Query 028292
Match_columns 211
No_of_seqs 135 out of 1687
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 15:06:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.7E-44 5.7E-49 263.7 17.8 179 1-181 1-180 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 9.9E-37 3.4E-41 221.7 23.1 170 9-180 4-174 (206)
3 3cpj_B GTP-binding protein YPT 100.0 6.6E-37 2.2E-41 225.4 20.1 180 1-182 1-181 (223)
4 2bov_A RAla, RAS-related prote 100.0 1E-36 3.4E-41 221.5 19.0 173 5-179 6-179 (206)
5 3kkq_A RAS-related protein M-R 100.0 2E-35 6.7E-40 210.9 21.5 173 4-178 9-183 (183)
6 1z0f_A RAB14, member RAS oncog 100.0 1.3E-35 4.5E-40 210.8 20.4 174 2-177 4-178 (179)
7 3t5g_A GTP-binding protein RHE 100.0 4.2E-35 1.4E-39 208.8 21.9 171 10-182 3-174 (181)
8 3tkl_A RAS-related protein RAB 100.0 5.6E-35 1.9E-39 210.7 22.3 172 8-181 11-183 (196)
9 2ew1_A RAS-related protein RAB 100.0 4.1E-35 1.4E-39 212.4 20.9 170 7-178 20-190 (201)
10 2gf9_A RAS-related protein RAB 100.0 1E-34 3.4E-39 208.4 22.5 171 6-178 15-186 (189)
11 1x3s_A RAS-related protein RAB 100.0 7.3E-35 2.5E-39 209.8 21.7 176 7-184 9-185 (195)
12 2hup_A RAS-related protein RAB 100.0 2.4E-35 8.2E-40 213.7 19.0 171 7-179 23-195 (201)
13 2a5j_A RAS-related protein RAB 100.0 7.2E-35 2.5E-39 209.5 21.3 171 6-178 14-185 (191)
14 2g6b_A RAS-related protein RAB 100.0 2.2E-34 7.4E-39 204.9 23.0 171 8-180 5-177 (180)
15 2j0v_A RAC-like GTP-binding pr 100.0 2.9E-35 9.8E-40 214.9 18.7 170 10-182 6-185 (212)
16 2fu5_C RAS-related protein RAB 100.0 3.5E-35 1.2E-39 209.6 18.6 167 10-178 5-172 (183)
17 2nzj_A GTP-binding protein REM 100.0 6.4E-35 2.2E-39 206.6 19.4 167 11-178 2-170 (175)
18 3tw8_B RAS-related protein RAB 100.0 2.2E-34 7.5E-39 204.8 21.9 170 8-180 4-174 (181)
19 1z08_A RAS-related protein RAB 100.0 1E-34 3.5E-39 204.6 20.0 166 10-177 3-169 (170)
20 2efe_B Small GTP-binding prote 100.0 2.1E-34 7.2E-39 205.1 21.4 169 8-178 7-176 (181)
21 3q72_A GTP-binding protein RAD 100.0 6.3E-35 2.2E-39 205.0 18.3 164 13-178 2-165 (166)
22 3oes_A GTPase rhebl1; small GT 100.0 5.8E-35 2E-39 211.6 17.8 173 7-181 18-191 (201)
23 3reg_A RHO-like small GTPase; 100.0 5E-34 1.7E-38 205.6 22.6 170 8-180 18-191 (194)
24 1vg8_A RAS-related protein RAB 100.0 3.7E-35 1.3E-39 213.4 16.8 169 10-180 5-178 (207)
25 1zbd_A Rabphilin-3A; G protein 100.0 4.2E-34 1.4E-38 207.3 22.3 168 9-178 4-172 (203)
26 2bme_A RAB4A, RAS-related prot 100.0 2.7E-34 9.4E-39 205.4 20.8 168 9-178 6-174 (186)
27 1r2q_A RAS-related protein RAB 100.0 1.8E-34 6.2E-39 203.2 19.2 164 11-176 4-168 (170)
28 3q3j_B RHO-related GTP-binding 100.0 1.3E-34 4.4E-39 211.8 19.1 175 5-182 19-208 (214)
29 2fg5_A RAB-22B, RAS-related pr 100.0 1E-34 3.6E-39 208.9 18.1 169 8-178 18-187 (192)
30 1z06_A RAS-related protein RAB 100.0 1.4E-34 4.8E-39 207.6 18.7 170 7-177 14-188 (189)
31 1z0j_A RAB-22, RAS-related pro 100.0 4.2E-34 1.4E-38 201.4 20.7 164 11-176 4-168 (170)
32 2oil_A CATX-8, RAS-related pro 100.0 3.1E-34 1.1E-38 206.4 20.5 169 8-178 20-189 (193)
33 3dz8_A RAS-related protein RAB 100.0 7.6E-36 2.6E-40 214.6 11.9 171 6-178 16-187 (191)
34 3bc1_A RAS-related protein RAB 100.0 4.1E-34 1.4E-38 205.7 21.0 173 5-178 3-186 (195)
35 1ek0_A Protein (GTP-binding pr 100.0 2.4E-34 8.1E-39 202.6 19.3 163 12-176 2-168 (170)
36 3cbq_A GTP-binding protein REM 100.0 1.7E-34 5.9E-39 208.3 18.9 172 7-179 17-190 (195)
37 2fn4_A P23, RAS-related protei 100.0 2.4E-34 8.3E-39 204.6 19.4 171 8-180 4-175 (181)
38 2gf0_A GTP-binding protein DI- 100.0 1.2E-34 4E-39 209.4 18.0 170 10-182 5-176 (199)
39 4dsu_A GTPase KRAS, isoform 2B 100.0 5.1E-34 1.8E-38 204.3 21.2 169 11-182 2-171 (189)
40 3q85_A GTP-binding protein REM 100.0 2.2E-34 7.7E-39 202.8 18.8 165 13-178 2-168 (169)
41 2atx_A Small GTP binding prote 100.0 1E-33 3.5E-38 203.9 22.4 171 4-177 9-193 (194)
42 1g16_A RAS-related protein SEC 100.0 4.1E-34 1.4E-38 201.4 19.8 164 12-178 2-166 (170)
43 2il1_A RAB12; G-protein, GDP, 100.0 1.3E-34 4.5E-39 208.4 17.4 170 7-178 20-191 (192)
44 1z2a_A RAS-related protein RAB 100.0 3.6E-34 1.2E-38 201.3 18.7 164 11-177 3-167 (168)
45 2o52_A RAS-related protein RAB 100.0 2.3E-34 7.9E-39 208.4 18.1 169 8-178 20-189 (200)
46 2p5s_A RAS and EF-hand domain 100.0 1.8E-34 6.3E-39 208.7 17.3 169 7-177 22-197 (199)
47 3ihw_A Centg3; RAS, centaurin, 100.0 7.8E-34 2.7E-38 203.0 20.2 165 7-179 14-182 (184)
48 2g3y_A GTP-binding protein GEM 100.0 4.6E-34 1.6E-38 207.9 19.3 169 9-178 33-204 (211)
49 2y8e_A RAB-protein 6, GH09086P 100.0 4.4E-34 1.5E-38 202.9 18.3 166 10-177 11-177 (179)
50 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.9E-33 1E-37 198.4 22.3 167 10-178 4-175 (177)
51 3c5c_A RAS-like protein 12; GD 100.0 4.4E-34 1.5E-38 204.8 18.0 167 8-177 16-186 (187)
52 1u8z_A RAS-related protein RAL 100.0 9.6E-34 3.3E-38 199.0 19.4 164 12-177 3-167 (168)
53 3cph_A RAS-related protein SEC 100.0 1.6E-33 5.4E-38 205.6 20.1 170 6-178 13-183 (213)
54 1c1y_A RAS-related protein RAP 100.0 1.2E-33 4.1E-38 198.5 18.7 163 12-176 2-166 (167)
55 2hxs_A RAB-26, RAS-related pro 100.0 4.4E-34 1.5E-38 202.9 16.5 170 10-180 3-176 (178)
56 4djt_A GTP-binding nuclear pro 100.0 7.6E-34 2.6E-38 208.2 17.7 180 8-189 6-187 (218)
57 2f7s_A C25KG, RAS-related prot 100.0 2E-34 6.7E-39 211.2 14.4 172 7-179 19-201 (217)
58 1kao_A RAP2A; GTP-binding prot 100.0 1.2E-33 4E-38 198.4 17.8 164 12-177 2-166 (167)
59 2a9k_A RAS-related protein RAL 100.0 2E-33 6.7E-38 200.9 19.2 169 8-178 13-182 (187)
60 3con_A GTPase NRAS; structural 100.0 1.1E-32 3.8E-37 197.8 22.4 171 6-179 14-185 (190)
61 1gwn_A RHO-related GTP-binding 100.0 2.2E-33 7.7E-38 203.9 18.2 167 8-177 23-204 (205)
62 1m7b_A RND3/RHOE small GTP-bin 100.0 2.9E-33 1E-37 200.0 18.5 165 10-177 4-183 (184)
63 2atv_A RERG, RAS-like estrogen 100.0 2.3E-33 7.9E-38 202.4 17.6 166 10-178 25-192 (196)
64 2iwr_A Centaurin gamma 1; ANK 100.0 7.8E-33 2.7E-37 196.6 20.0 161 11-178 5-170 (178)
65 2q3h_A RAS homolog gene family 100.0 4.9E-33 1.7E-37 201.4 19.2 169 8-179 15-197 (201)
66 2j1l_A RHO-related GTP-binding 100.0 4.5E-33 1.5E-37 203.7 19.0 168 10-180 31-212 (214)
67 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.1E-32 3.9E-37 196.9 20.7 167 11-180 3-183 (186)
68 1ky3_A GTP-binding protein YPT 100.0 3.5E-33 1.2E-37 198.7 17.2 168 10-178 5-179 (182)
69 2gco_A H9, RHO-related GTP-bin 100.0 3.3E-32 1.1E-36 197.2 22.3 164 11-177 23-200 (201)
70 3clv_A RAB5 protein, putative; 100.0 1.9E-32 6.5E-37 198.5 21.1 163 11-178 5-205 (208)
71 2ce2_X GTPase HRAS; signaling 100.0 4.5E-32 1.5E-36 190.0 21.8 162 13-177 3-165 (166)
72 2yc2_C IFT27, small RAB-relate 100.0 1.9E-33 6.4E-38 204.4 14.4 167 11-178 18-193 (208)
73 2fv8_A H6, RHO-related GTP-bin 100.0 5.6E-32 1.9E-36 196.8 21.5 166 11-179 23-202 (207)
74 2erx_A GTP-binding protein DI- 100.0 8.7E-33 3E-37 194.9 16.8 164 12-177 2-167 (172)
75 3l0i_B RAS-related protein RAB 100.0 5.5E-35 1.9E-39 211.5 5.2 168 9-178 29-197 (199)
76 3gj0_A GTP-binding nuclear pro 100.0 3.4E-33 1.2E-37 205.2 14.8 173 5-182 7-180 (221)
77 2cjw_A GTP-binding protein GEM 100.0 2.9E-32 9.9E-37 196.1 19.0 167 11-178 4-173 (192)
78 1upt_A ARL1, ADP-ribosylation 100.0 1.6E-32 5.6E-37 193.5 16.1 162 10-178 4-170 (171)
79 3bwd_D RAC-like GTP-binding pr 100.0 3.5E-33 1.2E-37 198.9 12.6 164 11-177 6-181 (182)
80 4gzl_A RAS-related C3 botulinu 100.0 3.1E-32 1.1E-36 197.8 17.2 162 11-175 28-203 (204)
81 3t1o_A Gliding protein MGLA; G 100.0 5.2E-33 1.8E-37 200.4 12.4 168 7-179 8-194 (198)
82 4bas_A ADP-ribosylation factor 100.0 2.8E-32 9.6E-37 197.0 15.7 172 4-179 8-191 (199)
83 1m2o_B GTP-binding protein SAR 100.0 2.6E-31 9E-36 190.8 17.6 157 11-174 21-189 (190)
84 1f6b_A SAR1; gtpases, N-termin 100.0 1.2E-31 3.9E-36 193.9 15.6 157 11-174 23-196 (198)
85 1r8s_A ADP-ribosylation factor 100.0 2E-32 6.9E-37 191.8 10.6 157 14-177 1-162 (164)
86 1zd9_A ADP-ribosylation factor 100.0 4.7E-32 1.6E-36 194.4 11.9 164 8-178 17-186 (188)
87 2h17_A ADP-ribosylation factor 100.0 1.8E-31 6.2E-36 190.2 13.9 163 5-174 13-180 (181)
88 1ksh_A ARF-like protein 2; sma 100.0 1.4E-30 4.9E-35 186.2 18.2 161 11-178 16-181 (186)
89 2b6h_A ADP-ribosylation factor 100.0 8.6E-32 2.9E-36 193.7 11.8 162 9-177 25-191 (192)
90 1zj6_A ADP-ribosylation factor 100.0 4.4E-31 1.5E-35 189.1 15.4 166 11-183 14-184 (187)
91 2x77_A ADP-ribosylation factor 100.0 1.1E-31 3.6E-36 192.6 11.8 162 11-179 20-186 (189)
92 2h57_A ADP-ribosylation factor 100.0 1.4E-30 4.9E-35 186.9 17.6 164 7-177 15-187 (190)
93 1fzq_A ADP-ribosylation factor 100.0 5.9E-32 2E-36 192.8 9.9 161 11-178 14-179 (181)
94 2f9l_A RAB11B, member RAS onco 100.0 7E-30 2.4E-34 184.6 20.9 166 11-178 3-169 (199)
95 1oix_A RAS-related protein RAB 100.0 2.5E-29 8.4E-34 180.7 20.1 167 7-175 23-190 (191)
96 1moz_A ARL1, ADP-ribosylation 100.0 3.9E-31 1.3E-35 188.5 9.9 161 11-178 16-181 (183)
97 2wkq_A NPH1-1, RAS-related C3 100.0 2E-29 6.9E-34 195.5 20.0 165 11-178 153-331 (332)
98 3llu_A RAS-related GTP-binding 100.0 7.1E-31 2.4E-35 189.4 11.0 165 5-175 12-195 (196)
99 3th5_A RAS-related C3 botulinu 99.9 2.2E-32 7.4E-37 198.5 0.0 162 11-175 28-203 (204)
100 2zej_A Dardarin, leucine-rich 100.0 1.9E-30 6.4E-35 185.4 9.4 164 13-179 2-180 (184)
101 3o47_A ADP-ribosylation factor 100.0 2.8E-30 9.6E-35 199.9 10.8 161 11-178 163-328 (329)
102 2fh5_B SR-beta, signal recogni 100.0 8.9E-30 3E-34 186.0 10.4 162 11-174 5-213 (214)
103 3lvq_E ARF-GAP with SH3 domain 100.0 2.7E-29 9.1E-34 204.8 12.3 167 11-184 320-491 (497)
104 3c5h_A Glucocorticoid receptor 100.0 1.1E-29 3.7E-34 190.3 8.7 167 7-176 13-254 (255)
105 2lkc_A Translation initiation 100.0 1.3E-27 4.3E-32 169.5 16.8 160 10-180 5-174 (178)
106 1svi_A GTP-binding protein YSX 100.0 1.6E-28 5.4E-33 176.7 11.9 164 4-176 14-194 (195)
107 2wji_A Ferrous iron transport 100.0 1.8E-28 6.1E-33 172.1 11.6 152 13-175 3-163 (165)
108 3iev_A GTP-binding protein ERA 100.0 5.4E-28 1.9E-32 185.5 15.2 178 7-189 4-194 (308)
109 2qu8_A Putative nucleolar GTP- 100.0 6E-28 2E-32 178.0 13.5 165 11-179 27-207 (228)
110 3r7w_A Gtpase1, GTP-binding pr 100.0 3.8E-28 1.3E-32 186.4 12.1 161 12-177 2-181 (307)
111 2cxx_A Probable GTP-binding pr 99.9 5.4E-28 1.8E-32 173.1 9.6 158 14-180 2-187 (190)
112 2dyk_A GTP-binding protein; GT 99.9 1E-27 3.6E-32 167.2 9.1 149 14-175 2-160 (161)
113 3pqc_A Probable GTP-binding pr 99.9 5.2E-27 1.8E-31 168.6 12.7 165 4-177 14-194 (195)
114 2wjg_A FEOB, ferrous iron tran 99.9 4.7E-27 1.6E-31 168.0 12.0 157 12-179 6-171 (188)
115 3a1s_A Iron(II) transport prot 99.9 3.3E-27 1.1E-31 176.8 11.4 157 11-177 3-167 (258)
116 3dpu_A RAB family protein; roc 99.9 1.9E-27 6.6E-32 195.2 9.8 166 9-180 37-211 (535)
117 3r7w_B Gtpase2, GTP-binding pr 99.9 3.7E-28 1.2E-32 185.2 5.0 156 15-178 1-175 (331)
118 2gj8_A MNME, tRNA modification 99.9 2.1E-27 7.4E-32 167.8 7.0 153 12-176 3-165 (172)
119 3b1v_A Ferrous iron uptake tra 99.9 5.7E-27 2E-31 176.5 8.8 155 12-177 2-164 (272)
120 4dhe_A Probable GTP-binding pr 99.9 1.3E-26 4.5E-31 170.1 9.9 169 5-179 21-213 (223)
121 1wf3_A GTP-binding protein; GT 99.9 5.6E-26 1.9E-30 173.5 12.4 166 11-184 5-180 (301)
122 3iby_A Ferrous iron transport 99.9 7.7E-26 2.6E-30 169.1 9.7 150 14-174 2-164 (256)
123 3gee_A MNME, tRNA modification 99.9 2.3E-25 7.7E-30 179.4 12.3 156 12-176 232-397 (476)
124 1nrj_B SR-beta, signal recogni 99.9 3.4E-26 1.2E-30 167.4 6.3 150 5-163 4-170 (218)
125 3k53_A Ferrous iron transport 99.9 5.1E-25 1.7E-29 166.3 12.5 158 12-179 2-168 (271)
126 3i8s_A Ferrous iron transport 99.9 3E-26 1E-30 173.2 5.4 155 12-178 2-170 (274)
127 2hjg_A GTP-binding protein ENG 99.9 8.8E-26 3E-30 181.0 7.9 162 11-180 173-352 (436)
128 4dcu_A GTP-binding protein ENG 99.9 2.3E-25 7.9E-30 179.5 8.2 164 10-181 192-373 (456)
129 1ega_A Protein (GTP-binding pr 99.9 2E-24 6.9E-29 165.1 13.0 168 11-185 6-183 (301)
130 3qq5_A Small GTP-binding prote 99.9 8.7E-26 3E-30 179.0 3.5 162 6-178 27-197 (423)
131 1lnz_A SPO0B-associated GTP-bi 99.9 2.8E-24 9.5E-29 166.4 10.5 160 15-180 160-333 (342)
132 2e87_A Hypothetical protein PH 99.9 1.2E-23 4.2E-28 164.5 14.3 161 11-178 165-337 (357)
133 1xzp_A Probable tRNA modificat 99.9 2.1E-24 7.2E-29 173.9 9.0 152 13-177 243-405 (482)
134 1mky_A Probable GTP-binding pr 99.9 3.3E-24 1.1E-28 172.0 9.2 153 14-178 2-167 (439)
135 2hjg_A GTP-binding protein ENG 99.9 1.8E-24 6.2E-29 173.4 6.8 154 14-178 4-166 (436)
136 3lxx_A GTPase IMAP family memb 99.9 2.7E-23 9.2E-28 154.2 11.9 169 7-180 23-217 (239)
137 3sjy_A Translation initiation 99.9 7.7E-23 2.6E-27 162.4 15.1 166 9-178 4-193 (403)
138 3cb4_D GTP-binding protein LEP 99.9 9.1E-23 3.1E-27 167.9 14.5 160 11-178 2-183 (599)
139 1wb1_A Translation elongation 99.9 1.9E-22 6.6E-27 163.1 15.4 159 7-176 13-188 (482)
140 3geh_A MNME, tRNA modification 99.9 9.5E-24 3.3E-28 169.4 6.7 154 12-179 223-386 (462)
141 2ywe_A GTP-binding protein LEP 99.9 2.2E-22 7.6E-27 165.4 14.5 161 10-178 3-185 (600)
142 1s0u_A EIF-2-gamma, translatio 99.9 1.4E-21 4.7E-26 155.5 18.1 159 11-177 6-198 (408)
143 3j2k_7 ERF3, eukaryotic polype 99.9 4.3E-22 1.5E-26 159.5 15.2 157 8-169 12-217 (439)
144 1mky_A Probable GTP-binding pr 99.9 2E-22 6.9E-27 161.7 12.6 161 11-179 178-357 (439)
145 2xtp_A GTPase IMAP family memb 99.9 7.2E-23 2.5E-27 153.7 8.9 165 9-179 18-210 (260)
146 3lxw_A GTPase IMAP family memb 99.9 3.4E-22 1.1E-26 148.8 12.4 168 10-182 18-213 (247)
147 3p26_A Elongation factor 1 alp 99.9 3E-23 1E-27 168.2 7.3 152 11-166 31-227 (483)
148 3izy_P Translation initiation 99.9 5.9E-24 2E-28 172.6 1.9 159 12-177 3-168 (537)
149 2qtf_A Protein HFLX, GTP-bindi 99.9 1.9E-21 6.5E-26 151.9 15.2 163 14-181 179-358 (364)
150 4dcu_A GTP-binding protein ENG 99.9 7.4E-23 2.5E-27 165.0 7.0 156 11-177 21-185 (456)
151 3t5d_A Septin-7; GTP-binding p 99.9 1.5E-22 5.3E-27 153.0 8.2 158 12-175 7-202 (274)
152 1zun_B Sulfate adenylate trans 99.9 7.9E-22 2.7E-26 158.0 12.5 156 8-168 19-215 (434)
153 1kk1_A EIF2gamma; initiation o 99.9 2.8E-21 9.6E-26 153.8 15.5 161 9-177 6-200 (410)
154 1cip_A Protein (guanine nucleo 99.9 1.9E-22 6.4E-27 156.7 8.4 119 60-179 192-346 (353)
155 2qag_A Septin-2, protein NEDD5 99.9 9.5E-23 3.2E-27 159.4 5.8 165 11-181 35-237 (361)
156 1d2e_A Elongation factor TU (E 99.9 9.9E-22 3.4E-26 155.7 10.7 159 12-176 2-194 (397)
157 3izq_1 HBS1P, elongation facto 99.9 2.2E-22 7.7E-27 166.6 7.0 153 11-167 165-362 (611)
158 3tr5_A RF-3, peptide chain rel 99.9 5.7E-22 2E-26 161.5 9.2 120 9-134 9-149 (528)
159 1jny_A EF-1-alpha, elongation 99.9 2.6E-22 9E-27 160.7 6.9 157 11-169 4-205 (435)
160 1g7s_A Translation initiation 99.9 3.4E-21 1.2E-25 158.8 13.4 157 12-177 4-218 (594)
161 3ohm_A Guanine nucleotide-bind 99.9 6.3E-22 2.2E-26 151.7 8.3 127 51-180 159-321 (327)
162 2c78_A Elongation factor TU-A; 99.9 7.5E-22 2.6E-26 156.9 8.8 161 10-176 8-211 (405)
163 2ged_A SR-beta, signal recogni 99.9 9.5E-22 3.3E-26 141.0 8.3 122 10-136 45-173 (193)
164 2elf_A Protein translation elo 99.9 9.3E-22 3.2E-26 154.1 8.6 146 15-177 23-180 (370)
165 2xtz_A Guanine nucleotide-bind 99.9 4.4E-21 1.5E-25 149.0 11.6 119 59-178 181-346 (354)
166 1r5b_A Eukaryotic peptide chai 99.8 6.1E-22 2.1E-26 159.8 5.3 157 10-168 40-243 (467)
167 1zo1_I IF2, translation initia 99.8 1E-22 3.4E-27 164.2 -0.7 153 11-174 2-164 (501)
168 1pui_A ENGB, probable GTP-bind 99.8 1.8E-20 6.2E-25 136.1 10.3 161 8-177 21-199 (210)
169 3mca_A HBS1, elongation factor 99.8 2.6E-22 8.9E-27 165.8 0.4 149 8-165 172-371 (592)
170 3avx_A Elongation factor TS, e 99.8 1E-20 3.4E-25 163.1 9.9 161 10-176 293-485 (1289)
171 2aka_B Dynamin-1; fusion prote 99.8 3.9E-21 1.3E-25 147.0 5.6 161 9-174 22-250 (299)
172 3def_A T7I23.11 protein; chlor 99.8 4.6E-20 1.6E-24 138.5 11.1 126 11-139 34-171 (262)
173 1f60_A Elongation factor EEF1A 99.8 9.3E-21 3.2E-25 152.5 7.3 152 11-167 5-202 (458)
174 4fid_A G protein alpha subunit 99.8 1.2E-20 4.2E-25 145.0 7.4 118 59-177 159-328 (340)
175 2h5e_A Peptide chain release f 99.8 1.6E-19 5.3E-24 147.3 12.3 118 10-133 10-148 (529)
176 1h65_A Chloroplast outer envel 99.8 5.5E-19 1.9E-23 133.2 13.0 127 11-138 37-173 (270)
177 2dy1_A Elongation factor G; tr 99.8 5E-19 1.7E-23 148.2 13.0 118 9-132 5-139 (665)
178 1udx_A The GTP-binding protein 99.8 8.9E-19 3E-23 138.6 13.3 161 15-180 159-328 (416)
179 1jwy_B Dynamin A GTPase domain 99.8 3.4E-19 1.1E-23 137.2 9.9 166 10-180 21-265 (315)
180 2j69_A Bacterial dynamin-like 99.8 4.3E-19 1.5E-23 149.2 10.8 163 11-178 67-326 (695)
181 1dar_A EF-G, elongation factor 99.8 7.9E-19 2.7E-23 147.5 12.2 119 9-133 8-143 (691)
182 2qnr_A Septin-2, protein NEDD5 99.8 2.8E-19 9.7E-24 136.5 6.2 163 11-180 16-217 (301)
183 2rdo_7 EF-G, elongation factor 99.8 8.9E-18 3.1E-22 141.3 15.7 119 9-133 6-148 (704)
184 2xex_A Elongation factor G; GT 99.8 3.3E-18 1.1E-22 143.8 12.9 119 9-133 6-141 (693)
185 1wxq_A GTP-binding protein; st 99.8 7E-20 2.4E-24 144.6 2.1 83 14-97 1-114 (397)
186 3t34_A Dynamin-related protein 99.8 6.5E-19 2.2E-23 138.0 6.1 157 12-172 33-256 (360)
187 2qag_C Septin-7; cell cycle, c 99.8 3.1E-18 1E-22 135.6 9.6 157 12-175 30-225 (418)
188 1zcb_A G alpha I/13; GTP-bindi 99.7 7.8E-18 2.7E-22 131.2 10.7 131 43-178 187-354 (362)
189 1u0l_A Probable GTPase ENGC; p 99.7 1.9E-18 6.6E-23 132.0 6.2 133 28-173 32-169 (301)
190 1azs_C GS-alpha; complex (lyas 99.7 1.3E-17 4.5E-22 131.0 9.7 124 52-178 210-386 (402)
191 3p32_A Probable GTPase RV1496/ 99.7 1.8E-17 6.2E-22 129.4 5.7 105 60-177 171-284 (355)
192 2wsm_A Hydrogenase expression/ 99.7 5.6E-17 1.9E-21 118.6 7.7 154 12-178 29-215 (221)
193 1jal_A YCHF protein; nucleotid 99.7 1.1E-15 3.9E-20 118.5 15.0 146 14-160 3-240 (363)
194 3vqt_A RF-3, peptide chain rel 99.7 8.9E-17 3E-21 131.7 8.9 119 9-133 27-166 (548)
195 2x2e_A Dynamin-1; nitration, h 99.7 2.8E-18 9.5E-23 134.0 -0.8 158 11-173 29-254 (353)
196 2hf9_A Probable hydrogenase ni 99.7 1.1E-18 3.8E-23 128.1 -3.6 154 12-178 37-225 (226)
197 2qpt_A EH domain-containing pr 99.7 7.8E-16 2.7E-20 126.2 11.7 123 7-135 59-234 (550)
198 1n0u_A EF-2, elongation factor 99.7 3.9E-16 1.3E-20 133.7 10.0 117 10-132 16-163 (842)
199 1yrb_A ATP(GTP)binding protein 99.6 2.8E-15 9.6E-20 112.3 10.9 113 61-177 109-257 (262)
200 2www_A Methylmalonic aciduria 99.6 2E-15 6.7E-20 117.5 9.6 102 61-176 167-278 (349)
201 2dby_A GTP-binding protein; GD 99.6 2.3E-15 8E-20 117.4 8.5 151 14-165 2-250 (368)
202 4a9a_A Ribosome-interacting GT 99.6 9.2E-15 3.1E-19 114.0 11.3 153 11-169 70-240 (376)
203 2p67_A LAO/AO transport system 99.6 1.1E-15 3.6E-20 118.8 4.0 104 60-176 148-260 (341)
204 3j25_A Tetracycline resistance 99.6 6.6E-16 2.3E-20 128.9 2.8 115 13-133 2-133 (638)
205 4fn5_A EF-G 1, elongation fact 99.5 1.4E-13 4.7E-18 116.4 13.0 118 9-132 9-150 (709)
206 3zvr_A Dynamin-1; hydrolase, D 99.5 4.7E-14 1.6E-18 118.5 8.5 159 11-174 49-275 (772)
207 2yv5_A YJEQ protein; hydrolase 99.5 1.9E-13 6.5E-18 104.4 9.1 97 71-172 66-164 (302)
208 2qm8_A GTPase/ATPase; G protei 99.4 3.1E-13 1.1E-17 104.6 9.0 104 60-176 147-260 (337)
209 3l82_B F-box only protein 4; T 99.4 3.5E-13 1.2E-17 95.7 5.2 172 2-179 5-225 (227)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 1.2E-12 4.1E-17 102.5 4.7 88 12-99 21-131 (396)
211 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 1E-10 3.5E-15 91.8 13.6 85 12-96 19-127 (392)
212 3l2o_B F-box only protein 4; s 99.2 7E-12 2.4E-16 93.3 4.7 109 68-179 194-310 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.1 9.5E-12 3.2E-16 97.5 1.4 141 14-164 163-318 (369)
214 2qag_B Septin-6, protein NEDD5 99.0 4.9E-10 1.7E-14 88.6 6.8 140 13-159 42-218 (427)
215 3h2y_A GTPase family protein; 99.0 5.8E-10 2E-14 87.3 6.7 97 70-175 55-158 (368)
216 3h2y_A GTPase family protein; 99.0 2.7E-11 9.1E-16 94.9 -1.2 135 14-158 161-311 (368)
217 2j37_W Signal recognition part 99.0 6.1E-10 2.1E-14 90.1 6.6 151 11-174 99-310 (504)
218 1tq4_A IIGP1, interferon-induc 99.0 3.5E-09 1.2E-13 83.7 9.8 162 12-182 68-258 (413)
219 3sop_A Neuronal-specific septi 99.0 2.3E-09 7.8E-14 80.4 8.2 137 13-156 2-179 (270)
220 1puj_A YLQF, conserved hypothe 98.9 1.8E-09 6.2E-14 81.4 5.0 59 11-72 118-176 (282)
221 3ec1_A YQEH GTPase; atnos1, at 98.9 1.6E-09 5.6E-14 84.8 4.6 98 70-176 57-161 (369)
222 1puj_A YLQF, conserved hypothe 98.8 6.2E-09 2.1E-13 78.5 6.0 102 66-177 4-106 (282)
223 3cnl_A YLQF, putative uncharac 98.8 1.9E-09 6.4E-14 80.5 2.7 57 14-73 100-156 (262)
224 3dm5_A SRP54, signal recogniti 98.6 9.4E-08 3.2E-12 76.0 6.2 140 12-165 99-279 (443)
225 1t9h_A YLOQ, probable GTPase E 98.5 1.1E-07 3.9E-12 72.3 4.0 90 76-169 78-169 (307)
226 1f5n_A Interferon-induced guan 98.4 2.7E-07 9.3E-12 76.0 4.8 63 11-73 36-103 (592)
227 3cnl_A YLQF, putative uncharac 98.4 1.7E-07 5.7E-12 69.9 3.1 93 68-173 4-97 (262)
228 2v3c_C SRP54, signal recogniti 98.3 7.3E-07 2.5E-11 71.1 5.5 132 13-157 99-272 (432)
229 3kl4_A SRP54, signal recogniti 98.3 2.8E-07 9.4E-12 73.3 2.2 139 12-164 96-277 (433)
230 1j8m_F SRP54, signal recogniti 98.2 6.5E-07 2.2E-11 67.9 3.3 92 60-166 180-280 (297)
231 3szr_A Interferon-induced GTP- 98.1 3.1E-06 1.1E-10 70.5 5.3 23 15-37 47-69 (608)
232 2rcn_A Probable GTPase ENGC; Y 98.0 1.6E-05 5.3E-10 61.7 7.3 85 81-170 127-212 (358)
233 3e70_C DPA, signal recognition 98.0 5.8E-06 2E-10 63.6 4.8 141 12-166 128-309 (328)
234 1bif_A 6-phosphofructo-2-kinas 98.0 2.2E-07 7.6E-12 75.0 -3.9 101 11-113 37-147 (469)
235 3q5d_A Atlastin-1; G protein, 97.9 1.1E-05 3.7E-10 64.4 4.9 26 11-36 65-90 (447)
236 2xxa_A Signal recognition part 97.8 0.00014 4.8E-09 58.0 9.0 132 12-156 99-273 (433)
237 1ye8_A Protein THEP1, hypothet 97.6 3.6E-05 1.2E-09 53.8 3.2 24 14-37 1-24 (178)
238 1t9h_A YLOQ, probable GTPase E 97.5 4.2E-05 1.4E-09 58.1 2.3 23 15-37 175-197 (307)
239 1kgd_A CASK, peripheral plasma 97.4 7.3E-05 2.5E-09 52.3 3.1 22 15-36 7-28 (180)
240 1lvg_A Guanylate kinase, GMP k 97.4 8.2E-05 2.8E-09 52.9 3.1 21 15-35 6-26 (198)
241 3a00_A Guanylate kinase, GMP k 97.3 0.00011 3.7E-09 51.7 3.0 21 16-36 4-24 (186)
242 3tr0_A Guanylate kinase, GMP k 97.3 0.00012 4.2E-09 52.0 3.1 22 15-36 9-30 (205)
243 2yv5_A YJEQ protein; hydrolase 97.3 0.00047 1.6E-08 52.4 6.4 22 15-37 167-188 (302)
244 1zp6_A Hypothetical protein AT 97.3 0.00013 4.6E-09 51.2 3.0 23 14-36 10-32 (191)
245 2ffh_A Protein (FFH); SRP54, s 97.3 0.00061 2.1E-08 54.1 7.0 85 61-157 181-271 (425)
246 1s96_A Guanylate kinase, GMP k 97.3 0.00014 4.8E-09 52.6 3.1 23 14-36 17-39 (219)
247 1znw_A Guanylate kinase, GMP k 97.3 0.00014 4.8E-09 52.0 3.0 23 15-37 22-44 (207)
248 1z6g_A Guanylate kinase; struc 97.2 0.00017 5.8E-09 52.1 3.0 22 15-36 25-46 (218)
249 1ex7_A Guanylate kinase; subst 97.2 0.00019 6.6E-09 50.5 3.1 21 16-36 4-24 (186)
250 4gp7_A Metallophosphoesterase; 97.2 0.00015 5.3E-09 50.2 2.6 20 15-34 11-30 (171)
251 1htw_A HI0065; nucleotide-bind 97.2 0.00021 7E-09 48.9 3.0 23 15-37 35-57 (158)
252 3ney_A 55 kDa erythrocyte memb 97.2 0.00023 7.7E-09 50.5 3.3 25 12-36 18-42 (197)
253 3tau_A Guanylate kinase, GMP k 97.2 0.0002 7E-09 51.2 3.1 24 14-37 9-32 (208)
254 3c8u_A Fructokinase; YP_612366 97.2 0.00022 7.7E-09 51.0 3.0 26 11-36 20-45 (208)
255 3cwq_A Para family chromosome 97.1 0.00036 1.2E-08 50.0 4.0 86 60-154 67-153 (209)
256 3tif_A Uncharacterized ABC tra 97.1 0.00023 7.7E-09 52.1 2.9 23 15-37 33-55 (235)
257 2bdt_A BH3686; alpha-beta prot 97.1 0.00028 9.6E-09 49.5 3.0 21 15-35 4-24 (189)
258 2pcj_A ABC transporter, lipopr 97.1 0.00026 9E-09 51.3 2.9 23 15-37 32-54 (224)
259 2qor_A Guanylate kinase; phosp 97.1 0.0003 1E-08 50.1 3.1 25 12-36 11-35 (204)
260 2cdn_A Adenylate kinase; phosp 97.1 0.00035 1.2E-08 49.6 3.4 28 8-35 15-42 (201)
261 2onk_A Molybdate/tungstate ABC 97.1 0.00031 1.1E-08 51.5 3.1 23 15-37 26-48 (240)
262 1kag_A SKI, shikimate kinase I 97.1 0.00033 1.1E-08 48.3 3.1 23 14-36 5-27 (173)
263 2rcn_A Probable GTPase ENGC; Y 97.1 0.00032 1.1E-08 54.4 3.3 23 15-37 217-239 (358)
264 2j41_A Guanylate kinase; GMP, 97.1 0.00032 1.1E-08 49.8 3.0 24 14-37 7-30 (207)
265 1sgw_A Putative ABC transporte 97.1 0.00033 1.1E-08 50.4 3.0 23 15-37 37-59 (214)
266 2i3b_A HCR-ntpase, human cance 97.0 0.00032 1.1E-08 49.4 2.9 22 15-36 3-24 (189)
267 1b0u_A Histidine permease; ABC 97.0 0.00033 1.1E-08 52.1 3.0 23 15-37 34-56 (262)
268 1ly1_A Polynucleotide kinase; 97.0 0.00045 1.5E-08 47.9 3.5 22 14-35 3-24 (181)
269 4eun_A Thermoresistant glucoki 97.0 0.00037 1.3E-08 49.5 3.1 22 14-35 30-51 (200)
270 3gfo_A Cobalt import ATP-bindi 97.0 0.00035 1.2E-08 52.3 3.0 23 15-37 36-58 (275)
271 3ec2_A DNA replication protein 97.0 0.00034 1.2E-08 48.7 2.8 24 14-37 39-62 (180)
272 3lw7_A Adenylate kinase relate 97.0 0.00038 1.3E-08 47.9 3.1 20 14-33 2-21 (179)
273 2bbw_A Adenylate kinase 4, AK4 97.0 0.00041 1.4E-08 50.9 3.3 22 13-34 27-48 (246)
274 1g6h_A High-affinity branched- 97.0 0.00036 1.2E-08 51.7 2.9 23 15-37 35-57 (257)
275 2cbz_A Multidrug resistance-as 97.0 0.0004 1.4E-08 50.8 3.2 23 15-37 33-55 (237)
276 3asz_A Uridine kinase; cytidin 97.0 0.00044 1.5E-08 49.4 3.4 25 12-36 5-29 (211)
277 3fb4_A Adenylate kinase; psych 97.0 0.00042 1.4E-08 49.7 3.1 22 14-35 1-22 (216)
278 2olj_A Amino acid ABC transpor 97.0 0.00039 1.3E-08 51.7 3.0 23 15-37 52-74 (263)
279 3kb2_A SPBC2 prophage-derived 97.0 0.00046 1.6E-08 47.4 3.2 22 15-36 3-24 (173)
280 4g1u_C Hemin import ATP-bindin 97.0 0.00038 1.3E-08 51.8 2.9 23 15-37 39-61 (266)
281 3dl0_A Adenylate kinase; phosp 97.0 0.00044 1.5E-08 49.6 3.1 22 14-35 1-22 (216)
282 1mv5_A LMRA, multidrug resista 97.0 0.00045 1.5E-08 50.7 3.2 23 15-37 30-52 (243)
283 2pze_A Cystic fibrosis transme 97.0 0.00046 1.6E-08 50.2 3.2 23 15-37 36-58 (229)
284 3sr0_A Adenylate kinase; phosp 97.0 0.00046 1.6E-08 49.4 3.1 22 14-35 1-22 (206)
285 1vpl_A ABC transporter, ATP-bi 97.0 0.00041 1.4E-08 51.3 3.0 23 15-37 43-65 (256)
286 1ji0_A ABC transporter; ATP bi 97.0 0.00041 1.4E-08 50.8 2.9 23 15-37 34-56 (240)
287 2ff7_A Alpha-hemolysin translo 97.0 0.00046 1.6E-08 50.8 3.2 23 15-37 37-59 (247)
288 3b85_A Phosphate starvation-in 97.0 0.00038 1.3E-08 49.9 2.7 22 15-36 24-45 (208)
289 2qi9_C Vitamin B12 import ATP- 97.0 0.00043 1.5E-08 51.0 3.0 23 15-37 28-50 (249)
290 2eyu_A Twitching motility prot 97.0 0.00043 1.5E-08 51.4 3.0 22 15-36 27-48 (261)
291 2rhm_A Putative kinase; P-loop 97.0 0.00059 2E-08 47.9 3.6 24 12-35 4-27 (193)
292 3cm0_A Adenylate kinase; ATP-b 97.0 0.00062 2.1E-08 47.5 3.7 24 12-35 3-26 (186)
293 3iij_A Coilin-interacting nucl 97.0 0.00045 1.5E-08 48.1 2.9 25 11-35 9-33 (180)
294 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00047 1.6E-08 50.9 3.1 22 15-36 31-52 (250)
295 1ukz_A Uridylate kinase; trans 96.9 0.00068 2.3E-08 48.1 3.8 25 11-35 13-37 (203)
296 3tlx_A Adenylate kinase 2; str 96.9 0.00064 2.2E-08 49.9 3.7 25 11-35 27-51 (243)
297 1knq_A Gluconate kinase; ALFA/ 96.9 0.00064 2.2E-08 47.0 3.6 22 14-35 9-30 (175)
298 2zu0_C Probable ATP-dependent 96.9 0.00049 1.7E-08 51.3 3.1 22 15-36 48-69 (267)
299 1np6_A Molybdopterin-guanine d 96.9 0.00054 1.9E-08 47.6 3.1 23 14-36 7-29 (174)
300 2ihy_A ABC transporter, ATP-bi 96.9 0.00053 1.8E-08 51.4 3.2 23 15-37 49-71 (279)
301 3vaa_A Shikimate kinase, SK; s 96.9 0.00058 2E-08 48.4 3.3 23 13-35 25-47 (199)
302 2ghi_A Transport protein; mult 96.9 0.00053 1.8E-08 50.9 3.2 22 15-36 48-69 (260)
303 2v9p_A Replication protein E1; 96.9 0.00054 1.9E-08 52.0 3.2 22 15-36 128-149 (305)
304 2nq2_C Hypothetical ABC transp 96.9 0.00052 1.8E-08 50.7 2.9 23 15-37 33-55 (253)
305 3t61_A Gluconokinase; PSI-biol 96.9 0.00056 1.9E-08 48.5 3.0 23 14-36 19-41 (202)
306 2ixe_A Antigen peptide transpo 96.9 0.00057 2E-08 51.0 3.2 23 15-37 47-69 (271)
307 2if2_A Dephospho-COA kinase; a 96.9 0.00058 2E-08 48.5 3.1 22 14-35 2-23 (204)
308 2jaq_A Deoxyguanosine kinase; 96.9 0.00061 2.1E-08 48.2 3.2 21 15-35 2-22 (205)
309 1u0l_A Probable GTPase ENGC; p 96.9 0.0005 1.7E-08 52.2 2.8 24 15-38 171-194 (301)
310 2yz2_A Putative ABC transporte 96.9 0.00054 1.8E-08 51.0 2.9 23 15-37 35-57 (266)
311 1qhx_A CPT, protein (chloramph 96.9 0.00062 2.1E-08 47.2 3.1 23 14-36 4-26 (178)
312 1cke_A CK, MSSA, protein (cyti 96.9 0.00062 2.1E-08 49.1 3.2 22 14-35 6-27 (227)
313 1nks_A Adenylate kinase; therm 96.9 0.00074 2.5E-08 47.3 3.4 22 14-35 2-23 (194)
314 1jjv_A Dephospho-COA kinase; P 96.8 0.00078 2.7E-08 47.9 3.5 22 14-35 3-24 (206)
315 3lnc_A Guanylate kinase, GMP k 96.8 0.00036 1.2E-08 50.7 1.7 22 15-36 29-51 (231)
316 2pjz_A Hypothetical protein ST 96.8 0.00068 2.3E-08 50.4 3.2 22 15-36 32-53 (263)
317 1e4v_A Adenylate kinase; trans 96.8 0.00066 2.3E-08 48.7 3.1 22 14-35 1-22 (214)
318 3aez_A Pantothenate kinase; tr 96.8 0.00086 3E-08 51.1 3.8 27 10-36 87-113 (312)
319 1uj2_A Uridine-cytidine kinase 96.8 0.00076 2.6E-08 49.7 3.5 29 7-35 16-44 (252)
320 2ehv_A Hypothetical protein PH 96.8 0.00065 2.2E-08 49.7 3.1 20 15-34 32-51 (251)
321 2yvu_A Probable adenylyl-sulfa 96.8 0.001 3.4E-08 46.5 3.9 26 11-36 11-36 (186)
322 2qt1_A Nicotinamide riboside k 96.8 0.00094 3.2E-08 47.5 3.8 27 10-36 18-44 (207)
323 1nn5_A Similar to deoxythymidy 96.8 0.00071 2.4E-08 48.3 3.1 25 11-35 7-31 (215)
324 2v54_A DTMP kinase, thymidylat 96.8 0.00085 2.9E-08 47.5 3.5 24 13-36 4-27 (204)
325 3uie_A Adenylyl-sulfate kinase 96.8 0.0007 2.4E-08 48.0 3.0 25 12-36 24-48 (200)
326 4a74_A DNA repair and recombin 96.8 0.00067 2.3E-08 49.0 3.0 22 15-36 27-48 (231)
327 3umf_A Adenylate kinase; rossm 96.8 0.00099 3.4E-08 48.0 3.8 24 12-35 28-51 (217)
328 2wwf_A Thymidilate kinase, put 96.8 0.00089 3.1E-08 47.7 3.5 24 12-35 9-32 (212)
329 1ak2_A Adenylate kinase isoenz 96.8 0.0008 2.7E-08 49.0 3.3 25 11-35 14-38 (233)
330 1aky_A Adenylate kinase; ATP:A 96.8 0.00077 2.6E-08 48.5 3.2 23 13-35 4-26 (220)
331 2kjq_A DNAA-related protein; s 96.8 0.00053 1.8E-08 46.4 2.1 23 15-37 38-60 (149)
332 1y63_A LMAJ004144AAA protein; 96.8 0.00086 3E-08 46.9 3.3 25 12-36 9-33 (184)
333 1kht_A Adenylate kinase; phosp 96.8 0.00085 2.9E-08 46.9 3.2 22 14-35 4-25 (192)
334 1tev_A UMP-CMP kinase; ploop, 96.8 0.001 3.4E-08 46.7 3.5 23 13-35 3-25 (196)
335 1gvn_B Zeta; postsegregational 96.8 0.00093 3.2E-08 50.3 3.5 25 11-35 31-55 (287)
336 2x8a_A Nuclear valosin-contain 96.8 0.00078 2.7E-08 50.4 3.0 21 16-36 47-67 (274)
337 1zd8_A GTP:AMP phosphotransfer 96.8 0.00083 2.8E-08 48.6 3.1 24 12-35 6-29 (227)
338 2plr_A DTMP kinase, probable t 96.8 0.001 3.5E-08 47.3 3.5 23 13-35 4-26 (213)
339 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00076 2.6E-08 52.3 3.0 23 15-37 32-54 (359)
340 3trf_A Shikimate kinase, SK; a 96.7 0.00097 3.3E-08 46.5 3.3 22 14-35 6-27 (185)
341 2f1r_A Molybdopterin-guanine d 96.7 0.00047 1.6E-08 47.8 1.6 22 15-36 4-25 (171)
342 1lw7_A Transcriptional regulat 96.7 0.00078 2.7E-08 52.5 3.0 25 13-37 170-194 (365)
343 3tqc_A Pantothenate kinase; bi 96.7 0.0011 3.9E-08 50.6 3.8 26 10-35 89-114 (321)
344 2bbs_A Cystic fibrosis transme 96.7 0.00088 3E-08 50.5 3.1 23 15-37 66-88 (290)
345 3jvv_A Twitching mobility prot 96.7 0.00094 3.2E-08 51.9 3.3 22 15-36 125-146 (356)
346 1z47_A CYSA, putative ABC-tran 96.7 0.00089 3.1E-08 51.9 3.1 23 15-37 43-65 (355)
347 2jeo_A Uridine-cytidine kinase 96.7 0.0011 3.8E-08 48.6 3.5 24 12-35 24-47 (245)
348 1ixz_A ATP-dependent metallopr 96.7 0.00097 3.3E-08 49.1 3.1 21 16-36 52-72 (254)
349 1zak_A Adenylate kinase; ATP:A 96.7 0.00081 2.8E-08 48.5 2.6 23 13-35 5-27 (222)
350 2pt5_A Shikimate kinase, SK; a 96.7 0.0011 3.8E-08 45.4 3.2 22 14-35 1-22 (168)
351 1jbk_A CLPB protein; beta barr 96.7 0.0011 3.9E-08 46.0 3.3 23 14-36 44-66 (195)
352 2yyz_A Sugar ABC transporter, 96.7 0.00095 3.2E-08 51.8 3.1 23 15-37 31-53 (359)
353 3co5_A Putative two-component 96.7 0.0022 7.5E-08 42.9 4.5 24 13-36 27-50 (143)
354 3nh6_A ATP-binding cassette SU 96.7 0.00069 2.4E-08 51.4 2.2 22 15-36 82-103 (306)
355 1uf9_A TT1252 protein; P-loop, 96.7 0.0013 4.4E-08 46.5 3.5 27 10-36 5-31 (203)
356 2it1_A 362AA long hypothetical 96.7 0.00099 3.4E-08 51.8 3.1 23 15-37 31-53 (362)
357 3rlf_A Maltose/maltodextrin im 96.7 0.001 3.4E-08 52.1 3.1 23 15-37 31-53 (381)
358 1vht_A Dephospho-COA kinase; s 96.7 0.0013 4.6E-08 47.1 3.6 24 12-35 3-26 (218)
359 1via_A Shikimate kinase; struc 96.7 0.001 3.5E-08 46.0 2.9 21 15-35 6-26 (175)
360 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0013 4.3E-08 48.8 3.5 23 13-35 4-26 (260)
361 2xb4_A Adenylate kinase; ATP-b 96.7 0.0011 3.9E-08 47.8 3.2 22 14-35 1-22 (223)
362 3tui_C Methionine import ATP-b 96.7 0.001 3.5E-08 51.7 3.1 23 15-37 56-78 (366)
363 4ido_A Atlastin-1; GTPase, GTP 96.6 0.0046 1.6E-07 49.3 6.8 62 11-72 65-151 (457)
364 3be4_A Adenylate kinase; malar 96.6 0.0011 3.7E-08 47.7 3.0 23 13-35 5-27 (217)
365 1xjc_A MOBB protein homolog; s 96.6 0.0012 4.2E-08 45.5 3.1 23 14-36 5-27 (169)
366 1g29_1 MALK, maltose transport 96.6 0.0011 3.7E-08 51.8 3.1 23 15-37 31-53 (372)
367 1v43_A Sugar-binding transport 96.6 0.0011 3.8E-08 51.7 3.1 23 15-37 39-61 (372)
368 2c95_A Adenylate kinase 1; tra 96.6 0.001 3.5E-08 46.8 2.6 24 12-35 8-31 (196)
369 1rj9_A FTSY, signal recognitio 96.6 0.0011 3.9E-08 50.2 3.0 23 13-35 102-124 (304)
370 3b9q_A Chloroplast SRP recepto 96.6 0.0012 4.1E-08 50.1 3.1 24 12-35 99-122 (302)
371 2p5t_B PEZT; postsegregational 96.6 0.001 3.5E-08 49.0 2.7 26 10-35 29-54 (253)
372 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.0011 3.9E-08 50.9 3.0 23 15-37 173-195 (330)
373 1odf_A YGR205W, hypothetical 3 96.6 0.0017 5.8E-08 49.0 3.8 26 10-35 28-53 (290)
374 1rz3_A Hypothetical protein rb 96.6 0.0016 5.4E-08 46.2 3.5 25 11-35 20-44 (201)
375 1sq5_A Pantothenate kinase; P- 96.6 0.0016 5.5E-08 49.5 3.7 26 11-36 78-103 (308)
376 2ewv_A Twitching motility prot 96.6 0.0013 4.4E-08 51.4 3.2 22 15-36 138-159 (372)
377 2vli_A Antibiotic resistance p 96.6 0.00086 2.9E-08 46.6 2.0 23 13-35 5-27 (183)
378 3d31_A Sulfate/molybdate ABC t 96.6 0.0009 3.1E-08 51.8 2.2 23 15-37 28-50 (348)
379 1in4_A RUVB, holliday junction 96.5 0.0012 4.1E-08 50.8 2.8 24 14-37 52-75 (334)
380 2gza_A Type IV secretion syste 96.5 0.0012 4.2E-08 51.3 2.9 22 15-36 177-198 (361)
381 1p9r_A General secretion pathw 96.5 0.0013 4.6E-08 52.1 3.0 23 15-37 169-191 (418)
382 1iy2_A ATP-dependent metallopr 96.5 0.0015 5.1E-08 48.8 3.1 21 16-36 76-96 (278)
383 2ze6_A Isopentenyl transferase 96.5 0.0015 5.2E-08 48.2 3.1 21 15-35 3-23 (253)
384 2pbr_A DTMP kinase, thymidylat 96.5 0.0017 5.8E-08 45.5 3.1 21 15-35 2-22 (195)
385 2p65_A Hypothetical protein PF 96.5 0.0013 4.6E-08 45.5 2.5 24 13-36 43-66 (187)
386 3gd7_A Fusion complex of cysti 96.5 0.0015 5.2E-08 51.3 3.0 22 15-36 49-70 (390)
387 2oap_1 GSPE-2, type II secreti 96.5 0.0015 5.1E-08 53.2 3.1 23 15-37 262-284 (511)
388 1gtv_A TMK, thymidylate kinase 96.5 0.00068 2.3E-08 48.4 0.9 21 15-35 2-22 (214)
389 1zcb_A G alpha I/13; GTP-bindi 96.5 0.0019 6.4E-08 50.3 3.4 24 11-34 31-54 (362)
390 2bwj_A Adenylate kinase 5; pho 96.4 0.0018 6.1E-08 45.6 3.0 23 13-35 12-34 (199)
391 2z0h_A DTMP kinase, thymidylat 96.4 0.002 6.7E-08 45.3 3.1 22 15-36 2-23 (197)
392 1oxx_K GLCV, glucose, ABC tran 96.4 0.00091 3.1E-08 51.9 1.4 23 15-37 33-55 (353)
393 3kta_A Chromosome segregation 96.4 0.0019 6.6E-08 44.8 3.0 21 15-35 28-48 (182)
394 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0019 6.4E-08 46.6 3.0 22 15-36 25-46 (235)
395 2w58_A DNAI, primosome compone 96.4 0.0021 7.3E-08 45.4 3.3 24 14-37 55-78 (202)
396 1qf9_A UMP/CMP kinase, protein 96.4 0.0026 9E-08 44.4 3.7 22 14-35 7-28 (194)
397 3r20_A Cytidylate kinase; stru 96.4 0.002 6.8E-08 46.9 3.0 24 12-35 8-31 (233)
398 3bos_A Putative DNA replicatio 96.4 0.0022 7.5E-08 46.4 3.3 24 13-36 52-75 (242)
399 2og2_A Putative signal recogni 96.4 0.002 6.8E-08 50.1 3.1 24 12-35 156-179 (359)
400 1e6c_A Shikimate kinase; phosp 96.4 0.0022 7.7E-08 44.0 3.1 21 15-35 4-24 (173)
401 4e22_A Cytidylate kinase; P-lo 96.4 0.0023 7.9E-08 47.1 3.3 21 14-34 28-48 (252)
402 1lv7_A FTSH; alpha/beta domain 96.4 0.0021 7.2E-08 47.3 3.1 23 14-36 46-68 (257)
403 1zuh_A Shikimate kinase; alpha 96.3 0.0024 8.4E-08 43.7 3.2 22 14-35 8-29 (168)
404 2npi_A Protein CLP1; CLP1-PCF1 96.3 0.0018 6E-08 52.1 2.8 23 15-37 140-162 (460)
405 2vp4_A Deoxynucleoside kinase; 96.3 0.0023 7.8E-08 46.4 3.1 26 11-36 18-43 (230)
406 2pez_A Bifunctional 3'-phospho 96.3 0.0029 9.9E-08 43.9 3.5 23 13-35 5-27 (179)
407 1p5z_B DCK, deoxycytidine kina 96.3 0.0017 6E-08 48.0 2.5 28 9-36 20-47 (263)
408 2yhs_A FTSY, cell division pro 96.3 0.0021 7.3E-08 51.8 3.1 23 13-35 293-315 (503)
409 4eaq_A DTMP kinase, thymidylat 96.3 0.0032 1.1E-07 45.7 3.8 25 12-36 25-49 (229)
410 2iyv_A Shikimate kinase, SK; t 96.3 0.0026 9E-08 44.2 3.0 21 15-35 4-24 (184)
411 2obl_A ESCN; ATPase, hydrolase 96.3 0.0026 8.9E-08 49.2 3.2 23 15-37 73-95 (347)
412 1nij_A Hypothetical protein YJ 96.3 0.0025 8.7E-08 48.7 3.1 24 14-37 5-28 (318)
413 3qf7_A RAD50; ABC-ATPase, ATPa 96.2 0.015 5E-07 45.3 7.4 22 13-35 24-45 (365)
414 2f6r_A COA synthase, bifunctio 96.2 0.0031 1.1E-07 47.3 3.4 25 11-35 73-97 (281)
415 1cr0_A DNA primase/helicase; R 96.2 0.0026 8.8E-08 48.0 3.0 23 15-37 37-59 (296)
416 3nwj_A ATSK2; P loop, shikimat 96.2 0.0025 8.7E-08 46.9 2.8 22 14-35 49-70 (250)
417 1m7g_A Adenylylsulfate kinase; 96.2 0.004 1.4E-07 44.5 3.6 24 12-35 24-47 (211)
418 3n70_A Transport activator; si 96.1 0.0033 1.1E-07 42.0 2.9 26 12-37 23-48 (145)
419 1n0w_A DNA repair protein RAD5 96.1 0.0032 1.1E-07 45.7 3.1 22 15-36 26-47 (243)
420 3t15_A Ribulose bisphosphate c 96.1 0.0043 1.5E-07 46.8 3.8 27 11-37 34-60 (293)
421 1tue_A Replication protein E1; 96.1 0.0027 9.4E-08 45.1 2.5 22 15-36 60-81 (212)
422 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0033 1.1E-07 51.6 3.3 23 15-37 49-71 (538)
423 2cvh_A DNA repair and recombin 96.1 0.0035 1.2E-07 44.8 3.0 21 15-35 22-42 (220)
424 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.0039 1.3E-07 42.1 3.1 20 16-35 26-45 (149)
425 3h4m_A Proteasome-activating n 96.1 0.0037 1.3E-07 46.7 3.2 25 12-36 50-74 (285)
426 1svm_A Large T antigen; AAA+ f 96.1 0.0034 1.2E-07 49.1 3.0 22 14-35 170-191 (377)
427 1ltq_A Polynucleotide kinase; 96.1 0.0042 1.5E-07 46.8 3.5 22 14-35 3-24 (301)
428 3ozx_A RNAse L inhibitor; ATP 96.1 0.0033 1.1E-07 51.6 3.0 23 15-37 27-49 (538)
429 3b9p_A CG5977-PA, isoform A; A 96.1 0.0038 1.3E-07 46.9 3.2 24 13-36 54-77 (297)
430 1njg_A DNA polymerase III subu 96.1 0.0037 1.3E-07 45.0 3.0 22 15-36 47-68 (250)
431 3euj_A Chromosome partition pr 96.0 0.0036 1.2E-07 50.5 3.1 21 15-35 31-51 (483)
432 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.0042 1.5E-07 45.7 3.3 24 13-36 39-62 (262)
433 2chg_A Replication factor C sm 96.0 0.0039 1.3E-07 44.3 3.0 22 15-36 40-61 (226)
434 3syl_A Protein CBBX; photosynt 96.0 0.0044 1.5E-07 46.8 3.5 25 12-36 66-90 (309)
435 3uc9_A Increased recombination 96.0 0.0052 1.8E-07 44.4 3.5 27 11-37 27-53 (233)
436 3cf0_A Transitional endoplasmi 96.0 0.004 1.4E-07 47.1 3.0 24 13-36 49-72 (301)
437 2dpy_A FLII, flagellum-specifi 96.0 0.0043 1.5E-07 49.5 3.2 23 15-37 159-181 (438)
438 3j16_B RLI1P; ribosome recycli 96.0 0.004 1.4E-07 51.8 3.1 23 15-37 105-127 (608)
439 1l8q_A Chromosomal replication 95.9 0.0044 1.5E-07 47.3 3.0 24 14-37 38-61 (324)
440 2grj_A Dephospho-COA kinase; T 95.9 0.0061 2.1E-07 43.0 3.5 25 12-36 11-35 (192)
441 1d2n_A N-ethylmaleimide-sensit 95.9 0.0071 2.4E-07 44.9 3.9 26 11-36 62-87 (272)
442 3b60_A Lipid A export ATP-bind 95.9 0.0047 1.6E-07 51.2 3.1 23 15-37 371-393 (582)
443 3bk7_A ABC transporter ATP-bin 95.8 0.005 1.7E-07 51.2 3.2 23 15-37 119-141 (607)
444 1q3t_A Cytidylate kinase; nucl 95.8 0.0061 2.1E-07 44.3 3.2 26 10-35 13-38 (236)
445 1nlf_A Regulatory protein REPA 95.8 0.0053 1.8E-07 45.8 3.0 21 15-35 32-52 (279)
446 2px0_A Flagellar biosynthesis 95.8 0.0061 2.1E-07 46.1 3.2 133 13-157 105-273 (296)
447 1yqt_A RNAse L inhibitor; ATP- 95.8 0.006 2.1E-07 50.1 3.3 23 15-37 314-336 (538)
448 3b5x_A Lipid A export ATP-bind 95.8 0.0054 1.9E-07 50.8 3.1 23 15-37 371-393 (582)
449 3ozx_A RNAse L inhibitor; ATP 95.8 0.0053 1.8E-07 50.3 3.0 23 15-37 296-318 (538)
450 3zvl_A Bifunctional polynucleo 95.7 0.0084 2.9E-07 47.6 4.0 25 12-36 257-281 (416)
