BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028294
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 298 bits (762), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 138/168 (82%), Positives = 153/168 (91%)
Query: 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
+Y YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM+TIDG+ IKLQIWD
Sbjct: 6 AYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWD 65
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
TAGQESFRSITRSYYRGAAGALLVYDITRR+TFNHL++WLEDARQH+N NM IML+GNK
Sbjct: 66 TAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKS 125
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
DL RR V KEEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I +
Sbjct: 126 DLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYE 173
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 296 bits (759), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 140/170 (82%), Positives = 154/170 (90%)
Query: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV IDG+ IKLQIWDTAG
Sbjct: 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAG 79
Query: 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
QESFRSITRSYYRGAAGALLVYDITRRETFNHL+SWLEDARQH++ NM IML+GNK DL
Sbjct: 80 QESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE 139
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174
RR V +EEGE FA+E+GL+F+E SA+TA NVEEAFI TA +I + IQ+G
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG 189
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 247 bits (630), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 116/171 (67%), Positives = 139/171 (81%)
Query: 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
+Y Y+FKYIIIGD GVGKSCLL QFT+K+F TIGVEFG R++ + G+ IKLQIWD
Sbjct: 26 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 85
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
TAGQ FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR NPN I+L+GNK
Sbjct: 86 TAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 145
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
DL +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QNIQ
Sbjct: 146 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQ 196
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 246 bits (628), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 115/169 (68%), Positives = 138/169 (81%)
Query: 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
+Y Y+FKYIIIGD GVGKSCLL QFT+K+F TIGVEFG R++ + G+ IKLQIWD
Sbjct: 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWD 70
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
TAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHLSSWL DAR NPN I+L+GNK
Sbjct: 71 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKA 130
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
DL +R V+ EE +QFA+ENGLLFLEASA+T +NVE+AF++ A KI QN
Sbjct: 131 DLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQN 179
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 223 bits (568), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 105/176 (59%), Positives = 137/176 (77%)
Query: 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
+YD+LFK+++IG+ G GKSCLL QF +K+F+ + TIGVEFG++++ + G+ +KLQIWD
Sbjct: 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 65
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
TAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR A+ N+ I+L GNK
Sbjct: 66 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 125
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177
DL R V+ E +FA+EN L+FLE SA T +NVEEAF++ A KIL I+ G LD
Sbjct: 126 DLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 181
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 221 bits (563), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/174 (60%), Positives = 132/174 (75%)
Query: 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
D+LFK+++IG G GKSCLL QF + +F+ + TIGVEFG+R+V + G+ +KLQIWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
GQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR A+PN+ ++L GNK DL
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDL 142
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177
R V+ E +FA+EN L+FLE SA T +NVEEAF+K A IL I G LD
Sbjct: 143 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 196
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 213 bits (542), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 100/168 (59%), Positives = 132/168 (78%)
Query: 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
+YD+LFK+++IG+ G GKSCLL QF +K+F+ + TIGVEFG++++ + G+ +KLQIWD
Sbjct: 7 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 66
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
TAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR A+ N+ I+L GNK
Sbjct: 67 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 126
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
DL R V+ E +FA+EN L+FLE SA T ++VEEAF++ A KIL
Sbjct: 127 DLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 174
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 211 bits (536), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 131/168 (77%)
Query: 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
+YD+LFK+++IG+ G GKSCLL QF +K+F+ + TIGVEFG++++ + G+ +KLQIWD
Sbjct: 4 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 63
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
TAG E FRS+TRSYYRGAAGALLVYDIT RET+N L++WL DAR A+ N+ I+L GNK
Sbjct: 64 TAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKK 123
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
DL R V+ E +FA+EN L+FLE SA T ++VEEAF++ A KIL
Sbjct: 124 DLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKILN 171
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 197 bits (502), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 91/184 (49%), Positives = 132/184 (71%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R + +DG+ IKLQIWDT
Sbjct: 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVGNKCD
Sbjct: 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
L ++ V ++FA G+ FLE SA+ A NVE++F+ AA+I + + GA ++
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEK 192
Query: 183 SGIK 186
S +K
Sbjct: 193 SNVK 196
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 194 bits (492), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 123/165 (74%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R + +DG+ IKLQIWDT
Sbjct: 3 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVGNKCD
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
L ++ V ++FA G+ FLE SA+ A NVE++F+ AA+I
Sbjct: 123 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 193 bits (491), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 123/165 (74%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R + +DG+ IKLQIWDT
Sbjct: 22 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 81
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVGNKCD
Sbjct: 82 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 141
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
L ++ V ++FA G+ FLE SA+ A NVE++F+ AA+I
Sbjct: 142 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 192 bits (488), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 123/165 (74%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IGD+GVGK+CLLL+F D + + TIGV+F R + +DG+ IKLQIWDT
Sbjct: 13 YDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVGNKCD
Sbjct: 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 132
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
L ++ V ++FA G+ FLE SA+ A NVE++F+ AA+I
Sbjct: 133 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 192 bits (488), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 122/165 (73%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R + +DG+ IKLQIWDT
Sbjct: 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 89
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVGNKCD
Sbjct: 90 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 149
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
L ++ V ++FA G+ FLE SA+ A NVE++F AA+I
Sbjct: 150 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 192 bits (487), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 84/170 (49%), Positives = 126/170 (74%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R ++++ + +KLQIWDT
Sbjct: 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDT 65
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T R++F+++ W+++ ++A N++ +LVGNKCD
Sbjct: 66 AGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCD 125
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
L +R V+ +EG + A +G+ F+E SA+ A NVE+AF A +I + +Q
Sbjct: 126 LVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKKRVQ 175
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 191 bits (486), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 91/159 (57%), Positives = 114/159 (71%)
Query: 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
SYDYLFK ++IGD+GVGKS LL +FT F TIGVEF R + +DG+ IK QIWD
Sbjct: 16 SYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 75
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
TAGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA+ N+ IMLVGNK
Sbjct: 76 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 135
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
DL H RAV +E FA++NGL F+E SA + NVE AF
Sbjct: 136 DLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 174
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 190 bits (483), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 136/208 (65%), Gaps = 7/208 (3%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IG++GVGKSCLLL+F+D + + TIGV+F + V +DG+ +KLQIWDT
Sbjct: 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE FR+IT SYYRG+ G ++VYD+T +E+FN + WL++ ++A + +LVGNKCD
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
L +R V + ++FA N + FLE SA + NVE+AF+ A +I +++ + L+ +
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 184
Query: 183 SGIKVGYGRGQGPSGARDGTVSQRGGCC 210
+G + +++ GGCC
Sbjct: 185 K-------EDKGNVNLKGQSLTNTGGCC 205
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 190 bits (482), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 122/165 (73%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YD LFK ++IGD+GVGKSCLLL+F D + + TIGV+F R + +DG+ IKLQIWDT
Sbjct: 3 YDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVGNKCD
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCD 122
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
L ++ V ++FA G+ FLE SA+ A NVE++F+ AA+I
Sbjct: 123 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 190 bits (482), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 94/183 (51%), Positives = 123/183 (67%), Gaps = 2/183 (1%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IGD+GVGKS LL +FT F TIGVEF R + +DG+ IK QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE +R IT +YYRGA GALLVYDI + T+ ++ WL++ R HA+ N+ IMLVGNK D
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 121
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL--DAVN 180
L H RAV +E FA++N L F+E SA + NVEEAF +I + + + + A +
Sbjct: 122 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 181
Query: 181 DQS 183
D+S
Sbjct: 182 DES 184
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 190 bits (482), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 86/165 (52%), Positives = 122/165 (73%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R + +DG+ IKLQIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVG KCD
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCD 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
L ++ V ++FA G+ FLE SA+ A NVE++F+ AA+I
Sbjct: 125 LTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 189 bits (481), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 90/158 (56%), Positives = 113/158 (71%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IGD+GVGKS LL +FT F TIGVEF R + +DG+ IK QIWDT
Sbjct: 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA+ N+ IMLVGNK D
Sbjct: 86 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
L H RAV +E FA++NGL F+E SA + NVE AF
Sbjct: 146 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/202 (46%), Positives = 130/202 (64%), Gaps = 5/202 (2%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YD LFK ++IGD+GVGKS LL +FT F TIGVEF R + I+G+ IK QIWDT
Sbjct: 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDT 69
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE +R+IT +YYRGA GAL+VYDI++ ++ + + WL + R++A+ N+++ L+GNK D
Sbjct: 70 AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
LAH RAV EE + FA+EN LLF E SA ++NV++AF + I Q + + +D
Sbjct: 130 LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDL---- 185
Query: 183 SGIKVGYGRGQGPSGARDGTVS 204
G G G S T+S
Sbjct: 186 -GDSSANGNANGASAPNGPTIS 206
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 136/208 (65%), Gaps = 6/208 (2%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IG++GVGKSCLLL+F+D + + TIGV+F + V +DG+ +KLQIWDT
Sbjct: 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE FR+IT SYYRG+ G ++VYD+T +E+FN + WL++ ++A + +LVGNKCD
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
L +R V + ++FA N + FLE SA + NVE+AF+ A +I +++ + L+ +
