation factor Tu; Provisional
Probab=99.73 E-value=2.7e-16 Score=126.36 Aligned_cols=161 Identities=17% Similarity=0.089 Sum_probs=104.4
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhC------CC---------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSD------TF---------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (211)
....++|+++|+.++|||||+++|.+. .. .......|.+.......+.....++.|+||||+..|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 446799999999999999999999732 10 111223455666666777667778999999999887
Q ss_pred cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccCH---HHHHHHHHHh-
Q 028292 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVSK---KEGIDFAREY- 149 (211)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~---~~~~~~~~~~- 149 (211)
-......+..+|++++|+|+++...-+. .. ....+. ..++| +++++||+|+.+...... .+..++....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e-~l~~~~----~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KE-HILLAR----QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HH-HHHHHH----HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence 6655556678999999999987532222 12 222232 35688 478899999864322111 1222333222
Q ss_pred ----CCcEEEeccC---CCCC-------HHHHHHHHHHHHH
Q 028292 150 ----GCLFLECSAK---TRVN-------VEQCFEELVLKIL 176 (211)
Q Consensus 150 ----~~~~~~~Sa~---~~~~-------v~~~~~~i~~~~~ 176 (211)
.++++++|+. ++.| +..+++.+.+.+.
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3678888875 4544 5666666666543
No 239
>PRK00049 elongation factor Tu; Reviewed
Probab=99.73 E-value=3e-16 Score=124.91 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=98.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR 75 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (211)
...++|+++|+.++|||||+++|++... .......|.+.......+.....++.|+||||+..|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 4679999999999999999999987311 0111234555666666665566788999999998887
Q ss_pred ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEE-EEEeCCCCCCCcccC---HHHHHHHHHHh--
Q 028292 76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKL-LVGNKVDKESERVVS---KKEGIDFAREY-- 149 (211)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~-- 149 (211)
......+..+|++++|+|+.....-.. .. +...+. ..++|++ +++||+|+....... ..++..+....
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt-~~-~~~~~~----~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQT-RE-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHH-HH-HHHHHH----HcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence 666677889999999999987532221 12 223333 3568876 579999986422211 12333343332
Q ss_pred ---CCcEEEeccCCCC
Q 028292 150 ---GCLFLECSAKTRV 162 (211)
Q Consensus 150 ---~~~~~~~Sa~~~~ 162 (211)
+++++++||+++.
T Consensus 164 ~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 164 PGDDTPIIRGSALKAL 179 (396)
T ss_pred CccCCcEEEeeccccc
Confidence 3689999999875
No 240
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.72 E-value=7.8e-17 Score=129.57 Aligned_cols=151 Identities=17% Similarity=0.145 Sum_probs=104.3
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCcceeeeEEEEEEECCe
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--E----------------------------ELSPTIGVDFKIKHVALGGK 59 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~ 59 (211)
....++|+++|+.++|||||+.+|+...- . ......|.+.......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 34679999999999999999999974211 0 11112244455555556667
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHH-------HHHHHHHHHHHhhcCCCCC-cEEEEEeCCCC
Q 028292 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFT-------NLADIWAKEIDLYSTNQDC-IKLLVGNKVDK 131 (211)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~~-p~ivv~nK~D~ 131 (211)
...++|+|+||+++|.......+..+|++|+|+|+++. .|+ .... ...... ..++ ++++++||+|+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~e-h~~~~~----~~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTRE-HALLAF----TLGVKQMICCCNKMDA 157 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHH-HHHHHH----HcCCCcEEEEEEcccC
Confidence 78899999999999998888889999999999999873 222 2222 222222 3456 46888999997
Q ss_pred CCCc------ccCHHHHHHHHHHhC-----CcEEEeccCCCCCHHH
Q 028292 132 ESER------VVSKKEGIDFAREYG-----CLFLECSAKTRVNVEQ 166 (211)
Q Consensus 132 ~~~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~ 166 (211)
.... ....+++..++...+ ++++++||.+|+|+.+
T Consensus 158 ~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 158 TTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 5211 111345556666655 5799999999999853
No 241
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.72 E-value=6.9e-17 Score=131.98 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=82.3
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCC--CCC-------------------CCCcceeeeEEEEEEECCeEEEEEEEeC
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT--FEE-------------------LSPTIGVDFKIKHVALGGKKMKLAIWDT 68 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 68 (211)
..+..+|+++|++++|||||+++|+... ... .....|.++......+....+.+++|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 3567799999999999999999997421 100 0011133344444455556678999999
Q ss_pred CCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
||+.++.......+..+|++|+|+|+++..... ... +..... ..++|+++++||+|+.
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~-l~~~~~----~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRK-LMEVCR----LRDTPIFTFINKLDRD 144 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHH-HHHHHH----hcCCCEEEEEECCccc
Confidence 999988877777889999999999998763221 222 222222 4689999999999974
No 242
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.72 E-value=2e-16 Score=116.00 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=78.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC--CCCC-------------CcceeeeE--EEEEEEC--------CeEEEEEEEeCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF--EELS-------------PTIGVDFK--IKHVALG--------GKKMKLAIWDTA 69 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~--~~~~-------------~~~~~~~~--~~~~~~~--------~~~~~~~i~D~~ 69 (211)
+|+++|+.++|||||+.+|+.... .... ...|.+.. ...+.+. +..+.++|||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999986432 0000 01111111 1122232 347889999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
|+..|.......+..+|++++|+|+.+..+.+.... +.. .. ..++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~-~~----~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQ-AL----KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHH-HH----HcCCCEEEEEECCCcc
Confidence 999999888899999999999999998765544222 222 22 3468999999999974
No 243
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.72 E-value=1.9e-16 Score=118.99 Aligned_cols=164 Identities=18% Similarity=0.152 Sum_probs=109.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-------ccccccccCcc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-------TLTSSYYRGAQ 86 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~d 86 (211)
-|.++|.||+||||||+.+.+.+. ...+|.+......-.+.+ ...-.+.+-|+||.-+-. .....++..+-
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 477899999999999999998875 222233322222223333 233357888999943221 11223456788
Q ss_pred EEEEEEECCChhc---HHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEE-EeccCCC
Q 028292 87 GIIMVYDVTRRDT---FTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFL-ECSAKTR 161 (211)
Q Consensus 87 ~~ilv~d~~~~~s---~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~Sa~~~ 161 (211)
+++.|+|++..+. .++... +...+..|. ...++|.+||+||+|+....+........+....+...+ ++||.++
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~-i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQT-IRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHH-HHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 9999999986542 444444 556666553 357899999999999755554444445555555554322 2999999
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 028292 162 VNVEQCFEELVLKILDTPS 180 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~~~~~ 180 (211)
+|++++...+.+.+.+...
T Consensus 319 ~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 319 EGLDELLRALAELLEETKA 337 (369)
T ss_pred cCHHHHHHHHHHHHHHhhh
Confidence 9999999999999887753
No 244
>PRK13351 elongation factor G; Reviewed
Probab=99.71 E-value=9.3e-17 Score=136.19 Aligned_cols=119 Identities=18% Similarity=0.220 Sum_probs=84.7
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-----CCCC------------CcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-----EELS------------PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-----~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (211)
+.+...||+|+|+.++|||||+++|+...- .... ...+.+.......+......+++|||||+
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 344678999999999999999999985321 0000 01122233323333445678999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
.++...+..+++.+|++|+|+|+++..+...... |. .+. ..++|+++++||+|+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~-~~~----~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETV-WR-QAD----RYGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HH-HHH----hcCCCEEEEEECCCCCC
Confidence 9888888889999999999999998766654332 32 222 35789999999999853
No 245
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=4.6e-17 Score=127.34 Aligned_cols=167 Identities=19% Similarity=0.186 Sum_probs=117.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc---------ccccccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR---------TLTSSYY 82 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~ 82 (211)
..++|+++|.||||||||+|.|.+.+...+.|..|++.+..+..++-.++++.+.||+|..+.. ......+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI 346 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence 4589999999999999999999999999999999999999998888888899999999965511 1123346
Q ss_pred cCccEEEEEEECCCh--hcHHHHHHHHHHHHHhhc-----CCCCCcEEEEEeCCCCCCC-cccCHHHHHHHHHHhC---C
Q 028292 83 RGAQGIIMVYDVTRR--DTFTNLADIWAKEIDLYS-----TNQDCIKLLVGNKVDKESE-RVVSKKEGIDFAREYG---C 151 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~-----~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~---~ 151 (211)
..+|++++|+|+... ++...+.. .+.....-. .....|++++.||.|+..+ ......... +....+ .
T Consensus 347 ~~advi~~vvda~~~~t~sd~~i~~-~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~-~~~~~~~~~~ 424 (531)
T KOG1191|consen 347 ERADVILLVVDAEESDTESDLKIAR-ILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVV-YPSAEGRSVF 424 (531)
T ss_pred hhcCEEEEEecccccccccchHHHH-HHHHhccceEEEeccccccceEEEechhhccCccccccCCcee-ccccccCccc
Confidence 789999999999433 33223222 222222111 1134789999999999654 221111111 111111 3
Q ss_pred c-EEEeccCCCCCHHHHHHHHHHHHHcCCC
Q 028292 152 L-FLECSAKTRVNVEQCFEELVLKILDTPS 180 (211)
Q Consensus 152 ~-~~~~Sa~~~~~v~~~~~~i~~~~~~~~~ 180 (211)
+ ..++|+++++|++++.+.+++.+.....
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 3 4559999999999999999998875433
No 246
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.71 E-value=1.9e-16 Score=119.55 Aligned_cols=114 Identities=18% Similarity=0.180 Sum_probs=80.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC--C---------------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF--E---------------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL 77 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (211)
||+++|++++|||||+++|+...- . ......|.+.......+.....++.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 689999999999999999974211 0 01122344444444444455678999999999888888
Q ss_pred ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
+...++.+|++|+|+|+.+...-.. .. +..... ..++|+++++||+|+...
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~-~~~~~~----~~~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ET-VWRQAD----RYNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HH-HHHHHH----HcCCCEEEEEECCCCCCC
Confidence 8888999999999999987643222 11 222222 467899999999998643
No 247
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=8.5e-16 Score=121.89 Aligned_cols=158 Identities=21% Similarity=0.202 Sum_probs=111.8
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEE--EEECC-eEEEEEEEeCCCcccccccccccccCccE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKH--VALGG-KKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (211)
.++.=|.++|+...|||||+-.+-....... ..-|.+.+.-. +..+. ....++|+|||||+.|..++.....-+|+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~-EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccc-cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 3556789999999999999999987776221 22233333333 33321 23578999999999999999998899999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC---------CcEEEecc
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG---------CLFLECSA 158 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~Sa 158 (211)
+|||+++++.-.-+.... +. +....++|++|++||+|..+.+ .........+++ ..++++||
T Consensus 82 aILVVa~dDGv~pQTiEA-----I~-hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA 152 (509)
T COG0532 82 AILVVAADDGVMPQTIEA-----IN-HAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSA 152 (509)
T ss_pred EEEEEEccCCcchhHHHH-----HH-HHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeec
Confidence 999999998633322221 11 1126899999999999986433 222222233333 46899999
Q ss_pred CCCCCHHHHHHHHHHHHHcC
Q 028292 159 KTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 159 ~~~~~v~~~~~~i~~~~~~~ 178 (211)
++|+|+.+++..++-...-.
T Consensus 153 ~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 153 KTGEGIDELLELILLLAEVL 172 (509)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 99999999999988776554
No 248
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.70 E-value=3.3e-16 Score=126.02 Aligned_cols=151 Identities=19% Similarity=0.131 Sum_probs=100.9
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCcceeeeEEEEEEECCeE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--E----------------------------ELSPTIGVDFKIKHVALGGKK 60 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~ 60 (211)
...++|+++|+.++|||||+.+|+...- . ......|.+.......+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 4668999999999999999999986211 0 111122445555555566677
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhc---H---HHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCC
Q 028292 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---F---TNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKES 133 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 133 (211)
..++|+|+||+.+|.......+..+|++++|+|++.... | ..... ....+. ..++| +|+++||+|...
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~e-h~~~~~----~~gi~~iiv~vNKmD~~~ 159 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTRE-HALLAF----TLGVKQMIVCINKMDDKT 159 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHH-HHHHHH----HcCCCeEEEEEEcccccc
Confidence 889999999999998888888899999999999987521 1 11222 222222 35666 678999999532
Q ss_pred --Cc----ccCHHHHHHHHHHh-----CCcEEEeccCCCCCHHH
Q 028292 134 --ER----VVSKKEGIDFAREY-----GCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 134 --~~----~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~v~~ 166 (211)
.. ....+++..+.... +++++++|+.+|+|+.+
T Consensus 160 ~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 160 VNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11 11122333333333 36799999999999864
No 249
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.70 E-value=1.1e-15 Score=110.76 Aligned_cols=162 Identities=12% Similarity=0.122 Sum_probs=99.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCC---CcceeeeEEEEEEECCeEEEEEEEeCCCcccccc-----------ccc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS---PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-----------LTS 79 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~ 79 (211)
++|+++|.+|+|||||+|.+++.+..... +....+.......+. ...+.++||||...... .+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--CeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987652211 111222222333333 34689999999443211 112
Q ss_pred ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcccC------HHHHHHHHHHhCCc
Q 028292 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKESERVVS------KKEGIDFAREYGCL 152 (211)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~~ 152 (211)
....+.|++++|+++.+. +-.+. . .+..+... ....-.++++++|+.|......+. ....+.+....+-.
T Consensus 79 ~~~~g~~~illVi~~~~~-t~~d~-~-~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r 155 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRF-TEEEE-Q-AVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR 155 (196)
T ss_pred hcCCCCEEEEEEEECCCc-CHHHH-H-HHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe
Confidence 234678999999999872 22221 1 23333222 212235788999999975433211 13444555565655
Q ss_pred EEEec-----cCCCCCHHHHHHHHHHHHHcCCC
Q 028292 153 FLECS-----AKTRVNVEQCFEELVLKILDTPS 180 (211)
Q Consensus 153 ~~~~S-----a~~~~~v~~~~~~i~~~~~~~~~ 180 (211)
++..+ +..+.+++++++.|.+.+.++..
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~ 188 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVKENGG 188 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 54554 45677999999999999987433
No 250
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.70 E-value=2.8e-16 Score=119.23 Aligned_cols=152 Identities=21% Similarity=0.243 Sum_probs=94.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCC--C---CC--Cc----------ceeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFE--E---LS--PT----------IGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL 77 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~--~---~~--~~----------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~ 77 (211)
+|+++|++|+|||||+++|+..... . .. .+ .+.+.......+....+.+++|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999853210 0 00 00 011222222233334567899999999888777
Q ss_pred ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcE--EE
Q 028292 78 TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLF--LE 155 (211)
Q Consensus 78 ~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~ 155 (211)
+...+..+|++++|+|+++......... |. .+. ..++|+++++||+|...... .+....+...++.++ +.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~-~~~----~~~~p~iivvNK~D~~~~~~--~~~~~~l~~~~~~~~~~~~ 152 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKL-WE-FAD----EAGIPRIIFINKMDRERADF--DKTLAALQEAFGRPVVPLQ 152 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHH-HH-HHH----HcCCCEEEEEECCccCCCCH--HHHHHHHHHHhCCCeEEEE
Confidence 8888899999999999998755433222 22 222 35789999999999865421 222233334445443 44
Q ss_pred eccCCCCCHHHHHHHHHHH
Q 028292 156 CSAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 156 ~Sa~~~~~v~~~~~~i~~~ 174 (211)
++..++.++..+.+.+...
T Consensus 153 ip~~~~~~~~~~vd~~~~~ 171 (268)
T cd04170 153 LPIGEGDDFKGVVDLLTEK 171 (268)
T ss_pred ecccCCCceeEEEEcccCE
Confidence 4566666655554444433
No 251
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.69 E-value=1.6e-15 Score=113.37 Aligned_cols=158 Identities=23% Similarity=0.121 Sum_probs=105.5
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------cccccccccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------FRTLTSSYYR 83 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~ 83 (211)
+.--+|+++|+|++|||||++.|++.+. +......++.....-.....+.++++.|+||.-. .....-...+
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 3557899999999999999999999875 3334444444444444444556788899998322 1234556789
Q ss_pred CccEEEEEEECCChhc-HHHHHHHH----------------------------------------HHHHHhhc-------
Q 028292 84 GAQGIIMVYDVTRRDT-FTNLADIW----------------------------------------AKEIDLYS------- 115 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s-~~~~~~~~----------------------------------------~~~~~~~~------- 115 (211)
+||.+++|+|+....+ .+.+...+ ...+..+.
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999986544 22222111 11111111
Q ss_pred ----------------CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 116 ----------------TNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 116 ----------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
...-+|.++|.||.|+.. .++...+.+.. .++.+||+.+.|++++.+.|.+.+.
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 112478899999999844 23333333332 8899999999999999999988874
No 252
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.69 E-value=2.1e-16 Score=132.75 Aligned_cols=153 Identities=21% Similarity=0.156 Sum_probs=97.5
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCC--------------CC------------------cceeeeEEEEEEE
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEEL--------------SP------------------TIGVDFKIKHVAL 56 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~--------------~~------------------~~~~~~~~~~~~~ 56 (211)
.....++|+++|++++|||||+++|+...-... .. ..|.+.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 344568999999999999999999996432111 00 0122333333344
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 028292 57 GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV 136 (211)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 136 (211)
.....++.|+||||++.+.......+..+|++++|+|+.....-+... ....+... ...+++|++||+|+.....
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e--~~~~~~~~---~~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRR--HSFIASLL---GIRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHH--HHHHHHHh---CCCeEEEEEEecccccchh
Confidence 445567889999999887665556688999999999997653221111 11222221 2367889999999854221
Q ss_pred cCH----HHHHHHHHHhC---CcEEEeccCCCCCHHH
Q 028292 137 VSK----KEGIDFAREYG---CLFLECSAKTRVNVEQ 166 (211)
Q Consensus 137 ~~~----~~~~~~~~~~~---~~~~~~Sa~~~~~v~~ 166 (211)
... .+...+....+ ++++++||++|.|+.+
T Consensus 175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 111 12223334444 4699999999999874
No 253
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=3.2e-16 Score=104.11 Aligned_cols=105 Identities=25% Similarity=0.259 Sum_probs=68.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCcccc---------ccccccccc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQERF---------RTLTSSYYR 83 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~ 83 (211)
+|+|+|.+|+|||||+|+|++..........+++.. ...+.+++.. +.++||||...- .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 699999999999999999998654333333333322 2444556655 468999994321 111222348
Q ss_pred CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (211)
.+|++++|+|.+++.. +.... +...+ ..++|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~-~~~~l-----~~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKN-ILREL-----KNKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHH-HHHHH-----HTTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHH-HHHHH-----hcCCCEEEEEcC
Confidence 8999999999887422 12222 33333 278999999998
No 254
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=1.8e-15 Score=119.78 Aligned_cols=168 Identities=20% Similarity=0.216 Sum_probs=122.4
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC--C------------CCCCcceeeeEEEEE---EECCeEEEEEEEeCCCc
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--E------------ELSPTIGVDFKIKHV---ALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~------------~~~~~~~~~~~~~~~---~~~~~~~~~~i~D~~g~ 71 (211)
+.++.-|+.|+-+...|||||.-+|+...- + ......|.++....- ..++..+.++++||||+
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 446777999999999999999999985321 1 111223433333322 22356699999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH-HHHHHHHHhC
Q 028292 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKK-EGIDFAREYG 150 (211)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~ 150 (211)
.+|.......+.-++++|+|+|++..-.-+.+.. ++..+ ..+..+|.|+||+|++..+.-..+ +..+++...+
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~an-f~lAf-----e~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~ 209 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVAN-FYLAF-----EAGLAIIPVLNKIDLPSADPERVENQLFELFDIPP 209 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHH-HHHHH-----HcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999877777666 33333 256778999999999776543322 2333333334
Q ss_pred CcEEEeccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028292 151 CLFLECSAKTRVNVEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 151 ~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~ 182 (211)
.+++.+||++|.|+++++..|++.+.......
T Consensus 210 ~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~ 241 (650)
T KOG0462|consen 210 AEVIYVSAKTGLNVEELLEAIIRRVPPPKGIR 241 (650)
T ss_pred cceEEEEeccCccHHHHHHHHHhhCCCCCCCC
Confidence 57899999999999999999999887554433
No 255
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.67 E-value=1.8e-15 Score=116.37 Aligned_cols=163 Identities=18% Similarity=0.241 Sum_probs=98.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCC--C-----CCCcceeeeEEEE---------------EEECC-eEEEEEEEeCCCc-
Q 028292 16 LLLIGDSGVGKSTLLLSFTSDTFE--E-----LSPTIGVDFKIKH---------------VALGG-KKMKLAIWDTAGQ- 71 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~~--~-----~~~~~~~~~~~~~---------------~~~~~-~~~~~~i~D~~g~- 71 (211)
|+++|.++||||||+++|++.... . ..|+.|..+.... ..+++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987651 1 1222222211100 00122 3467999999996
Q ss_pred ---ccccccccc---cccCccEEEEEEECCC---------------h-hcHHHHHHHHHH--------------------
Q 028292 72 ---ERFRTLTSS---YYRGAQGIIMVYDVTR---------------R-DTFTNLADIWAK-------------------- 109 (211)
Q Consensus 72 ---~~~~~~~~~---~~~~~d~~ilv~d~~~---------------~-~s~~~~~~~~~~-------------------- 109 (211)
+....+-.. .++++|++++|+|++. | +.++.+...+..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333333 4899999999999973 1 111111110000
Q ss_pred ------------------------HHHh--------------------hcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 028292 110 ------------------------EIDL--------------------YSTNQDCIKLLVGNKVDKESERVVSKKEGIDF 145 (211)
Q Consensus 110 ------------------------~~~~--------------------~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 145 (211)
.+.. ......+|+++|+||.|+...... ...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~----~~~l 236 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN----ISKL 236 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH----HHHH
Confidence 0000 001245799999999997433221 1122
Q ss_pred HHHh-CCcEEEeccCCCCCHHHHHH-HHHHHHHcCCCcc
Q 028292 146 AREY-GCLFLECSAKTRVNVEQCFE-ELVLKILDTPSLL 182 (211)
Q Consensus 146 ~~~~-~~~~~~~Sa~~~~~v~~~~~-~i~~~~~~~~~~~ 182 (211)
.... ...++.+||+.+.++.++.+ .+.+.+.+.....
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~ 275 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFE 275 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCce
Confidence 2233 45799999999999999998 6999887765444
No 256
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.67 E-value=1.4e-16 Score=111.94 Aligned_cols=119 Identities=23% Similarity=0.294 Sum_probs=76.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEE-CCeEEEEEEEeCCCcccccccccc---cccCccEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVAL-GGKKMKLAIWDTAGQERFRTLTSS---YYRGAQGI 88 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~d~~ 88 (211)
.-.|+++|+.|+|||+|...|..+....+..+.. ....+.+ ......+.++|+||+.+.+..... +...+.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e---~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSME---NNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SS---EEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeecccc---CCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 4579999999999999999999986643333331 1112222 223346888999999988764444 37889999
Q ss_pred EEEEECCC-hhcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCC
Q 028292 89 IMVYDVTR-RDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 89 ilv~d~~~-~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~ 134 (211)
|||+|.+. ......+.++++..+.... ....+|++|++||+|+...
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 99999974 4566777776666665333 3567999999999998543
No 257
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=4.3e-15 Score=117.72 Aligned_cols=159 Identities=17% Similarity=0.122 Sum_probs=112.7
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceee--eEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
....++.-|-++|+...|||||+-.|-+...... ..-|.+ +.-..+... .+-.++|.||||+..|..|+....+-+
T Consensus 148 ~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~-E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vt 225 (683)
T KOG1145|consen 148 LLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAG-EAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVT 225 (683)
T ss_pred hcCCCCCeEEEeecccCChhhHHHHHhhCceehh-hcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccc
Confidence 3445778899999999999999999988766211 112222 222233333 235789999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC---------CcEEEe
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG---------CLFLEC 156 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 156 (211)
|++|+|+.+.|.-.-+.. +.+ .+....++|+++++||+|.++.. .+.+.+....++ +.++++
T Consensus 226 DIvVLVVAadDGVmpQT~-----EaI-khAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145|consen 226 DIVVLVVAADDGVMPQTL-----EAI-KHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred cEEEEEEEccCCccHhHH-----HHH-HHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEe
Confidence 999999999986332222 112 22236899999999999976543 333333333333 468999
Q ss_pred ccCCCCCHHHHHHHHHHHHHc
Q 028292 157 SAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 157 Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
||++|+|++.+.+.++-.+.-
T Consensus 297 SAl~g~nl~~L~eaill~Ae~ 317 (683)
T KOG1145|consen 297 SALTGENLDLLEEAILLLAEV 317 (683)
T ss_pred ecccCCChHHHHHHHHHHHHH
Confidence 999999999999988776543
No 258
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.66 E-value=4.2e-15 Score=111.07 Aligned_cols=165 Identities=19% Similarity=0.268 Sum_probs=122.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEEC--CeEEEEEEEeCCCcccccccccccccCc----cE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALG--GKKMKLAIWDTAGQERFRTLTSSYYRGA----QG 87 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~----d~ 87 (211)
-+|+|+|+.++||||||.+|.+.+ .+.+..|.++....+.-+ +...++.+|-+.|+.-...+....+... -.
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 479999999999999999999876 445555555655555432 3336788999999776666666655443 47
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhhc----------------------------------------------------
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLYS---------------------------------------------------- 115 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~---------------------------------------------------- 115 (211)
+|++.|+++|..+-+....|...+.++.
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 7889999999665544444766665443
Q ss_pred --------CCCCCcEEEEEeCCCCC----CCc-------ccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 116 --------TNQDCIKLLVGNKVDKE----SER-------VVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 116 --------~~~~~p~ivv~nK~D~~----~~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
.+.++|++||.+|||.. ... ......++.|+..+|...+++|++...|++-+..+|.++.+
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 33579999999999972 111 22344577899999999999999999999999999999998
Q ss_pred cCCC
Q 028292 177 DTPS 180 (211)
Q Consensus 177 ~~~~ 180 (211)
...-
T Consensus 291 G~~f 294 (473)
T KOG3905|consen 291 GFPF 294 (473)
T ss_pred Cccc
Confidence 7544
No 259
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=6.3e-16 Score=113.21 Aligned_cols=164 Identities=18% Similarity=0.245 Sum_probs=107.6
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcc-eeeeEEEE-EEECCeEEEEEEEeCCCcc-------cccccc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTI-GVDFKIKH-VALGGKKMKLAIWDTAGQE-------RFRTLT 78 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~i~D~~g~~-------~~~~~~ 78 (211)
.....+++|+++|.+|+|||||||+|+.+...+..... +.+..... ..+++ -.+.|||+||-. ++++..
T Consensus 34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~ 111 (296)
T COG3596 34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLY 111 (296)
T ss_pred hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHH
Confidence 34567899999999999999999999976653333221 22222111 12233 358999999933 366778
Q ss_pred cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-------ccCHHHHH--------
Q 028292 79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER-------VVSKKEGI-------- 143 (211)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------~~~~~~~~-------- 143 (211)
..++...|.++++.+..|+.-- +...+++.+... ..+.++++++|.+|...+- ........
T Consensus 112 ~d~l~~~DLvL~l~~~~draL~--~d~~f~~dVi~~--~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~ 187 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRALG--TDEDFLRDVIIL--GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAE 187 (296)
T ss_pred HHHhhhccEEEEeccCCCcccc--CCHHHHHHHHHh--ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHH
Confidence 8889999999999999988422 111133333222 2458999999999974431 11111111
Q ss_pred ---HHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292 144 ---DFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 144 ---~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
++++. -.|++..+...+.|++.+...++..+...
T Consensus 188 ~~~~~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 188 ALGRLFQE-VKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHhh-cCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 11111 23788899999999999999999988743
No 260
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.65 E-value=3.2e-16 Score=128.13 Aligned_cols=120 Identities=17% Similarity=0.194 Sum_probs=84.7
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCC--CCC-------------------CCCcceeeeEEEEEEECCeEEEEEEEe
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDT--FEE-------------------LSPTIGVDFKIKHVALGGKKMKLAIWD 67 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D 67 (211)
+..+..+|+|+|++++|||||+++|+... ... .....|.++......++...+.+++||
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 34567899999999999999999996421 110 011223445555556666778899999
Q ss_pred CCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
|||+..+.......+..+|++|+|+|+++...- .... +..... ..++|+++++||+|+...