451 3bk7_A ABC transporter ATP-bin 95.7 0.0061 2.1E-07 50.7 3.3 23 15-37 384-406 (607)
452 2qgz_A Helicase loader, putati 95.7 0.0066 2.3E-07 46.1 3.3 24 13-36 152-175 (308)
453 2qby_A CDC6 homolog 1, cell di 95.7 0.0057 2E-07 47.5 3.0 24 13-36 45-68 (386)
454 1sxj_C Activator 1 40 kDa subu 95.7 0.0054 1.8E-07 47.2 2.8 23 15-37 48-70 (340)
455 3gmt_A Adenylate kinase; ssgci 95.7 0.007 2.4E-07 43.9 3.2 23 13-35 8-30 (230)
456 1ofh_A ATP-dependent HSL prote 95.7 0.0063 2.1E-07 45.8 3.1 24 13-36 50-73 (310)
457 1fnn_A CDC6P, cell division co 95.7 0.0068 2.3E-07 47.2 3.3 23 15-37 46-68 (389)
458 4b4t_K 26S protease regulatory 95.7 0.0062 2.1E-07 48.4 3.1 23 14-36 207-229 (428)
459 3eie_A Vacuolar protein sortin 95.7 0.0068 2.3E-07 46.3 3.2 24 13-36 51-74 (322)
460 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.0062 2.1E-07 46.5 3.0 24 13-36 45-68 (322)
461 1sxj_E Activator 1 40 kDa subu 95.7 0.0052 1.8E-07 47.4 2.5 22 15-36 38-59 (354)
462 4b4t_M 26S protease regulatory 95.7 0.0066 2.3E-07 48.3 3.1 25 12-36 214-238 (434)
463 2yl4_A ATP-binding cassette SU 95.6 0.0049 1.7E-07 51.2 2.4 23 15-37 372-394 (595)
464 4fcw_A Chaperone protein CLPB; 95.6 0.0094 3.2E-07 45.0 3.8 24 14-37 48-71 (311)
465 2qmh_A HPR kinase/phosphorylas 95.6 0.0073 2.5E-07 42.7 2.9 24 14-37 35-58 (205)
466 1vma_A Cell division protein F 95.6 0.0073 2.5E-07 45.8 3.1 86 61-158 187-284 (306)
467 3qf4_B Uncharacterized ABC tra 95.6 0.0056 1.9E-07 50.9 2.6 23 15-37 383-405 (598)
468 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0092 3.2E-07 46.1 3.5 24 12-35 23-46 (359)
469 4b4t_L 26S protease subunit RP 95.6 0.0074 2.5E-07 48.1 3.1 25 12-36 214-238 (437)
470 4a82_A Cystic fibrosis transme 95.6 0.0048 1.7E-07 51.1 2.1 23 15-37 369-391 (578)
471 3j16_B RLI1P; ribosome recycli 95.5 0.0073 2.5E-07 50.2 3.1 23 16-38 381-403 (608)
472 3ake_A Cytidylate kinase; CMP 95.5 0.0093 3.2E-07 42.1 3.3 21 15-35 4-24 (208)
473 3u61_B DNA polymerase accessor 95.5 0.096 3.3E-06 39.7 9.1 22 16-37 51-72 (324)
474 2dr3_A UPF0273 protein PH0284; 95.5 0.0082 2.8E-07 43.6 3.0 21 15-35 25-45 (247)
475 3crm_A TRNA delta(2)-isopenten 95.5 0.0095 3.2E-07 45.5 3.3 23 14-36 6-28 (323)
476 2ocp_A DGK, deoxyguanosine kin 95.5 0.01 3.5E-07 43.2 3.4 24 13-36 2-25 (241)
477 4b4t_J 26S protease regulatory 95.5 0.0084 2.9E-07 47.2 3.0 24 13-36 182-205 (405)
478 2iw3_A Elongation factor 3A; a 95.4 0.0098 3.4E-07 52.0 3.7 24 15-38 463-486 (986)
479 3uk6_A RUVB-like 2; hexameric 95.4 0.009 3.1E-07 46.3 3.2 23 14-36 71-93 (368)
480 3pxg_A Negative regulator of g 95.4 0.0081 2.8E-07 48.4 3.0 23 14-36 202-224 (468)
481 4dzz_A Plasmid partitioning pr 95.4 0.035 1.2E-06 39.0 6.0 86 61-154 76-162 (206)
482 2r62_A Cell division protease 95.4 0.0038 1.3E-07 46.2 1.0 22 15-36 46-67 (268)
483 1sxj_D Activator 1 41 kDa subu 95.4 0.0087 3E-07 46.0 3.0 22 15-36 60-81 (353)
484 3qf4_A ABC transporter, ATP-bi 95.4 0.0065 2.2E-07 50.4 2.4 22 15-36 371-392 (587)
485 3qks_A DNA double-strand break 95.4 0.01 3.5E-07 42.2 3.1 20 16-35 26-45 (203)
486 3te6_A Regulatory protein SIR3 95.4 0.0072 2.5E-07 46.1 2.4 26 12-37 44-69 (318)
487 2v1u_A Cell division control p 95.4 0.008 2.7E-07 46.7 2.7 25 12-36 43-67 (387)
488 2qp9_X Vacuolar protein sortin 95.4 0.0096 3.3E-07 46.2 3.0 23 14-36 85-107 (355)
489 1pzn_A RAD51, DNA repair and r 95.4 0.0093 3.2E-07 46.1 3.0 23 15-37 133-155 (349)
490 3a8t_A Adenylate isopentenyltr 95.3 0.011 3.6E-07 45.4 3.2 22 15-36 42-63 (339)
491 3exa_A TRNA delta(2)-isopenten 95.3 0.011 3.8E-07 44.9 3.2 22 15-36 5-26 (322)
492 2z4s_A Chromosomal replication 95.3 0.0094 3.2E-07 47.6 3.0 24 13-36 130-153 (440)
493 3d3q_A TRNA delta(2)-isopenten 95.3 0.01 3.5E-07 45.6 3.0 22 14-35 8-29 (340)
494 3d8b_A Fidgetin-like protein 1 95.3 0.011 3.9E-07 45.7 3.3 25 12-36 116-140 (357)
495 2dhr_A FTSH; AAA+ protein, hex 95.3 0.01 3.5E-07 48.2 3.0 22 15-36 66-87 (499)
496 3m6a_A ATP-dependent protease 95.3 0.011 3.7E-07 48.6 3.2 23 14-36 109-131 (543)
497 3cr8_A Sulfate adenylyltranfer 95.3 0.0075 2.6E-07 49.6 2.2 25 12-36 368-392 (552)
498 2bjv_A PSP operon transcriptio 95.3 0.012 4.1E-07 43.4 3.2 24 14-37 30-53 (265)
499 1um8_A ATP-dependent CLP prote 95.2 0.01 3.5E-07 46.3 2.9 24 13-36 72-95 (376)
500 2r44_A Uncharacterized protein 95.2 0.0073 2.5E-07 46.2 2.0 22 15-36 48-69 (331)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.7e-44 Score=263.74 Aligned_cols=179 Identities=36% Similarity=0.603 Sum_probs=142.9
Q ss_pred CCCCccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 028292 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS 79 (211)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (211)
|++......+.+.+||+|+|++|||||||+++|+.+.+ ..+.++.+.++....+.+++..+.+.||||+|++++..+++
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~ 80 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP 80 (216)
T ss_dssp ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence 55555555566789999999999999999999999998 67789999999999999999999999999999999999999
Q ss_pred ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccC
Q 028292 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK 159 (211)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (211)
.++++++++++|||++++++|+.+.. |+..+.... ..++|++||+||+|+.+.+.+..+++.+++..+++.|+++||+
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~-~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAk 158 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTK-WIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAK 158 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTT
T ss_pred HHhccccEEEEEeecchhHHHHHHHH-HHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCC
Confidence 99999999999999999999999998 666665555 5789999999999998888999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCc
Q 028292 160 TRVNVEQCFEELVLKILDTPSL 181 (211)
Q Consensus 160 ~~~~v~~~~~~i~~~~~~~~~~ 181 (211)
+|.||+++|.+|++.+......
T Consensus 159 tg~nV~e~F~~i~~~i~~~~~~ 180 (216)
T 4dkx_A 159 AGYNVKQLFRRVAAALPGMEST 180 (216)
T ss_dssp TTBSHHHHHHHHHHHC------
T ss_pred CCcCHHHHHHHHHHHHHhhhcc
Confidence 9999999999999998765443
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=9.9e-37 Score=221.73 Aligned_cols=170 Identities=56% Similarity=0.895 Sum_probs=153.6
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (211)
..+..++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 356789999999999999999999999988 5677888888888888899999999999999999999999999999999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC 167 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 167 (211)
+|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 84 vilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 161 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKM-WLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDA 161 (206)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999999887 777676655 568999999999999887788888899999999999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028292 168 FEELVLKILDTPS 180 (211)
Q Consensus 168 ~~~i~~~~~~~~~ 180 (211)
|.+|.+.+.+...
T Consensus 162 ~~~l~~~i~~~~~ 174 (206)
T 2bcg_Y 162 FLTMARQIKESMS 174 (206)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 3
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-37 Score=225.37 Aligned_cols=180 Identities=43% Similarity=0.718 Sum_probs=144.9
Q ss_pred CCCCccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccc
Q 028292 1 MASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS 79 (211)
Q Consensus 1 ~~~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 79 (211)
|++.......+..++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.||||||++.+...+.
T Consensus 1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (223)
T 3cpj_B 1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS 80 (223)
T ss_dssp ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence 55566666678899999999999999999999999988 56667888888888888999999999999999999999999
Q ss_pred ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccC
Q 028292 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK 159 (211)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (211)
.+++.+|++|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||+
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~~~~~-~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 158 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYENCNH-WLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSAL 158 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHHHHHH-HHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 99999999999999999999999887 777776654 5689999999999997777788888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcc
Q 028292 160 TRVNVEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 160 ~~~~v~~~~~~i~~~~~~~~~~~ 182 (211)
++.|++++|++|.+.+.+.....
T Consensus 159 ~~~gi~~l~~~l~~~i~~~~~~~ 181 (223)
T 3cpj_B 159 NSENVDKAFEELINTIYQKVSKH 181 (223)
T ss_dssp -CCCHHHHHHHHHHHHTTCC---
T ss_pred CCCCHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999998765543
No 4
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=221.46 Aligned_cols=173 Identities=35% Similarity=0.575 Sum_probs=147.7
Q ss_pred ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 028292 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR 83 (211)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (211)
+.+.+..+.++|+|+|++|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.|||+||++.+...+..++.
T Consensus 6 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 84 (206)
T 2bov_A 6 PKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFR 84 (206)
T ss_dssp -----CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHH
T ss_pred ccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHh
Confidence 3445566789999999999999999999999887 45556655444 456778888899999999999999999999999
Q ss_pred CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN 163 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (211)
.+|++++|||++++.+|+.+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|
T Consensus 85 ~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 163 (206)
T 2bov_A 85 SGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRAN 163 (206)
T ss_dssp HCSEEEEEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTT
T ss_pred hCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCC
Confidence 9999999999999999999877 666666655456899999999999987777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 028292 164 VEQCFEELVLKILDTP 179 (211)
Q Consensus 164 v~~~~~~i~~~~~~~~ 179 (211)
++++|++|.+.+.++.
T Consensus 164 i~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 164 VDKVFFDLMREIRARK 179 (206)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcc
Confidence 9999999999998754
No 5
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2e-35 Score=210.92 Aligned_cols=173 Identities=33% Similarity=0.548 Sum_probs=149.5
Q ss_pred CccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 028292 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYY 82 (211)
Q Consensus 4 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 82 (211)
+.......+.+||+|+|++|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++
T Consensus 9 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 87 (183)
T 3kkq_A 9 SAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYM 87 (183)
T ss_dssp -----CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHH
T ss_pred ccCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHH
Confidence 33345566889999999999999999999999887 55666666655 67778899999999999999999999999999
Q ss_pred cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccC-CC
Q 028292 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK-TR 161 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~ 161 (211)
+++|++++|||++++.+|+.+.. |...+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||+ ++
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 166 (183)
T 3kkq_A 88 RTGDGFLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPP 166 (183)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSC
T ss_pred hcCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCC
Confidence 99999999999999999999887 66666554446789999999999998888899999999999999999999999 99
Q ss_pred CCHHHHHHHHHHHHHcC
Q 028292 162 VNVEQCFEELVLKILDT 178 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~~~ 178 (211)
.|++++|++|.+.+.++
T Consensus 167 ~~v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 167 LNVDKTFHDLVRVIRQQ 183 (183)
T ss_dssp BSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 99999999999988753
No 6
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.3e-35 Score=210.80 Aligned_cols=174 Identities=49% Similarity=0.825 Sum_probs=150.5
Q ss_pred CCCccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 028292 2 ASSTSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSS 80 (211)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (211)
+|+......++.++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..
T Consensus 4 ~s~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 83 (179)
T 1z0f_A 4 GSATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRS 83 (179)
T ss_dssp -------CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHH
T ss_pred CCCCCccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHH
Confidence 4455556677899999999999999999999999987 566778888888888889999999999999999999999999
Q ss_pred cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT 160 (211)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (211)
+++++|++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++..++++++++||++
T Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (179)
T 1z0f_A 84 YYRGAAGALMVYDITRRSTYNHLSS-WLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKT 161 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred HhccCCEEEEEEeCcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 9999999999999999999998877 666666554 46899999999999977777888899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc
Q 028292 161 RVNVEQCFEELVLKILD 177 (211)
Q Consensus 161 ~~~v~~~~~~i~~~~~~ 177 (211)
|.|++++|++|.+.+.+
T Consensus 162 ~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 162 GENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp CTTHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999998864
No 7
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=4.2e-35 Score=208.83 Aligned_cols=171 Identities=29% Similarity=0.439 Sum_probs=147.9
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
..+.++|+|+|++|||||||+++|+++.+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 34689999999999999999999998887 66677777766 67778899999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
++|||++++++|+.+.. |...+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|
T Consensus 82 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 160 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160 (181)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence 99999999999999988 66666555546789999999999998888899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcc
Q 028292 169 EELVLKILDTPSLL 182 (211)
Q Consensus 169 ~~i~~~~~~~~~~~ 182 (211)
.+|.+.+.+.....
T Consensus 161 ~~l~~~~~~~~~~~ 174 (181)
T 3t5g_A 161 RRIILEAEKMDGAC 174 (181)
T ss_dssp HHHHHHHHTC----
T ss_pred HHHHHHHHHhcCCc
Confidence 99999998776443
No 8
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=5.6e-35 Score=210.66 Aligned_cols=172 Identities=57% Similarity=0.917 Sum_probs=155.3
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
+..+..+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 4456889999999999999999999999887 667788888888899999999999999999999999999999999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (211)
++|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|+++
T Consensus 91 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 168 (196)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999887 777776665 56899999999999988888888999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCc
Q 028292 167 CFEELVLKILDTPSL 181 (211)
Q Consensus 167 ~~~~i~~~~~~~~~~ 181 (211)
+|.+|.+.+.+....
T Consensus 169 l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 169 SFMTMAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999876543
No 9
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-35 Score=212.44 Aligned_cols=170 Identities=45% Similarity=0.819 Sum_probs=152.0
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
+...++.+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++
T Consensus 20 ~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (201)
T 2ew1_A 20 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSA 99 (201)
T ss_dssp --CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcC
Confidence 34556889999999999999999999999888 56778888888888889999999999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
|++|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus 100 d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 177 (201)
T 2ew1_A 100 NALILTYDITCEESFRCLPE-WLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVE 177 (201)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999998877 777776655 5689999999999997777788888999999999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028292 166 QCFEELVLKILDT 178 (211)
Q Consensus 166 ~~~~~i~~~~~~~ 178 (211)
++|.+|.+.+.+.
T Consensus 178 ~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 178 KLFLDLACRLISE 190 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
No 10
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1e-34 Score=208.42 Aligned_cols=171 Identities=47% Similarity=0.842 Sum_probs=152.8
Q ss_pred cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 028292 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84 (211)
Q Consensus 6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (211)
.....+..++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..++..
T Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 94 (189)
T 2gf9_A 15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG 94 (189)
T ss_dssp CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTT
T ss_pred CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccC
Confidence 345566889999999999999999999999988 5667888888888888889999999999999999999999999999
Q ss_pred ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164 (211)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (211)
+|++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|+
T Consensus 95 ~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 95 AMGFLLMYDIANQESFAAVQD-WATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINV 172 (189)
T ss_dssp CSEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 999999999999999998877 666666554 568999999999999777778888899999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028292 165 EQCFEELVLKILDT 178 (211)
Q Consensus 165 ~~~~~~i~~~~~~~ 178 (211)
++++++|.+.+.++
T Consensus 173 ~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 173 KQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988753
No 11
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.3e-35 Score=209.83 Aligned_cols=176 Identities=60% Similarity=0.976 Sum_probs=154.9
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
+....+.++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.||||||++.+...+..+++++
T Consensus 9 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (195)
T 1x3s_A 9 DEDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGA 88 (195)
T ss_dssp CTTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTC
T ss_pred ccCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 34556789999999999999999999999987 56778888888888889999999999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
|++|+|||++++.+++.+.. |+..+.......++|+++|+||+|+. .+.+..+++..++...+++++++||+++.|++
T Consensus 89 d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 166 (195)
T 1x3s_A 89 QGVILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQ 166 (195)
T ss_dssp CEEEEEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHH
Confidence 99999999999999998887 66666655545689999999999994 45577888889999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcccC
Q 028292 166 QCFEELVLKILDTPSLLSE 184 (211)
Q Consensus 166 ~~~~~i~~~~~~~~~~~~~ 184 (211)
++|++|.+.+.+.......
T Consensus 167 ~l~~~l~~~~~~~~~~~~~ 185 (195)
T 1x3s_A 167 CAFEELVEKIIQTPGLWES 185 (195)
T ss_dssp HHHHHHHHHHHTSGGGTCC
T ss_pred HHHHHHHHHHHhhhhhhcc
Confidence 9999999999977655544
No 12
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.4e-35 Score=213.73 Aligned_cols=171 Identities=42% Similarity=0.781 Sum_probs=144.8
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
++..+..+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.|||+||++.+...+..+++++
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 45567889999999999999999999999888 56677878788888888899889999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNV 164 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 164 (211)
|++|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++...++ +++++||+++.|+
T Consensus 103 d~iilv~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence 99999999999999998887 666666655 57899999999999987777888899999999999 9999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 028292 165 EQCFEELVLKILDTP 179 (211)
Q Consensus 165 ~~~~~~i~~~~~~~~ 179 (211)
+++|++|.+.+.+..
T Consensus 181 ~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 181 EEAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987543
No 13
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=7.2e-35 Score=209.52 Aligned_cols=171 Identities=49% Similarity=0.811 Sum_probs=149.4
Q ss_pred cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 028292 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84 (211)
Q Consensus 6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (211)
........+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.|||+||++.+...+..++++
T Consensus 14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 93 (191)
T 2a5j_A 14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG 93 (191)
T ss_dssp CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence 355667899999999999999999999999888 4566777888888888899999999999999999999999999999
Q ss_pred ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164 (211)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (211)
+|++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|+
T Consensus 94 ~d~ii~v~d~~~~~s~~~~~~-~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 94 AAGALLVYDITRRETFNHLTS-WLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNV 171 (191)
T ss_dssp CSEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999998887 666666554 568999999999999777778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028292 165 EQCFEELVLKILDT 178 (211)
Q Consensus 165 ~~~~~~i~~~~~~~ 178 (211)
+++|++|.+.+.++
T Consensus 172 ~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 172 EEAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998753
No 14
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-34 Score=204.85 Aligned_cols=171 Identities=43% Similarity=0.810 Sum_probs=143.4
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
+..+..++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 3456889999999999999999999999887 35677888888888888899999999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
|++|+|+|++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++
T Consensus 85 d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (180)
T 2g6b_A 85 HALLLLYDVTNKASFDNIQA-WLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVD 162 (180)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 99999999999999998877 666666655 4789999999999998888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 028292 166 QCFEELVLKILDTPS 180 (211)
Q Consensus 166 ~~~~~i~~~~~~~~~ 180 (211)
+++++|.+.+.++..
T Consensus 163 ~l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 163 LAFTAIAKELKRRSM 177 (180)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999986543
No 15
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=2.9e-35 Score=214.90 Aligned_cols=170 Identities=29% Similarity=0.617 Sum_probs=142.8
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
....++|+|+|++|+|||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 35679999999999999999999999887 55666766544 45567788889999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--------cCHHHHHHHHHHhCC-cEEEeccC
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--------VSKKEGIDFAREYGC-LFLECSAK 159 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~ 159 (211)
|+|||++++++|+.+...|+..+.... .++|+++|+||+|+.+.+. +..+++.+++..+++ +++++||+
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSK 162 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCC
Confidence 999999999999998755888887664 4899999999999866543 377888889999996 99999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcc
Q 028292 160 TRVNVEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 160 ~~~~v~~~~~~i~~~~~~~~~~~ 182 (211)
+|.|++++|++|.+.+.+.....
T Consensus 163 ~g~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 163 TQQNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp TCTTHHHHHHHHHHHHHCC----
T ss_pred CCCCHHHHHHHHHHHHhhhhhhc
Confidence 99999999999999998765544
No 16
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=3.5e-35 Score=209.60 Aligned_cols=167 Identities=51% Similarity=0.916 Sum_probs=123.1
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
.+..++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 46789999999999999999999998877 45667778788888888899999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 162 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRN-WIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162 (183)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999887 776666554 4689999999999998877888899999999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 028292 169 EELVLKILDT 178 (211)
Q Consensus 169 ~~i~~~~~~~ 178 (211)
.+|.+.+.+.
T Consensus 163 ~~l~~~i~~~ 172 (183)
T 2fu5_C 163 FTLARDIKAK 172 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 17
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=6.4e-35 Score=206.61 Aligned_cols=167 Identities=28% Similarity=0.426 Sum_probs=136.4
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--ccccccccccCccEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--FRTLTSSYYRGAQGI 88 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~d~~ 88 (211)
.+.++|+|+|++|||||||+++|.+..+....++.+.++....+.+++..+.+.+||+||+.. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 357999999999999999999999988866667788888888888999999999999999887 556677788999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
++|||++++.+|+.+.. |...+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|
T Consensus 82 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 82 VIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 99999999999999887 66555554334689999999999998878888888888999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 028292 169 EELVLKILDT 178 (211)
Q Consensus 169 ~~i~~~~~~~ 178 (211)
++|.+.+.+.
T Consensus 161 ~~l~~~~~~~ 170 (175)
T 2nzj_A 161 EGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 18
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=204.82 Aligned_cols=170 Identities=51% Similarity=0.868 Sum_probs=150.9
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
...++.+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 83 (181)
T 3tw8_B 4 RDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH 83 (181)
T ss_dssp --CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence 3557889999999999999999999999887 567788888888888999999999999999999999999999999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (211)
++|+|||++++.+++.+.. |+..+.... .++|+++|+||+|+.+.+.+...++..++...+++++++||++|.|+++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 84 GVIVVYDVTSAESFVNVKR-WLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE 160 (181)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 9999999999999999877 666666544 6899999999999988888888999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028292 167 CFEELVLKILDTPS 180 (211)
Q Consensus 167 ~~~~i~~~~~~~~~ 180 (211)
++++|.+.+.+...
T Consensus 161 l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 161 MFNCITELVLRAKK 174 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999876543
No 19
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1e-34 Score=204.60 Aligned_cols=166 Identities=39% Similarity=0.717 Sum_probs=142.0
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
.++.++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 35789999999999999999999999888 56778888888888888888999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
++|+|++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|++++|
T Consensus 83 i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKN-WVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELF 160 (170)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 99999999999998887 666665544 4679999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHHHc
Q 028292 169 EELVLKILD 177 (211)
Q Consensus 169 ~~i~~~~~~ 177 (211)
++|.+.+.+
T Consensus 161 ~~l~~~~~~ 169 (170)
T 1z08_A 161 LDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998865
No 20
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.1e-34 Score=205.09 Aligned_cols=169 Identities=38% Similarity=0.646 Sum_probs=148.5
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
......++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 3456789999999999999999999999888 555678888888888889999999999999999999999999999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (211)
++|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++...+++++++||++|.|+++
T Consensus 87 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKK-WVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKE 164 (181)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 9999999999999998887 666666554 46899999999999988788888899999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 028292 167 CFEELVLKILDT 178 (211)
Q Consensus 167 ~~~~i~~~~~~~ 178 (211)
++++|.+.+.+.
T Consensus 165 l~~~l~~~~~~~ 176 (181)
T 2efe_B 165 IFYEIARRLPRV 176 (181)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHHhc
Confidence 999999877654
No 21
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=6.3e-35 Score=205.01 Aligned_cols=164 Identities=29% Similarity=0.405 Sum_probs=122.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVY 92 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~ 92 (211)
.+||+++|++|||||||++++.+.......++.+.++ ...+.+++..+.+.+||+||++.+...+..++..+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 5899999999999999999999877766666777665 456788999999999999999999999999999999999999
Q ss_pred ECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 93 DVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 93 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
|++++++|+.+.. |...+.......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 81 SVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp ETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 9999999999888 555555443357899999999999988888999999999999999999999999999999999999
Q ss_pred HHHHcC
Q 028292 173 LKILDT 178 (211)
Q Consensus 173 ~~~~~~ 178 (211)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988754
No 22
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.8e-35 Score=211.65 Aligned_cols=173 Identities=28% Similarity=0.447 Sum_probs=141.5
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
..+..+.+||+|+|.+|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.||||||++.+...+..+++.+
T Consensus 18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 34456789999999999999999999999988 55556666555 56666777788999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
|++|+|||++++.+|+.+.. |+..+.......++|+++|+||+|+.+.+.+...++..++..++++++++||++|.|++
T Consensus 97 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQ 175 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHH-HHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence 99999999999999999887 66666655445689999999999998888888999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCc
Q 028292 166 QCFEELVLKILDTPSL 181 (211)
Q Consensus 166 ~~~~~i~~~~~~~~~~ 181 (211)
++|.+|.+.+.+....
T Consensus 176 ~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 176 GIFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhhhh
Confidence 9999999999876543
No 23
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=5e-34 Score=205.56 Aligned_cols=170 Identities=29% Similarity=0.579 Sum_probs=148.0
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
....+.+||+|+|++|||||||+++|++..+ ..+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++++|
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 3456789999999999999999999999988 556677766655 36778899999999999999999999999999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC--cccCHHHHHHHHHHhCCc-EEEeccCCCCC
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE--RVVSKKEGIDFAREYGCL-FLECSAKTRVN 163 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 163 (211)
++|+|||++++.+|+.+...|...+.... .++|+++|+||+|+.+. +.+..+++.+++..+++. ++++||++|.|
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG 174 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence 99999999999999998665888887654 67999999999999653 678889999999999998 99999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q 028292 164 VEQCFEELVLKILDTPS 180 (211)
Q Consensus 164 v~~~~~~i~~~~~~~~~ 180 (211)
++++|++|.+.+.++..
T Consensus 175 i~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 175 LNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp HHHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999987654
No 24
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=3.7e-35 Score=213.39 Aligned_cols=169 Identities=36% Similarity=0.656 Sum_probs=145.0
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
....++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.||||||++.+...+..+++++|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45779999999999999999999999887 66777888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HhCCcEEEeccCCCCCH
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKESERVVSKKEGIDFAR-EYGCLFLECSAKTRVNV 164 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v 164 (211)
|+|||++++.+++.+.. |+..+..... ..++|+++|+||+|+. .+.+..+++..++. ..+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 99999999999998877 5555544331 2578999999999997 45567778888877 66789999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 028292 165 EQCFEELVLKILDTPS 180 (211)
Q Consensus 165 ~~~~~~i~~~~~~~~~ 180 (211)
+++|++|.+.+.+...
T Consensus 163 ~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 163 EQAFQTIARNALKQET 178 (207)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999986543
No 25
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=4.2e-34 Score=207.32 Aligned_cols=168 Identities=48% Similarity=0.865 Sum_probs=151.5
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (211)
..+..+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 346789999999999999999999999988 5667888888888888889999999999999999999999999999999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC 167 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 167 (211)
+|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++..++++++++||++|.|++++
T Consensus 84 ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQD-WSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQT 161 (203)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence 999999999999998887 666666554 568999999999999887788888999999999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 028292 168 FEELVLKILDT 178 (211)
Q Consensus 168 ~~~i~~~~~~~ 178 (211)
|++|.+.+.++
T Consensus 162 ~~~l~~~i~~~ 172 (203)
T 1zbd_A 162 FERLVDVICEK 172 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 26
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.7e-34 Score=205.41 Aligned_cols=168 Identities=46% Similarity=0.811 Sum_probs=151.0
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (211)
..++.++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 456889999999999999999999999888 5667788888888888899999999999999999999999999999999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC 167 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 167 (211)
+|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+...++..++...+++++++||++|.|++++
T Consensus 86 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (186)
T 2bme_A 86 ALLVYDITSRETYNALTN-WLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEA 163 (186)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 999999999999998887 666666554 468999999999999777778888899999999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 028292 168 FEELVLKILDT 178 (211)
Q Consensus 168 ~~~i~~~~~~~ 178 (211)
|++|.+.+.+.
T Consensus 164 ~~~l~~~~~~~ 174 (186)
T 2bme_A 164 FVQCARKILNK 174 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 27
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.8e-34 Score=203.18 Aligned_cols=164 Identities=41% Similarity=0.689 Sum_probs=146.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
.+.++|+|+|++|+|||||+++|+++.+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++.++|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 4679999999999999999999999887 556688888888888889999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++++
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (170)
T 1r2q_A 84 VVYDITNEESFARAKN-WVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM 161 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999998887 666665554 46899999999999977777888889999999999999999999999999999
Q ss_pred HHHHHHH
Q 028292 170 ELVLKIL 176 (211)
Q Consensus 170 ~i~~~~~ 176 (211)
+|.+.+.
T Consensus 162 ~i~~~~~ 168 (170)
T 1r2q_A 162 AIAKKLP 168 (170)
T ss_dssp HHHHTSC
T ss_pred HHHHHHh
Confidence 9988764
No 28
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.3e-34 Score=211.84 Aligned_cols=175 Identities=26% Similarity=0.486 Sum_probs=143.3
Q ss_pred ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 028292 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR 83 (211)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (211)
.+.......+||+|+|++|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.||||+|++.+..++..+++
T Consensus 19 ~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 97 (214)
T 3q3j_B 19 RAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYS 97 (214)
T ss_dssp --------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred cCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcC
Confidence 3445566789999999999999999999999988 55667777665 456677888899999999999999999999999
Q ss_pred CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC
Q 028292 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC 151 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~ 151 (211)
++|++|+|||++++++|+.+...|+..+.... .++|+++|+||+|+.+. +.+..+++..++..+++
T Consensus 98 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 175 (214)
T 3q3j_B 98 DSDAVLLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 175 (214)
T ss_dssp TCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred CCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence 99999999999999999995444888887764 68999999999999653 67889999999999999
Q ss_pred -cEEEeccCCCCC-HHHHHHHHHHHHHcCCCcc
Q 028292 152 -LFLECSAKTRVN-VEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 152 -~~~~~Sa~~~~~-v~~~~~~i~~~~~~~~~~~ 182 (211)
+++++||++|.| ++++|.+|.+.+.+.....