Sbjct: 125 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK 184
Query: 183 SGIKVGYGRGQGPSGARDGTVSQRGGCC 210
K G +G S G GGCC
Sbjct: 185 KEDK-GNVNLKGQSLTNTG-----GGCC 206
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 187 bits (475), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/158 (56%), Positives = 112/158 (70%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IGD+GVGKS LL +FT F TIGVEF R + +DG+ IK QIWDT
Sbjct: 5 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 64
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AG E +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA+ N+ IMLVGNK D
Sbjct: 65 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
L H RAV +E FA++NGL F+E SA + NVE AF
Sbjct: 125 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 162
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 187 bits (475), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 85/165 (51%), Positives = 121/165 (73%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R + +DG+ IKLQIWDT
Sbjct: 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E++ ++ WL++ ++A+ N++ +LVGNK D
Sbjct: 66 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 125
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
L ++ V ++FA G+ FLE SA+ A NVE+AF+ AA+I
Sbjct: 126 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 187 bits (475), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 85/165 (51%), Positives = 121/165 (73%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IGD+GVGKSCLLL+F D + + TIGV+F R + +DG+ IKLQIWDT
Sbjct: 6 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE FR+IT SYYRGA G ++VYD+T +E++ ++ WL++ ++A+ N++ +LVGNK D
Sbjct: 66 AGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSD 125
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
L ++ V ++FA G+ FLE SA+ A NVE+AF+ AA+I
Sbjct: 126 LTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 187 bits (474), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 89/158 (56%), Positives = 112/158 (70%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IGD+GVGKS LL +FT F TIGVEF R + +DG+ IK QIWDT
Sbjct: 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 85
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AG E +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA+ N+ IMLVGNK D
Sbjct: 86 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 145
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
L H RAV +E FA++NGL F+E SA + NVE AF
Sbjct: 146 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 187 bits (474), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 120/166 (72%)
Query: 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
+YDYLFK ++IGD+GVGK+C+L +F++ F TIG++F R + +DG+ IKLQIWD
Sbjct: 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 63
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
TAGQE FR+IT +YYRGA G +LVYDIT ++F+++ +W+ + +HA+ ++ M++GNKC
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 123
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
D+ +R VSKE GE+ A + G+ F+E SA+ NVE AF A I
Sbjct: 124 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/158 (55%), Positives = 111/158 (70%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IGD+GVGKS LL +FT F TIGVEF R + +DG+ IK QIWDT
Sbjct: 8 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 67
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AG E +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA+ N+ I LVGNK D
Sbjct: 68 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 127
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
L H RAV +E FA++NGL F+E SA + NVE AF
Sbjct: 128 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 184 bits (468), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 88/158 (55%), Positives = 111/158 (70%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IGD+GVGKS LL +FT F TIGVEF R + +DG+ IK QIWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AG E +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R HA+ N+ I LVGNK D
Sbjct: 62 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSD 121
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
L H RAV +E FA++NGL F+E SA + NVE AF
Sbjct: 122 LRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 159
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 183 bits (464), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 81/164 (49%), Positives = 118/164 (71%)
Query: 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
DYLFK ++IGD+GVGK+C+L +F++ F TIG++F R + +DG+ IKLQIWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
GQE FR+IT +YYRGA G +LVYDIT ++F+++ +W+ + +HA+ ++ M++GNKCD+
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDV 123
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
+R VSKE GE+ A + G+ F+E SA+ NVE AF A I
Sbjct: 124 NDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 182 bits (463), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 119/165 (72%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IG++GVGKSCLLL+F+D + + TIGV+F + V +DG+ +KLQIWDT
Sbjct: 18 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 77
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE FR+IT SYYRG+ G ++VYD+T +E+FN + WL++ ++A + +LVGNKCD
Sbjct: 78 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 137
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
L +R V + ++FA N + FLE SA + NVE+AF+ A +I
Sbjct: 138 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 182 bits (462), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 82/160 (51%), Positives = 118/160 (73%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K ++IGD+GVGKSCLLL+F D + + TIGV+F R + +DG+ IKLQIWDTAGQE
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127
FR+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVGNKCDL ++
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 128 AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
V ++FA G+ FLE SA+ A NVE++F+ AA+I
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 181 bits (460), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 84/175 (48%), Positives = 120/175 (68%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YDYLFK ++IGD+GVGKS LL +FT F TIGVEF R + ++ + IK QIWDT
Sbjct: 7 YDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDT 66
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AG E +R+IT +YYRGA GAL+VYDI++ ++ + + WL + R++A+ N+++ L+GNK D
Sbjct: 67 AGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSD 126
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177
LAH RAV +E + FA EN +LF E SA + NV++AF + I Q + + +D
Sbjct: 127 LAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVD 181
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 180 bits (457), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 82/168 (48%), Positives = 117/168 (69%), Gaps = 2/168 (1%)
Query: 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
SYD + K ++IGD+GVGKSCLL++F + +F P TIG++F + V I+G+ +KLQ+WD
Sbjct: 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWD 75
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
TAGQE FR+IT +YYRGA G +LVYD+T TF ++ W + +HAN ++LVGNK
Sbjct: 76 TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 135
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
D+ R V+ ++GE AKE G+ F+E+SA+ NV E F T AK++Q
Sbjct: 136 DM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 181
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 176 bits (447), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 115/166 (69%), Gaps = 2/166 (1%)
Query: 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
D + K ++IGD+GVGKSCLL++F + +F P TIG++F + V I+G+ +KLQIWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
GQE FR+IT +YYRGA G +LVYDIT TF ++ W + +HAN ++LVGNK D+
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 120
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
R V+ ++GE AKE G+ F+E+SA+ NV E F T AK++Q
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 164
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 176 bits (446), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 85/181 (46%), Positives = 121/181 (66%), Gaps = 2/181 (1%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YD+LFK ++IG+ GVGK+CL+ +FT F P TIGV+F + V I+G +KLQIWDT
Sbjct: 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 82
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE FRSIT+SYYR A +L YDIT E+F L WL + Q+A+ + +LVGNK D
Sbjct: 83 AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 142
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
LA RR VS++ E+F++ + +LE SA+ + NVE+ F+ A +++ ++ L VN+
Sbjct: 143 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTL--VNNV 200
Query: 183 S 183
S
Sbjct: 201 S 201
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 83/159 (52%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWD 61
YDYLFK ++IGD+GVGKS LL +FT F TIGVEF + + + + + IK QIWD
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
TAGQE +R+IT +YYRGA GALLVYDIT++ +F ++ WL++ R +A+ N+ I+LVGNK
Sbjct: 64 TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKS 123
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
DL H R ++ + Q+AK+ L F+E SA A NVE AF
Sbjct: 124 DLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAF 162
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 174 bits (442), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 114/166 (68%), Gaps = 2/166 (1%)
Query: 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
D + K ++IGD+GVGKSCLL++F + +F P TIG++F + V I+G+ +KLQIWDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
GQE FR+IT +YYRGA G +LVYDIT TF ++ W + +HAN ++LVGNK D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
R V+ ++GE AKE G+ F+E+SA+ NV E F T AK++Q
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 164
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 173 bits (438), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 114/164 (69%), Gaps = 2/164 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
+ K ++IGD+GVGKSCLL++F + +F P TIG++F + V I+G+ +KLQ+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
E FR+IT +YYRGA G +LVYD+T TF ++ W + +HAN ++LVGNK D+
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
R V+ ++GE AKE G+ F+E+SA+ NV E F T AK++Q
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 168
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 173 bits (438), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 114/166 (68%), Gaps = 2/166 (1%)
Query: 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
D + K ++IGD+GVGKSCLL++F + +F P TIG++F + V I+G+ +KLQ+WDTA
Sbjct: 1 DSIXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTA 60
Query: 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
GQE FR+IT +YYRGA G +LVYD+T TF ++ W + +HAN ++LVGNK D
Sbjct: 61 GQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD- 119
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
R V+ ++GE AKE G+ F+E+SA+ NV E F T AK++Q
Sbjct: 120 XETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF-TLAKLIQ 164
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 170 bits (431), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWD 61
YD FK +++GD+GVGK+CLL++F D F T+G++F +++ +DG +KLQ+WD
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
TAGQE FRS+T +YYR A LL+YD+T + +F+++ +WL + ++A ++++ML+GNK
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 126
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
D AH R V +E+GE+ AKE GL F+E SA+T NV+ AF A ++
Sbjct: 127 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 110/171 (64%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
Y+++FK ++IG++GVGK+ LL +FT F TIGVEF R V + +K QIWDT
Sbjct: 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 81
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AG E +R+IT +YYRGA GALLV+D+T+ +T+ + WL++ HA + +MLVGNK D
Sbjct: 82 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 141
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
L+ R V EE FA+ NGLLFLE SA + NVE AF +I + +
Sbjct: 142 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 192
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 167 bits (422), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 110/171 (64%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
Y+++FK ++IG++GVGK+ LL +FT F TIGVEF R V + +K QIWDT
Sbjct: 7 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 66
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AG E +R+IT +YYRGA GALLV+D+T+ +T+ + WL++ HA + +MLVGNK D
Sbjct: 67 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 126
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
L+ R V EE FA+ NGLLFLE SA + NVE AF +I + +
Sbjct: 127 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK 177
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 166 bits (419), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 114/167 (68%), Gaps = 1/167 (0%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YD+LFK +++GD VGK+C++ +F F TIGV+F + + I G+ +KLQIWDT
Sbjct: 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 85
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE FR+IT+SYYR A GA+L YDIT+R +F + W+ED R++A N+ +L+GNK D
Sbjct: 86 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145
Query: 123 LAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 168
L+ R VS E + A+ +L +E SA+ + NVEEAF++ A +++