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~-l~~~~~----~~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVET-RTRK-LMEVTR----LRDTPIFTFMNKLDRDIR 147 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCCH-HHHH-HHHHHH----hcCCCEEEEEECccccCC
Confidence 999988877667778999999999999875211 1122 333332 367899999999998543
No 261
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.65 E-value=7e-15 Score=116.35 Aligned_cols=65 Identities=12% Similarity=0.045 Sum_probs=47.0
Q ss_pred CCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH-HHHHHHHHHHcCCCcccCCC
Q 028292 118 QDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ-CFEELVLKILDTPSLLSEGS 186 (211)
Q Consensus 118 ~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~-~~~~i~~~~~~~~~~~~~~~ 186 (211)
..+|+++|+||.|...... ......++ ....++.+||+.+.++.+ +.+.+.+.+.+....++.+.
T Consensus 216 t~KPvI~VlNK~D~~~~~~-~l~~i~~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ 281 (396)
T PRK09602 216 ISKPMVIAANKADLPPAEE-NIERLKEE---KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGE 281 (396)
T ss_pred cCCCEEEEEEchhcccchH-HHHHHHhc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCcccc
Confidence 4589999999999743221 11222222 345799999999999999 88999998888877776654
No 262
>PRK12739 elongation factor G; Reviewed
Probab=99.65 E-value=5.1e-15 Score=125.46 Aligned_cols=118 Identities=17% Similarity=0.154 Sum_probs=83.8
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-----CCCC------------CcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-----EELS------------PTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-----~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (211)
.++..+|+++|++++|||||+++|+...- .... ...|.+.......+.....+++|+||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 44678999999999999999999975311 0011 133444444444444456789999999998
Q ss_pred cccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
.+...+...+..+|++|+|+|+.+...-+.. . +...+. ..++|+++++||+|+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~-i~~~~~----~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-T-VWRQAD----KYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECCCCCC
Confidence 8877888889999999999999876433222 1 222232 46789999999999853
No 263
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=2.4e-15 Score=115.86 Aligned_cols=156 Identities=19% Similarity=0.150 Sum_probs=106.1
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC------------------------------CCCCCcceeeeEEEEEEECCeE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF------------------------------EELSPTIGVDFKIKHVALGGKK 60 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 60 (211)
...++++++|+..+|||||+-+|+...- .......|.++......++...
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 4568999999999999999999985311 0112334566777777777788
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChh---cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 028292 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 137 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 137 (211)
+.++|+|+||+..|-...-....++|++|+|+|+++.+ .|...-......+.... ..-..+||++||+|..+-++-
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t-lGi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART-LGIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh-cCCceEEEEEEcccccccCHH
Confidence 89999999999998888888889999999999998873 11111111111111222 234557888999999763333
Q ss_pred CHHHHH----HHHHHhC-----CcEEEeccCCCCCHHHH
Q 028292 138 SKKEGI----DFAREYG-----CLFLECSAKTRVNVEQC 167 (211)
Q Consensus 138 ~~~~~~----~~~~~~~-----~~~~~~Sa~~~~~v~~~ 167 (211)
..+++. .+....+ ++|+++|+..|.|+.+.
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 333322 3333333 56999999999998654
No 264
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.64 E-value=4e-15 Score=119.54 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=101.9
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCC------C--cceeeeEE----------EEE-EEC--------------
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELS------P--TIGVDFKI----------KHV-ALG-------------- 57 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------~--~~~~~~~~----------~~~-~~~-------------- 57 (211)
...++|.++|+...|||||+.+|++....... - ..|..... ..+ ...
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 45689999999999999999999964321110 0 11111000 000 000
Q ss_pred --CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 58 --GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 58 --~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
.....+.|+|+||++.|.......+..+|++++|+|+... ...+.. + .+..... ..-.++++++||+|+.+.
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-e-hl~i~~~---lgi~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-E-HLAAVEI---MKLKHIIILQNKIDLVKE 186 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-H-HHHHHHH---cCCCcEEEEEecccccCH
Confidence 0023689999999998877777778899999999999874 222221 2 2222222 123568999999998643
Q ss_pred cccC--HHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 135 RVVS--KKEGIDFARE---YGCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 135 ~~~~--~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
.... .++..++... .+.+++++||++|.|++.+++.|.+.+.
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 2211 2233333322 3568999999999999999998887554
No 265
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.64 E-value=1.7e-14 Score=115.78 Aligned_cols=168 Identities=17% Similarity=0.258 Sum_probs=121.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEEC--CeEEEEEEEeCCCcccccccccccccC----c
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALG--GKKMKLAIWDTAGQERFRTLTSSYYRG----A 85 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~----~ 85 (211)
..-+|+|+|..++||||||.+|.+.+ ...++.+.+|....+.-+ +...++.+|.+.|...+..+....+.. -
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 34689999999999999999987644 445566666666655432 223578999999877777776665543 2
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhc--------------------------------------------------
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYS-------------------------------------------------- 115 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-------------------------------------------------- 115 (211)
-.+|||+|.+.|..+.+-...|...++.+.
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 578999999998766533333444433221
Q ss_pred -----------CCCCCcEEEEEeCCCCCC----C-------cccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 028292 116 -----------TNQDCIKLLVGNKVDKES----E-------RVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVL 173 (211)
Q Consensus 116 -----------~~~~~p~ivv~nK~D~~~----~-------~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 173 (211)
.+-++|++||++|+|... . .......++.++..+|+.++++|++...+++.++.+|.+
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 112589999999999622 1 123344577888899999999999999999999999999
Q ss_pred HHHcCCCc
Q 028292 174 KILDTPSL 181 (211)
Q Consensus 174 ~~~~~~~~ 181 (211)
+++.....
T Consensus 262 ~l~~~~f~ 269 (472)
T PF05783_consen 262 RLYGFPFK 269 (472)
T ss_pred HhccCCCC
Confidence 99876654
No 266
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.63 E-value=4.5e-15 Score=125.82 Aligned_cols=121 Identities=17% Similarity=0.147 Sum_probs=86.5
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-----CCCC------------CcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-----EELS------------PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-----~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (211)
..++..||+++|++++|||||+++|+...- .... ...|.+.......+.....++++|||||+
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~ 85 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGH 85 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCC
Confidence 344667999999999999999999975321 0011 12344455445555555678999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER 135 (211)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 135 (211)
..+...+...+..+|++|+|+|+.+....+... +...+. ..++|+++++||+|+....
T Consensus 86 ~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~--~~~~~~----~~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 86 VDFTVEVERSLRVLDGAVAVLDAVGGVQPQSET--VWRQAN----RYEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred cchhHHHHHHHHHhCEEEEEEeCCCCCChhHHH--HHHHHH----HcCCCEEEEEECCCCCCCC
Confidence 888777888899999999999999865544322 222232 3578999999999986543
No 267
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.61 E-value=2e-15 Score=110.27 Aligned_cols=178 Identities=15% Similarity=0.180 Sum_probs=104.7
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcc-eeeeEEEE------EEE------------------------
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTI-GVDFKIKH------VAL------------------------ 56 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~-~~~~~~~~------~~~------------------------ 56 (211)
-..+++-|+|+|..|+|||||++||...-.. ...|.. ..+..+.. +.+
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhh
Confidence 4457789999999999999999999753221 110000 00000000 000
Q ss_pred -----------------CCeEEEEEEEeCCCcccc------ccccccccc--CccEEEEEEECC---ChhcHHHHHHHHH
Q 028292 57 -----------------GGKKMKLAIWDTAGQERF------RTLTSSYYR--GAQGIIMVYDVT---RRDTFTNLADIWA 108 (211)
Q Consensus 57 -----------------~~~~~~~~i~D~~g~~~~------~~~~~~~~~--~~d~~ilv~d~~---~~~s~~~~~~~~~ 108 (211)
......+.++||||+-+. ..++...+. .--++++++|.. ++.+|-+..-+.-
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAc 174 (366)
T KOG1532|consen 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYAC 174 (366)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHH
Confidence 122345789999996542 122222222 234677778764 4566765544333
Q ss_pred HHHHhhcCCCCCcEEEEEeCCCCCCCccc--------CHHHHHHH---------HHH---------hCCcEEEeccCCCC
Q 028292 109 KEIDLYSTNQDCIKLLVGNKVDKESERVV--------SKKEGIDF---------ARE---------YGCLFLECSAKTRV 162 (211)
Q Consensus 109 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--------~~~~~~~~---------~~~---------~~~~~~~~Sa~~~~ 162 (211)
.++. +...|+|++.||+|+....-. ..+++.+. .+. .++..+-+|+.+|+
T Consensus 175 Sily----ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~ 250 (366)
T KOG1532|consen 175 SILY----KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE 250 (366)
T ss_pred HHHH----hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC
Confidence 3333 578999999999998543110 01111110 000 14678999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcccCCCCCcc
Q 028292 163 NVEQCFEELVLKILDTPSLLSEGSSGVK 190 (211)
Q Consensus 163 ~v~~~~~~i~~~~~~~~~~~~~~~~~~~ 190 (211)
|.+++|..+.+.+-+....+.+...+.+
T Consensus 251 G~ddf~~av~~~vdEy~~~ykp~~Ek~k 278 (366)
T KOG1532|consen 251 GFDDFFTAVDESVDEYEEEYKPEYEKKK 278 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999998877666655444433
No 268
>PRK09866 hypothetical protein; Provisional
Probab=99.59 E-value=1e-13 Score=113.03 Aligned_cols=109 Identities=15% Similarity=0.114 Sum_probs=72.6
Q ss_pred EEEEEEeCCCcccc-----cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292 61 MKLAIWDTAGQERF-----RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER 135 (211)
Q Consensus 61 ~~~~i~D~~g~~~~-----~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 135 (211)
.++.|+||||-... .......+..+|++++|+|.+...+..+. . +...+.... ...|+++|+||+|+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-e-Ilk~Lkk~~--K~~PVILVVNKIDl~dre 305 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-E-VREAILAVG--QSVPLYVLVNKFDQQDRN 305 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-H-HHHHHHhcC--CCCCEEEEEEcccCCCcc
Confidence 35789999995432 22334468899999999999875443331 1 334443321 236999999999985433
Q ss_pred ccCHHHHHHHHHH----hC---CcEEEeccCCCCCHHHHHHHHHH
Q 028292 136 VVSKKEGIDFARE----YG---CLFLECSAKTRVNVEQCFEELVL 173 (211)
Q Consensus 136 ~~~~~~~~~~~~~----~~---~~~~~~Sa~~~~~v~~~~~~i~~ 173 (211)
....+.+..+... .+ ..+|++||++|.|++++++.|..
T Consensus 306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 3234444444322 22 26899999999999999998877
No 269
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.58 E-value=6.3e-14 Score=109.62 Aligned_cols=163 Identities=21% Similarity=0.223 Sum_probs=117.5
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC--------------CCCCCcceeeeEEE--EEEE---CCeEEEEEEEeCC
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--------------EELSPTIGVDFKIK--HVAL---GGKKMKLAIWDTA 69 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~--------------~~~~~~~~~~~~~~--~~~~---~~~~~~~~i~D~~ 69 (211)
+.++.-|..++-+-..|||||.-|++.... .......|.+.... .+.+ +++.|.++++|||
T Consensus 5 ~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTP 84 (603)
T COG0481 5 PQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTP 84 (603)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCC
Confidence 345566888999999999999999985321 01112223333322 2222 5688999999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh
Q 028292 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY 149 (211)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 149 (211)
|+-+|.......+..+.++++|+|++..-.-+.+.+ .+..+ ..+.-++-|+||.|++..... +-..+...-.
T Consensus 85 GHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN-~YlAl-----e~~LeIiPViNKIDLP~Adpe--rvk~eIe~~i 156 (603)
T COG0481 85 GHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLAL-----ENNLEIIPVLNKIDLPAADPE--RVKQEIEDII 156 (603)
T ss_pred CccceEEEehhhHhhCCCcEEEEECccchHHHHHHH-HHHHH-----HcCcEEEEeeecccCCCCCHH--HHHHHHHHHh
Confidence 999999888888889999999999998866666666 33333 256678999999999765532 2233344445
Q ss_pred CC---cEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292 150 GC---LFLECSAKTRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 150 ~~---~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 179 (211)
|+ ..+.+||++|.||+++++.|++.+....
T Consensus 157 Gid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 157 GIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred CCCcchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 55 4788999999999999999999876544
No 270
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.57 E-value=7.3e-15 Score=115.35 Aligned_cols=163 Identities=17% Similarity=0.123 Sum_probs=116.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc----cc-----cccccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF----RT-----LTSSYY 82 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~-----~~~~~~ 82 (211)
+.-.++|+|.|+||||||+|.+..... +..|...++......+++.....++++||||.-+. .. .+....
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA 245 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA 245 (620)
T ss_pred CcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence 556789999999999999999998875 55566666666666666777788999999993221 11 111122
Q ss_pred cCccEEEEEEECCC--hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH--HHHHHHH-hCCcEEEec
Q 028292 83 RGAQGIIMVYDVTR--RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKE--GIDFARE-YGCLFLECS 157 (211)
Q Consensus 83 ~~~d~~ilv~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~--~~~~~~~-~~~~~~~~S 157 (211)
+--.+++|+.|++. ..|...... ++..+...- .++|.|+|+||+|+.....+..+. ..+...+ -+++++++|
T Consensus 246 HLraaVLYfmDLSe~CGySva~Qvk-LfhsIKpLF--aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 246 HLRSAVLYFMDLSEMCGYSVAAQVK-LYHSIKPLF--ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HhhhhheeeeechhhhCCCHHHHHH-HHHHhHHHh--cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 23367899999975 356666555 455555444 689999999999997776666543 3333333 448999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcC
Q 028292 158 AKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 158 a~~~~~v~~~~~~i~~~~~~~ 178 (211)
+.+.+||.++-+...+.++..
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred ccchhceeeHHHHHHHHHHHH
Confidence 999999999888888887654
No 271
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3e-14 Score=100.42 Aligned_cols=156 Identities=22% Similarity=0.273 Sum_probs=101.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc---CccEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR---GAQGIIM 90 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~d~~il 90 (211)
-.|+++|+.++|||+|.-.|..+......++. +.....+.+... .++++|.||+.+.+.....++. .+-++|+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi--epn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI--EPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeee--ccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 46999999999999999999988553222222 222333333333 3788999999988876666666 7899999
Q ss_pred EEECCC-hhcHHHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcc--cCHH----HHH-------------------
Q 028292 91 VYDVTR-RDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKESERV--VSKK----EGI------------------- 143 (211)
Q Consensus 91 v~d~~~-~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~--~~~~----~~~------------------- 143 (211)
|+|... .....++.++++..+..- .....+|++++.||.|+.-... .... |+.
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 999754 334455666555555433 1356789999999999832211 1100 000
Q ss_pred ---------H--HHH--HhCCcEEEeccCCCCCHHHHHHHHHHH
Q 028292 144 ---------D--FAR--EYGCLFLECSAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 144 ---------~--~~~--~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 174 (211)
. |.+ +..+.|.++|++++ +++++-+||.+.
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0 111 12356889999998 899999998765
No 272
>PRK00007 elongation factor G; Reviewed
Probab=99.57 E-value=5.7e-14 Score=119.09 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=84.4
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhC--CCC---CCC------------CcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSD--TFE---ELS------------PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~---~~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (211)
..++..||+++|++++|||||+++|+.. ... ... ...|.+.......+......++++||||+
T Consensus 6 ~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~ 85 (693)
T PRK00007 6 PLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGH 85 (693)
T ss_pred cccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCc
Confidence 3456789999999999999999999742 110 011 23344455444444445678999999998
Q ss_pred ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER 135 (211)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 135 (211)
..+.......+..+|++|+|+|+......+... ....+. ..++|+++++||+|+....
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~--~~~~~~----~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET--VWRQAD----KYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH--HHHHHH----HcCCCEEEEEECCCCCCCC
Confidence 877766677788899999999988764443322 222232 4568999999999986543
No 273
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.56 E-value=7.5e-14 Score=105.73 Aligned_cols=126 Identities=16% Similarity=0.145 Sum_probs=74.1
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-------ccccc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-------TSSYY 82 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~ 82 (211)
..+.++|+|+|.+|+||||++|++++..........+.+...........+..+.+|||||..+.... ...++
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 35789999999999999999999998775333232222222222222223467999999996543211 11111
Q ss_pred --cCccEEEEEEECCCh--hcH-HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 028292 83 --RGAQGIIMVYDVTRR--DTF-TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS 138 (211)
Q Consensus 83 --~~~d~~ilv~d~~~~--~s~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 138 (211)
...|++++|.+++.. ... ..+...+...+.. .--.+.||++|++|..++...+
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~---~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK---DIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh---hhhccEEEEEECCccCCCCCCC
Confidence 258999999665432 212 2222223332222 2335689999999986554444
No 274
>PRK12740 elongation factor G; Reviewed
Probab=99.55 E-value=3.6e-14 Score=120.29 Aligned_cols=108 Identities=20% Similarity=0.260 Sum_probs=75.1
Q ss_pred EcCCCCcHHHHHHHHhhCCCC--C---CC------------CcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccc
Q 028292 19 IGDSGVGKSTLLLSFTSDTFE--E---LS------------PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSY 81 (211)
Q Consensus 19 ~G~~~~GKstli~~l~~~~~~--~---~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 81 (211)
+|++++|||||+++|+...-. . .. ...|.+.......+....+.+++|||||+..+...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999653210 0 00 012223333333444455789999999998887777888
Q ss_pred ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
+..+|++++|+|++.......... | ..+. ..++|+++++||+|+.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~-~-~~~~----~~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETV-W-RQAE----KYGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHH-H-HHHH----HcCCCEEEEEECCCCC
Confidence 899999999999998766544322 2 2222 3578999999999974
No 275
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.55 E-value=2.4e-14 Score=92.39 Aligned_cols=136 Identities=22% Similarity=0.160 Sum_probs=95.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc----cccccCccEEEE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT----SSYYRGAQGIIM 90 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----~~~~~~~d~~il 90 (211)
||.++|..|+|||||.++|.+... .+..+...++ ... -.+||||.-.....| ......+|++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~-lykKTQAve~-------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT-LYKKTQAVEF-------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh-hhcccceeec-------cCc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 789999999999999999998764 2322322221 111 135999943333333 334578999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCHHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~~~~ 169 (211)
|-.++++++.-.. .+.. -...|+|-|++|.|+.+. .......+|..+-|. ++|++|+.++.|+++++.
T Consensus 71 v~~and~~s~f~p------~f~~---~~~k~vIgvVTK~DLaed--~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 71 VHAANDPESRFPP------GFLD---IGVKKVIGVVTKADLAED--ADISLVKRWLREAGAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred eecccCccccCCc------cccc---ccccceEEEEecccccch--HhHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence 9999998653221 1111 345668999999999763 345566778888886 899999999999999998
Q ss_pred HHHH
Q 028292 170 ELVL 173 (211)
Q Consensus 170 ~i~~ 173 (211)
.|..
T Consensus 140 ~L~~ 143 (148)
T COG4917 140 YLAS 143 (148)
T ss_pred HHHh
Confidence 8754
No 276
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.55 E-value=8.4e-14 Score=103.82 Aligned_cols=125 Identities=18% Similarity=0.264 Sum_probs=74.1
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc--c-c-------
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR--T-L------- 77 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~-~------- 77 (211)
++....++|+|+|.+|+|||||+|+|++..........+.+..............+.+|||||..... . .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 45567899999999999999999999998763333332223333333322334578999999955431 0 0
Q ss_pred cccccc--CccEEEEEEECCChh-cHHHHHHHHHHHHHh-hcCCCCCcEEEEEeCCCCCCC
Q 028292 78 TSSYYR--GAQGIIMVYDVTRRD-TFTNLADIWAKEIDL-YSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 78 ~~~~~~--~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~D~~~~ 134 (211)
...++. ..|++++|..++... .+.+. . +.+.+.. +...--.++++|.||+|...+
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~d~-~-llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYLDL-P-LLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHHHH-H-HHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 112222 568888887665432 22211 1 2333322 221222568999999998543
No 277
>PRK13768 GTPase; Provisional
Probab=99.53 E-value=7.5e-14 Score=104.73 Aligned_cols=115 Identities=17% Similarity=0.167 Sum_probs=72.5
Q ss_pred EEEEEeCCCcccc---cccccccccC-----ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 62 KLAIWDTAGQERF---RTLTSSYYRG-----AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 62 ~~~i~D~~g~~~~---~~~~~~~~~~-----~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
.+.+||+||+.+. ...+..+++. .+++++++|+.......+....+........ ..++|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 5899999997553 2333222222 7999999999765544333322221211111 35799999999999865
Q ss_pred CcccCH--HHH------------------------HHHHHHhC--CcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 134 ERVVSK--KEG------------------------IDFAREYG--CLFLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 134 ~~~~~~--~~~------------------------~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
..+... ... .+.....+ .+++++|++++.|+++++++|.+.+..
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence 433211 000 01122334 478999999999999999999988754
No 278
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.51 E-value=8.4e-14 Score=118.47 Aligned_cols=116 Identities=19% Similarity=0.190 Sum_probs=81.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhC---------------CCCC----CCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSD---------------TFEE----LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~---------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (211)
++..||+++|+.++|||||+++|+.. .+.. ...+...........+++..+.+++|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 45679999999999999999999853 1111 1112222222223346677889999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
..+.......+..+|++|+|+|+.+....+.... |.. .. ..+.|+++++||+|..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~-~~~-~~----~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETV-LRQ-AL----KENVKPVLFINKVDRL 151 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHH-HHH-HH----HcCCCEEEEEEChhcc
Confidence 9888777888999999999999987532222111 222 11 3567889999999984
No 279
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=9e-13 Score=99.55 Aligned_cols=162 Identities=18% Similarity=0.208 Sum_probs=97.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC----CCCC--CCcceeee--EEEEEEE-------CCeEEEEEEEeCCCcccccccc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDT----FEEL--SPTIGVDF--KIKHVAL-------GGKKMKLAIWDTAGQERFRTLT 78 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~----~~~~--~~~~~~~~--~~~~~~~-------~~~~~~~~i~D~~g~~~~~~~~ 78 (211)
+|+.++|+..+|||||.++|..-. |+.. ....|.+. ....+.+ .++..++.++|+||+...-...
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRti 87 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTI 87 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHH
Confidence 999999999999999999997532 2221 11122211 1111211 4566788999999986555444
Q ss_pred cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCH-HHHHHHHH---H----
Q 028292 79 SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VSK-KEGIDFAR---E---- 148 (211)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~-~~~~~~~~---~---- 148 (211)
.....-.|..++|+|+.....-+.....++-.+ ...-.+||+||.|..++.+ ... +......+ .
T Consensus 88 iggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~ 161 (522)
T KOG0461|consen 88 IGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD 161 (522)
T ss_pred HhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence 444455588999999987654444433222221 2334678888888755422 111 12222222 1
Q ss_pred hCCcEEEeccCCC----CCHHHHHHHHHHHHHcCCCc
Q 028292 149 YGCLFLECSAKTR----VNVEQCFEELVLKILDTPSL 181 (211)
Q Consensus 149 ~~~~~~~~Sa~~~----~~v~~~~~~i~~~~~~~~~~ 181 (211)
-+.|++++||+.| +++.++...|-.++.+....
T Consensus 162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd 198 (522)
T KOG0461|consen 162 GNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRD 198 (522)
T ss_pred CCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcC
Confidence 1369999999999 56666666665555554433
No 280
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.50 E-value=3e-13 Score=99.06 Aligned_cols=163 Identities=15% Similarity=0.185 Sum_probs=96.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCC---CcceeeeEEEEEEECCeEEEEEEEeCCCcccccc--------c---cc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS---PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT--------L---TS 79 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~---~~ 79 (211)
++|+|+|.+|+||||++|.+++....... .............+++ ..+.++||||..+... + ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999988762221 2223344444455566 4578899999432211 1 11
Q ss_pred ccccCccEEEEEEECCChhcHH--HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-------HHHHHHHHHHhC
Q 028292 80 SYYRGAQGIIMVYDVTRRDTFT--NLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS-------KKEGIDFAREYG 150 (211)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~ 150 (211)
....+.|+++||+..... +-. .....+...+.. ..-..++||++..|......+. ......+....+
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~~~~~l~~l~~~FG~---~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~ 154 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEEDREVLELLQEIFGE---EIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCG 154 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHHHHHHHHHHHHHCG---GGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCCCeEEEEEEecCcc-hHHHHHHHHHHHHHccH---HHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcC
Confidence 234578999999999833 222 222223333332 2234578888888865444321 122445666677
Q ss_pred CcEEEeccC------CCCCHHHHHHHHHHHHHcCCCcc
Q 028292 151 CLFLECSAK------TRVNVEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 151 ~~~~~~Sa~------~~~~v~~~~~~i~~~~~~~~~~~ 182 (211)
-.|+..+.+ ....+.+++..|-+.+.++...+
T Consensus 155 ~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~ 192 (212)
T PF04548_consen 155 GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQY 192 (212)
T ss_dssp TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred CEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCC
Confidence 778877766 34578899999888888776544
No 281
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.49 E-value=8.7e-13 Score=95.42 Aligned_cols=101 Identities=19% Similarity=0.145 Sum_probs=64.7
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcE--EEEEeCCCCCCCcccC
Q 028292 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK--LLVGNKVDKESERVVS 138 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~--ivv~nK~D~~~~~~~~ 138 (211)
..+.++++.|..-.....+. -+|.+|.|+|+.+.++... . +. .++.+ ++++||+|+.+.....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~-~~---------~qi~~ad~~~~~k~d~~~~~~~~ 156 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--K-GG---------PGITRSDLLVINKIDLAPMVGAD 156 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--h-hH---------hHhhhccEEEEEhhhcccccccc
Confidence 45667788874222222221 2578999999987654221 1 11 12223 7999999997532333
Q ss_pred HHHHHHHHHH--hCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 139 KKEGIDFARE--YGCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 139 ~~~~~~~~~~--~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
.+...+.... .+.+++++||++|+|+++++++|.+++.
T Consensus 157 ~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 157 LGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4444444444 3579999999999999999999997754
No 282
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=6.6e-13 Score=106.20 Aligned_cols=169 Identities=19% Similarity=0.181 Sum_probs=112.9
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCC--------------------------C----CCCCCcceeeeEEEEEEEC
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDT--------------------------F----EELSPTIGVDFKIKHVALG 57 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~--------------------------~----~~~~~~~~~~~~~~~~~~~ 57 (211)
.....-++.+|+|+..+|||||+.+++..- + .......|.+..+....++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 344477899999999999999999997521 0 1122344667777788888
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh---cHH---HHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292 58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFT---NLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (211)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (211)
.....++|+|+||+..|-........++|++|+|+|++..+ .|+ ...+ ...+++.+ .-..++|++||+|+
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~L---gi~qlivaiNKmD~ 327 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSL---GISQLIVAINKMDL 327 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHc---CcceEEEEeecccc
Confidence 88889999999999999888888889999999999997642 122 1112 22233322 24557888999998
Q ss_pred CCCcccCHHHH----HHHH-HHh-----CCcEEEeccCCCCCHHHH-HHHHHHHHHcCCC
Q 028292 132 ESERVVSKKEG----IDFA-REY-----GCLFLECSAKTRVNVEQC-FEELVLKILDTPS 180 (211)
Q Consensus 132 ~~~~~~~~~~~----~~~~-~~~-----~~~~~~~Sa~~~~~v~~~-~~~i~~~~~~~~~ 180 (211)
.+=.+-..+++ ..|. ... ++.|++||+..|+|+-.. -..-+..+|+.+.
T Consensus 328 V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~ 387 (603)
T KOG0458|consen 328 VSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPT 387 (603)
T ss_pred cCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCCh
Confidence 65333223332 2333 333 347999999999998655 2223444444433
No 283
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.47 E-value=9e-13 Score=114.28 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=89.7
Q ss_pred cHHHHHHHHhhCCCCC-CCCcceeeeEEEEEEECC----------------eEEEEEEEeCCCcccccccccccccCccE
Q 028292 25 GKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGG----------------KKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (211)
Q Consensus 25 GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (211)
+||||+.++.+..... ..-....++....+..+. ....+.||||||++.+..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 4999999999776511 111111111111222211 01238999999999998877777888999
Q ss_pred EEEEEECCC---hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC------------HHHHH-HH------
Q 028292 88 IIMVYDVTR---RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS------------KKEGI-DF------ 145 (211)
Q Consensus 88 ~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------------~~~~~-~~------ 145 (211)
+++|+|+++ +++++.+. .+. ..++|+++|+||+|+.+..... .+... ++
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~-----~lk----~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~ 623 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN-----ILR----QYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYE 623 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH-----HHH----HcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHH
Confidence 999999987 34444332 222 2468999999999985322110 01000 00
Q ss_pred ----HHH-------------h--CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 146 ----ARE-------------Y--GCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 146 ----~~~-------------~--~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
... + .++++++||++|+|+++++.+|.....