T Consensus 176 ~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~~ 208 (214)
T 3q3j_B 176 EIYLEGSAFTSEKSIHSIFRTASMLCLNKPSPL 208 (214)
T ss_dssp SEEEECCTTTCHHHHHHHHHHHHHHHHC-----
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHhccCcCC
Confidence 999999999998 9999999999998765543
No 29
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-34 Score=208.88 Aligned_cols=169 Identities=38% Similarity=0.673 Sum_probs=149.6
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
+..++.+||+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 3456889999999999999999999999987 578889998888888888888999999999999999999999999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (211)
++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++...+++++++||+++.|+++
T Consensus 98 ~iilV~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 98 AAVIVYDITKQDSFYTLKK-WVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEE 175 (192)
T ss_dssp EEEEEEETTCTHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHH
T ss_pred EEEEEEeCCCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence 9999999999999999877 777776655 56899999999999977677888899999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 028292 167 CFEELVLKILDT 178 (211)
Q Consensus 167 ~~~~i~~~~~~~ 178 (211)
++++|.+.+.+.
T Consensus 176 l~~~l~~~i~~~ 187 (192)
T 2fg5_A 176 LFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHTCC--
T ss_pred HHHHHHHHHHhh
Confidence 999999877544
No 30
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.4e-34 Score=207.62 Aligned_cols=170 Identities=36% Similarity=0.626 Sum_probs=145.3
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc-ccccccccC
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR-TLTSSYYRG 84 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~ 84 (211)
.....+.+||+|+|.+|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.||||||++.+. .++..++++
T Consensus 14 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (189)
T 1z06_A 14 RGSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRN 93 (189)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred CCCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence 44556789999999999999999999999888 5677888888888888999999999999999999888 888889999
Q ss_pred ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC---
Q 028292 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR--- 161 (211)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--- 161 (211)
+|++|+|||++++.+|+.+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++...+++++++||+++
T Consensus 94 ~d~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~ 172 (189)
T 1z06_A 94 VHAVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDN 172 (189)
T ss_dssp CCEEEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGG
T ss_pred CCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcc
Confidence 999999999999999999888 6666666654678999999999999777778888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 028292 162 VNVEQCFEELVLKILD 177 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~~ 177 (211)
.|++++|.+|.+.+.+
T Consensus 173 ~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 173 DHVEAIFMTLAHKLKS 188 (189)
T ss_dssp SCHHHHHHHHC-----
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999887753
No 31
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=4.2e-34 Score=201.37 Aligned_cols=164 Identities=38% Similarity=0.691 Sum_probs=148.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
.+.++|+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+|||||.+.+...+..+++++|++|
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 4679999999999999999999999987 667888888888888999999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
+|||++++.+++.+.. |+..+.... ...+|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++++
T Consensus 84 ~v~d~~~~~s~~~~~~-~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 84 IVYDITKEETFSTLKN-WVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI 161 (170)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhC-CCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 9999999999998877 777776654 57899999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHH
Q 028292 170 ELVLKIL 176 (211)
Q Consensus 170 ~i~~~~~ 176 (211)
+|.+.+.
T Consensus 162 ~i~~~i~ 168 (170)
T 1z0j_A 162 EISRRIP 168 (170)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 9998764
No 32
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=206.44 Aligned_cols=169 Identities=43% Similarity=0.753 Sum_probs=150.5
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
+..++.++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+.+..+.+.||||||.+.+...+..++.++|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 4456789999999999999999999999888 456678888888888888999999999999999999999999999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (211)
++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+..+++..++...+++++++||++|.|+++
T Consensus 100 ~vi~v~D~~~~~s~~~~~~-~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVER-WLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL 177 (193)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999988877 666665544 46899999999999977777888889999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 028292 167 CFEELVLKILDT 178 (211)
Q Consensus 167 ~~~~i~~~~~~~ 178 (211)
+|++|.+.+.++
T Consensus 178 l~~~l~~~i~~~ 189 (193)
T 2oil_A 178 AFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 33
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.6e-36 Score=214.65 Aligned_cols=171 Identities=49% Similarity=0.851 Sum_probs=154.2
Q ss_pred cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 028292 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84 (211)
Q Consensus 6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (211)
.+...+..+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+.+..+.+.|||+||++.+...+..++++
T Consensus 16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (191)
T 3dz8_A 16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG 95 (191)
T ss_dssp ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence 345567889999999999999999999999887 5666777888888888888888999999999999999999999999
Q ss_pred ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164 (211)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (211)
+|++|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 173 (191)
T 3dz8_A 96 AMGFILMYDITNEESFNAVQD-WATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISV 173 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred CCEEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 999999999999999998887 777776655 578999999999999888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028292 165 EQCFEELVLKILDT 178 (211)
Q Consensus 165 ~~~~~~i~~~~~~~ 178 (211)
+++|++|.+.+.++
T Consensus 174 ~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 174 RQAFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 34
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=4.1e-34 Score=205.66 Aligned_cols=173 Identities=35% Similarity=0.699 Sum_probs=149.7
Q ss_pred ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeE-EEEEEECCe---------EEEEEEEeCCCccc
Q 028292 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFK-IKHVALGGK---------KMKLAIWDTAGQER 73 (211)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~ 73 (211)
+++.+.+..++|+|+|++|||||||+++|++..+ ..+.++.+.++. ...+.+.+. .+.+.+||+||++.
T Consensus 3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 82 (195)
T 3bc1_A 3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER 82 (195)
T ss_dssp ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence 4455677899999999999999999999999887 566777777776 556666665 78999999999999
Q ss_pred ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcE
Q 028292 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLF 153 (211)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 153 (211)
+...+..+++++|++|+|||++++.+++.+.. |+..+.......++|+++|+||+|+.+.+.+..+++.+++...++++
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 161 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPY 161 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCE
Confidence 99999999999999999999999999998877 67666666544789999999999997777788888999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHcC
Q 028292 154 LECSAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 154 ~~~Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
+++||+++.|+++++++|.+.+.++
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998754
No 35
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-34 Score=202.59 Aligned_cols=163 Identities=45% Similarity=0.729 Sum_probs=145.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
+.++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999887 5677888888888888899999999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC---cccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE---RVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC 167 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 167 (211)
|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+. +.+..+++..++...+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 82 VYDVTKPQSFIKARH-WVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159 (170)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred EEecCChHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999887 666665554 568999999999999654 667888888999999999999999999999999
Q ss_pred HHHHHHHHH
Q 028292 168 FEELVLKIL 176 (211)
Q Consensus 168 ~~~i~~~~~ 176 (211)
|++|.+.+.
T Consensus 160 ~~~l~~~i~ 168 (170)
T 1ek0_A 160 FLGIGEKIP 168 (170)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHHHh
Confidence 999987654
No 36
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=208.27 Aligned_cols=172 Identities=28% Similarity=0.365 Sum_probs=142.9
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc-cccccccC
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-LTSSYYRG 84 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~ 84 (211)
+.+....++|+|+|++|||||||+++|++... ....++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.
T Consensus 17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 96 (195)
T 3cbq_A 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT 96 (195)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence 34456789999999999999999999986544 23345556666677788899999999999999987764 67778899
Q ss_pred ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164 (211)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (211)
+|++|+|||++++.+|+.+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||+++.|+
T Consensus 97 ~d~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 97 GDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 175 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence 999999999999999999888 6666655543468999999999999887888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 028292 165 EQCFEELVLKILDTP 179 (211)
Q Consensus 165 ~~~~~~i~~~~~~~~ 179 (211)
+++|.+|++.+.+..
T Consensus 176 ~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 176 RELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987644
No 37
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=2.4e-34 Score=204.60 Aligned_cols=171 Identities=33% Similarity=0.539 Sum_probs=147.4
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
.+....++|+|+|++|||||||+++|++..+ ..+.++.+..+. ..+.+++..+.+.+||+||++.+...+..++..+|
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 82 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH 82 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCC
Confidence 3456789999999999999999999999887 556666666555 66778888899999999999999999999999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (211)
++++|||++++.+++.+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus 83 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 83 GFLLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE 161 (181)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred EEEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 9999999999999999887 454443333367899999999999987777888889999999999999999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028292 167 CFEELVLKILDTPS 180 (211)
Q Consensus 167 ~~~~i~~~~~~~~~ 180 (211)
++++|.+.+.+...
T Consensus 162 l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 162 AFEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999976543
No 38
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-34 Score=209.44 Aligned_cols=170 Identities=30% Similarity=0.465 Sum_probs=141.7
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
....++|+|+|++|||||||+++|++..+ ..+.++.+.++. ..+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 45679999999999999999999999887 455566654443 4566788889999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC 167 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 167 (211)
|+|||++++.+++.+.. |+..+.... ...++|+++|+||+|+.+ +.+..+++..++..++++++++||++|.|++++
T Consensus 84 i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKEL 161 (199)
T ss_dssp EEEEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Confidence 99999999999988877 445444432 135789999999999965 556778888899999999999999999999999
Q ss_pred HHHHHHHHHcCCCcc
Q 028292 168 FEELVLKILDTPSLL 182 (211)
Q Consensus 168 ~~~i~~~~~~~~~~~ 182 (211)
+++|.+.+.++....
T Consensus 162 ~~~l~~~~~~~~~~~ 176 (199)
T 2gf0_A 162 FQELLTLETRRNMSL 176 (199)
T ss_dssp HHHHHHHCSSSCEEC
T ss_pred HHHHHHHHhhhhccc
Confidence 999999887655433
No 39
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=5.1e-34 Score=204.34 Aligned_cols=169 Identities=35% Similarity=0.592 Sum_probs=142.9
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
.+.++|+|+|++|||||||+++|++..+ ..+.++. .+.....+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4679999999999999999999999887 3444444 4555667778999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
+|||++++.+|+.+.. |...+.......++|+++|+||+|+. ...+..+++..++..++++++++||++|.|++++|+
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999888 66666665546789999999999986 455678888899999999999999999999999999
Q ss_pred HHHHHHHcCCCcc
Q 028292 170 ELVLKILDTPSLL 182 (211)
Q Consensus 170 ~i~~~~~~~~~~~ 182 (211)
+|.+.+.+.....
T Consensus 159 ~l~~~~~~~~~~~ 171 (189)
T 4dsu_A 159 TLVREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhc
Confidence 9999998665433
No 40
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=2.2e-34 Score=202.77 Aligned_cols=165 Identities=27% Similarity=0.361 Sum_probs=132.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc-cccccccCccEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT-LTSSYYRGAQGIIM 90 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~il 90 (211)
.+||+++|++|||||||+++|.+... ....++.+.+.....+.+++..+.+.+||+||+..+.. .+..+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 68999999999999999999997766 34445556677778888999999999999999988876 67777889999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 170 (211)
|||++++++|+.+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence 999999999999988 5555555543568999999999999878888999999999999999999999999999999999
Q ss_pred HHHHHHcC
Q 028292 171 LVLKILDT 178 (211)
Q Consensus 171 i~~~~~~~ 178 (211)
|.+.+..+
T Consensus 161 l~~~i~~~ 168 (169)
T 3q85_A 161 AVRQIRLR 168 (169)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99998765
No 41
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1e-33 Score=203.93 Aligned_cols=171 Identities=30% Similarity=0.596 Sum_probs=147.0
Q ss_pred CccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccc
Q 028292 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYY 82 (211)
Q Consensus 4 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 82 (211)
+++..+....++|+|+|++|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++
T Consensus 9 ~m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 87 (194)
T 2atx_A 9 SMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 87 (194)
T ss_dssp CCSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGC
T ss_pred ccCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhc
Confidence 34455566889999999999999999999999887 55566666554 45567788889999999999999999999999
Q ss_pred cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhC
Q 028292 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYG 150 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~ 150 (211)
+++|++|+|||++++++|+.+...|+..+.... .++|+++|+||+|+.+. +.+..+++.+++..++
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 165 (194)
T 2atx_A 88 PMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG 165 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC
Confidence 999999999999999999998755777777654 58999999999999654 4677888999999999
Q ss_pred C-cEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 151 C-LFLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 151 ~-~~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
+ +++++||++|.|++++|++|.+.+..
T Consensus 166 ~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 166 ACCYVECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 8 99999999999999999999998864
No 42
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=4.1e-34 Score=201.44 Aligned_cols=164 Identities=53% Similarity=0.851 Sum_probs=141.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
..++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 569999999999999999999999888 5667777878888888888888999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 170 (211)
|||++++.+++.+.. |+..+.... ..++|+++|+||+|+ ..+.+..+++.+++...+++++++||++|.|+++++.+
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 158 (170)
T 1g16_A 82 VYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 158 (170)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 999999999988877 666666554 468999999999999 45567788888999999999999999999999999999
Q ss_pred HHHHHHcC
Q 028292 171 LVLKILDT 178 (211)
Q Consensus 171 i~~~~~~~ 178 (211)
|.+.+.++
T Consensus 159 l~~~~~~~ 166 (170)
T 1g16_A 159 LAKLIQEK 166 (170)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99999765
No 43
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=208.38 Aligned_cols=170 Identities=50% Similarity=0.876 Sum_probs=144.9
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
..+....++|+|+|.+|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 34556889999999999999999999999887 56678888888888888999999999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-CCcEEEeccCCCCCH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-GCLFLECSAKTRVNV 164 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v 164 (211)
|++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++.+++... +++++++||++|.|+
T Consensus 100 d~iilV~D~~~~~s~~~~~~-~~~~i~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPK-WMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV 177 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence 99999999999999998877 777776655 568999999999999777778888888888874 789999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028292 165 EQCFEELVLKILDT 178 (211)
Q Consensus 165 ~~~~~~i~~~~~~~ 178 (211)
+++|++|.+.+.++
T Consensus 178 ~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 178 DEIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
No 44
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=3.6e-34 Score=201.35 Aligned_cols=164 Identities=31% Similarity=0.605 Sum_probs=147.3
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
++.+||+|+|++|||||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999999888 566788888888888888999999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
+|||++++.+++.+.. |+..+.... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++++
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 159 (168)
T 1z2a_A 83 LVFSTTDRESFEAISS-WREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159 (168)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 9999999999998887 666665544 6799999999999977777888889999999999999999999999999999
Q ss_pred HHHHHHHc
Q 028292 170 ELVLKILD 177 (211)
Q Consensus 170 ~i~~~~~~ 177 (211)
+|.+.+.+
T Consensus 160 ~l~~~~~~ 167 (168)
T 1z2a_A 160 YLAEKHLQ 167 (168)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99998875
No 45
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=208.39 Aligned_cols=169 Identities=46% Similarity=0.761 Sum_probs=141.6
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
...++.+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.||||||++.+...+..+++++|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 3456789999999999999999999999887 566777787888888888999999999999999999999999999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (211)
++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+...+.+...++..++...+++++++||++|.|+++
T Consensus 100 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAA-WLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 177 (200)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999998887 666665554 47899999999999977777888889999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 028292 167 CFEELVLKILDT 178 (211)
Q Consensus 167 ~~~~i~~~~~~~ 178 (211)
+|.+|.+.+.++
T Consensus 178 l~~~l~~~i~~~ 189 (200)
T 2o52_A 178 AFLKCARTILNK 189 (200)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 46
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=208.72 Aligned_cols=169 Identities=37% Similarity=0.677 Sum_probs=137.5
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
+....+.++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.||||||++.+...+..+++++
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 34456789999999999999999999999987 56778888888888899999999999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC------CCcccCHHHHHHHHHHhCCcEEEeccC
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE------SERVVSKKEGIDFAREYGCLFLECSAK 159 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (211)
|++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+. ..+.+..+++..++...+++++++||+
T Consensus 102 d~iilv~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~ 179 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIRE-WVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAK 179 (199)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTT
T ss_pred CEEEEEEECCChHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCC
Confidence 99999999999999998887 777776554 4689999999999985 456778888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHc
Q 028292 160 TRVNVEQCFEELVLKILD 177 (211)
Q Consensus 160 ~~~~v~~~~~~i~~~~~~ 177 (211)
+|.|++++|.+|.+.+.+
T Consensus 180 ~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 180 DGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TCTTHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998864
No 47
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=7.8e-34 Score=203.04 Aligned_cols=165 Identities=19% Similarity=0.361 Sum_probs=140.3
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
.....+.+||+|+|++|||||||+++++++.+ ..+.++ +.. ....+.+++..+.+.+|||+|++.+. +++++
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGR-FKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEE-EEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cce-EEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence 45566889999999999999999999999988 445555 333 34778889999999999999988776 67789
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCC--CCCcccCHHHHHHHHHHhC-CcEEEeccCCCC
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDK--ESERVVSKKEGIDFAREYG-CLFLECSAKTRV 162 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~--~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 162 (211)
|++++|||++++.+|+.+.. |+..+.......++|+++|+||+|+ ...+.+..+++.+++..++ ++++++||++|.
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 165 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL 165 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence 99999999999999999888 7777766553468999999999999 4567788899999999997 899999999999
Q ss_pred CHHHHHHHHHHHHHcCC
Q 028292 163 NVEQCFEELVLKILDTP 179 (211)
Q Consensus 163 ~v~~~~~~i~~~~~~~~ 179 (211)
|++++|++|.+.+.+.+
T Consensus 166 gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 166 NVERVFQDVAQKVVALR 182 (184)
T ss_dssp THHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999987654
No 48
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.6e-34 Score=207.95 Aligned_cols=169 Identities=26% Similarity=0.365 Sum_probs=138.9
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCc
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-FRTLTSSYYRGA 85 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~ 85 (211)
.....+||+|+|.+|||||||+++|++... ....++.+.++....+.+++..+.+.+|||+|... +..+...+++.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a 112 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG 112 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence 445779999999999999999999996543 34445577777777888899999999999999876 455667788899
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
|++|+|||++++.+|+.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++++++||++|.||+
T Consensus 113 ~~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 113 DAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999887 55555443324689999999999997767788888888888999999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028292 166 QCFEELVLKILDT 178 (211)
Q Consensus 166 ~~~~~i~~~~~~~ 178 (211)
++|++|.+.+...
T Consensus 192 elf~~l~~~i~~~ 204 (211)
T 2g3y_A 192 ELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988643
No 49
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=4.4e-34 Score=202.89 Aligned_cols=166 Identities=38% Similarity=0.651 Sum_probs=146.7
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
..+.++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..++.++|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 34679999999999999999999999887 56677888888888888999999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|+++++
T Consensus 91 i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 168 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSK-WIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168 (179)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999998887 665555544 4689999999999998777788888899999999999999999999999999
Q ss_pred HHHHHHHHc
Q 028292 169 EELVLKILD 177 (211)
Q Consensus 169 ~~i~~~~~~ 177 (211)
++|.+.+.+
T Consensus 169 ~~l~~~~~~ 177 (179)
T 2y8e_A 169 RRVAAALPG 177 (179)
T ss_dssp HHHHHTCC-
T ss_pred HHHHHHHhh
Confidence 999987643
No 50
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=2.9e-33 Score=198.45 Aligned_cols=167 Identities=40% Similarity=0.705 Sum_probs=143.5
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
....++|+|+|++|+|||||++++++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45779999999999999999999999887 56778888888888888999999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-HhCCcEEEeccCCCCCH
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKESERVVSKKEGIDFAR-EYGCLFLECSAKTRVNV 164 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v 164 (211)
++|||++++.+++.+.. |+..+..... ..++|+++|+||+|+. .+.+..+++.+++. ..+++++++||++|.|+
T Consensus 84 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 99999999999998877 6666654432 2678999999999996 55677888888888 56689999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028292 165 EQCFEELVLKILDT 178 (211)
Q Consensus 165 ~~~~~~i~~~~~~~ 178 (211)
+++|++|.+.+.+.
T Consensus 162 ~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 162 AAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998864
No 51
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=4.4e-34 Score=204.80 Aligned_cols=167 Identities=28% Similarity=0.467 Sum_probs=139.4
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
......+||+|+|++|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.||||||++.+..+ ..++..+|
T Consensus 16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 3445789999999999999999999999987 56677777655 455778899999999999999888774 56889999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEecc-CCCCC
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSA-KTRVN 163 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~ 163 (211)
++|+|||++++++|+.+.. |+..+..... ..++|+++|+||+|+...+.+..+++.+++..++++++++|| ++|.|
T Consensus 94 ~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEH 172 (187)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCcccc
Confidence 9999999999999999887 6666655431 268999999999999877788889999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHc
Q 028292 164 VEQCFEELVLKILD 177 (211)
Q Consensus 164 v~~~~~~i~~~~~~ 177 (211)
++++|++|.+.+.+
T Consensus 173 v~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 173 VQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998864
No 52
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=9.6e-34 Score=198.99 Aligned_cols=164 Identities=37% Similarity=0.615 Sum_probs=140.5
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
..+||+++|++|+|||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++.++|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 469999999999999999999999887 44555555443 4456788888999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 170 (211)
|||++++++++.+.. |...+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 999999999999887 6666666554568999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHc
Q 028292 171 LVLKILD 177 (211)
Q Consensus 171 i~~~~~~ 177 (211)
|.+.+.+
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998864
No 53
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-33 Score=205.64 Aligned_cols=170 Identities=52% Similarity=0.842 Sum_probs=146.2
Q ss_pred cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 028292 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84 (211)
Q Consensus 6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (211)
........++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.||||||++.+...+..++..
T Consensus 13 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (213)
T 3cph_A 13 NGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRG 92 (213)
T ss_dssp -------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTT
T ss_pred CCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcc
Confidence 345566789999999999999999999999887 6677888888888888899989999999999999999999999999
Q ss_pred ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164 (211)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (211)
+|++|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+ ..+.+..+++..++..++++++++||+++.|+
T Consensus 93 ~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 93 AMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNV 169 (213)
T ss_dssp CSEEEEEEETTCHHHHHTHHH-HHHHHHHHT-TTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSS
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999988877 666666554 457999999999999 55567778888899999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028292 165 EQCFEELVLKILDT 178 (211)
Q Consensus 165 ~~~~~~i~~~~~~~ 178 (211)
+++|.+|.+.+.+.
T Consensus 170 ~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 170 NEIFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 54
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.2e-33 Score=198.50 Aligned_cols=163 Identities=40% Similarity=0.673 Sum_probs=141.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
+.++|+++|++|||||||+++|+++.+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++.++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999887 45566666544 3556778888999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-CCcEEEeccCCCCCHHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-GCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~~~~~ 169 (211)
|||++++.+++.+.. |...+.......++|+++|+||+|+.+.+.+..+++..++..+ +++++++||++|.|++++++
T Consensus 81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 999999999998887 5555555443578999999999999877778888888998887 78999999999999999999
Q ss_pred HHHHHHH
Q 028292 170 ELVLKIL 176 (211)
Q Consensus 170 ~i~~~~~ 176 (211)
+|.+.+.
T Consensus 160 ~l~~~i~ 166 (167)
T 1c1y_A 160 DLVRQIN 166 (167)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998874
No 55
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=4.4e-34 Score=202.88 Aligned_cols=170 Identities=34% Similarity=0.566 Sum_probs=145.6
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECC-eEEEEEEEeCCCcccccccccccccCccE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG-KKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (211)
..+.++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+.+ ..+.+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 34679999999999999999999999887 45567777778888888876 67899999999999999999999999999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhhcC-CCCCc-EEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCI-KLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
+|+|||++++.+|+.+.. |+..+..... ..+.| +++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus 83 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 161 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF 161 (178)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence 999999999999988876 6666654321 12445 89999999997777788888999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 028292 166 QCFEELVLKILDTPS 180 (211)
Q Consensus 166 ~~~~~i~~~~~~~~~ 180 (211)
++|++|.+.+.+...
T Consensus 162 ~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 162 LCFQKVAAEILGIKL 176 (178)
T ss_dssp HHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhhhh
Confidence 999999999876643
No 56
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=7.6e-34 Score=208.18 Aligned_cols=180 Identities=31% Similarity=0.474 Sum_probs=148.6
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
......+||+|+|.+|||||||+++|++..+ ..+.++.+.+.....+... +..+.+.+|||||++.+...+..++.++
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 4456789999999999999999999998887 5556777776666666554 3448899999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
|++|+|||++++.+++.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLAR-WVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTT
T ss_pred CEEEEEEeCCCHHHHHHHHH-HHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence 99999999999999998887 777776655 4669999999999998877888888888988999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcccCCCCCc
Q 028292 166 QCFEELVLKILDTPSLLSEGSSGV 189 (211)
Q Consensus 166 ~~~~~i~~~~~~~~~~~~~~~~~~ 189 (211)
++|.+|.+.+.+............
T Consensus 164 ~l~~~l~~~~~~~~~~~~~~~~~~ 187 (218)
T 4djt_A 164 LPFLHLARIFTGRPDLIFVSNVNL 187 (218)
T ss_dssp HHHHHHHHHHHCCTTCCBCSCCCC
T ss_pred HHHHHHHHHHhcccccccccccCc
Confidence 999999999998877765544443
No 57
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=2e-34 Score=211.19 Aligned_cols=172 Identities=38% Similarity=0.724 Sum_probs=147.2
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCe----------EEEEEEEeCCCccccc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK----------KMKLAIWDTAGQERFR 75 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~ 75 (211)
....++.+||+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++. .+.+.||||||++.+.
T Consensus 19 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~ 98 (217)
T 2f7s_A 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR 98 (217)
T ss_dssp --CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH
T ss_pred CCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH
Confidence 34557889999999999999999999999887 455667777777777777666 7899999999999999
Q ss_pred ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028292 76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLE 155 (211)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (211)
..+..++.++|++|+|||++++.+++.+.. |+..+.......++|+++|+||+|+...+.+..+++.+++...++++++
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~ 177 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFE 177 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEE
T ss_pred hHHHHHhcCCCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEE
Confidence 999999999999999999999999998876 6665554443378999999999999777778888999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHcCC
Q 028292 156 CSAKTRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 156 ~Sa~~~~~v~~~~~~i~~~~~~~~ 179 (211)
+||+++.|++++|++|.+.+.++.
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999987643
No 58
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.2e-33 Score=198.36 Aligned_cols=164 Identities=38% Similarity=0.629 Sum_probs=141.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
+.++|+|+|++|+|||||+++++++.+ ..+.++.+ +.....+.+++..+.+.+||+||++.+...+..++.++|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 468999999999999999999999887 44445554 3446677888999999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEE 170 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 170 (211)
|||++++.+++.+.. |...+.......++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++++++
T Consensus 81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 81 VYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 999999999999888 5555544443578999999999999777778888889999999999999999999999999999
Q ss_pred HHHHHHc
Q 028292 171 LVLKILD 177 (211)
Q Consensus 171 i~~~~~~ 177 (211)
|.+.+.+
T Consensus 160 l~~~~~~ 166 (167)
T 1kao_A 160 IVRQMNY 166 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9998754
No 59
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2e-33 Score=200.88 Aligned_cols=169 Identities=36% Similarity=0.592 Sum_probs=144.3
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
......+||+|+|++|+|||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.|||+||+..+...+..++..+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 91 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE 91 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence 3345679999999999999999999999887 44555555443 455677888899999999999999999999999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (211)
++++|||++++.+++.+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||+++.|+++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 92 GFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence 9999999999999999887 666666655456899999999999977777888899999999999999999999999999
Q ss_pred HHHHHHHHHHcC
Q 028292 167 CFEELVLKILDT 178 (211)
Q Consensus 167 ~~~~i~~~~~~~ 178 (211)
+|++|.+.+.++
T Consensus 171 l~~~l~~~i~~~ 182 (187)
T 2a9k_A 171 VFFDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 60
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=1.1e-32 Score=197.79 Aligned_cols=171 Identities=33% Similarity=0.536 Sum_probs=133.1
Q ss_pred cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 028292 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84 (211)
Q Consensus 6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (211)
...+..+.++|+|+|.+|||||||+++|++..+ ..+.++.+.. ....+.+++..+.+.+||+||++.+...+..++..
T Consensus 14 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (190)
T 3con_A 14 LYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92 (190)
T ss_dssp -----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTT
T ss_pred ccccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCc
Confidence 344556789999999999999999999999887 4444444433 34567778888999999999999999999999999
Q ss_pred ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164 (211)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (211)
+|++++|||++++.+++.+.. |...+.......++|+++|+||+|+.. +.+..+++.+++...+++++++||+++.|+
T Consensus 93 ~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 170 (190)
T 3con_A 93 GEGFLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGV 170 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred CCEEEEEEECcCHHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 999999999999999998877 666676665456899999999999866 556788889999999999999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 028292 165 EQCFEELVLKILDTP 179 (211)
Q Consensus 165 ~~~~~~i~~~~~~~~ 179 (211)
++++++|.+.+.+.+
T Consensus 171 ~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 171 EDAFYTLVREIRQYR 185 (190)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987643
No 61
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-33 Score=203.92 Aligned_cols=167 Identities=26% Similarity=0.552 Sum_probs=141.4
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
......+||+|+|++|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.||||||++.+...+..++.++|
T Consensus 23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 101 (205)
T 1gwn_A 23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSD 101 (205)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCC
Confidence 4456789999999999999999999999988 55567776655 345677888899999999999999999999999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhC-CcE
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYG-CLF 153 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~~ 153 (211)
++|+|||++++.+|+.+...|+..+.... .++|+++|+||+|+.+ .+.+..+++.+++..++ +++
T Consensus 102 ~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 179 (205)
T 1gwn_A 102 AVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 179 (205)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEE
Confidence 99999999999999998544777776654 5899999999999964 25677888999999888 699
Q ss_pred EEeccC-CCCCHHHHHHHHHHHHHc
Q 028292 154 LECSAK-TRVNVEQCFEELVLKILD 177 (211)
Q Consensus 154 ~~~Sa~-~~~~v~~~~~~i~~~~~~ 177 (211)
+++||+ ++.|++++|++|.+.+..
T Consensus 180 ~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 180 IECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHHHHhh
Confidence 999999 689999999999998874
No 62
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=2.9e-33 Score=199.96 Aligned_cols=165 Identities=27% Similarity=0.559 Sum_probs=141.6
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
....+||+|+|++|||||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999888 55667776655 34567788889999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhC-CcEEE
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYG-CLFLE 155 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 155 (211)
|+|||++++.+|+.+...|...+.... .++|+++|+||+|+.+. +.+..+++.+++..++ +++++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 160 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence 999999999999998555777776654 58999999999999642 5678888999999888 69999
Q ss_pred eccC-CCCCHHHHHHHHHHHHHc
Q 028292 156 CSAK-TRVNVEQCFEELVLKILD 177 (211)
Q Consensus 156 ~Sa~-~~~~v~~~~~~i~~~~~~ 177 (211)
+||+ ++.|++++|++|.+.+.+
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred eeecCCCcCHHHHHHHHHHHHhc
Confidence 9999 689999999999998874
No 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-33 Score=202.42 Aligned_cols=166 Identities=33% Similarity=0.521 Sum_probs=142.9
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
....++|+|+|++|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.+||+||+.. ...+..++..+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 35679999999999999999999999888 45556666444 45577888899999999999887 77788889999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC-CHHHH
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV-NVEQC 167 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~~ 167 (211)
|+|||++++++|+.+.. |+..+.......++|+++|+||+|+.+.+.+..+++..++..++++++++||++|. |++++
T Consensus 103 ilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l 181 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI 181 (196)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence 99999999999999887 66666655545789999999999997777788899999999999999999999999 99999
Q ss_pred HHHHHHHHHcC
Q 028292 168 FEELVLKILDT 178 (211)
Q Consensus 168 ~~~i~~~~~~~ 178 (211)
|++|.+.+.++
T Consensus 182 ~~~l~~~i~~~ 192 (196)
T 2atv_A 182 FYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999998754
No 64
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=7.8e-33 Score=196.56 Aligned_cols=161 Identities=21% Similarity=0.365 Sum_probs=136.1
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+.+||+|+|++|||||||+++|+++.+..+.++.+..+ ...+.+++..+.+.+|||||++. ..+++++|++|+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 467999999999999999999999999866777777443 56677888899999999999875 456788999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCC--CCCcccCHHHHHHHHHHh-CCcEEEeccCCCCCHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDK--ESERVVSKKEGIDFAREY-GCLFLECSAKTRVNVE 165 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~--~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~ 165 (211)
|||++++++|+.+.. |+..+..... ..++|+++|+||+|+ ...+.+..+++.+++... +++++++||++|.|++
T Consensus 79 v~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 157 (178)
T 2iwr_A 79 VFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD 157 (178)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence 999999999999887 5555544332 357999999999999 356678888888888887 6899999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028292 166 QCFEELVLKILDT 178 (211)
Q Consensus 166 ~~~~~i~~~~~~~ 178 (211)
++|++|.+.+.+.
T Consensus 158 ~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 158 RVFQEVAQKVVTL 170 (178)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998754
No 65
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=4.9e-33 Score=201.39 Aligned_cols=169 Identities=27% Similarity=0.482 Sum_probs=137.8
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
......++|+|+|++|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 4556789999999999999999999998887 45556665443 456777888899999999999999999999999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC------------CcccCHHHHHHHHHHhCC-cE
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES------------ERVVSKKEGIDFAREYGC-LF 153 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~ 153 (211)
++|+|||++++.+|+.+...|+..+.... .++|+++|+||+|+.. .+.+..+++..++...++ ++
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY 171 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 99999999999999998755777777654 4899999999999965 356778888899999887 99
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292 154 LECSAKTRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 154 ~~~Sa~~~~~v~~~~~~i~~~~~~~~ 179 (211)
+++||++|.|++++|++|.+.+.+..
T Consensus 172 ~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 172 IECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999999999987543
No 66
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=4.5e-33 Score=203.65 Aligned_cols=168 Identities=32% Similarity=0.590 Sum_probs=125.0
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
..+.++|+|+|++|||||||+++|++..+ ..+.++.+.. ....+.+++..+.+.+|||||++.+...+..++.++|++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 45689999999999999999999998887 4455555433 345677888999999999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHhCC-cEEE
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVSKKEGIDFAREYGC-LFLE 155 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~ 155 (211)
|+|||++++.+|+.+...|+..+.... .++|+++|+||+|+.... .+..+++..++...++ ++++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 187 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE 187 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE
Confidence 999999999999998755777776654 679999999999996643 5677888899999997 9999
Q ss_pred eccCCCCCHHHHHHHHHHHHHcCCC
Q 028292 156 CSAKTRVNVEQCFEELVLKILDTPS 180 (211)
Q Consensus 156 ~Sa~~~~~v~~~~~~i~~~~~~~~~ 180 (211)
+||++|.|++++|++|.+.+.+.+.
T Consensus 188 ~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 188 CSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred ecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999986643
No 67
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=1.1e-32 Score=196.85 Aligned_cols=167 Identities=30% Similarity=0.573 Sum_probs=143.6
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
.+.++|+|+|++|+|||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 3579999999999999999999999887 45555655443 456678899999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEe
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLEC 156 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 156 (211)
+|||++++.+|+.+...|+..+.... .++|+++|+||+|+.+. +.+..+++..++...++ +++++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 159 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence 99999999999998755777777654 48999999999998653 46778888889999997 99999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCC
Q 028292 157 SAKTRVNVEQCFEELVLKILDTPS 180 (211)
Q Consensus 157 Sa~~~~~v~~~~~~i~~~~~~~~~ 180 (211)
||++|.|++++|++|.+.+.+...
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 160 SALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred cCCCccCHHHHHHHHHHHHhcccc
Confidence 999999999999999999976543
No 68
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=3.5e-33 Score=198.75 Aligned_cols=168 Identities=35% Similarity=0.660 Sum_probs=130.6
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCcccccccccccccCccE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (211)
..+.++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++++|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 45679999999999999999999999887 5667788888888888777 566889999999999999999999999999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhhcC---CCCCcEEEEEeCCCCCC-CcccCHHHHHHHHH-HhCCcEEEeccCCCC
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLYST---NQDCIKLLVGNKVDKES-ERVVSKKEGIDFAR-EYGCLFLECSAKTRV 162 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 162 (211)
+|+|||++++.+++.+.. |+..+..... ..++|+++|+||+|+.. .+.+..+++.+++. ..+++++++||++|.
T Consensus 85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 999999999999998877 5555554431 36799999999999953 34567788888887 456899999999999
Q ss_pred CHHHHHHHHHHHHHcC
Q 028292 163 NVEQCFEELVLKILDT 178 (211)
Q Consensus 163 ~v~~~~~~i~~~~~~~ 178 (211)
|++++|++|.+.+.++
T Consensus 164 gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQ 179 (182)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998754
No 69
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=3.3e-32 Score=197.15 Aligned_cols=164 Identities=34% Similarity=0.600 Sum_probs=142.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
...+||+|+|.+|||||||++++.+..+ ..+.++.+..+. ..+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 4679999999999999999999999888 455666666554 34677888899999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEe
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLEC 156 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 156 (211)
+|||++++.+|+.+...|...+.... .++|+++|+||+|+.+. +.+..+++..++...++ +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 99999999999998655887777654 58999999999999765 45778888899999888 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHc
Q 028292 157 SAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 157 Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
||++|.|+++++++|.+.+.+
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 70
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=1.9e-32 Score=198.52 Aligned_cols=163 Identities=37% Similarity=0.629 Sum_probs=142.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeE-----------------------------
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKK----------------------------- 60 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------------------- 60 (211)
...++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 4679999999999999999999999988 5677788878877777777655
Q ss_pred --------EEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 61 --------MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 61 --------~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
+.+.||||||++.+...+..+++.+|++|+|||++++.+++.+.. |+..+.... ++|+++|+||+| .
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~-~~~~i~~~~---~~piilv~NK~D-~ 159 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKT-WVNQLKISS---NYIIILVANKID-K 159 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHH-HHHHHHHHS---CCEEEEEEECTT-C
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHhhC---CCcEEEEEECCC-c
Confidence 889999999999999999999999999999999999999998877 666665543 399999999999 5
Q ss_pred CCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292 133 SERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
..+.+..+++.+++...+++++++||+++.|+++++++|.+.+.++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 160 NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 6667888899999999999999999999999999999999988753
No 71
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=4.5e-32 Score=190.00 Aligned_cols=162 Identities=35% Similarity=0.601 Sum_probs=139.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMV 91 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv 91 (211)
.++|+++|++|+|||||+++|.+..+ ..+.++.+. .....+.+++..+.+.+||+||+..+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccce-EEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 58999999999999999999999887 444455443 3355677788889999999999999999999999999999999
Q ss_pred EECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Q 028292 92 YDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 92 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 171 (211)
||++++.+++.+.. |...+.......++|+++|+||+|+.+ +....+++.+++...+++++++||++|.|+++++++|
T Consensus 82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 82 FAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999998877 666666655456899999999999866 4567788889999999999999999999999999999
Q ss_pred HHHHHc
Q 028292 172 VLKILD 177 (211)
Q Consensus 172 ~~~~~~ 177 (211)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998864
No 72
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=1.9e-33 Score=204.39 Aligned_cols=167 Identities=25% Similarity=0.403 Sum_probs=111.3
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhC--CC-CCCCCcceeeeEEEEEEECCe--EEEEEEEeCCCcccccccccccccCc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSD--TF-EELSPTIGVDFKIKHVALGGK--KMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~--~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
...++|+|+|++|||||||+++|++. .+ ..+.++.+.++....+.+++. .+.+.+|||||++.+...+..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 57799999999999999999999998 66 566777777777778888877 88999999999999999999999999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcC--CCCCcEEEEEeCCCCCC-CcccCHHHHHHHHHHhCCcEEEeccCC-C
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYST--NQDCIKLLVGNKVDKES-ERVVSKKEGIDFAREYGCLFLECSAKT-R 161 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~ 161 (211)
|++|+|||++++.+|+.+.. |+..+..... ..++|+++|+||+|+.+ .+.+..+++.+++..++++++++||++ +
T Consensus 98 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 176 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKA-WFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPG 176 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHH-HHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC----
T ss_pred cEEEEEEECCCHHHHHHHHH-HHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCC
Confidence 99999999999999999887 7777776652 16899999999999987 777888999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHcC
Q 028292 162 VNVEQCFEELVLKILDT 178 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~~~ 178 (211)
.|++++|++|.+.+.+.
T Consensus 177 ~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 177 KDADAPFLSIATTFYRN 193 (208)
T ss_dssp ---CHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999999999988754
No 73
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.6e-32 Score=196.81 Aligned_cols=166 Identities=33% Similarity=0.567 Sum_probs=138.8
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
...+||+|+|.+|||||||+++|++..+ ..+.++.+..+. ..+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 4678999999999999999999999888 445566655544 34677888899999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEe
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLEC 156 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 156 (211)
+|||++++.+|+.+...|...+.... .++|+++|+||+|+.+. +.+..+++..++...++ +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 99999999999998555777776654 58999999999999654 45677888889988888 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCC
Q 028292 157 SAKTRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 157 Sa~~~~~v~~~~~~i~~~~~~~~ 179 (211)
||++|.|+++++++|.+.+.+..
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSCC
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999988653
No 74
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.7e-33 Score=194.91 Aligned_cols=164 Identities=30% Similarity=0.457 Sum_probs=137.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
+.++|+|+|++|+|||||+++|++..+ ..+.++.+.++ ...+..++..+.+.+|||||+..+...+..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 469999999999999999999999887 45556655444 3445678888999999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
|||++++.+++.+.. |...+... ....++|+++|+||+|+.+.+.+...+...++..++++++++||++|.|++++++
T Consensus 81 v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (172)
T 2erx_A 81 VYSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 159 (172)
T ss_dssp EEETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence 999999999988877 44444433 2235799999999999977777888888889999999999999999999999999
Q ss_pred HHHHHHHc
Q 028292 170 ELVLKILD 177 (211)
Q Consensus 170 ~i~~~~~~ 177 (211)
+|.+.+..
T Consensus 160 ~l~~~~~~ 167 (172)
T 2erx_A 160 ELLNLEKR 167 (172)
T ss_dssp HHHHTCCS
T ss_pred HHHHHHhh
Confidence 99987654
No 75
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.5e-35 Score=211.47 Aligned_cols=168 Identities=58% Similarity=0.948 Sum_probs=139.5
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccE
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQG 87 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~ 87 (211)
..++.+||+|+|.+|||||||+++|++..+ ..+.++.+.++....+.+++..+.+.||||||++.+...+..+++++|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 346789999999999999999999999887 4556777778888888999999999999999999999999999999999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC 167 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 167 (211)
+|+|||++++.+|+.+.. |+..+.... ..++|+++|+||+|+.+.+.+..+++..++..++++++++||+++.|++++
T Consensus 109 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQ-WLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp EEECC-CCCSHHHHHHHH-HHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999887 777776554 468999999999999877777777788899999999999999999999999
Q ss_pred HHHHHHHHHcC
Q 028292 168 FEELVLKILDT 178 (211)
Q Consensus 168 ~~~i~~~~~~~ 178 (211)
|.+|.+.+.++
T Consensus 187 ~~~l~~~l~~~ 197 (199)
T 3l0i_B 187 FMTMAAEIKKR 197 (199)
T ss_dssp HHHHTTTTTTT
T ss_pred HHHHHHHHHHh
Confidence 99998877643
No 76
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=3.4e-33 Score=205.22 Aligned_cols=173 Identities=34% Similarity=0.552 Sum_probs=150.3
Q ss_pred ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccccc
Q 028292 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR 83 (211)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 83 (211)
..+......+||+|+|.+|||||||+++++.+.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++
T Consensus 7 ~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 86 (221)
T 3gj0_A 7 AAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI 86 (221)
T ss_dssp CSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHT
T ss_pred ccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHh
Confidence 4455667889999999999999999999877765 667788899999999999999999999999999999999999999
Q ss_pred CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN 163 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (211)
++|++|+|||++++.+|+.+.. |+..+.... .++|+++|+||+|+.+.... .+...++...+++++++||++|.|
T Consensus 87 ~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~g 161 (221)
T 3gj0_A 87 QAQCAIIMFDVTSRVTYKNVPN-WHRDLVRVC--ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYN 161 (221)
T ss_dssp TCCEEEEEEETTCHHHHHTHHH-HHHHHHHHS--TTCCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGGTBT
T ss_pred cCCEEEEEEECCCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999999999999887 776666654 58999999999999654432 255567888899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcc
Q 028292 164 VEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 164 v~~~~~~i~~~~~~~~~~~ 182 (211)
++++|.+|.+.+.......
T Consensus 162 i~~l~~~l~~~l~~~~~~~ 180 (221)
T 3gj0_A 162 FEKPFLWLARKLIGDPNLE 180 (221)
T ss_dssp TTHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHhCcccc
Confidence 9999999999998876544
No 77
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=2.9e-32 Score=196.13 Aligned_cols=167 Identities=26% Similarity=0.368 Sum_probs=135.9
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCC--CCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc-ccccccccccCccE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDT--FEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-FRTLTSSYYRGAQG 87 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~d~ 87 (211)
...+||+++|++|||||||+++|++.. +....++.+.++....+.+++..+.+.+|||+|... +..++..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 456999999999999999999999643 333345566677777788899999999999999766 45566777888999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHH
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQC 167 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 167 (211)
+++|||++++++|+.+.. |...+.......++|+++|+||+|+...+.+..++...++..++++++++||++|.||+++
T Consensus 84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 999999999999999887 5555554433468999999999999776777788888888888999999999999999999
Q ss_pred HHHHHHHHHcC
Q 028292 168 FEELVLKILDT 178 (211)
Q Consensus 168 ~~~i~~~~~~~ 178 (211)
|++|.+.+...