Sbjct: 146 LSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 87/183 (47%), Positives = 117/183 (63%), Gaps = 4/183 (2%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +IIG++GVGKS LLL+FTD F P TIGV+F + +++DG KL IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAH 125
FR++T SYYRGA G +LVYD+TRR+TF L +WL + + N + LVGNK D
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-KE 134
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGI 185
R V + EG +FA+++ LF+EASA+T V+ AF + KI+Q G ++ N SG
Sbjct: 135 NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQT--PGLWESENQNSGP 192
Query: 186 KVG 188
G
Sbjct: 193 SSG 195
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 160 bits (406), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + V +D +K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
RAV +E + +A +N LLF+E SA+T+ NV E F+ A K+ +N
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 160 bits (405), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + V +D +K +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
RAV +E + +A +N LLF+E SA+T+ NV E F+ A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 160 bits (404), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + V +D +K +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
RAV +E + +A +N LLF+E SA+T+ NV E F+ A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 159 bits (403), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + V +D +K +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
RAV +E + +A +N LLF+E SA+T+ NV E F+ A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 159 bits (403), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + V +D +K +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
RAV +E + +A +N LLF+E SA+T+ NV E F+ A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
YD+LFK +IIGD+GVGKS LLL+F D F + TIGV+F R V I+G +KLQIWDT
Sbjct: 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDT 65
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AGQE FR+IT +YYRG G ++VYD+T E+F ++ WL + Q+ + ++ +LVGNK D
Sbjct: 66 AGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKND 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
R+ V E+ +FA + G+ E SA+ NVEE F
Sbjct: 125 DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 103/159 (64%)
Query: 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
++DY+FK +IIG++ VGK+ L ++ D F P T+G++F + + + + IKLQIWD
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
TAGQE +R+IT +YYRGA G +L+YDIT E+FN + W + ++ N ++LVGNKC
Sbjct: 61 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKC 120
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
D+ R VS E G Q A G F EASA+ NV++ F
Sbjct: 121 DMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + V +D +K +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
RAV +E + +A +N LLF+E SA+T+ NV E F+ A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 72/161 (44%), Positives = 107/161 (66%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + V +D +K +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
+ S+ YYRGA A++VYDIT +TF +W+++ ++ A+PN+ I L GNK DLA +
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
RAV +E + +A +N LLF+E SA+TA NV E F+ A K+
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 110/164 (67%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + V +D +K +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
RAV +E + +A +N LLF+E SA+T+ NV E F+ A K+ +N
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 108/161 (67%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + V +D +K +IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
+ S+ YYRGA A++VYDIT +ETF +W+++ ++ A+P++ I L GNK DLA++
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
R V EE + +A +N LLF+E SA+TA NV + F+ A K+
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 108/164 (65%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + V +D +K +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
RAV +E + +A +N LLF E SA+T+ NV E F A K+ +N
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 158 bits (399), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 76/169 (44%), Positives = 114/169 (67%), Gaps = 1/169 (0%)
Query: 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
D+ + IIIG GVGK+ L+ +FTD F T+GV+F + V + G+ I+LQIWDTA
Sbjct: 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
GQE F SIT +YYR A G +LVYDIT++ETF+ L W++ ++A+ + ++LVGNK D
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDC 143
Query: 124 AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
R +++++GE+FA++ G+ F EASA+ NV+E F+K IL+ +
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 106/161 (65%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TI F + V +D +K +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
+ S+ YYRGA A++VYDIT +TF +W+++ ++ A+PN+ I L GNK DLA +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
RAV +E + +A +N LLF+E SA+TA NV E F+ A K+
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 156 bits (394), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 106/161 (65%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + V +D +K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
+ S+ YYRGA A++VYDIT +TF +W+++ ++ A+PN+ I L GNK DLA +
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
RAV +E + +A +N LLF+E SA+TA NV E F+ A K+
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 107/161 (66%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++G++ VGKS L+L+F +F + TIG F + V +D +K +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
+ S+ YYRGA A++VYDIT E+F +W+++ ++ A+PN+ I L GNK DLA++
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
RAV +E + +A +N LLF+E SA+T+ NV E F+ A K+
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 69/159 (43%), Positives = 104/159 (65%)
Query: 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWD 61
++DY+FK +IIG++ VGK+ L ++ D F P T+G++F + V + +KLQIWD
Sbjct: 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWD 78
Query: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
TAGQE +R+IT +YYRGA G +L+YDIT E+FN + W + ++ N ++LVGNKC
Sbjct: 79 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC 138
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
D+ R V E+G+ A++ G F EASA+ +V +AF
Sbjct: 139 DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 78/193 (40%), Positives = 110/193 (56%), Gaps = 6/193 (3%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT 62
+DY FK +IIG++ VGK+ L ++ D F P T+G++F + + + + IKLQIWDT
Sbjct: 5 FDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 64
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122
AG E +R+IT +YYRGA G +L YDIT E+FN + W + ++ N ++LVGNKCD
Sbjct: 65 AGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 124
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQ 182
R VS E G Q A G F EASA+ NV++ F + I + E +LD +
Sbjct: 125 XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSE-SLDTAD-- 181
Query: 183 SGIKVGYGRGQGP 195
G QGP
Sbjct: 182 ---PAVTGAKQGP 191
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 153 bits (386), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 104/160 (65%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +++GD G GKS L+L+F +F + TIG F ++ + ++ +K +IWDTAGQE
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127
+ S+ YYRGAA A++V+D+T + +F W+++ + NPNM + L GNK DL R
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 128 AVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
V+ E+ + +A+ENGL F+E SA+TA NV+E F + A ++
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 105/170 (61%)
Query: 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
DY+FK ++IG++ VGK+ L ++ D F P T+G++F + V + IKLQIWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123
GQE +R+IT +YYRGA G LL+YDI +E+F + W + ++ N ++LVGNKCDL
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL 139
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
R V E+G + A + G F EASA+ NV++ F + I + + E
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNE 189
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 108/163 (66%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK + +G+ VGK+ L+ +F F + TIG++F ++ + ++ R ++LQ+WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
FRS+ SY R + A++VYDIT +F S W++D R ++ IMLVGNK DLA +
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
R ++ EEGEQ AKE ++F+E SA+T NV++ F + A+ +L+
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 106/161 (65%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK + +G+ VGK+ L+ +F F + TIG++F ++ + ++ R I+LQ+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
FRS+ SY R +A A++VYDIT +F + W++D R ++ IMLVGNK DLA +
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
R VS EEGE+ AKE ++F+E SA+ NV++ F + AA +
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 106/161 (65%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK + +G+ VGK+ L+ +F F + TIG++F ++ + ++ R ++LQ+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
FRS+ SY R + A++VYDIT +F+ S W++D R ++ IMLVGNK DL+ +
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
R VS EEGE+ AKE ++F+E SA+ NV++ F + AA +
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 68/161 (42%), Positives = 105/161 (65%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK + +G+ VGK+ L+ +F F + TIG++F ++ + ++ R ++LQ+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
FRS+ SY R + A++VYDIT +F + W++D R ++ IMLVGNK DLA +
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
R VS EEGE+ AKE ++F+E SA+ NV++ F + AA +
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 146 bits (369), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 105/161 (65%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK + +G+ VGK+ L+ +F F + TIG++F ++ + ++ R I+LQ+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
FRS+ SY R +A A++VYDIT +F + W++D R ++ IMLVGNK DLA +
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
R VS EEGE+ AKE ++F+E SA+ NV++ F + AA +
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 174
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 146 bits (369), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 64/115 (55%), Positives = 90/115 (78%)
Query: 10 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69
++IGD+GVGKSCLLL+F D + + TIGV+F R + +DG+ IKLQIWDTAGQE FR
Sbjct: 2 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61
Query: 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
+IT SYYRGA G ++VYD+T +E+FN++ WL++ ++A+ N++ +LVGNKCDL
Sbjct: 62 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 116
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 100/161 (62%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K ++GDTGVGKS ++ +F + F P + TIG F + V K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
FR++ YYRG+A A++VYDIT+ ETF+ L +W+ + RQH P++ + + GNKCDL
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
R V + + + +A +F+E SA+ A N+ E FI+ + +I
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 104/161 (64%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK + +G+ VGK+ L+ +F F + TIG++F ++ + ++ R ++LQ+WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
FRS+ SY R + A++VYDIT +F + W++D R ++ IMLVGNK DLA +
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
R VS EEGE+ AKE ++F+E SA+ NV++ F + AA +
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 99/161 (61%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K ++GDTGVGKS ++ +F + F P + TIG F + V K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
FR++ YYRG+A A++VYDIT+ ETF+ L +W+ + RQH P++ + + GNKCDL
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
R V + + + +A +F+E SA+ A N+ E FI+ + +I
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 104/161 (64%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK + +G+ VGK+ L+ +F F + TIG++F ++ + ++ R ++LQ+WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
FRS+ SY R + A++VYDIT +F + W++D R ++ IMLVGNK DLA +
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
R VS EEGE+ AKE ++F+E SA+ NV++ F + AA +
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 177
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 140 bits (352), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 101/163 (61%), Gaps = 3/163 (1%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +++G+ VGKS ++L+F F + TIG F + VTI+ +K +IWDTAGQE
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
F S+ YYR A AL+VYD+T+ ++F W+++ + A+ ++ I LVGNK D
Sbjct: 65 FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 126 -RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
R V++EEGE+ A+E GLLF E SA+T +NV + F+ KI
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 102/161 (63%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+K + +G+ VGK+ ++ +F F + TIG++F ++ + +D P++LQ+WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
FRS+ SY R +A A++VYDIT R++F + + W++D ++ I LVGNK DL
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
R V+ EEG Q A+E F E SA+ N++ F KTA+K+
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 135 bits (339), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 114/184 (61%), Gaps = 15/184 (8%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR--------- 53
YDYL K + +GD+GVGK+ L ++TD +F P T+G++F + V + +
Sbjct: 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 81
Query: 54 -PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
+ LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++ +W+ + +A N
Sbjct: 82 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 141
Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
P+ I+L+GNK DL +R V++ + + A + G+ + E SA T QNVE+A I++
Sbjct: 142 PD--IVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199
Query: 170 NIQE 173
+++
Sbjct: 200 RMEQ 203
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 100/167 (59%), Gaps = 5/167 (2%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
+FK I+IGD+ VGK+CL +F RF + TIGV+F R V IDG IK+Q+WDTAGQ
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 79
Query: 66 ESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKCDL 123
E FR S+ + YYR + VYD+T +F+ L +W+E+ +QH N + +LVGNKCDL
Sbjct: 80 ERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 139
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQN---VEEAFIKTAAKI 167
V + ++FA + + E SA+ + VE F+ A K+
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 108/180 (60%), Gaps = 6/180 (3%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
L K II+GD+GVGK+ L+ Q+ +K+F + TIG +F + V +D R + +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVGNKC 121
E F+S+ ++YRGA +LV+D+T TF L SW ++ A+P N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
DL +R+ +K +N + + E SA+ A NVE+AF A L+ QE ++ N+
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVELYNE 185
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 133 bits (335), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/180 (38%), Positives = 108/180 (60%), Gaps = 6/180 (3%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
L K II+GD+GVGK+ L+ Q+ +K+F + TIG +F + V +D R + +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVGNKC 121
E F+S+ ++YRGA +LV+D+T TF L SW ++ A+P N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
DL +R+ +K +N + + E SA+ A NVE+AF A L+ QE ++ N+
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVELYNE 185
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 109/170 (64%), Gaps = 15/170 (8%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--------GRP 54
YDYL K + +GD+GVGK+ L ++TD +F P T+G++F + V D G+
Sbjct: 8 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 55 IK--LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
K LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++ +W+ + +A N
Sbjct: 68 FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 127
Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159
P+ I+L+GNK DL +R V++ + + A++ G+ + E SA T QNVE++
Sbjct: 128 PD--IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 109/170 (64%), Gaps = 15/170 (8%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--------GRP 54
YDYL K + +GD+GVGK+ L ++TD +F P T+G++F + V D G+
Sbjct: 8 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 55 IK--LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
K LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++ +W+ + +A N
Sbjct: 68 FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 127
Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159
P+ I+L+GNK DL +R V++ + + A++ G+ + E SA T QNVE++
Sbjct: 128 PD--IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 132 bits (332), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 107/180 (59%), Gaps = 6/180 (3%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
L K II+GD+GVGK+ L+ Q+ +K+F + TIG +F + V +D R + +QIWDTAGQ
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 67
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVGNKC 121
E F+S+ ++YRGA +LV+D+T TF L SW ++ A+P N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
D +R+ +K +N + + E SA+ A NVE+AF A L+ QE ++ N+
Sbjct: 128 DFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVELYNE 185
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 131 bits (330), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 111/186 (59%), Gaps = 12/186 (6%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID----------G 52
YDYL K++ +GD+GVGK+ +L Q+TD +F T+G++F + V G
Sbjct: 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRG 67
Query: 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPN 111
+ I LQ+WDTAG E FRS+T +++R A G LL++D+T ++F ++ +W+ + HA + N
Sbjct: 68 QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN 127
Query: 112 MSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171
I+L GNK DL +RAV +EE + A++ G+ + E SA N+ A I+ ++
Sbjct: 128 PDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHA-IEMLLDLIMKR 186
Query: 172 QEGALD 177
E ++D
Sbjct: 187 MERSVD 192
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 97/167 (58%), Gaps = 5/167 (2%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
+FK I+IGD+ VGK+CL +F RF + TIGV+F R V IDG IK+Q+WDTAGQ
Sbjct: 29 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 88
Query: 66 ESFR-SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKCDL 123
E FR S+ + YYR + VYD T +F+ L +W+E+ +QH N + +LVGNKCDL
Sbjct: 89 ERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDL 148
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQN---VEEAFIKTAAKI 167
V + ++FA + E SA+ + VE F A K+
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 94/154 (61%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K ++GDTGVGKS ++ +F F TIG F + V K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F S+ YYRG+A A++VYDIT++++F L W+++ ++H N+ + + GNKCDL+
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
R V ++ +++A+ G + +E SA+ A N+EE F
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELF 177
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 69/180 (38%), Positives = 107/180 (59%), Gaps = 6/180 (3%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
L K II+GD+GVGK+ L+ Q+ +K+F + TIG +F + V +D R + +QIWDTAG
Sbjct: 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGL 67
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP----NMSIMLVGNKC 121
E F+S+ ++YRGA +LV+D+T TF L SW ++ A+P N +++GNK
Sbjct: 68 ERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVND 181
DL +R+ +K +N + + E SA+ A NVE+AF A L+ QE ++ N+
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK--QETEVELYNE 185
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 15/170 (8%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--------GRP 54
YDYL K + +GD+GVGK+ L ++TD +F P T+G++F + V D G+
Sbjct: 8 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 55 IK--LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
K LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++ +W + +A N
Sbjct: 68 FKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCEN 127
Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159
P+ I+L+GNK DL +R V++ + + A++ G+ + E SA T QNVE++
Sbjct: 128 PD--IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 130 bits (326), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 107/170 (62%), Gaps = 15/170 (8%)
Query: 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--------GRP 54
YDYL K + +GD+GVGK+ L ++TD +F P T+G++F + V D G+
Sbjct: 8 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 55 IK--LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA---N 109
K LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++ +W + +A N
Sbjct: 68 FKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCEN 127
Query: 110 PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159
P+ I+L+GNK DL +R V++ + + A++ G+ + E SA T QNVE++
Sbjct: 128 PD--IVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 126 bits (317), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 99/165 (60%)
Query: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
Y FK +++G+ VGK+ L+L++ + +F H T+G F + + I G+ + L IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
QE F ++ YYR + GA+LVYDIT ++F + +W+++ R+ + + +VGNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
R VS +E E +A+ G SA+ + +EE F+ ++++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 6/167 (3%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+K ++ GD VGKS L++ F+ T+GV+F + + +DG LQ+WDTAGQE
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH- 125
FRSI +SY+R A G LL+YD+T ++F ++ W++ A+ + IMLVGNK D+
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 126 -----RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
++ V GE+ A G LF E SA+ N+ EA + A ++
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 98/165 (59%)
Query: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
Y FK +++G+ VGK+ L+L++ + +F H T+ F + + I G+ + L IWDTAG
Sbjct: 19 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 78
Query: 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
QE F ++ YYR + GA+LVYDIT ++F + +W+++ R+ + + +VGNK DL
Sbjct: 79 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 138
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
R VS +E E +A+ G SA+ + +EE F+ ++++
Sbjct: 139 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 98/165 (59%)
Query: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64
Y FK +++G+ VGK+ L+L++ + +F H T+ F + + I G+ + L IWDTAG
Sbjct: 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAG 64
Query: 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
QE F ++ YYR + GA+LVYDIT ++F + +W+++ R+ + + +VGNK DL
Sbjct: 65 QERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE 124
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
R VS +E E +A+ G SA+ + +EE F+ ++++
Sbjct: 125 KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 107/175 (61%), Gaps = 9/175 (5%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPI-KLQIWDTAG 64
+ K II+GD+GVGK+ L+ ++ + ++ + TIG +F + VT+DG + +Q+WDTAG
Sbjct: 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 67
Query: 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN----MSIMLVGNK 120
QE F+S+ ++YRGA +LVYD+T +F ++ SW ++ HAN N +++GNK
Sbjct: 68 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 121 CDLAH-RRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
D ++ VS++ ++ AK G LFL SA+ A NV+ AF + A LQ Q
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSALQQNQ 181
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 103/168 (61%), Gaps = 6/168 (3%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
LFK I++GD GVGKS L+ ++ +F TIGVEF + + +DG + +QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKC 121
E FRS+ +YRG+ LL + + ++F +LS+W ++ +A+ + +++GNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 122 DLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
D++ R+ VS EE + + ++NG + E SA+ A NV AF + ++L
Sbjct: 129 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 102/168 (60%), Gaps = 6/168 (3%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
LFK I++GD GVGKS L+ ++ +F TIGVEF + + +DG + +QIWDTAGQ
Sbjct: 11 LFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 70
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKC 121
E FRS+ +YRG+ LL + + ++F +LS+W ++ +A+ + +++GNK
Sbjct: 71 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKT 130
Query: 122 DLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
D+ R+ VS EE + + K+NG + E SA+ + NV AF + +IL
Sbjct: 131 DIKERQ-VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 103/168 (61%), Gaps = 6/168 (3%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
LFK I++GD GVGKS L+ ++ +F TIGVEF + + +DG + +QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKC 121
E FRS+ +YRG+ LL + + ++F +LS+W ++ +A+ + +++GNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 122 DLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
D++ R+ VS EE + + ++NG + E SA+ A NV AF + ++L
Sbjct: 127 DISERQ-VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 116 bits (290), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/168 (38%), Positives = 99/168 (58%), Gaps = 6/168 (3%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
L K I++GD GVGKS L+ ++ +F TIGVEF R + +DGR + LQIWDTAGQ
Sbjct: 7 LLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQ 66
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKC 121
E F+S+ +YRGA LL + + R++F +L +W ++ +A+ + +++GNK
Sbjct: 67 ERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKV 126
Query: 122 DLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
D R V+ EE + + ENG +LE SA+ NV AF + ++L
Sbjct: 127 D-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVL 173
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 1/164 (0%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++G+ VGKS ++ ++ F + TIGV+F R + ++ ++L +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F +IT++YYRGA +LV+ T RE+F +SSW E ++ LV NK DL
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDD 124
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
+ EE E AK L F S + NV E F A K LQ
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+K +++G GVGKS L +QF F +D TI + + V +D + L+I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 64
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
F ++ Y + G LVY IT + TFN L E R ++ ++LVGNKCDL
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 126 RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 167
R V KE+G+ A++ N FLE+SA++ NV E F +I
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+K +++G GVGKS L +QF F +D TI + + V +D + L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDAQQCMLEILDTAGTE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
F ++ Y + G LVY IT + TFN L E R ++ ++LVGNKCDL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 126 RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 167