T Consensus 624 v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 624 LIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 011 1 358999999999999999988865443
No 284
>PTZ00258 GTP-binding protein; Provisional
Probab=99.47 E-value=1e-12 Score=103.25 Aligned_cols=84 Identities=21% Similarity=0.163 Sum_probs=56.3
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCe---------------EEEEEEEeCCCccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGK---------------KMKLAIWDTAGQER 73 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~---------------~~~~~i~D~~g~~~ 73 (211)
...++|+++|.||||||||+|+|++... .....++++.. ...+.+.+. ..++.++|+||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 4678999999999999999999987764 33333444333 323333322 23589999999432
Q ss_pred c-------cccccccccCccEEEEEEECC
Q 028292 74 F-------RTLTSSYYRGAQGIIMVYDVT 95 (211)
Q Consensus 74 ~-------~~~~~~~~~~~d~~ilv~d~~ 95 (211)
- .......++++|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 112233467899999999974
No 285
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.45 E-value=6.7e-13 Score=99.09 Aligned_cols=96 Identities=21% Similarity=0.244 Sum_probs=76.4
Q ss_pred ccccccccccccCccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC
Q 028292 72 ERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG 150 (211)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 150 (211)
+++..+.+.++.++|++++|||++++. +|..+.. |+..+. ..++|+++|+||+|+.+...+..+.+..+ ...+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r-~l~~~~----~~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g 97 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR-FLVVAE----AQNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIG 97 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHH-HHHHHH----HCCCCEEEEEECcccCCCHHHHHHHHHHH-HHCC
Confidence 556777888899999999999999887 8888766 665554 36799999999999966554444444444 4578
Q ss_pred CcEEEeccCCCCCHHHHHHHHHH
Q 028292 151 CLFLECSAKTRVNVEQCFEELVL 173 (211)
Q Consensus 151 ~~~~~~Sa~~~~~v~~~~~~i~~ 173 (211)
.+++++||++|.|+++++..+..
T Consensus 98 ~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 98 YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CeEEEEecCCchhHHHHHhhhcC
Confidence 89999999999999999988764
No 286
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.45 E-value=1.8e-12 Score=101.32 Aligned_cols=162 Identities=17% Similarity=0.207 Sum_probs=116.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC--C-------------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--E-------------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT 76 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~--~-------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (211)
..-||.++-+...|||||+..|+.+.- . ......|.++-.+..-+....+.++|+||||+.+|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 345899999999999999999986532 1 1223335566666666677778999999999999999
Q ss_pred cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHH-------
Q 028292 77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VSKKEGIDFARE------- 148 (211)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~------- 148 (211)
..+..+.=.|++++++|+.....-+.- .+.......+.+.|||+||.|.+..+. .-..+...++..
T Consensus 84 EVERvl~MVDgvlLlVDA~EGpMPQTr------FVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQ 157 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGPMPQTR------FVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQ 157 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCCCCchh------hhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhh
Confidence 999999999999999999886433221 111111146666789999999876653 223344444443
Q ss_pred hCCcEEEeccCCCC----------CHHHHHHHHHHHHHcCC
Q 028292 149 YGCLFLECSAKTRV----------NVEQCFEELVLKILDTP 179 (211)
Q Consensus 149 ~~~~~~~~Sa~~~~----------~v~~~~~~i~~~~~~~~ 179 (211)
..+|+++.|+++|. ++.-+|+.|++.+....
T Consensus 158 LdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 158 LDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 45689999998873 67778888888776544
No 287
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.45 E-value=5.1e-12 Score=98.43 Aligned_cols=160 Identities=14% Similarity=0.145 Sum_probs=98.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC----CCC-----------CCCCcce---eeeEE-------EEEE-ECCeEEEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD----TFE-----------ELSPTIG---VDFKI-------KHVA-LGGKKMKLAI 65 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~----~~~-----------~~~~~~~---~~~~~-------~~~~-~~~~~~~~~i 65 (211)
..+.|.|+|+.++||||||++|.+. ... ..++..| ++... ..+. .++...++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 5689999999999999999999987 322 3334445 22222 2222 2455678999
Q ss_pred EeCCCcccc--------cc--c-------------------cccccc-CccEEEEEE-ECC----ChhcHHHHHHHHHHH
Q 028292 66 WDTAGQERF--------RT--L-------------------TSSYYR-GAQGIIMVY-DVT----RRDTFTNLADIWAKE 110 (211)
Q Consensus 66 ~D~~g~~~~--------~~--~-------------------~~~~~~-~~d~~ilv~-d~~----~~~s~~~~~~~~~~~ 110 (211)
+||+|-..- .. + .+..+. ++|+.|+|. |.+ .++.+......+...
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999992111 11 0 122344 889999988 764 123344444445555
Q ss_pred HHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292 111 IDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 111 ~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
+. ..++|+++|+|+.|-.... ..+.+.++...++++++.+|+..- .-+++..-+.+.+++.
T Consensus 176 Lk----~~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l-~~~DI~~il~~vL~EF 236 (492)
T TIGR02836 176 LK----ELNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESM-RESDILSVLEEVLYEF 236 (492)
T ss_pred HH----hcCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHc-CHHHHHHHHHHHHhcC
Confidence 55 5789999999999942222 333444666778999888887542 2344444444445544
No 288
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.44 E-value=2.3e-12 Score=97.53 Aligned_cols=152 Identities=22% Similarity=0.165 Sum_probs=105.0
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-------------C-------------------CCCCcceeeeEEEEEEEC
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-------------E-------------------ELSPTIGVDFKIKHVALG 57 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------~-------------------~~~~~~~~~~~~~~~~~~ 57 (211)
....+|.+.+|...=||||||-||+...- . +-....|.++++....+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 34678999999999999999999986311 0 001223555666665566
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 028292 58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 137 (211)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 137 (211)
..+..+.+-||||++.|....-.....+|.+|+++|+...-.-+.-+. ..+... ..-..++++.||+||.+-.+.
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRH---s~I~sL--LGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRH---SFIASL--LGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHH---HHHHHH--hCCcEEEEEEeeecccccCHH
Confidence 666788999999999999888788888999999999966522222111 112221 234557788899999765544
Q ss_pred CHHH----HHHHHHHhCC---cEEEeccCCCCCHHH
Q 028292 138 SKKE----GIDFAREYGC---LFLECSAKTRVNVEQ 166 (211)
Q Consensus 138 ~~~~----~~~~~~~~~~---~~~~~Sa~~~~~v~~ 166 (211)
..++ -..|+...++ .++++||..|+||-.
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 4443 3356666665 689999999998753
No 289
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.44 E-value=1.2e-12 Score=95.70 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=86.9
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCC-------CCCccee------eeEEEEEEECC-----------------
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-------LSPTIGV------DFKIKHVALGG----------------- 58 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-------~~~~~~~------~~~~~~~~~~~----------------- 58 (211)
+......|+|+|+.|+|||||+++++...... .....+. ......+.+.+
T Consensus 18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~ 97 (207)
T TIGR00073 18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED 97 (207)
T ss_pred hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence 34467899999999999999999998541100 0000000 00000011110
Q ss_pred ---eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292 59 ---KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER 135 (211)
Q Consensus 59 ---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 135 (211)
..+.+.++|+.|.-.... .+....+..+.|+|+.+.+... .. . .. ....|.++++||+|+.+..
T Consensus 98 ~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~-~---~~----~~~~a~iiv~NK~Dl~~~~ 164 (207)
T TIGR00073 98 LPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LK-Y---PG----MFKEADLIVINKADLAEAV 164 (207)
T ss_pred hccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hh-h---Hh----HHhhCCEEEEEHHHccccc
Confidence 123566777777211111 1112234556677776543211 11 1 11 1346789999999996543
Q ss_pred ccCHHHHHHHHHHhC--CcEEEeccCCCCCHHHHHHHHHHH
Q 028292 136 VVSKKEGIDFAREYG--CLFLECSAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 136 ~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~~ 174 (211)
.....+..+.....+ .+++++||+++.|++++++++.+.
T Consensus 165 ~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 165 GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 333334444444444 789999999999999999999875
No 290
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.43 E-value=1e-11 Score=96.24 Aligned_cols=119 Identities=18% Similarity=0.184 Sum_probs=84.9
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh----------hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (211)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (211)
..+.+.+||++|+...+..|..++.+++++|+|+|+++. ..+.+....+...+.... -.++|+++++||
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~-~~~~pill~~NK 237 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRW-FANTSIILFLNK 237 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcc-ccCCCEEEEccC
Confidence 356789999999999999999999999999999999974 344444443444444322 468999999999
Q ss_pred CCCCCC----------------cccCHHHHHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292 129 VDKESE----------------RVVSKKEGIDFARE----------YGCLFLECSAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 129 ~D~~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
.|+... ..-+.+.+..+... ..+-++.++|.+..++..+|+.+.+.+...
T Consensus 238 ~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 238 KDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred hHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 996210 01233444444332 123457788999999999999988887754
No 291
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.41 E-value=8.3e-13 Score=114.07 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=81.3
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCC--C-------------CCCcceeeeEE--EEEEE--------------C
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE--E-------------LSPTIGVDFKI--KHVAL--------------G 57 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~--~-------------~~~~~~~~~~~--~~~~~--------------~ 57 (211)
..++..||+|+|+.++|||||+.+|+...-. . .....|.++.. ..+.+ .
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 3456779999999999999999999864320 0 00011112221 12222 2
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
+..+.++|+||||+.+|.......++.+|++|+|+|+...-....... |.... ..++|+++++||+|..
T Consensus 95 ~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~-~~~~~-----~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 95 GNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQAL-----GERIRPVLTVNKMDRC 163 (843)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHH-HHHHH-----HCCCCEEEEEECCccc
Confidence 236788999999999998888888899999999999987643332221 33222 4689999999999985
No 292
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.41 E-value=1.6e-13 Score=101.71 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=58.6
Q ss_pred EEEEEeCCCcccccccccccc--------cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 62 KLAIWDTAGQERFRTLTSSYY--------RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
.+.++|||||.++-..|...- ...-++|+++|.....+.......++....... ..+.|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~-~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML-RLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH-HHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh-hCCCCEEEeeeccCccc
Confidence 578999999877543332222 345688899998755443322222222222222 46899999999999965
Q ss_pred Ccc---c-------------------CHHHHHHHHHHhC-C-cEEEeccCCCCCHHHHHHHHHHHH
Q 028292 134 ERV---V-------------------SKKEGIDFAREYG-C-LFLECSAKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 134 ~~~---~-------------------~~~~~~~~~~~~~-~-~~~~~Sa~~~~~v~~~~~~i~~~~ 175 (211)
... . ..+.+.+...+++ + .++++|+.+++|+++++..+-+++
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 220 0 0001111111233 3 699999999999999999887764
No 293
>PTZ00416 elongation factor 2; Provisional
Probab=99.41 E-value=9.7e-13 Score=113.48 Aligned_cols=117 Identities=19% Similarity=0.208 Sum_probs=79.0
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCC-------------CCcceeeeEE--EEEEEC--------CeEEEEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EEL-------------SPTIGVDFKI--KHVALG--------GKKMKLA 64 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~-------------~~~~~~~~~~--~~~~~~--------~~~~~~~ 64 (211)
.++..||+++|+.++|||||+++|+...- ... ....|.+... ..+.+. +....++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 34566999999999999999999986321 000 0011112221 122222 1256799
Q ss_pred EEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
|+||||+.++.......++.+|++|+|+|+...-..... ..|. .+. ..++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~-~~~----~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLR-QAL----QERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHH-HHH----HcCCCEEEEEEChhhh
Confidence 999999998887788888999999999999886333222 2132 222 3568999999999985
No 294
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=4.5e-12 Score=94.91 Aligned_cols=182 Identities=15% Similarity=0.122 Sum_probs=120.3
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCC--------------CCCccee--------eeEEEEEEEC------CeEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEE--------------LSPTIGV--------DFKIKHVALG------GKKMK 62 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~--------------~~~~~~~--------~~~~~~~~~~------~~~~~ 62 (211)
...+||.++|+...|||||..+|.+--.+. |...... +.+...-.+. .-..+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 467999999999999999999998632100 0000000 0011111111 12246
Q ss_pred EEEEeCCCcccccccccccccCccEEEEEEECCCh----hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc--c
Q 028292 63 LAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER--V 136 (211)
Q Consensus 63 ~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~ 136 (211)
+.|+|.||++-.-........-.|++++|+.++.+ ++-+++.. +..+ .-+.++++-||.|+.... .
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A--leIi------gik~iiIvQNKIDlV~~E~Al 159 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMA--LEII------GIKNIIIVQNKIDLVSRERAL 159 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHH--Hhhh------ccceEEEEecccceecHHHHH
Confidence 88999999987766655555567999999999874 34444432 2333 234588999999995433 2
Q ss_pred cCHHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHcCCCcccCCCCCcccccccCCCCC
Q 028292 137 VSKKEGIDFARE---YGCLFLECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGVKKNIFKESPPQ 200 (211)
Q Consensus 137 ~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (211)
.+++++++|.+. .+.+++++||..+.|++.+++.|.+.+.............--.+.|...++.
T Consensus 160 E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p~m~v~RSFDVNkPG 226 (415)
T COG5257 160 ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPPRMYVARSFDVNKPG 226 (415)
T ss_pred HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCceEEEEeecccCCCC
Confidence 345566666654 4679999999999999999999999998777766665555555555554444
No 295
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.39 E-value=1.1e-11 Score=91.58 Aligned_cols=140 Identities=18% Similarity=0.206 Sum_probs=84.0
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
......|+++|.+|+|||||++.+.+... .......|. + .+ ......++.++||||.. ..+ ......+|++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEE
Confidence 34567899999999999999999987532 112222221 1 11 11245578899999853 222 2335789999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcE-EEEEeCCCCCCCcccC---HHHHHH-HHHH--hCCcEEEeccCCC
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGNKVDKESERVVS---KKEGID-FARE--YGCLFLECSAKTR 161 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~~---~~~~~~-~~~~--~~~~~~~~Sa~~~ 161 (211)
++++|.+........ . +...+. ..+.|. ++|+||.|+.+..... ..++.. +... .+.+++.+||++.
T Consensus 108 llviDa~~~~~~~~~-~-i~~~l~----~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~ 181 (225)
T cd01882 108 LLLIDASFGFEMETF-E-FLNILQ----VHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVH 181 (225)
T ss_pred EEEEecCcCCCHHHH-H-HHHHHH----HcCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccC
Confidence 999999865433221 1 333333 345675 4599999985432111 112222 2222 2358999999987
Q ss_pred CC
Q 028292 162 VN 163 (211)
Q Consensus 162 ~~ 163 (211)
-.
T Consensus 182 ~~ 183 (225)
T cd01882 182 GR 183 (225)
T ss_pred CC
Confidence 53
No 296
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.39 E-value=1.7e-11 Score=95.28 Aligned_cols=81 Identities=21% Similarity=0.176 Sum_probs=54.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeee--EEEEEEECCeE---------------EEEEEEeCCCccccc-
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDF--KIKHVALGGKK---------------MKLAIWDTAGQERFR- 75 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------~~~~i~D~~g~~~~~- 75 (211)
++|+++|.||||||||+|+|++... .....++++. ....+.+.+.. .++.++|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 7899999999999999999998874 3333333332 22233333321 358999999943211
Q ss_pred ---c---cccccccCccEEEEEEECC
Q 028292 76 ---T---LTSSYYRGAQGIIMVYDVT 95 (211)
Q Consensus 76 ---~---~~~~~~~~~d~~ilv~d~~ 95 (211)
. .....++++|++++|+|+.
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 1223467899999999984
No 297
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.38 E-value=7.6e-12 Score=106.90 Aligned_cols=116 Identities=21% Similarity=0.230 Sum_probs=78.1
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCCC-------------CcceeeeEEE----EEEECCeEEEEEEEeCCCc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELS-------------PTIGVDFKIK----HVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~-------------~~~~~~~~~~----~~~~~~~~~~~~i~D~~g~ 71 (211)
++..+|+++|+.++|||||+.+|+...- .... ...|.++... .+...+..+.++|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 4567899999999999999999986322 1000 0001111111 2223445788999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
.++.......+..+|++|+|+|+......... ..|.... ..+.|.++++||+|..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~~~~-----~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLRQAL-----RERVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHHHHH-----HcCCCeEEEEECchhh
Confidence 99888888888999999999999876332221 2133222 2356789999999974
No 298
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.38 E-value=3.3e-11 Score=96.64 Aligned_cols=165 Identities=22% Similarity=0.290 Sum_probs=116.0
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
+....++++..|+|+.++|||.|++.+++..+ ..+..+....+....+...+...-+.+-|.+-. ........- ..+
T Consensus 419 ~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~c 496 (625)
T KOG1707|consen 419 KQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AAC 496 (625)
T ss_pred ccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-cee
Confidence 45556889999999999999999999999888 333344444455555555566666677777643 111111111 568
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHhCC-cEEEeccCCCCC
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VSKKEGIDFAREYGC-LFLECSAKTRVN 163 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 163 (211)
|++.++||.+++.+|......+. .+......|+++|+.|+|+.+..+ ..... .+++.++++ +...+|.++.-.
T Consensus 497 Dv~~~~YDsS~p~sf~~~a~v~~----~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s 571 (625)
T KOG1707|consen 497 DVACLVYDSSNPRSFEYLAEVYN----KYFDLYKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS 571 (625)
T ss_pred eeEEEecccCCchHHHHHHHHHH----HhhhccCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC
Confidence 99999999999999988766332 222247899999999999955432 33333 788999998 466677775333
Q ss_pred HHHHHHHHHHHHHcCC
Q 028292 164 VEQCFEELVLKILDTP 179 (211)
Q Consensus 164 v~~~~~~i~~~~~~~~ 179 (211)
.++|..|..++...+
T Consensus 572 -~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 572 -NELFIKLATMAQYPH 586 (625)
T ss_pred -chHHHHHHHhhhCCC
Confidence 899999999887766
No 299
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.37 E-value=1e-11 Score=83.10 Aligned_cols=113 Identities=34% Similarity=0.380 Sum_probs=78.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-CC-CcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-LS-PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
+||+++|+.|+|||+|+.++....+.. +. ++.+ +........+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998777632 11 2222 222334456678999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
|+..+.++++.+ |...+.... +.+.|.++++||.|+.+...+..++. ..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~---~~~~i~~~~-k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK---NVPEVLVGN-KSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH---hHHHHHhcC-CCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999998765 445554433 56789999999999844333333322 345677888988874
No 300
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.37 E-value=3.9e-11 Score=93.71 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=81.9
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCCh----------hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (211)
..+.+||.+|+...+..|..++.+++++|+|+|+++. ..+.+....+...+... .-.++|++|++||.|
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~-~~~~~piil~~NK~D 262 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR-WFANTSIILFLNKID 262 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc-cccCCcEEEEEecHH
Confidence 5578999999999999999999999999999999973 24555555454444432 246799999999999
Q ss_pred CCCC--------------c-ccCHHHHHHHHHH-----------hCCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292 131 KESE--------------R-VVSKKEGIDFARE-----------YGCLFLECSAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 131 ~~~~--------------~-~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
+... . .-+.+.+..+... ..+-++.++|.+..++..+|+.+...+...
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 7210 0 0123333333321 113457788898899999998888877654
No 301
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.36 E-value=9.2e-12 Score=96.14 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=90.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCC------C-----CCCCCcc--------------eeeeEEEEEEE---------
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDT------F-----EELSPTI--------------GVDFKIKHVAL--------- 56 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~------~-----~~~~~~~--------------~~~~~~~~~~~--------- 56 (211)
.+.+.|.|.|++|+|||||+..+...- . +...+.. +.+........
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~ 133 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGV 133 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccch
Confidence 467899999999999999999875321 0 1111110 00001011110
Q ss_pred -----------CCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEE
Q 028292 57 -----------GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLV 125 (211)
Q Consensus 57 -----------~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv 125 (211)
+...+.+.|+||+|...... .....+|.++++.+....+....... -+. ...-++|
T Consensus 134 a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~----gi~------E~aDIiV 200 (332)
T PRK09435 134 ARKTRETMLLCEAAGYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK----GIM------ELADLIV 200 (332)
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh----hhh------hhhheEE
Confidence 12236789999999653222 24667999999977544443333221 111 1223899
Q ss_pred EeCCCCCCCcccC--HHHHHHHHH-------HhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 126 GNKVDKESERVVS--KKEGIDFAR-------EYGCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 126 ~nK~D~~~~~~~~--~~~~~~~~~-------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
+||+|+....... ..+...... .+..+++.+||+++.|++++++.|.+.+.
T Consensus 201 VNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 201 INKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred eehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 9999986543211 112222211 12358999999999999999999999865
No 302
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1e-11 Score=101.88 Aligned_cols=159 Identities=21% Similarity=0.198 Sum_probs=104.2
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-C----CCCCcceeeeEEEE--------EEEC----CeEEEEEEEeCCC
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-E----ELSPTIGVDFKIKH--------VALG----GKKMKLAIWDTAG 70 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~----~~~~~~~~~~~~~~--------~~~~----~~~~~~~i~D~~g 70 (211)
...-+..-++|+|+..+|||-|+-.+-+... . ......|.++.... +.-+ -.-.-+.++||||
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg 549 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG 549 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence 3445677899999999999999999987544 1 11122222322221 0000 1113478899999
Q ss_pred cccccccccccccCccEEEEEEECCCh---hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------cc-----
Q 028292 71 QERFRTLTSSYYRGAQGIIMVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------RV----- 136 (211)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------~~----- 136 (211)
++.|..+.......+|.+|+|+|+... ++.+++ ++++ ..+.|+||++||.|..-. ..
T Consensus 550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR----~rktpFivALNKiDRLYgwk~~p~~~i~~~l 620 (1064)
T KOG1144|consen 550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLR----MRKTPFIVALNKIDRLYGWKSCPNAPIVEAL 620 (1064)
T ss_pred chhhhhhhhccccccceEEEEeehhccCCcchhHHH-----HHHH----hcCCCeEEeehhhhhhcccccCCCchHHHHH
Confidence 999999999999999999999999875 333332 2222 578999999999996211 00
Q ss_pred ------cCHHH-------HHHHHHHhC---------------CcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 137 ------VSKKE-------GIDFAREYG---------------CLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 137 ------~~~~~-------~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
+..+. +.+|+ ..| +.++++||.+|+||.+++-+|+++..
T Consensus 621 kkQ~k~v~~EF~~R~~~ii~efa-EQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 621 KKQKKDVQNEFKERLNNIIVEFA-EQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH-HcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 00100 00111 111 24689999999999999999998764
No 303
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=1.5e-11 Score=103.07 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=91.0
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-----------------CCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-----------------EELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQ 71 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~ 71 (211)
.++..||.++|+..+|||||..+++...- .+.....|.++......+... .+.++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 56788999999999999999999985421 111223356677777777667 489999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
-+|.......++-+|++|+|+|+...-..+.-.- |++.. ..++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv-~rqa~-----~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETV-WRQAD-----KYGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHH-HHHHh-----hcCCCeEEEEECccccc
Confidence 9999999999999999999999988643332222 43333 57899999999999754
No 304
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.32 E-value=5.5e-11 Score=90.28 Aligned_cols=141 Identities=17% Similarity=0.258 Sum_probs=77.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCCCCC-----------CCcceeeeEEEEEEECCeEEEEEEEeCCCccc--------
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEEL-----------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------- 73 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------- 73 (211)
.++|+|+|.+|+|||||||.|++...... ..+.........+.-++..+.+.|+||||--.
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 58999999999999999999998765111 11222333444555578889999999999110
Q ss_pred ----------cc-------ccccccc--cCccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 74 ----------FR-------TLTSSYY--RGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 74 ----------~~-------~~~~~~~--~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
+. ...+..+ ...|++++.++.+... .-.++. ++..+ ...+++|-|+.|+|...
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~--~mk~L-----s~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE--FMKRL-----SKRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH--HHHHH-----TTTSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH--HHHHh-----cccccEEeEEecccccC
Confidence 00 0000011 3569999999987642 222222 33333 25688999999999854
Q ss_pred CcccC--HHHHHHHHHHhCCcEEEeccCC
Q 028292 134 ERVVS--KKEGIDFAREYGCLFLECSAKT 160 (211)
Q Consensus 134 ~~~~~--~~~~~~~~~~~~~~~~~~Sa~~ 160 (211)
..+.. ...+.+.....++.+|......
T Consensus 157 ~~el~~~k~~i~~~l~~~~I~~f~f~~~~ 185 (281)
T PF00735_consen 157 PEELQAFKQRIREDLEENNIKIFDFPEDD 185 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTT--S-------
T ss_pred HHHHHHHHHHHHHHHHHcCceeecccccc
Confidence 33221 3334455566788777654433
No 305
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.28 E-value=3.5e-11 Score=92.68 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=63.7
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH
Q 028292 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK 139 (211)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 139 (211)
.+.+.|+||+|..... ...+..+|.++++.+.... +++.. +...+ .++|.++|+||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~-~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQG-IKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHH-HHHHH------hhhccEEEEEcccccchhHHHH
Confidence 4678999999853222 2245667888887544333 33332 22111 3577799999999865432111
Q ss_pred HH-----H-HHHHH---HhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 140 KE-----G-IDFAR---EYGCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 140 ~~-----~-~~~~~---~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
.. . ..+.. .+..+++.+||+++.|+++++++|.+...
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00 0 11111 12346999999999999999999998744
No 306
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.28 E-value=2.5e-11 Score=94.53 Aligned_cols=159 Identities=17% Similarity=0.167 Sum_probs=79.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcc---eeeeEEEEEEECCeEEEEEEEeCCCccccccc-----cccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTI---GVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-----TSSY 81 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~ 81 (211)
..+++|+|+|.+|+|||||||.|.+-.. ++....+ .++.....+.. .....+.+||+||.-..... -..-
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 4678999999999999999999976433 2222222 22223333322 12235899999994221111 1223
Q ss_pred ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC-------CCCcccCHHHHH----HHHH---
Q 028292 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK-------ESERVVSKKEGI----DFAR--- 147 (211)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~-------~~~~~~~~~~~~----~~~~--- 147 (211)
+..-|.+|++.+.. |......+...+. ..++|+++|-+|.|. ..++....++.. +.+.
T Consensus 112 ~~~yD~fiii~s~r----f~~ndv~La~~i~----~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 112 FYRYDFFIIISSER----FTENDVQLAKEIQ----RMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp GGG-SEEEEEESSS------HHHHHHHHHHH----HTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCCC----CchhhHHHHHHHH----HcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 55679888776643 3222222444444 468999999999996 122223333322 2222
Q ss_pred -HhCC---cEEEeccCCCC--CHHHHHHHHHHHHHcC
Q 028292 148 -EYGC---LFLECSAKTRV--NVEQCFEELVLKILDT 178 (211)
Q Consensus 148 -~~~~---~~~~~Sa~~~~--~v~~~~~~i~~~~~~~ 178 (211)
..++ ++|-+|..+-. +...+.+.|.+.+...
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 2243 68889987644 5777777777766544
No 307
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=5.8e-11 Score=92.65 Aligned_cols=158 Identities=17% Similarity=0.093 Sum_probs=109.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
+.|...|+-..|||||+..+.+... .....-.|++.+............+.|+|.||++++-...-..+...|.+++|
T Consensus 1 mii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLv 80 (447)
T COG3276 1 MIIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLV 80 (447)
T ss_pred CeEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEE
Confidence 3578889999999999999998765 22233445555555555555566899999999998888777778889999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS--KKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
++.++.-..+.... +..+..+ .-...++|++|+|..+...+. .+++.....-.+.++|.+|+++|+|++++.+
T Consensus 81 V~~deGl~~qtgEh--L~iLdll---gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 81 VAADEGLMAQTGEH--LLILDLL---GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred EeCccCcchhhHHH--HHHHHhc---CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence 99976533333222 2222221 223358999999986543211 1122222222346889999999999999999
Q ss_pred HHHHHHH
Q 028292 170 ELVLKIL 176 (211)
Q Consensus 170 ~i~~~~~ 176 (211)
.|.+...
T Consensus 156 ~l~~L~~ 162 (447)
T COG3276 156 ELIDLLE 162 (447)
T ss_pred HHHHhhh
Confidence 9999885
No 308
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.2e-11 Score=90.27 Aligned_cols=143 Identities=19% Similarity=0.160 Sum_probs=99.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC----------CC-----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD----------TF-----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT 76 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (211)
.-+||..+|+.+.|||||..+++.. .+ .......|.++....+.++.....+-.+|+||+.+|-.
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence 5689999999999999999988642 11 12223456677777888777777888899999999988
Q ss_pred cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcE-EEEEeCCCCCCCcccC---HHHHHHHHHHhCC-
Q 028292 77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGNKVDKESERVVS---KKEGIDFAREYGC- 151 (211)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~- 151 (211)
.......+.|+.|+|+.+.+...-+.... ..+.+ .-++|. ++++||+|+.+..+.. ..+.+++...+++
T Consensus 91 NMItgAaqmDgAILVVsA~dGpmPqTrEH--iLlar----qvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGPMPQTREH--ILLAR----QVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCCCCcchhh--hhhhh----hcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 77777788999999999998644333222 11222 245654 5557999997644332 3356677777765
Q ss_pred ----cEEEeccCC
Q 028292 152 ----LFLECSAKT 160 (211)
Q Consensus 152 ----~~~~~Sa~~ 160 (211)
|++.-||..