T Consensus 163 f~~l~~~~~~~ 173 (192)
T 2cjw_A 163 FEGIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988643
No 78
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=1.6e-32 Score=193.46 Aligned_cols=162 Identities=22% Similarity=0.347 Sum_probs=128.7
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
..+.++|+|+|++|+|||||+++|.+..+..+.++.+... ..+.++ ...+.+|||||++.+...+..+++++|++|
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 4567999999999999999999999998876777776443 344444 467999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH-----HHHHhCCcEEEeccCCCCCH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID-----FAREYGCLFLECSAKTRVNV 164 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v 164 (211)
+|+|++++.+|.....++...+.... ..++|+++|+||+|+.+... .++... ++...+++++++||++|.|+
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGL 156 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCH
Confidence 99999999999988874544443222 46899999999999965432 222222 12234568999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028292 165 EQCFEELVLKILDT 178 (211)
Q Consensus 165 ~~~~~~i~~~~~~~ 178 (211)
++++++|.+.+.++
T Consensus 157 ~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 157 DEAMEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999998764
No 79
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=3.5e-33 Score=198.89 Aligned_cols=164 Identities=31% Similarity=0.647 Sum_probs=127.1
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
.+.+||+|+|++|+|||||++++.+..+ ..+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 4579999999999999999999999887 445555554332 23445667788899999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc----------cCHHHHHHHHHHhCC-cEEEecc
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV----------VSKKEGIDFAREYGC-LFLECSA 158 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa 158 (211)
+|||++++.+|+.+...|...+.... .++|+++|+||+|+.+.+. +..+++.+++..+++ +++++||
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 99999999999998855887777664 4899999999999866544 477888899999996 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHc
Q 028292 159 KTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 159 ~~~~~v~~~~~~i~~~~~~ 177 (211)
++|.|++++|++|.+.+.+
T Consensus 163 ~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTCTTHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 80
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=3.1e-32 Score=197.77 Aligned_cols=162 Identities=30% Similarity=0.565 Sum_probs=137.5
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
.+.+||+|+|.+|||||||++++++..+ ..+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++++|++|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4679999999999999999999999888 44555554 445566777888899999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc------------cCHHHHHHHHHHhCC-cEEEe
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV------------VSKKEGIDFAREYGC-LFLEC 156 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~~~~~ 156 (211)
+|||++++.+|+.+...|...+.... .++|+++|+||+|+.+... +..+++..++...++ +++++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 99999999999998755888777664 6899999999999865443 778888899999886 59999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 028292 157 SAKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 157 Sa~~~~~v~~~~~~i~~~~ 175 (211)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998764
No 81
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=5.2e-33 Score=200.42 Aligned_cols=168 Identities=22% Similarity=0.219 Sum_probs=134.9
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCC-----------CCCcceeeeEEEEE-EECCeEEEEEEEeCCCcccc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-----------LSPTIGVDFKIKHV-ALGGKKMKLAIWDTAGQERF 74 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~ 74 (211)
.......+||+|+|++|||||||++.+.+..... +.++.+.++....+ .+++..+.+.+|||||++.+
T Consensus 8 ~~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 87 (198)
T 3t1o_A 8 FANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY 87 (198)
T ss_dssp TTTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC
T ss_pred hhccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH
Confidence 3455688999999999999999997776644333 23455555544444 56778899999999999999
Q ss_pred cccccccccCccEEEEEEECCC------hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH
Q 028292 75 RTLTSSYYRGAQGIIMVYDVTR------RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE 148 (211)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 148 (211)
...+..+++++|++|+|||+++ .++|+.+.. |+..+.. ...++|+++|+||+|+.+. +..+++.+++..
T Consensus 88 ~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~-~l~~~~~--~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~ 162 (198)
T 3t1o_A 88 NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYGL--TLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDP 162 (198)
T ss_dssp SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTTC--CTTSSCEEEEEECTTSTTC--CCHHHHHHHHCT
T ss_pred HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHH-HHHhhcc--ccCCCCEEEEEEchhcccc--cCHHHHHHHHHh
Confidence 9999999999999999999994 456666555 4444421 2478999999999998654 778888999999
Q ss_pred hCC-cEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292 149 YGC-LFLECSAKTRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 149 ~~~-~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 179 (211)
.++ +++++||++|.|++++|++|.+.+.++.
T Consensus 163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 163 EGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp TCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 999 9999999999999999999999988653
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=2.8e-32 Score=196.95 Aligned_cols=172 Identities=13% Similarity=0.223 Sum_probs=127.6
Q ss_pred CccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-C-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccccc
Q 028292 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-E-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSY 81 (211)
Q Consensus 4 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 81 (211)
++...+....++|+|+|++|||||||+++|++..+ . .+.++.+.... .+. ...+.+.||||||++.+...+..+
T Consensus 8 ~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (199)
T 4bas_A 8 HHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETY 83 (199)
T ss_dssp --------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGG
T ss_pred cccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHH
Confidence 34456777899999999999999999999999988 3 45777774433 232 345789999999999999999999
Q ss_pred ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcC------CCCCcEEEEEeCCCCCCCcc---cCHHHHHHHH-HHhCC
Q 028292 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST------NQDCIKLLVGNKVDKESERV---VSKKEGIDFA-REYGC 151 (211)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~------~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~-~~~~~ 151 (211)
++++|++|+|||++++++|+.+..++...+..... ..++|+++|+||+|+..... +......... ...++
T Consensus 84 ~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 163 (199)
T 4bas_A 84 YDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPF 163 (199)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCE
T ss_pred HhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCee
Confidence 99999999999999999999988855544432110 13899999999999966532 1111111111 34667
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292 152 LFLECSAKTRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 152 ~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 179 (211)
+++++||++|.|++++|++|.+.+.+..
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 164 VIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988653
No 83
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.98 E-value=2.6e-31 Score=190.82 Aligned_cols=157 Identities=24% Similarity=0.318 Sum_probs=126.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+.++|+++|++|||||||++++.+..+..+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++|+
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45689999999999999999999999887777777754 44556665 789999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH------------hCCcEEEecc
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE------------YGCLFLECSA 158 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa 158 (211)
|||++++++|+.+.. |...+.......++|+++|+||+|+.+ .+..+++.+.... .+++++++||
T Consensus 97 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 97 LVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 999999999999887 444443332246899999999999965 4556666555432 3468999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028292 159 KTRVNVEQCFEELVLK 174 (211)
Q Consensus 159 ~~~~~v~~~~~~i~~~ 174 (211)
++|.|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999999754
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.98 E-value=1.2e-31 Score=193.90 Aligned_cols=157 Identities=20% Similarity=0.296 Sum_probs=120.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+.++|+++|++|||||||++++.+..+..+.++.+.+. ..+.+++ +.+.+|||||++.+...+..+++++|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 456899999999999999999999988866777777653 4555565 789999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----------------hCCcE
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE-----------------YGCLF 153 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~ 153 (211)
|||++++++|+.+.. |+..+.......++|+++|+||+|+.. .+..+++.++... .++++
T Consensus 99 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 99 LVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 999999999999888 444443332246899999999999965 4566677666542 24579
Q ss_pred EEeccCCCCCHHHHHHHHHHH
Q 028292 154 LECSAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 154 ~~~Sa~~~~~v~~~~~~i~~~ 174 (211)
+++||++|.|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999999764
No 85
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.98 E-value=2e-32 Score=191.81 Aligned_cols=157 Identities=22% Similarity=0.401 Sum_probs=121.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEE
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYD 93 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d 93 (211)
+||+++|++|||||||+++++++.+..+.|+.+.. ...+.. ..+.+.+|||||++.+...+..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999998886666776633 333333 34679999999999999999999999999999999
Q ss_pred CCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCCHHHHH
Q 028292 94 VTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 94 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~~~~ 168 (211)
++++++|+.+..++..... .....++|+++|+||+|+.+.. ..++..... ...+++++++||++|.|+++++
T Consensus 77 ~~~~~s~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLA-EDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh-chhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 9999999988874444333 2224689999999999996542 222222211 1234579999999999999999
Q ss_pred HHHHHHHHc
Q 028292 169 EELVLKILD 177 (211)
Q Consensus 169 ~~i~~~~~~ 177 (211)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999988754
No 86
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.98 E-value=4.7e-32 Score=194.38 Aligned_cols=164 Identities=23% Similarity=0.361 Sum_probs=126.2
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
....+.++|+|+|++|||||||+++|++..+ ..+.++.+.++.. +.. ..+.+.+||+||++.+...+..++.++|
T Consensus 17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (188)
T 1zd9_A 17 RGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVS 92 (188)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCS
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEe--CCEEEEEEECCCCHhHHHHHHHHHccCC
Confidence 3345789999999999999999999999888 4667777766543 322 3577999999999999999999999999
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEeccCCC
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECSAKTR 161 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 161 (211)
++|+|||++++++++.+..++...+.... ..++|+++|+||+|+.... ..++..+... ..+++++++||++|
T Consensus 93 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 169 (188)
T 1zd9_A 93 AIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEK 169 (188)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCC
Confidence 99999999999999998884444443222 4789999999999996542 2222222111 23457999999999
Q ss_pred CCHHHHHHHHHHHHHcC
Q 028292 162 VNVEQCFEELVLKILDT 178 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~~~ 178 (211)
.|++++|++|.+.+.++
T Consensus 170 ~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 170 DNIDITLQWLIQHSKSR 186 (188)
T ss_dssp TTHHHHHHHHHHTCC--
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999877543
No 87
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=1.8e-31 Score=190.17 Aligned_cols=163 Identities=23% Similarity=0.340 Sum_probs=124.3
Q ss_pred ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 028292 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84 (211)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (211)
+......+.++|+|+|.+|||||||+++|++..+..+.++.+.... .+.+++ +.+.+||+||++.+...+..++.+
T Consensus 13 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~ 88 (181)
T 2h17_A 13 GLVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTN 88 (181)
T ss_dssp --------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTT
T ss_pred CccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcc
Confidence 3455566889999999999999999999999988666677775543 344444 789999999999999999999999
Q ss_pred ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccC
Q 028292 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAK 159 (211)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 159 (211)
+|++|+|||++++++|+.+..++....... ...++|+++|+||+|+... ...++..+.. ...+++++++||+
T Consensus 89 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 165 (181)
T 2h17_A 89 TEFVIVVVDSTDRERISVTREELYKMLAHE-DLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCAL 165 (181)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCC
Confidence 999999999999999999888454444322 2478999999999999653 2333433332 2234589999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028292 160 TRVNVEQCFEELVLK 174 (211)
Q Consensus 160 ~~~~v~~~~~~i~~~ 174 (211)
+|.|++++|++|.+.
T Consensus 166 ~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 166 TGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTBTHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHhh
Confidence 999999999999764
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=1.4e-30 Score=186.16 Aligned_cols=161 Identities=24% Similarity=0.353 Sum_probs=128.2
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+.++|+++|++|||||||++++++.....+.++.+.. ...+.++ .+.+.+|||||++.+...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 57799999999999999999999988866667777744 3344444 4679999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEeccCCCCCHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~ 165 (211)
|+|++++.+|+.+..++..... .....++|+++|+||+|+.+... .++..+... ..+++++++||++|.|++
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLV-EERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHHHHHHHHh-ChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999998874444443 32246899999999999965432 333332221 245689999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028292 166 QCFEELVLKILDT 178 (211)
Q Consensus 166 ~~~~~i~~~~~~~ 178 (211)
+++++|.+.+.++
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998765
No 89
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=8.6e-32 Score=193.66 Aligned_cols=162 Identities=23% Similarity=0.365 Sum_probs=120.1
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
...+.++|+|+|++|||||||+++++++.+..+.++.+ +....+... .+.+.+|||||++.+...+..++.++|++
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG--FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETT--EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCc--eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 34577999999999999999999999888755555555 333334443 47799999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCC
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVN 163 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~ 163 (211)
|+|||++++++|+.+..++..... .....++|+++|+||+|+.+.. ..++..+.. ...+++++++||++|.|
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~-~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g 177 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQ-EDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTG 177 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHT-CGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred EEEEECCCHHHHHHHHHHHHHHhc-ccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence 999999999999998874444433 2224689999999999996542 222222211 12345799999999999
Q ss_pred HHHHHHHHHHHHHc
Q 028292 164 VEQCFEELVLKILD 177 (211)
Q Consensus 164 v~~~~~~i~~~~~~ 177 (211)
+++++++|.+.+.+
T Consensus 178 i~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 178 LYDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988754
No 90
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.4e-31 Score=189.09 Aligned_cols=166 Identities=22% Similarity=0.325 Sum_probs=124.5
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+.++|+|+|++|||||||+++|+++.+..+.++.+... ..+.+++ +.+.+|||||++.+...+..++.++|++|+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 467999999999999999999999888766666666443 3444444 789999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEeccCCCCCHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~ 165 (211)
|+|++++++|+.+.. |+..+.......++|+++|+||+|+.+. ...+++.+... ..+++++++||++|.|++
T Consensus 90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 90 VVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 999999999999888 4444443322468999999999999653 23444443332 245689999999999999
Q ss_pred HHHHHHHHHHHcCCCccc
Q 028292 166 QCFEELVLKILDTPSLLS 183 (211)
Q Consensus 166 ~~~~~i~~~~~~~~~~~~ 183 (211)
+++++|.+.+.......+
T Consensus 167 ~l~~~l~~~~~~~~~~~~ 184 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLEHHH 184 (187)
T ss_dssp HHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 999999999876655443
No 91
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=1.1e-31 Score=192.58 Aligned_cols=162 Identities=20% Similarity=0.325 Sum_probs=127.3
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+.++|+|+|++|||||||++++.++.+..+.++.+.. ...+.++ .+.+.+|||||++.+...+..+++++|++|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 46899999999999999999999988875566676643 3344444 4679999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHH-----HHHhCCcEEEeccCCCCCHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDF-----AREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~v~ 165 (211)
|+|++++++++.+..++...+. .....++|+++|+||+|+.+... .++..+. +...+++++++||+++.|++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLD-EDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHT-CSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHh-hhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999988874444443 22246899999999999965432 2222221 12234579999999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028292 166 QCFEELVLKILDTP 179 (211)
Q Consensus 166 ~~~~~i~~~~~~~~ 179 (211)
+++++|.+.+.++.
T Consensus 173 ~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 173 EGMDWLVERLREQG 186 (189)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987653
No 92
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=186.87 Aligned_cols=164 Identities=20% Similarity=0.282 Sum_probs=125.6
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCC-C-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDT-F-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG 84 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~ 84 (211)
.....+.++|+|+|.+|||||||+++|++.. + ..+.++.+ +....+.+++ +.+.+|||||++.+...+..++.+
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ 90 (190)
T 2h57_A 15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKE 90 (190)
T ss_dssp ------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGG
T ss_pred ccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhc
Confidence 3445578999999999999999999999887 3 55666666 4444555554 679999999999999999999999
Q ss_pred ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCC--CCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEec
Q 028292 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTN--QDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECS 157 (211)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~S 157 (211)
+|++|+|||++++.+|+.+..++..... .... .++|+++|+||+|+... ...++..++.. ..+++++++|
T Consensus 91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~S 167 (190)
T 2h57_A 91 GQAIIFVIDSSDRLRMVVAKEELDTLLN-HPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASD 167 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHH-STTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECB
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHh-ChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEcc
Confidence 9999999999999999998874444443 3212 68999999999999653 34455555443 2356899999
Q ss_pred cCCCCCHHHHHHHHHHHHHc
Q 028292 158 AKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 158 a~~~~~v~~~~~~i~~~~~~ 177 (211)
|++|.|+++++++|.+.+.+
T Consensus 168 a~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 168 AIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTTTBTHHHHHHHHHHHC--
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=5.9e-32 Score=192.78 Aligned_cols=161 Identities=25% Similarity=0.349 Sum_probs=124.9
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+.++|+++|++|||||||++++.+..+..+.++.|.. ...+.++ .+.+.+|||||++.+...+..++.++|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 46799999999999999999999988776666777743 3344455 4679999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-----HHhCCcEEEeccCCCCCHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-----REYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~v~ 165 (211)
|||++++++|+.+..++...+.... ..++|+++|+||+|+.+... .++..+.. ...+++++++||++|.|++
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 90 VIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 9999999999988774444433222 46899999999999965532 22332221 1234579999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028292 166 QCFEELVLKILDT 178 (211)
Q Consensus 166 ~~~~~i~~~~~~~ 178 (211)
++|++|.+.+.++
T Consensus 167 ~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 167 DGMNWVCKNVNAK 179 (181)
T ss_dssp HHHHHHHHTC---
T ss_pred HHHHHHHHHHHhc
Confidence 9999999877543
No 94
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=7e-30 Score=184.62 Aligned_cols=166 Identities=45% Similarity=0.773 Sum_probs=144.1
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
+..++|+|+|++|||||||++++++..+ ..+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 4679999999999999999999999887 566678788888888899999999999999999999888888899999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHH
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~ 169 (211)
+|+|+++..+++.+.. |...+.... ..+.|+++++||+|+.+.+.+...++..++...++.++++||+++.|++++++
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 83 LVYDIAKHLTYENVER-WLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFK 160 (199)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhc-CCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999988776 555554443 45789999999999977777778888999999999999999999999999999
Q ss_pred HHHHHHHcC
Q 028292 170 ELVLKILDT 178 (211)
Q Consensus 170 ~i~~~~~~~ 178 (211)
+|.+.+.+.
T Consensus 161 ~l~~~~~~~ 169 (199)
T 2f9l_A 161 NILTEIYRI 169 (199)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998753
No 95
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=2.5e-29 Score=180.65 Aligned_cols=167 Identities=46% Similarity=0.792 Sum_probs=145.8
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGA 85 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 85 (211)
+.+.+..++|+|+|++|||||||++++.+..+ ..+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++.+
T Consensus 23 ~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~ 102 (191)
T 1oix_A 23 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGA 102 (191)
T ss_dssp -CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTC
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcC
Confidence 34456789999999999999999999999887 56778888888888899999999999999999998888888888999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
+++++|+|.++..+|+.+.. |...+.... ..+.|+++++||+|+.+.+.+...++..++...++.++++||+++.+++
T Consensus 103 ~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~ 180 (191)
T 1oix_A 103 VGALLVYDIAKHLTYENVER-WLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVE 180 (191)
T ss_dssp CEEEEEEETTCHHHHHTHHH-HHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999888766 555554433 4578999999999997767777888999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 028292 166 QCFEELVLKI 175 (211)
Q Consensus 166 ~~~~~i~~~~ 175 (211)
+++++|.+.+
T Consensus 181 ~l~~~l~~~i 190 (191)
T 1oix_A 181 AAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 96
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=3.9e-31 Score=188.54 Aligned_cols=161 Identities=23% Similarity=0.340 Sum_probs=123.9
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+.++|+|+|++|||||||+++++++.+..+.++.+... ..+.+++ ..+.+||+||+..+...+..++.++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 578999999999999999999999888766667777443 3444444 779999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-----hCCcEEEeccCCCCCHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE-----YGCLFLECSAKTRVNVE 165 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~v~ 165 (211)
|+|++++.+++.+.. |...+.......++|+++|+||+|+.+. ...++..+.... .+++++++||++|.|++
T Consensus 92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 92 VVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 999999999998887 4444433322478999999999998654 233343333221 23479999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028292 166 QCFEELVLKILDT 178 (211)
Q Consensus 166 ~~~~~i~~~~~~~ 178 (211)
+++++|.+.+.++
T Consensus 169 ~l~~~l~~~~~~~ 181 (183)
T 1moz_A 169 EGLDWLIDVIKEE 181 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=2e-29 Score=195.54 Aligned_cols=165 Identities=29% Similarity=0.566 Sum_probs=142.6
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
...++|+++|.+|+|||||++++++..+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 4568999999999999999999998887 45556665444 456678889999999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC------------cccCHHHHHHHHHHhCC-cEEEe
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE------------RVVSKKEGIDFAREYGC-LFLEC 156 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 156 (211)
+|||++++.+|+.+...|...+.... .++|+++|+||+|+.+. +.+..+++..++...++ +++++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 99999999999998755777777654 48999999999998543 56778889999999997 99999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcC
Q 028292 157 SAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 157 Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
||++|.|++++|++|.+.+...
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999988753
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=7.1e-31 Score=189.43 Aligned_cols=165 Identities=22% Similarity=0.232 Sum_probs=119.4
Q ss_pred ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeee--EEEEEEEC-CeEEEEEEEeCCCcccccccc---
Q 028292 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDF--KIKHVALG-GKKMKLAIWDTAGQERFRTLT--- 78 (211)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~--- 78 (211)
....+..+.+||+|+|++|||||||++++.+..... ++.+.++ ......+. +..+.+.+|||+|++.+....
T Consensus 12 ~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 89 (196)
T 3llu_A 12 ENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY 89 (196)
T ss_dssp --------CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred CCCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence 345667789999999999999999999888754333 3333333 33333333 566889999999999987665
Q ss_pred cccccCccEEEEEEECCCh--hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC-------CcccCHHHHHHHHH--
Q 028292 79 SSYYRGAQGIIMVYDVTRR--DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES-------ERVVSKKEGIDFAR-- 147 (211)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------~~~~~~~~~~~~~~-- 147 (211)
..+++++|++|+|||++++ +++..+.. |+..+... ..++|+++|+||+|+.+ .+.+..++..+++.
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~ 166 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAG 166 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHH-HHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHH-HHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhh
Confidence 7899999999999999997 55555544 33333222 46899999999999854 33455556667777
Q ss_pred --HhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292 148 --EYGCLFLECSAKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 148 --~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 175 (211)
..+++++++||++ .|++++|..|++.+
T Consensus 167 ~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 167 LEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 6678999999999 99999999999865
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=2.2e-32 Score=198.52 Aligned_cols=162 Identities=30% Similarity=0.586 Sum_probs=135.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
.+.+||+|+|.+|||||||+++|++..+ ..+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++.++|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4679999999999999999999998877 44445554333 444566777788999999999999999999999999999
Q ss_pred EEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc------------ccCHHHHHHHHHHhCC-cEEEe
Q 028292 90 MVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER------------VVSKKEGIDFAREYGC-LFLEC 156 (211)
Q Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 156 (211)
+|||++++.+|+.+...|+..+.... .++|+++|+||+|+.+.. .+..+++..++...++ +++++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 99999999999988754777776543 389999999999996543 4566677788888887 99999
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 028292 157 SAKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 157 Sa~~~~~v~~~~~~i~~~~ 175 (211)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999998765
No 100
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=1.9e-30 Score=185.43 Aligned_cols=164 Identities=21% Similarity=0.374 Sum_probs=121.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC--CC-CCCCCcceeeeEEEEEEE---CCeEEEEEEEeCCCcccccccccccccCcc
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD--TF-EELSPTIGVDFKIKHVAL---GGKKMKLAIWDTAGQERFRTLTSSYYRGAQ 86 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~--~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d 86 (211)
.+||+|+|++|||||||+++|.+. .+ ..+.++.+.++....+.+ ++..+.+.+|||+|++.+...+..++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 489999999999999999999985 34 446677776666555443 345678999999999999888899999999
Q ss_pred EEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC---HHHHHHHHHHhCCc----EEEecc
Q 028292 87 GIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS---KKEGIDFAREYGCL----FLECSA 158 (211)
Q Consensus 87 ~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa 158 (211)
++++|||++++ .+|+.+.. |+..+.... .++|+++|+||+|+.+.+.+. .+....++..++++ ++++||
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKP-WLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNA 158 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHH-HHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCT
T ss_pred EEEEEEeCCcchhHHHHHHH-HHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEec
Confidence 99999999998 47887776 666655443 579999999999986544332 23344555566776 999999
Q ss_pred CCCC-CHHHHHHHHHHHHHcCC
Q 028292 159 KTRV-NVEQCFEELVLKILDTP 179 (211)
Q Consensus 159 ~~~~-~v~~~~~~i~~~~~~~~ 179 (211)
+++. +++++++.|.+.+.+..
T Consensus 159 ~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 159 TEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp TSCCHHHHHHHHHHHHHHHCC-
T ss_pred ccCchhHHHHHHHHHHHHhccc
Confidence 9997 99999999999887644
No 101
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.8e-30 Score=199.88 Aligned_cols=161 Identities=21% Similarity=0.351 Sum_probs=121.2
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+.++|+|+|++|||||||+++|.+..+....++.+..+. .+.. ..+.+.||||||++.+..++..+++.+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~--~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE--EEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE--EEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4668999999999999999999999887444455554333 3333 34679999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEeccCCCCCHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~ 165 (211)
|||++++.+|..+..++...+.... ..++|+++|+||+|+.+... .++...... ..+++++++||++|.||+
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 9999999999998886666655433 56899999999999965432 222222211 124579999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028292 166 QCFEELVLKILDT 178 (211)
Q Consensus 166 ~~~~~i~~~~~~~ 178 (211)
++|++|.+.+.++
T Consensus 316 el~~~l~~~l~~~ 328 (329)
T 3o47_A 316 EGLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=8.9e-30 Score=186.00 Aligned_cols=162 Identities=18% Similarity=0.233 Sum_probs=117.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCcccccc-cccccccCccEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQERFRT-LTSSYYRGAQGI 88 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~d~~ 88 (211)
.+.++|+|+|++|||||||+++|++..+....++.+..+.. +.+++. .+.+.+|||||+..+.. ++..+++++|++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 45789999999999999999999998885544554444333 555544 57899999999998887 788889999999
Q ss_pred EEEEECCChh-cHHHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHH-----------------
Q 028292 89 IMVYDVTRRD-TFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKESERVVS--KKEGIDFAR----------------- 147 (211)
Q Consensus 89 ilv~d~~~~~-s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~----------------- 147 (211)
|+|||+++.. ++.....+|...+... ....++|+++|+||+|+....... .+.+.+...
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~ 162 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 162 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence 9999999864 5666666566665542 224579999999999996654321 111111111
Q ss_pred ----------------Hh--CCcEEEeccCCC------CCHHHHHHHHHHH
Q 028292 148 ----------------EY--GCLFLECSAKTR------VNVEQCFEELVLK 174 (211)
Q Consensus 148 ----------------~~--~~~~~~~Sa~~~------~~v~~~~~~i~~~ 174 (211)
.. +++|+++||++| .||+++|++|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.96 E-value=2.7e-29 Score=204.78 Aligned_cols=167 Identities=23% Similarity=0.351 Sum_probs=126.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
.+.++|+|+|.+|||||||+++|++..+..+.+|.+..+.. +.+ ..+.+.||||+|++.+..++..++.++|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEE--EES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEE--EEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 46799999999999999999999999886667777755443 333 44689999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHH-----HhCCcEEEeccCCCCCHH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAR-----EYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~ 165 (211)
|||++++++|+.+..++...+.. ....++|+++|+||+|+.+.. ..++...... ..+++++++||++|+|++
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~-~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIIND-REMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTS-GGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEECcchhHHHHHHHHHHHHhhh-hhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 99999999999998855555443 224689999999999986543 2222222111 123469999999999999
Q ss_pred HHHHHHHHHHHcCCCcccC
Q 028292 166 QCFEELVLKILDTPSLLSE 184 (211)
Q Consensus 166 ~~~~~i~~~~~~~~~~~~~ 184 (211)
++|++|.+.+.+.....+.
T Consensus 473 ~l~~~l~~~~~~~~~~~~~ 491 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLAAALE 491 (497)
T ss_dssp HHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHhcCCCCCc
Confidence 9999999988766555543
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=190.25 Aligned_cols=167 Identities=23% Similarity=0.299 Sum_probs=121.9
Q ss_pred ccccCeeEEEEEEcCC---------CCcHHHHHHHHhhC---CC-CCCCCcc-eeeeEEEE--------------EEECC
Q 028292 7 QQEFDYLFKLLLIGDS---------GVGKSTLLLSFTSD---TF-EELSPTI-GVDFKIKH--------------VALGG 58 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~---------~~GKstli~~l~~~---~~-~~~~~~~-~~~~~~~~--------------~~~~~ 58 (211)
.....+.+||+|+|.+ |||||||+++|++. .+ ..+.++. +.++.... ..+++
T Consensus 13 ~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 92 (255)
T 3c5h_A 13 NLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDC 92 (255)
T ss_dssp TSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC------
T ss_pred CCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCC
Confidence 3455678999999999 99999999999984 44 3444443 22222111 12456
Q ss_pred eEEEEEEEe-----------------------CCCccccccccccccc---------------------CccEEEEEEEC
Q 028292 59 KKMKLAIWD-----------------------TAGQERFRTLTSSYYR---------------------GAQGIIMVYDV 94 (211)
Q Consensus 59 ~~~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~ilv~d~ 94 (211)
..+.+.||| ++|++.+..++..++. ++|++|+|||+
T Consensus 93 ~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~ 172 (255)
T 3c5h_A 93 VECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDV 172 (255)
T ss_dssp ---CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEEC
T ss_pred cEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEEC
Confidence 778899999 6677777777777777 79999999999
Q ss_pred CCh--hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-hCCcEEEeccCCCCCHHHHHHHH
Q 028292 95 TRR--DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE-YGCLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 95 ~~~--~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~~~~~i 171 (211)
+++ .+|+.+.. |+..+.......++|+++|+||+|+.+.+.+ +++..++.. .+++++++||++|.|++++|++|
T Consensus 173 t~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 173 SRGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp BC----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred CCCchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence 998 99999887 6666654422467999999999999655444 566677766 47899999999999999999999
Q ss_pred HHHHH
Q 028292 172 VLKIL 176 (211)
Q Consensus 172 ~~~~~ 176 (211)
.+.+.
T Consensus 250 ~~~l~ 254 (255)
T 3c5h_A 250 VQLID 254 (255)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98764
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=1.3e-27 Score=169.48 Aligned_cols=160 Identities=21% Similarity=0.239 Sum_probs=119.3
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEE
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGI 88 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ 88 (211)
..+.++|+|+|++|||||||+++|++..+ ..+.++.+.++....+.+++. .+.+|||||++.+...+..++..+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 34679999999999999999999999887 344455554555555666664 477999999999999999999999999
Q ss_pred EEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-------C--CcEEEeccC
Q 028292 89 IMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-------G--CLFLECSAK 159 (211)
Q Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~ 159 (211)
|+|+|++++........ + ..+. ..++|+++|+||+|+.+.. .++........ + ++++++||+
T Consensus 83 i~v~d~~~~~~~~~~~~-l-~~~~----~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEA-I-NHAK----AANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp EEEEETTCCCCHHHHHH-H-HHHG----GGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred EEEEECCCCCcHHHHHH-H-HHHH----hCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 99999988543332221 2 1111 3578999999999996532 22333222222 2 489999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCC
Q 028292 160 TRVNVEQCFEELVLKILDTPS 180 (211)
Q Consensus 160 ~~~~v~~~~~~i~~~~~~~~~ 180 (211)
+|.|+++++++|.+.+...+.
T Consensus 154 ~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHhhhhhcc
Confidence 999999999999998876544
No 106
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.96 E-value=1.6e-28 Score=176.72 Aligned_cols=164 Identities=16% Similarity=0.187 Sum_probs=115.6
Q ss_pred CccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------cc
Q 028292 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------QE 72 (211)
Q Consensus 4 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~ 72 (211)
.+.+.+....++|+|+|++|||||||+++|++..+ ..+.++.+.+.......+++ .+.+||||| ++
T Consensus 14 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~ 90 (195)
T 1svi_A 14 KPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSERE 90 (195)
T ss_dssp SGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHH
T ss_pred ChhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHH
Confidence 34455666889999999999999999999999875 56667777666666555544 589999999 66
Q ss_pred cccccccccccCc---cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH--HHHHH-HH
Q 028292 73 RFRTLTSSYYRGA---QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK--KEGID-FA 146 (211)
Q Consensus 73 ~~~~~~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~ 146 (211)
.+...+..++..+ |++++|+|++++.++.... +...+. ..++|+++|+||+|+.+.+.+.. +++.+ +.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~----~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~ 164 (195)
T 1svi_A 91 AWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLK----YYGIPVIVIATKADKIPKGKWDKHAKVVRQTLN 164 (195)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCChHHHHHHHHHHHHHHc
Confidence 6666677777666 9999999999988776642 233333 26789999999999976554332 22222 22
Q ss_pred HHhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 147 REYGCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 147 ~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
...+++++++||++|.|+++++++|.+.+.
T Consensus 165 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 165 IDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 234579999999999999999999998764
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=1.8e-28 Score=172.15 Aligned_cols=152 Identities=18% Similarity=0.236 Sum_probs=111.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc------cccccccc--
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR------TLTSSYYR-- 83 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-- 83 (211)
.++|+++|++|||||||+++|.+..+ ....++.+.+.....+.+++ ..+.+|||||+..+. .+...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998765 33333333344444555554 578999999987764 23344554
Q ss_pred CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN 163 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (211)
++|++++|+|+++.+.. .. |...+.. .++|+++|+||+|+...+.+.. +...++..++++++++||++|.|
T Consensus 81 ~~~~~i~v~D~~~~~~~---~~-~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~ 151 (165)
T 2wji_A 81 KPDLVVNIVDATALERN---LY-LTLQLME----MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMG 151 (165)
T ss_dssp CCSEEEEEEETTCHHHH---HH-HHHHHHH----TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBS
T ss_pred CCCEEEEEecCCchhHh---HH-HHHHHHh----cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCC
Confidence 79999999999986433 23 4444432 4799999999999854433332 35677788899999999999999
Q ss_pred HHHHHHHHHHHH
Q 028292 164 VEQCFEELVLKI 175 (211)
Q Consensus 164 v~~~~~~i~~~~ 175 (211)
++++|++|.+.+
T Consensus 152 v~~l~~~l~~~~ 163 (165)
T 2wji_A 152 IEELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 108
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.96 E-value=5.4e-28 Score=185.54 Aligned_cols=178 Identities=16% Similarity=0.109 Sum_probs=137.4
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCe-EEEEEEEeCCCccccc----------
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGK-KMKLAIWDTAGQERFR---------- 75 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~---------- 75 (211)
.++....-.|+++|.+|||||||+|+|++.++....+..+++........... ..++.||||||.....
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHH
Confidence 34556778999999999999999999999988666666666555444433333 5789999999985543
Q ss_pred ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--CcE
Q 028292 76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG--CLF 153 (211)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~ 153 (211)
..+..++..+|++++|+|++++.++.+... |...+.. .++|+++|+||+|+........+....+...++ .++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~-~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEI-YQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHH-HHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeE
Confidence 455667889999999999999888877554 4555553 578999999999997455555666777777775 789
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHcCCCcccCCCCCc
Q 028292 154 LECSAKTRVNVEQCFEELVLKILDTPSLLSEGSSGV 189 (211)
Q Consensus 154 ~~~Sa~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~ 189 (211)
+++||++|.|+++++++|.+.+.+....++.+....
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td 194 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPEGEPLFPEDMITD 194 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBC
T ss_pred EEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccC
Confidence 999999999999999999999988877776654433
No 109
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=6e-28 Score=178.05 Aligned_cols=165 Identities=18% Similarity=0.066 Sum_probs=114.4
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc---------cccccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF---------RTLTSS 80 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~ 80 (211)
.+.++|+|+|.+|||||||+++|++..+. ...+....+.....+...+ ..+.||||||.... ...+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 46799999999999999999999988763 2222222223333333333 57999999997321 112233
Q ss_pred cccCccEEEEEEECCChhcHHHHH-HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH---HHHHHHHHhC--CcEE
Q 028292 81 YYRGAQGIIMVYDVTRRDTFTNLA-DIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKK---EGIDFAREYG--CLFL 154 (211)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~ 154 (211)
++..+|++|+|||++++.+|.... ..|...+... ..++|+++|+||+|+.+.+.+... ....++...+ ++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 467889999999999998775221 1133333322 248999999999999776666544 4556666666 8999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHcCC
Q 028292 155 ECSAKTRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 155 ~~Sa~~~~~v~~~~~~i~~~~~~~~ 179 (211)
++||++|.|++++|++|.+.+.+.+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654
No 110
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=3.8e-28 Score=186.40 Aligned_cols=161 Identities=25% Similarity=0.388 Sum_probs=126.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC----CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc-----cccccccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF----EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF-----RTLTSSYY 82 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~ 82 (211)
..+||+++|.+|||||||+++++++.. ..+.+|.+..+. .+.+.+ .+.+.+|||||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 358999999999999999999998743 234455554443 344444 678999999999888 67888889
Q ss_pred cCccEEEEEEECCChhcHHHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCC--Ccc----cCHHHHHHHHHHhC---Cc
Q 028292 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKES--ERV----VSKKEGIDFAREYG---CL 152 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~ 152 (211)
+++|++|+|||++++++|+.+.. |...+... ....++|+++|+||+|+.+ .+. +..+++.+++..++ ++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~ 157 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI 157 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred ccCCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence 99999999999999999998876 54444322 1146899999999999976 443 55677888888887 79
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 153 FLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 153 ~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
++++||++ .++.++|..+++.+..
T Consensus 158 ~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 158 GFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEEeeecC-ChHHHHHHHHHHHHcC
Confidence 99999999 8999999998876543
No 111
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=5.4e-28 Score=173.14 Aligned_cols=158 Identities=24% Similarity=0.302 Sum_probs=118.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccccccc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAG-----------QERFRTLTSSY 81 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~ 81 (211)
++|+|+|++|||||||+++|++..+ ..+.+ +.+.....+.+. .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCC--CccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999887 33333 333444444443 589999999 55666677777
Q ss_pred ccC-ccEEEEEEECCChhcHHHHHHHHHHH--------HHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCc
Q 028292 82 YRG-AQGIIMVYDVTRRDTFTNLADIWAKE--------IDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCL 152 (211)
Q Consensus 82 ~~~-~d~~ilv~d~~~~~s~~~~~~~~~~~--------~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 152 (211)
++. ++++++|+++.+..+++.+...|... +.......++|+++|+||+|+.... .++..+++..++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 78777888888888887774445532 2122224689999999999986654 55677788888864
Q ss_pred -------EEEeccCCCCCHHHHHHHHHHHHHcCCC
Q 028292 153 -------FLECSAKTRVNVEQCFEELVLKILDTPS 180 (211)
Q Consensus 153 -------~~~~Sa~~~~~v~~~~~~i~~~~~~~~~ 180 (211)
++++||++|.|++++|++|.+.+.+.+.
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 6999999999999999999999876543
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=1e-27 Score=167.16 Aligned_cols=149 Identities=18% Similarity=0.178 Sum_probs=107.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCC--CcceeeeEEEEEEECCeEEEEEEEeCCCccc-------ccccccccccC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------FRTLTSSYYRG 84 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~ 84 (211)
+||+++|++|+|||||++++.+..+.... +....+.....+...+. .+.+|||||... +...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999998753222 33333445555555554 688999999876 33455667899
Q ss_pred ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCC
Q 028292 85 AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVN 163 (211)
Q Consensus 85 ~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 163 (211)
+|++|+|+|++++.+... .++...+.. .++|+++|+||+|+.+.. +++.++. ..++ +++++||++|.|
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~----~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR----KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH----HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBS
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh----cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCC
Confidence 999999999998755432 223333332 568999999999986542 2233344 5677 899999999999
Q ss_pred HHHHHHHHHHHH
Q 028292 164 VEQCFEELVLKI 175 (211)
Q Consensus 164 v~~~~~~i~~~~ 175 (211)
++++|++|.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998764
No 113
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=5.2e-27 Score=168.58 Aligned_cols=165 Identities=18% Similarity=0.202 Sum_probs=121.6
Q ss_pred CccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC----------ccc
Q 028292 4 STSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG----------QER 73 (211)
Q Consensus 4 ~~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~ 73 (211)
.+.+.+....++|+|+|++|||||||+++|++.....+.++.+.+........+. .+.+||||| +..
T Consensus 14 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~ 90 (195)
T 3pqc_A 14 TPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERML 90 (195)
T ss_dssp STTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHH
T ss_pred ChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHH
Confidence 3445556678999999999999999999999988767777777766655554443 478999999 555
Q ss_pred ccccccccccCc---cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc--ccCHHHHHHHHHH
Q 028292 74 FRTLTSSYYRGA---QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER--VVSKKEGIDFARE 148 (211)
Q Consensus 74 ~~~~~~~~~~~~---d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~ 148 (211)
+...+..++..+ |++++|+|.++..+..... +...+. ..++|+++|+||+|+.+.. ....++...++..
T Consensus 91 ~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~----~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3pqc_A 91 WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMK----SLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK 164 (195)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHH----HcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhh
Confidence 666666666555 9999999998875443321 222333 2379999999999986543 2333455555555
Q ss_pred hC-CcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 149 YG-CLFLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 149 ~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
.+ ++++++||++|.|++++|++|.+.+.+
T Consensus 165 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 165 YGEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred cCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 34 699999999999999999999998754
No 114
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=4.7e-27 Score=168.05 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=118.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc------cccccccc-
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR------TLTSSYYR- 83 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~- 83 (211)
+.++|+++|++|||||||+++|++..+ ....++.+.+.....+.+++ ..+.+|||||+..+. ..+..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 569999999999999999999998765 33334444445555555554 678999999988764 33445553
Q ss_pred -CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC
Q 028292 84 -GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV 162 (211)
Q Consensus 84 -~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (211)
.+|++++|+|.++. +.... |...+. ..++|+++|+||+|+...+.+. .+..+++..++++++++||+++.
T Consensus 84 ~~~~~~i~v~d~~~~---~~~~~-~~~~~~----~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 84 EKPDLVVNIVDATAL---ERNLY-LTLQLM----EMGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM 154 (188)
T ss_dssp HCCSEEEEEEEGGGH---HHHHH-HHHHHH----TTTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred cCCCEEEEEecchhH---HHHHH-HHHHHH----hcCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence 58999999999864 44444 444443 3578999999999985443333 34567788889999999999999
Q ss_pred CHHHHHHHHHHHHHcCC
Q 028292 163 NVEQCFEELVLKILDTP 179 (211)
Q Consensus 163 ~v~~~~~~i~~~~~~~~ 179 (211)
|++++|++|.+.+.+..
T Consensus 155 ~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 155 GIEELKKAISIAVKDKK 171 (188)
T ss_dssp SHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999987765
No 115
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=3.3e-27 Score=176.82 Aligned_cols=157 Identities=18% Similarity=0.176 Sum_probs=117.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc------cccc--
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT------SSYY-- 82 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~-- 82 (211)
.+.++|+|+|++|||||||+++|++..+. ....+|.+.......+......+.+|||||...+...+ ..++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 46799999999999999999999987762 22223444444444443334689999999987765432 4444
Q ss_pred cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC
Q 028292 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV 162 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (211)
..+|++|+|+|+++.++... |...+. ..++|+++|+||+|+...+.+.. +...++..++++++++||++|.
T Consensus 82 ~~~d~ii~V~D~t~~~~~~~----~~~~l~----~~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSLY----LLLEIL----EMEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGE 152 (258)
T ss_dssp SCCSEEEEEEETTSCHHHHH----HHHHHH----TTTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCT
T ss_pred cCCCEEEEEeCCCchhhHHH----HHHHHH----hcCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCc
Confidence 58999999999998765432 333333 35799999999999855444332 3567888899999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 028292 163 NVEQCFEELVLKILD 177 (211)
Q Consensus 163 ~v~~~~~~i~~~~~~ 177 (211)
|+++++++|.+.+..
T Consensus 153 gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 153 GLEELKEKIVEYAQK 167 (258)
T ss_dssp THHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999998763
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=1.9e-27 Score=195.18 Aligned_cols=166 Identities=23% Similarity=0.283 Sum_probs=126.4
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEE------EEE--CCeEEEEEEEeCCCccccccccc
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKH------VAL--GGKKMKLAIWDTAGQERFRTLTS 79 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~~~~~~~i~D~~g~~~~~~~~~ 79 (211)
.....+||+++|.+|||||||++++++..+ ..+.++.+.++.... +.+ ++..+.+.+||+||++.+...+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 356789999999999999999999999887 566677776655432 112 33457899999999999999999
Q ss_pred ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccC
Q 028292 80 SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAK 159 (211)
Q Consensus 80 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 159 (211)
.+++++|++|+|+|+++.+.. .. |...+..+. .++|+++|+||+|+.+.+.+..++...++...+++++++||+
T Consensus 117 ~~l~~~d~ii~V~D~s~~~~~---~~-~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~ 190 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDSNK---HY-WLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCK 190 (535)
T ss_dssp HHHHSSEEEEEEECGGGGGGH---HH-HHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-
T ss_pred HHccCCcEEEEEEeCCCchhH---HH-HHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecC
Confidence 999999999999999876443 33 677776664 479999999999998888888888888888889999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCC
Q 028292 160 TRVNVEQCFEELVLKILDTPS 180 (211)
Q Consensus 160 ~~~~v~~~~~~i~~~~~~~~~ 180 (211)
+|.|+++++.+|.+.+.+...
T Consensus 191 ~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 191 NGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp ----CTTHHHHHHHHHTCTTS
T ss_pred cccCHHHHHHHHHHHHhcccc
Confidence 999999999999999987655
No 117
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=3.7e-28 Score=185.20 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=118.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC----CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc---cccccccCccE
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEE----LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT---LTSSYYRGAQG 87 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~d~ 87 (211)
||+++|+.|||||||++++.+..... ..+|.|.++.. ++ ..+.++||||+|++++.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654432 45666665543 22 347899999999999964 35788999999
Q ss_pred EEEEEECCChhcHHHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCCC-------cccCHHHHHHHHHH----hCCcEEE
Q 028292 88 IIMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKESE-------RVVSKKEGIDFARE----YGCLFLE 155 (211)
Q Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~ 155 (211)
+|+|||++++ +.....+|...+... ...+++|+++++||+|+.+. +.+..+++.+++.. .++.|++
T Consensus 76 ~IlV~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 76 LVYVIDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp EEEECCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred EEEEEECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 9999999998 333333354433321 11468999999999999764 34666667777775 6789999
Q ss_pred eccCCCCCHHHHHHHHHHHHHcC
Q 028292 156 CSAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 156 ~Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
+||++ .+|.+.|..+++.+..+
T Consensus 154 TSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSSTT
T ss_pred eccCC-CcHHHHHHHHHHHHHhh
Confidence 99998 59999999999877654
No 118
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=2.1e-27 Score=167.76 Aligned_cols=153 Identities=21% Similarity=0.189 Sum_probs=110.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCC--CCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEEL--SPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSY 81 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 81 (211)
..++|+++|.+|||||||+++|.+...... .+..+.++....+.+++. .+.+|||||...+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 457999999999999999999998765222 233333455566667664 4789999997653211 1135
Q ss_pred ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR 161 (211)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (211)
++++|++++|+|++++.+++.. . |...+.... ..++|+++|+||+|+.+... .++...+.+++++||++|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~~-~-~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g 150 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDPA-E-IWPEFIARL-PAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTG 150 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSHH-H-HCHHHHHHS-CTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTC
T ss_pred HHhCCEEEEEEECCCCCCHHHH-H-HHHHHHHhc-ccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCC
Confidence 7899999999999999887643 3 555555443 45799999999999843211 011224678999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 028292 162 VNVEQCFEELVLKIL 176 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~ 176 (211)
.|++++|++|.+.+.
T Consensus 151 ~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 151 EGVDVLRNHLKQSMG 165 (172)
T ss_dssp TTHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999988764
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=5.7e-27 Score=176.49 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=116.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc------cccccccc--
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR------TLTSSYYR-- 83 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~-- 83 (211)
+.++|+++|++|||||||+++|++... .....+|.++......+.. ...+.+|||||...+. .....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 468999999999999999999998764 2233346666556666665 6679999999987765 34455554
Q ss_pred CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCC
Q 028292 84 GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVN 163 (211)
Q Consensus 84 ~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 163 (211)
++|++|+|+|+++.+++. . |...+. ..++|+++|+||+|+...+.+. .+...+...++++++++||++|.|
T Consensus 80 ~~d~vi~V~D~t~~e~~~---~-~~~~l~----~~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~g 150 (272)
T 3b1v_A 80 RADSILNVVDATNLERNL---Y-LTTQLI----ETGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTG 150 (272)
T ss_dssp CCSEEEEEEEGGGHHHHH---H-HHHHHH----HTCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred CCCEEEEEecCCchHhHH---H-HHHHHH----hcCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence 699999999999865443 2 333333 2579999999999985443333 345677788899999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 028292 164 VEQCFEELVLKILD 177 (211)
Q Consensus 164 v~~~~~~i~~~~~~ 177 (211)
++++|++|.+.+..