R V KE+G+ A++ N FLE+SA++ NV E F +I
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/166 (36%), Positives = 87/166 (52%), Gaps = 4/166 (2%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR-PIKLQIWDTAGQ 65
K +++GD GK+ L F + F + TIG++F R +T+ G + LQIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCD 122
+ Y GA G LLVYDIT ++F +L W ++ + + + LVGNK D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
L H R + E+ +F +ENG SA+T +V F K AA+IL
Sbjct: 127 LEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 96/179 (53%), Gaps = 12/179 (6%)
Query: 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
MS K + +GD VGK+C+L+ +T +F + T+ F A V +DG+ + L +W
Sbjct: 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VAVDGQIVNLGLW 62
Query: 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGN 119
DTAGQE + + YRGA +L + + + ++ N L W+ + R+ A PN+ I+LVG
Sbjct: 63 DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGT 121
Query: 120 KCDLA--------HRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQ 169
K DL H ++ +GE+ K+ G ++E S++T QNV+ F +LQ
Sbjct: 122 KLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ 180
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+K +++G GVGKS L +QF F +D TI + + V +D + L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
F ++ Y + G LVY IT + TFN L E R ++ ++LVGNKCDL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 126 RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 167
R V KE+G+ A++ FLE+SA++ NV E F +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
L K I++G GVGKS L LQF F ++ T + ++V +DG +++ I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 76
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLA 124
E + +I +Y+R G L V+ IT E+F + + E R + N+ +LVGNK DL
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
+R VS EE + A++ + ++E SA+T NV++ F +I
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
L K I++G GVGKS L LQF F ++ T + ++V +DG +++ I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 64
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLA 124
E + +I +Y+R G L V+ IT E+F + + E R + N+ +LVGNK DL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
+R VS EE + A++ + ++E SA+T NV++ F +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+K +++G GVGKS L +QF F +D TI + + V +D + L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAH 125
F ++ Y + G LVY IT + TFN L E R ++ ++LVGNKCDL
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 126 RRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAKI 167
R V KE+G+ A++ FLE+SA++ NV E F +I
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
L K I++G GVGKS L LQF F ++ T + ++V +DG +++ I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 72
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLA 124
E + +I +Y+R G L V+ IT E+F + + E R + N+ +LVGNK DL
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 132
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
+R VS EE + A++ + ++E SA+T NV++ F +I
Sbjct: 133 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
L K I++G GVGKS L LQF F ++ T + ++V +DG +++ I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGQ 62
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLA 124
E + +I +Y+R G L V+ IT E+F + + E R + N+ +LVGNK DL
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
+R VS EE + A + + ++E SA+T NV++ F +I
Sbjct: 123 DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+K +++G GVGKS L +Q F +D TI + + V IDG L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
+ ++ Y R G L V+ I ++F + + E R + ++ ++LVGNKCDLA
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+K +++G GVGKS L +Q F +D TI + + V IDG L I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
+ ++ Y R G L V+ I ++F + + E R + ++ ++LVGNKCDLA
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 98/202 (48%), Gaps = 40/202 (19%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP------------ 54
+K +++G++ VGKS ++L+ T F + TIG F +V ++
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 55 -------------------------IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89
IK IWDTAGQE + SI YYRGA A++V+DI+
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 90 RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS 149
T + +W+ + + N I+LV NK D ++ V E +++A++N LLF++ S
Sbjct: 128 NSNTLDRAKTWVNQLK--ISSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 150 ARTAQNVEEAFIKTAAKILQNI 171
A+T N++ F A +I +NI
Sbjct: 185 AKTGTNIKNIFYMLAEEIYKNI 206
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+K +++G GVGKS L +Q F +D TI + + V IDG L I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
+ ++ Y R G L V+ I ++F + + E R + ++ ++LVGNKCDLA
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+K +++G GVGKS L +Q F +D TI + + V IDG L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
+ ++ Y R G L V+ I ++F + + E R + ++ ++LVGNKCDLA
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
R V + + A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 123 -RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
L K I++G GVGKS L LQF F ++ T + ++V +DG +++ I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 65
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPN-MSIMLVGNKCDL 123
E + +I +Y+R G LLV+ IT E+F + + E R A + + +++VGNK DL
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 125
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
RR V EE A+E G+ ++E SA+T NV++ F +I
Sbjct: 126 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 3/164 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
L K I++G GVGKS L LQF F ++ T + ++V +DG +++ I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 61
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPN-MSIMLVGNKCDL 123
E + +I +Y+R G LLV+ IT E+F + + E R A + + +++VGNK DL
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL 121
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
RR V EE A+E G+ ++E SA+T NV++ F +I
Sbjct: 122 EERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
L K I++G GVGKS L LQF F ++ T + ++V +DG +++ I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVV-LDGEEVQIDILDTAGL 64
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLA 124
E + +I +Y+R G L V+ IT E+F + + E R + N+ +LVGNK DL
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 124
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
+R VS EE + A++ + ++E SA+T NV++ F +I
Sbjct: 125 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+K +++G GVGKS L +Q F +D TI + + V IDG L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
+ ++ Y R G L V+ I ++F + + E R + ++ ++LVGNKCDL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP- 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
R V ++ + A+ G+ F+E SA+T Q V++AF +I
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 122
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
+ K + F ++ L + + SA++ N E+ F+ A K++ N++ A+ A+
Sbjct: 123 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 175
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 134
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
+ K + F ++ L + + SA++ N E+ F+ A K++ N++ A+ A+
Sbjct: 135 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 187
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
+ K + F ++ L + + SA++ N E+ F+ A K++ N++ A+ A+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
+ K + F ++ L + + SA++ N E+ F+ A K++ N++ A+ A+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
+ K + F ++ L + + SA++ N E+ F+ A K++
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
+ K + F ++ L + + SA++ N E+ F+ A K++
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
+ K + F ++ L + + SA++ N E+ F+ A K++ N++ A+ A+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 89/162 (54%), Gaps = 3/162 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
+ K + F ++ L + + SA++ N E+ F+ A K++
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 3/156 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +QF F +D TI + + V ID R +L I DTAGQE F ++ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCV-IDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 79 AAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G LLV+ +T R +F + + R ++L+GNK DL H+R V++EEG+Q
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173
A++ + ++EASA+ NV++AF ++++ QE
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAF-HELVRVIRKFQE 171
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 1/159 (0%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-VEFGARMVTIDGRPIKLQIWDTAGQ 65
+K +IGD GVGK+ + + D RF+ ++ T+G V + G IK +WDTAGQ
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
E + YY GA+GA+L +D+T R T +L+ W+++ + I++ NK D+ +
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164
R+ +SK+ + K + E SA+TA N F+ A
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLA 170
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F + YY A A++ +D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
+ K + F ++ L + + SA++ N E+ F+ A K++
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
+ + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
+ K + F ++ L + + SA++ N E+ F+ A K++ N++ A+ A+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 14/181 (7%)
Query: 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
MS K + +GD VGK+C+L+ +T F + T+ F A +V +DG + L +W
Sbjct: 1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLW 59
Query: 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGN 119
DTAGQE + + YRGA +L + + + ++ +++ W+ + R +A P + I+LVG
Sbjct: 60 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYA-PGVPIILVGT 118
Query: 120 KCDLAHRR----------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
K DL + ++ +GE+ K G +++E S++T QNV+ F +L
Sbjct: 119 KLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVL 178
Query: 169 Q 169
Q
Sbjct: 179 Q 179
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 95.1 bits (235), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/165 (39%), Positives = 93/165 (56%), Gaps = 10/165 (6%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K I G GVGKS L+++F KRF +D T+ + TID + ++I DTAGQE
Sbjct: 30 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED 88
Query: 68 FRSITRS-YYRGAAGALLVYDITRRETFNH---LSSWLEDARQHANPNMSIMLVGNKCDL 123
+I R + R G +LVYDIT R +F L + L++ ++ N++++LVGNK DL
Sbjct: 89 --TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKK--PKNVTLILVGNKADL 144
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEEAFIKTAAKI 167
H R VS EEGE+ A E F E SA T + N+ E F + ++
Sbjct: 145 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 131
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
+ K + F ++ L + + SA++ N E+ F+ A K++
Sbjct: 132 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 171
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 5/175 (2%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 129
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
+ K + F ++ L + + SA++ N E+ F+ A K++ N++ A+ A+
Sbjct: 130 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 182
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + T+GVE + + PIK +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 125
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168
+ K + F ++ L + + SA++ N E+ F+ A K++
Sbjct: 126 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 165
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 92/172 (53%), Gaps = 14/172 (8%)
Query: 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
MS K + +GD VGK+C+L+ +T F + T+ F A +V +DG + L +W
Sbjct: 1 MSTARFIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLW 59
Query: 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGN 119
DTAGQE + + YRGA LL + + + ++ ++ WL + + +A P + I+LVG
Sbjct: 60 DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYA-PGIPIVLVGT 118
Query: 120 KCDLAHRR----------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
K DL + +++ +GE+ K G + +LE S++T QNV+ F
Sbjct: 119 KLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 95/175 (54%), Gaps = 5/175 (2%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + + + T+GVE + + PIK +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 134
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL--QNIQEGALDAV 179
+ K + F ++ L + + SA++ N E+ F+ A K++ N++ A+ A+
Sbjct: 135 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 187
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 86/162 (53%), Gaps = 3/162 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+K +++G GVGKS L +Q F +D TI + + V IDG L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQE 63
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAH 125
+ ++ Y R G L V+ I ++F + + E R + ++ ++LVGNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP- 122
Query: 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
R V ++ + A+ G+ F+E SA+T Q V++AF +I
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 3/166 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + TIGVE + IK +WDTAG E
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 124
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
+ K + F ++ L + + SA++ N E+ F+ A K+ N Q
Sbjct: 125 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 168
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 3/166 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + TIGVE + IK +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 131