T Consensus 165 gd~~Pii~gSal~ 177 (394)
T COG0050 165 GDDTPIIRGSALK 177 (394)
T ss_pred CCCcceeechhhh
Confidence 566666543
No 309
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.26 E-value=7.7e-11 Score=88.84 Aligned_cols=79 Identities=22% Similarity=0.132 Sum_probs=51.8
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCCCCcceee--eEEEEEEECCe---------------EEEEEEEeCCCccccc---
Q 028292 16 LLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGK---------------KMKLAIWDTAGQERFR--- 75 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~--- 75 (211)
|+++|.||||||||+|+|++... .....++++ .....+.+.+. ...+.++|+||...-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 57899999999999999999876 333333333 33333333332 2358999999943211
Q ss_pred -c---cccccccCccEEEEEEECC
Q 028292 76 -T---LTSSYYRGAQGIIMVYDVT 95 (211)
Q Consensus 76 -~---~~~~~~~~~d~~ilv~d~~ 95 (211)
. .....++++|++++|+|..
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 1223357899999999874
No 310
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=1.6e-11 Score=87.94 Aligned_cols=147 Identities=22% Similarity=0.342 Sum_probs=91.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCccccc-----ccccccccCcc
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFR-----TLTSSYYRGAQ 86 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~-----~~~~~~~~~~d 86 (211)
.-||+++|.+|+|||++-..+.......-..-.|-+++...-.+. -....+++||++|++.+- ......+.+.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 458999999999999987777654432222223332333332221 123578999999988543 24456688999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCc--ccCHH----HHHHHHHHhCCcEEEeccC
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESER--VVSKK----EGIDFAREYGCLFLECSAK 159 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~--~~~~~----~~~~~~~~~~~~~~~~Sa~ 159 (211)
++++|||++..+-..++.. +..-+.... ..+..-+....+|+|+.+.. +.... ....+....++.+|++|..
T Consensus 84 vli~vFDves~e~~~D~~~-yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw 162 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHY-YQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW 162 (295)
T ss_pred eeeeeeeccchhhhhhHHH-HHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence 9999999998876666554 444333222 13566677888999995533 22222 2223333445677877766
Q ss_pred C
Q 028292 160 T 160 (211)
Q Consensus 160 ~ 160 (211)
+
T Consensus 163 D 163 (295)
T KOG3886|consen 163 D 163 (295)
T ss_pred h
Confidence 5
No 311
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=1.2e-10 Score=90.81 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=86.2
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCC---------------------CCCCCCcceeeeEEEEEEECCeEEEEEEEe
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDT---------------------FEELSPTIGVDFKIKHVALGGKKMKLAIWD 67 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 67 (211)
+..+.-...++-+|.+|||||-..|+--. +.+.....|..+.+..++++.....+++.|
T Consensus 8 Ev~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLD 87 (528)
T COG4108 8 EVARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLD 87 (528)
T ss_pred HHhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccC
Confidence 34566678899999999999999997311 111112235556666666777778899999
Q ss_pred CCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (211)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (211)
|||+++|..-....+..+|.+|.|+|+...-.-+..+ +....+ ..++||+=.+||.|.
T Consensus 88 TPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~K--LfeVcr----lR~iPI~TFiNKlDR 145 (528)
T COG4108 88 TPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLK--LFEVCR----LRDIPIFTFINKLDR 145 (528)
T ss_pred CCCccccchhHHHHHHhhheeeEEEecccCccHHHHH--HHHHHh----hcCCceEEEeecccc
Confidence 9999999988888888999999999998763222221 333333 689999999999996
No 312
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.23 E-value=1.8e-11 Score=85.78 Aligned_cols=54 Identities=19% Similarity=0.062 Sum_probs=45.6
Q ss_pred EEEEEeCCCCCCCcccCHHHHHHHHHHhC--CcEEEeccCCCCCHHHHHHHHHHHH
Q 028292 122 KLLVGNKVDKESERVVSKKEGIDFAREYG--CLFLECSAKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 122 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~~~ 175 (211)
=++|+||.|+.+.-..+.+...+-++..+ .+++++|+++|+|++++++|+...+
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 37899999998887777777777777654 7999999999999999999988754
No 313
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.22 E-value=2.2e-10 Score=80.91 Aligned_cols=62 Identities=24% Similarity=0.315 Sum_probs=42.2
Q ss_pred EEEEeCCCccc----ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q 028292 63 LAIWDTAGQER----FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129 (211)
Q Consensus 63 ~~i~D~~g~~~----~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (211)
+.|+||||... ....+..+++.+|++|+|.+++....-..... +.+... .....+++|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~----~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLD----PDKSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHT----TTCSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhc----CCCCeEEEEEcCC
Confidence 68999999532 23556777899999999999998755444333 444443 3344488999984
No 314
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.22 E-value=1.6e-10 Score=94.99 Aligned_cols=121 Identities=15% Similarity=0.213 Sum_probs=69.8
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCc-ceeee-EEEEEEECCeEEEEEEEeCCCccccc-------cc---
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPT-IGVDF-KIKHVALGGKKMKLAIWDTAGQERFR-------TL--- 77 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~--- 77 (211)
-+..++|+|+|.+|+||||++|.|++......... .+++. .......+ ...+.|+||||..... .+
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCccccchHHHHHHHHH
Confidence 34668999999999999999999998765222211 22221 12222333 3568999999954321 11
Q ss_pred cccccc--CccEEEEEEECCChhcH-HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 78 TSSYYR--GAQGIIMVYDVTRRDTF-TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 78 ~~~~~~--~~d~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
...++. ..|++|+|..+...... ++. ..+..+...+...-=..+|||+|..|..+
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~-~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDL-PLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHH-HHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 111222 57999999887643332 221 11222222222122245788999999865
No 315
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.20 E-value=8.2e-12 Score=94.11 Aligned_cols=55 Identities=24% Similarity=0.154 Sum_probs=41.4
Q ss_pred CcEEEEEeCCCCCCCcccCHHHHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHHHH
Q 028292 120 CIKLLVGNKVDKESERVVSKKEGIDFAREY--GCLFLECSAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 120 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~ 174 (211)
.+-++|+||+|+.+......+...+..+.. .++++.+||++|+|++++++||..+
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 556899999999654333344444444443 4789999999999999999999874
No 316
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.5e-09 Score=83.64 Aligned_cols=83 Identities=23% Similarity=0.201 Sum_probs=55.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC----------------CeEEEEEEEeCCCc----
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG----------------GKKMKLAIWDTAGQ---- 71 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~----------------~~~~~~~i~D~~g~---- 71 (211)
.+++.++|.||||||||.|.++.... ...+|....+...-.+.+. -....+.|+|.+|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 37899999999999999999998764 2333333222222222221 12356899999982
Q ss_pred ---ccccccccccccCccEEEEEEECC
Q 028292 72 ---ERFRTLTSSYYRGAQGIIMVYDVT 95 (211)
Q Consensus 72 ---~~~~~~~~~~~~~~d~~ilv~d~~ 95 (211)
+.+.......++++|+++.|+|+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 223334455678999999999986
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.17 E-value=2.9e-10 Score=84.14 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=43.9
Q ss_pred EEEEEEeCCCccc-------------cccccccccc-CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 028292 61 MKLAIWDTAGQER-------------FRTLTSSYYR-GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126 (211)
Q Consensus 61 ~~~~i~D~~g~~~-------------~~~~~~~~~~-~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (211)
..++++|+||-.. ...+...++. ..+++++|+|++....-..... +.+.+. ..+.|+++|+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~-ia~~ld----~~~~rti~Vi 199 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK-LAKEVD----PQGERTIGVI 199 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH-HHHHHH----HcCCcEEEEE
Confidence 4588999999532 1123455666 4468899999875433222222 333333 4679999999
Q ss_pred eCCCCCCC
Q 028292 127 NKVDKESE 134 (211)
Q Consensus 127 nK~D~~~~ 134 (211)
||+|..+.
T Consensus 200 TK~D~~~~ 207 (240)
T smart00053 200 TKLDLMDE 207 (240)
T ss_pred ECCCCCCc
Confidence 99998654
No 318
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.10 E-value=3.6e-10 Score=90.21 Aligned_cols=159 Identities=25% Similarity=0.415 Sum_probs=117.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
..+|+.|+|..++|||.|+++++.+.+. ...+.-| ....++.+++....+.+.|-+|... -.|....|++|+
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 4589999999999999999999999883 3333333 5566677788887888888877322 234456899999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC--CCcccCHHHHHHHHHH-hCCcEEEeccCCCCCHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE--SERVVSKKEGIDFARE-YGCLFLECSAKTRVNVEQC 167 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~ 167 (211)
||...+..+|+.+..+.. .+..+.....+|+++++++.-.. ..+.+......+++.+ ..+.+|+..+.+|.++...
T Consensus 102 vf~~~d~~s~q~v~~l~~-~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rv 180 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAH-EMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERV 180 (749)
T ss_pred EEEeccccCHHHHHHHHh-hcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHH
Confidence 999999999999887444 44444436778888888765542 2344455555555444 4579999999999999999
Q ss_pred HHHHHHHHHcC
Q 028292 168 FEELVLKILDT 178 (211)
Q Consensus 168 ~~~i~~~~~~~ 178 (211)
|+.+...+...
T Consensus 181 f~~~~~k~i~~ 191 (749)
T KOG0705|consen 181 FQEVAQKIVQL 191 (749)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 319
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.2e-09 Score=83.70 Aligned_cols=126 Identities=20% Similarity=0.267 Sum_probs=81.3
Q ss_pred CCccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeE------E-------------
Q 028292 3 SSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKK------M------------- 61 (211)
Q Consensus 3 ~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~------------- 61 (211)
...++.+.....-|+++|+...||||+|+.|+...+ ....+.+.+++....+.-+.+. .
T Consensus 48 p~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~ 127 (532)
T KOG1954|consen 48 PALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNK 127 (532)
T ss_pred ccccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhh
Confidence 345667788888999999999999999999999888 3444444444444443322111 0
Q ss_pred --------------------EEEEEeCCCcccc-----------cccccccccCccEEEEEEECCChhcHHHHHHHHHHH
Q 028292 62 --------------------KLAIWDTAGQERF-----------RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKE 110 (211)
Q Consensus 62 --------------------~~~i~D~~g~~~~-----------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 110 (211)
.++|+||||.-.- .....-+...+|.+|++||+..-+--++ +...
T Consensus 128 FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdE----f~~v 203 (532)
T KOG1954|consen 128 FGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDE----FKRV 203 (532)
T ss_pred hHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHH----HHHH
Confidence 3789999993221 2223344578999999999865433222 2223
Q ss_pred HHhhcCCCCCcEEEEEeCCCCCC
Q 028292 111 IDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 111 ~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
+.... ...--+-||+||+|..+
T Consensus 204 i~aLk-G~EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 204 IDALK-GHEDKIRVVLNKADQVD 225 (532)
T ss_pred HHHhh-CCcceeEEEeccccccC
Confidence 33333 33344678899999843
No 320
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.07 E-value=4e-10 Score=79.61 Aligned_cols=57 Identities=26% Similarity=0.367 Sum_probs=47.4
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (211)
...++|+++|.||+|||||+|+|.+.......+.+|++.....+.++. .+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 345899999999999999999999988767777888887766666543 578999998
No 321
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=4e-09 Score=76.33 Aligned_cols=156 Identities=18% Similarity=0.178 Sum_probs=91.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-C---------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc---cccc--
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-E---------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE---RFRT-- 76 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---~~~~-- 76 (211)
-.|+|.|+|.+|.|||||+|.+...+. . .+..+.........+.-++....++++||||-- ..+.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 458999999999999999999986544 1 122222333334444556777889999999911 1111
Q ss_pred ---------------------ccccccc--CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC-
Q 028292 77 ---------------------LTSSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE- 132 (211)
Q Consensus 77 ---------------------~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~- 132 (211)
.....+. ..+++++.+..+... +..+.-.++..+. .-+.++-|+-|+|..
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt-----~vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLT-----EVVNVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHh-----hhheeeeeEeeccccc
Confidence 1122233 457788877776532 1111111222221 335567778899963
Q ss_pred -CCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Q 028292 133 -SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVL 173 (211)
Q Consensus 133 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 173 (211)
+++..-.+.+++....+++.+++-.+.+...-+..++.-++
T Consensus 199 leEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR 240 (336)
T KOG1547|consen 199 LEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVR 240 (336)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHH
Confidence 33334445566677788898888877765544444444333
No 322
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.06 E-value=4.7e-10 Score=78.29 Aligned_cols=96 Identities=15% Similarity=0.093 Sum_probs=66.2
Q ss_pred ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcE
Q 028292 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLF 153 (211)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 153 (211)
|+++++..+.++|++|+|+|++++...... . +...+. ..++|+++|+||+|+.+.... .....+....+.++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~-l~~~~~----~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~ 73 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-K-LERYVL----ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPV 73 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-H-HHHHHH----hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcE
Confidence 345667778889999999999886433221 1 222222 346899999999998533221 11112334456789
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHc
Q 028292 154 LECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 154 ~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
+.+||+++.|++++++.+.+.+..
T Consensus 74 ~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 74 VYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEEEccccccHHHHHHHHHHHHhh
Confidence 999999999999999999887753
No 323
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.06 E-value=2.3e-08 Score=72.99 Aligned_cols=111 Identities=20% Similarity=0.148 Sum_probs=71.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-------ccccccccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-------RTLTSSYYR 83 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~ 83 (211)
.--+|+++|.|.+|||||+..++.-+. ...+..+..+.-.-.+.+++. .+++.|.||.-+- ....-...+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEee
Confidence 456999999999999999999987664 222333333444445555554 4777899993221 233445567
Q ss_pred CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEE
Q 028292 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~iv 124 (211)
.+|.++.|.|++..+.-..+.+.-+..+....++..+.+.+
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~ 179 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYF 179 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEE
Confidence 89999999999987654444443455555555333333333
No 324
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=1.1e-08 Score=78.94 Aligned_cols=142 Identities=19% Similarity=0.260 Sum_probs=88.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCCC----------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------c-
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTFE----------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------F- 74 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~- 74 (211)
.+++.++|+.|.|||||||.|+...+. ....+.....+...+.-++..+.++++||||.-+ |
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 489999999999999999999877541 1122333344444555567788999999999110 0
Q ss_pred -----------------ccccccccc--CccEEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 75 -----------------RTLTSSYYR--GAQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 75 -----------------~~~~~~~~~--~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
....+..+. ..|+++|.+..+.. -.-.++. ++..+ ...+.+|-|+.|+|....
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~--~Mk~l-----~~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIE--FMKKL-----SKKVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHH--HHHHH-----hccccccceeeccccCCH
Confidence 111222233 57899999987654 1222221 22222 356778888889998544
Q ss_pred cccC--HHHHHHHHHHhCCcEEEeccCCC
Q 028292 135 RVVS--KKEGIDFAREYGCLFLECSAKTR 161 (211)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~~~Sa~~~ 161 (211)
.++. ...+.+-...+++++|..+....
T Consensus 174 ~El~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 174 DELNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 3322 33444555667888777766554
No 325
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.05 E-value=2.1e-10 Score=86.26 Aligned_cols=154 Identities=18% Similarity=0.138 Sum_probs=93.6
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccccc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE---------RFRTLTS 79 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~ 79 (211)
.....-|.|+|.+|+||||||+.|+.... +...-....+.+....+... +..+.+.||-|.- .|+....
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~ATLe 253 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQATLE 253 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHHHH
Confidence 44556789999999999999999996554 22222222222222222222 2356778999821 1222222
Q ss_pred ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc----EEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028292 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI----KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLE 155 (211)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (211)
-+..+|.++-|.|+++|.-.+.... .+..+.... -...| ++=|-||.|..+..... .+ -..+.
T Consensus 254 -eVaeadlllHvvDiShP~ae~q~e~-Vl~vL~~ig-v~~~pkl~~mieVdnkiD~e~~~~e~--------E~--n~~v~ 320 (410)
T KOG0410|consen 254 -EVAEADLLLHVVDISHPNAEEQRET-VLHVLNQIG-VPSEPKLQNMIEVDNKIDYEEDEVEE--------EK--NLDVG 320 (410)
T ss_pred -HHhhcceEEEEeecCCccHHHHHHH-HHHHHHhcC-CCcHHHHhHHHhhccccccccccCcc--------cc--CCccc
Confidence 2578999999999999964444333 444444433 22233 34456888864432211 11 12677
Q ss_pred eccCCCCCHHHHHHHHHHHHHc
Q 028292 156 CSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 156 ~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
+||.+|+|++++...+-..+..
T Consensus 321 isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 321 ISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccccCccHHHHHHHHHHHhhh
Confidence 9999999999999988877654
No 326
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=1.8e-09 Score=88.20 Aligned_cols=116 Identities=25% Similarity=0.313 Sum_probs=82.6
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCC----------CCc------ceeeeEEEEEE-----ECCeEEEEEEEeC
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEEL----------SPT------IGVDFKIKHVA-----LGGKKMKLAIWDT 68 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~------~~~~~~~~~~~-----~~~~~~~~~i~D~ 68 (211)
.....+|.++|+-++|||+|+..|.....+.. ..+ .|..+.....+ ..+..+-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 45778999999999999999999986543111 111 12222222222 2466688999999
Q ss_pred CCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (211)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (211)
||+-.+.......++.+|++++++|+...-++..-.- +...+ ....|+++|+||.|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-ikhai-----q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-IKHAI-----QNRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-HHHHH-----hccCcEEEEEehhHH
Confidence 9999998888888999999999999998766533211 22222 577999999999996
No 327
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.05 E-value=5.3e-10 Score=76.69 Aligned_cols=54 Identities=24% Similarity=0.344 Sum_probs=44.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (211)
+++++|.+|+|||||+|++++..........|.+.....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999887755666667777766666655 4789999994
No 328
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.05 E-value=7.1e-10 Score=77.48 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=44.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (211)
..++|+++|.+|+|||||+|+|.+.......+..|++.....+.... .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 46789999999999999999999887767777778776655554432 367899998
No 329
>PRK00098 GTPase RsgA; Reviewed
Probab=99.04 E-value=1.4e-09 Score=83.60 Aligned_cols=88 Identities=20% Similarity=0.187 Sum_probs=65.8
Q ss_pred cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT 160 (211)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (211)
...++|.+++|+|+.++..+......|+..+. ..++|+++|+||+|+.+... ............+.+++++||++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~----~~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~ 151 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAE----ANGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKE 151 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCC
Confidence 35899999999999988776665444655544 36799999999999953322 22233445566788999999999
Q ss_pred CCCHHHHHHHHHH
Q 028292 161 RVNVEQCFEELVL 173 (211)
Q Consensus 161 ~~~v~~~~~~i~~ 173 (211)
+.|+++++..+..
T Consensus 152 g~gi~~L~~~l~g 164 (298)
T PRK00098 152 GEGLDELKPLLAG 164 (298)
T ss_pred CccHHHHHhhccC
Confidence 9999999887743
No 330
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.04 E-value=1.9e-09 Score=77.71 Aligned_cols=94 Identities=19% Similarity=0.127 Sum_probs=66.3
Q ss_pred ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HH
Q 028292 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----RE 148 (211)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~ 148 (211)
+..++..++..+|++++|+|++++... |...+... ..++|+++|+||+|+.+.. ........+. ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~~--~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRLF--GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHHh--cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhh
Confidence 467788889999999999999886421 11111111 3568999999999986433 2233333333 22
Q ss_pred hCC---cEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 149 YGC---LFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 149 ~~~---~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
.+. .++.+||+++.|+++++++|.+.+.
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 333 6899999999999999999998875
No 331
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.03 E-value=1.7e-10 Score=84.83 Aligned_cols=151 Identities=19% Similarity=0.200 Sum_probs=83.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCCccee----------------eeEEEEEEEC-------
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-----------EELSPTIGV----------------DFKIKHVALG------- 57 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-----------~~~~~~~~~----------------~~~~~~~~~~------- 57 (211)
+.+.|.+-|+||+|||||+..|...-. ++.+|..|- ..+...+--.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 568999999999999999999974210 122222210 1111111110
Q ss_pred -----------CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 028292 58 -----------GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126 (211)
Q Consensus 58 -----------~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (211)
...+.+.|++|.|-= +.--....-+|.+++|.-..-.+..+-++.-++.. +=++|+
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvG---QsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi----------aDi~vV 174 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVG---QSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEI----------ADIFVV 174 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSS---THHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-----------SEEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCC---ccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhh----------ccEEEE
Confidence 112456777887621 11112234579999999988776655544433332 237999
Q ss_pred eCCCCCCCcccCHH--HHHHHHHH----hCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292 127 NKVDKESERVVSKK--EGIDFARE----YGCLFLECSAKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 127 nK~D~~~~~~~~~~--~~~~~~~~----~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 175 (211)
||+|.........+ ....+... +..+++.+||.+++|++++++.|.+..
T Consensus 175 NKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 175 NKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp E--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred eCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 99995333221111 11112111 235899999999999999999998764
No 332
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.03 E-value=2.6e-09 Score=79.81 Aligned_cols=152 Identities=17% Similarity=0.204 Sum_probs=91.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCCcceeee----------------EEEEEE---------
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-----------EELSPTIGVDF----------------KIKHVA--------- 55 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-----------~~~~~~~~~~~----------------~~~~~~--------- 55 (211)
+...|.+-|.||+|||||+..|...-. +..+|.+|-.+ ......
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 557899999999999999999964211 22222222110 000000
Q ss_pred ---------ECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 028292 56 ---------LGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126 (211)
Q Consensus 56 ---------~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (211)
++...+.+.|++|.|--..+ -....-+|.+++|.-..-.+..+-++.-++.+- =++|+
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia----------Di~vI 196 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA----------DIIVI 196 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh----------heeeE
Confidence 01223457888888732222 223345799999888877777766655333322 37899
Q ss_pred eCCCCCCCcccCHH--HHHHHHH------HhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 127 NKVDKESERVVSKK--EGIDFAR------EYGCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 127 nK~D~~~~~~~~~~--~~~~~~~------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
||.|.........+ .+.++.. .+..+++.+||..|+|++++++.|.+...
T Consensus 197 NKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 197 NKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred eccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 99996433221111 1111111 13458999999999999999999988764
No 333
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.02 E-value=1.3e-08 Score=78.09 Aligned_cols=137 Identities=18% Similarity=0.286 Sum_probs=84.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CC----------CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc---ccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EE----------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF---RTL 77 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---~~~ 77 (211)
-.++|+++|+.|.|||||+|.|++... .. ..++.....+...+.-++..+.++++||||--++ ...
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 568999999999999999999998743 11 2233334455555555777889999999991100 111
Q ss_pred c----------------------cc-cc--cCccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292 78 T----------------------SS-YY--RGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (211)
Q Consensus 78 ~----------------------~~-~~--~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (211)
| +. .+ ...|++++.+..+... +..++. .+..+ ...+.+|-|+.|+|.
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe--~Mk~l-----s~~vNlIPVI~KaD~ 174 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIE--AMKRL-----SKRVNLIPVIAKADT 174 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHH--HHHHH-----hcccCeeeeeecccc
Confidence 1 11 11 3468899988876542 222222 23333 255778888899998
Q ss_pred CCCccc--CHHHHHHHHHHhCCcEEE
Q 028292 132 ESERVV--SKKEGIDFAREYGCLFLE 155 (211)
Q Consensus 132 ~~~~~~--~~~~~~~~~~~~~~~~~~ 155 (211)
.-..+. -.+.+.+....+++++|.
T Consensus 175 lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 175 LTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 443322 233444555667888874
No 334
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.01 E-value=7.9e-10 Score=81.52 Aligned_cols=157 Identities=18% Similarity=0.099 Sum_probs=99.4
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------cccccc
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------QERFRT 76 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~ 76 (211)
+..+..+++++|.+|+|||+||+.++..+. ....+..|.+.....+.+.. .+.++|.|| -.++..
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhH
Confidence 346779999999999999999999998776 33444666666666666544 567789999 122333
Q ss_pred ccccccc---CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc------cc-----CHHHH
Q 028292 77 LTSSYYR---GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER------VV-----SKKEG 142 (211)
Q Consensus 77 ~~~~~~~---~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------~~-----~~~~~ 142 (211)
+...++. +.--+++++|++.+-.--+.. ..+++. ..++|+.+|+||||..... .. .....
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~--~i~~~g----e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNP--EIAWLG----ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChH--HHHHHh----hcCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence 3334432 334567777877652221111 333444 5789999999999973211 11 11112
Q ss_pred HHHHHHhCCcEEEeccCCCCCHHHHHHHHHHH
Q 028292 143 IDFAREYGCLFLECSAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 143 ~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 174 (211)
.+.......++..+|+.++.|++.+.-.|.+.
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred cccceeccCCceeeecccccCceeeeeehhhh
Confidence 22222334577789999999998877666543
No 335
>PRK12289 GTPase RsgA; Reviewed
Probab=99.00 E-value=2.8e-09 Score=83.32 Aligned_cols=92 Identities=21% Similarity=0.188 Sum_probs=65.5
Q ss_pred ccccccccCccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEE
Q 028292 76 TLTSSYYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFL 154 (211)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 154 (211)
.+.+..+.++|.+++|+|+.++. .+..+.. |+.... ..++|+++|+||+|+...... +........++..++
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR-~L~~a~----~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~ 153 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSR-FLVKAE----STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPL 153 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHH-HHHHHH----HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEE
Confidence 34445688999999999998875 3333333 444442 467999999999999543221 222333456788999
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 028292 155 ECSAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 155 ~~Sa~~~~~v~~~~~~i~~~ 174 (211)
.+||+++.|++++++.+...
T Consensus 154 ~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 154 FISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEcCCCCCHHHHhhhhccc
Confidence 99999999999999888654
No 336
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.97 E-value=3.1e-08 Score=76.49 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=83.8
Q ss_pred eEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcH-------HHH---HHHHHHHHHhhcCCC
Q 028292 49 FKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTF-------TNL---ADIWAKEIDLYSTNQ 118 (211)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~-------~~~---~~~~~~~~~~~~~~~ 118 (211)
+....+.+.+ ..+.+.|.+|+...+.-|..++.+++++|+|+++++.+.. ..+ ...+...+. ...=.
T Consensus 185 I~e~~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n-~~~F~ 261 (354)
T KOG0082|consen 185 IVEVEFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICN-NKWFA 261 (354)
T ss_pred eeEEEEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhc-Ccccc
Confidence 4444444444 5677889999999999999999999999999999874321 111 121222222 12235
Q ss_pred CCcEEEEEeCCCCCCC--------------cc-cCHHHHHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHH
Q 028292 119 DCIKLLVGNKVDKESE--------------RV-VSKKEGIDFARE----------YGCLFLECSAKTRVNVEQCFEELVL 173 (211)
Q Consensus 119 ~~p~ivv~nK~D~~~~--------------~~-~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~ 173 (211)
+.++|+.+||.|+-++ .. -..+++..+... ..+-+..+.|.+-.+|+.+|..+.+
T Consensus 262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d 341 (354)
T KOG0082|consen 262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTD 341 (354)
T ss_pred cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHH
Confidence 6899999999998221 11 233444443322 1234566788999999999999998
Q ss_pred HHHcCC
Q 028292 174 KILDTP 179 (211)
Q Consensus 174 ~~~~~~ 179 (211)
.+....
T Consensus 342 ~Ii~~n 347 (354)
T KOG0082|consen 342 TIIQNN 347 (354)
T ss_pred HHHHHH
Confidence 887543
No 337
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.94 E-value=6.4e-09 Score=79.62 Aligned_cols=88 Identities=16% Similarity=0.077 Sum_probs=65.9
Q ss_pred cccccCccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEec
Q 028292 79 SSYYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECS 157 (211)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (211)
...+.++|.+++|+|+.++. ++..+.. |+..+. ..++|+++|+||+|+.+... ...........+.+++.+|
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr-~L~~~~----~~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vS 145 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDR-YLVAAE----AAGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVS 145 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHH-HHHHHH----HcCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEE
Confidence 44578999999999999987 7776665 555444 35789999999999955421 1222333455678999999
Q ss_pred cCCCCCHHHHHHHHHH
Q 028292 158 AKTRVNVEQCFEELVL 173 (211)
Q Consensus 158 a~~~~~v~~~~~~i~~ 173 (211)
|+++.|+++++.+|..