T Consensus 151 i~el~~~i~~~~~~ 164 (272)
T 3b1v_A 151 VDQVVKKAAHTTTS 164 (272)
T ss_dssp HHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999886543
No 120
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.94 E-value=1.3e-26 Score=170.12 Aligned_cols=169 Identities=17% Similarity=0.078 Sum_probs=117.7
Q ss_pred ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEEC-CeEEEEEEEeCCCc----------c
Q 028292 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALG-GKKMKLAIWDTAGQ----------E 72 (211)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~----------~ 72 (211)
+.+.+....++|+|+|.+|+|||||+++|++... .......+++.......+. .....+.||||||. +
T Consensus 21 ~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 100 (223)
T 4dhe_A 21 LRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKA 100 (223)
T ss_dssp GGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHH
T ss_pred hhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHH
Confidence 3445556789999999999999999999999873 4555666665555555554 44467899999994 2
Q ss_pred cccccccccccC---ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHH
Q 028292 73 RFRTLTSSYYRG---AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS--KKEGIDFAR 147 (211)
Q Consensus 73 ~~~~~~~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~ 147 (211)
.+...+..++.. +|++++|+|+++..+... ..+...+. ..++|+++|+||+|+....... .++..+...
T Consensus 101 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~----~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~ 174 (223)
T 4dhe_A 101 HWEQLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFA----PTGKPIHSLLTKCDKLTRQESINALRATQKSLD 174 (223)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHG----GGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHH----hcCCCEEEEEeccccCChhhHHHHHHHHHHHHH
Confidence 334444455544 789999999998644322 22444444 3578999999999986543321 122223333
Q ss_pred H-------hCCcEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292 148 E-------YGCLFLECSAKTRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 148 ~-------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 179 (211)
. .+.+++++||++|.|+++++++|.+.+....
T Consensus 175 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 175 AYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred hhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 3 4568999999999999999999999886543
No 121
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=5.6e-26 Score=173.53 Aligned_cols=166 Identities=20% Similarity=0.202 Sum_probs=118.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--------ccccccccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--------FRTLTSSYY 82 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~ 82 (211)
.+..+|+++|.+|||||||+|+|++.++....+.++++.......+.....++.||||||... +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 456789999999999999999999988754444444433332222223356899999999765 344556678
Q ss_pred cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH-hC-CcEEEeccCC
Q 028292 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE-YG-CLFLECSAKT 160 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~-~~~~~~Sa~~ 160 (211)
+.+|++++|+|++++.+... .++...+.... .++|+++|+||+|+...... ....... .+ .+++++||++
T Consensus 85 ~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~--~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPED--ELVARALKPLV--GKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSALD 156 (301)
T ss_dssp SSCSEEEEEEETTSCCCHHH--HHHHHHHGGGT--TTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTTC
T ss_pred hcCCEEEEEEECCCCCChHH--HHHHHHHHhhc--CCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCCC
Confidence 99999999999998755543 32444444332 47999999999998654330 2222232 23 4789999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCcccC
Q 028292 161 RVNVEQCFEELVLKILDTPSLLSE 184 (211)
Q Consensus 161 ~~~v~~~~~~i~~~~~~~~~~~~~ 184 (211)
|.|+++++++|.+.+.+....+++
T Consensus 157 g~gv~~l~~~l~~~l~~~~~~y~~ 180 (301)
T 1wf3_A 157 ERQVAELKADLLALMPEGPFFYPE 180 (301)
T ss_dssp HHHHHHHHHHHHTTCCBCCCSSCT
T ss_pred CCCHHHHHHHHHHhcccCCCCCCc
Confidence 999999999999988776665544
No 122
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=7.7e-26 Score=169.13 Aligned_cols=150 Identities=20% Similarity=0.223 Sum_probs=111.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc----------cccccc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT----------LTSSYY 82 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~ 82 (211)
.+|+++|.+|||||||+|+|++... ....+..+.+.....+.+.+. .+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999998865 223344444455555555554 789999999876653 445556
Q ss_pred --cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292 83 --RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT 160 (211)
Q Consensus 83 --~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (211)
.++|++|+|+|+++.+++..+. ..+. ..++|+++|+||+|+...+.+.. ....+...++++++++||++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~----~~l~----~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~ 150 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLT----SQLF----ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHK 150 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHH----HHHT----TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGG
T ss_pred hhCCCCEEEEEeeCCCchhHHHHH----HHHH----HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCC
Confidence 8899999999999975554432 2222 45899999999999854333222 23456777899999999999
Q ss_pred CCCHHHHHHHHHHH
Q 028292 161 RVNVEQCFEELVLK 174 (211)
Q Consensus 161 ~~~v~~~~~~i~~~ 174 (211)
|.|+++++++|.+.
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999887
No 123
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=2.3e-25 Score=179.39 Aligned_cols=156 Identities=17% Similarity=0.083 Sum_probs=99.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEE--EEEEECCeEEEEEEEeCCCcccccccc--------ccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKI--KHVALGGKKMKLAIWDTAGQERFRTLT--------SSY 81 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~ 81 (211)
..++|+++|.+|+|||||+|+|++.......+..+++... ..+.+++ +.+.||||||...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 4589999999999999999999988654444444444433 4455555 579999999987655332 346
Q ss_pred ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR 161 (211)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (211)
+.++|++|+|+|++++.+++.+.. +..++... .++|+++|+||+|+.+...... ..+......+++++||++|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~~---~~l~~~~~~~~i~vSAktg 382 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTE-IRELKAAH---PAAKFLTVANKLDRAANADALI---RAIADGTGTEVIGISALNG 382 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC---TTSEEEEEEECTTSCTTTHHHH---HHHHHHHTSCEEECBTTTT
T ss_pred cccCCEEEEEEECCCCcchhhhHH-HHHHHHhc---CCCCEEEEEECcCCCCccchhH---HHHHhcCCCceEEEEECCC
Confidence 789999999999999988754333 33333332 2799999999999976654422 2233332378999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 028292 162 VNVEQCFEELVLKIL 176 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~ 176 (211)
.|+++++++|.+.+.
T Consensus 383 ~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 383 DGIDTLKQHMGDLVK 397 (476)
T ss_dssp BSHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999987
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=3.4e-26 Score=167.40 Aligned_cols=150 Identities=19% Similarity=0.263 Sum_probs=105.6
Q ss_pred ccccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCC----CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccc
Q 028292 5 TSQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE----LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSS 80 (211)
Q Consensus 5 ~~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~ 80 (211)
+......+.++|+|+|++|+|||||+++|.+..+.. +.++.+..+ ....+.+|||||++.+...+..
T Consensus 4 ~~~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~ 74 (218)
T 1nrj_B 4 MGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSD 74 (218)
T ss_dssp ------CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHH
T ss_pred CCCCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHH
Confidence 334445678999999999999999999999987633 333333222 3456899999999999888888
Q ss_pred cccC----ccEEEEEEECC-ChhcHHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCCCcccC------HHHHHHHHH
Q 028292 81 YYRG----AQGIIMVYDVT-RRDTFTNLADIWAKEIDLYS--TNQDCIKLLVGNKVDKESERVVS------KKEGIDFAR 147 (211)
Q Consensus 81 ~~~~----~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~ 147 (211)
++.. +|++|+|+|++ ++.+|.....++...+.... ...++|+++|+||+|+.....+. .+++..++.
T Consensus 75 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~ 154 (218)
T 1nrj_B 75 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIE 154 (218)
T ss_dssp HHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHH
Confidence 8877 89999999999 88899888875544443321 24689999999999997766544 455667777
Q ss_pred HhCCcEEEeccCCCCC
Q 028292 148 EYGCLFLECSAKTRVN 163 (211)
Q Consensus 148 ~~~~~~~~~Sa~~~~~ 163 (211)
..++.++++||+++.+
T Consensus 155 ~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 155 RRKKSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHC--------
T ss_pred HHhccccccccccccc
Confidence 7788999999998875
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=5.1e-25 Score=166.34 Aligned_cols=158 Identities=19% Similarity=0.144 Sum_probs=115.9
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc------cccccc--
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT------LTSSYY-- 82 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~-- 82 (211)
+.++|+++|++|||||||+++|++..+ ....+..+.+.....+...+. .+.+|||||...+.. .+..++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 358999999999999999999998876 223344444444445555554 589999999877665 444454
Q ss_pred cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCC
Q 028292 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRV 162 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 162 (211)
.++|++|+|+|+++.+. ...++..... ...+|+++|+||+|+.+.+.+... ...+...++++++++||++|.
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~----~~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~ 151 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLFLTLELFE----MEVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGE 151 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHH----TTCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTB
T ss_pred cCCcEEEEEecCCcchh---hHHHHHHHHh----cCCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCC
Confidence 68999999999998632 2222332222 223999999999998543333322 566778889999999999999
Q ss_pred CHHHHHHHHHHHHHcCC
Q 028292 163 NVEQCFEELVLKILDTP 179 (211)
Q Consensus 163 ~v~~~~~~i~~~~~~~~ 179 (211)
|++++++++.+.+....
T Consensus 152 gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 152 GVEELKRMIALMAEGKV 168 (271)
T ss_dssp THHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999999987654
No 126
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=3e-26 Score=173.18 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=111.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeee--EEEEEEECCeEEEEEEEeCCCccccccc----------cc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDF--KIKHVALGGKKMKLAIWDTAGQERFRTL----------TS 79 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~ 79 (211)
+.++|+++|.+|||||||+|+|++..+ ......|.+. ....+...+ ..+.+|||||...+... +.
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHH
Confidence 358999999999999999999998875 2223333333 333444443 46889999998776521 22
Q ss_pred ccc--cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEec
Q 028292 80 SYY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECS 157 (211)
Q Consensus 80 ~~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (211)
.++ .++|++|+|+|+++.+.+... ...+.. .++|+++|+||+|+.+.+.+.. ....+...++++++++|
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~S 149 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNLYL----TLQLLE----LGIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLV 149 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHHHH----HHHHHH----HTCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECC
T ss_pred HHHhhcCCCEEEEEecCCChHHHHHH----HHHHHh----cCCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEE
Confidence 222 689999999999986554433 222322 3799999999999854333221 24567778899999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcC
Q 028292 158 AKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 158 a~~~~~v~~~~~~i~~~~~~~ 178 (211)
|++|.|+++++++|.+.+...
T Consensus 150 A~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 150 STRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp CGGGHHHHHHHHHHHTCCCCC
T ss_pred cCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999998876544
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=8.8e-26 Score=181.02 Aligned_cols=162 Identities=18% Similarity=0.134 Sum_probs=115.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCcc----------cccccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQE----------RFRTLT 78 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~ 78 (211)
+..++|+++|.+|||||||+|+|++.......+..+++.. ...+.+++. .+.||||||+. .+....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 4679999999999999999999998876333333444333 334455554 48999999973 233222
Q ss_pred c-ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-H----HhCCc
Q 028292 79 S-SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-R----EYGCL 152 (211)
Q Consensus 79 ~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~~ 152 (211)
. .++..+|++|+|+|++++.++++.. |...+. ..++|+++|+||+|+.+.+....++..+.. . ..+++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAH----EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP 324 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHH----HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHH----HcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCC
Confidence 2 3678899999999999998887753 444443 367999999999999766554443333222 2 23679
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHcCCC
Q 028292 153 FLECSAKTRVNVEQCFEELVLKILDTPS 180 (211)
Q Consensus 153 ~~~~Sa~~~~~v~~~~~~i~~~~~~~~~ 180 (211)
++++||++|.|++++|+.+.+.+.+...
T Consensus 325 ~~~~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 325 ILFMSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEEEecccCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998876443
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=2.3e-25 Score=179.54 Aligned_cols=164 Identities=20% Similarity=0.156 Sum_probs=120.7
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccee--eeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGV--DFKIKHVALGGKKMKLAIWDTAG----------QERFRTL 77 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~ 77 (211)
....++|+++|.+|+|||||+++|++.......+..++ +.....+..++. .+.|||||| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 35679999999999999999999998764222333333 333344555554 689999999 4555544
Q ss_pred cc-ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHh-----CC
Q 028292 78 TS-SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREY-----GC 151 (211)
Q Consensus 78 ~~-~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~ 151 (211)
.. .++..+|++|+|+|+++..+.... .|...+. ..++|+++|+||+|+.+.+....++..+.+... ++
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~~--~~~~~~~----~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAH----EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYA 343 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHH----HTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTS
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHHH--HHHHHHH----HcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCC
Confidence 44 367889999999999986543332 2444444 367999999999999877777777777776665 57
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHHcCCCc
Q 028292 152 LFLECSAKTRVNVEQCFEELVLKILDTPSL 181 (211)
Q Consensus 152 ~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~ 181 (211)
+++++||++|.|++++|.++.+.+.+....
T Consensus 344 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 344 PILFMSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp CEEECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred CEEEEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999988765543
No 129
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.92 E-value=2e-24 Score=165.13 Aligned_cols=168 Identities=20% Similarity=0.126 Sum_probs=116.8
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccccccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE---------RFRTLTSSY 81 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~~~ 81 (211)
.+..+|+++|++|+|||||+|+|++..+....+..+++.......+.....++.+|||||.. .+.......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 35568999999999999999999998764333333333322222222234578999999986 234455677
Q ss_pred ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCC
Q 028292 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKT 160 (211)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (211)
+..+|++++|+|.++ -+ ....++...+. ..+.|+++++||+|+........+.+.++...+++ .++++||++
T Consensus 86 l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~----~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WT--PDDEMVLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp CCCEEEEEEEEETTC-CC--HHHHHHHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HhcCCEEEEEEeCCC-CC--HHHHHHHHHHH----hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 899999999999977 22 22222333332 46799999999999865333233444455555666 699999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCcccCC
Q 028292 161 RVNVEQCFEELVLKILDTPSLLSEG 185 (211)
Q Consensus 161 ~~~v~~~~~~i~~~~~~~~~~~~~~ 185 (211)
+.|++++++++...+.+....++++
T Consensus 159 g~~v~~l~~~i~~~l~~~~~~~~~~ 183 (301)
T 1ega_A 159 GLNVDTIAAIVRKHLPEATHHFPED 183 (301)
T ss_dssp TTTHHHHHHHHHTTCCBCCCSSCTT
T ss_pred CCCHHHHHHHHHHhCCcCCCCCCcc
Confidence 9999999999999887766655443
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=8.7e-26 Score=179.05 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=114.7
Q ss_pred cccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcce--eeeEEEEEEECCeEEEEEEEeCCCccccccc------
Q 028292 6 SQQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIG--VDFKIKHVALGGKKMKLAIWDTAGQERFRTL------ 77 (211)
Q Consensus 6 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------ 77 (211)
.+.+....++|+|+|+.|+|||||+++|++..+.......+ .+.....+.+.+.. .+.+|||||+..+...
T Consensus 27 ~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~ 105 (423)
T 3qq5_A 27 RLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVE 105 (423)
T ss_dssp CC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHH
T ss_pred ccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHH
Confidence 34456678999999999999999999999887633333333 34444555555443 7899999998877654
Q ss_pred -ccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEe
Q 028292 78 -TSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLEC 156 (211)
Q Consensus 78 -~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
...++.++|++|+|+|+...+.. .. |...+.. .++|+++|+||+|+...... +...++...++++++++
T Consensus 106 ~~~~~l~~aD~vllVvD~~~~~~~---~~-~l~~l~~----~~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~v 175 (423)
T 3qq5_A 106 KARRVFYRADCGILVTDSAPTPYE---DD-VVNLFKE----MEIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLV 175 (423)
T ss_dssp HHHHHHTSCSEEEEECSSSCCHHH---HH-HHHHHHH----TTCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCC
T ss_pred HHHHHHhcCCEEEEEEeCCChHHH---HH-HHHHHHh----cCCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEE
Confidence 23467899999999999333222 22 5555543 37999999999999766554 55566666778999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcC
Q 028292 157 SAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 157 Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
||++|.|+++++++|.+.+.+.
T Consensus 176 SAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHSCCC
T ss_pred ECCCCCCHHHHHHHHHHhhhhh
Confidence 9999999999999999998654
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.91 E-value=2.8e-24 Score=166.38 Aligned_cols=160 Identities=21% Similarity=0.223 Sum_probs=115.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----cccccccccc---Ccc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----FRTLTSSYYR---GAQ 86 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~---~~d 86 (211)
+|+|+|.+|||||||+++|++... ....+....+.....+.+.+ ...+.+|||||... +..+...+++ .+|
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 689999999999999999998764 11222222222233344443 24689999999532 3334444444 599
Q ss_pred EEEEEEECCC---hhcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--CcEEEeccCC
Q 028292 87 GIIMVYDVTR---RDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG--CLFLECSAKT 160 (211)
Q Consensus 87 ~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 160 (211)
++|+|+|+++ +.+++.+.. |...+..+.. ..++|+++|+||+|+.... +...++...+. .+++++||++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~-~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLT-INQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHH-HHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred EEEEEEECCcccccChHHHHHH-HHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence 9999999998 778888776 6666666542 3589999999999985432 33455666665 6899999999
Q ss_pred CCCHHHHHHHHHHHHHcCCC
Q 028292 161 RVNVEQCFEELVLKILDTPS 180 (211)
Q Consensus 161 ~~~v~~~~~~i~~~~~~~~~ 180 (211)
+.|+++++.+|.+.+.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 314 REGLRELLFEVANQLENTPE 333 (342)
T ss_dssp SSTTHHHHHHHHHHHTSCCC
T ss_pred CcCHHHHHHHHHHHHhhCcc
Confidence 99999999999999977654
No 132
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.2e-23 Score=164.54 Aligned_cols=161 Identities=21% Similarity=0.187 Sum_probs=116.3
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccc---------ccccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR---------TLTSS 80 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~ 80 (211)
...++|+++|.+|||||||+++|++... ....+..........+... ...+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 4678999999999999999999998765 1111222222333333333 3568999999965432 11223
Q ss_pred cccCccEEEEEEECCChh--cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEecc
Q 028292 81 YYRGAQGIIMVYDVTRRD--TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSA 158 (211)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (211)
....+|++++|+|++++. +++.... |...+.... .++|+++|+||+|+.....+ ++...++...+++++++||
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~-~~~~i~~~~--~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA 317 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIH-LFEEVHGEF--KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISA 317 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHH-HHHHHHHHT--TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHH-HHHHHHHhc--CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeC
Confidence 445689999999998876 6777666 555555443 28999999999999655433 4455666778899999999
Q ss_pred CCCCCHHHHHHHHHHHHHcC
Q 028292 159 KTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 159 ~~~~~v~~~~~~i~~~~~~~ 178 (211)
++|+|+++++++|.+.+...
T Consensus 318 ~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999988654
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=2.1e-24 Score=173.87 Aligned_cols=152 Identities=21% Similarity=0.218 Sum_probs=112.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccee--eeEEEEEEECCeEEEEEEEeCCCcc-cccc--------ccccc
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGV--DFKIKHVALGGKKMKLAIWDTAGQE-RFRT--------LTSSY 81 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~ 81 (211)
.++|+++|.+|||||||+|+|++.......+..++ +.....+.+++ ..+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 48999999999999999999998865333333333 44445556655 468999999987 5432 22356
Q ss_pred ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR 161 (211)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (211)
+..+|++|+|+|++++.+++... ++..+ .++|+++|+||+|+.+. +..+++.++. ..+++++++||++|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~--il~~l------~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg 389 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK--ILERI------KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKG 389 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH--HHHHH------TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGT
T ss_pred hhcccEEEEEecCCCCCCHHHHH--HHHHh------cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCC
Confidence 78999999999999988876532 22222 37899999999999653 3444444432 24478999999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 028292 162 VNVEQCFEELVLKILD 177 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~~ 177 (211)
.|+++++++|.+.+..
T Consensus 390 ~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 390 EGLEKLEESIYRETQE 405 (482)
T ss_dssp CCHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998663
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=3.3e-24 Score=172.04 Aligned_cols=153 Identities=24% Similarity=0.277 Sum_probs=103.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceee--eEEEEEEECCeEEEEEEEeCCCccc---------ccccccccc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVD--FKIKHVALGGKKMKLAIWDTAGQER---------FRTLTSSYY 82 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~ 82 (211)
.+|+++|.+|||||||+|+|++.......+++|.+ .....+.+.+. .+.+|||||... +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999988764445555554 34445555654 578999999653 234456678
Q ss_pred cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHH-HHHHHHhCC-cEEEeccCC
Q 028292 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEG-IDFAREYGC-LFLECSAKT 160 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~ 160 (211)
+++|++|+|+|++++.++.+. .+..++.. .++|+++|+||+|+... . ..+. .++. ..++ .++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~--~i~~~l~~----~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDE--SLADFLRK----STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHH--HHHHHHHH----HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHHH----cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 999999999999887655431 12233332 46899999999997421 1 1222 3333 5676 789999999
Q ss_pred CCCHHHHHHHHHHHHHcC
Q 028292 161 RVNVEQCFEELVLKILDT 178 (211)
Q Consensus 161 ~~~v~~~~~~i~~~~~~~ 178 (211)
|.|++++++++.+.+.+.
T Consensus 150 g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcccc
Confidence 999999999999998754
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=1.8e-24 Score=173.40 Aligned_cols=154 Identities=18% Similarity=0.153 Sum_probs=105.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc--------cccccccccccCc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE--------RFRTLTSSYYRGA 85 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~~ 85 (211)
.+|+++|.+|||||||+|+|++.....+.+++|.+.......+......+.+|||||.. .+...+..++.++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 68999999999999999999998876677888887776666666666679999999975 4556677788999
Q ss_pred cEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCCCCH
Q 028292 86 QGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTRVNV 164 (211)
Q Consensus 86 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v 164 (211)
|++|+|+|++++.++.+. .+...+. ..++|+++|+||+|+...... ..++. ..++ .++++||++|.|+
T Consensus 84 d~il~vvD~~~~~~~~d~--~~~~~l~----~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADE--EVAKILY----RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp SEEEEEEETTTCSCHHHH--HHHHHHT----TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTH
T ss_pred CEEEEEEeCCCCCCHHHH--HHHHHHH----HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCCh
Confidence 999999999988776542 1333333 468999999999998543211 11122 3455 7899999999999
Q ss_pred HHHHHHHHHHHHcC
Q 028292 165 EQCFEELVLKILDT 178 (211)
Q Consensus 165 ~~~~~~i~~~~~~~ 178 (211)
.++++++.+.+.+.
T Consensus 153 ~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 153 GDLLDAVAEHFKNI 166 (436)
T ss_dssp HHHHHHHHHTGGGC
T ss_pred HHHHHHHHHhcCcc
Confidence 99999999988653
No 136
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.90 E-value=2.7e-23 Score=154.17 Aligned_cols=169 Identities=14% Similarity=0.152 Sum_probs=109.1
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCC--cceeeeEEEEEEECCeEEEEEEEeCCCcc-----------
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSP--TIGVDFKIKHVALGGKKMKLAIWDTAGQE----------- 72 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------- 72 (211)
+.+....++|+|+|.+|||||||+++|++..+ ....+ +.+.......+.+.+ ..+.||||||..
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~ 100 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSK 100 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHH
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHH
Confidence 34456789999999999999999999999877 33333 233334444455555 468899999932
Q ss_pred cccccccccccCccEEEEEEECCChhcHHH-HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC------HHHHHHH
Q 028292 73 RFRTLTSSYYRGAQGIIMVYDVTRRDTFTN-LADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS------KKEGIDF 145 (211)
Q Consensus 73 ~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~ 145 (211)
.+...+...++++|++|+|+|+++...... ....+...+.. ....|+++|+||+|+.....+. .+.+..+
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~---~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l 177 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGE---RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDL 177 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHH---HHGGGEEEEEECGGGC------------CHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhh---hccceEEEEEeCCccCCcccHHHHHHhchHHHHHH
Confidence 334445556678899999999976544221 11112222221 2346999999999986554433 2456778
Q ss_pred HHHhCCcEEEeccCCC-----CCHHHHHHHHHHHHHcCCC
Q 028292 146 AREYGCLFLECSAKTR-----VNVEQCFEELVLKILDTPS 180 (211)
Q Consensus 146 ~~~~~~~~~~~Sa~~~-----~~v~~~~~~i~~~~~~~~~ 180 (211)
...++..++.++...+ .++.+++..+.+.+.+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g 217 (239)
T 3lxx_A 178 MDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKE 217 (239)
T ss_dssp HHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 8888888888877644 6899999999888876544
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.90 E-value=7.7e-23 Score=162.44 Aligned_cols=166 Identities=15% Similarity=0.100 Sum_probs=114.7
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEE-------EE---------E---ECCeEEEEEEEeCC
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIK-------HV---------A---LGGKKMKLAIWDTA 69 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~-------~~---------~---~~~~~~~~~i~D~~ 69 (211)
.....++|+++|++++|||||+++|++............+.... .+ . .......+.|||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 44567999999999999999999999854422111111110000 00 0 01223689999999
Q ss_pred CcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC--HHHHHHHHH
Q 028292 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS--KKEGIDFAR 147 (211)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~ 147 (211)
|++.+...+...+..+|++|+|+|+++..++..... +...+... ...|+++|+||+|+.+..... .++..++..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875655555 44444433 236899999999986543211 122222222
Q ss_pred Hh---CCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292 148 EY---GCLFLECSAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 148 ~~---~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
.. +++++++||++|.|+++++++|.+.+...
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 22 56899999999999999999999877543
No 138
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.89 E-value=9.1e-23 Score=167.92 Aligned_cols=160 Identities=25% Similarity=0.305 Sum_probs=112.5
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCC--CC------------CCCCcceeeeEEEEEEE-----CCeEEEEEEEeCCCc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDT--FE------------ELSPTIGVDFKIKHVAL-----GGKKMKLAIWDTAGQ 71 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~------------~~~~~~~~~~~~~~~~~-----~~~~~~~~i~D~~g~ 71 (211)
++..||+++|+.++|||||+++|+... .. ......|.++......+ ++..+.++||||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 356899999999999999999998632 10 01112333333322222 456789999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC
Q 028292 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC 151 (211)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 151 (211)
.+|...+...+..+|++|+|+|+++..+++.... |.... ..++|+++++||+|+.... ..+...++...+++
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~-----~~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~ 153 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAM-----EMDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGI 153 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHH-----HTTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHH-----HCCCCEEEeeeccCccccc--HHHHHHHHHHHhCC
Confidence 9999999999999999999999999877766655 44433 2578999999999996653 22334455556666
Q ss_pred ---cEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292 152 ---LFLECSAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 152 ---~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
.++++||++|.|+++++++|.+.+...
T Consensus 154 ~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 154 DATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp CCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred CcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 499999999999999999999987654
No 139
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.89 E-value=1.9e-22 Score=163.07 Aligned_cols=159 Identities=16% Similarity=0.119 Sum_probs=112.7
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCC----CC----CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccc
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDT----FE----ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT 78 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~ 78 (211)
+....+.++|+++|++++|||||+++|++.. .+ +..+....+.....+.+++ ..+.||||||++.+...+
T Consensus 13 ~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~ 90 (482)
T 1wb1_A 13 PHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAV 90 (482)
T ss_dssp CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHH
T ss_pred hhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHH
Confidence 4445578999999999999999999999876 21 1111111112222233333 679999999999998888
Q ss_pred cccccCccEEEEEEECCCh---hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHh----
Q 028292 79 SSYYRGAQGIIMVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VSKKEGIDFAREY---- 149 (211)
Q Consensus 79 ~~~~~~~d~~ilv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~---- 149 (211)
...+..+|++|+|+|+++. ++++.+. .+. ..++|+++++||+|+.+... ...+++.++....
T Consensus 91 ~~~~~~aD~~ilVvda~~g~~~qt~e~l~-----~~~----~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 161 (482)
T 1wb1_A 91 VSAADIIDLALIVVDAKEGPKTQTGEHML-----ILD----HFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLK 161 (482)
T ss_dssp HHHTTSCCEEEEEEETTTCSCHHHHHHHH-----HHH----HTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGG
T ss_pred HHHHhhCCEEEEEEecCCCccHHHHHHHH-----HHH----HcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccc
Confidence 8889999999999999983 4443322 222 24688899999999965321 1233444555554
Q ss_pred CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 150 GCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 150 ~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
+++++++||++|.|+++++++|.+.+.
T Consensus 162 ~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 162 NSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 578999999999999999999999876
No 140
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.89 E-value=9.5e-24 Score=169.36 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=103.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCC--CcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSSY 81 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~ 81 (211)
..++|+++|++|+|||||+|+|++....... +..+.++....+.+++ ..+.+|||||...+... ....
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4689999999999999999999987653333 3333333334455555 45799999997654432 2335
Q ss_pred ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCC
Q 028292 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTR 161 (211)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (211)
+.++|++++|+|.+++.++... . ++..+ ..+|+++|+||+|+.+...+. ....+. .+.+++++||++|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~~-~-i~~~l------~~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg 368 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGDQ-E-IYEQV------KHRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQK 368 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHHH-H-HHHHH------TTSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTT
T ss_pred hhcCCEEEEEeccCCCCCHHHH-H-HHHhc------cCCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCC
Confidence 7899999999999998776552 2 33333 237999999999996654433 111111 3568999999999
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 028292 162 VNVEQCFEELVLKILDTP 179 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~~~~ 179 (211)
.|+++++++|.+.+....
T Consensus 369 ~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 369 QGIDSLETAILEIVQTGK 386 (462)
T ss_dssp BSHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHhccC
Confidence 999999999999987654
No 141
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.89 E-value=2.2e-22 Score=165.40 Aligned_cols=161 Identities=24% Similarity=0.289 Sum_probs=114.9
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCC--CCC------C------CCcceeeeE----EEEEEE-CCeEEEEEEEeCCC
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT--FEE------L------SPTIGVDFK----IKHVAL-GGKKMKLAIWDTAG 70 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~------~------~~~~~~~~~----~~~~~~-~~~~~~~~i~D~~g 70 (211)
.++..||+++|+.++|||||+++|+... ... . ....|.++. ...+.. ++..+.++||||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 3567899999999999999999998632 110 0 011222221 111221 45668999999999
Q ss_pred cccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC
Q 028292 71 QERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG 150 (211)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 150 (211)
+.+|...+...+..+|++|+|+|+++..+++.... |.... ..++|+++++||+|+..... .+...++...++
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~-----~~~ipiIvviNKiDl~~a~~--~~v~~el~~~lg 154 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAV-----EQDLVIIPVINKIDLPSADV--DRVKKQIEEVLG 154 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHH-----HTTCEEEEEEECTTSTTCCH--HHHHHHHHHTSC
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHH-----HCCCCEEEEEeccCccccCH--HHHHHHHHHhhC
Confidence 99999888888999999999999999888777665 44433 25789999999999965431 223344555556
Q ss_pred C---cEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292 151 C---LFLECSAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 151 ~---~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
+ .++++||++|.|+++++++|.+.+...
T Consensus 155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 155 LDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp CCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred CCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 6 489999999999999999999987653
No 142
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=1.4e-21 Score=155.49 Aligned_cols=159 Identities=18% Similarity=0.168 Sum_probs=105.6
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC----CCCCC--cceeeeEEEEEEE-------------C--C----eEEEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF----EELSP--TIGVDFKIKHVAL-------------G--G----KKMKLAI 65 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~----~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~i 65 (211)
...++|+++|+.++|||||+++|++... .+..+ |....+....+.. . + ....+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 3569999999999999999999985432 22222 3332333333211 1 1 2378999
Q ss_pred EeCCCcccccccccccccCccEEEEEEECCCh----hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCH
Q 028292 66 WDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VSK 139 (211)
Q Consensus 66 ~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~ 139 (211)
|||||++.|...+...+..+|++|+|+|+++. ++++.+. .+.. ....|+++++||+|+.+... ...
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-----~~~~---l~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM-----ALEI---LGIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH-----HHHH---TTCCCEEEEEECTTSSCTTTTTTHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH-----HHHH---cCCCeEEEEEEccCCCCHHHHHHHH
Confidence 99999999888887888899999999999964 3443332 2222 23358999999999966543 234
Q ss_pred HHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 140 KEGIDFARE---YGCLFLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 140 ~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
+++.+++.. .+++++++||++|.|+++++++|.+.+..
T Consensus 158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 555566554 35789999999999999999999987654
No 143
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=4.3e-22 Score=159.50 Aligned_cols=157 Identities=18% Similarity=0.201 Sum_probs=107.4
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCC------------------------------CCCCcceeeeEEEEEEEC
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE------------------------------ELSPTIGVDFKIKHVALG 57 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 57 (211)
.+....++|+++|++++|||||+++|+..... ......|.+.......+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 34457799999999999999999999654210 011123444555454555
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhc---HH---HHHHHHHHHHHhhcCCCCCc-EEEEEeCCC
Q 028292 58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDT---FT---NLADIWAKEIDLYSTNQDCI-KLLVGNKVD 130 (211)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D 130 (211)
.....+.||||||+++|...+...+.++|++|+|+|+++... |+ .... ...... ..++| +++++||+|
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e-~l~~~~----~~~v~~iIvviNK~D 166 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAK----TAGVKHLIVLINKMD 166 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHH-HHHHHH----HcCCCeEEEEeecCC
Confidence 556689999999999999888888999999999999998632 11 1111 111222 24566 899999999
Q ss_pred CCCCc------ccCHHHHHHHHHHhC------CcEEEeccCCCCCHHHHHH
Q 028292 131 KESER------VVSKKEGIDFAREYG------CLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 131 ~~~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~v~~~~~ 169 (211)
+.... ....++...+....+ ++++++||++|.|+.++.+
T Consensus 167 l~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 167 DPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 85321 111233444444444 4799999999999999665
No 144
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=2e-22 Score=161.67 Aligned_cols=161 Identities=22% Similarity=0.195 Sum_probs=110.5
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeee--EEEEEEECCeEEEEEEEeCCCcccccccc----------
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDF--KIKHVALGGKKMKLAIWDTAGQERFRTLT---------- 78 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~---------- 78 (211)
...++|+++|++|||||||+|+|++.......+..|++. ....+.+++. .+.+|||+|........
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 457999999999999999999999887533444444433 3345566665 57899999974332211
Q ss_pred --cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH-H----HhCC
Q 028292 79 --SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA-R----EYGC 151 (211)
Q Consensus 79 --~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~ 151 (211)
..++..+|++++|+|+++..++++.. +...+. ..++|+++|+||+|+.+.+....++..+.. . ..++
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~~--i~~~l~----~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQR--MAGLME----RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYS 329 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHH----HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTS
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCC
Confidence 23456789999999999877665422 333332 367999999999999765544444333222 2 2357
Q ss_pred cEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292 152 LFLECSAKTRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 152 ~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 179 (211)
+++++||++|.|++++|+.+.+.+.+..
T Consensus 330 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 330 PLIFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 8999999999999999999998876643
No 145
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=7.2e-23 Score=153.69 Aligned_cols=165 Identities=14% Similarity=0.151 Sum_probs=106.3
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-C-CCCCc-ceeeeEEEEEEECCeEEEEEEEeCCCcccccccc-------
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-E-ELSPT-IGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLT------- 78 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------- 78 (211)
+....++|+|+|++|||||||+++|++... . ...+. ...+.........+ ..+.||||||...+....
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHH
Confidence 345679999999999999999999998774 2 22222 22233333444444 468999999976543221
Q ss_pred ----cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhh-cCCCCCcEEEEEe-CCCCCCCcccCH-------HHHHHH
Q 028292 79 ----SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGN-KVDKESERVVSK-------KEGIDF 145 (211)
Q Consensus 79 ----~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~ 145 (211)
...++.+|++|+|+|+++..... ..+...+... ......|.++++| |+|+.... +.. .++..+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~---~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQD---QQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHH---HHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHH---HHHHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHH
Confidence 23578899999999998632221 1122233222 1122456666666 99996432 221 234445
Q ss_pred HHHhCCc---E--EEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292 146 AREYGCL---F--LECSAKTRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 146 ~~~~~~~---~--~~~Sa~~~~~v~~~~~~i~~~~~~~~ 179 (211)
....+.. + +++||+++.|++++|.+|.+.+....
T Consensus 172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 5555532 2 78999999999999999999998765
No 146
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.88 E-value=3.4e-22 Score=148.82 Aligned_cols=168 Identities=13% Similarity=0.081 Sum_probs=107.0
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCcceeee--EEEEEEECCeEEEEEEEeCCCc--------ccccccc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDF--KIKHVALGGKKMKLAIWDTAGQ--------ERFRTLT 78 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~--------~~~~~~~ 78 (211)
....++|+|+|.+|||||||+|+|++..... ..+..+++. .......++ ..+.||||||. +.+....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 3468999999999999999999999987622 222323332 333334443 56889999995 2222222
Q ss_pred ccc----ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCCCccc------CHHHHHHHH
Q 028292 79 SSY----YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS--TNQDCIKLLVGNKVDKESERVV------SKKEGIDFA 146 (211)
Q Consensus 79 ~~~----~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~ 146 (211)
..+ .+.+|++|+|+|+++....+. . +...+.... ...+.|+++++||.|+...... ..+....+.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~--~-~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQ--Q-AVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHH--H-HHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHH--H-HHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHH
Confidence 222 389999999999986322211 1 222332221 1236899999999999653211 113456777
Q ss_pred HHhCCcEEEeccCC-----CCCHHHHHHHHHHHHHcCCCcc
Q 028292 147 REYGCLFLECSAKT-----RVNVEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 147 ~~~~~~~~~~Sa~~-----~~~v~~~~~~i~~~~~~~~~~~ 182 (211)
..++..++.++... +.|+++++..|.+.+.+....+
T Consensus 173 ~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~~~ 213 (247)
T 3lxw_A 173 AECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKGAH 213 (247)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCCCC
Confidence 78888777776654 5799999999999998754443
No 147
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.88 E-value=3e-23 Score=168.23 Aligned_cols=152 Identities=15% Similarity=0.080 Sum_probs=101.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC------------------------------CCCCCcceeeeEEEEEEECCeE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF------------------------------EELSPTIGVDFKIKHVALGGKK 60 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~ 60 (211)
...+||+++|++++|||||+++|++... .......|.++......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 3579999999999999999999986511 0111122444444444455556
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHH------HHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTN------LADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
..+.||||||+++|...+..++.++|++|+|+|+++..++.. ... ....... ....|+++|+||+|+.+.
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e-~~~~~~~---~~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASS---LGIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHH-HHHHHHH---TTCCCEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHH-HHHHHHH---cCCCcEEEEEECcCcccc
Confidence 789999999999999999999999999999999998754322 111 2222221 233579999999999664
Q ss_pred cccCHHHHHH----HHHHh-----CCcEEEeccCCCCCHHH
Q 028292 135 RVVSKKEGID----FAREY-----GCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 135 ~~~~~~~~~~----~~~~~-----~~~~~~~Sa~~~~~v~~ 166 (211)
.....++... +.... +++++++||++|.|+++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 4333333333 33333 45899999999999975
No 148
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.88 E-value=5.9e-24 Score=172.65 Aligned_cols=159 Identities=19% Similarity=0.153 Sum_probs=113.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIM 90 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~il 90 (211)
+.++|+++|++++|||||+++|.+..+ ....+..+.++....+... ....++||||||++.|..++..++..+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 567899999999999999999998766 3333333333333333321 22368999999999999999999999999999
Q ss_pred EEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-HHHHHHH---HHHh--CCcEEEeccCCCCCH
Q 028292 91 VYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS-KKEGIDF---AREY--GCLFLECSAKTRVNV 164 (211)
Q Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~---~~~~--~~~~~~~Sa~~~~~v 164 (211)
|+|+++....+.... + ..+. ..++|+++++||+|+.+..... ..+...+ ...+ .++++++||++|.|+
T Consensus 82 VVDa~dg~~~qt~e~-l-~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 82 VVAADDGVMKQTVES-I-QHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp ECBSSSCCCHHHHHH-H-HHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred EEECCCCccHHHHHH-H-HHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 999999766554433 2 2222 4678999999999986533211 1111111 1112 247999999999999
Q ss_pred HHHHHHHHHHHHc
Q 028292 165 EQCFEELVLKILD 177 (211)
Q Consensus 165 ~~~~~~i~~~~~~ 177 (211)
++++++|...+..
T Consensus 156 ~eLle~I~~l~~~ 168 (537)
T 3izy_P 156 MALAEATIALAEM 168 (537)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hhHHHHHHHhhhc
Confidence 9999999988753
No 149
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=1.9e-21 Score=151.92 Aligned_cols=163 Identities=19% Similarity=0.126 Sum_probs=108.6
Q ss_pred EE-EEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc---------ccccccccc
Q 028292 14 FK-LLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER---------FRTLTSSYY 82 (211)
Q Consensus 14 ~~-i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~~ 82 (211)
++ |+++|.+|+|||||+|+|++... ....+....+.....+.+++ ..+.+|||+|... +...+. .+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HH
Confidence 44 99999999999999999998775 11222222234556667776 4578999999521 222222 46
Q ss_pred cCccEEEEEEECCChh--cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHh---CCcEEEe
Q 028292 83 RGAQGIIMVYDVTRRD--TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-SKKEGIDFAREY---GCLFLEC 156 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~ 156 (211)
..+|++++|+|++++. .++.... +...+.... ..++|+++|+||+|+.+.... ....+..+.... +.+++++
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~l~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 333 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQS-SFEILREIG-VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI 333 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHH-HHHHHHHHT-CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred HhCCEEEEEEECCCCcchHHHHHHH-HHHHHHHhC-cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 8899999999999876 4444433 555555443 467899999999998654311 011232333444 2478999
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCCc
Q 028292 157 SAKTRVNVEQCFEELVLKILDTPSL 181 (211)
Q Consensus 157 Sa~~~~~v~~~~~~i~~~~~~~~~~ 181 (211)
||+++.|+++++++|.+.+......
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~~~~~ 358 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQLSLE 358 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHC--
T ss_pred ECCCCcCHHHHHHHHHHHhcccCCC
Confidence 9999999999999999988765443
No 150
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=7.4e-23 Score=164.96 Aligned_cols=156 Identities=18% Similarity=0.147 Sum_probs=106.5
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCC--------cccccccccccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAG--------QERFRTLTSSYY 82 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~~~~ 82 (211)
....+|+|+|.+|||||||+|+|++..+.....++|.+.......+......+.+||||| ++.+...+..++
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 456799999999999999999999988766777888888877777777777899999999 566667778888
Q ss_pred cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCC-cEEEeccCCC
Q 028292 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGC-LFLECSAKTR 161 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 161 (211)
.++|++|+|+|..+..+... .++...+. ..++|+++|+||+|+..... ...++ ...++ .++++||++|
T Consensus 101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~----~~~~pvilV~NK~D~~~~~~----~~~e~-~~lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAAD--EEVAKILY----RTKKPVVLAVNKLDNTEMRA----NIYDF-YSLGFGEPYPISGTHG 169 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHH--HHHHHHHT----TCCSCEEEEEECC-------------CCS-GGGSSSSEEECCTTTC
T ss_pred hhCCEEEEEEeCCCCCChHH--HHHHHHHH----HcCCCEEEEEECccchhhhh----hHHHH-HHcCCCceEEeecccc
Confidence 99999999999987544332 22333333 46899999999999853321 11111 12343 5689999999
Q ss_pred CCHHHHHHHHHHHHHc
Q 028292 162 VNVEQCFEELVLKILD 177 (211)
Q Consensus 162 ~~v~~~~~~i~~~~~~ 177 (211)
.|+.++++++.+.+.+
T Consensus 170 ~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TTHHHHHHHHHTTGGG
T ss_pred cchHHHHHHHHhhccc
Confidence 9999999999887654
No 151
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.87 E-value=1.5e-22 Score=152.95 Aligned_cols=158 Identities=19% Similarity=0.251 Sum_probs=93.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC--CCC-------CCcceeeeEEEEEEECCeEEEEEEEeCCCccc-------cc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF--EEL-------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER-------FR 75 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~ 75 (211)
..++|+|+|.+|+|||||+|+|++... ..+ .++.+.+.....+..++..+.+.||||||... +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 569999999999999999999887665 222 34555555555555556667999999999622 22
Q ss_pred ccc-------cccc-------------cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292 76 TLT-------SSYY-------------RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER 135 (211)
Q Consensus 76 ~~~-------~~~~-------------~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 135 (211)
.+. ..++ ..+|+++++++.+.......-.. ++..+. . ++|+++|+||+|+....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~-~l~~l~----~-~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIE-FMKRLH----E-KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHH-HHHHHT----T-TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHH-HHHHHh----c-cCCEEEEEeccCCCCHH
Confidence 221 1112 23679999998766322111112 333332 2 79999999999985433
Q ss_pred ccC--HHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292 136 VVS--KKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 136 ~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 175 (211)
+.. .+.+.+.....+++++++||++++|+++++.+|.+.+
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 322 1234455567789999999999999999999988764
No 152
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=7.9e-22 Score=157.98 Aligned_cols=156 Identities=22% Similarity=0.162 Sum_probs=105.4
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC---CCC----------CCc-------------------ceeeeEEEEEE
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF---EEL----------SPT-------------------IGVDFKIKHVA 55 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~----------~~~-------------------~~~~~~~~~~~ 55 (211)
......++|+++|++++|||||+++|++... ... ..+ .|.+.......
T Consensus 19 ~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~ 98 (434)
T 1zun_B 19 HERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRY 98 (434)
T ss_dssp TTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEE
T ss_pred cccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeE
Confidence 3445679999999999999999999986541 100 011 12222222222
Q ss_pred ECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc
Q 028292 56 LGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER 135 (211)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 135 (211)
+......+.||||||++.|...+..++..+|++|+|+|+++....+.. . +...+.. ....|+++|+||+|+.+..
T Consensus 99 ~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~-~-~l~~~~~---~~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 99 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-R-HSYIASL---LGIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-H-HHHHHHH---TTCCEEEEEEECTTTTTSC
T ss_pred eecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-H-HHHHHHH---cCCCeEEEEEEcCcCCccc
Confidence 333446799999999999988888889999999999999987543332 2 2233332 1224699999999996532
Q ss_pred cc----CHHHHHHHHHHhC-----CcEEEeccCCCCCHHHHH
Q 028292 136 VV----SKKEGIDFAREYG-----CLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 136 ~~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~ 168 (211)
.. ..++...++..++ ++++++||++|.|+++++
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 11 2344556666677 689999999999998753
No 153
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=2.8e-21 Score=153.82 Aligned_cols=161 Identities=18% Similarity=0.172 Sum_probs=111.9
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC----CCCCC--cceeeeEEEEEEE-------------C--C----eEEEE
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF----EELSP--TIGVDFKIKHVAL-------------G--G----KKMKL 63 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~----~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 63 (211)
.....++|+++|+.++|||||+++|++... .+..+ |....+....+.. . + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 345779999999999999999999996432 12222 3332333332211 0 1 13689
Q ss_pred EEEeCCCcccccccccccccCccEEEEEEECCCh----hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--c
Q 028292 64 AIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRR----DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--V 137 (211)
Q Consensus 64 ~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~ 137 (211)
.||||||++.|.......+..+|++|+|+|+++. ++++.+. .+... ...|+++++||+|+.+... .