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
+ K + F ++ L + + SA++ N E+ F+ A K+ N Q
Sbjct: 132 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 175
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 78/143 (54%), Gaps = 2/143 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +QF F +D TI + ++ ++DG P +L I DTAGQE F ++ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSY-TKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 79 AAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G LLV+ I R++FN + + + R + ++LVGNK DL +R V + E F
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140
Query: 138 AKENGLLFLEASARTAQNVEEAF 160
+ + + EASA+ NV+EAF
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAF 163
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 91.3 bits (225), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 87/166 (52%), Gaps = 3/166 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
FK +++GD G GK+ + + F+ + TIGVE + IK +WDTAG E
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
F + YY A A++++D+T R T+ ++ +W D + N+ I+L GNK D+ R
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDVKER 123
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172
+ K + F ++ L + + SA++ N E+ F+ A K+ N Q
Sbjct: 124 KV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 167
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 66
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---A 124
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 125 HRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
H R V EEG A G ++E SA+T V E F
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 94/181 (51%), Gaps = 14/181 (7%)
Query: 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
MS K + +GD VGK+CLL+ +T F + T+ F A +V ++G + L +W
Sbjct: 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLW 61
Query: 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGN 119
DTAGQE + + YRGA +L + + + ++ ++S W+ + + +A P + I+LVG
Sbjct: 62 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGT 120
Query: 120 KCDLAHRR----------AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKIL 168
K DL + ++ +GE+ K G ++E S+++ +NV+ F +L
Sbjct: 121 KLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180
Query: 169 Q 169
Q
Sbjct: 181 Q 181
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 67
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL +
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
RR ++K EEG A G ++E SA+T V E F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 84/175 (48%), Gaps = 14/175 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 69
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---A 124
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL
Sbjct: 70 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 129
Query: 125 HRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQ 169
H R V EEG A G ++E SA+T V E F LQ
Sbjct: 130 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 66
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL +
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
RR ++K EEG A G ++E SA+T V E F
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 172
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 68
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL +
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
RR ++K EEG A G ++E SA+T V E F
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
RR ++K EEG A G ++E SA+T V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQED 85
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDE 145
Query: 126 --RRAVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAF 160
RR ++K + E E G +LE SA+T + V E F
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 67
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL +
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
RR ++K EEG A G ++E SA+T V E F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 67
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL +
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
RR ++K EEG A G ++E SA+T V E F
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 173
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 85/161 (52%), Gaps = 2/161 (1%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+G VGK+ L QF + F +D T+ + +++VT+ L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHR 126
+ + S+ G G +LVY +T +F + S + + H + ++LVGNK DL+
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 127 RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167
R V EG++ A+ G F+E+SAR Q + F K +I
Sbjct: 145 REVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 140
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 141 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 173
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQED 85
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145
Query: 126 --RRAVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAF 160
RR ++K + E E G +LE SA+T + V E F
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 64
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y +L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 123
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y +L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 67 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 125
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 126 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 173
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y +L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y +L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 86.7 bits (213), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 80/152 (52%), Gaps = 3/152 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F ++ + E R + ++ ++LVGNKCDL R V ++ +
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHEL 151
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169
AK G+ F+E SA+T Q VE+AF +I Q
Sbjct: 152 AKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ 183
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI E + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIE-ESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
L K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGL 213
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLA 124
E + + Y L+ + + +F+H+ + W + R H PN I+LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 125 HRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 168
+ ++ +G AKE G + +LE SA T + ++ F + +L
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
L K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGL 213
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLA 124
E + + Y L+ + + +F+H+ + W + R H PN I+LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 125 HRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKIL 168
+ ++ +G AKE G + +LE SA T + ++ F + +L
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 329
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
L K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGL 213
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLA 124
E + + Y L+ + + +F+H+ + W + R H PN I+LVG K DL
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLR 272
Query: 125 HRR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 273 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 8/157 (5%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K I+G VGKS L +QF + +F +D TI F +++T++G+ LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLS----SWLEDARQHANPNMSIMLVGNKCDL 123
+ ++Y G +LVY +T ++F + L+ + P IMLVGNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP---IMLVGNKKDL 123
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
R +S EEG+ A+ FLE+SA+ Q + F
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K I+G VGKS L +QF + +F +D TI F +++T++G+ LQ+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCDLA 124
+ ++Y G +LVY +T ++F + L D + IMLVGNK DL
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 119
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
R +S EEG+ A+ FLE+SA+ Q + F
Sbjct: 120 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 155
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQ 169
+ ++ +G AKE G + +LE SA T + ++ F + +L+
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLK 178
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 69
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 128
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 129 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 89
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 6/156 (3%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K I+G VGKS L +QF + +F +D TI F +++T++G+ LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCDLA 124
+ ++Y G +LVY +T ++F + L D + IMLVGNK DL
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 124
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
R +S EEG+ A+ FLE+SA+ Q + F
Sbjct: 125 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 81
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 140
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 141 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 188
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D +I + + V IDG L I DTAGQE + ++ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 139
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 140 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 172
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 131
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 132 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 179
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGN+CDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ F+ +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127
+ Y L+ + I ++ ++ +H PN+ I+LVGNK DL +
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 128 AVSKE------------EGEQFAKENGLL-FLEASARTAQNVEEAF 160
++E EG A G ++E SA+T V E F
Sbjct: 126 HTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D +I + + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
K+ L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DT GQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DT GQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAG+E + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 76/143 (53%), Gaps = 3/143 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAF 160
A+ G+ ++E SA+T Q VE+AF
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAF 156
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAG E + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ + +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
RR ++K EEG A G ++E SA+T V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ + +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
RR ++K EEG A G ++E SA+T V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ + +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 63
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL +
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
RR ++K EEG A G ++E SA+T V E F
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K I+G VGKS L +QF + +F D TI F +++T++G+ LQ+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCDLA 124
+ ++Y G +LVY +T ++F + L D + IMLVGNK DL
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV--GKVQIPIMLVGNKKDLH 122
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
R +S EEG+ A+ FLE+SA+ Q + F
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 158
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 84.0 bits (206), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ + +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 63
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL +
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
RR ++K EEG A G ++E SA+T V E F
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 169
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ + +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 65
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL +
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 126 --RRAVSK--------EEGEQFAKENGLL-FLEASARTAQNVEEAF 160
RR ++K EEG A G ++E SA+T V E F
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 171
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAG E + ++ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 138
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 139 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 171
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 83.6 bits (205), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ + +F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQED 65
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-- 125
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 125
Query: 126 --RRAVSKEEGEQFAKENG---------LLFLEASARTAQNVEEAF 160
RR ++K + E E G +LE SA+T + V E F
Sbjct: 126 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 171
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAG E + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 89