T Consensus 146 A~~g~gi~~L~~~L~~ 161 (287)
T cd01854 146 AKTGEGLDELREYLKG 161 (287)
T ss_pred CCCCccHHHHHhhhcc
Confidence 9999999999888764
No 338
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.91 E-value=4.2e-09 Score=74.63 Aligned_cols=57 Identities=23% Similarity=0.350 Sum_probs=46.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (211)
..++++++|.+|+|||||++++.+..+....+..++++....+.++ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4579999999999999999999988775666667777777766664 35789999993
No 339
>PRK12288 GTPase RsgA; Reviewed
Probab=98.90 E-value=1.5e-08 Score=79.28 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=66.0
Q ss_pred ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc-cCHHHHHHHHHHhCCcEEEeccCC
Q 028292 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV-VSKKEGIDFAREYGCLFLECSAKT 160 (211)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (211)
..++|.+++|++.....++..+.. |+.... ..++|.++|+||+|+.+... .............+.+++++||++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr-~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~t 192 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDR-YLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHT 192 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHH-HHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 467899999999987788877766 544443 46789999999999965432 112233344456788999999999
Q ss_pred CCCHHHHHHHHHHH
Q 028292 161 RVNVEQCFEELVLK 174 (211)
Q Consensus 161 ~~~v~~~~~~i~~~ 174 (211)
+.|+++++++|...
T Consensus 193 g~GideL~~~L~~k 206 (347)
T PRK12288 193 GEGLEELEAALTGR 206 (347)
T ss_pred CcCHHHHHHHHhhC
Confidence 99999999988653
No 340
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.90 E-value=6.4e-09 Score=79.69 Aligned_cols=58 Identities=28% Similarity=0.399 Sum_probs=48.1
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (211)
...++|+++|.||||||||+|+|.+.......+.+|.+.....+.++. .+.++||||-
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 456899999999999999999999987767777888877776666544 4789999995
No 341
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.90 E-value=5e-09 Score=79.86 Aligned_cols=58 Identities=24% Similarity=0.384 Sum_probs=47.3
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (211)
...++|+|+|.||+|||||+|+|.+.........+|++.....+.++. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 356899999999999999999999887666677778777766666543 4689999995
No 342
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.87 E-value=7.4e-09 Score=72.23 Aligned_cols=56 Identities=25% Similarity=0.302 Sum_probs=44.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (211)
...+++++|.+++|||||++++.+.....+.++.|.+.....+..+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 45789999999999999999999877666777777765544444333 588999998
No 343
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.87 E-value=4.5e-09 Score=81.55 Aligned_cols=57 Identities=25% Similarity=0.329 Sum_probs=50.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (211)
..++++|+|.||||||||||+|.+.......+.+|.|.....+.++.. +.++||||-
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 457899999999999999999999988888888899888888887775 788999994
No 344
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.3e-09 Score=84.73 Aligned_cols=121 Identities=18% Similarity=0.188 Sum_probs=95.3
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-----------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-----------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (211)
+...+.-+|.++.+-.+||||.-.|++...- -......|.++....+++++.+.+++++||||
T Consensus 32 p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpg 111 (753)
T KOG0464|consen 32 PAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPG 111 (753)
T ss_pred CchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCC
Confidence 4445667999999999999999999975321 11123346788888999999999999999999
Q ss_pred cccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
+-+|+-..+.+++-.|+++.|||.+..-.-+.+.. |.+.- +.++|.+..+||+|....
T Consensus 112 hvdf~leverclrvldgavav~dasagve~qtltv-wrqad-----k~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 112 HVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTV-WRQAD-----KFKIPAHCFINKMDKLAA 169 (753)
T ss_pred cceEEEEHHHHHHHhcCeEEEEeccCCcccceeee-ehhcc-----ccCCchhhhhhhhhhhhh
Confidence 99999999999999999999999998754444444 54332 578999999999997443
No 345
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.85 E-value=3.5e-08 Score=72.30 Aligned_cols=88 Identities=22% Similarity=0.179 Sum_probs=62.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccCcc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------FRTLTSSYYRGAQ 86 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~~d 86 (211)
-++.++|.|.+|||||+..|.+.. .+.....+++.....-.+..+...+++.|.||.-+ -........+.++
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 389999999999999999998654 45555556666655555555666788999999322 1234455567789
Q ss_pred EEEEEEECCChhcHHH
Q 028292 87 GIIMVYDVTRRDTFTN 102 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~ 102 (211)
.+++|.|+..|-+-..
T Consensus 139 li~~vld~~kp~~hk~ 154 (358)
T KOG1487|consen 139 LIFIVLDVLKPLSHKK 154 (358)
T ss_pred EEEEEeeccCcccHHH
Confidence 9999999987644333
No 346
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.83 E-value=2.1e-08 Score=79.22 Aligned_cols=95 Identities=22% Similarity=0.236 Sum_probs=68.6
Q ss_pred cccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH----HH
Q 028292 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID----FA 146 (211)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~ 146 (211)
++.+..+...+...++++++|+|+.+.... |...+.... .+.|+++|+||+|+.+. ....+...+ ++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s------~~~~l~~~~--~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~ 120 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGS------LIPELKRFV--GGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRA 120 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCC------ccHHHHHHh--CCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHH
Confidence 456777778888899999999999876421 333333332 36799999999999653 233333333 45
Q ss_pred HHhCC---cEEEeccCCCCCHHHHHHHHHHH
Q 028292 147 REYGC---LFLECSAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 147 ~~~~~---~~~~~Sa~~~~~v~~~~~~i~~~ 174 (211)
...++ .++.+||+++.|++++++.|.+.
T Consensus 121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 56676 48999999999999999999765
No 347
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1e-07 Score=72.48 Aligned_cols=143 Identities=19% Similarity=0.122 Sum_probs=99.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC----------CC-----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD----------TF-----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT 76 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (211)
.-+||.-+|+...|||||-.+++.- ++ .......|.++....+.++.....+-=.|+||+.+|-.
T Consensus 53 PHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIK 132 (449)
T KOG0460|consen 53 PHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIK 132 (449)
T ss_pred CcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHH
Confidence 4578999999999999999888631 11 12223456677877887777776777789999999988
Q ss_pred cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc---cCHHHHHHHHHHhCC--
Q 028292 77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV---VSKKEGIDFAREYGC-- 151 (211)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~-- 151 (211)
.......+.|+.|+|+.++|...-+.-.. +.+.++. .-..+++.+||.|+.++.+ .-.-+++++..++++
T Consensus 133 NMItGaaqMDGaILVVaatDG~MPQTrEH--lLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~G 207 (449)
T KOG0460|consen 133 NMITGAAQMDGAILVVAATDGPMPQTREH--LLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDG 207 (449)
T ss_pred HhhcCccccCceEEEEEcCCCCCcchHHH--HHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCC
Confidence 87777889999999999999755443322 2222321 2244566689999974432 224456677777764
Q ss_pred ---cEEEeccC
Q 028292 152 ---LFLECSAK 159 (211)
Q Consensus 152 ---~~~~~Sa~ 159 (211)
|++.-||.
T Consensus 208 d~~PvI~GSAL 218 (449)
T KOG0460|consen 208 DNTPVIRGSAL 218 (449)
T ss_pred CCCCeeecchh
Confidence 67766653
No 348
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.81 E-value=8.9e-09 Score=74.24 Aligned_cols=55 Identities=27% Similarity=0.434 Sum_probs=43.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC--------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF--------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (211)
..+++++|.+|+|||||+|+|.+... ......+|++.....+.++. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 46899999999999999999997543 23445567777777777654 478999998
No 349
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=3e-08 Score=71.98 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=104.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-cc--cccccccCccEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-RT--LTSSYYRGAQGIIM 90 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~--~~~~~~~~~d~~il 90 (211)
.+|+++|...+|||++-........+...-....+-....-++.+.-+.+.+||.||+-.+ +. -....++++.++|+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 5699999999999998777766554333222222222222233444567899999997543 22 24556788999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc-ccCH-----HHHHHHHHHhC-----CcEEEeccC
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER-VVSK-----KEGIDFAREYG-----CLFLECSAK 159 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~-----~~~~~~~~~~~-----~~~~~~Sa~ 159 (211)
|+|+.+.. .+.+........+.+.-++++.+-|.++|.|..... .+.. ....+...+.+ +.|+-+| .
T Consensus 108 vIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS-I 185 (347)
T KOG3887|consen 108 VIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS-I 185 (347)
T ss_pred EEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee-e
Confidence 99998752 233333344445566668899999999999974422 2221 11222223333 2445444 4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcc
Q 028292 160 TRVNVEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 160 ~~~~v~~~~~~i~~~~~~~~~~~ 182 (211)
..-.+-+.|..+++.+..+.+..
T Consensus 186 yDHSIfEAFSkvVQkLipqLptL 208 (347)
T KOG3887|consen 186 YDHSIFEAFSKVVQKLIPQLPTL 208 (347)
T ss_pred cchHHHHHHHHHHHHHhhhchhH
Confidence 55678888999888887665544
No 350
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.79 E-value=4.4e-07 Score=62.02 Aligned_cols=148 Identities=19% Similarity=0.234 Sum_probs=86.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCC-Ccccc----------------
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTA-GQERF---------------- 74 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-g~~~~---------------- 74 (211)
..++|.+-|+||||||||+.++...-........| +...++.-++...-+.++|+. |...+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 46899999999999999999998544322222333 555566667777778888877 31110
Q ss_pred ---------cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 028292 75 ---------RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDF 145 (211)
Q Consensus 75 ---------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 145 (211)
....+..+..+|++ ++|--.+..+..- .+...+.... +.++|++.++++.+. ...+.++
T Consensus 82 ~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElks~--~f~~~ve~vl-~~~kpliatlHrrsr-------~P~v~~i 149 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADVI--IIDEIGPMELKSK--KFREAVEEVL-KSGKPLIATLHRRSR-------HPLVQRI 149 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhccH--HHHHHHHHHh-cCCCcEEEEEecccC-------ChHHHHh
Confidence 01122233455654 4565555443221 1444554444 678888888887763 1122222
Q ss_pred HHHhCCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 146 AREYGCLFLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 146 ~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
...+..+.. .+.+|-+.+++.++..+..
T Consensus 150 -k~~~~v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 150 -KKLGGVYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred -hhcCCEEEE---EccchhhHHHHHHHHHhcc
Confidence 333333332 4556666888888877654
No 351
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.78 E-value=1.6e-08 Score=70.43 Aligned_cols=57 Identities=23% Similarity=0.297 Sum_probs=43.4
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (211)
....+|+++|.+|+|||||+|.+.+..........+++.....+.++ ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCC
Confidence 35688999999999999999999987754455555665555555543 3588999998
No 352
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.71 E-value=2.4e-08 Score=79.52 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=53.0
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (211)
.......+.|.++|.|||||||+||.|.+.+...++.|+|.+.+..++.++. .+.++|+||.
T Consensus 308 ~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 308 GERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred CcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 3334447999999999999999999999999988999999988888887665 5788999994
No 353
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=4.1e-08 Score=79.67 Aligned_cols=123 Identities=17% Similarity=0.179 Sum_probs=92.3
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-----------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-----------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (211)
.+.-+|.+.-+-.+||||+-++++...- .+.....|.+.......+.+..+.++++||||+-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 4566899999999999999999985421 11122334556666666677789999999999999
Q ss_pred ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH
Q 028292 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK 139 (211)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 139 (211)
|.-.....++-.|++|+++|....-.-+.... |++.. ..++|.+..+||+|.........
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV-~rQ~~-----ry~vP~i~FiNKmDRmGa~~~~~ 176 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTETV-WRQMK-----RYNVPRICFINKMDRMGASPFRT 176 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhHHH-HHHHH-----hcCCCeEEEEehhhhcCCChHHH
Confidence 99888999999999999999987644333333 44433 47899999999999877655433
No 354
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.68 E-value=1e-07 Score=66.51 Aligned_cols=91 Identities=13% Similarity=0.016 Sum_probs=58.2
Q ss_pred cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT 160 (211)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (211)
.+.++|++++|+|++++..... ..+...+.. . ..++|+++|+||+|+.++... ......+...+....+.+||+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~-~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~ 79 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKK-E-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN 79 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC--HHHHHHHHh-c-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence 4678999999999998742211 112233322 1 356899999999999543221 1112222222223357899999
Q ss_pred CCCHHHHHHHHHHHHH
Q 028292 161 RVNVEQCFEELVLKIL 176 (211)
Q Consensus 161 ~~~v~~~~~~i~~~~~ 176 (211)
+.|++++++.+.+.+.
T Consensus 80 ~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 80 PFGKGSLIQLLRQFSK 95 (157)
T ss_pred cccHHHHHHHHHHHHh
Confidence 9999999999987653
No 355
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.67 E-value=1.2e-07 Score=66.14 Aligned_cols=84 Identities=17% Similarity=0.103 Sum_probs=55.3
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
|++++|+|+.++.+..... +.. ......++|+++|+||+|+.+...+ .+....+....+..++.+||+++.|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~--i~~---~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~ 74 (155)
T cd01849 1 DVILEVLDARDPLGTRSPD--IER---VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIE 74 (155)
T ss_pred CEEEEEEeccCCccccCHH--HHH---HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChh
Confidence 6899999999886554221 111 1111467999999999998443211 111112322334568999999999999
Q ss_pred HHHHHHHHHH
Q 028292 166 QCFEELVLKI 175 (211)
Q Consensus 166 ~~~~~i~~~~ 175 (211)
++.+.+.+..
T Consensus 75 ~L~~~i~~~~ 84 (155)
T cd01849 75 KKESAFTKQT 84 (155)
T ss_pred hHHHHHHHHh
Confidence 9999988764
No 356
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1.2e-07 Score=78.79 Aligned_cols=119 Identities=23% Similarity=0.240 Sum_probs=85.4
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (211)
+.+.+..-+|+++.+...|||||...|+...- .+...+.|.+.....+..--..+.++++|+||+
T Consensus 3 ~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh 82 (887)
T KOG0467|consen 3 QKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH 82 (887)
T ss_pred CCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence 45566778999999999999999999985421 222334455555555655567788999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (211)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (211)
-+|.+.......-+|++++++|+...-.-+... .+++-. ..+.-.++|+||+|.
T Consensus 83 vdf~sevssas~l~d~alvlvdvvegv~~qt~~-----vlrq~~-~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 83 VDFSSEVSSASRLSDGALVLVDVVEGVCSQTYA-----VLRQAW-IEGLKPILVINKIDR 136 (887)
T ss_pred cchhhhhhhhhhhcCCcEEEEeeccccchhHHH-----HHHHHH-HccCceEEEEehhhh
Confidence 999999988888999999999997653222211 111111 244556888999993
No 357
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.65 E-value=4.9e-07 Score=69.97 Aligned_cols=158 Identities=14% Similarity=0.047 Sum_probs=94.7
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCC-CC--------------CcceeeeEEEEEEEC----------------
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LS--------------PTIGVDFKIKHVALG---------------- 57 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~--------------~~~~~~~~~~~~~~~---------------- 57 (211)
.....+.|.++|+.+.|||||+-.|..+..+. .. .....+.....+=++
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 34567899999999999999999998665411 00 000111111111111
Q ss_pred -----CeEEEEEEEeCCCccccccc--ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292 58 -----GKKMKLAIWDTAGQERFRTL--TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130 (211)
Q Consensus 58 -----~~~~~~~i~D~~g~~~~~~~--~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (211)
...--+.|+|+.|++.|-.. ...+-.+.|-.++++.+++..+--.-. .+-.+. ..+.|++++.+|+|
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkE--HLgi~~----a~~lPviVvvTK~D 266 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKE--HLGIAL----AMELPVIVVVTKID 266 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhH--hhhhhh----hhcCCEEEEEEecc
Confidence 11124689999999988543 233346789999999998874432211 222222 46899999999999
Q ss_pred CCCCcccC--HHHHHH----------------------HHHHh---CCcEEEeccCCCCCHHHHHHHHH
Q 028292 131 KESERVVS--KKEGID----------------------FAREY---GCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 131 ~~~~~~~~--~~~~~~----------------------~~~~~---~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
+.+...+. .+++.. .+-+. -+|+|.+|+.+|+|++-+.+.++
T Consensus 267 ~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 267 MVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred cCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 85532111 111111 11111 24899999999999876554443
No 358
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.61 E-value=5.5e-07 Score=69.78 Aligned_cols=143 Identities=17% Similarity=0.200 Sum_probs=80.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCC-----------CcceeeeEEEEEE-------------E
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-----------EELS-----------PTIGVDFKIKHVA-------------L 56 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-----------~~~~-----------~~~~~~~~~~~~~-------------~ 56 (211)
..--|+++|++|+||||++..|...-. +.+. ...+..+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 456788999999999999999975311 1000 0001111110000 0
Q ss_pred CCeEEEEEEEeCCCccccccc--------cc---cc-ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEE
Q 028292 57 GGKKMKLAIWDTAGQERFRTL--------TS---SY-YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLL 124 (211)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~--------~~---~~-~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~iv 124 (211)
....+.+.|+||||....... .. .. -...+..++|+|++... +.+.. ...... .-.+--+
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~-----~~~~~gi 264 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHE-----AVGLTGI 264 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHh-----hCCCCEE
Confidence 123467899999996432211 11 11 12457789999998653 22221 111111 1123468
Q ss_pred EEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292 125 VGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 125 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
|+||.|....-. .+.......++|+.+++ +|++++++.
T Consensus 265 IlTKlD~t~~~G----~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 265 ILTKLDGTAKGG----VVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EEECCCCCCCcc----HHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 899999543322 34455667799999888 888887764
No 359
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.61 E-value=1.1e-06 Score=64.93 Aligned_cols=89 Identities=19% Similarity=0.101 Sum_probs=54.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhC--CCCCCC----CcceeeeEEEEEEECCeEEEEEEEeCCCcccccc------cc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSD--TFEELS----PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT------LT 78 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~ 78 (211)
.+..-|.|+|++++|||+|+|.|++. .+.... .|.|.-........ +....+.++||+|...... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence 45677899999999999999999998 552221 22222222111111 2346799999999543322 12
Q ss_pred cccccC--ccEEEEEEECCChhcH
Q 028292 79 SSYYRG--AQGIIMVYDVTRRDTF 100 (211)
Q Consensus 79 ~~~~~~--~d~~ilv~d~~~~~s~ 100 (211)
...+.. ++++|+..+.......
T Consensus 84 ~~~l~~llss~~i~n~~~~~~~~~ 107 (224)
T cd01851 84 LFALATLLSSVLIYNSWETILGDD 107 (224)
T ss_pred HHHHHHHHhCEEEEeccCcccHHH
Confidence 222333 7888887777655433
No 360
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=7.6e-08 Score=72.20 Aligned_cols=164 Identities=18% Similarity=0.175 Sum_probs=99.6
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC----CCCCCccee--eeEEE-EEEEC--------------------------
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF----EELSPTIGV--DFKIK-HVALG-------------------------- 57 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~----~~~~~~~~~--~~~~~-~~~~~-------------------------- 57 (211)
.-++||.-+|+...||||++.++.+-.. .+....... .+... .+.++
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 4679999999999999999999976321 111110000 00000 00000
Q ss_pred ---C---eEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEe
Q 028292 58 ---G---KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----RDTFTNLADIWAKEIDLYSTNQDCIKLLVGN 127 (211)
Q Consensus 58 ---~---~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~n 127 (211)
+ --..+.|.|+||++-..........-.|++++++..+. |++-+++.. ...+.. +.++++-|
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM~L------khiiilQN 187 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIMKL------KHIIILQN 187 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHhhh------ceEEEEec
Confidence 0 11357899999987655544443344577777666654 244444432 222221 34788899
Q ss_pred CCCCCCCcc--cCHHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHcCCCcc
Q 028292 128 KVDKESERV--VSKKEGIDFARE---YGCLFLECSAKTRVNVEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 128 K~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~ 182 (211)
|.|+..+.. ...++++.|... .+.|++++||.-+.|++-+.++|.+.+.......
T Consensus 188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf 247 (466)
T KOG0466|consen 188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDF 247 (466)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcccc
Confidence 999954332 334455566654 3569999999999999999999998886554444
No 361
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.2e-06 Score=72.25 Aligned_cols=144 Identities=16% Similarity=0.240 Sum_probs=83.1
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeee---------------------------------------
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDF--------------------------------------- 49 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~--------------------------------------- 49 (211)
....||++.|..++||||++|+++..+. ....+++..-.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 3668999999999999999999997654 12222221100
Q ss_pred ---EEEEEEECCeE-----EEEEEEeCCCc---ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCC
Q 028292 50 ---KIKHVALGGKK-----MKLAIWDTAGQ---ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQ 118 (211)
Q Consensus 50 ---~~~~~~~~~~~-----~~~~i~D~~g~---~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~ 118 (211)
....+...... -.+.++|.||. .+.......+...+|++|+|.++.+..+... ++ +..... ..
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~-Ff~~vs----~~ 260 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQ-FFHKVS----EE 260 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HH-HHHHhh----cc
Confidence 00011111111 13678899993 3445566777889999999999987643322 12 332222 23
Q ss_pred CCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC--------cEEEeccCC
Q 028292 119 DCIKLLVGNKVDKESERVVSKKEGIDFAREYGC--------LFLECSAKT 160 (211)
Q Consensus 119 ~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa~~ 160 (211)
.+.++|+-||.|.....+.-.++++.-..+..+ .+|.+|++.
T Consensus 261 KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 261 KPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred CCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 455566667889855443333444333333322 367788764
No 362
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.59 E-value=1.4e-06 Score=70.52 Aligned_cols=135 Identities=17% Similarity=0.252 Sum_probs=85.3
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcc-------------------------------------------
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTI------------------------------------------- 45 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~------------------------------------------- 45 (211)
..+...+|+|+|+..+|||+.+..+.....-...+..
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 3456679999999999999999998754331111100
Q ss_pred ----------eeee--EEEEEEECCeE-EEEEEEeCCCc-------------ccccccccccccCccEEEEEEECCChhc
Q 028292 46 ----------GVDF--KIKHVALGGKK-MKLAIWDTAGQ-------------ERFRTLTSSYYRGAQGIIMVYDVTRRDT 99 (211)
Q Consensus 46 ----------~~~~--~~~~~~~~~~~-~~~~i~D~~g~-------------~~~~~~~~~~~~~~d~~ilv~d~~~~~s 99 (211)
|.+. .++.+++.+.+ .++.++|+||- +..-++...++.+.+++|+|+...+.+-
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDA 463 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDA 463 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcch
Confidence 1111 22223333322 35788999992 1223566778899999999997765544
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH
Q 028292 100 FTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR 147 (211)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 147 (211)
..+...-+...+. ..+...|+|++|.|+.+..-.+...++....
T Consensus 464 ERSnVTDLVsq~D----P~GrRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 464 ERSIVTDLVSQMD----PHGRRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred hhhhHHHHHHhcC----CCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 3333221332222 5778889999999998877667666665544
No 363
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=2.7e-07 Score=71.20 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=92.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCC------------------------CCcceeeeEEEEEEEC----------
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEEL------------------------SPTIGVDFKIKHVALG---------- 57 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~------------------------~~~~~~~~~~~~~~~~---------- 57 (211)
-.+++.|+|-..+|||||+-.|+.++.+.- ....|.+-....+.+.
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 467999999999999999999986543110 0111222222222221
Q ss_pred CeEEEEEEEeCCCccccccccccccc--CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292 58 GKKMKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER 135 (211)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 135 (211)
...--++|+|.+|+..|.......+. ..|.+.+|+.+...-.+-.- + .+-++. .-++|++++.+|+|+....
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTr-E-HLgl~~----AL~iPfFvlvtK~Dl~~~~ 319 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTR-E-HLGLIA----ALNIPFFVLVTKMDLVDRQ 319 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccH-H-HHHHHH----HhCCCeEEEEEeeccccch
Confidence 12234799999999998765544433 24777888888765332211 1 233333 4689999999999985531
Q ss_pred c------------------------cCHHHHHHHHHH---hC-CcEEEeccCCCCCHHHHHH
Q 028292 136 V------------------------VSKKEGIDFARE---YG-CLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 136 ~------------------------~~~~~~~~~~~~---~~-~~~~~~Sa~~~~~v~~~~~ 169 (211)
. -..+++..-++. -+ +|+|.+|..+|+|++-+-.
T Consensus 320 ~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 320 GLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred hHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 1 112222222222 12 4899999999999875433
No 364
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.58 E-value=2.3e-07 Score=70.59 Aligned_cols=85 Identities=22% Similarity=0.201 Sum_probs=58.9
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC---------------CeEEEEEEEeCCCcc---
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG---------------GKKMKLAIWDTAGQE--- 72 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~D~~g~~--- 72 (211)
+.++|.++|.|+||||||.|.|+.... ....|....+.....+.+. .....++++|++|.-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 557999999999999999999998876 4444544444444444442 233568999999832
Q ss_pred ----cccccccccccCccEEEEEEECCC
Q 028292 73 ----RFRTLTSSYYRGAQGIIMVYDVTR 96 (211)
Q Consensus 73 ----~~~~~~~~~~~~~d~~ilv~d~~~ 96 (211)
.........++.+|+++-|+++..
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEecC
Confidence 222333445788999999988753
No 365
>PRK12289 GTPase RsgA; Reviewed
Probab=98.57 E-value=1.2e-07 Score=74.39 Aligned_cols=56 Identities=25% Similarity=0.310 Sum_probs=38.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCCCCcce-------eeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292 16 LLLIGDSGVGKSTLLLSFTSDTFEELSPTIG-------VDFKIKHVALGGKKMKLAIWDTAGQERF 74 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (211)
++|+|++|||||||||+|+...........+ ++....-+.+.+.. .++||||-..+
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 7999999999999999999765433333333 45555555554333 57899995433
No 366
>PRK12288 GTPase RsgA; Reviewed
Probab=98.57 E-value=1.3e-07 Score=74.16 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=37.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCCCCcc-------eeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028292 16 LLLIGDSGVGKSTLLLSFTSDTFEELSPTI-------GVDFKIKHVALGGKKMKLAIWDTAGQERFR 75 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (211)
++++|.+|||||||||+|++.......... .++....-+.+.+.. .++||||-..+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 789999999999999999976542222111 133344444544332 488999965554
No 367
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.57 E-value=9.4e-06 Score=64.05 Aligned_cols=161 Identities=17% Similarity=0.207 Sum_probs=95.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCcceeee----------EEEEEEE-CCeEEEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EELSPTIGVDF----------KIKHVAL-GGKKMKLAI 65 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~----------~~~~~~~-~~~~~~~~i 65 (211)
..|=|.|+|+.-+||||||.|+..... ....+..|.+. .-..+.+ ++..+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 346799999999999999999975321 01111222211 2223333 466788999
Q ss_pred EeCCC--------c-----cc------ccccc----------cccc--cCccEEEEEEECC----ChhcHHHHHHHHHHH
Q 028292 66 WDTAG--------Q-----ER------FRTLT----------SSYY--RGAQGIIMVYDVT----RRDTFTNLADIWAKE 110 (211)
Q Consensus 66 ~D~~g--------~-----~~------~~~~~----------~~~~--~~~d~~ilv~d~~----~~~s~~~~~~~~~~~ 110 (211)
+|+-| . ++ |+.-. +..+ +..-++|+--|-+ .++.+..+.+.....
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 99988 0 00 00000 1111 1234566655544 245565555544444
Q ss_pred HHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292 111 IDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 111 ~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 179 (211)
+. .-++|+++++|-.+- ......+.+.++..+++++++++++..- .-+++..-+-+.+++.+
T Consensus 176 Lk----~igKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~~l-~~~DI~~Il~~vLyEFP 237 (492)
T PF09547_consen 176 LK----EIGKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCEQL-REEDITRILEEVLYEFP 237 (492)
T ss_pred HH----HhCCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehHHc-CHHHHHHHHHHHHhcCC
Confidence 44 578999999998873 3334456677788899999999887542 33555555555555543
No 368
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.56 E-value=2.5e-07 Score=72.46 Aligned_cols=82 Identities=21% Similarity=0.090 Sum_probs=54.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-C-CCCCcceeeeEEEEEEECCe---------------EEEEEEEeCCCccc---
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-E-ELSPTIGVDFKIKHVALGGK---------------KMKLAIWDTAGQER--- 73 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~--- 73 (211)
+++.++|.|++|||||++.|++... . ...|....+.....+.+.+. ...+.+.|+||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998765 2 12232222233333344332 24678999999432
Q ss_pred ----ccccccccccCccEEEEEEECC
Q 028292 74 ----FRTLTSSYYRGAQGIIMVYDVT 95 (211)
Q Consensus 74 ----~~~~~~~~~~~~d~~ilv~d~~ 95 (211)
........++++|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223344578899999999985
No 369
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.55 E-value=4.9e-07 Score=68.64 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=57.2
Q ss_pred eEEEEEEEeCCCccccccccc-------cc-----ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 028292 59 KKMKLAIWDTAGQERFRTLTS-------SY-----YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVG 126 (211)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~-------~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (211)
..+.+.|+||||....+...- .. -...|..++|+|++... +.+.. .. .+... . .+--+|+
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~-~f~~~---~-~~~g~Il 224 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AK-VFNEA---V-GLTGIIL 224 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HH-HHHhh---C-CCCEEEE
Confidence 346789999999654332211 11 12378999999997542 22211 21 11111 1 1356889
Q ss_pred eCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 127 NKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 127 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
||.|...... .+.......++|+.+++ +|++++++..