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-----~~~~~---~~~~iivviNK~Dl~~~~~~~~ 157 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-----ALQII---GQKNIIIAQNKIELVDKEKALE 157 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-----HHHHH---TCCCEEEEEECGGGSCHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-----HHHHc---CCCcEEEEEECccCCCHHHHHH
Confidence 9999999999888777778899999999999964 3443332 12221 2368999999999865432 1
Q ss_pred CHHHHHHHHHH---hCCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 138 SKKEGIDFARE---YGCLFLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 138 ~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
..+++.++... .+++++++||++|.|+++++++|.+.+..
T Consensus 158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 23344445443 35799999999999999999999987654
No 154
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=1.9e-22 Score=156.68 Aligned_cols=119 Identities=16% Similarity=0.188 Sum_probs=96.4
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCC
Q 028292 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKV 129 (211)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 129 (211)
.+.+.+||++|++.++..|..++++++++|+|||+++ ..+++....++..... .....++|++|++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~-~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN-NKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT-CGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc-CccccCCcEEEEEECc
Confidence 4679999999999999999999999999999999999 4568887774444433 2224679999999999
Q ss_pred CCCCCc---------------ccCHHHHHHHHH-----------HhCCcEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292 130 DKESER---------------VVSKKEGIDFAR-----------EYGCLFLECSAKTRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 130 D~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 179 (211)
|+...+ .+..+++..++. ..++.++++||+++.||+++|.++.+.+.+..
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 984322 356778888876 34678999999999999999999999987543
No 155
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.87 E-value=9.5e-23 Score=159.42 Aligned_cols=165 Identities=21% Similarity=0.309 Sum_probs=92.6
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCC-C-CC--------CCcceeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTF-E-EL--------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQ-------ER 73 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~-~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~ 73 (211)
...++|+|+|++|+|||||+++|++... . .+ .++.+.......+...+..+.+++|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 3568999999999999999999876543 1 11 133333333333444566778999999997 55
Q ss_pred cccccc-------ccccCccE-----------EEEEEECCC-hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 74 FRTLTS-------SYYRGAQG-----------IIMVYDVTR-RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 74 ~~~~~~-------~~~~~~d~-----------~ilv~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
+..++. .++.++++ .+++|++++ ..++..+...++..+ ..++|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCH
Confidence 555554 44433322 234444443 334444433243333 367999999999999765
Q ss_pred cccCH--HHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHcCCCc
Q 028292 135 RVVSK--KEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPSL 181 (211)
Q Consensus 135 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~~ 181 (211)
+.+.. +++..++..++++++++||+++.+ ++.|.++.+.+.+..+.
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~ 237 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPF 237 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCC
Confidence 55443 466667777889999999999999 88899999988765543
No 156
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.86 E-value=9.9e-22 Score=155.73 Aligned_cols=159 Identities=17% Similarity=0.136 Sum_probs=112.5
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCC-------CCC--------CCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDT-------FEE--------LSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRT 76 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~-------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~ 76 (211)
..+||+++|++++|||||+++|++.. +.. .....|.+.......+......+.||||||+++|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 45899999999999999999998741 100 011233444444444544556799999999999888
Q ss_pred cccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCcc---cCHHHHHHHHHHhC--
Q 028292 77 LTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERV---VSKKEGIDFAREYG-- 150 (211)
Q Consensus 77 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~-- 150 (211)
.+...+..+|++|+|+|+++....+.... + ..+. ..++| +++++||+|+..... ...+++.+++..++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l-~~~~----~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREH-L-LLAR----QIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHH-H-HHHH----HTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHH-H-HHHH----HcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 88888999999999999998654443332 3 3333 24678 689999999864221 12235556666665
Q ss_pred ---CcEEEeccCCCCC----------HHHHHHHHHHHHH
Q 028292 151 ---CLFLECSAKTRVN----------VEQCFEELVLKIL 176 (211)
Q Consensus 151 ---~~~~~~Sa~~~~~----------v~~~~~~i~~~~~ 176 (211)
++++++||++|.| +.++++.|.+.+.
T Consensus 156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 5899999999764 7888888877664
No 157
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.2e-22 Score=166.59 Aligned_cols=153 Identities=15% Similarity=0.092 Sum_probs=102.8
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCC------------------------------cceeeeEEEEEEECCeE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSP------------------------------TIGVDFKIKHVALGGKK 60 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~ 60 (211)
...++|+++|++++|||||+++|++........ ..|.++......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457899999999999999999999764311110 12333333333344445
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChh---cH---HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TF---TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
..+.||||||++.+...+...+..+|++|+|+|+++.. .| ..... ....... ....|+++|+||+|+.+.
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e-~l~~~~~---lgi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLASS---LGIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHH-HHHHHHT---TTCCEEEEEEECTTTTTT
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHH-HHHHHHH---cCCCeEEEEEecccccch
Confidence 67999999999999999999999999999999998742 11 01111 1111221 223459999999999664
Q ss_pred cccCHH----HHHHHHHHh-----CCcEEEeccCCCCCHHHH
Q 028292 135 RVVSKK----EGIDFAREY-----GCLFLECSAKTRVNVEQC 167 (211)
Q Consensus 135 ~~~~~~----~~~~~~~~~-----~~~~~~~Sa~~~~~v~~~ 167 (211)
.....+ ++..+.... +++++++||++|.|+.++
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 332222 333344444 358999999999999876
No 158
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.86 E-value=5.7e-22 Score=161.50 Aligned_cols=120 Identities=17% Similarity=0.159 Sum_probs=85.7
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-------------------C--CCCCcceeeeEEEEEEECCeEEEEEEEe
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-------------------E--ELSPTIGVDFKIKHVALGGKKMKLAIWD 67 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D 67 (211)
+..+..+|+|+|++|+|||||+++|+.... + ......|.+.......+....+.++|||
T Consensus 9 ~~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liD 88 (528)
T 3tr5_A 9 QTAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLD 88 (528)
T ss_dssp HHHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEEC
T ss_pred hhhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEE
Confidence 345678999999999999999999972111 0 0000122222222233333456799999
Q ss_pred CCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
|||+..+...+..+++.+|++|+|+|+++..+...... |. .+. ..++|+++++||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~-~~-~~~----~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKL-ME-VCR----LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHH-HH-HHH----TTTCCEEEEEECTTSCCS
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HH-HHH----HcCCCEEEEEeCCCCccc
Confidence 99999999999999999999999999999877666543 33 232 457999999999998543
No 159
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.86 E-value=2.6e-22 Score=160.73 Aligned_cols=157 Identities=22% Similarity=0.233 Sum_probs=104.5
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhC--CCCCC----------------------------CCcceeeeEEEEEEECCeE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSD--TFEEL----------------------------SPTIGVDFKIKHVALGGKK 60 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 60 (211)
...++|+++|++++|||||+++|+.. .+... ....|.+.......++...
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45699999999999999999999864 22110 0012333333333444455
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHH---HHHHHHHhhcCCCC-CcEEEEEeCCCCCCCc-
Q 028292 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLAD---IWAKEIDLYSTNQD-CIKLLVGNKVDKESER- 135 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~---~~~~~~~~~~~~~~-~p~ivv~nK~D~~~~~- 135 (211)
..+.||||||+.+|...+..++..+|++|+|+|+++ .+|+.... .....+.... ..+ .|+++++||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~-~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAK-TMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHH-HTTCTTCEEEEECGGGSSSTT
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHH-HcCCCeEEEEEEcccCCCccc
Confidence 679999999999999888889999999999999998 66764432 0111111111 234 4689999999996521
Q ss_pred -----ccCHHHHHHHHHHhC-----CcEEEeccCCCCCHHHHHH
Q 028292 136 -----VVSKKEGIDFAREYG-----CLFLECSAKTRVNVEQCFE 169 (211)
Q Consensus 136 -----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~~~ 169 (211)
....+++.+++...+ ++++++||++|.|+.+++.
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 122345666666665 6799999999999986544
No 160
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.86 E-value=3.4e-21 Score=158.76 Aligned_cols=157 Identities=21% Similarity=0.142 Sum_probs=107.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCC-----CcceeeeEEEEE------------EECCeEEEEEEEeCCCcccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-----PTIGVDFKIKHV------------ALGGKKMKLAIWDTAGQERF 74 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~~ 74 (211)
+.++|+++|++++|||||+++|++..+.... ++.+..+..... .++.....++||||||+..|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 5679999999999999999999976542222 222221111000 00011125899999999999
Q ss_pred cccccccccCccEEEEEEECCC---hhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-------------
Q 028292 75 RTLTSSYYRGAQGIIMVYDVTR---RDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS------------- 138 (211)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------------- 138 (211)
..++...+..+|++|+|+|+++ +++++.+.. +. ..++|+++++||+|+.+.....
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~-----l~----~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI-----LR----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH-----HH----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH-----HH----HcCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 9999999999999999999999 555554321 22 3578999999999985422100
Q ss_pred H----------HHHHHHHHHhC---------------CcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 139 K----------KEGIDFAREYG---------------CLFLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 139 ~----------~~~~~~~~~~~---------------~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
. .+........+ ++++++||++|.|+++++++|...+..
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0 01111122222 379999999999999999999988754
No 161
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=6.3e-22 Score=151.66 Aligned_cols=127 Identities=16% Similarity=0.138 Sum_probs=98.8
Q ss_pred EEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------ChhcHHHHHHHHHHHHHhhcCCCCC
Q 028292 51 IKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLADIWAKEIDLYSTNQDC 120 (211)
Q Consensus 51 ~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~ 120 (211)
...+.+. .+.+.+||++|++.++..|..++++++++|+|||++ +..+++....+|..... .....++
T Consensus 159 ~~~~~~~--~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~-~~~~~~~ 235 (327)
T 3ohm_A 159 EYPFDLQ--SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT-YPWFQNS 235 (327)
T ss_dssp EEEEEET--TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT-SGGGTTC
T ss_pred EEEEEee--ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh-hhccCCc
Confidence 3344444 478999999999999999999999999999999654 66778777774444443 2224689
Q ss_pred cEEEEEeCCCCCCCc----------------ccCHHHHHHHHH----------HhCCcEEEeccCCCCCHHHHHHHHHHH
Q 028292 121 IKLLVGNKVDKESER----------------VVSKKEGIDFAR----------EYGCLFLECSAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 121 p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~ 174 (211)
|+++++||+|+...+ ..+.+++.++.. ..++.++++||+++.||+.+|..+.+.
T Consensus 236 ~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~ 315 (327)
T 3ohm_A 236 SVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 315 (327)
T ss_dssp EEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred eEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHH
Confidence 999999999984432 467778877743 345678999999999999999999999
Q ss_pred HHcCCC
Q 028292 175 ILDTPS 180 (211)
Q Consensus 175 ~~~~~~ 180 (211)
+.+...
T Consensus 316 Il~~~l 321 (327)
T 3ohm_A 316 ILQLNL 321 (327)
T ss_dssp HHHTTC
T ss_pred HHHHhH
Confidence 987643
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.86 E-value=7.5e-22 Score=156.88 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=113.1
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhC--------CCCCC--------CCcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSD--------TFEEL--------SPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (211)
....++|+++|++++|||||+++|++. .+..+ ....|.++......+......+.||||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 346799999999999999999999873 11111 01334444444555555556799999999999
Q ss_pred ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHh
Q 028292 74 FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---SKKEGIDFAREY 149 (211)
Q Consensus 74 ~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~ 149 (211)
|.......+..+|++|+|+|+++....+. .. +...+.. .++| +++++||+|+...... ..++..+++..+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~-~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQT-RE-HILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY 161 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHH-HH-HHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHH-HH-HHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence 98888888999999999999998765433 33 3333332 4678 8899999998642211 123455666665
Q ss_pred C-----CcEEEeccCCCCC------------------HHHHHHHHHHHHH
Q 028292 150 G-----CLFLECSAKTRVN------------------VEQCFEELVLKIL 176 (211)
Q Consensus 150 ~-----~~~~~~Sa~~~~~------------------v~~~~~~i~~~~~ 176 (211)
+ ++++++||++|.| +.++++.|.+.+.
T Consensus 162 ~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp TSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 5 6899999999987 6666666666554
No 163
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.86 E-value=9.5e-22 Score=140.99 Aligned_cols=122 Identities=20% Similarity=0.244 Sum_probs=87.7
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccC----c
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRG----A 85 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----~ 85 (211)
..+.++|+|+|++|||||||+++|.+..+.....+...+. ..+...+.+.+|||||+..+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-----eeeecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 4577999999999999999999999987632111111000 111134578999999999888777777765 8
Q ss_pred cEEEEEEECC-ChhcHHHHHHHHHHHHHhhc--CCCCCcEEEEEeCCCCCCCcc
Q 028292 86 QGIIMVYDVT-RRDTFTNLADIWAKEIDLYS--TNQDCIKLLVGNKVDKESERV 136 (211)
Q Consensus 86 d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~ 136 (211)
|++|+|+|++ ++.++..+..++...+.... ...++|+++|+||+|+.....
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 9999999999 88899888775555444321 246899999999999976554
No 164
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.86 E-value=9.3e-22 Score=154.07 Aligned_cols=146 Identities=6% Similarity=-0.004 Sum_probs=104.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEEC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDV 94 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~ 94 (211)
+|+++|++++|||||+++|+ ..+.+.......+......+.||||||+++|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 99999999999999999998 12222222223344445579999999999998777778899999999999
Q ss_pred CChhcHHHHHHHHHHHHHhhcCCCCCcE-EEEEe-CCCCCCCcccCH--HHHHHHHHHhC---CcEEE--eccCC---CC
Q 028292 95 TRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGN-KVDKESERVVSK--KEGIDFAREYG---CLFLE--CSAKT---RV 162 (211)
Q Consensus 95 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~~---~~~~~--~Sa~~---~~ 162 (211)
+.. .+..... +...+. ..++|. ++++| |+|+ +...+.. +++.++....+ +++++ +||++ +.
T Consensus 93 ~~g-~~~qt~e-~~~~~~----~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 93 PQG-LDAHTGE-CIIALD----LLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp TTC-CCHHHHH-HHHHHH----HTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred CCC-CcHHHHH-HHHHHH----HcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 543 3333333 333333 245777 88899 9998 4332221 34444544433 68999 99999 99
Q ss_pred CHHHHHHHHHHHHHc
Q 028292 163 NVEQCFEELVLKILD 177 (211)
Q Consensus 163 ~v~~~~~~i~~~~~~ 177 (211)
|++++++.|.+.+..
T Consensus 166 gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 166 GVDELKARINEVAEK 180 (370)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhccc
Confidence 999999999988754
No 165
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.85 E-value=4.4e-21 Score=148.96 Aligned_cols=119 Identities=13% Similarity=0.195 Sum_probs=90.9
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------ChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (211)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (211)
..+.+.+|||+|++.++..|..++++++++|+|||++ +..+|+....+|..... .....++|+++++||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~-~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLK-QPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHT-CGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHh-ccccCCCeEEEEEEC
Confidence 5789999999999999999999999999999999998 77889888884444443 222467999999999
Q ss_pred CCCCCCcc--c-------------------CHHHHHHHHHH----------------hCCcEEEeccCCCCCHHHHHHHH
Q 028292 129 VDKESERV--V-------------------SKKEGIDFARE----------------YGCLFLECSAKTRVNVEQCFEEL 171 (211)
Q Consensus 129 ~D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~v~~~~~~i 171 (211)
+|+...+. + ..+++..++.. ..+.++++||+++.||+++|.++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 99843211 1 24566666443 12346899999999999999999
Q ss_pred HHHHHcC
Q 028292 172 VLKILDT 178 (211)
Q Consensus 172 ~~~~~~~ 178 (211)
.+.+.+.
T Consensus 340 ~~~I~~~ 346 (354)
T 2xtz_A 340 DETLRRR 346 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988643
No 166
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=6.1e-22 Score=159.76 Aligned_cols=157 Identities=19% Similarity=0.156 Sum_probs=90.2
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCC--CCC----------------------C------CCcceeeeEEEEEEECCe
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT--FEE----------------------L------SPTIGVDFKIKHVALGGK 59 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~----------------------~------~~~~~~~~~~~~~~~~~~ 59 (211)
....++|+++|+.++|||||+++|+... +.. . ....|.+.......+...
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 3567899999999999999999997521 110 0 001122222221122223
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChh---cHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCc
Q 028292 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESER 135 (211)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~ 135 (211)
...+.||||||++.|...+...+..+|++|+|+|+++.. +|+.... +...+.... ..++| +++++||+|+....
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~q-t~e~l~~~~-~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ-TREHAVLAR-TQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCC-HHHHHHHHH-HTTCSSEEEEEECTTSTTCS
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCc-HHHHHHHHH-HcCCCEEEEEEECccCCCcc
Confidence 467899999999999988888899999999999999862 2221111 111111111 35677 99999999985421
Q ss_pred ------ccCHHHHHHHHHHh-------CCcEEEeccCCCCCHHHHH
Q 028292 136 ------VVSKKEGIDFAREY-------GCLFLECSAKTRVNVEQCF 168 (211)
Q Consensus 136 ------~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~v~~~~ 168 (211)
.....+...++... +++++++||++|.|+.+++
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11223455666655 3569999999999998765
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.84 E-value=1e-22 Score=164.20 Aligned_cols=153 Identities=18% Similarity=0.246 Sum_probs=104.6
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGII 89 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~i 89 (211)
.+..+|+++|++++|||||+++|.+..+. ...+....+.....+..+ ...++||||||++.|..++...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 36689999999999999999999876542 111111111111122222 346899999999999999999999999999
Q ss_pred EEEECCCh---hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCc--ccCHHH--HHHHHHHhC--CcEEEeccCC
Q 028292 90 MVYDVTRR---DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESER--VVSKKE--GIDFAREYG--CLFLECSAKT 160 (211)
Q Consensus 90 lv~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~--~~~~~~~~~--~~~~~~Sa~~ 160 (211)
+|+|+++. ++.+.+. ... ..++|+++++||+|+.... .+..+. ...+...++ ++++++||++
T Consensus 80 LVVda~~g~~~qT~e~l~-----~~~----~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAkt 150 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAIQ-----HAK----AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKA 150 (501)
T ss_dssp EEEETTTBSCTTTHHHHH-----HHH----HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTT
T ss_pred EEeecccCccHHHHHHHH-----HHH----hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeee
Confidence 99999884 4443321 121 3578999999999996421 111100 000112222 6899999999
Q ss_pred CCCHHHHHHHHHHH
Q 028292 161 RVNVEQCFEELVLK 174 (211)
Q Consensus 161 ~~~v~~~~~~i~~~ 174 (211)
|.|+++++++|...
T Consensus 151 G~gI~eLle~I~~~ 164 (501)
T 1zo1_I 151 GTGIDELLDAILLQ 164 (501)
T ss_dssp CTTCTTHHHHTTTT
T ss_pred ccCcchhhhhhhhh
Confidence 99999999998753
No 168
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.83 E-value=1.8e-20 Score=136.07 Aligned_cols=161 Identities=16% Similarity=0.132 Sum_probs=103.9
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc----------ccc
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER----------FRT 76 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~ 76 (211)
.+.....+|+++|++|||||||++++++..+ ..+.++.|.+.....+.+++ .+.+||+||... +..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHH
Confidence 3455678999999999999999999998774 55567777665544444433 478999999642 222
Q ss_pred cccccc---cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc--cCHHHHHHHHHHhC-
Q 028292 77 LTSSYY---RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV--VSKKEGIDFAREYG- 150 (211)
Q Consensus 77 ~~~~~~---~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~- 150 (211)
....++ ..++++++++|++++.++.... +...+. ..+.|+++++||+|+..... .....+..++...+
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~----~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~ 171 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAV----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG 171 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHHH--HHHHHH----HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence 222333 5689999999999876653211 222222 35789999999999854321 11344555555554
Q ss_pred -CcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 151 -CLFLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 151 -~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
+.++++||+++.|+++++++|.+.+.+
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999887654
No 169
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.83 E-value=2.6e-22 Score=165.76 Aligned_cols=149 Identities=22% Similarity=0.180 Sum_probs=83.2
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhhCCCC------------------------------CCCCcceeeeEEEEEEEC
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE------------------------------ELSPTIGVDFKIKHVALG 57 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 57 (211)
......++|+++|++++|||||+++|+..... ......|.+.......+.
T Consensus 172 ~~~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~ 251 (592)
T 3mca_A 172 SNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE 251 (592)
T ss_dssp SCCCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred ccCCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEE
Confidence 34557789999999999999999999742110 000123444444444455
Q ss_pred CeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh----------cHHHHHHHHHHHHHhhcCCCCCc-EEEEE
Q 028292 58 GKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD----------TFTNLADIWAKEIDLYSTNQDCI-KLLVG 126 (211)
Q Consensus 58 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~p-~ivv~ 126 (211)
.....+.||||||+..|...+...+..+|++|+|+|+++.. +.+. ...+. ..++| +|+|+
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~-----l~~~~----~lgip~iIvvi 322 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREH-----AYLLR----ALGISEIVVSV 322 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHH-----HHHHH----HSSCCCEEEEE
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHH-----HHHHH----HcCCCeEEEEE
Confidence 55678999999999999998888999999999999998632 2222 12222 23555 89999
Q ss_pred eCCCCCCCcccC----HHHHHHHH-HHhCC-----cEEEeccCCCCCHH
Q 028292 127 NKVDKESERVVS----KKEGIDFA-REYGC-----LFLECSAKTRVNVE 165 (211)
Q Consensus 127 nK~D~~~~~~~~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~~v~ 165 (211)
||+|+....... ..++..+. ...++ +++++||++|.|+.
T Consensus 323 NKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 323 NKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp ECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred eccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 999986522211 22333333 33344 79999999999998
No 170
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.83 E-value=1e-20 Score=163.08 Aligned_cols=161 Identities=16% Similarity=0.075 Sum_probs=109.9
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCC-------CC--------CCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDT-------FE--------ELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF 74 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 74 (211)
....++|+++|++++|||||+++|++.. +. ....+.|.++....+.++.....+.||||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3467999999999999999999998741 10 11123444444333444455568999999999999
Q ss_pred cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCCCccc---CHHHHHHHHHHhC
Q 028292 75 RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVDKESERVV---SKKEGIDFAREYG 150 (211)
Q Consensus 75 ~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 150 (211)
.......+..+|++|+|+|+++....+.. . +...+.. .++| +++++||+|+.+.... ..+++.++....+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QTr-E-hL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQTR-E-HILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTHH-H-HHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHHH-H-HHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 88888889999999999999986443332 2 2233332 3677 7899999999653221 2245556666665
Q ss_pred -----CcEEEeccCCC--------CCHHHHHHHHHHHHH
Q 028292 151 -----CLFLECSAKTR--------VNVEQCFEELVLKIL 176 (211)
Q Consensus 151 -----~~~~~~Sa~~~--------~~v~~~~~~i~~~~~ 176 (211)
++++++||++| .|+.++++.|.+.+.
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 68999999999 457788877776554
No 171
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.83 E-value=3.9e-21 Score=146.98 Aligned_cols=161 Identities=18% Similarity=0.142 Sum_probs=102.1
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCCcce----------------------eeeE-----------
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-----ELSPTIG----------------------VDFK----------- 50 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-----~~~~~~~----------------------~~~~----------- 50 (211)
+....++|+|+|.+|||||||+|+|++..+. .....++ +++.
T Consensus 22 ~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~ 101 (299)
T 2aka_B 22 ADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETD 101 (299)
T ss_dssp TTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999998763 1111121 1100
Q ss_pred ------------EEEEEEC-CeEEEEEEEeCCCcc-------------cccccccccccCccEEE-EEEECCChhcHHHH
Q 028292 51 ------------IKHVALG-GKKMKLAIWDTAGQE-------------RFRTLTSSYYRGAQGII-MVYDVTRRDTFTNL 103 (211)
Q Consensus 51 ------------~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d~~i-lv~d~~~~~s~~~~ 103 (211)
...+.+. .....+.||||||.. .+..+...++..++.+| +|+|+++..+....
T Consensus 102 ~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~ 181 (299)
T 2aka_B 102 RVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 181 (299)
T ss_dssp HHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH
T ss_pred HhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH
Confidence 0000000 012579999999953 23445566777887666 69999876544332
Q ss_pred HHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHH--hC-CcEEEeccCCCCCHHHHHHHHHHH
Q 028292 104 ADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFARE--YG-CLFLECSAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 104 ~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~v~~~~~~i~~~ 174 (211)
.. +...+. ..+.|+++|+||+|+.+......+.+...... .+ .+++++||++|.|+++++++|.+.
T Consensus 182 ~~-~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 182 LK-IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HH-HHHHHC----TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HH-HHHHhC----CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 22 333332 46799999999999966543222222110001 12 367899999999999999998874
No 172
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=4.6e-20 Score=138.51 Aligned_cols=126 Identities=19% Similarity=0.209 Sum_probs=84.3
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeee--EEEEEEECCeEEEEEEEeCCCccccccccccccc-----
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDF--KIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYR----- 83 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~----- 83 (211)
.+.++|+++|.+|+|||||+++|++.......+..+++. ....+..++ ..+.||||||+..+......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 367999999999999999999999987633344343333 333344444 47999999998777654433332
Q ss_pred ----CccEEEEEEECCChhcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccCH
Q 028292 84 ----GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVSK 139 (211)
Q Consensus 84 ----~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~ 139 (211)
++|++++|++++... +......|...+.... .....|+++|+||+|+.+.+....
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~ 171 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSY 171 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCH
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccH
Confidence 789999999987654 3333222555554432 122359999999999965444433
No 173
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.82 E-value=9.3e-21 Score=152.51 Aligned_cols=152 Identities=16% Similarity=0.147 Sum_probs=102.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCC--CCCC----------------------------CCcceeeeEEEEEEECCeE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDT--FEEL----------------------------SPTIGVDFKIKHVALGGKK 60 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 60 (211)
...++|+++|++++|||||+++|++.. +... ....|.+.......++...
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 356999999999999999999998641 1100 0012222222222333445
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChh---cHH---HHHHHHHHHHHhhcCCCCCc-EEEEEeCCCCCC
Q 028292 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD---TFT---NLADIWAKEIDLYSTNQDCI-KLLVGNKVDKES 133 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~ 133 (211)
..+.||||||++.|...+...+..+|++|+|+|+++.. +|+ .... +..... ..++| +++++||+|+.+
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~----~~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAF----TLGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHH----HTTCCEEEEEEECGGGGT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHH----HcCCCeEEEEEEcccccc
Confidence 67999999999999988888999999999999998763 221 1222 122222 23555 899999999863
Q ss_pred Ccc----cCHHHHHHHHHHhC-----CcEEEeccCCCCCHHHH
Q 028292 134 ERV----VSKKEGIDFAREYG-----CLFLECSAKTRVNVEQC 167 (211)
Q Consensus 134 ~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~v~~~ 167 (211)
... ...+++..++...+ ++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 211 12234555556555 68999999999999754
No 174
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.82 E-value=1.2e-20 Score=145.04 Aligned_cols=118 Identities=18% Similarity=0.231 Sum_probs=94.0
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECC----------ChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVT----------RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (211)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (211)
..+.+.+||++|++.++..|..++++++++|+|||++ +..++++...+|...+.... ..++|+++++||
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~-~~~~piiLv~NK 237 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF-LKGAVKLIFLNK 237 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG-GTTSEEEEEEEC
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc-cCCCeEEEEEEC
Confidence 3477999999999999999999999999999999998 67888888875555554322 478999999999
Q ss_pred CCCCCCc---------------ccCHHHHHHHHHH-h--------------------------CCcEEEeccCCCCCHHH
Q 028292 129 VDKESER---------------VVSKKEGIDFARE-Y--------------------------GCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 129 ~D~~~~~---------------~~~~~~~~~~~~~-~--------------------------~~~~~~~Sa~~~~~v~~ 166 (211)
+|+...+ ....+++.+++.. + .+.++++||++..+|+.
T Consensus 238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~ 317 (340)
T 4fid_A 238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR 317 (340)
T ss_dssp HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence 9983211 1245566555432 2 36789999999999999
Q ss_pred HHHHHHHHHHc
Q 028292 167 CFEELVLKILD 177 (211)
Q Consensus 167 ~~~~i~~~~~~ 177 (211)
+|..+.+.+.+
T Consensus 318 vF~~v~~~Il~ 328 (340)
T 4fid_A 318 VFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999886
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.81 E-value=1.6e-19 Score=147.34 Aligned_cols=118 Identities=16% Similarity=0.147 Sum_probs=80.7
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC--CC-------------------CCCcceeeeEEEEEEECCeEEEEEEEeC
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EE-------------------LSPTIGVDFKIKHVALGGKKMKLAIWDT 68 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 68 (211)
..+.++|+++|++|+|||||+++|+.... .. .....|.++......+....+.++||||
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT 89 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT 89 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence 45679999999999999999999996421 00 0112222222222223334467999999
Q ss_pred CCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 69 AGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 69 ~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
||+..+...+..++..+|++|+|+|+++...... .. +..... ..++|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~-~~~~~~----~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RK-LMEVTR----LRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HH-HHHHHT----TTTCCEEEEEECTTSCC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HH-HHHHHH----HcCCCEEEEEcCcCCcc
Confidence 9999998888888999999999999998644322 11 222222 46799999999999854
No 176
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.80 E-value=5.5e-19 Score=133.20 Aligned_cols=127 Identities=18% Similarity=0.139 Sum_probs=85.4
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccccc-------c--c
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTS-------S--Y 81 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-------~--~ 81 (211)
...++|+|+|.+|+|||||+|+|++..+....+..+++.......+......+.||||||...+..... . .
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 357999999999999999999999887644445555544444444444456799999999866543221 1 1
Q ss_pred ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhc-CCCCCcEEEEEeCCCCCCCcccC
Q 028292 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYS-TNQDCIKLLVGNKVDKESERVVS 138 (211)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~ 138 (211)
...+|++++|+|++.. ++......|+..+.... ....+|+++|+||+|+.+.....
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~ 173 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP 173 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCC
Confidence 3478999999998653 33333222555554432 12237999999999997655433
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.80 E-value=5e-19 Score=148.21 Aligned_cols=118 Identities=15% Similarity=0.101 Sum_probs=83.0
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCC----------------cceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSP----------------TIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (211)
...+..+|+++|+.|+|||||+++|++.... .... ..+.++......+....+.++||||||+
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 3456789999999999999999999853321 0000 1122333333333334578999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
..+...+..++..+|++++|+|+++....... . +...+. ..++|+++++||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~-~~~~~~----~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE-R-AWTVAE----RLGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-H-HHHHHH----HTTCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHH-H-HHHHHH----HccCCEEEEecCCchh
Confidence 99988888899999999999999876554333 2 333333 2578999999999986
No 178
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.80 E-value=8.9e-19 Score=138.60 Aligned_cols=161 Identities=22% Similarity=0.198 Sum_probs=108.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccc----cccccc---cccCcc
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERF----RTLTSS---YYRGAQ 86 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~---~~~~~d 86 (211)
.|+|+|++|||||||++++++... ....+..........+..++ ...+.+||+||.... ..+... .+..++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 478999999999999999998753 11111111122222333333 246889999996432 112222 245689
Q ss_pred EEEEEEECCChhcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 87 GIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 87 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
.++.++|++ ...+..+.. +...+..+.. ....|.++|+||+|+... ...++..+.....+++++.+||++++|++
T Consensus 238 ~lL~vvDls-~~~~~~ls~-g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp EEEEEEETT-SCHHHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred hhhEEeCCc-cCCHHHHHH-HHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 999999998 555666555 4444443321 236889999999998554 23344445555667899999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 028292 166 QCFEELVLKILDTPS 180 (211)
Q Consensus 166 ~~~~~i~~~~~~~~~ 180 (211)
+++++|.+.+.+...
T Consensus 314 eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 314 ALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999987654
No 179
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.79 E-value=3.4e-19 Score=137.22 Aligned_cols=166 Identities=15% Similarity=0.191 Sum_probs=100.7
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC-CC----CCCcceeeeEEE--------------------------------
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF-EE----LSPTIGVDFKIK-------------------------------- 52 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~----~~~~~~~~~~~~-------------------------------- 52 (211)
.....+|+|+|.+|+|||||+|+|++..+ +. ....++......
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 34567999999999999999999998876 11 111111000000
Q ss_pred ---------------------EEE-ECCeEEEEEEEeCCCccc-------------ccccccccccCccEEEEEEECCCh
Q 028292 53 ---------------------HVA-LGGKKMKLAIWDTAGQER-------------FRTLTSSYYRGAQGIIMVYDVTRR 97 (211)
Q Consensus 53 ---------------------~~~-~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~d~~ilv~d~~~~ 97 (211)
.+. .......+.||||||... +......++..+|++++|+|..+.
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 000 111124689999999643 344556678899999999997443
Q ss_pred hcH-HHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC------CCCHHHHHHH
Q 028292 98 DTF-TNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT------RVNVEQCFEE 170 (211)
Q Consensus 98 ~s~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~v~~~~~~ 170 (211)
... ..... +...+. ..+.|+++|+||+|+........+.+......++..++++++.. +.|+.+++..
T Consensus 181 ~~~~~~~~~-i~~~~~----~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 181 DLANSDALQ-LAKEVD----PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp CSTTCSHHH-HHHHHC----SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred chhhhHHHH-HHHHhC----CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 211 11111 222222 46799999999999965544222222211111225666666544 7899999999
Q ss_pred HHHHHHcCCC
Q 028292 171 LVLKILDTPS 180 (211)
Q Consensus 171 i~~~~~~~~~ 180 (211)
+.+.+.....
T Consensus 256 ~~~~~~~~~~ 265 (315)
T 1jwy_B 256 EILYFKNHPI 265 (315)
T ss_dssp HHHHHHTCTT
T ss_pred HHHHHhCCCc
Confidence 9998877554
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.79 E-value=4.3e-19 Score=149.19 Aligned_cols=163 Identities=17% Similarity=0.179 Sum_probs=107.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccee--------------eeE--------------------------
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGV--------------DFK-------------------------- 50 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~--------------~~~-------------------------- 50 (211)
...++|+|+|.+|+|||||+|+|++.........+++ +..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 3679999999999999999999998876332222222 000
Q ss_pred ---------------EEEEEECCeE--EEEEEEeCCCccc---ccccccccccCccEEEEEEECCChhcHHHHHHHHHHH
Q 028292 51 ---------------IKHVALGGKK--MKLAIWDTAGQER---FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKE 110 (211)
Q Consensus 51 ---------------~~~~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~ 110 (211)
...+.+.... ..+.||||||... .......++.++|++|+|+|++++.+...... |...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY-LENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHH
Confidence 0000000000 2589999999554 33455677889999999999998877766543 4333
Q ss_pred HHhhcCCCCCcEEEEEeCCCCCCCcccCHH----------HHHHH----HH-H--------hCCcEEEeccC--------
Q 028292 111 IDLYSTNQDCIKLLVGNKVDKESERVVSKK----------EGIDF----AR-E--------YGCLFLECSAK-------- 159 (211)
Q Consensus 111 ~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~----------~~~~~----~~-~--------~~~~~~~~Sa~-------- 159 (211)
+. ..+.|+++|+||+|+.....+..+ ..... .. . ...+++++||+
T Consensus 226 l~----~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 IK----GRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp TT----TSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred HH----hhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 32 347789999999998543211110 11111 11 1 12478999999
Q ss_pred ------CCCCHHHHHHHHHHHHHcC
Q 028292 160 ------TRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 160 ------~~~~v~~~~~~i~~~~~~~ 178 (211)
++.|+++++.+|.+.+.+.
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHHHT
T ss_pred CchhhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999999887643
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.79 E-value=7.9e-19 Score=147.51 Aligned_cols=119 Identities=18% Similarity=0.238 Sum_probs=83.2
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCC--CCC---CC------------CcceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDT--FEE---LS------------PTIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~---~~------------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (211)
+..+..+|+|+|++|+|||||+++|+... +.. .. ...+.+.......+....+.++||||||+
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~ 87 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGH 87 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCc
Confidence 34678999999999999999999998421 100 00 01122222212222223467999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
..+...+..++..+|++|+|+|+++..++..... |.. +. ..++|+++++||+|+..
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~-~~----~~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQ-AE----KYKVPRIAFANKMDKTG 143 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHH-HH----HTTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHH-HH----HcCCCEEEEEECCCccc
Confidence 9998888999999999999999999887766544 443 22 25799999999999854
No 182
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.77 E-value=2.8e-19 Score=136.52 Aligned_cols=163 Identities=20% Similarity=0.250 Sum_probs=87.8
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhC-CCCCCC---------CcceeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSD-TFEELS---------PTIGVDFKIKHVALGGKKMKLAIWDTAGQ-------ER 73 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~-~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~ 73 (211)
.-.++|+|+|++|+|||||+++|.+. .+.... ++.........+...+....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34589999999999999999998875 332111 11111111122222344568999999997 44
Q ss_pred cccccc-------ccccC-------------ccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 74 FRTLTS-------SYYRG-------------AQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 74 ~~~~~~-------~~~~~-------------~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
+..... .++.+ +++++++.+.+. .+++.... ..+.... .++|+++|+||.|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l~--~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAIH--NKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHHT--TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHHH--hcCCEEEEEEeCCCCC
Confidence 444332 22222 234444444332 12333221 2233322 4689999999999865
Q ss_pred Cccc--CHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHcCCC
Q 028292 134 ERVV--SKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILDTPS 180 (211)
Q Consensus 134 ~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~~ 180 (211)
.+++ ..+++.+++..++++++++||+++ +++++|.++.+.+.+..+
T Consensus 170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 4433 245777888899999999999999 999999999999976544
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.77 E-value=8.9e-18 Score=141.32 Aligned_cols=119 Identities=16% Similarity=0.168 Sum_probs=83.9
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCC--CCCC---C------------CcceeeeEEE--EEEEC-----CeEEEEE
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDT--FEEL---S------------PTIGVDFKIK--HVALG-----GKKMKLA 64 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~---~------------~~~~~~~~~~--~~~~~-----~~~~~~~ 64 (211)
...+..+|+|+|+.++|||||+++|+... +... . ...+.+.... .+.+. +..+.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 44577899999999999999999997531 1100 0 0122222222 22222 2338899
Q ss_pred EEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
||||||+.+|...+...++.+|++|+|+|+++..+...... |.. .. ..++|+++++||+|+..
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~-~~~-~~----~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETV-WRQ-AN----KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHH-HHH-HH----HcCCCEEEEEeCCCccc
Confidence 99999999998888889999999999999998766554433 332 22 35789999999999854
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=3.3e-18 Score=143.77 Aligned_cols=119 Identities=15% Similarity=0.173 Sum_probs=82.9
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhC--CCCC---CCC------------cceeeeEEEEEEECCeEEEEEEEeCCCc
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSD--TFEE---LSP------------TIGVDFKIKHVALGGKKMKLAIWDTAGQ 71 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~---~~~------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~ 71 (211)
+..+..+|+|+|++|+|||||+++|+.. .+.. ..+ ..+.+.......+....+.++||||||+
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 3457899999999999999999999952 2110 000 1111111111122222467999999999
Q ss_pred ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 72 ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 72 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
.++...+..+++.+|++|+|+|+++..++..... |.. +. ..++|+++|+||+|+..
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~-~~----~~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQ-AT----TYGVPRIVFVNKMDKLG 141 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHH-HH----HTTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHH-HH----HcCCCEEEEEECCCccc
Confidence 9998888889999999999999999877766544 433 32 25789999999999854
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.76 E-value=7e-20 Score=144.55 Aligned_cols=83 Identities=24% Similarity=0.237 Sum_probs=47.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeee----EEEEE-------------------EECC-eEEEEEEEeCC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDF----KIKHV-------------------ALGG-KKMKLAIWDTA 69 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~----~~~~~-------------------~~~~-~~~~~~i~D~~ 69 (211)
++|+++|.+|||||||+|+|++... .....++++. ....+ .+++ ...++.|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 5899999999999999999998763 2222222211 11111 1122 24789999999
Q ss_pred Cccc----ccccc---cccccCccEEEEEEECCCh
Q 028292 70 GQER----FRTLT---SSYYRGAQGIIMVYDVTRR 97 (211)
Q Consensus 70 g~~~----~~~~~---~~~~~~~d~~ilv~d~~~~ 97 (211)
|... ...+. ...++++|++++|+|+++.
T Consensus 80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 9743 22222 2457899999999999875
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.75 E-value=6.5e-19 Score=137.99 Aligned_cols=157 Identities=15% Similarity=0.169 Sum_probs=102.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcce---eee--------------------------------------
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIG---VDF-------------------------------------- 49 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~---~~~-------------------------------------- 49 (211)
...+|+|+|++|||||||+++|++..+ +....... ...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 445999999999999999999999776 21111110 000
Q ss_pred -----------EEEEEEE-CCeEEEEEEEeCCCcccc-------------cccccccccCccEEEEEEECCChhcHHHHH
Q 028292 50 -----------KIKHVAL-GGKKMKLAIWDTAGQERF-------------RTLTSSYYRGAQGIIMVYDVTRRDTFTNLA 104 (211)
Q Consensus 50 -----------~~~~~~~-~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~ 104 (211)
....+.+ ......+++|||||...+ ..+...++.++|++|+|+|..+......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~-- 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--
Confidence 0001110 111235899999997665 4556677899999999998765433221
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Q 028292 105 DIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 105 ~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
. +...+.... ..+.|+++|+||+|+.+......+.+..+....+.+|+.++++++.++++.+..+.
T Consensus 191 ~-~~~l~~~~~-~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 191 D-AIKISREVD-PSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp H-HHHHHHHSC-TTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred H-HHHHHHHhc-ccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 1 344444333 56789999999999976655544444444455678899999999888877655543
No 187
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.75 E-value=3.1e-18 Score=135.60 Aligned_cols=157 Identities=18% Similarity=0.223 Sum_probs=82.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCC-CC--------CCcceeeeEEEEEEE--CCeEEEEEEEeCCCccccc-----
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE-EL--------SPTIGVDFKIKHVAL--GGKKMKLAIWDTAGQERFR----- 75 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~--------~~~~~~~~~~~~~~~--~~~~~~~~i~D~~g~~~~~----- 75 (211)
-.++|+|+|++|+|||||++.|++..+. .. .++.+ .....+.+ .+....+++||++|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~--~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~ 107 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ--VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 107 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCE--EEEEECC------CEEEEEEECC-----------
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcccee--eeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence 4578999999999999999999987651 11 11111 11122222 2333578999999964421
Q ss_pred --c------------------cccccccCccEEEEEEECCCh-hcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 76 --T------------------LTSSYYRGAQGIIMVYDVTRR-DTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 76 --~------------------~~~~~~~~~d~~ilv~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
. +.+.++.++++.+++|+.... .++......|+..+. .++|+|+|+||+|+...
T Consensus 108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccH
Confidence 1 123345566655555555432 234333322444432 47999999999999765
Q ss_pred cccCH--HHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Q 028292 135 RVVSK--KEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 135 ~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 175 (211)
+.+.. ..+.+++..++++++++|++++.++++++..+...+
T Consensus 183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 55554 567778888899999999999999998877776543
No 188
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.74 E-value=7.8e-18 Score=131.21 Aligned_cols=131 Identities=16% Similarity=0.188 Sum_probs=94.1
Q ss_pred CcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------hhcHHHHHHHHHHHHH
Q 028292 43 PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLADIWAKEID 112 (211)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~ 112 (211)
+|.|.. ...+.++ .+.+.+||++|++.++..|..++.+++++|+|||+++ ..+++....+|...+.
T Consensus 187 ~T~Gi~--~~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 187 PTKGIH--EYDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp CCSSEE--EEEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred CccceE--EEEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 455543 3344444 4779999999999999999999999999999999999 6788888885555444
Q ss_pred hhcCCCCCcEEEEEeCCCCCCCc----------------ccCHHHHHHHHH-----------HhCCcEEEeccCCCCCHH
Q 028292 113 LYSTNQDCIKLLVGNKVDKESER----------------VVSKKEGIDFAR-----------EYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 113 ~~~~~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~v~ 165 (211)
... ..++|+++++||+|+...+ .+..+++..++. ..++.++++||+++.||+
T Consensus 263 ~~~-~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~ 341 (362)
T 1zcb_A 263 NRV-FSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIR 341 (362)
T ss_dssp CGG-GTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHH
T ss_pred chh-hCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHH
Confidence 322 4679999999999984321 256677777652 345788999999999999
Q ss_pred HHHHHHHHHHHcC
Q 028292 166 QCFEELVLKILDT 178 (211)
Q Consensus 166 ~~~~~i~~~~~~~ 178 (211)
++|.++.+.+.+.
T Consensus 342 ~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 342 LVFRDVKDTILHD 354 (362)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 189
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.74 E-value=1.9e-18 Score=132.02 Aligned_cols=133 Identities=19% Similarity=0.162 Sum_probs=104.5
Q ss_pred HHHHHHhhCCC--CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCChh-cHHHHH
Q 028292 28 TLLLSFTSDTF--EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLA 104 (211)
Q Consensus 28 tli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~ 104 (211)
+|+.+++.+.+ ..+.|+.|..+. ..+..++ .+.+||+ ++++..+++.+++++|++|+|||++++. +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 68888888877 457788884443 3322222 6899999 8899999999999999999999999997 677666
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhC--CcEEEeccCCCCCHHHHHHHHHH
Q 028292 105 DIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYG--CLFLECSAKTRVNVEQCFEELVL 173 (211)
Q Consensus 105 ~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~ 173 (211)
. |+..+.. .++|+++|+||+|+.+.+.+ +++.+++..++ .+++++||++|.|++++|.++..
T Consensus 106 ~-~l~~~~~----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 106 K-FLVLAEK----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp H-HHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred H-HHHHHHH----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 6 6665543 57999999999999654433 45667777777 89999999999999999987653
No 190
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.73 E-value=1.3e-17 Score=130.96 Aligned_cols=124 Identities=18% Similarity=0.138 Sum_probs=95.3
Q ss_pred EEEEECCeEEEEEEEeCCCcccccccccccccCccEEEEEEECCC----------hhcHHHHHHHHHHHHHhhcCCCCCc
Q 028292 52 KHVALGGKKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTR----------RDTFTNLADIWAKEIDLYSTNQDCI 121 (211)
Q Consensus 52 ~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p 121 (211)
..+.+++ +.+.+||++|++.++..|..++++++++|+|||+++ ..+|+.... |...+.......++|
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~p 286 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTIS 286 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCC
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCe
Confidence 3445554 789999999999999999999999999999999999 889999888 444444332246799
Q ss_pred EEEEEeCCCCCCCcc---c---------------------------CHHHHHHHHH-----H--------hCCcEEEecc
Q 028292 122 KLLVGNKVDKESERV---V---------------------------SKKEGIDFAR-----E--------YGCLFLECSA 158 (211)
Q Consensus 122 ~ivv~nK~D~~~~~~---~---------------------------~~~~~~~~~~-----~--------~~~~~~~~Sa 158 (211)
++|++||+|+...+. + ..+++..++. . .++.++++||
T Consensus 287 iiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA 366 (402)
T 1azs_C 287 VILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCA 366 (402)
T ss_dssp EEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCT
T ss_pred EEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEe
Confidence 999999999843221 1 1345555532 1 2456789999
Q ss_pred CCCCCHHHHHHHHHHHHHcC
Q 028292 159 KTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 159 ~~~~~v~~~~~~i~~~~~~~ 178 (211)
+++.||+++|.++.+.+...