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAG E + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAG E + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT--IDGRPIKLQIWDTAGQ 65
K +++GD G GK+ LL+ F D F + T+ F MV + G+P+ L IWDTAGQ
Sbjct: 36 KVVLVGDGGCGKTSLLMVFADGAFPESYTPTV---FERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + + +Y A+ LL +D+T +F+++ + H + I++VG K DL
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 126 RRA------------VSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKILQN 170
++ V+ G++ A+ G + +LE SAR NV F + A L +
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS 210
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAG E + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAG E + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 89
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 148
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 149 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +QF K F P +D TI + + ID + L + DTAGQE F ++ Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 79 AAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L+VY +T + +F H+ + + R + ++LV NK DL H R V++++G++
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 138 AKENGLLFLEASARTAQ-NVEEAF 160
A + + ++E SA+ NV++ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 65
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 124
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 125 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 172
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 82.4 bits (202), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGLE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H PN I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
+ ++ +G AKE G + +LE SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 169
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +++GD VGK+ L++ +T + P + + + +V++DGRP++LQ+ DTAGQ+
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL--- 123
F + Y LL + + +F ++S W+ + R H P I+LVG + DL
Sbjct: 81 FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLRED 139
Query: 124 ---------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
+ V +E + A+E ++E SA T +N++E F
Sbjct: 140 VKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 63
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H P+ I+LVG K DL
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 126 RR------------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
+ ++ +G A+E G + +LE SA T + ++ F + +L
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 3/144 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +QF K F P +D TI + + ID + L + DTAGQE F ++ Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 79 AAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L+VY +T + +F H+ + + R + ++LV NK DL H R V++++G++
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 144
Query: 138 AKENGLLFLEASARTAQ-NVEEAF 160
A + + ++E SA+ NV++ F
Sbjct: 145 ATKYNIPYIETSAKDPPLNVDKTF 168
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNK DLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 87/176 (49%), Gaps = 16/176 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 63
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H P+ I+LVG K DL
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 122
Query: 126 RR------------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
+ ++ +G A+E G + +LE SA T + ++ F + +L
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL 178
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + +F ++ + W + R H P+ I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-PHTPILLVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKENG-LLFLEASARTAQNVEEAF 160
+ ++ +G A+E G + +LE SA T + ++ F
Sbjct: 122 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVF 169
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAG E + ++ Y R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNKCDL R V ++ +
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDL 151
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKI 167
A+ G+ F+E SA+T Q V++AF +I
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 181
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ + +F V+ T+ + A + +DG+ ++L +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGLED 68
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---A 124
+ + Y L+ + I ++ ++ +H PN+ I+LVGNK DL
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 125 HRR---------AVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
H R V EEG A G ++E SA+T V E F
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 174
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +D +P+ L +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDSKPVNLGLWDTAGQE 68
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + ++ ++ + W + R H P+ I+LVG K DL
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 127
Query: 126 RR------------AVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
+ ++ +G AKE + + +LE SA T + ++ F
Sbjct: 128 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 175
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +D +P+ L +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDSKPVNLGLWDTAGQE 69
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + ++ ++ + W + R H P+ I+LVG K DL
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 128
Query: 126 RR------------AVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
+ ++ +G AKE + + +LE SA T + ++ F
Sbjct: 129 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 176
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNK DLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 35/187 (18%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +DG+P+ L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE 64
Query: 67 SFRSITRSYYRGAAGALLVYDITRR-------ETF-------------NHLSSWLEDARQ 106
+ + Y G DIT R + F N + W + R
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 107 HANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENGLL-FLEASARTA 153
H PN I+LVG K DL + ++ +G AKE G + +LE SA T
Sbjct: 125 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 183
Query: 154 QNVEEAF 160
+ ++ F
Sbjct: 184 RGLKTVF 190
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +++GD GK+CLL+ F+ F V+ T+ + A + +DG+ ++L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQED 85
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDL--- 123
+ + Y L+ + + ++ ++ W+ + + H PN+ I+LV NK DL
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKKDLRSD 144
Query: 124 AHRR---------AVSKEEGEQFA-KENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
H R V ++G A + +LE SA+T + V E F LQ
Sbjct: 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T F + T+ + A V +D +P+ L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDSKPVNLGLWDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH 125
+ + Y L+ + + ++ ++ + W + R H P+ I+LVG K DL
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHC-PSTPIILVGTKLDLRD 121
Query: 126 RR------------AVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
+ ++ +G AKE + + +LE SA T + ++ F
Sbjct: 122 DKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVF 169
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNK DL R V ++ +
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQDL 134
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKI 167
A+ G+ F+E SA+T Q V++AF +I
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTAGQE + ++ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNK DL R V ++ +
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLP-SRTVDTKQAQDL 134
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKI 167
A+ G+ F+E SA+T Q V++AF +I
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTA QE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNK DLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +Q F +D TI + + V IDG L I DTA QE + ++ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 79 AAGALLVYDITRRETFNHLSSWLED-ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L V+ I ++F + + E R + ++ ++LVGNK DLA R V + +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA-RTVESRQAQDL 133
Query: 138 AKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170
A+ G+ ++E SA+T Q VE+AF +I Q+
Sbjct: 134 ARSYGIPYIETSAKTRQGVEDAFYTLVREIRQH 166
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 84/158 (53%), Gaps = 4/158 (2%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
L++ +++GD GVGK+ L F K+ + +H+ +G + R +T+DG L + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 66 ESF-RSITR-SYYRGAAGALLVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNKCD 122
E +S ++ S +G + ++VY I R +F S ++ R H ++ I+LVGNK D
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKAD 122
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
LA R VS EEG A F+E SA NV E F
Sbjct: 123 LARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +QF K F +D TI + + ID + L + DTAGQE F ++ Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 79 AAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L+VY +T + +F H+ + + R + ++LV NK DL H R V++++G++
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 138 AKENGLLFLEASARTAQ-NVEEAF 160
A + + ++E SA+ NV++ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 78/144 (54%), Gaps = 3/144 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +QF K F +D TI + + ID + L + DTAGQE F ++ Y R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSY-RKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 79 AAGALLVYDITRRETFNHLSSWLE-DARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G L+VY +T + +F H+ + + R + ++LV NK DL H R V++++G++
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEM 149
Query: 138 AKENGLLFLEASARTAQ-NVEEAF 160
A + + ++E SA+ NV++ F
Sbjct: 150 ATKYNIPYIETSAKDPPLNVDKTF 173
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 3/156 (1%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
++ + G GVGKS L+L+F F+ + T+ + ++++ D LQI DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLA 124
F ++ R +LVY IT R++ L E + ++ IMLVGNKCD +
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
R V E E A+ F+E SA+ NV+E F
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 9/175 (5%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTIDGRPIKLQIW--DTA 63
K ++G+ VGKS L+ FT K +F + +T GVE VTI + ++++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE---DARQHANPNMSIMLVGNK 120
G + ++ Y+ G A+LV+D++ E+F +W E AR + +LV NK
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 121 CDL-AHRRAVSKEEGEQFAKENGLLFLEASARTA-QNVEEAFIKTAAKILQNIQE 173
DL R V + + +A N L F + SA ++ + F+ A +N ++
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED 196
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 4/167 (2%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLLL F+ + T+ F + ++ L +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
+ + Y + LL + + R +F+++S+ E +H +LVG K DL
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142
Query: 127 RA--VSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQN 170
+ V+K+EG+ ++ G + ++EAS+ + E F K+ I N
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 4/167 (2%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLLL F+ + T+ F + ++ L +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126
+ + Y + LL + + R +F+++S+ E +H +LVG K DL
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 141
Query: 127 RA--VSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIKTAAKILQN 170
+ V+K+EG+ ++ G + ++EAS+ + E F K+ I N
Sbjct: 142 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 188
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
+ K +++GD VGK+CLL+ + + F + T+ + A VT+ G+ L ++DTAGQ
Sbjct: 18 MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQ 76
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL- 123
E + + Y L+ + + +F ++ W+ + +++A PN+ +L+G + DL
Sbjct: 77 EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLR 135
Query: 124 -----------AHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTAAKIL 168
+ + E+G++ AKE G ++E SA T + ++ F + IL
Sbjct: 136 DDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 2/143 (1%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L +QF F +D TI +F + + +D P L+I DTAG E F S+ Y +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 79 AAGALLVYDITRRETFNHLSSWLEDA-RQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137
G +LVY + +++F + + R + ++LVGNK DL R VS EG
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 138 AKENGLLFLEASARTAQNVEEAF 160
A+E G F+E SA++ V+E F
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELF 157
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 84/167 (50%), Gaps = 16/167 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +I+GD GK+CLL+ + +F V+ T+ + A V +DGR ++L +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVAD-VEVDGRRVELALWDTAGQED 70
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH- 125
+ + Y + L+ + I ++ ++ W+ + H + I+LVG K DL +
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL-HFCQGVPIILVGCKVDLRND 129
Query: 126 -----------RRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160
++ V+ +EG+ A + G + E SA+T V E F
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 5/143 (3%)
Query: 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70
I+G G GKS L ++F KRF +D + + + T+D +P+ L++ DTA ++ R+
Sbjct: 26 ILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEE-TVDHQPVHLRVMDTADLDTPRN 84