T Consensus 225 TKlDe~~~~G----~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 225 TKLDGTAKGG----IILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred EccCCCCCcc----HHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 9999744332 33445556689988888 7888877643
No 370
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=8.8e-07 Score=71.86 Aligned_cols=135 Identities=13% Similarity=0.116 Sum_probs=80.8
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
..++-+.|+|+||+||||||+.|........ ..+...-...+.+.+.+++|.++|. ...++. ...+-+|.+++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~t----i~~i~GPiTvvsgK~RRiTflEcp~--Dl~~mi-DvaKIaDLVlL 139 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQT----IDEIRGPITVVSGKTRRITFLECPS--DLHQMI-DVAKIADLVLL 139 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhh----hhccCCceEEeecceeEEEEEeChH--HHHHHH-hHHHhhheeEE
Confidence 3567888999999999999999986543110 0011111223456777899999994 233333 33456899999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcccCHHHH------HHHHHH-hCCcEEEeccC
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVVSKKEG------IDFARE-YGCLFLECSAK 159 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~------~~~~~~-~~~~~~~~Sa~ 159 (211)
++|.+-.-..+.+. +++++.. .+.| ++-|++..|+-.... ....+ +.|..- .|+.+|.+|..
T Consensus 140 lIdgnfGfEMETmE--FLnil~~----HGmPrvlgV~ThlDlfk~~s-tLr~~KKrlkhRfWtEiyqGaKlFylsgV 209 (1077)
T COG5192 140 LIDGNFGFEMETME--FLNILIS----HGMPRVLGVVTHLDLFKNPS-TLRSIKKRLKHRFWTEIYQGAKLFYLSGV 209 (1077)
T ss_pred EeccccCceehHHH--HHHHHhh----cCCCceEEEEeecccccChH-HHHHHHHHHhhhHHHHHcCCceEEEeccc
Confidence 99998763333332 5555554 4454 455689999843221 11111 122222 36788888854
No 371
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.54 E-value=8e-08 Score=66.56 Aligned_cols=58 Identities=29% Similarity=0.324 Sum_probs=33.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC---CCCC----CcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF---EELS----PTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (211)
-.++++|++|||||||||.|..... .+.. .-..++.....+.+... ..++||||-..+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence 3678999999999999999998743 1111 11123344444555343 367799995444
No 372
>PRK14974 cell division protein FtsY; Provisional
Probab=98.52 E-value=3.5e-07 Score=71.20 Aligned_cols=95 Identities=16% Similarity=0.144 Sum_probs=55.9
Q ss_pred EEEEEEeCCCccccccc----cccc--ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 61 MKLAIWDTAGQERFRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
+.+.|+||+|....... .... ..+.|..++|+|+.....-......+...+ .+--+|+||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~--------~~~giIlTKlD~~~~ 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV--------GIDGVILTKVDADAK 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC--------CCCEEEEeeecCCCC
Confidence 46899999996542211 1111 225688899999976532221111122111 124588999997443
Q ss_pred cccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 135 RVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
-. -+...+...+.|+.+++ +|++++++..
T Consensus 295 ~G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 295 GG----AALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred cc----HHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 33 23344556689988887 7899887654
No 373
>PRK13796 GTPase YqeH; Provisional
Probab=98.52 E-value=1.7e-07 Score=74.15 Aligned_cols=55 Identities=24% Similarity=0.307 Sum_probs=42.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (211)
.++.|+|.+|||||||||+|+.... ....+.+|+|.....+.+++. ..++||||-
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCc
Confidence 4799999999999999999986432 235567788888777777554 368999995
No 374
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.51 E-value=4e-07 Score=62.38 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=51.9
Q ss_pred ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccC
Q 028292 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK 159 (211)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (211)
..+..+|++++|+|+.++.+.... . +...+... ..++|+++|+||+|+.+... .....+.....+..++++||.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~-~-l~~~l~~~--~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPP-D-LERYVKEV--DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCH-H-HHHHHHhc--cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence 446789999999999988654421 1 23333322 14789999999999854332 223445555667889999998
Q ss_pred CCC
Q 028292 160 TRV 162 (211)
Q Consensus 160 ~~~ 162 (211)
++.
T Consensus 81 ~~~ 83 (141)
T cd01857 81 KEN 83 (141)
T ss_pred CCC
Confidence 875
No 375
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.50 E-value=2.9e-07 Score=72.79 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=43.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (211)
.+|+++|.+|||||||+|+|++... ....+.+|++.....+.+++. +.++||||-.
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCC
Confidence 4899999999999999999997542 345566777777777766332 5689999954
No 376
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.50 E-value=2.8e-07 Score=65.32 Aligned_cols=91 Identities=16% Similarity=0.058 Sum_probs=61.2
Q ss_pred ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028292 76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLE 155 (211)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (211)
......+.++|.+++|+|++++...... . +... ..++|+++|+||+|+.+.... ....++....+..++.
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~-i~~~------~~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~ 80 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-L-LEKI------LGNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLF 80 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-h-hHhH------hcCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEE
Confidence 3445667899999999999876432211 1 1111 135789999999998543211 1122333334457899
Q ss_pred eccCCCCCHHHHHHHHHHHHH
Q 028292 156 CSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 156 ~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
+||+++.|++++...+...+.
T Consensus 81 iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EECCCcccHHHHHHHHHHHHH
Confidence 999999999999999988763
No 377
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.48 E-value=3.2e-07 Score=68.70 Aligned_cols=56 Identities=27% Similarity=0.374 Sum_probs=36.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC---CCC----cceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEE---LSP----TIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (211)
.++++|.+|||||||||+|.+..... ... ...++.....+.+.+ -.++||||-..+
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~ 184 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEF 184 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCcccc
Confidence 67899999999999999999764422 111 112444444455533 268899995443
No 378
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.47 E-value=7.4e-07 Score=68.02 Aligned_cols=92 Identities=18% Similarity=0.094 Sum_probs=62.8
Q ss_pred cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEe
Q 028292 77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLEC 156 (211)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
.....+..+|++++|+|+.++.+.... . +...+ .++|+++|+||+|+.+.... ....+.....+.+++.+
T Consensus 14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~-~-i~~~l------~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~i 83 (276)
T TIGR03596 14 EIKEKLKLVDVVIEVLDARIPLSSRNP-M-IDEIR------GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAI 83 (276)
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCCCCh-h-HHHHH------CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEE
Confidence 345567899999999999887543221 1 22222 35799999999998543211 11122233345688999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcC
Q 028292 157 SAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 157 Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
||+++.|++++.+.+.+.+.+.
T Consensus 84 Sa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 84 NAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred ECCCcccHHHHHHHHHHHHHHh
Confidence 9999999999999998887543
No 379
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.45 E-value=1.1e-06 Score=61.44 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (211)
+++.|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578999999999999999865
No 380
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.42 E-value=1.9e-06 Score=77.76 Aligned_cols=111 Identities=19% Similarity=0.176 Sum_probs=64.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCC-----CCc--ceeeeEEEEEEECCeEEEEEEEeCCCcc--------cccccccc
Q 028292 16 LLLIGDSGVGKSTLLLSFTSDTFEEL-----SPT--IGVDFKIKHVALGGKKMKLAIWDTAGQE--------RFRTLTSS 80 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~ 80 (211)
.+|+|++|+||||||+.- +..+... ..+ .+.+ ......+.+ +-.++||+|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t-~~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGT-RNCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCC-cccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 589999999999999988 4444111 111 1111 122333333 34688999921 12233544
Q ss_pred cc---------cCccEEEEEEECCChh-----cHH----HHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 81 YY---------RGAQGIIMVYDVTRRD-----TFT----NLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 81 ~~---------~~~d~~ilv~d~~~~~-----s~~----~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
++ +-.+++|+++|+.+-. ... .+.. .+..+.... ....|+.|+++|+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~-rl~el~~~l-g~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQ-RLQELREQL-GARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHH-HHHHHHHHh-CCCCCEEEEEecchhhc
Confidence 43 3479999999987532 111 2222 223333333 57899999999999854
No 381
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.38 E-value=2.2e-06 Score=60.36 Aligned_cols=135 Identities=19% Similarity=0.303 Sum_probs=69.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeC-CCccc--------------------
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDT-AGQER-------------------- 73 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~~~-------------------- 73 (211)
||++-|++|+|||||+++++..-.....+..| +....+.-++...-+.+.|. .|...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~ 78 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGG--FYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL 78 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEE--EEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccce--EEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence 68999999999999999998644222223333 44444445555555666666 33110
Q ss_pred --cccc----ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCC-CCCCCcccCHHHHHHHH
Q 028292 74 --FRTL----TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV-DKESERVVSKKEGIDFA 146 (211)
Q Consensus 74 --~~~~----~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~ 146 (211)
+... ....+..+| ++++|---+..+.. .. |.+.+.... ..++|++.++.+. +. ....++.
T Consensus 79 e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~~-~~-F~~~v~~~l-~s~~~vi~vv~~~~~~--------~~l~~i~ 145 (168)
T PF03266_consen 79 ESFEEIGLPALRNALSSSD--LIVIDEIGKMELKS-PG-FREAVEKLL-DSNKPVIGVVHKRSDN--------PFLEEIK 145 (168)
T ss_dssp HHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CH-HHHHHHHHH-CTTSEEEEE--SS--S--------CCHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCC--EEEEeccchhhhcC-HH-HHHHHHHHH-cCCCcEEEEEecCCCc--------HHHHHHH
Confidence 1111 111112344 77778544321111 11 334444333 4778888888877 32 1234455
Q ss_pred HHhCCcEEEeccCCCCCH
Q 028292 147 REYGCLFLECSAKTRVNV 164 (211)
Q Consensus 147 ~~~~~~~~~~Sa~~~~~v 164 (211)
...++.+++++..+.+.+
T Consensus 146 ~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTTSEEEE--TTTCCCH
T ss_pred hCCCcEEEEeChhHHhhH
Confidence 666788999988777655
No 382
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.37 E-value=3.1e-06 Score=65.60 Aligned_cols=155 Identities=15% Similarity=0.134 Sum_probs=89.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCC-------------------CCCcceeee-----EEEEE-------------
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEE-------------------LSPTIGVDF-----KIKHV------------- 54 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-------------------~~~~~~~~~-----~~~~~------------- 54 (211)
-.++|.|+|...+|||||+-.|+.+..+. ..++.|-++ .-..+
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 35799999999999999998887654311 111111111 10000
Q ss_pred -EECCeEEEEEEEeCCCccccccccccccc--CccEEEEEEECCCh---hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292 55 -ALGGKKMKLAIWDTAGQERFRTLTSSYYR--GAQGIIMVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (211)
Q Consensus 55 -~~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (211)
..++..-.++|+|++|++.|-...-..+. -.|...+++-++.. .+-++ +-+.. .-.+|+++|.+|
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEH-----LgLAL----aL~VPVfvVVTK 282 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEH-----LGLAL----ALHVPVFVVVTK 282 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHh-----hhhhh----hhcCcEEEEEEe
Confidence 01222345799999999988755433332 24667777776654 11111 11111 357899999999
Q ss_pred CCCCCCcccCHH--HHHHHHHH--------------------------hCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 129 VDKESERVVSKK--EGIDFARE--------------------------YGCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 129 ~D~~~~~~~~~~--~~~~~~~~--------------------------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
+|+.+.+..... .+..+.++ .-+++|.+|-.+|+++.-+. ..++.+.
T Consensus 283 IDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk-mFLNlls 357 (641)
T KOG0463|consen 283 IDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK-MFLNLLS 357 (641)
T ss_pred eccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH-HHHhhcC
Confidence 998665543222 12222222 13578999999999987543 3344443
No 383
>PRK13796 GTPase YqeH; Provisional
Probab=98.37 E-value=2.8e-06 Score=67.30 Aligned_cols=84 Identities=21% Similarity=0.235 Sum_probs=57.4
Q ss_pred cCcc-EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH----HHHHHhCC---cEE
Q 028292 83 RGAQ-GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGI----DFAREYGC---LFL 154 (211)
Q Consensus 83 ~~~d-~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~~~~~---~~~ 154 (211)
...+ .+++|+|+.+...- |...+..+. .+.|+++|+||+|+.+. ....+.+. .++...++ .++
T Consensus 67 ~~~~~lIv~VVD~~D~~~s------~~~~L~~~~--~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~~~~v~ 137 (365)
T PRK13796 67 GDSDALVVNVVDIFDFNGS------WIPGLHRFV--GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLRPVDVV 137 (365)
T ss_pred cccCcEEEEEEECccCCCc------hhHHHHHHh--CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence 4444 88999999885311 333444333 36799999999999643 23333333 33455565 589
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 028292 155 ECSAKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 155 ~~Sa~~~~~v~~~~~~i~~~~ 175 (211)
.+||+++.|++++++.|.+..
T Consensus 138 ~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 138 LISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred EEECCCCCCHHHHHHHHHHhc
Confidence 999999999999999997653
No 384
>PRK01889 GTPase RsgA; Reviewed
Probab=98.36 E-value=2.7e-06 Score=67.14 Aligned_cols=84 Identities=12% Similarity=0.036 Sum_probs=56.1
Q ss_pred ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR 161 (211)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (211)
..+.|.+++|+++..+-....+.. ++..+. ..+++.++|+||+|+.+......+....+ ..+.+++.+|++++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr-~L~~a~----~~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g 182 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIER-YLALAW----ESGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDG 182 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHH-HHHHHH----HcCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCC
Confidence 578999999999964433333322 444443 46778899999999965421111111111 34678999999999
Q ss_pred CCHHHHHHHHH
Q 028292 162 VNVEQCFEELV 172 (211)
Q Consensus 162 ~~v~~~~~~i~ 172 (211)
.|++++..++.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99999888874
No 385
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.36 E-value=1.7e-06 Score=66.37 Aligned_cols=92 Identities=22% Similarity=0.146 Sum_probs=63.1
Q ss_pred cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEe
Q 028292 77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLEC 156 (211)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
.....+..+|++|+|+|+.++.+.+.. . +...+ .++|+++|+||+|+.+... .+...++....+.+++.+
T Consensus 17 ~l~~~l~~aDvIL~VvDar~p~~~~~~-~-l~~~~------~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~v 86 (287)
T PRK09563 17 EIKENLKLVDVVIEVLDARIPLSSENP-M-IDKII------GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAI 86 (287)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCCCCh-h-HHHHh------CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEE
Confidence 345567899999999999887543221 1 22211 2689999999999853311 112222333446778999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcC
Q 028292 157 SAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 157 Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
||+++.|++++.+.+.+.+.+.
T Consensus 87 Sa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 87 NAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred ECCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999998887553
No 386
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=2.3e-06 Score=63.62 Aligned_cols=59 Identities=31% Similarity=0.574 Sum_probs=43.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCC-----CCCcceeeeEEEEEEECCeEEEEEEEeCCC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEE-----LSPTIGVDFKIKHVALGGKKMKLAIWDTAG 70 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g 70 (211)
-.++|+.+|..|.||||||..|.+-.+.. ..++.........+.-.+....++++||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 56899999999999999999999988732 223333333333444456778889999998
No 387
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.31 E-value=7e-07 Score=69.33 Aligned_cols=61 Identities=25% Similarity=0.364 Sum_probs=51.6
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (211)
..-.+.|++.|+|.|++||||+||+|...........+|.+..-..+.++. .+.|.|.||.
T Consensus 247 ~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 247 GELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred cccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccC---CceeccCCce
Confidence 445688999999999999999999999999888888888877777776555 5788999993
No 388
>PRK00098 GTPase RsgA; Reviewed
Probab=98.29 E-value=1.8e-06 Score=66.58 Aligned_cols=56 Identities=30% Similarity=0.312 Sum_probs=35.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcc-------eeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTI-------GVDFKIKHVALGGKKMKLAIWDTAGQER 73 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (211)
.++++|.+|+|||||+|.|++.......... .++.....+.+.+. ..++||||-..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~ 228 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSS 228 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCc
Confidence 5889999999999999999976542222211 12333333444332 36789999543
No 389
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.28 E-value=1.8e-06 Score=65.45 Aligned_cols=58 Identities=31% Similarity=0.375 Sum_probs=38.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC---CCCC----CcceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF---EELS----PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR 75 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (211)
-.+++|++|||||||+|+|..... .+.. ....++....-+.+.+.+ .|+||||-..+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 567889999999999999986432 1111 222345566666665434 467999966554
No 390
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.26 E-value=2.3e-06 Score=65.69 Aligned_cols=59 Identities=29% Similarity=0.287 Sum_probs=37.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCC-------CcceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS-------PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR 75 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (211)
-.++++|++|+|||||||.|++....... ....++.....+.+.+. ..++||||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 46899999999999999999976542111 11123344444444422 2588999975543
No 391
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=4.3e-05 Score=56.19 Aligned_cols=157 Identities=25% Similarity=0.358 Sum_probs=91.9
Q ss_pred eEEEEEEcCCCC--cHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEE--EEEEeCCCccc-ccccccccccCcc
Q 028292 13 LFKLLLIGDSGV--GKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMK--LAIWDTAGQER-FRTLTSSYYRGAQ 86 (211)
Q Consensus 13 ~~~i~v~G~~~~--GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~i~D~~g~~~-~~~~~~~~~~~~d 86 (211)
...++|.|..|+ ||.+|+.+|....+ ........++++ -.+++++.|. +.+.=.+-..+ +-... ....-..
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~h--gwtid~kyysadi~lcishicde~~lpn~-~~a~pl~ 80 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFH--GWTIDNKYYSADINLCISHICDEKFLPNA-EIAEPLQ 80 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeee--ceEecceeeecceeEEeecccchhccCCc-cccccee
Confidence 356889999999 99999999998888 333333333322 3333433332 22221111111 11111 1122346
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC---------------------------cc---
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE---------------------------RV--- 136 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---------------------------~~--- 136 (211)
++|.|||.+....+..+.. |+.-..... .++ .+.++||.|..+. ..
T Consensus 81 a~vmvfdlse~s~l~alqd-wl~htdins--fdi-llcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgise 156 (418)
T KOG4273|consen 81 AFVMVFDLSEKSGLDALQD-WLPHTDINS--FDI-LLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISE 156 (418)
T ss_pred eEEEEEeccchhhhHHHHh-hcccccccc--chh-heecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccc
Confidence 8899999998877777666 654332211 222 3556899986321 00
Q ss_pred --------------cCHHHHHHHHHHhCCcEEEeccCCC------------CCHHHHHHHHHHHHH
Q 028292 137 --------------VSKKEGIDFAREYGCLFLECSAKTR------------VNVEQCFEELVLKIL 176 (211)
Q Consensus 137 --------------~~~~~~~~~~~~~~~~~~~~Sa~~~------------~~v~~~~~~i~~~~~ 176 (211)
.....+++|+.++++.+++.++-+. .||+.+|..+...+-
T Consensus 157 tegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw 222 (418)
T KOG4273|consen 157 TEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW 222 (418)
T ss_pred cccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence 1122356888899999999988442 488999988876653
No 392
>PRK13695 putative NTPase; Provisional
Probab=98.24 E-value=6.2e-05 Score=53.45 Aligned_cols=80 Identities=10% Similarity=0.006 Sum_probs=45.3
Q ss_pred ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR 161 (211)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (211)
+..+++ +++|--.+. +.....+.+.+.... ..+.|++++.||... .....+.....+..++++ +.
T Consensus 94 l~~~~~--lllDE~~~~--e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~ 158 (174)
T PRK13695 94 LEEADV--IIIDEIGKM--ELKSPKFVKAVEEVL-DSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TP 158 (174)
T ss_pred cCCCCE--EEEECCCcc--hhhhHHHHHHHHHHH-hCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cc
Confidence 345555 677842221 111122444444444 567899999998642 123334455556677777 44
Q ss_pred CCHHHHHHHHHHHHH
Q 028292 162 VNVEQCFEELVLKIL 176 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~ 176 (211)
+|-+++.+.+++.+.
T Consensus 159 ~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 159 ENRDSLPFEILNRLK 173 (174)
T ss_pred hhhhhHHHHHHHHHh
Confidence 555678888877653
No 393
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.21 E-value=2e-05 Score=63.25 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=70.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh------CCC-----CCCC-----------CcceeeeEEEEEEEC------------
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTS------DTF-----EELS-----------PTIGVDFKIKHVALG------------ 57 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~------~~~-----~~~~-----------~~~~~~~~~~~~~~~------------ 57 (211)
++--|+++|.+||||||++..|.. .+. +.+. ...+..+......-+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 356789999999999999999963 111 1111 011111111000000
Q ss_pred -CeEEEEEEEeCCCcccccccc----cc--cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292 58 -GKKMKLAIWDTAGQERFRTLT----SS--YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130 (211)
Q Consensus 58 -~~~~~~~i~D~~g~~~~~~~~----~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (211)
...+.+.|+||+|....+..+ .. ...+.+-+++|+|+.....-......+.. .-.+--+|+||.|
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~--------~~~~~g~IlTKlD 250 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD--------SVDVGSVIITKLD 250 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh--------ccCCcEEEEECcc
Confidence 124688999999955432211 11 12346789999998765433222221221 1234568899999
Q ss_pred CCCCcccCHHHHHHHHHHhCCcEEEec
Q 028292 131 KESERVVSKKEGIDFAREYGCLFLECS 157 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (211)
....-. -+.......+.|+.+++
T Consensus 251 ~~argG----~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 251 GHAKGG----GALSAVAATKSPIIFIG 273 (429)
T ss_pred CCCCcc----HHhhhHHHHCCCeEEEc
Confidence 733221 12334445566655543
No 394
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.18 E-value=1.4e-05 Score=64.18 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=82.2
Q ss_pred eEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh----------cHHHHHHHHHHHHHhhcCCC
Q 028292 49 FKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD----------TFTNLADIWAKEIDLYSTNQ 118 (211)
Q Consensus 49 ~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~ 118 (211)
+....+.+. ....+.++|.+|+...+..|..++.+++++|+|+++++.. .+.+....|..++.... -.
T Consensus 225 i~e~~f~~~-~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~-~~ 302 (389)
T PF00503_consen 225 ITEIDFNFS-GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPW-FK 302 (389)
T ss_dssp EEEEEEEE--TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGG-GT
T ss_pred eeEEEEEee-cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcc-cc
Confidence 334444441 3356888999999999999999999999999999987532 24444443555554333 45
Q ss_pred CCcEEEEEeCCCCC------CC----------cc--cCHHHHHHHHHHh------------CCcEEEeccCCCCCHHHHH
Q 028292 119 DCIKLLVGNKVDKE------SE----------RV--VSKKEGIDFAREY------------GCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 119 ~~p~ivv~nK~D~~------~~----------~~--~~~~~~~~~~~~~------------~~~~~~~Sa~~~~~v~~~~ 168 (211)
+.|++|++||.|+. .. .. -..+.+..+.... .+.+..++|.+...++.+|
T Consensus 303 ~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~ 382 (389)
T PF00503_consen 303 NTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVF 382 (389)
T ss_dssp TSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHH
T ss_pred cCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHH
Confidence 89999999999961 11 11 2344455444321 1245678888888888888
Q ss_pred HHHHHHH
Q 028292 169 EELVLKI 175 (211)
Q Consensus 169 ~~i~~~~ 175 (211)
+.+.+.+
T Consensus 383 ~~v~~~i 389 (389)
T PF00503_consen 383 NAVKDII 389 (389)
T ss_dssp HHHHHHH
T ss_pred HHhcCcC
Confidence 8877643
No 395
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=3.2e-06 Score=65.91 Aligned_cols=158 Identities=17% Similarity=0.155 Sum_probs=94.8
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCC----------------------C--C------CCCCcceeeeEEEEEEECCe
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT----------------------F--E------ELSPTIGVDFKIKHVALGGK 59 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~----------------------~--~------~~~~~~~~~~~~~~~~~~~~ 59 (211)
....+|++++|+..+||||+-..++... + . ......|.+...-.-.++..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 4567899999999999999876665310 0 0 01111122222222222334
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChh---cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 028292 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV 136 (211)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 136 (211)
.-++++.|+||+..|-...-....++|..++|+++...+ -|+.--++--..+.... ..-...|+++||+|-+..+
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt-~gv~~lVv~vNKMddPtvn- 233 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTVN- 233 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh-hccceEEEEEEeccCCccC-
Confidence 456888999999988877777788999999999985432 23332111111121111 3445678889999964322
Q ss_pred cCH-------HHHHHHHHHhC------CcEEEeccCCCCCHHHHHH
Q 028292 137 VSK-------KEGIDFAREYG------CLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 137 ~~~-------~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~~ 169 (211)
++. +....+....+ ..++++|..+|.++.+...
T Consensus 234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 221 12223333322 4689999999999988665
No 396
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.11 E-value=3.2e-06 Score=63.84 Aligned_cols=60 Identities=18% Similarity=0.404 Sum_probs=44.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCCcceeeeEEEE-EEECCeEEEEEEEeCCCc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-----EELSPTIGVDFKIKH-VALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~i~D~~g~ 71 (211)
...+++.|+|.||+|||+|||++-.... ......+|.+..+.. +.+.... .+.++||||-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 3568999999999999999999875433 456666777776666 4444433 5888999993
No 397
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.09 E-value=4.7e-05 Score=57.87 Aligned_cols=94 Identities=24% Similarity=0.162 Sum_probs=67.7
Q ss_pred cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEe
Q 028292 77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLEC 156 (211)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
+.+-.+.+.|-+++++.+.+|+--....+.++-... ..++..++++||+|+....+...++........+.+++.+
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae----~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~ 147 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE----AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV 147 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH----HcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence 334445567888888888888644444333444443 4677778889999997665544456667778889999999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 028292 157 SAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 157 Sa~~~~~v~~~~~~i~~~ 174 (211)
|++++++++++...+...
T Consensus 148 s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 148 SAKNGDGLEELAELLAGK 165 (301)
T ss_pred cCcCcccHHHHHHHhcCC
Confidence 999999999988776554
No 398
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.08 E-value=2.9e-05 Score=62.52 Aligned_cols=87 Identities=16% Similarity=0.139 Sum_probs=48.4
Q ss_pred EEEEEEEeCCCccccccc----ccc--cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 60 KMKLAIWDTAGQERFRTL----TSS--YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~----~~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
.+.+.|+||+|....+.. ... ..-..|.+++|+|+...+ +... +...+.... + ..=+|+||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~-~a~~f~~~v---~-i~giIlTKlD~~~ 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVN-TAKTFNERL---G-LTGVVLTKLDGDA 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHH-HHHHHHhhC---C-CCEEEEeCccCcc
Confidence 356899999995433211 100 123467889999987543 3222 222222111 1 2356799999633
Q ss_pred CcccCHHHHHHHHHHhCCcEEEecc
Q 028292 134 ERVVSKKEGIDFAREYGCLFLECSA 158 (211)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (211)
... .+.......++|+.++..
T Consensus 254 ~~G----~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 254 RGG----AALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ccc----HHHHHHHHHCcCEEEEeC
Confidence 322 255666777888766654
No 399
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=4.4e-05 Score=60.30 Aligned_cols=141 Identities=16% Similarity=0.129 Sum_probs=70.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCCCCCC-Ccce---eeeE---------------EEEE-EE-----------CCeEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-PTIG---VDFK---------------IKHV-AL-----------GGKKM 61 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~~---~~~~---------------~~~~-~~-----------~~~~~ 61 (211)
.-.++++|++|+||||++.+|......... ...+ .+.+ ...+ .+ .....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 347889999999999999999754210000 0000 0000 0000 01 01234
Q ss_pred EEEEEeCCCcccccccc----cc--cccCccEEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 62 KLAIWDTAGQERFRTLT----SS--YYRGAQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 62 ~~~i~D~~g~~~~~~~~----~~--~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
.+.++||+|....+... .. ......-.++|++++.. +....+...|......-.....-+-=+|++|.|-...