T Consensus 367 ~d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 367 VDTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp TCHHHHHHHHHHHHHHHHHH
T ss_pred ecCcCHHHHHHHHHHHHHHH
Confidence 99999999999999888654
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.69 E-value=1.8e-17 Score=129.45 Aligned_cols=105 Identities=12% Similarity=0.083 Sum_probs=70.1
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH
Q 028292 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK 139 (211)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 139 (211)
.+.+.||||||.. ......+..+|++|+|+|....+.+..+.. . ....|+++|+||+|+........
T Consensus 171 ~~~~iiiDTpGi~---~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~--~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 171 GFDVILIETVGVG---QSEVAVANMVDTFVLLTLARTGDQLQGIKK--------G--VLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TCCEEEEEECSCS---SHHHHHHTTCSEEEEEEESSTTCTTTTCCT--------T--SGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCEEEEeCCCCC---cHHHHHHHhCCEEEEEECCCCCccHHHHHH--------h--HhhcCCEEEEECCCCcChhHHHH
Confidence 3578999999943 223334578999999999877654422211 0 13468999999999853322111
Q ss_pred --HHHHHHHH-------HhCCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 140 --KEGIDFAR-------EYGCLFLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 140 --~~~~~~~~-------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
.+...... .++.+++++||++|+|+++++++|.+.+..
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 11111111 125789999999999999999999998764
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.69 E-value=5.6e-17 Score=118.56 Aligned_cols=154 Identities=16% Similarity=0.097 Sum_probs=95.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCC-C----ccee----------eeEEEEEEE----------------CCeE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS-P----TIGV----------DFKIKHVAL----------------GGKK 60 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~----~~~~----------~~~~~~~~~----------------~~~~ 60 (211)
+..+|+++|.+|||||||+++|+........ . ..+. ......+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 5679999999999999999999875321100 0 0000 001111111 1123
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH
Q 028292 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKK 140 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 140 (211)
+.+.+|||+|...... .+....+.+++|+|+.+.... ... +... .+.|+++|+||+|+.+......+
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HPEI-------FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CHHH-------HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hhhh-------hhcCCEEEEecccCCcchhhHHH
Confidence 4678899988411111 111256889999998776421 111 1111 24788999999998543334556
Q ss_pred HHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292 141 EGIDFAREY--GCLFLECSAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 141 ~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
+..++.... +++++++||++|.|+++++++|.+.+...
T Consensus 176 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 176 KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 666666554 46899999999999999999999988654
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=1.1e-15 Score=118.48 Aligned_cols=146 Identities=18% Similarity=0.161 Sum_probs=89.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCe---------------EEEEEEEeCCCccccc--
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK---------------KMKLAIWDTAGQERFR-- 75 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~-- 75 (211)
++|+++|.+|||||||+|+|++... ....|....+.....+.+.+. ...+.+|||||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 6899999999999999999998764 111111111111112333332 1469999999976542
Q ss_pred --ccc---cccccCccEEEEEEECCCh----------hcHHHHHHHHHHH------------------------------
Q 028292 76 --TLT---SSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKE------------------------------ 110 (211)
Q Consensus 76 --~~~---~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~------------------------------ 110 (211)
.+. ..+++++|++++|+|+++. +.++++.. +...
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~-i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDT-INTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHH-HHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 222 2347899999999999862 22333221 1000
Q ss_pred ----------H-------------------HhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEeccCC
Q 028292 111 ----------I-------------------DLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSAKT 160 (211)
Q Consensus 111 ----------~-------------------~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (211)
+ ..+.....+|+++++|+.|..-......+.+.+++...+.+++++||+.
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 1 1111234699999999999642222335566778888899999999653
No 194
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.68 E-value=8.9e-17 Score=131.67 Aligned_cols=119 Identities=15% Similarity=0.140 Sum_probs=83.6
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCC---------------------CCCCCCcceeeeEEEEEEECCeEEEEEEEe
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDT---------------------FEELSPTIGVDFKIKHVALGGKKMKLAIWD 67 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 67 (211)
+..+.-||+|+|+.++|||||..+|+... +.......|.++......+....+.++|+|
T Consensus 27 e~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlID 106 (548)
T 3vqt_A 27 EAARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLD 106 (548)
T ss_dssp HHHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEEC
T ss_pred cccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEe
Confidence 44577899999999999999999997321 111112223333333333334457899999
Q ss_pred CCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
|||+.+|.......++-+|++|+|+|+...-.-+.... |... . ..++|+++++||+|...
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v-~~~a-~----~~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKL-MDVC-R----MRATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHH-HHHH-H----HTTCCEEEEEECTTSCC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHH-HHHH-H----HhCCceEEEEecccchh
Confidence 99999999999999999999999999998755544333 4332 2 47899999999999754
No 195
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.67 E-value=2.8e-18 Score=134.03 Aligned_cols=158 Identities=16% Similarity=0.120 Sum_probs=93.2
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCCcce----------------------eeeE-------------
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-----ELSPTIG----------------------VDFK------------- 50 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-----~~~~~~~----------------------~~~~------------- 50 (211)
....+|+|+|.+|||||||+|+|++..+. .....++ +++.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 45679999999999999999999998762 1111122 0000
Q ss_pred ----------EEEEEEC-CeEEEEEEEeCCCcc-------------cccccccccccCcc-EEEEEEECCChhcHHHHHH
Q 028292 51 ----------IKHVALG-GKKMKLAIWDTAGQE-------------RFRTLTSSYYRGAQ-GIIMVYDVTRRDTFTNLAD 105 (211)
Q Consensus 51 ----------~~~~~~~-~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~d-~~ilv~d~~~~~s~~~~~~ 105 (211)
...+.+. .....+.||||||.. .+..+...++.+.+ ++++|.|++....-..
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~--- 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--- 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---
Confidence 0001111 113569999999953 23344555665555 5555666654322112
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH--HHHHhC-CcEEEeccCCCCCHHHHHHHHHH
Q 028292 106 IWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID--FAREYG-CLFLECSAKTRVNVEQCFEELVL 173 (211)
Q Consensus 106 ~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~ 173 (211)
+...+.... ..+.|+++|+||+|+.+........... +....+ .+++++||+++.|++++++++.+
T Consensus 186 -~~~i~~~~~-~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 -ALKVAKEVD-PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp -HHHHHHHHC-TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred -HHHHHHHhC-cCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 222233222 4679999999999996543321211110 001123 25788999999999999999876
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.66 E-value=1.1e-18 Score=128.06 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=91.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCcceeeeE------------EEEEEEC-Ce------------------
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEE-LSPTIGVDFK------------IKHVALG-GK------------------ 59 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~------------~~~~~~~-~~------------------ 59 (211)
+.++|+|+|.+|||||||+++|+...+.. ..++.+.++. ...+.++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 56899999999999999999999875522 2223222221 1111111 10
Q ss_pred -EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 028292 60 -KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS 138 (211)
Q Consensus 60 -~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 138 (211)
.+.+.++|++|.-.... .+-...+..+.+.|......... . +... .+.|.++|+||+|+.+.....
T Consensus 117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~--~-~~~~-------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE--K-HPGI-------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT--T-CHHH-------HTTCSEEEEECGGGHHHHTCC
T ss_pred CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh--h-hhhH-------hhcCCEEEEeccccCchhHHH
Confidence 01345556555211100 01112344566666432211100 0 1111 136789999999985543355
Q ss_pred HHHHHHHHHHh--CCcEEEeccCCCCCHHHHHHHHHHHHHcC
Q 028292 139 KKEGIDFAREY--GCLFLECSAKTRVNVEQCFEELVLKILDT 178 (211)
Q Consensus 139 ~~~~~~~~~~~--~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~ 178 (211)
.++...++... +++++++||++|.|++++|++|.+.+...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 184 IKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp HHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 66666666655 57899999999999999999999887653
No 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.65 E-value=7.8e-16 Score=126.24 Aligned_cols=123 Identities=17% Similarity=0.250 Sum_probs=81.6
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCcceeeeEEEEEEECCe-----------------------E-
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFE--ELSPTIGVDFKIKHVALGGK-----------------------K- 60 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~-----------------------~- 60 (211)
.......++|+|+|.+|+|||||+|+|++..+. ...+...++...... .... .
T Consensus 59 ~~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~-~~~~~~i~~g~~l~~~~~~~~~~L~~~g~ 137 (550)
T 2qpt_A 59 DADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVM-HGETEGTVPGNALVVDPEKPFRKLNPFGN 137 (550)
T ss_dssp STTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEE-CCSSSEEECCC------------------
T ss_pred cccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEE-ECCcccccCCceeeecCcccHHHHhhhcc
Confidence 344567899999999999999999999998763 222222222111110 0000 0
Q ss_pred ----------------EEEEEEeCCCccc-----------ccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHh
Q 028292 61 ----------------MKLAIWDTAGQER-----------FRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDL 113 (211)
Q Consensus 61 ----------------~~~~i~D~~g~~~-----------~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~ 113 (211)
..+.||||||... +...+..++..+|++|+|+|+++....+.... +...+.
T Consensus 138 ~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~-~l~~l~- 215 (550)
T 2qpt_A 138 TFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSE-AIGALR- 215 (550)
T ss_dssp CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHH-HHHHTT-
T ss_pred cccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHH-HHHHHH-
Confidence 2589999999764 33455567788999999999988644444433 444333
Q ss_pred hcCCCCCcEEEEEeCCCCCCCc
Q 028292 114 YSTNQDCIKLLVGNKVDKESER 135 (211)
Q Consensus 114 ~~~~~~~p~ivv~nK~D~~~~~ 135 (211)
..+.|+++|+||+|+....
T Consensus 216 ---~~~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 216 ---GHEDKIRVVLNKADMVETQ 234 (550)
T ss_dssp ---TCGGGEEEEEECGGGSCHH
T ss_pred ---hcCCCEEEEEECCCccCHH
Confidence 3568999999999986543
No 198
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.65 E-value=3.9e-16 Score=133.75 Aligned_cols=117 Identities=19% Similarity=0.185 Sum_probs=86.3
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhCCC--CC---------------C--CCcceeeeEEEEEE------------ECC
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSDTF--EE---------------L--SPTIGVDFKIKHVA------------LGG 58 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~---------------~--~~~~~~~~~~~~~~------------~~~ 58 (211)
..+..||+|+|+.++|||||+++|+.... .. . ..+.........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 34678999999999999999999986421 00 0 01111111222222 234
Q ss_pred eEEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 59 KKMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
..+.++||||||+.+|...+..+++.+|++|+|+|+++..+++.... |.... ..++|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~-----~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQAL-----GERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHH-----HTTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHH-----HcCCCeEEEEECCCcc
Confidence 47899999999999999999999999999999999999988877544 44332 3578999999999984
No 199
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.62 E-value=2.8e-15 Score=112.29 Aligned_cols=113 Identities=17% Similarity=-0.002 Sum_probs=70.6
Q ss_pred EEEEEEeCCCccccccccc------ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 61 MKLAIWDTAGQERFRTLTS------SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
+.+.||||||......... ..+.. +++|+++|.............+........ ..++|+++|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL-RLGATTIPALNKVDLLSE 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH-HHTSCEEEEECCGGGCCH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc-ccCCCeEEEEeccccccc
Confidence 5799999999765432211 23456 888999988654433332221111111111 346899999999998553
Q ss_pred cccCHHHHHH----------------------------HHHHhC--CcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 135 RVVSKKEGID----------------------------FAREYG--CLFLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 135 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
..+ ++..+ +...++ ++++++||+++.|+++++++|.+.+..
T Consensus 187 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 187 EEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 321 11111 123333 489999999999999999999988754
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.61 E-value=2e-15 Score=117.54 Aligned_cols=102 Identities=8% Similarity=0.086 Sum_probs=62.1
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHH
Q 028292 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKK 140 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 140 (211)
+.+.|+||+|.... .......+|++++|+|++.+...+.+.. . ....|.++|+||+|+.+.... ..
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~----~------il~~~~ivVlNK~Dl~~~~~~-~~ 232 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR----G------IIEMADLVAVTKSDGDLIVPA-RR 232 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------------CCSCSEEEECCCSGGGHHHH-HH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH----H------HHhcCCEEEEeeecCCCchhH-HH
Confidence 46889999995321 2334568999999999987643222111 0 124578999999998432111 01
Q ss_pred HHHHHHH----------HhCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 141 EGIDFAR----------EYGCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 141 ~~~~~~~----------~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
....+.. .+..+++.+||++|.|+++++++|.+.+.
T Consensus 233 ~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 233 IQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 1112211 12457899999999999999999998764
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.60 E-value=2.3e-15 Score=117.36 Aligned_cols=151 Identities=19% Similarity=0.132 Sum_probs=90.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECC-------------------eEEEEEEEeCCCccc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGG-------------------KKMKLAIWDTAGQER 73 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~ 73 (211)
++|+++|.+|+|||||+++|++... ....+....+.......+.+ ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999998642 11111111111111112221 235799999999765
Q ss_pred cc----cc---ccccccCccEEEEEEECCCh----------hcHHHHHHHHHHH--------------------------
Q 028292 74 FR----TL---TSSYYRGAQGIIMVYDVTRR----------DTFTNLADIWAKE-------------------------- 110 (211)
Q Consensus 74 ~~----~~---~~~~~~~~d~~ilv~d~~~~----------~s~~~~~~~~~~~-------------------------- 110 (211)
.. .+ ....++++|++++|+|+++. +.+.++.. +...
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~-i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~ 160 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEV-VETELLLADLATLERRLERLRKEARADRER 160 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHH-HhhHHHHccHHHHHHHHHHHHhhhccchhH
Confidence 42 12 22347899999999999852 12222211 0000
Q ss_pred -------------H-------------------HhhcCCCCCcEEEEEeCCCCC--CC-cccCHHHHHHHHHHhCCcEEE
Q 028292 111 -------------I-------------------DLYSTNQDCIKLLVGNKVDKE--SE-RVVSKKEGIDFAREYGCLFLE 155 (211)
Q Consensus 111 -------------~-------------------~~~~~~~~~p~ivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~ 155 (211)
+ ..+.....+|+++++||.|.. .. .....+.+.+++...+.++++
T Consensus 161 ~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~ 240 (368)
T 2dby_A 161 LPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVV 240 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEE
Confidence 0 001113348999999999842 22 123456677788888999999
Q ss_pred eccCCCCCHH
Q 028292 156 CSAKTRVNVE 165 (211)
Q Consensus 156 ~Sa~~~~~v~ 165 (211)
+||+.+.++.
T Consensus 241 iSAk~E~el~ 250 (368)
T 2dby_A 241 VSARLEAELA 250 (368)
T ss_dssp ECHHHHHHHH
T ss_pred eechhHHHHH
Confidence 9988744333
No 202
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.59 E-value=9.2e-15 Score=114.01 Aligned_cols=153 Identities=17% Similarity=0.120 Sum_probs=94.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeE--EEEEEECCeEEEEEEEeCCCccccc-------cccccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFK--IKHVALGGKKMKLAIWDTAGQERFR-------TLTSSY 81 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~ 81 (211)
+...+|+++|.||||||||+|+|++... .....++++.. ...+.+.+ .+++|+||||...-. ......
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 3457999999999999999999998764 33344444443 34455555 458889999953221 112234
Q ss_pred ccCccEEEEEEECCChhcHHHHHHHHHHHHHhh-cCCCCCcEEEEEeCCCCCC--------CcccCHHHHHHHHHHhCCc
Q 028292 82 YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLY-STNQDCIKLLVGNKVDKES--------ERVVSKKEGIDFAREYGCL 152 (211)
Q Consensus 82 ~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~ 152 (211)
++.+|++++|+|+++|..-... +...+... ......|.++++||.|... ......++.......+.+.
T Consensus 147 i~~ad~il~vvD~~~p~~~~~~---i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt 223 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKPLHHKQI---IEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRIN 223 (376)
T ss_dssp HHHCSEEEEEEETTSHHHHHHH---HHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCC
T ss_pred HHhcCccccccccCccHHHHHH---HHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhccc
Confidence 6789999999999987432222 22223222 1134578889999999632 2345566666666666554
Q ss_pred EEEeccCCCCCHHHHHH
Q 028292 153 FLECSAKTRVNVEQCFE 169 (211)
Q Consensus 153 ~~~~Sa~~~~~v~~~~~ 169 (211)
--++-...+...+++.+
T Consensus 224 ~kpv~~~~nv~eddl~d 240 (376)
T 4a9a_A 224 SAEIAFRCDATVDDLID 240 (376)
T ss_dssp SEEEEECSCCCHHHHHH
T ss_pred CCCeeecccCCHHHHHH
Confidence 33333344455555543
No 203
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.57 E-value=1.1e-15 Score=118.79 Aligned_cols=104 Identities=16% Similarity=0.117 Sum_probs=65.3
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH
Q 028292 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK 139 (211)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 139 (211)
.+.+.||||||....... ....+|++++|+|++....+..+.. . ..+.|.++|+||+|+.....+..
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~------~----~~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK------G----LMEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH------H----HHHHCSEEEECCCCTTCHHHHHH
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH------h----hhcccCEEEEECCCCCChHHHHH
Confidence 357999999996543322 3578999999999976533211110 0 12467899999999854322211
Q ss_pred --HHHHHHHHHh-------CCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 140 --KEGIDFAREY-------GCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 140 --~~~~~~~~~~-------~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
++........ ..+++++||++|.|+++++++|.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1121211121 357899999999999999999998775
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.56 E-value=6.6e-16 Score=128.86 Aligned_cols=115 Identities=16% Similarity=0.204 Sum_probs=82.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCC--CCC---------CC------CcceeeeEEEEEEECCeEEEEEEEeCCCccccc
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDT--FEE---------LS------PTIGVDFKIKHVALGGKKMKLAIWDTAGQERFR 75 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~--~~~---------~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~ 75 (211)
..||+|+|+.++|||||..+|+... ... +. ...|.++......+....+.++|+||||+.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 3589999999999999999997421 100 00 111344444445555566789999999999999
Q ss_pred ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
......++-+|++|+|+|+...-.-+.... |.. .. ..++|.++++||+|...
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT~~v-~~~-a~----~~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQTRIL-FHA-LR----KMGIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHHHHH-HHH-HH----HHTCSCEECCEECCSSS
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHHHHH-HHH-HH----HcCCCeEEEEecccccc
Confidence 999999999999999999988644333222 333 22 35688999999999743
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.52 E-value=1.4e-13 Score=116.35 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=81.1
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhCC--------CC---------CCCCcceeeeEEE--EEEEC-----CeEEEEE
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSDT--------FE---------ELSPTIGVDFKIK--HVALG-----GKKMKLA 64 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~~--------~~---------~~~~~~~~~~~~~--~~~~~-----~~~~~~~ 64 (211)
+.++.-||+|+|+.++|||||..+|+... .. ......|.++... .+.+. ...+.++
T Consensus 9 p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iN 88 (709)
T 4fn5_A 9 PINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVN 88 (709)
T ss_dssp CGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEE
T ss_pred chHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEE
Confidence 44677899999999999999999997321 10 0111122222222 22222 2357899
Q ss_pred EEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC
Q 028292 65 IWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE 132 (211)
Q Consensus 65 i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 132 (211)
|+||||+.+|.......++-+|++|+|+|+...-..+.... |.+.. ..++|.++++||+|..
T Consensus 89 lIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v-~~~a~-----~~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 89 VIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV-WRQAN-----KYGVPRIVYVNKMDRQ 150 (709)
T ss_dssp EECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHH-----HHTCCEEEEEECSSST
T ss_pred EEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH-HHHHH-----HcCCCeEEEEcccccc
Confidence 99999999999999999999999999999988754443332 43333 3679999999999974
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.50 E-value=4.7e-14 Score=118.51 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=96.3
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccee-------------------------------------------
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGV------------------------------------------- 47 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~------------------------------------------- 47 (211)
....+|+|+|.+++|||||+|+|++..+-.......+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4567999999999999999999999765111110000
Q ss_pred -------eeEEEEEEE-CCeEEEEEEEeCCCccc-------------ccccccccc-cCccEEEEEEECCChhcHHHHHH
Q 028292 48 -------DFKIKHVAL-GGKKMKLAIWDTAGQER-------------FRTLTSSYY-RGAQGIIMVYDVTRRDTFTNLAD 105 (211)
Q Consensus 48 -------~~~~~~~~~-~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~d~~ilv~d~~~~~s~~~~~~ 105 (211)
......+.+ ......+.|+||||-.. +..+...++ ..+|++++|+|++......+...
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 000011111 01112578999999432 112233333 57899999999987643333212
Q ss_pred HHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH--HHhC-CcEEEeccCCCCCHHHHHHHHHHH
Q 028292 106 IWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA--REYG-CLFLECSAKTRVNVEQCFEELVLK 174 (211)
Q Consensus 106 ~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~--~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~ 174 (211)
+...+. ..+.|+++|+||+|+............... ...+ .+++.+||++|.|++++++.+.+.
T Consensus 209 -ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 -IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp -HHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred -HHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 333332 467999999999999765443222111000 0112 257889999999999999999873
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.47 E-value=1.9e-13 Score=104.35 Aligned_cols=97 Identities=21% Similarity=0.165 Sum_probs=76.9
Q ss_pred cccccccccccccCccEEEEEEECCChh-cHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC-HHHHHHHHHH
Q 028292 71 QERFRTLTSSYYRGAQGIIMVYDVTRRD-TFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS-KKEGIDFARE 148 (211)
Q Consensus 71 ~~~~~~~~~~~~~~~d~~ilv~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~ 148 (211)
++++..+.+.++.++|++++|+|++++. ++..+.. |+..+. ..++|+++|+||+|+.+...+. .++..+++..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~-~l~~~~----~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~ 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDN-MLVVYE----YFKVEPVIVFNKIDLLNEEEKKELERWISIYRD 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHH-HHHHHH----HTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHH-HHHHHH----hCCCCEEEEEEcccCCCccccHHHHHHHHHHHH
Confidence 5667777888999999999999999986 8876665 665554 3679999999999996544322 3455666777
Q ss_pred hCCcEEEeccCCCCCHHHHHHHHH
Q 028292 149 YGCLFLECSAKTRVNVEQCFEELV 172 (211)
Q Consensus 149 ~~~~~~~~Sa~~~~~v~~~~~~i~ 172 (211)
.+.+++++||++|.|+++++..+.
T Consensus 141 ~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 141 AGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHhhcc
Confidence 789999999999999999987753
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.44 E-value=3.1e-13 Score=104.63 Aligned_cols=104 Identities=8% Similarity=0.081 Sum_probs=63.9
Q ss_pred EEEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCH
Q 028292 60 KMKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSK 139 (211)
Q Consensus 60 ~~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~ 139 (211)
.+.+.|+||+|..... ......+|.+++++|....+..+.+.. .+ ...|.++++||+|+........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~----~i------~~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK----GI------FELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT----TH------HHHCSEEEEECCSTTCCHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH----HH------hccccEEEEEchhccCchhHHH
Confidence 3578999999964322 123467899999999865432211111 00 1245678889999744332222
Q ss_pred HHHHHHHHH----------hCCcEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 140 KEGIDFARE----------YGCLFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 140 ~~~~~~~~~----------~~~~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
....++... +..+++.+||+++.|++++++.|.+.+.
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222233221 1357899999999999999999988764
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.38 E-value=3.5e-13 Score=95.71 Aligned_cols=172 Identities=12% Similarity=0.016 Sum_probs=98.9
Q ss_pred CCCccccccCeeEEEEEEcCC-CCcHHHHHHHHhhCCC-C-------CCCCcceeeeEEEEEEECCe-E-----------
Q 028292 2 ASSTSQQEFDYLFKLLLIGDS-GVGKSTLLLSFTSDTF-E-------ELSPTIGVDFKIKHVALGGK-K----------- 60 (211)
Q Consensus 2 ~~~~~~~~~~~~~~i~v~G~~-~~GKstli~~l~~~~~-~-------~~~~~~~~~~~~~~~~~~~~-~----------- 60 (211)
+|.....-.....+++++|+. ..=+.+|+.++...+- . ......|.. +.+.+++. .
T Consensus 5 ~~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsg---v~~~~~~~~~fni~tlys~~~ 81 (227)
T 3l82_B 5 TSFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSG---VNFQLNNQHKFNILILYSTTR 81 (227)
T ss_dssp CCSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCC---EEEESSSSCEEEEEECSCC--
T ss_pred HHHHHHhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccc---eEEEECCeeEEEEEEeccCcH
Confidence 455555556677899999985 2345689999987652 1 011111111 11111111 0
Q ss_pred --------------EEEEEEeCC------CcccccccccccccCccEEEEEEECCChhcHHHHHHHH---HHHHHhhcCC
Q 028292 61 --------------MKLAIWDTA------GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIW---AKEIDLYSTN 117 (211)
Q Consensus 61 --------------~~~~i~D~~------g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~---~~~~~~~~~~ 117 (211)
-.+-....| |+..++..|+.|+.++|++|||+|.+|.+.++ ....+ ..++......
T Consensus 82 ~er~~~~~~~~~~~~k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L 160 (227)
T 3l82_B 82 KERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGS 160 (227)
T ss_dssp -----------------------------------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSC
T ss_pred HHhhhhhhhhhhhhhhcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhh
Confidence 012223333 78888999999999999999999999986554 33323 2222221113
Q ss_pred CCCcEEEEEeCC-CCCCCcccCHHHHHHHHH----HhCCcEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292 118 QDCIKLLVGNKV-DKESERVVSKKEGIDFAR----EYGCLFLECSAKTRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 118 ~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 179 (211)
.++|++|++||. |+.. .....++.+... ...+.+..|||++|+|+.+-++||.+.+..++
T Consensus 161 ~gapLLVlANKqqDlp~--Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 161 SGRPLLVLSCISQGDVK--RMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp SCSCEEEEEEESSTTSC--BCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred CCCeEEEEeCCCcCccC--CCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 689999999995 6633 344444433221 23457899999999999999999988775443
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.31 E-value=1.2e-12 Score=102.54 Aligned_cols=88 Identities=23% Similarity=0.204 Sum_probs=51.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCcceeeeEEEEEEECCe---------------EEEEEEEeCCCccccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-EELSPTIGVDFKIKHVALGGK---------------KMKLAIWDTAGQERFR 75 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~ 75 (211)
..++|+++|.+|||||||+|+|++... ....+..+.+.....+.+.+. ...+.+|||||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 457999999999999999999998765 222222222333334444332 2358999999976543
Q ss_pred c-------cccccccCccEEEEEEECCChhc
Q 028292 76 T-------LTSSYYRGAQGIIMVYDVTRRDT 99 (211)
Q Consensus 76 ~-------~~~~~~~~~d~~ilv~d~~~~~s 99 (211)
. .+..+++++|++++|+|+++.++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 2 44566789999999999986443
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.27 E-value=1e-10 Score=91.84 Aligned_cols=85 Identities=24% Similarity=0.273 Sum_probs=57.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCCCCC--CcceeeeEEEEEEECCe---------------EEEEEEEeCCCccc-
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFEELS--PTIGVDFKIKHVALGGK---------------KMKLAIWDTAGQER- 73 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~- 73 (211)
...+|+++|++|||||||+|.|++....... |....+.....+.+.+. ...+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 4579999999999999999999997642222 22222333344445441 13588999999432
Q ss_pred ------ccccccccccCccEEEEEEECCC
Q 028292 74 ------FRTLTSSYYRGAQGIIMVYDVTR 96 (211)
Q Consensus 74 ------~~~~~~~~~~~~d~~ilv~d~~~ 96 (211)
+...+...++++|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234445688999999999864
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.23 E-value=7e-12 Score=93.30 Aligned_cols=109 Identities=9% Similarity=-0.034 Sum_probs=74.7
Q ss_pred CCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHH---HHHHhhcCCCCCcEEEEEeC-CCCCCCcccCHHHHH
Q 028292 68 TAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWA---KEIDLYSTNQDCIKLLVGNK-VDKESERVVSKKEGI 143 (211)
Q Consensus 68 ~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~---~~~~~~~~~~~~p~ivv~nK-~D~~~~~~~~~~~~~ 143 (211)
.+|+..++..|+.|+.++|++|+|+|.+|.+.++ ....+. .++.......++|++|++|| .|+.. .....++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence 3567888999999999999999999999987654 222122 22322111368999999996 68743 33444433
Q ss_pred HHHH----HhCCcEEEeccCCCCCHHHHHHHHHHHHHcCC
Q 028292 144 DFAR----EYGCLFLECSAKTRVNVEQCFEELVLKILDTP 179 (211)
Q Consensus 144 ~~~~----~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~~~ 179 (211)
+... .....+..|||.+|+|+.+-++||.+.+..++
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 2221 13457899999999999999999999876543
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.12 E-value=9.5e-12 Score=97.47 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=86.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC-----CCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------ccc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD-----TFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TSS 80 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~ 80 (211)
.+|+++|.+|+|||||+|+|++. ......+.+|++.....+.+... +.++||||....... ...
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 57999999999999999999986 22334455566666666665543 789999994322211 111
Q ss_pred cc--cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEecc
Q 028292 81 YY--RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECSA 158 (211)
Q Consensus 81 ~~--~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (211)
++ ...+.++++++....-.+..+. .+.... ..+.|+++++||.|..+...... ....+.+..+..+.+.++
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~-----~l~~l~-~~~~~~~~v~~k~d~~~~~~~~~-~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLA-----RLDYIK-GGRRSFVCYMANELTVHRTKLEK-ADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTE-----EEEEEE-SSSEEEEEEECTTSCEEEEEGGG-HHHHHHHHBTTTBCSSCG
T ss_pred HhcccccCceEEEEcCCceEEECCEE-----EEEEcc-CCCceEEEEecCCcccccccHHH-HHHHHHHhcCCccCCCCc
Confidence 12 5678999999884321111100 011112 46789999999999865544332 233455566666666665
Q ss_pred CCCCCH
Q 028292 159 KTRVNV 164 (211)
Q Consensus 159 ~~~~~v 164 (211)
.+..++
T Consensus 313 ~~~~~~ 318 (369)
T 3ec1_A 313 RYAAEF 318 (369)
T ss_dssp GGTTTC
T ss_pred hhhhhc
Confidence 544433
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.01 E-value=4.9e-10 Score=88.63 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=72.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCCCC---CCCcceeeeEEEEEEECCe--EEEEEEEeCCCcccc-------------
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEE---LSPTIGVDFKIKHVALGGK--KMKLAIWDTAGQERF------------- 74 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~------------- 74 (211)
.++++|+|++|+|||||++.|++..+.. .....+.......+..... ...++++|++|....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 4679999999999999999999875421 1111222233333333222 246889999874211
Q ss_pred -cccc----cc---------cccCc--cE-EEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc
Q 028292 75 -RTLT----SS---------YYRGA--QG-IIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV 137 (211)
Q Consensus 75 -~~~~----~~---------~~~~~--d~-~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~ 137 (211)
...+ .. ....+ |+ ++++.|...+.+..++ ..+... ..++|+|+|.||+|.....++
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-----eilk~L--~~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-----VTMKKL--DSKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-----HHHHHT--CSCSEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-----HHHHHH--hhCCCEEEEEcchhccchHHH
Confidence 0001 00 11222 33 5556666554333332 222222 267999999999998544332
Q ss_pred CH--HHHHHHHHHhCCcEEEeccC
Q 028292 138 SK--KEGIDFAREYGCLFLECSAK 159 (211)
Q Consensus 138 ~~--~~~~~~~~~~~~~~~~~Sa~ 159 (211)
.. ..+.+.....|++++.+|..
T Consensus 195 ~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 195 TKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHHHHcCCcEEecCCC
Confidence 11 11222233456777777753
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.00 E-value=5.8e-10 Score=87.30 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=72.8
Q ss_pred CcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHH----HH
Q 028292 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGI----DF 145 (211)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~ 145 (211)
..+.|...+..+.+.+|++++|+|++++. ..|...+..+. .++|+++|+||+|+.+.. ...+... .+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~ 125 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFV--GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYS 125 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHS--SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHh--CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHH
Confidence 34678888888888999999999999863 12555555544 479999999999996543 2333333 33
Q ss_pred HHHhCC---cEEEeccCCCCCHHHHHHHHHHHH
Q 028292 146 AREYGC---LFLECSAKTRVNVEQCFEELVLKI 175 (211)
Q Consensus 146 ~~~~~~---~~~~~Sa~~~~~v~~~~~~i~~~~ 175 (211)
+...+. .++.+||++|.|++++++.|.+..
T Consensus 126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 566677 799999999999999999997765
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.99 E-value=2.7e-11 Score=94.86 Aligned_cols=135 Identities=15% Similarity=0.145 Sum_probs=78.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCC------CCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccccccc--------cc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTF------EELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQERFRTL--------TS 79 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~ 79 (211)
.+|+++|.+|+|||||+|+|++... .......+++.....+.+... +.++||||....... ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 5799999999999999999998632 224455666666666665543 789999995332211 11
Q ss_pred cc--ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHHHHhCCcEEEec
Q 028292 80 SY--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFAREYGCLFLECS 157 (211)
Q Consensus 80 ~~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (211)
.+ ....+..+++++......+..+. .+.... ..+.|+++++||.|..+.... ......+.+..+..+.+.+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~-----~~d~l~-~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA-----RFDYVS-GGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE-----EEEEEE-SSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred HhccccccCceEEEEcCCCEEEEcceE-----EEEEec-CCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence 11 35678888888874321111100 011112 467899999999998655433 2222334445565554444
Q ss_pred c
Q 028292 158 A 158 (211)
Q Consensus 158 a 158 (211)
+
T Consensus 311 ~ 311 (368)
T 3h2y_A 311 P 311 (368)
T ss_dssp H
T ss_pred h
Confidence 3
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.99 E-value=6.1e-10 Score=90.13 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=86.1
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHh------hCCC-----CCCCCcc-----------eeeeEEEEEE-------------
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFT------SDTF-----EELSPTI-----------GVDFKIKHVA------------- 55 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~------~~~~-----~~~~~~~-----------~~~~~~~~~~------------- 55 (211)
.....|+++|.+||||||++++|. +.+. +.+.+.. +..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998 3322 1111111 0111110000
Q ss_pred ECCeEEEEEEEeCCCcccccc-cccc---c--ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcE-EEEEeC
Q 028292 56 LGGKKMKLAIWDTAGQERFRT-LTSS---Y--YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIK-LLVGNK 128 (211)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~~~~-~~~~---~--~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK 128 (211)
.....+.+.|+||||...... .+.. . +..+|.+++|+|+......... ...+.. .+|+ .+|+||
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~-----~~~i~gvVlNK 249 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKD-----KVDVASVIVTK 249 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHH-----HHCCCCEEEEC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHh-----hcCceEEEEeC
Confidence 000335789999999653221 1110 1 1268999999999876432221 122221 2564 889999
Q ss_pred CCCCCCcccCHHHHHHHHHHhCCcE------------------EEeccCCCCC-HHHHHHHHHHH
Q 028292 129 VDKESERVVSKKEGIDFAREYGCLF------------------LECSAKTRVN-VEQCFEELVLK 174 (211)
Q Consensus 129 ~D~~~~~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-v~~~~~~i~~~ 174 (211)
.|....... +.......++|+ +.+|+..|.| +.++++++.+.
T Consensus 250 ~D~~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 250 LDGHAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TTSCCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CccccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 998533221 222334445443 3468889999 99988888766
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.96 E-value=3.5e-09 Score=83.71 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=87.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCC-Ccceee--eEEEEEEECCeEEEEEEEeCCCccccccc-----ccccc
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELS-PTIGVD--FKIKHVALGGKKMKLAIWDTAGQERFRTL-----TSSYY 82 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~-~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----~~~~~ 82 (211)
....|+|+|++|+|||||+|.+.+.... ... ...+.. ........ .....+++||++|-...... ....+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L 146 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKF 146 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence 3458999999999999999999984321 110 011111 11111111 11124788999984321111 11123
Q ss_pred cCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCC-------CCcccCHHHHH----HHH----H
Q 028292 83 RGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKE-------SERVVSKKEGI----DFA----R 147 (211)
Q Consensus 83 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~~----~~~----~ 147 (211)
...+..++ ++....+ .....+...+. ..++|+++|.||.|+. ........+.. ++. .
T Consensus 147 ~~~~~~~~-lS~G~~~---kqrv~la~aL~----~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~ 218 (413)
T 1tq4_A 147 YEYDFFII-ISATRFK---KNDIDIAKAIS----MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFR 218 (413)
T ss_dssp GGCSEEEE-EESSCCC---HHHHHHHHHHH----HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CccCCeEE-eCCCCcc---HHHHHHHHHHH----hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455554 7765321 11111222222 2468999999999962 22222333322 332 1
Q ss_pred HhC---CcEEEecc--CCCCCHHHHHHHHHHHHHcCCCcc
Q 028292 148 EYG---CLFLECSA--KTRVNVEQCFEELVLKILDTPSLL 182 (211)
Q Consensus 148 ~~~---~~~~~~Sa--~~~~~v~~~~~~i~~~~~~~~~~~ 182 (211)
+.+ ..++.+|+ ..+.|++++.+.+.+.+.+.+..+
T Consensus 219 ~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~ 258 (413)
T 1tq4_A 219 ENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN 258 (413)
T ss_dssp HTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred hcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence 222 36788999 666679999999998886655433
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.96 E-value=2.3e-09 Score=80.40 Aligned_cols=137 Identities=20% Similarity=0.166 Sum_probs=72.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCCCCCC-------Ccce-eeeEEEEEEECCeE--EEEEEEeCCCcccc-------c
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTFEELS-------PTIG-VDFKIKHVALGGKK--MKLAIWDTAGQERF-------R 75 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~--~~~~i~D~~g~~~~-------~ 75 (211)
.++++|+|++|+|||||++.|++....... +... .......+...... ..++++|++|.... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 489999999999999999999975431100 0000 01112222222222 36789999982110 0
Q ss_pred c---------------------cccccccCccEEEEEEECC-ChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCC
Q 028292 76 T---------------------LTSSYYRGAQGIIMVYDVT-RRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKES 133 (211)
Q Consensus 76 ~---------------------~~~~~~~~~d~~ilv~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 133 (211)
. .-+..+..+++.++++|.. .+-.-.+. . ++..+. .. +++++|.+|+|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~-~-~l~~L~----~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL-E-FMKHLS----KV-VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH-H-HHHHHH----TT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH-H-HHHHHH----hc-CcEEEEEeccccCC
Confidence 0 0011234568889999965 33222221 1 233332 23 89999999999854
Q ss_pred CcccC--HHHHHHHHHHhCCcEEEe
Q 028292 134 ERVVS--KKEGIDFAREYGCLFLEC 156 (211)
Q Consensus 134 ~~~~~--~~~~~~~~~~~~~~~~~~ 156 (211)
..+.. ..........+++.+|+.
T Consensus 155 ~~e~~~~k~~i~~~l~~~~i~i~~~ 179 (270)
T 3sop_A 155 LEEKSEFKQRVRKELEVNGIEFYPQ 179 (270)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHcCccccCC
Confidence 43321 223334455667776653
No 220
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.87 E-value=1.8e-09 Score=81.44 Aligned_cols=59 Identities=27% Similarity=0.394 Sum_probs=37.9
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCcc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQE 72 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~ 72 (211)
...++|+++|.+|||||||+|+|.+.......+.+|++.....+.+.. .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 456899999999999999999999887656666666665554444433 57899999953
No 221
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.86 E-value=1.6e-09 Score=84.80 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=71.7
Q ss_pred CcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH----H
Q 028292 70 GQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID----F 145 (211)
Q Consensus 70 g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~ 145 (211)
.++.|...+..++..++++++|+|++++.+. |...+..+. .++|+++|+||+|+.+.. ...+...+ +
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~s------~~~~l~~~l--~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~ 127 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNGS------FIPGLPRFA--ADNPILLVGNKADLLPRS-VKYPKLLRWMRRM 127 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGGG------CCSSHHHHC--TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCCc------hhhHHHHHh--CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHH
Confidence 3677888888888899999999999998631 333333333 478999999999996543 22333333 3
Q ss_pred HHHhCC---cEEEeccCCCCCHHHHHHHHHHHHH
Q 028292 146 AREYGC---LFLECSAKTRVNVEQCFEELVLKIL 176 (211)
Q Consensus 146 ~~~~~~---~~~~~Sa~~~~~v~~~~~~i~~~~~ 176 (211)
+...+. .++.+||++|.|++++++.+.+...
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 555666 6899999999999999999987653
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.81 E-value=6.2e-09 Score=78.53 Aligned_cols=102 Identities=13% Similarity=0.034 Sum_probs=69.2
Q ss_pred EeCCCcc-cccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHH
Q 028292 66 WDTAGQE-RFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGID 144 (211)
Q Consensus 66 ~D~~g~~-~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 144 (211)
-..||+. .........+.++|+++.|+|+.+|.+.... .+..+. .++|.++|+||+|+.+... .+...+
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~------~l~~~l--~~kp~ilVlNK~DL~~~~~--~~~~~~ 73 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP------MIEDIL--KNKPRIMLLNKADKADAAV--TQQWKE 73 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH------HHHHHC--SSSCEEEEEECGGGSCHHH--HHHHHH
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH------HHHHHH--CCCCEEEEEECcccCCHHH--HHHHHH
Confidence 3578875 3334556678999999999999999766421 111111 5799999999999965211 222334
Q ss_pred HHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHc
Q 028292 145 FAREYGCLFLECSAKTRVNVEQCFEELVLKILD 177 (211)
Q Consensus 145 ~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 177 (211)
+....+.+++.+||+++.|+++++..+.+.+.+
T Consensus 74 ~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 74 HFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 445567899999999999999999988887653
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.79 E-value=1.9e-09 Score=80.51 Aligned_cols=57 Identities=23% Similarity=0.356 Sum_probs=37.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER 73 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~ 73 (211)
++|+++|.+|+|||||+|+|.+.......++.|++.....+.+.. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 699999999999999999999877655666666655444343332 578999999543
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.56 E-value=9.4e-08 Score=76.00 Aligned_cols=140 Identities=18% Similarity=0.167 Sum_probs=77.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC------CC-----CCCCC-----------cceeeeEEEEEEEC------------
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD------TF-----EELSP-----------TIGVDFKIKHVALG------------ 57 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~------~~-----~~~~~-----------~~~~~~~~~~~~~~------------ 57 (211)
++..|+++|.+|+||||++..|... +. +.+.+ ..+..+.......+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999741 11 11111 01111110000000
Q ss_pred -CeEEEEEEEeCCCcccccccc----c--ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292 58 -GKKMKLAIWDTAGQERFRTLT----S--SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130 (211)
Q Consensus 58 -~~~~~~~i~D~~g~~~~~~~~----~--~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (211)
...+.+.|+||+|........ . ......|.+++|+|+.......... ..+.. .-.+..+|+||.|
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a----~~f~~----~~~i~gVIlTKlD 250 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA----LAFKE----ATPIGSIIVTKLD 250 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH----HHHHH----SCTTEEEEEECCS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH----HHHHh----hCCCeEEEEECCC
Confidence 012568899999954322111 0 1123568999999998764432222 22221 2234568999999
Q ss_pred CCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHH
Q 028292 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVE 165 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 165 (211)
..... -.+.......++|+.+++. |++++
T Consensus 251 ~~~~g----G~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 251 GSAKG----GGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp SCSSH----HHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred Ccccc----cHHHHHHHHHCCCEEEEEc--CCChH
Confidence 74332 2344455567888877775 55443
No 225
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.45 E-value=1.1e-07 Score=72.26 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=61.7
Q ss_pred ccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc--CHHHHHHHHHHhCCcE
Q 028292 76 TLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV--SKKEGIDFAREYGCLF 153 (211)
Q Consensus 76 ~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~ 153 (211)
.+.+..+.++|.+++|+|+.+|..-......++.... ..++|.++|+||+|+.+.... ..+.........+.++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 3444567899999999999987644333332433333 468899999999999665321 1233445555678899
Q ss_pred EEeccCCCCCHHHHHH
Q 028292 154 LECSAKTRVNVEQCFE 169 (211)
Q Consensus 154 ~~~Sa~~~~~v~~~~~ 169 (211)
+.+||.++.|+++++.
T Consensus 154 ~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIP 169 (307)
T ss_dssp EECCHHHHTTCTTTGG
T ss_pred EEEecCCCCCHHHHHh
Confidence 9999998888776543
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.38 E-value=2.7e-07 Score=76.00 Aligned_cols=63 Identities=19% Similarity=0.152 Sum_probs=39.8
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCcc-eeeeEEEEE--EE-CCeEEEEEEEeCCCccc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFE-ELSPTI-GVDFKIKHV--AL-GGKKMKLAIWDTAGQER 73 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~-~~~~~~~~~--~~-~~~~~~~~i~D~~g~~~ 73 (211)
.+.++|+|+|.+|+|||||+|+|++.... ....++ +.+...... .+ ......+.|+||||...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 46789999999999999999999987642 222211 222221111 11 12234688999999543
No 227
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.37 E-value=1.7e-07 Score=69.95 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=61.3
Q ss_pred CCCcccc-cccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccCHHHHHHHH
Q 028292 68 TAGQERF-RTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVSKKEGIDFA 146 (211)
Q Consensus 68 ~~g~~~~-~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 146 (211)
.||+... .......+.++|+++.|+|+.+|.+.... .+. + . ++|.++|+||+|+.+... .+...++.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~------~l~-l--l-~k~~iivlNK~DL~~~~~--~~~~~~~~ 71 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY------GVD-F--S-RKETIILLNKVDIADEKT--TKKWVEFF 71 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT------TSC-C--T-TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh------HHH-h--c-CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence 3665422 23455667899999999999998665321 111 1 1 799999999999965321 22233445
Q ss_pred HHhCCcEEEeccCCCCCHHHHHHHHHH
Q 028292 147 REYGCLFLECSAKTRVNVEQCFEELVL 173 (211)
Q Consensus 147 ~~~~~~~~~~Sa~~~~~v~~~~~~i~~ 173 (211)
...+.++ .+||+++.|+++++..+..
T Consensus 72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 72 KKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 5667888 9999999999998877644
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.30 E-value=7.3e-07 Score=71.06 Aligned_cols=132 Identities=19% Similarity=0.142 Sum_probs=72.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC------CC-----CCCCCc-----------ceeeeEEE--------EE----EECC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD------TF-----EELSPT-----------IGVDFKIK--------HV----ALGG 58 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~------~~-----~~~~~~-----------~~~~~~~~--------~~----~~~~ 58 (211)
...|+++|.+|+||||+++.|... +. +.+.+. .+..+... .+ .-..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 467999999999999999999762 11 111000 00000000 00 0001
Q ss_pred eEEEEEEEeCCCccccccc-c-----cccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCC-c-EEEEEeCCC
Q 028292 59 KKMKLAIWDTAGQERFRTL-T-----SSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDC-I-KLLVGNKVD 130 (211)
Q Consensus 59 ~~~~~~i~D~~g~~~~~~~-~-----~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D 130 (211)
..+.+.|+||||....... . ...+..+|.+++|+|+..... ... . ...+. ... | ..+|+||.|
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~-~---~~~~~--~~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI-Q---AKAFK--EAVGEIGSIIVTKLD 249 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH-H---HHHHH--TTSCSCEEEEEECSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH-H---HHHHh--hcccCCeEEEEeCCC
Confidence 3356899999996542211 1 111236899999999876542 111 1 12222 234 5 788999999
Q ss_pred CCCCcccCHHHHHHHHHHhCCcEEEec
Q 028292 131 KESERVVSKKEGIDFAREYGCLFLECS 157 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (211)
..... ..+.......+.++..++
T Consensus 250 ~~~~~----g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 250 GSAKG----GGALSAVAETKAPIKFIG 272 (432)
T ss_dssp SCSTT----HHHHHHHHHSSCCEEEEC
T ss_pred Cccch----HHHHHHHHHHCCCEEEee
Confidence 74321 223445666777776653
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.26 E-value=2.8e-07 Score=73.28 Aligned_cols=139 Identities=20% Similarity=0.209 Sum_probs=77.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC------CC-----CCCCC-----------cceeeeEEEEE-------------EE
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD------TF-----EELSP-----------TIGVDFKIKHV-------------AL 56 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~------~~-----~~~~~-----------~~~~~~~~~~~-------------~~ 56 (211)
....|+++|++|+||||++..|... +. +.+.+ ..+........ ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 4567889999999999999999731 11 11100 00111100000 00
Q ss_pred CCeEEEEEEEeCCCccc--ccc----cccc--cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292 57 GGKKMKLAIWDTAGQER--FRT----LTSS--YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (211)
Q Consensus 57 ~~~~~~~~i~D~~g~~~--~~~----~~~~--~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (211)
....+.+.|+||||... ... .... .....+.+++|+|+........... .+.. .-.+..+|+||
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~----~f~~----~~~~~gVIlTK 247 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLAS----RFHQ----ASPIGSVIITK 247 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHH----HHHH----HCSSEEEEEEC
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHH----HHhc----ccCCcEEEEec
Confidence 11235688999999544 111 1111 1124589999999987644333222 2221 11346789999
Q ss_pred CCCCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCH
Q 028292 129 VDKESERVVSKKEGIDFAREYGCLFLECSAKTRVNV 164 (211)
Q Consensus 129 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 164 (211)
.|.... .-.+.......+.|+.+++. |+++
T Consensus 248 lD~~a~----~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 248 MDGTAK----GGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp GGGCSC----HHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred cccccc----chHHHHHHHHHCCCEEEEEC--CCCh
Confidence 997432 23345556667899887775 6554
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.21 E-value=6.5e-07 Score=67.93 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=54.9
Q ss_pred EEEEEEEeCCCccc--ccc-ccc-----ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeCCC
Q 028292 60 KMKLAIWDTAGQER--FRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNKVD 130 (211)
Q Consensus 60 ~~~~~i~D~~g~~~--~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D 130 (211)
.+.+.|+||||... ... ... .....+|.+++|+|+...... .. ....+. ...| ..+|+||.|
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~-~~~~~~-----~~~~i~gvVlnk~D 250 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA---YD-LASKFN-----QASKIGTIIITKMD 250 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HH-HHHHHH-----HTCTTEEEEEECGG
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHH---HH-HHHHHH-----hhCCCCEEEEeCCC
Confidence 35689999999765 211 111 123468999999998754222 11 111121 1244 678899999
Q ss_pred CCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (211)
.... ...+.......++|+..++ .|+++++
T Consensus 251 ~~~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 251 GTAK----GGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp GCTT----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred CCcc----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 6432 2344556677788888776 5666544
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.10 E-value=3.1e-06 Score=70.48 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.|+|+|++|||||||++.+.+..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999864
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.01 E-value=1.6e-05 Score=61.72 Aligned_cols=85 Identities=20% Similarity=0.200 Sum_probs=55.2
Q ss_pred cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCccc-CHHHHHHHHHHhCCcEEEeccC
Q 028292 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVV-SKKEGIDFAREYGCLFLECSAK 159 (211)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~ 159 (211)
.+.++|.+++|... .|..-....+.++.... ..++|.++|+||+|+.+.... ..+.........|.+++.+||.
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~ 201 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSH 201 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecC
Confidence 46789999988665 56433333332433332 356788999999999654321 0122333445668899999999
Q ss_pred CCCCHHHHHHH
Q 028292 160 TRVNVEQCFEE 170 (211)
Q Consensus 160 ~~~~v~~~~~~ 170 (211)
++.|++++...
T Consensus 202 ~~~gl~~L~~~ 212 (358)
T 2rcn_A 202 TQDGLKPLEEA 212 (358)
T ss_dssp TTBTHHHHHHH
T ss_pred CCcCHHHHHHh
Confidence 99999987654
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.00 E-value=5.8e-06 Score=63.57 Aligned_cols=141 Identities=14% Similarity=0.210 Sum_probs=74.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCC-----------cceeeeEEEEEEEC------------
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDTF-----------EELSP-----------TIGVDFKIKHVALG------------ 57 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~~-----------~~~~~-----------~~~~~~~~~~~~~~------------ 57 (211)
..--|+++|++|+||||+++.|.+... +.+.. ..+..+........
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 456789999999999999999985311 00000 00000000000000
Q ss_pred -CeEEEEEEEeCCCcccccccccc------cccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCC
Q 028292 58 -GKKMKLAIWDTAGQERFRTLTSS------YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVD 130 (211)
Q Consensus 58 -~~~~~~~i~D~~g~~~~~~~~~~------~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 130 (211)
...+.+.++|++|.......... ..-..|-.++++|...... +.. ....+.. ..+ .-.+++||.|
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~---~~~-~~~~~~~---~~~-it~iilTKlD 279 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA---IVE-QARQFNE---AVK-IDGIILTKLD 279 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHH-HHHHHHH---HSC-CCEEEEECGG
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH---HHH-HHHHHHH---hcC-CCEEEEeCcC
Confidence 01133567899996432211100 1123678899999776532 222 1222221 112 2367889999
Q ss_pred CCCCcccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Q 028292 131 KESERVVSKKEGIDFAREYGCLFLECSAKTRVNVEQ 166 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 166 (211)
.... .-.+.......+.|+..++ +|+++++
T Consensus 280 ~~a~----~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 280 ADAR----GGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp GCSC----CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred Cccc----hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 6322 2234566777889888877 6665543
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.96 E-value=2.2e-07 Score=75.05 Aligned_cols=101 Identities=14% Similarity=0.070 Sum_probs=56.3
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcceeeeEEEEEEECCeEEEEEEEeCCCccc--ccccc--------cc
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDTFEELSPTIGVDFKIKHVALGGKKMKLAIWDTAGQER--FRTLT--------SS 80 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~~ 80 (211)
...+.|+++|.+|+||||+.++|.........++.+...........+......+||..|... ....+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999999999998643211112211100000000011112345788888632 22222 44
Q ss_pred cccCccEEEEEEECCChhcHHHHHHHHHHHHHh
Q 028292 81 YYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDL 113 (211)
Q Consensus 81 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~ 113 (211)
++...++.++|+|.++. +.+.... |...+..
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~-~~~~~~~ 147 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAM-IFNFGEQ 147 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHH-HHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHH-HHHHHHh
Confidence 55567888999999987 3444333 5555543
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.90 E-value=1.1e-05 Score=64.41 Aligned_cols=26 Identities=19% Similarity=0.103 Sum_probs=22.9
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.+..-|.|+|.+++|||+|+|.|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 46677899999999999999999864
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.76 E-value=0.00014 Score=58.00 Aligned_cols=132 Identities=20% Similarity=0.178 Sum_probs=68.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHh-------hCCC-----CCCCCc-----------ceeeeEEEE------------E-E
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFT-------SDTF-----EELSPT-----------IGVDFKIKH------------V-A 55 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~-------~~~~-----~~~~~~-----------~~~~~~~~~------------~-~ 55 (211)
....|+++|.+|+||||+...|. +.+. +.+.+. .+.++.... + .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 45678888999999999999987 2221 111111 010100000 0 0
Q ss_pred ECCeEEEEEEEeCCCcccccc-ccc-----ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCc-EEEEEeC
Q 028292 56 LGGKKMKLAIWDTAGQERFRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCI-KLLVGNK 128 (211)
Q Consensus 56 ~~~~~~~~~i~D~~g~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK 128 (211)
.....+.+.|+||||...... ... ..+...+.+++|+|+......... ...+.. ..+ .-+|+||
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~~----~~~f~~-----~l~i~gvVlnK 249 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAANT----AKAFNE-----ALPLTGVVLTK 249 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHHH----HHHHHH-----HSCCCCEEEEC
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHHH----HHHHhc-----cCCCeEEEEec
Confidence 001235689999999644321 111 113367889999998765432221 112221 223 2468999
Q ss_pred CCCCCCcccCHHHHHHHHHHhCCcEEEe
Q 028292 129 VDKESERVVSKKEGIDFAREYGCLFLEC 156 (211)
Q Consensus 129 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (211)
.|..... ..+.......+.|+..+
T Consensus 250 ~D~~~~~----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 250 VDGDARG----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp TTSSSCC----THHHHHHHHHCCCEEEE
T ss_pred CCCCccH----HHHHHHHHHHCCCeEEE
Confidence 9974322 13334555566664443
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.60 E-value=3.6e-05 Score=53.85 Aligned_cols=24 Identities=33% Similarity=0.688 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.+++++|++|+|||||++.+.+..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998753
No 238
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.48 E-value=4.2e-05 Score=58.15 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|||||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 78999999999999999998754
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.45 E-value=7.3e-05 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999864
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.42 E-value=8.2e-05 Score=52.92 Aligned_cols=21 Identities=48% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
.++|+|++|+|||||++.|.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999986
No 241
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.35 E-value=0.00011 Score=51.68 Aligned_cols=21 Identities=43% Similarity=0.705 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (211)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999864
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.32 E-value=0.00012 Score=51.98 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
-|+++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999874
No 243
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.32 E-value=0.00047 Score=52.37 Aligned_cols=22 Identities=45% Similarity=0.652 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57899999999999999999 54
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.30 E-value=0.00013 Score=51.22 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
-.|+|+|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999875
No 245
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.29 E-value=0.00061 Score=54.11 Aligned_cols=85 Identities=19% Similarity=0.199 Sum_probs=46.9
Q ss_pred EEEEEEeCCCcccccc-ccc-----ccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCC
Q 028292 61 MKLAIWDTAGQERFRT-LTS-----SYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESE 134 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~-~~~-----~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 134 (211)
+.+.|+||||...... ... ...-..|.+++|+|+..... ... ....+... .+ ..-+|+||.|....
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~---av~-~a~~f~~~---l~-i~GVIlTKlD~~~~ 252 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE---ALS-VARAFDEK---VG-VTGLVLTKLDGDAR 252 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTH---HHH-HHHHHHHH---TC-CCEEEEESGGGCSS
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHH---HHH-HHHHHHhc---CC-ceEEEEeCcCCccc
Confidence 5688999999643321 111 11225788899999875422 222 11222211 11 24578899996322
Q ss_pred cccCHHHHHHHHHHhCCcEEEec
Q 028292 135 RVVSKKEGIDFAREYGCLFLECS 157 (211)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~S 157 (211)
. ..+.......+.|+.++.
T Consensus 253 ~----g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 253 G----GAALSARHVTGKPIYFAG 271 (425)
T ss_dssp C----HHHHHHHHHHCCCEEEEE
T ss_pred H----HHHHHHHHHHCCCEEEEe
Confidence 2 234455667788877665
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.29 E-value=0.00014 Score=52.56 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
--++|+|++|||||||++.|.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 35789999999999999999874
No 247
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.28 E-value=0.00014 Score=52.01 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-++|+|++|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999998753
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.24 E-value=0.00017 Score=52.07 Aligned_cols=22 Identities=41% Similarity=0.709 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.++|+|++|+|||||++.|.+.
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999874
No 249
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.22 E-value=0.00019 Score=50.45 Aligned_cols=21 Identities=43% Similarity=0.705 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (211)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999854
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.22 E-value=0.00015 Score=50.19 Aligned_cols=20 Identities=45% Similarity=0.590 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028292 15 KLLLIGDSGVGKSTLLLSFT 34 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~ 34 (211)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 251
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.21 E-value=0.00021 Score=48.94 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999998754
No 252
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.20 E-value=0.00023 Score=50.52 Aligned_cols=25 Identities=40% Similarity=0.490 Sum_probs=21.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
..--|+|+|++|+|||||++.|...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3345889999999999999999864
No 253
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.20 E-value=0.0002 Score=51.23 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
--|+|+|++|||||||++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358899999999999999998753
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.16 E-value=0.00022 Score=50.97 Aligned_cols=26 Identities=31% Similarity=0.267 Sum_probs=22.4
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.....|+|+|++|+|||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999864
No 255
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.15 E-value=0.00036 Score=49.97 Aligned_cols=86 Identities=9% Similarity=0.045 Sum_probs=52.3
Q ss_pred EEEEEEEeCCCc-ccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcccC
Q 028292 60 KMKLAIWDTAGQ-ERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERVVS 138 (211)
Q Consensus 60 ~~~~~i~D~~g~-~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~ 138 (211)
.+.+.|+|+|+. .. ......+..+|.+|++...+ ..+...+.. +...+.... +.++.+|+|+.|..... .
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~-~~~~l~~~~---~~~~~vv~N~~~~~~~~--~ 137 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALML-TIETLQKLG---NNRFRILLTIIPPYPSK--D 137 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHH-HHHHHHHTC---SSSEEEEECSBCCTTSC--H
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHH-HHHHHHhcc---CCCEEEEEEecCCccch--H
Confidence 356889999985 32 23344566789999999875 344444444 444444322 56688999999863301 1
Q ss_pred HHHHHHHHHHhCCcEE
Q 028292 139 KKEGIDFAREYGCLFL 154 (211)
Q Consensus 139 ~~~~~~~~~~~~~~~~ 154 (211)
.++..+...+++.+++
T Consensus 138 ~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 138 GDEARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHHcCCchh
Confidence 3445555555666554
No 256
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.15 E-value=0.00023 Score=52.08 Aligned_cols=23 Identities=35% Similarity=0.405 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998744
No 257
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.11 E-value=0.00028 Score=49.53 Aligned_cols=21 Identities=33% Similarity=0.525 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
.++++|++|+|||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 258
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.10 E-value=0.00026 Score=51.33 Aligned_cols=23 Identities=43% Similarity=0.476 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 259
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.09 E-value=0.0003 Score=50.10 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=21.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
...-|+|+|++|||||||++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999999753
No 260
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.09 E-value=0.00035 Score=49.59 Aligned_cols=28 Identities=25% Similarity=0.425 Sum_probs=23.2
Q ss_pred cccCeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 8 QEFDYLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 8 ~~~~~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
......+.|+|.|.+||||||+.+.|..
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445667899999999999999999875
No 261
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.08 E-value=0.00031 Score=51.53 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999753
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.07 E-value=0.00033 Score=48.35 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
..|+|+|++|||||||.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999764
No 263
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.07 E-value=0.00032 Score=54.41 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++|+|++|||||||+|.|.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58899999999999999999754
No 264
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.06 E-value=0.00032 Score=49.82 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
..|+|+|++|||||||++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998754
No 265
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.05 E-value=0.00033 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998753
No 266
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.05 E-value=0.00032 Score=49.45 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999999864
No 267
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.04 E-value=0.00033 Score=52.07 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++|+|++|+|||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 268
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.04 E-value=0.00045 Score=47.88 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 269
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.03 E-value=0.00037 Score=49.46 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
-.|+|+|++|||||||++.|.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 270
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.03 E-value=0.00035 Score=52.32 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998744
No 271
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.02 E-value=0.00034 Score=48.73 Aligned_cols=24 Identities=29% Similarity=0.463 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-.++++|++|+|||||++.+.+.-
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999998643
No 272
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.02 E-value=0.00038 Score=47.89 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCcHHHHHHHH
Q 028292 14 FKLLLIGDSGVGKSTLLLSF 33 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l 33 (211)
+.|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 273
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.01 E-value=0.00041 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.600 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHh
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFT 34 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~ 34 (211)
...|+|+|++|||||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 274
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.01 E-value=0.00036 Score=51.73 Aligned_cols=23 Identities=43% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 275
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.01 E-value=0.0004 Score=50.80 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 276
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.01 E-value=0.00044 Score=49.38 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
....|+|+|++|||||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999863
No 277
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.00 E-value=0.00042 Score=49.70 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999954
No 278
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.99 E-value=0.00039 Score=51.67 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++|+|++|+|||||++.+.+-.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999998753
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.99 E-value=0.00046 Score=47.43 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
No 280
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.98 E-value=0.00038 Score=51.83 Aligned_cols=23 Identities=43% Similarity=0.559 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999753
No 281
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.98 E-value=0.00044 Score=49.61 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 282
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.98 E-value=0.00045 Score=50.72 Aligned_cols=23 Identities=30% Similarity=0.327 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 283
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.98 E-value=0.00046 Score=50.22 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|+.|+|||||++.+.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 284
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.98 E-value=0.00046 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
++|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999875
No 285
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.97 E-value=0.00041 Score=51.34 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 286
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.97 E-value=0.00041 Score=50.84 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 287
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.97 E-value=0.00046 Score=50.84 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 288
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.97 E-value=0.00038 Score=49.85 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.++++|+.|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 289
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.97 E-value=0.00043 Score=51.05 Aligned_cols=23 Identities=48% Similarity=0.635 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 290
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.96 E-value=0.00043 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.++|+|++|+|||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999999863
No 291
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.96 E-value=0.00059 Score=47.88 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.1
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
....|+|.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999975
No 292
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.96 E-value=0.00062 Score=47.51 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
....|++.|.+||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999974
No 293
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.95 E-value=0.00045 Score=48.07 Aligned_cols=25 Identities=44% Similarity=0.554 Sum_probs=21.4
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
.....|++.|.+|+||||+.+.|..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3456799999999999999999974
No 294
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.94 E-value=0.00047 Score=50.86 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.++++|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 295
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.94 E-value=0.00068 Score=48.09 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.6
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
.+...|+|.|.+||||||+.+.|..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999874
No 296
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.94 E-value=0.00064 Score=49.87 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.4
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
...++|+|.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999974
No 297
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.93 E-value=0.00064 Score=47.02 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
..|+++|++||||||+.+.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 298
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.93 E-value=0.00049 Score=51.28 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 299
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.93 E-value=0.00054 Score=47.61 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=20.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.-++++|++|+|||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45789999999999999999864
No 300
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.93 E-value=0.00053 Score=51.45 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++|+|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 301
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.92 E-value=0.00058 Score=48.41 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~ 35 (211)
.-.|+++|++||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999974
No 302
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.92 E-value=0.00053 Score=50.88 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.++|+|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999999974
No 303
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.91 E-value=0.00054 Score=51.97 Aligned_cols=22 Identities=36% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6889999999999999999864
No 304
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.89 E-value=0.00052 Score=50.72 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
No 305
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.89 E-value=0.00056 Score=48.54 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
..|+|+|.+||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 306
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.89 E-value=0.00057 Score=51.03 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++|+|++|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 307
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.89 E-value=0.00058 Score=48.49 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
++|+|+|.+||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 308
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.88 E-value=0.00061 Score=48.19 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999976
No 309
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.88 E-value=0.0005 Score=52.18 Aligned_cols=24 Identities=38% Similarity=0.394 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF 38 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~ 38 (211)
.++++|++|+|||||+|.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999997543
No 310
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.88 E-value=0.00054 Score=51.05 Aligned_cols=23 Identities=43% Similarity=0.547 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999998753
No 311
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.88 E-value=0.00062 Score=47.16 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
..|++.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999863
No 312
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.87 E-value=0.00062 Score=49.13 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 313
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.86 E-value=0.00074 Score=47.28 Aligned_cols=22 Identities=36% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
..|+|.|.+||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999975
No 314
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.85 E-value=0.00078 Score=47.91 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 315
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.85 E-value=0.00036 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=14.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh-hC
Q 028292 15 KLLLIGDSGVGKSTLLLSFT-SD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~-~~ 36 (211)
-|+|+|++|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58899999999999999999 54
No 316
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.85 E-value=0.00068 Score=50.39 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.++++|++|+|||||++.+.+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 317
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.84 E-value=0.00066 Score=48.68 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 318
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.84 E-value=0.00086 Score=51.12 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=23.3
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.....-|+|+|++|||||||++.|.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 445678999999999999999999874
No 319
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.84 E-value=0.00076 Score=49.69 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=21.8
Q ss_pred ccccCeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 7 QQEFDYLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 7 ~~~~~~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
+....+.+.|+|.|.+||||||+.+.|..
T Consensus 16 ~~~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 16 QPNGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred hccCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 34445678899999999999999998865
No 320
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.83 E-value=0.00065 Score=49.70 Aligned_cols=20 Identities=40% Similarity=0.735 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028292 15 KLLLIGDSGVGKSTLLLSFT 34 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~ 34 (211)
-++++|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47889999999999999988
No 321
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.83 E-value=0.001 Score=46.55 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.1
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.....|++.|.+|+||||+.+.|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34577999999999999999998753
No 322
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.83 E-value=0.00094 Score=47.55 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.0
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
......|+|+|.+|+|||||.+.|.+.
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 334568999999999999999999874
No 323
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.82 E-value=0.00071 Score=48.32 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=21.9
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
.+...|+|.|.+||||||+.+.|..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999975
No 324
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.82 E-value=0.00085 Score=47.52 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999864
No 325
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.82 E-value=0.0007 Score=48.02 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=21.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
..-.|+|+|++|+|||||.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998764
No 326
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.81 E-value=0.00067 Score=48.96 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
-++|+|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999873
No 327
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.81 E-value=0.00099 Score=47.99 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=19.5
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
+.--|+|+|+|||||+|...+|..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 333467789999999999999875
No 328
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.80 E-value=0.00089 Score=47.71 Aligned_cols=24 Identities=21% Similarity=0.012 Sum_probs=21.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
....|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999975
No 329
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.80 E-value=0.0008 Score=48.96 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.8
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
....+|+|+|.+||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999974
No 330
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.80 E-value=0.00077 Score=48.52 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~ 35 (211)
.+.|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 331
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.79 E-value=0.00053 Score=46.37 Aligned_cols=23 Identities=30% Similarity=0.596 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||+|++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998744
No 332
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.78 E-value=0.00086 Score=46.89 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
...+|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999764
No 333
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.78 E-value=0.00085 Score=46.92 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
..|+|.|.+||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999865
No 334
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.77 E-value=0.001 Score=46.68 Aligned_cols=23 Identities=22% Similarity=0.430 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~ 35 (211)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 335
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.77 E-value=0.00093 Score=50.33 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.8
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
....-|++.|++||||||+.+.|..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999975
No 336
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.76 E-value=0.00078 Score=50.38 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (211)
++++|++|+|||||++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 337
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.76 E-value=0.00083 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=20.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
+...|+|.|.+||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 338
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.75 E-value=0.001 Score=47.32 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~ 35 (211)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36799999999999999999975
No 339
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.75 E-value=0.00076 Score=52.32 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-++++|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999999854
No 340
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.75 E-value=0.00097 Score=46.50 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999964
No 341
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.74 E-value=0.00047 Score=47.79 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.|.|+|++|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 342
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.74 E-value=0.00078 Score=52.50 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.-+++|+|++|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998753
No 343
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.73 E-value=0.0011 Score=50.59 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=22.7
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
...++-|+|+|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 44678899999999999999999865
No 344
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.72 E-value=0.00088 Score=50.50 Aligned_cols=23 Identities=30% Similarity=0.601 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998753
No 345
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.72 E-value=0.00094 Score=51.87 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.|+|+|++|+|||||++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999863
No 346
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.71 E-value=0.00089 Score=51.89 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-++++|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999999754
No 347
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.70 E-value=0.0011 Score=48.57 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
....|.|+|+.|||||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999976
No 348
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.69 E-value=0.00097 Score=49.09 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (211)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999874
No 349
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.69 E-value=0.00081 Score=48.48 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~ 35 (211)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 350
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.69 E-value=0.0011 Score=45.39 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999975
No 351
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.69 E-value=0.0011 Score=45.97 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 352
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.68 E-value=0.00095 Score=51.84 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 46899999999999999999753
No 353
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.68 E-value=0.0022 Score=42.87 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
...|++.|++|+|||++.+.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 346999999999999999988754
No 354
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.68 E-value=0.00069 Score=51.45 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.++|+|++|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5889999999999999999874
No 355
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.67 E-value=0.0013 Score=46.49 Aligned_cols=27 Identities=26% Similarity=0.204 Sum_probs=22.9
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
..+...|+|.|.+||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 345678999999999999999999865
No 356
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.67 E-value=0.00099 Score=51.79 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 46899999999999999999754
No 357
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.67 E-value=0.001 Score=52.06 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 36899999999999999999754
No 358
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.67 E-value=0.0013 Score=47.15 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.4
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
+.+.|+|.|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999975
No 359
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.67 E-value=0.001 Score=46.02 Aligned_cols=21 Identities=38% Similarity=0.581 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.66 E-value=0.0013 Score=48.81 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~ 35 (211)
...|++.|.+||||||+.+.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 361
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.66 E-value=0.0011 Score=47.84 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
+.|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 362
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.66 E-value=0.001 Score=51.68 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-++++|++|+|||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 46899999999999999999754
No 363
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.65 E-value=0.0046 Score=49.32 Aligned_cols=62 Identities=23% Similarity=0.242 Sum_probs=38.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhh------------------CCCC----CCCCcceeeeEEEEE--E-ECCeEEEEEE
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTS------------------DTFE----ELSPTIGVDFKIKHV--A-LGGKKMKLAI 65 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~------------------~~~~----~~~~~~~~~~~~~~~--~-~~~~~~~~~i 65 (211)
.+..-|.|+|..++|||+|+|.|++ ..|. ....|.|.-.....+ . -++....+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 3566777999999999999996642 1121 111233332222111 1 1566788999
Q ss_pred EeCCCcc
Q 028292 66 WDTAGQE 72 (211)
Q Consensus 66 ~D~~g~~ 72 (211)
+||.|..
T Consensus 145 lDTEG~~ 151 (457)
T 4ido_A 145 MDTQGTF 151 (457)
T ss_dssp EEECCBT
T ss_pred EeccCCC
Confidence 9999944
No 364
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.64 E-value=0.0011 Score=47.67 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~ 35 (211)
.++|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 365
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.64 E-value=0.0012 Score=45.51 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
..|.++|.+|+|||||+.+|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999999863
No 366
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.63 E-value=0.0011 Score=51.82 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 46899999999999999999754
No 367
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.63 E-value=0.0011 Score=51.72 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-++++|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999998753
No 368
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.61 E-value=0.001 Score=46.77 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
+...|+|.|.+||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999864
No 369
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.61 E-value=0.0011 Score=50.24 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~ 35 (211)
.-.|+++|++|||||||++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34788999999999999999974
No 370
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.60 E-value=0.0012 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
..--++++|++||||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345788999999999999999975
No 371
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.60 E-value=0.001 Score=49.04 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=22.4
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
......|+++|++||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999999875
No 372
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.60 E-value=0.0011 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++|+|++|+|||||++.+.+.-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999753
No 373
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.59 E-value=0.0017 Score=48.98 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=22.3
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
......|+|.|++|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999998864
No 374
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.59 E-value=0.0016 Score=46.24 Aligned_cols=25 Identities=28% Similarity=0.171 Sum_probs=21.7
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
.....|+|+|.+|+|||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999875
No 375
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.58 E-value=0.0016 Score=49.51 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.4
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.....|+|+|++|||||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999873
No 376
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.58 E-value=0.0013 Score=51.43 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.|+|+|++|+|||||++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999863
No 377
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.58 E-value=0.00086 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=16.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~ 35 (211)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999974
No 378
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.56 E-value=0.0009 Score=51.76 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-++++|++|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999754
No 379
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.55 E-value=0.0012 Score=50.79 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-.++++|++|+|||||++.+.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 358999999999999999998743
No 380
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.55 E-value=0.0012 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.670 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.++|+|++|+|||||++.+.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999974
No 381
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.53 E-value=0.0013 Score=52.10 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.|+|+|++|+|||||++.+++.-
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999998743
No 382
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.51 E-value=0.0015 Score=48.84 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~ 36 (211)
|+++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999999874
No 383
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.51 E-value=0.0015 Score=48.17 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 384
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.49 E-value=0.0017 Score=45.48 Aligned_cols=21 Identities=24% Similarity=0.272 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 385
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.47 E-value=0.0013 Score=45.47 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.-.|+|.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999764
No 386
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.47 E-value=0.0015 Score=51.30 Aligned_cols=22 Identities=45% Similarity=0.656 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.++++|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999874
No 387
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.47 E-value=0.0015 Score=53.21 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.|+|+|++|||||||++.+++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999998743
No 388
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.47 E-value=0.00068 Score=48.42 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999975
No 389
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.46 E-value=0.0019 Score=50.29 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=21.6
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHh
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFT 34 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~ 34 (211)
.+.+||+|+|.++||||||++.+.
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 468999999999999999998874
No 390
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.44 E-value=0.0018 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~ 35 (211)
...|+|.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999975
No 391
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.42 E-value=0.002 Score=45.28 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
-|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999763
No 392
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.42 E-value=0.00091 Score=51.87 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999999754
No 393
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.41 E-value=0.0019 Score=44.85 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 457889999999999999975
No 394
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.41 E-value=0.0019 Score=46.56 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
-++++|++|+|||||++.+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999999854
No 395
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.41 E-value=0.0021 Score=45.41 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-.|++.|++|+|||+|++.+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999988643
No 396
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.40 E-value=0.0026 Score=44.40 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 397
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.40 E-value=0.002 Score=46.93 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
..+.|.+.|++|+||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
No 398
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.38 E-value=0.0022 Score=46.37 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.-.+++.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 399
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.37 E-value=0.002 Score=50.05 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.9
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
..--|+++|++||||||+++.|.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 345788999999999999999975
No 400
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.37 E-value=0.0022 Score=44.01 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 401
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.36 E-value=0.0023 Score=47.14 Aligned_cols=21 Identities=33% Similarity=0.408 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFT 34 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~ 34 (211)
..|.|+|++||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 402
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.36 E-value=0.0021 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
-.|++.|++|+|||+|++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 403
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.35 E-value=0.0024 Score=43.71 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=19.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
-+|+|.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999864
No 404
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.0018 Score=52.10 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++|+|+.|+|||||++.|.+..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999998753
No 405
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.33 E-value=0.0023 Score=46.45 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.4
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
....-|+|.|..|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999999875
No 406
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.33 E-value=0.0029 Score=43.87 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~ 35 (211)
...|++.|.+|+||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999976
No 407
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.33 E-value=0.0017 Score=48.05 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=22.3
Q ss_pred ccCeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 9 EFDYLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 9 ~~~~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
...+...|+|.|..||||||+++.|...
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 3446678999999999999999998754
No 408
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.32 E-value=0.0021 Score=51.83 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~ 35 (211)
.--|+|+|.+|||||||++.|.+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 44688999999999999999975
No 409
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.32 E-value=0.0032 Score=45.70 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=22.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
...-|++.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 5567999999999999999999864
No 410
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.27 E-value=0.0026 Score=44.23 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999999865
No 411
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.27 E-value=0.0026 Score=49.21 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
++.++|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 412
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.26 E-value=0.0025 Score=48.66 Aligned_cols=24 Identities=38% Similarity=0.438 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
--++|+|+.|+|||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 356788999999999999999753
No 413
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.24 E-value=0.015 Score=45.32 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=18.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~ 35 (211)
.+ .+|+|++|+|||||++.++.
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHHH
Confidence 35 45899999999999999873
No 414
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.24 E-value=0.0031 Score=47.27 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.0
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
...+.|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999973
No 415
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.22 E-value=0.0026 Score=47.97 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-++|+|++|+|||||+..+.+..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47889999999999999998643
No 416
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.22 E-value=0.0025 Score=46.90 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
-.|+++|++|+||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999965
No 417
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.17 E-value=0.004 Score=44.47 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=20.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
....|++.|.+|+||||+.+.|..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999875
No 418
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.15 E-value=0.0033 Score=42.04 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=22.2
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
....|++.|++|+|||++.+.+....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 34579999999999999999998754
No 419
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.14 E-value=0.0032 Score=45.70 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4788999999999999999874
No 420
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.14 E-value=0.0043 Score=46.79 Aligned_cols=27 Identities=22% Similarity=0.112 Sum_probs=21.9
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
..+.-+++.|+||+|||+|.+.+....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344567888999999999999998643
No 421
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.13 E-value=0.0027 Score=45.13 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.+++.|+||+|||+++.++...
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888763
No 422
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.12 E-value=0.0033 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999754
No 423
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.11 E-value=0.0035 Score=44.80 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.10 E-value=0.0039 Score=42.06 Aligned_cols=20 Identities=45% Similarity=0.652 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 028292 16 LLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~ 35 (211)
.+|+|+.|+|||||+.++..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999863
No 425
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.08 E-value=0.0037 Score=46.68 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=21.5
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
..-.+++.|++|+|||+|++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3456999999999999999999764
No 426
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.08 E-value=0.0034 Score=49.11 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
-.|+++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3688999999999999999986
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.07 E-value=0.0042 Score=46.80 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 428
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.06 E-value=0.0033 Score=51.59 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-++++|++|+|||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999999754
No 429
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.06 E-value=0.0038 Score=46.92 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.-.|++.|++|+|||+|++.+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 430
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.06 E-value=0.0037 Score=45.02 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.++|.|++|+|||+|++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999753
No 431
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.05 E-value=0.0036 Score=50.52 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
.++|+|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 432
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.04 E-value=0.0042 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.-.|++.|++|+|||+|++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999763
No 433
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.04 E-value=0.0039 Score=44.30 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.+++.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999764
No 434
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.03 E-value=0.0044 Score=46.80 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.0
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
....|++.|++|+|||+|++.+...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999877653
No 435
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.0052 Score=44.36 Aligned_cols=27 Identities=11% Similarity=-0.028 Sum_probs=21.3
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.+.+=|++-|.++.||++|++++.+..
T Consensus 27 ~nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 27 QNKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CCceEEEecCcccccHHHHHHHHhccc
Confidence 344555555999999999999999864
No 436
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.98 E-value=0.004 Score=47.12 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.-.|++.|++|+|||+|++.+.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999999864
No 437
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.96 E-value=0.0043 Score=49.52 Aligned_cols=23 Identities=43% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999999864
No 438
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.004 Score=51.80 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57899999999999999999754
No 439
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.91 E-value=0.0044 Score=47.29 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-.+++.|++|+|||+|++.+.+.-
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999998643
No 440
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.91 E-value=0.0061 Score=42.97 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.-+.|++.|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999753
No 441
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.87 E-value=0.0071 Score=44.90 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.6
Q ss_pred CeeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 11 DYLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 11 ~~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.....+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 35568999999999999999999864
No 442
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.86 E-value=0.0047 Score=51.21 Aligned_cols=23 Identities=39% Similarity=0.446 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68899999999999999998743
No 443
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.84 E-value=0.005 Score=51.22 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57899999999999999998754
No 444
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.80 E-value=0.0061 Score=44.30 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=21.9
Q ss_pred cCeeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 10 FDYLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 10 ~~~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
......|+|+|.+|+||||+.+.|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999999875
No 445
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.79 E-value=0.0053 Score=45.82 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999986
No 446
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.77 E-value=0.0061 Score=46.06 Aligned_cols=133 Identities=14% Similarity=0.141 Sum_probs=68.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhCCC------------CCCCCcc-----------eeeeEEEE----E--EE-CCeEEE
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSDTF------------EELSPTI-----------GVDFKIKH----V--AL-GGKKMK 62 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~~~------------~~~~~~~-----------~~~~~~~~----~--~~-~~~~~~ 62 (211)
.-.|+++|++|+||||++..|...-. +.+.+.. +....... + .+ .-..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 34788999999999999999863211 1111100 00000000 0 00 002356
Q ss_pred EEEEeCCCcccccc--cc--ccccc--CccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeCCCCCCCcc
Q 028292 63 LAIWDTAGQERFRT--LT--SSYYR--GAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNKVDKESERV 136 (211)
Q Consensus 63 ~~i~D~~g~~~~~~--~~--~~~~~--~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~ 136 (211)
+.|+||+|...... +. ...+. ..+..++|+|.+.. ...+.. + ...+. .-+. .-+|+||.|.....
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~-~---~~~~~-~l~~-~giVltk~D~~~~~- 255 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKH-I---VKRFS-SVPV-NQYIFTKIDETTSL- 255 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHH-H---TTTTS-SSCC-CEEEEECTTTCSCC-
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHH-H---HHHHh-cCCC-CEEEEeCCCcccch-
Confidence 89999999654321 11 11222 35778899988754 222222 2 22221 1222 34667999974322
Q ss_pred cCHHHHHHHHHHhCCcEEEec
Q 028292 137 VSKKEGIDFAREYGCLFLECS 157 (211)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~S 157 (211)
..+.......++++..+.
T Consensus 256 ---g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 256 ---GSVFNILAESKIGVGFMT 273 (296)
T ss_dssp ---HHHHHHHHTCSCCCSEEC
T ss_pred ---hHHHHHHHHHCcCEEEEE
Confidence 245566677788776554
No 447
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.76 E-value=0.006 Score=50.06 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++|+|+.|+|||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 448
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.76 E-value=0.0054 Score=50.83 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999998743
No 449
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.75 E-value=0.0053 Score=50.33 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++|+|+.|+|||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
No 450
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.74 E-value=0.0084 Score=47.57 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.3
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
...-|+++|.+||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456889999999999999999753
No 451
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.74 E-value=0.0061 Score=50.71 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++|+|+.|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 452
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.73 E-value=0.0066 Score=46.12 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.-.+++.|++|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998764
No 453
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.72 E-value=0.0057 Score=47.45 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.-.++|.|++|+|||+|++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999864
No 454
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.72 E-value=0.0054 Score=47.18 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
++++.|++|+||||+++.+.+.-
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998753
No 455
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.72 E-value=0.007 Score=43.88 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhh
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~ 35 (211)
-+++.|+|++||||||+...|..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 47899999999999999999864
No 456
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.71 E-value=0.0063 Score=45.85 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.-.+++.|++|+|||+|++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999763
No 457
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.69 E-value=0.0068 Score=47.18 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++|.|++|+|||+|++.+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998654
No 458
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.0062 Score=48.38 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
--|++.|+||+|||+|++++.+.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999864
No 459
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.68 E-value=0.0068 Score=46.27 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.-.|++.|++|+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999764
No 460
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.68 E-value=0.0062 Score=46.55 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.-.|++.|++|+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999999864
No 461
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.66 E-value=0.0052 Score=47.37 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
++++.|++|+|||||++.+.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998873
No 462
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.0066 Score=48.30 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.+--|++.|+||+|||+|++++.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3457999999999999999999874
No 463
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.65 E-value=0.0049 Score=51.23 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 57899999999999999998743
No 464
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.63 E-value=0.0094 Score=44.98 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-.+++.|++|+|||++++.+....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999998643
No 465
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.62 E-value=0.0073 Score=42.72 Aligned_cols=24 Identities=42% Similarity=0.650 Sum_probs=20.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.-|+++|++|+|||+|...|...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998643
No 466
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.61 E-value=0.0073 Score=45.84 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=46.7
Q ss_pred EEEEEEeCCCcccccccc-------ccc-----ccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcCCCCCcEEEEEeC
Q 028292 61 MKLAIWDTAGQERFRTLT-------SSY-----YRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYSTNQDCIKLLVGNK 128 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~-------~~~-----~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 128 (211)
+.+.|+|+||........ ... -...+.+++|+|..... +.+.. .. .+.. ..++ .-+|+||
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~-~~~~---~~~i-~gvVlTk 258 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AK-IFKE---AVNV-TGIILTK 258 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HH-HHHH---HSCC-CEEEEEC
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HH-HHHh---cCCC-CEEEEeC
Confidence 458899999953222110 111 12468889999987432 11111 21 1211 1222 3466899
Q ss_pred CCCCCCcccCHHHHHHHHHHhCCcEEEecc
Q 028292 129 VDKESERVVSKKEGIDFAREYGCLFLECSA 158 (211)
Q Consensus 129 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (211)
.|....- -.+.......++|+.++..
T Consensus 259 ~D~~~~g----G~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 259 LDGTAKG----GITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GGGCSCT----THHHHHHHHHCCCEEEEEC
T ss_pred CCCccch----HHHHHHHHHHCCCEEEEeC
Confidence 9963222 2356677788888877654
No 467
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.59 E-value=0.0056 Score=50.92 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999998743
No 468
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.57 E-value=0.0092 Score=46.11 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=20.6
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhh
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~ 35 (211)
...+|+++|++|+||||+.+.|..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999987764
No 469
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.0074 Score=48.08 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.+--|++.|+||+|||+|++++.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999999864
No 470
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.56 E-value=0.0048 Score=51.08 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
.++++|++|+|||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 67899999999999999888743
No 471
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.0073 Score=50.24 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSDTF 38 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~~ 38 (211)
++++|+.|+|||||++.+.+...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 78999999999999999997543
No 472
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.53 E-value=0.0093 Score=42.13 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
.|.|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999965
No 473
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.51 E-value=0.096 Score=39.73 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028292 16 LLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~~~ 37 (211)
+++-|++|+|||++++.+....
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHT
T ss_pred EEeeCcCCCCHHHHHHHHHHHh
Confidence 4555669999999999997643
No 474
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.50 E-value=0.0082 Score=43.60 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028292 15 KLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~ 35 (211)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999877764
No 475
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.49 E-value=0.0095 Score=45.48 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
..|+|+|++|||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
No 476
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.48 E-value=0.01 Score=43.23 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
...|++-|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 357899999999999999999754
No 477
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.0084 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
+--|++.|+||+|||+|++++.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 446999999999999999999864
No 478
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.45 E-value=0.0098 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDTF 38 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~~ 38 (211)
.++++|+.|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 578999999999999999997654
No 479
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.44 E-value=0.009 Score=46.27 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
-.+++.|++|+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999754
No 480
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.44 E-value=0.0081 Score=48.40 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
-+++++|++|+|||+|++.+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 481
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.43 E-value=0.035 Score=39.02 Aligned_cols=86 Identities=13% Similarity=0.011 Sum_probs=54.3
Q ss_pred EEEEEEeCCCcccccccccccccCccEEEEEEECCChhcHHHHHHHHHHHHHhhcC-CCCCcEEEEEeCCCCCCCcccCH
Q 028292 61 MKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLADIWAKEIDLYST-NQDCIKLLVGNKVDKESERVVSK 139 (211)
Q Consensus 61 ~~~~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~ 139 (211)
+.+.|+|+|+.. .......+..+|.+|++...+... ..+.. +...+..... ..+.++.+|+|+.|.... ..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~ 147 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAG-SVVTVLEAQAYSRKVEARFLITRKIEMAT---ML 147 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHH-HHHHHHTTSCGGGCCEEEEEECSBCTTEE---EE
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHH-HHHHHHHHHHhCCCCcEEEEEeccCCCch---HH
Confidence 678999999864 334445566789999999886554 44444 4455543321 345677999999984221 23
Q ss_pred HHHHHHHHHhCCcEE
Q 028292 140 KEGIDFAREYGCLFL 154 (211)
Q Consensus 140 ~~~~~~~~~~~~~~~ 154 (211)
.+..+....++.+++
T Consensus 148 ~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 148 NVLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHcCCcee
Confidence 445555666666554
No 482
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.43 E-value=0.0038 Score=46.19 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.|++.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999999763
No 483
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.43 E-value=0.0087 Score=45.98 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
++++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 484
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.41 E-value=0.0065 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999999874
No 485
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.39 E-value=0.01 Score=42.17 Aligned_cols=20 Identities=45% Similarity=0.652 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 028292 16 LLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 16 i~v~G~~~~GKstli~~l~~ 35 (211)
.+|+|+.|+|||||+..+..
T Consensus 26 ~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 35669999999999998853
No 486
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.0072 Score=46.08 Aligned_cols=26 Identities=8% Similarity=-0.026 Sum_probs=22.5
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
..-.++|.|+||+|||++++.++..-
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45688999999999999999998643
No 487
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.38 E-value=0.008 Score=46.68 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=21.5
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
..-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999864
No 488
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.35 E-value=0.0096 Score=46.16 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
-.|++.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999864
No 489
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.35 E-value=0.0093 Score=46.14 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~~ 37 (211)
-+.|+|++|+|||||+..+....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998753
No 490
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.34 E-value=0.011 Score=45.44 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
-|+|+|++|||||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999854
No 491
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.33 E-value=0.011 Score=44.88 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
-|+|+|++|||||+|...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5789999999999999999754
No 492
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.33 E-value=0.0094 Score=47.64 Aligned_cols=24 Identities=33% Similarity=0.502 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
.-.+++.|++|+|||+|++.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999864
No 493
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.33 E-value=0.01 Score=45.62 Aligned_cols=22 Identities=23% Similarity=0.594 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHhh
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTS 35 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~ 35 (211)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999999875
No 494
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.28 E-value=0.011 Score=45.74 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.7
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
..-.|++.|++|+|||+|++.+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999764
No 495
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.26 E-value=0.01 Score=48.19 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.|+++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999864
No 496
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.26 E-value=0.011 Score=48.61 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~ 36 (211)
-.++++|++|+|||||++.+.+.
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999764
No 497
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.26 E-value=0.0075 Score=49.58 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=21.8
Q ss_pred eeEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 12 YLFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 12 ~~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
....|+|+|.+|||||||++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4467999999999999999999864
No 498
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.25 E-value=0.012 Score=43.42 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHhhCC
Q 028292 14 FKLLLIGDSGVGKSTLLLSFTSDT 37 (211)
Q Consensus 14 ~~i~v~G~~~~GKstli~~l~~~~ 37 (211)
..|++.|++|+|||+|++.+....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 579999999999999999998654
No 499
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.24 E-value=0.01 Score=46.28 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHhhC
Q 028292 13 LFKLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 13 ~~~i~v~G~~~~GKstli~~l~~~ 36 (211)
...|++.|++|+|||+|.+.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 500
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.23 E-value=0.0073 Score=46.19 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028292 15 KLLLIGDSGVGKSTLLLSFTSD 36 (211)
Q Consensus 15 ~i~v~G~~~~GKstli~~l~~~ 36 (211)
.+++.|++|+|||+|++.+...
T Consensus 48 ~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 7999999999999999999763
Done!