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~ 296 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN 296 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence 68999999965433221 11 11223456889998764 3333333222222110000000123577899996332
Q ss_pred cccCHHHHHHHHHHhCCcEEEec
Q 028292 135 RVVSKKEGIDFAREYGCLFLECS 157 (211)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~S 157 (211)
.-.+..+....++|+.+++
T Consensus 297 ----~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 297 ----LGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred ----ccHHHHHHHHHCcCeEEEe
Confidence 2234556667777766664
No 400
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.08 E-value=7.8e-06 Score=60.36 Aligned_cols=66 Identities=20% Similarity=0.299 Sum_probs=47.9
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChh--------------cHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 028292 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD--------------TFTNLADIWAKEIDLYSTNQDCIKLLVG 126 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~--------------s~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (211)
+.++.+|.+|+.+.+..|..++....++|+|...++.. ++.-.+..|.+. ....+.+|+.+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNR-----wL~tisvIlFL 276 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNR-----WLRTISVILFL 276 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhh-----HHhhhheeEEe
Confidence 45788999999999999999999999999999887521 111112222221 13567789999
Q ss_pred eCCCC
Q 028292 127 NKVDK 131 (211)
Q Consensus 127 nK~D~ 131 (211)
||.|+
T Consensus 277 NKqDl 281 (379)
T KOG0099|consen 277 NKQDL 281 (379)
T ss_pred cHHHH
Confidence 99997
No 401
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.07 E-value=3.3e-05 Score=62.40 Aligned_cols=136 Identities=21% Similarity=0.180 Sum_probs=71.5
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCC------C-----CCCCCc-----------ceeeeEEEEEEEC-----------
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDT------F-----EELSPT-----------IGVDFKIKHVALG----------- 57 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~------~-----~~~~~~-----------~~~~~~~~~~~~~----------- 57 (211)
..+..|+++|.+|+||||++..|...- . +.+.+. .+..+.......+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 356789999999999999999886421 0 111110 0111111000000
Q ss_pred CeEEEEEEEeCCCcccccccc----c--ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292 58 GKKMKLAIWDTAGQERFRTLT----S--SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (211)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~----~--~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (211)
-....+.|+||+|........ . ..+...|.+++|+|++... +... ....+.. ..+ ..-+|+||.|.
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~-~a~~F~~---~l~-i~gvIlTKlD~ 244 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKN-QAKAFHE---AVG-IGGIIITKLDG 244 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHH-HHHHHHh---cCC-CCEEEEecccC
Confidence 012368999999965433211 1 1133578899999987753 2222 1111211 111 23577899996
Q ss_pred CCCcccCHHHHHHHHHHhCCcEEEecc
Q 028292 132 ESERVVSKKEGIDFAREYGCLFLECSA 158 (211)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (211)
...-. -+.......+.|+.+++.
T Consensus 245 ~a~~G----~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 245 TAKGG----GALSAVAETGAPIKFIGT 267 (437)
T ss_pred CCccc----HHHHHHHHHCcCEEEEec
Confidence 33221 334455666777666653
No 402
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.07 E-value=1.1e-05 Score=58.43 Aligned_cols=132 Identities=19% Similarity=0.209 Sum_probs=69.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCC-----------C-----------CCcceeeeEEEEEE-------------ECC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEE-----------L-----------SPTIGVDFKIKHVA-------------LGG 58 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~-----------~-----------~~~~~~~~~~~~~~-------------~~~ 58 (211)
.-|+++|++||||||.+-+|....... + ....+..+...... ...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 358899999999999999986432100 0 01111111110000 001
Q ss_pred eEEEEEEEeCCCccccccc----ccccc--cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 59 KKMKLAIWDTAGQERFRTL----TSSYY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
.++.+.|+||+|....... +..++ ...+-+++|.+++....-... +....... + +-=+|++|.|..
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~---~~~~~~~~----~-~~~lIlTKlDet 153 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQ---ALAFYEAF----G-IDGLILTKLDET 153 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHH---HHHHHHHS----S-TCEEEEESTTSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHH---HHHHhhcc----c-CceEEEEeecCC
Confidence 2245899999995543311 11111 146788999999876432221 22222211 1 124779999963
Q ss_pred CCcccCHHHHHHHHHHhCCcEEEec
Q 028292 133 SERVVSKKEGIDFAREYGCLFLECS 157 (211)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~S 157 (211)
... -.+..+....+.|+-.++
T Consensus 154 ~~~----G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 154 ARL----GALLSLAYESGLPISYIT 174 (196)
T ss_dssp STT----HHHHHHHHHHTSEEEEEE
T ss_pred CCc----ccceeHHHHhCCCeEEEE
Confidence 322 235566777788776665
No 403
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.07 E-value=2.2e-05 Score=55.71 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=44.6
Q ss_pred EEEEEEEeCCCcccccc----ccccc--ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 60 KMKLAIWDTAGQERFRT----LTSSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 60 ~~~~~i~D~~g~~~~~~----~~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
.+.+.++|++|...... ....+ ....+.+++|+|....... .. +...+... .+ ..-+|.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~-~~~~~~~~---~~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VN-QAKAFNEA---LG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HH-HHHHHHhh---CC-CCEEEEECCcCCC
Confidence 34578899999643221 11111 1247999999998754322 22 22222221 12 3567789999643
Q ss_pred CcccCHHHHHHHHHHhCCcEEE
Q 028292 134 ERVVSKKEGIDFAREYGCLFLE 155 (211)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~ 155 (211)
... .+...+...++|+..
T Consensus 154 ~~g----~~~~~~~~~~~p~~~ 171 (173)
T cd03115 154 RGG----AALSIRAVTGKPIKF 171 (173)
T ss_pred Ccc----hhhhhHHHHCcCeEe
Confidence 322 223355566666543
No 404
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.05 E-value=2.4e-05 Score=62.70 Aligned_cols=138 Identities=16% Similarity=0.148 Sum_probs=71.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccee------------------eeEEEEEEE------------CCeE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGV------------------DFKIKHVAL------------GGKK 60 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~------------------~~~~~~~~~------------~~~~ 60 (211)
..-.|+++|++|+||||++..|.+... .......+. +.....+.. .-..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 345899999999999999998875321 000000000 000000000 0122
Q ss_pred EEEEEEeCCCcccccc----ccccc--ccCccEEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 61 MKLAIWDTAGQERFRT----LTSSY--YRGAQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~----~~~~~--~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
..+.++||+|...... ....+ ....+-.++|+|++.. .....+. ..+. .. -+-=+|++|.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~-------~~f~-~~-~~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI-------SAYQ-GH-GIHGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH-------HHhc-CC-CCCEEEEEeeeCCC
Confidence 3578999999544221 11111 1223457889998854 3333322 2222 11 22347899999633
Q ss_pred CcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292 134 ERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164 (211)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (211)
.- -.+.......++++.+++ +|.+|
T Consensus 341 ~~----G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 341 SL----GIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred Cc----cHHHHHHHHhCCCEEEEE--CCCCc
Confidence 32 234556677788776664 34444
No 405
>PRK10867 signal recognition particle protein; Provisional
Probab=98.03 E-value=1.4e-05 Score=64.43 Aligned_cols=87 Identities=15% Similarity=0.139 Sum_probs=46.9
Q ss_pred EEEEEEEeCCCccccccc----cccc--ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 60 KMKLAIWDTAGQERFRTL----TSSY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~----~~~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
.+.+.|+||+|....+.. ...+ .-..+.+++|+|....+ +... ....+.. ..+ ..-+|+||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~-~a~~F~~---~~~-i~giIlTKlD~~~ 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVN-TAKAFNE---ALG-LTGVILTKLDGDA 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHH-HHHHHHh---hCC-CCEEEEeCccCcc
Confidence 356899999995432211 0111 12457789999987542 2222 1222221 111 2346789999633
Q ss_pred CcccCHHHHHHHHHHhCCcEEEecc
Q 028292 134 ERVVSKKEGIDFAREYGCLFLECSA 158 (211)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (211)
... .+.......++|+.+++.
T Consensus 255 rgG----~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 255 RGG----AALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ccc----HHHHHHHHHCcCEEEEeC
Confidence 322 255566777888766654
No 406
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=2.7e-05 Score=69.25 Aligned_cols=114 Identities=25% Similarity=0.226 Sum_probs=62.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCC--CCCCCccee---eeEEEEEEECCeEEEEEEEeCCCcc--------ccccccccc-
Q 028292 16 LLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGV---DFKIKHVALGGKKMKLAIWDTAGQE--------RFRTLTSSY- 81 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~- 81 (211)
-+|+|++|+||||++..-- ..| .+...-.+. ......-.+.+ +-.++||.|.. .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 3688999999999886543 222 111111110 01111122222 34678999821 122344433
Q ss_pred --------ccCccEEEEEEECCCh-----hcHHHHHHHH---HHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 82 --------YRGAQGIIMVYDVTRR-----DTFTNLADIW---AKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 82 --------~~~~d~~ilv~d~~~~-----~s~~~~~~~~---~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
.+..+++|+.+|+.+- ..-+.....+ ++.+.... ....|++|++||.|+.+-
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL-~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETL-HARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh-ccCCceEEEEeccccccc
Confidence 3567999999998653 1111111112 33333333 578999999999998553
No 407
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.99 E-value=1.2e-05 Score=57.26 Aligned_cols=83 Identities=23% Similarity=0.258 Sum_probs=42.8
Q ss_pred EEEEEEEeCCCcccccccc--ccc---ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 60 KMKLAIWDTAGQERFRTLT--SSY---YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~--~~~---~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
...+.|+++.|........ ... .-..+.+|.|+|+.+-.........+...+..- =++++||+|+.+.
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~A-------DvIvlnK~D~~~~ 156 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFA-------DVIVLNKIDLVSD 156 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT--------SEEEEE-GGGHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhc-------CEEEEeccccCCh
Confidence 3566778888855444440 000 124588999999977533334433343333321 2688999998444
Q ss_pred cccCHHHHHHHHHHhC
Q 028292 135 RVVSKKEGIDFAREYG 150 (211)
Q Consensus 135 ~~~~~~~~~~~~~~~~ 150 (211)
. ...+...+..+..+
T Consensus 157 ~-~~i~~~~~~ir~ln 171 (178)
T PF02492_consen 157 E-QKIERVREMIRELN 171 (178)
T ss_dssp H---HHHHHHHHHHH-
T ss_pred h-hHHHHHHHHHHHHC
Confidence 3 12234444444443
No 408
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.97 E-value=7.4e-05 Score=58.12 Aligned_cols=85 Identities=12% Similarity=0.141 Sum_probs=45.2
Q ss_pred EEEEEEeCCCcccccccccccc--------cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 61 MKLAIWDTAGQERFRTLTSSYY--------RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
+...++++.|..+...+...++ -..+++|.|+|+.+-.....-.......+.. .=+|++||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------AD~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------CCEEEEeccccC
Confidence 4567888998655444333321 1248899999997642211111111112211 126889999986
Q ss_pred CCcccCHHHHHHHHHHhC--CcEEEe
Q 028292 133 SERVVSKKEGIDFAREYG--CLFLEC 156 (211)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~--~~~~~~ 156 (211)
... +.+.+..+..+ ++++.+
T Consensus 164 ~~~----~~~~~~l~~lnp~a~i~~~ 185 (318)
T PRK11537 164 GEA----EKLRERLARINARAPVYTV 185 (318)
T ss_pred CHH----HHHHHHHHHhCCCCEEEEe
Confidence 532 34445555544 455544
No 409
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.97 E-value=0.00011 Score=57.96 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=78.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccee-eeEEE-----------------EEEE------------CCeEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGV-DFKIK-----------------HVAL------------GGKKM 61 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~-~~~~~-----------------~~~~------------~~~~~ 61 (211)
.=.|+++|++||||||-+-.|...-. ......++. +.+.. .+.+ .-..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 44688999999999999988875433 111122211 11100 0000 12234
Q ss_pred EEEEEeCCCccccccc----cccccc--CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292 62 KLAIWDTAGQERFRTL----TSSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER 135 (211)
Q Consensus 62 ~~~i~D~~g~~~~~~~----~~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 135 (211)
.+.++||.|...++.. ...++. ...-..+|++++.. .+++.. .+..+.. -++ -=+|++|.|-. .
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlke-i~~~f~~----~~i-~~~I~TKlDET--~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKE-IIKQFSL----FPI-DGLIFTKLDET--T 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHH-HHHHhcc----CCc-ceeEEEccccc--C
Confidence 6899999997665532 222222 23445667777665 334433 2222222 111 23678999942 2
Q ss_pred ccCHHHHHHHHHHhCCcEEEec--cCCCCCHHH-HHHHHHHHHHcCCCc
Q 028292 136 VVSKKEGIDFAREYGCLFLECS--AKTRVNVEQ-CFEELVLKILDTPSL 181 (211)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~S--a~~~~~v~~-~~~~i~~~~~~~~~~ 181 (211)
.+- .........+.|+..++ ..=.+++.. --.|+++.+.+....
T Consensus 353 s~G--~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~~ 399 (407)
T COG1419 353 SLG--NLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFAN 399 (407)
T ss_pred chh--HHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhccccc
Confidence 222 23344555566554443 222233321 134666666654443
No 410
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=9.3e-05 Score=60.74 Aligned_cols=131 Identities=17% Similarity=0.206 Sum_probs=68.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-------------CCCC-----------CcceeeeEEEEEE------E-CCeEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-------------EELS-----------PTIGVDFKIKHVA------L-GGKKM 61 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-------------~~~~-----------~~~~~~~~~~~~~------~-~~~~~ 61 (211)
.-.|+|+|++|+||||++..|...-. +.+. ...+..+....-. + ....+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 45788999999999999999875211 0000 0001111100000 0 01246
Q ss_pred EEEEEeCCCccccccc-------ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 62 KLAIWDTAGQERFRTL-------TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 62 ~~~i~D~~g~~~~~~~-------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
.+.|+||+|....+.. .... . ....++|++.+.. ...+.. .+..+. ...+.-+|+||.|...
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa-~-~~a~lLVLpAtss--~~Dl~e----ii~~f~--~~~~~gvILTKlDEt~- 498 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAA-R-QVTSLLVLPANAH--FSDLDE----VVRRFA--HAKPQGVVLTKLDETG- 498 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHh-h-cCCcEEEEECCCC--hhHHHH----HHHHHH--hhCCeEEEEecCcCcc-
Confidence 7899999995432211 1111 1 1245667776642 333322 222222 1245679999999622
Q ss_pred cccCHHHHHHHHHHhCCcEEEec
Q 028292 135 RVVSKKEGIDFAREYGCLFLECS 157 (211)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~S 157 (211)
..-.+.......++++.+++
T Consensus 499 ---~lG~aLsv~~~~~LPI~yvt 518 (559)
T PRK12727 499 ---RFGSALSVVVDHQMPITWVT 518 (559)
T ss_pred ---chhHHHHHHHHhCCCEEEEe
Confidence 23455666777788776665
No 411
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.94 E-value=0.00018 Score=55.91 Aligned_cols=95 Identities=15% Similarity=0.153 Sum_probs=53.7
Q ss_pred EEEEEEeCCCcccccccccccc--------cCccEEEEEEECCChhcHHH-HHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292 61 MKLAIWDTAGQERFRTLTSSYY--------RGAQGIIMVYDVTRRDTFTN-LADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~--------~~~d~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (211)
+...++++.|..........+. -..|++|-|+|+.+-..-.. ....+...+..- =+|++||.|+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A-------D~ivlNK~Dl 157 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA-------DVIVLNKTDL 157 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC-------cEEEEecccC
Confidence 4567888888554432222221 24588999999987533222 222233333221 2689999999
Q ss_pred CCCcccCHHHHHHHHHHhC--CcEEEeccCCCCCHH
Q 028292 132 ESERVVSKKEGIDFAREYG--CLFLECSAKTRVNVE 165 (211)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~ 165 (211)
..... .+......+..+ ++++.++. .+....
T Consensus 158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~ 190 (323)
T COG0523 158 VDAEE--LEALEARLRKLNPRARIIETSY-GDVDLA 190 (323)
T ss_pred CCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHH
Confidence 66653 444455555555 57777776 334443
No 412
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=8.7e-05 Score=58.79 Aligned_cols=133 Identities=18% Similarity=0.207 Sum_probs=69.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCC-----------CcceeeeEEEEEE------E---C-CeE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-----------EELS-----------PTIGVDFKIKHVA------L---G-GKK 60 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-----------~~~~-----------~~~~~~~~~~~~~------~---~-~~~ 60 (211)
.-.|+++|++|+||||++..|...-. +.+. ...+..+....-. + . ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 46899999999999999999964211 0000 0011111100000 0 0 113
Q ss_pred EEEEEEeCCCccccccc----ccccc--cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 61 MKLAIWDTAGQERFRTL----TSSYY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
+.+.|+||+|....... ...++ ...+.+++|+|++... ..+.. + +..+. . -.+-=+|++|.|....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~-i---~~~F~-~-~~idglI~TKLDET~k 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIE-I---ITNFK-D-IHIDGIVFTKFDETAS 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHH-H---HHHhc-C-CCCCEEEEEcccCCCC
Confidence 57899999996442211 11222 2346778889876432 12222 2 22222 1 1223578999996443
Q ss_pred cccCHHHHHHHHHHhCCcEEEec
Q 028292 135 RVVSKKEGIDFAREYGCLFLECS 157 (211)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~S 157 (211)
.. .+...+...++|+..++
T Consensus 393 ~G----~iLni~~~~~lPIsyit 411 (436)
T PRK11889 393 SG----ELLKIPAVSSAPIVLMT 411 (436)
T ss_pred cc----HHHHHHHHHCcCEEEEe
Confidence 22 34456667777766554
No 413
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.87 E-value=7.1e-05 Score=51.65 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=35.0
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130 (211)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (211)
.+.+.|+||+|.. .....++..+|-+|++...+--+.+.-+ ...+ ....-++++||.|
T Consensus 91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~----k~~~------~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAI----KAGI------MEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHh----hhhH------hhhcCEEEEeCCC
Confidence 4678899998853 2223477889999998887722221111 1111 1223478899987
No 414
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.85 E-value=2.5e-05 Score=56.77 Aligned_cols=122 Identities=17% Similarity=0.145 Sum_probs=72.3
Q ss_pred CCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh----------hcHHHHHHHHHHHHHhhcCCCCCcEEEEE
Q 028292 57 GGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKEIDLYSTNQDCIKLLVG 126 (211)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~ivv~ 126 (211)
+-..+.+.+.|.+|+...+..|..++.+.-.+++++.++.. ...++.+. +...+-.+..-.+.++|+.+
T Consensus 195 dl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkA-LFrTIi~yPWF~nssVIlFL 273 (359)
T KOG0085|consen 195 DLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKA-LFRTIITYPWFQNSSVILFL 273 (359)
T ss_pred chhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHH-HHHHHhccccccCCceEEEe
Confidence 33444556778888877777777777776666655544321 11222222 22223334445678999999
Q ss_pred eCCCCCCCc----------------ccCHHHHHHHHHH----hCC------cEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292 127 NKVDKESER----------------VVSKKEGIDFARE----YGC------LFLECSAKTRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 127 nK~D~~~~~----------------~~~~~~~~~~~~~----~~~------~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 179 (211)
||-|+.++. +.+.+.+++|..+ .+- --..+.|.+.+|+.-+|..+...++...
T Consensus 274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 999984421 1223333444433 221 2245678888999999998888877543
No 415
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.80 E-value=0.0046 Score=43.24 Aligned_cols=146 Identities=13% Similarity=0.098 Sum_probs=98.6
Q ss_pred ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEE-eCCCccccccccccccc
Q 028292 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIW-DTAGQERFRTLTSSYYR 83 (211)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-D~~g~~~~~~~~~~~~~ 83 (211)
....+..+.-.|+++|..+.++..|..++...+.. +. . ++..- -.|=-.+..... .
T Consensus 7 ~~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~---------~~-l---------~Vh~a~sLPLp~e~~~lR----p 63 (176)
T PF11111_consen 7 FDKLPELNTATILLVGTEEALLQQLAEAMLEEDKE---------FK-L---------KVHLAKSLPLPSENNNLR----P 63 (176)
T ss_pred cccCCCcceeEEEEecccHHHHHHHHHHHHhhccc---------ee-E---------EEEEeccCCCcccccCCC----c
Confidence 44567778899999999999999999999963321 11 1 11110 111000111112 2
Q ss_pred CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN 163 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (211)
..|.+++++|....-|+..+..-+...-..+- .++- .++++-....+.-.+...++.+++..++.+++.+.-.+.++
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~ff--lGKV-Cfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~ 140 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSFF--LGKV-CFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEG 140 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhhh--ccce-EEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchH
Confidence 46999999999999999888773333322332 2333 44455555556677889999999999999999999999888
Q ss_pred HHHHHHHHHHHHH
Q 028292 164 VEQCFEELVLKIL 176 (211)
Q Consensus 164 v~~~~~~i~~~~~ 176 (211)
...+-+.|++.+.
T Consensus 141 ~~~lAqRLL~~lq 153 (176)
T PF11111_consen 141 RTSLAQRLLRMLQ 153 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777777664
No 416
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.78 E-value=8.5e-06 Score=63.55 Aligned_cols=83 Identities=18% Similarity=0.250 Sum_probs=55.9
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc--ccccccccCccEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR--TLTSSYYRGAQGI 88 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~~~~~~~~~d~~ 88 (211)
...|-|.++|.||+||||+||.|-..+...+.|..|.+.-=..+++ .-+|.++|+||---.. ...... .-++
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvVyps~dset~iv---LkGv 378 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIV---LKGV 378 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCccCCCCCchHHHH---hhce
Confidence 4568999999999999999999999998888888886532222221 1257889999932211 112222 2356
Q ss_pred EEEEECCChhc
Q 028292 89 IMVYDVTRRDT 99 (211)
Q Consensus 89 ilv~d~~~~~s 99 (211)
|=|-.+.+|+.
T Consensus 379 VRVenv~~pe~ 389 (572)
T KOG2423|consen 379 VRVENVKNPED 389 (572)
T ss_pred eeeeecCCHHH
Confidence 77777777643
No 417
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.77 E-value=9.8e-05 Score=50.39 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=59.7
Q ss_pred EEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC
Q 028292 17 LLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR 96 (211)
Q Consensus 17 ~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~ 96 (211)
+.-|..|+|||++--.+...-........-.+.+. ......+.+.++|+|+.. .......+..+|.++++.+.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh
Confidence 34578899999987776532111111111111110 000111678999999743 3334567888999999999864
Q ss_pred hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292 97 RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (211)
Q Consensus 97 ~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (211)
.++..... ..+.+.... ...++.+|+|+.+.
T Consensus 79 -~s~~~~~~-~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 79 -TSITDAYA-LIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred -hHHHHHHH-HHHHHHHhc--CCCCEEEEEeCCCC
Confidence 34444333 333333222 34567899999974
No 418
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.72 E-value=0.00043 Score=49.81 Aligned_cols=112 Identities=13% Similarity=0.163 Sum_probs=60.3
Q ss_pred EEEEEeCCCccccc-------ccccccccC---ccEEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292 62 KLAIWDTAGQERFR-------TLTSSYYRG---AQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130 (211)
Q Consensus 62 ~~~i~D~~g~~~~~-------~~~~~~~~~---~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (211)
.+.++|+||+-+.- ++.+. +.+ .-++++++|..=- +++.-+.. .+..+.... .-.+|.|=|++|+|
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~h-l~~~~F~~c~Vylldsqf~vD~~KfiSG-~lsAlsAMi-~lE~P~INvlsKMD 175 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEH-LKQWNFNVCVVYLLDSQFLVDSTKFISG-CLSALSAMI-SLEVPHINVLSKMD 175 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHH-HhcccCceeEEEEeccchhhhHHHHHHH-HHHHHHHHH-HhcCcchhhhhHHH
Confidence 46788999975431 11111 111 2345666665321 11111111 222222333 46789999999999
Q ss_pred CCCCcc--------------------cC---------HHHHHHHHHHhC-CcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 131 KESERV--------------------VS---------KKEGIDFAREYG-CLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 131 ~~~~~~--------------------~~---------~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
+..... +. .+-+..+..+++ +.|++....+.+.++.++..|-.++.
T Consensus 176 Llk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 176 LLKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred HhhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 843200 00 001122333445 37899999999999988888877664
No 419
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00025 Score=60.84 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=71.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcce---ee---------------eEEEEEE-E-----------CCeEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIG---VD---------------FKIKHVA-L-----------GGKKMK 62 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~---~~---------------~~~~~~~-~-----------~~~~~~ 62 (211)
--|+++|++|+||||++..|..... ......+. .+ .....+. . ....+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 3678999999999999999985321 00000000 00 0000000 0 012246
Q ss_pred EEEEeCCCcccccc----ccccc--ccCccEEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292 63 LAIWDTAGQERFRT----LTSSY--YRGAQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER 135 (211)
Q Consensus 63 ~~i~D~~g~~~~~~----~~~~~--~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 135 (211)
+.|+||+|...... ..... ....+-.++|+|.+.. +.+.++...|.... ..+ +-=+|++|.|....-
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~-----~~~-i~glIlTKLDEt~~~ 339 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGA-----GED-VDGCIITKLDEATHL 339 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcc-----cCC-CCEEEEeccCCCCCc
Confidence 89999999433221 11111 2234567899998753 33333332121110 001 235789999964332
Q ss_pred ccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292 136 VVSKKEGIDFAREYGCLFLECSAKTRVNV 164 (211)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (211)
. .+.......++|+.+++ +|++|
T Consensus 340 G----~iL~i~~~~~lPI~yit--~GQ~V 362 (767)
T PRK14723 340 G----PALDTVIRHRLPVHYVS--TGQKV 362 (767)
T ss_pred c----HHHHHHHHHCCCeEEEe--cCCCC
Confidence 2 34456677788776664 34444
No 420
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.69 E-value=0.00038 Score=43.86 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=44.6
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc-ccccccCccEEEEEEEC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL-TSSYYRGAQGIIMVYDV 94 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~d~~ilv~d~ 94 (211)
+++.|..|+||||+...+...-.. .+ +.. ..++ .+.++|+++....... .......+|.++++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g--~~v--~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RG--KRV--LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CC--CeE--EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999999998764321 11 111 1111 6888999985433321 13455678899999888
Q ss_pred CCh
Q 028292 95 TRR 97 (211)
Q Consensus 95 ~~~ 97 (211)
...
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 654
No 421
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.67 E-value=0.00028 Score=39.68 Aligned_cols=44 Identities=23% Similarity=0.238 Sum_probs=27.1
Q ss_pred CccEEEEEEECCCh--hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292 84 GAQGIIMVYDVTRR--DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130 (211)
Q Consensus 84 ~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (211)
-.+++++++|++.. .+.++... ++..++..- .++|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~-L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLS-LFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHH-HHHHHHHHT--TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHH-HHHHHHHHc--CCCCEEEEEeccC
Confidence 35889999999864 56666666 555555443 4899999999998
No 422
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.67 E-value=0.00025 Score=57.38 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=46.8
Q ss_pred EEEEEEeCCCccccc----cccccccc---CccEEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 61 MKLAIWDTAGQERFR----TLTSSYYR---GAQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~----~~~~~~~~---~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
+.+.|+||+|..... .....++. .-.-.++|++++.. ..+..+. ..+. ..+ +--+|+||.|-.
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~-------~~f~-~~~-~~~vI~TKlDet 370 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIY-------KHFS-RLP-LDGLIFTKLDET 370 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHH-------HHhC-CCC-CCEEEEeccccc
Confidence 568999999964432 11222222 23456778888654 2222222 2221 112 235889999963
Q ss_pred CCcccCHHHHHHHHHHhCCcEEEec
Q 028292 133 SERVVSKKEGIDFAREYGCLFLECS 157 (211)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~S 157 (211)
... -.+.......++|+.+++
T Consensus 371 ~~~----G~i~~~~~~~~lPv~yit 391 (424)
T PRK05703 371 SSL----GSILSLLIESGLPISYLT 391 (424)
T ss_pred ccc----cHHHHHHHHHCCCEEEEe
Confidence 332 246677778888877665
No 423
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=8.1e-05 Score=59.99 Aligned_cols=112 Identities=21% Similarity=0.286 Sum_probs=74.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCC---------CC------CCcceeeeEEEEEEE----------------CCeE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE---------EL------SPTIGVDFKIKHVAL----------------GGKK 60 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~---------~~------~~~~~~~~~~~~~~~----------------~~~~ 60 (211)
+.-|+.|+.+...|||||-..|....-. .+ ....+.++.+..+.. ++..
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 4557889999999999999999743210 00 011122222222111 3556
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhc--HHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT--FTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (211)
+-++++|.||+-+|.+.....++-.|++++|+|.-+.-- -+.+ +.+.+. ..-+| +++.||.|.
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETV---LrQA~~----ERIkP-vlv~NK~DR 162 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETV---LRQAIA----ERIKP-VLVMNKMDR 162 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHH---HHHHHH----hhccc-eEEeehhhH
Confidence 789999999999999999999999999999999877532 2222 333333 22244 677999995
No 424
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.64 E-value=0.00027 Score=45.54 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=47.7
Q ss_pred EEEEc-CCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292 16 LLLIG-DSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (211)
Q Consensus 16 i~v~G-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~ 94 (211)
|.|.| ..|+||||+...+...-.....+. ..+..+.. +.+.++|+|+.... .....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~v-------l~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRV-------LLIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcE-------EEEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence 56666 558999999888764332111111 11112211 67899999985432 233566778999999988
Q ss_pred CChhcHHHHHH
Q 028292 95 TRRDTFTNLAD 105 (211)
Q Consensus 95 ~~~~s~~~~~~ 105 (211)
+ ..++..+..
T Consensus 72 ~-~~s~~~~~~ 81 (104)
T cd02042 72 S-PLDLDGLEK 81 (104)
T ss_pred C-HHHHHHHHH
Confidence 5 445555444
No 425
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.60 E-value=0.00049 Score=54.15 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (211)
.+|.|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 567799999999999999864
No 426
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.58 E-value=0.00032 Score=55.38 Aligned_cols=133 Identities=15% Similarity=0.176 Sum_probs=68.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCC-----------cceeeeEEEEEEE----------C-C
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-----------EELSP-----------TIGVDFKIKHVAL----------G-G 58 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-----------~~~~~-----------~~~~~~~~~~~~~----------~-~ 58 (211)
..-.|+++|++|+||||++..+...-. +.+.. ..+..+... ... . .
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~-~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA-TSPAELEEAVQYMTYV 283 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec-CCHHHHHHHHHHHHhc
Confidence 345688999999999999999974211 11110 011111100 000 0 0
Q ss_pred eEEEEEEEeCCCccccccc----ccccc--cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 59 KKMKLAIWDTAGQERFRTL----TSSYY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
..+.+.|+||+|....... ...+. -..+.+++|.++... ..++.. + +..+. .-.+--+|+||.|..
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~-i---~~~f~--~l~i~glI~TKLDET 355 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMT-I---LPKLA--EIPIDGFIITKMDET 355 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHH-H---HHhcC--cCCCCEEEEEcccCC
Confidence 2367899999996443221 11111 133566677766332 233322 2 22221 112335779999963
Q ss_pred CCcccCHHHHHHHHHHhCCcEEEec
Q 028292 133 SERVVSKKEGIDFAREYGCLFLECS 157 (211)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~S 157 (211)
... =.+.......++|+..++
T Consensus 356 ~~~----G~~Lsv~~~tglPIsylt 376 (407)
T PRK12726 356 TRI----GDLYTVMQETNLPVLYMT 376 (407)
T ss_pred CCc----cHHHHHHHHHCCCEEEEe
Confidence 322 234456677788776665
No 427
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.00042 Score=55.48 Aligned_cols=133 Identities=19% Similarity=0.235 Sum_probs=68.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCC-C-----------CCCC-----------CcceeeeEEEE------EEECCeEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDT-F-----------EELS-----------PTIGVDFKIKH------VALGGKKMKL 63 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~-~-----------~~~~-----------~~~~~~~~~~~------~~~~~~~~~~ 63 (211)
..-|+++|++||||||++..|.... . +.+. ...+....... -.+....+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3468899999999999999997421 0 0000 01111111000 0001234568
Q ss_pred EEEeCCCcccccc----ccccccc-----CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 64 AIWDTAGQERFRT----LTSSYYR-----GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 64 ~i~D~~g~~~~~~----~~~~~~~-----~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
.++||+|...... .+..++. ...-.++|+|++... +.+.. ...... .. -+-=+|++|.|-...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~-~~~~f~----~~-~~~glIlTKLDEt~~ 374 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLT-VLKAYE----SL-NYRRILLTKLDEADF 374 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHH-HHHHhc----CC-CCCEEEEEcccCCCC
Confidence 9999999543211 1111111 234578899987763 12222 222221 11 123478999996333
Q ss_pred cccCHHHHHHHHHHhCCcEEEec
Q 028292 135 RVVSKKEGIDFAREYGCLFLECS 157 (211)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~S 157 (211)
.. .+.......+.|+..++
T Consensus 375 ~G----~il~i~~~~~lPI~ylt 393 (432)
T PRK12724 375 LG----SFLELADTYSKSFTYLS 393 (432)
T ss_pred cc----HHHHHHHHHCCCEEEEe
Confidence 22 24456667788776664
No 428
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.56 E-value=0.00056 Score=46.42 Aligned_cols=26 Identities=38% Similarity=0.588 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF 38 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~ 38 (211)
.-.+++.|++|+|||+|++.+...-.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34689999999999999999997653
No 429
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.56 E-value=0.00032 Score=53.53 Aligned_cols=107 Identities=11% Similarity=0.166 Sum_probs=68.4
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-------------
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF------------- 74 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------- 74 (211)
+...+..+++++|++|-|||++++++....-... ... ...++|..+.+|.....
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DED------------AERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCC------------CccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 4455677899999999999999999998653211 110 12335666676652111
Q ss_pred -----------cccccccccCccEEEEEEECCCh---hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292 75 -----------RTLTSSYYRGAQGIIMVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (211)
Q Consensus 75 -----------~~~~~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (211)
.......++...+=++++|--.. -+...... +++.++...+..++|+|.+|+.
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~-~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQRE-FLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHH-HHHHHHHHhhccCCCeEEeccH
Confidence 11122345566777888885432 23334444 7777777787889999999865
No 430
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.54 E-value=0.00049 Score=56.27 Aligned_cols=150 Identities=15% Similarity=0.190 Sum_probs=74.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcce---ee---------------eEEEEEEE------------CCeEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIG---VD---------------FKIKHVAL------------GGKKMK 62 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~---~~---------------~~~~~~~~------------~~~~~~ 62 (211)
--++++|++||||||++..|..... ......++ .+ .....+.. .-....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d 336 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKH 336 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCC
Confidence 4688999999999999999985321 00000000 00 00000000 011235
Q ss_pred EEEEeCCCccccccc---ccccccC---ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 028292 63 LAIWDTAGQERFRTL---TSSYYRG---AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV 136 (211)
Q Consensus 63 ~~i~D~~g~~~~~~~---~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 136 (211)
+.++||+|....... ....+.. ..-.++|+|.+... .. +.+....+. . ..+--+|+||.|....
T Consensus 337 ~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~----l~~i~~~f~-~-~~~~g~IlTKlDet~~-- 406 (484)
T PRK06995 337 IVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DT----LNEVVQAYR-G-PGLAGCILTKLDEAAS-- 406 (484)
T ss_pred eEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HH----HHHHHHHhc-c-CCCCEEEEeCCCCccc--
Confidence 789999994332210 0001111 12267888887542 22 222222222 1 2234577899996332
Q ss_pred cCHHHHHHHHHHhCCcEEEeccCCCCCH-HHHH----HHHHHHHHc
Q 028292 137 VSKKEGIDFAREYGCLFLECSAKTRVNV-EQCF----EELVLKILD 177 (211)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v-~~~~----~~i~~~~~~ 177 (211)
.-.+.......++++.+++ +|++| +++. ..+++.++.
T Consensus 407 --~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~ 448 (484)
T PRK06995 407 --LGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAFC 448 (484)
T ss_pred --chHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHhc
Confidence 2345566777788876664 45555 4432 234444444
No 431
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.51 E-value=8.2e-05 Score=52.90 Aligned_cols=23 Identities=35% Similarity=0.699 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
++|+|+|+||+||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 432
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.51 E-value=8.3e-05 Score=53.34 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.=|+|+|++|||||||+++|....
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 448999999999999999998753
No 433
>PRK08118 topology modulation protein; Reviewed
Probab=97.50 E-value=9.3e-05 Score=52.16 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999864
No 434
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.50 E-value=0.0001 Score=48.87 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 435
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.50 E-value=0.00086 Score=49.12 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=37.4
Q ss_pred EEEEEeCC-CcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCC-CcEEEEEeCCCC
Q 028292 62 KLAIWDTA-GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQD-CIKLLVGNKVDK 131 (211)
Q Consensus 62 ~~~i~D~~-g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~ 131 (211)
.+.++||- |.+ ..-+.....+|.+|.|+|.+.. ++..... +..+.. .-+ .++.+|+||.|-
T Consensus 135 e~VivDtEAGiE---HfgRg~~~~vD~vivVvDpS~~-sl~taer-i~~L~~----elg~k~i~~V~NKv~e 197 (255)
T COG3640 135 EVVIVDTEAGIE---HFGRGTIEGVDLVIVVVDPSYK-SLRTAER-IKELAE----ELGIKRIFVVLNKVDE 197 (255)
T ss_pred cEEEEecccchh---hhccccccCCCEEEEEeCCcHH-HHHHHHH-HHHHHH----HhCCceEEEEEeeccc
Confidence 34555553 222 2234445678999999999754 3433333 333333 345 899999999995
No 436
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.46 E-value=6.7e-05 Score=52.88 Aligned_cols=47 Identities=28% Similarity=0.321 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKM 61 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (211)
.-++|.|++|+|||||+++|+... ....+...++.....-.++|..|
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY 51 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDY 51 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCcee
Confidence 457899999999999999999876 33223333333334444444443
No 437
>PRK07261 topology modulation protein; Provisional
Probab=97.44 E-value=0.00012 Score=51.76 Aligned_cols=23 Identities=43% Similarity=0.639 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.+|+|+|++|+|||||.+.|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998753
No 438
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.0023 Score=51.16 Aligned_cols=139 Identities=16% Similarity=0.150 Sum_probs=72.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC---------------CCC-----------CCcceeeeEEEEEE-------ECC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF---------------EEL-----------SPTIGVDFKIKHVA-------LGG 58 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~-----------~~~~~~~~~~~~~~-------~~~ 58 (211)
.+-.|+++|++|+||||.+..|...-. +.+ ....+..+...... -..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 346899999999999999998864211 000 00011111110000 011
Q ss_pred eEEEEEEEeCCCcccccc----cccccccC---ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292 59 KKMKLAIWDTAGQERFRT----LTSSYYRG---AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (211)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~----~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (211)
..+.+.|+||+|...... ....++.. -+-.++|+|++... ..+.. .+..+. .--+-=+|++|.|-
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~----~~~~~~--~~~~~~~I~TKlDe 324 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKE----IFHQFS--PFSYKTVIFTKLDE 324 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHH----HHHHhc--CCCCCEEEEEeccC
Confidence 235789999999544321 11112221 22578999998762 22222 223222 11133578999996
Q ss_pred CCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292 132 ESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164 (211)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (211)
..... -+.......++|+..++ +|++|
T Consensus 325 t~~~G----~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 325 TTCVG----NLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred CCcch----HHHHHHHHHCCCEEEEe--CCCCC
Confidence 33322 33455666777776554 45555
No 439
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.44 E-value=0.00018 Score=52.58 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.5
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.....-|+|+|++|||||||++.|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 335567889999999999999999754
No 440
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.41 E-value=0.00013 Score=49.82 Aligned_cols=21 Identities=38% Similarity=0.601 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (211)
|+++|++|||||||++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999853
No 441
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=6.4e-05 Score=55.53 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=90.4
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECC-eEEEEEEEeCCCccccccccccccc----Cc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGG-KKMKLAIWDTAGQERFRTLTSSYYR----GA 85 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~----~~ 85 (211)
.....|++.|..+. |++|++.....-....++...++....-.-.+ ..-..++|+++|......+..--+. +.
T Consensus 43 ~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~ 120 (363)
T KOG3929|consen 43 KFEFFIGSKGNGGK--TTIILRCFDRDEPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT 120 (363)
T ss_pred cceeEEEEecCCce--eEeehhhcCcccCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh
Confidence 35678899987765 99999988766555666665555444433333 2234579999986554433322221 22
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHh----------------------h--------------cCCCCCcEEEEEeCC
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDL----------------------Y--------------STNQDCIKLLVGNKV 129 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~----------------------~--------------~~~~~~p~ivv~nK~ 129 (211)
-.+|++.|++.++.+....+-.+..++. . .....+|+++|+.|.
T Consensus 121 ~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsKY 200 (363)
T KOG3929|consen 121 FSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSKY 200 (363)
T ss_pred hhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccch
Confidence 4679999999986543221112221111 0 022358999999999
Q ss_pred CCCCCccc-----CHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292 130 DKESERVV-----SKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 130 D~~~~~~~-----~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 175 (211)
|.-+..+- .-+..+.++..+|......|++-..-...+-+.+.+..
T Consensus 201 DvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~Hla 251 (363)
T KOG3929|consen 201 DVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINHLA 251 (363)
T ss_pred hhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHHhh
Confidence 97433221 12233445556677666667664333333333333333
No 442
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.35 E-value=0.00013 Score=51.12 Aligned_cols=22 Identities=23% Similarity=0.596 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 443
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.34 E-value=0.00024 Score=40.94 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF 38 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~ 38 (211)
..+|.|+.|+|||||+.++...-+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 488999999999999998875433
No 444
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.33 E-value=0.001 Score=50.49 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=69.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-----------CCC-----------CCcceeeeEEEEEEE-----------CCeE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-----------EEL-----------SPTIGVDFKIKHVAL-----------GGKK 60 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-----------~~~-----------~~~~~~~~~~~~~~~-----------~~~~ 60 (211)
-+|+++|++|+||||++..+...-. +.+ ....+..+... ... ....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence 5899999999999999998864311 000 00011111100 000 0124
Q ss_pred EEEEEEeCCCccccccc----ccccc--cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 61 MKLAIWDTAGQERFRTL----TSSYY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~----~~~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
+.+.|+||+|....... +..++ .+.+-.++|+|++... +++.. .+..+. . -.+-=+|++|.|....
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~----~~~~f~-~-~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIE----IITNFK-D-IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHH----HHHHhC-C-CCCCEEEEEeecCCCC
Confidence 67899999996533211 11111 2346689999987431 12222 222222 1 2233578999996443
Q ss_pred cccCHHHHHHHHHHhCCcEEEec
Q 028292 135 RVVSKKEGIDFAREYGCLFLECS 157 (211)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~S 157 (211)
.. .+.......+.|+..++
T Consensus 227 ~G----~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 227 SG----ELLKIPAVSSAPIVLMT 245 (270)
T ss_pred cc----HHHHHHHHHCcCEEEEe
Confidence 22 34456667777776654
No 445
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.31 E-value=0.00042 Score=50.63 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=17.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFT 34 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~ 34 (211)
+-.+|+|+||+||||..+-+.
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred cceEEEcCCCCCccchhhhHH
Confidence 456899999999999877664
No 446
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.30 E-value=0.00027 Score=41.99 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (211)
|++.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 788999999999999999865
No 447
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.30 E-value=0.0033 Score=44.75 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 68899999999999999998754
No 448
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.29 E-value=0.00024 Score=48.14 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 57899999999999999998754
No 449
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.00021 Score=52.74 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSDTF 38 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~ 38 (211)
|.++|++|||||||+|.+.+-..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999987543
No 450
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.28 E-value=0.00021 Score=51.64 Aligned_cols=24 Identities=42% Similarity=0.524 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF 38 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~ 38 (211)
.++++|++|||||||++.+-+-+.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 588999999999999999987654
No 451
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.28 E-value=0.0016 Score=53.41 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=28.3
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK 131 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 131 (211)
..+|+|=|+-+.-.++.. ..+...++.+......|+|++++-+-.
T Consensus 195 ~~liLveDLPn~~~~d~~-~~f~evL~~y~s~g~~PlIf~iTd~~~ 239 (634)
T KOG1970|consen 195 KKLILVEDLPNQFYRDDS-ETFREVLRLYVSIGRCPLIFIITDSLS 239 (634)
T ss_pred ceEEEeeccchhhhhhhH-HHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 345777777554333322 225666666665677899999987665
No 452
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.26 E-value=0.00078 Score=47.69 Aligned_cols=44 Identities=18% Similarity=0.090 Sum_probs=28.7
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
|++++|+|+.++..... .. +...+. ....++|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~-i~~~~~--l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQ-VEEAVL--QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HH-HHHHHH--hccCCCCEEEEEehhhcCC
Confidence 78999999988743221 11 222221 1135689999999999954
No 453
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.00041 Score=54.28 Aligned_cols=101 Identities=18% Similarity=0.179 Sum_probs=57.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CC---------------------CCCcceeeeEEEEEEE-------------
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EE---------------------LSPTIGVDFKIKHVAL------------- 56 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~---------------------~~~~~~~~~~~~~~~~------------- 56 (211)
++=-|.++|..|+||||.+-.|....- .. ...-.+..++......
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 445688999999999998888864211 00 0011111122111111
Q ss_pred CCeEEEEEEEeCCCccccc-ccccc-----cccCccEEEEEEECCChhcHHHHHHHHHHHHH
Q 028292 57 GGKKMKLAIWDTAGQERFR-TLTSS-----YYRGAQGIIMVYDVTRRDTFTNLADIWAKEID 112 (211)
Q Consensus 57 ~~~~~~~~i~D~~g~~~~~-~~~~~-----~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~ 112 (211)
..+.+.+.|+||+|...-+ ++... -.-..|-+|+|.|++-.+.-+.....+...+.
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vd 241 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVD 241 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhc
Confidence 2455789999999954322 11111 12246899999999987665555444655554
No 454
>PRK04195 replication factor C large subunit; Provisional
Probab=97.24 E-value=0.0032 Score=52.07 Aligned_cols=25 Identities=40% Similarity=0.573 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.-.++|.|++|+||||+++.+.+..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999998754
No 455
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.23 E-value=0.0016 Score=42.22 Aligned_cols=100 Identities=16% Similarity=0.119 Sum_probs=55.0
Q ss_pred EcCCCCcHHHHHHHHhhCCCCC-CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCCh
Q 028292 19 IGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR 97 (211)
Q Consensus 19 ~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~ 97 (211)
-+..|+||||+...|...-... .......+.+ ..... .+.++|+|+... ......+..+|.++++.+.+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~~~-D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~- 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQFGD-DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDL- 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCCCC-CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCCh-
Confidence 3566899999877775432211 1122111111 11111 688999998542 233446678899999988754
Q ss_pred hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292 98 DTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (211)
Q Consensus 98 ~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (211)
.+...... +.+.+..........+.+|+|+
T Consensus 77 ~s~~~~~~-~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKR-LLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHH-HHHHHHHcCCCCcCceEEEecC
Confidence 34555544 4555544331213456677774
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.23 E-value=0.00095 Score=48.44 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~ 37 (211)
|+|.|++|+||||+++.+++..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999988654
No 457
>PRK01889 GTPase RsgA; Reviewed
Probab=97.23 E-value=0.00032 Score=55.53 Aligned_cols=25 Identities=40% Similarity=0.610 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF 38 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~ 38 (211)
-+++++|.+|+|||||++.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3789999999999999999997543
No 458
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.21 E-value=0.00033 Score=46.99 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~ 37 (211)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999999754
No 459
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.20 E-value=0.0038 Score=51.86 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-+++-|++|+||||.++.|....
T Consensus 47 iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 35667999999999999998653
No 460
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.19 E-value=0.00038 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.|.|+|+.|+|||||++.|.+.-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998753
No 461
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.18 E-value=0.00068 Score=52.23 Aligned_cols=143 Identities=16% Similarity=0.179 Sum_probs=77.5
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCC------------------CCCccee--eeEEEEEEE--------------
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEE------------------LSPTIGV--DFKIKHVAL-------------- 56 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~------------------~~~~~~~--~~~~~~~~~-------------- 56 (211)
.+++-|+++|-.|+||||-|-.|...-... +-..++. ....+....
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 458899999999999999998886421100 0000000 011111111
Q ss_pred -CCeEEEEEEEeCCCccccccc-------ccccccCcc-----EEEEEEECCChhcH-HHHHHHHHHHHHhhcCCCCCcE
Q 028292 57 -GGKKMKLAIWDTAGQERFRTL-------TSSYYRGAQ-----GIIMVYDVTRRDTF-TNLADIWAKEIDLYSTNQDCIK 122 (211)
Q Consensus 57 -~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~d-----~~ilv~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~p~ 122 (211)
....+.+.|+||+|.-.-... ....+...+ =++++.|++-.+.- ..++. +...+...
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~-F~eav~l~-------- 287 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI-FNEAVGLD-------- 287 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH-HHHhcCCc--------
Confidence 123356899999994322111 112223333 37888899877533 33333 54444432
Q ss_pred EEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292 123 LLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 123 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
=+|++|.|....-.+.. ..+..+++|+.++-. |++++++.
T Consensus 288 GiIlTKlDgtAKGG~il----~I~~~l~~PI~fiGv--GE~~~DL~ 327 (340)
T COG0552 288 GIILTKLDGTAKGGIIL----SIAYELGIPIKFIGV--GEGYDDLR 327 (340)
T ss_pred eEEEEecccCCCcceee----eHHHHhCCCEEEEeC--CCChhhcc
Confidence 27899999744433322 345667888776643 45555543
No 462
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.18 E-value=0.0038 Score=44.41 Aligned_cols=85 Identities=21% Similarity=0.144 Sum_probs=57.1
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 028292 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS 138 (211)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 138 (211)
..+.+.|+|+|+.... .....+..+|.+++++..+.. +...+.. +...+.. .+.|+.+|+|+.|.... .
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~-~~~~l~~----~~~~~~vV~N~~~~~~~---~ 159 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLER-AVELVRH----FGIPVGVVINKYDLNDE---I 159 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHH-HHHHHHH----cCCCEEEEEeCCCCCcc---h
Confidence 4578999999975322 333456789999999998743 4555544 4444442 35678899999996322 3
Q ss_pred HHHHHHHHHHhCCcEE
Q 028292 139 KKEGIDFAREYGCLFL 154 (211)
Q Consensus 139 ~~~~~~~~~~~~~~~~ 154 (211)
.+++.++....+++++
T Consensus 160 ~~~~~~~~~~~~~~vl 175 (179)
T cd03110 160 AEEIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHHHcCCCeE
Confidence 4566677777888765
No 463
>PRK03839 putative kinase; Provisional
Probab=97.17 E-value=0.00036 Score=49.80 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
+|+|+|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999764
No 464
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.16 E-value=0.00041 Score=51.49 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=26.4
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF 38 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~ 38 (211)
.+.-+..++++|+|.+|||||+|+..++....
T Consensus 7 ~~l~~~~fr~viIG~sGSGKT~li~~lL~~~~ 38 (241)
T PF04665_consen 7 NSLLKDPFRMVIIGKSGSGKTTLIKSLLYYLR 38 (241)
T ss_pred hHhcCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 34455779999999999999999999986543
No 465
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.16 E-value=0.00042 Score=46.64 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF 38 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~ 38 (211)
-+++++|++|+|||++++.+...-.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4689999999999999999987665
No 466
>PLN02200 adenylate kinase family protein
Probab=97.16 E-value=0.00056 Score=50.95 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=24.0
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
......++.|+|+|+|||||||+..+|..
T Consensus 37 ~~~~~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 37 SSKEKTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34445668899999999999999998875
No 467
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.16 E-value=0.00036 Score=51.23 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF 38 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~ 38 (211)
-|.++|++|||||||++.+.+-..
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccC
Confidence 478999999999999999987554
No 468
>PRK06217 hypothetical protein; Validated
Probab=97.15 E-value=0.00043 Score=49.57 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.+|+|+|.+|||||||.+.|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 469
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.14 E-value=0.00041 Score=46.31 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (211)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 470
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.14 E-value=0.00041 Score=47.20 Aligned_cols=21 Identities=52% Similarity=0.773 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (211)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 688999999999999999865
No 471
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.14 E-value=0.00037 Score=52.21 Aligned_cols=20 Identities=40% Similarity=0.597 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 028292 16 LLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~ 35 (211)
++++|+.|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67889999999999999987
No 472
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.14 E-value=0.00042 Score=49.74 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.|+|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999764
No 473
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.12 E-value=0.006 Score=43.20 Aligned_cols=84 Identities=10% Similarity=-0.010 Sum_probs=48.5
Q ss_pred EEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHH
Q 028292 62 KLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKE 141 (211)
Q Consensus 62 ~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 141 (211)
.+.|+|+|+.... .....+..+|.+|++.+.+.. ++..... +...+.. .......+++|+.+..... ..+.
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~-~~~~~~~---~~~~~~~iv~N~~~~~~~~--~~~~ 134 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADR-VKGLLEA---LGIKVVGVIVNRVRPDMVE--GGDM 134 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHH-HHHHHHH---cCCceEEEEEeCCcccccc--hhhH
Confidence 6889999975432 233446788999999988643 3444433 4444443 1224567889999863222 1222
Q ss_pred HHHHHHHhCCcEE
Q 028292 142 GIDFAREYGCLFL 154 (211)
Q Consensus 142 ~~~~~~~~~~~~~ 154 (211)
...+...++.+++
T Consensus 135 ~~~~~~~~~~~v~ 147 (179)
T cd02036 135 VEDIEEILGVPLL 147 (179)
T ss_pred HHHHHHHhCCCEE
Confidence 2344445566654
No 474
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.11 E-value=0.00079 Score=52.57 Aligned_cols=94 Identities=23% Similarity=0.176 Sum_probs=63.2
Q ss_pred eCCCcc-cccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH
Q 028292 67 DTAGQE-RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDF 145 (211)
Q Consensus 67 D~~g~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 145 (211)
+.||+. .+.......+...|+++.|+|+.+|.+... ..+..+. .+.|.++|+||+|+.+... ..+....+
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~------~~l~~~v--~~k~~i~vlNK~DL~~~~~-~~~W~~~~ 86 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN------PELERIV--KEKPKLLVLNKADLAPKEV-TKKWKKYF 86 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC------ccHHHHH--ccCCcEEEEehhhcCCHHH-HHHHHHHH
Confidence 346643 445566677889999999999999975432 2222222 4455599999999955543 34444455
Q ss_pred HHHhCCcEEEeccCCCCCHHHHHH
Q 028292 146 AREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 146 ~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
....+...+.++++.+.+...+..
T Consensus 87 ~~~~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 87 KKEEGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HhcCCCccEEEEeecccCccchHH
Confidence 555567778899988887777664
No 475
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.09 E-value=0.00047 Score=49.09 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.|+|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 476
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.08 E-value=0.00054 Score=46.64 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998854
No 477
>PRK14530 adenylate kinase; Provisional
Probab=97.07 E-value=0.00052 Score=50.46 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
+|+|+|+|||||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999964
No 478
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.07 E-value=0.00069 Score=48.24 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-|+|+|++|+|||||++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999998743
No 479
>PRK13949 shikimate kinase; Provisional
Probab=97.06 E-value=0.00056 Score=48.30 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
+|+|+|++|+|||||.+.|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988753
No 480
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.05 E-value=0.00059 Score=49.01 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.-.++++|++|+|||||++.+++.-
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3478999999999999999998643
No 481
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.04 E-value=0.002 Score=43.39 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999764
No 482
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.04 E-value=0.00068 Score=49.58 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
+.+.|.|.|++|||||||.+.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999864
No 483
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.0005 Score=53.54 Aligned_cols=22 Identities=45% Similarity=0.635 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~ 37 (211)
++++|++|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6788999999999999998754
No 484
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.02 E-value=0.00065 Score=48.29 Aligned_cols=21 Identities=38% Similarity=0.403 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFT 34 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~ 34 (211)
-.++|+|++|+|||||++.++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 378999999999999999886
No 485
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.01 E-value=0.00064 Score=50.40 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=21.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.+++|+|+|+|||||||+.+.|...
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999653
No 486
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.01 E-value=0.00065 Score=43.87 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFT 34 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~ 34 (211)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357899999999999999986
No 487
>PRK14532 adenylate kinase; Provisional
Probab=97.00 E-value=0.00062 Score=48.89 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
++|+++|+|||||||+..+|...
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999753
No 488
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.99 E-value=0.0009 Score=48.89 Aligned_cols=25 Identities=24% Similarity=0.217 Sum_probs=22.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
+..-|+|.|++|+|||||++.+.+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999864
No 489
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.98 E-value=0.0032 Score=47.81 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.|+|.|++|+||||+++.++..-
T Consensus 82 lilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhh
Confidence 48999999999999999998654
No 490
>PRK00625 shikimate kinase; Provisional
Probab=96.97 E-value=0.00069 Score=47.99 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
++|+++|.+||||||+.+.|...
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999643
No 491
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.95 E-value=0.00075 Score=49.68 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++|+|++|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57899999999999999999753
No 492
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.95 E-value=0.00072 Score=49.01 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (211)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 493
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.94 E-value=0.00072 Score=49.59 Aligned_cols=21 Identities=52% Similarity=0.733 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
.|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999987
No 494
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.94 E-value=0.00073 Score=48.39 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
-.|+++|.+||||||+.+.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999984
No 495
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.92 E-value=0.00083 Score=49.16 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999753
No 496
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.00077 Score=48.15 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
-|+++|++|||||||+|-+.+-
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcC
Confidence 4789999999999999999863
No 497
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.91 E-value=0.00082 Score=47.44 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
..-+.|+|.+|+|||||++++...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 446899999999999999999965
No 498
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.91 E-value=0.00087 Score=48.86 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999998753
No 499
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.90 E-value=0.0009 Score=48.17 Aligned_cols=23 Identities=48% Similarity=0.663 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998743
No 500
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.00081 Score=50.21 Aligned_cols=21 Identities=48% Similarity=0.612 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
-+.++|+.|+|||||++.+++
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 367899999999999999998
Done!