Query: 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP---NMSIMLVGNKCDLAHRR 127
R Y A L+VY + R++F+ SS+LE HA ++ +L+GNK D+A R
Sbjct: 85 CER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYR 143
Query: 128 AVSKEEGEQFAKENGLLFLEASA 150
V+K EG A G LF E SA
Sbjct: 144 QVTKAEGVALAGRFGCLFFEVSA 166
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 125
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 64
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 123
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 131
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 132 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 179
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 69
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVXIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 69
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 128
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 129 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 176
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 65
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 63
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 122
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 123 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 170
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 65
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 124
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 125 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 172
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 64
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 123
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 124 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 171
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVF 169
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F P + + A V I G P L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +++GD+ GK+ LL F F + T+ + A ID + I+L +WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 88
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---- 123
+ ++ Y + L+ +DI+R ET + + + Q PN ++LVG K DL
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148
Query: 124 -------AHRR-AVSKEEGEQFAKENG-LLFLEASARTAQN 155
HR+ VS ++G AK+ G ++E SA ++N
Sbjct: 149 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +++GD+ GK+ LL F F + T+ + A ID + I+L +WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 67
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---- 123
+ ++ Y + L+ +DI+R ET + + + Q PN ++LVG K DL
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127
Query: 124 -------AHRR-AVSKEEGEQFAKENG-LLFLEASARTAQN 155
HR+ VS ++G AK+ G ++E SA ++N
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 79/161 (49%), Gaps = 14/161 (8%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +++GD+ GK+ LL F F + T+ + A ID + I+L +WDT+G
Sbjct: 25 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 83
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL---- 123
+ ++ Y + L+ +DI+R ET + + + Q PN ++LVG K DL
Sbjct: 84 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 143
Query: 124 -------AHRR-AVSKEEGEQFAKENG-LLFLEASARTAQN 155
HR+ VS ++G AK+ G ++E SA ++N
Sbjct: 144 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLRDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T + + T+ + A V I G P L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGLE 66
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 125
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 126 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 173
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +++GD GK+ +L + + T+ + A + T + R ++L +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 70
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCD---- 122
+ ++ Y + LL +DI+R ET + L W + + P+ ++L+G K D
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 129
Query: 123 ------LAHRR--AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQN 170
L+H++ +S E+G AK+ G ++LE SA T++ + +TA+ + N
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 186
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +++GD GK+ +L + + T+ + A + T + R ++L +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 87
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCD---- 122
+ ++ Y + LL +DI+R ET + L W + + P+ ++L+G K D
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 146
Query: 123 ------LAHRR--AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQN 170
L+H++ +S E+G AK+ G ++LE SA T++ + +TA+ + N
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 16/168 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
K +++GD VGK+CLL+ +T +F + T+ + A V I G P L ++DTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGLE 62
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDL-- 123
+ + Y L+ + + +F ++ W+ + H P +LVG + DL
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRD 121
Query: 124 ----------AHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAF 160
++ ++ E E+ A++ + ++E SA T + ++ F
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVF 169
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K +++GD GK+ +L + + T+ + A + T + R ++L +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQR-VELSLWDTSGSPY 71
Query: 68 FRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCD---- 122
+ ++ Y + LL +DI+R ET + L W + + P+ ++L+G K D
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTD 130
Query: 123 ------LAHRR--AVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIKTAAKILQN 170
L+H++ +S E+G AK+ G ++LE SA T++ + +TA+ + N
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 187
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 2/159 (1%)
Query: 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
D +FK +++G++GVGKS L F + H+ + R + +D + L ++D
Sbjct: 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 64 GQESFRSITRSYYRGAAGA-LLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKC 121
Q R + A L+V+ +T R +F+ + L R + ++ ++LVGNK
Sbjct: 81 EQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 140
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
DLA R VS EEG A +E SA N E F
Sbjct: 141 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 2/159 (1%)
Query: 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
D +FK +++G++GVGKS L F + H++ + R + +D + L ++D
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 64 GQESFRSITRSYYRGAAGA-LLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKC 121
Q + + A L+V+ +T R +F+ + L R + ++ ++LVGNK
Sbjct: 70 EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 129
Query: 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
DLA R VS EEG A +E SA N E F
Sbjct: 130 DLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 168
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 24/172 (13%)
Query: 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRP 54
M+Y ++ ++IG+ GVGKS L F VHD +G + R + +DG
Sbjct: 4 MTY---YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDXEVLGEDTYERTLMVDGES 55
Query: 55 ---IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHA 108
I L +W+ G+ + + + L+VY IT R +F S L ARQ
Sbjct: 56 ATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-- 111
Query: 109 NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
++ I+LVGNK DL R VS EG A F+E SA NV+E F
Sbjct: 112 TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 79/172 (45%), Gaps = 24/172 (13%)
Query: 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRP 54
M+Y ++ ++IG+ GVGKS L F VHD +G + R + +DG
Sbjct: 4 MTY---YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDXEVLGEDTYERTLMVDGES 55
Query: 55 ---IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHA 108
I L +W+ G+ + + + L+VY IT R +F S L ARQ
Sbjct: 56 ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-- 111
Query: 109 NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
++ I+LVGNK DL R VS EG A F+E SA NV+E F
Sbjct: 112 TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF 163
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 21/166 (12%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRP---IKL 57
++ ++IG+ GVGKS L F VHD +G + R + +DG I L
Sbjct: 38 YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 92
Query: 58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSI 114
+W+ G+ + + + L+VY IT R +F S L ARQ ++ I
Sbjct: 93 DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPI 148
Query: 115 MLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
+LVGNK DL R VS EG A F+E SA NV+E F
Sbjct: 149 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 2/157 (1%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
+FK +++G++GVGKS L F + H++ + R + +D + L ++D Q
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 66 ESFRSITRSYYRGAAGA-LLVYDITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDL 123
+ + A L+V+ +T R +F+ + L R + ++ ++LVGNK DL
Sbjct: 62 GDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 121
Query: 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
A R VS EEG A +E SA N E F
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 158
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 76/166 (45%), Gaps = 21/166 (12%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRP---IKL 57
++ ++IG+ GVGKS L F VHD +G + R + +DG I L
Sbjct: 7 YRVVLIGEQGVGKSTLA-----NIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 61
Query: 58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSW---LEDARQHANPNMSI 114
+W+ G+ + + + L+VY IT R +F S L ARQ ++ I
Sbjct: 62 DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ--TEDIPI 117
Query: 115 MLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
+LVGNK DL R VS EG A F+E SA NV+E F
Sbjct: 118 ILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 163
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 4/144 (2%)
Query: 19 KSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78
KS L+L+F F+ + TI + ++++ D LQI DT G F ++ R
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 79 AAGALLVYDITRRETFNHLSSWLEDARQH--ANPNMSIMLVGNKCDLAHRRAVSKEEGEQ 136
+LV+ +T +++ L + Q + ++ +MLVGNKCD +R V E +
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQA 138
Query: 137 FAKENGLLFLEASARTAQNVEEAF 160
A+E F+E SA+ NV+E F
Sbjct: 139 VAQEWKCAFMETSAKMNYNVKELF 162
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 7/163 (4%)
Query: 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
MS + ++K +++G GVGKS L F P + G + R + +DG L ++
Sbjct: 2 MSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVY 59
Query: 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLV 117
D Q+ R + ++VY +T + +F + L L ARQ ++ I+LV
Sbjct: 60 DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILV 117
Query: 118 GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
GNK DL R VS +EG A F+E SA NV+ F
Sbjct: 118 GNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 7/163 (4%)
Query: 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIW 60
+S + ++K +++G GVGKS L F P + G + R + +DG L ++
Sbjct: 2 VSDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVY 59
Query: 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLV 117
D Q+ R + ++VY +T + +F + L L ARQ ++ I+LV
Sbjct: 60 DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILV 117
Query: 118 GNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
GNK DL R VS +EG A F+E SA NV+ F
Sbjct: 118 GNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 160
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 7/158 (4%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
++K +++G GVGKS L F P + G + R + +DG L ++D Q
Sbjct: 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAA-GHTYD-RSIVVDGEEASLMVYDIWEQ 59
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETF---NHLSSWLEDARQHANPNMSIMLVGNKCD 122
+ R + ++VY +T + +F + L L ARQ ++ I+LVGNK D
Sbjct: 60 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ--TDDVPIILVGNKSD 117
Query: 123 LAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
L R VS +EG A F+E SA NV+ F
Sbjct: 118 LVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 155
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L +F + TI G + T++ R KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 73
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCD 122
S RS R+Y+ G + V D R+ L S L + R ++++ NK D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQD 130
Query: 123 L 123
L
Sbjct: 131 L 131
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L +F + TI G + T++ R KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 73
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCD 122
S RS R+Y+ G + V D R+ L S L + R ++++ NK D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQD 130
Query: 123 L 123
L
Sbjct: 131 L 131
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 12/121 (9%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L +F + TI G + T++ R KL IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDID-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 71
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKCD 122
S RS R+Y+ G + V D R+ L S L + R ++++ NK D
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQD 128
Query: 123 L 123
L
Sbjct: 129 L 129
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 8 KYIIIGDTGVGKSCLLLQF--TDKRFQPVHDLTIGVEFGARMVTIDG---RPIKLQIWDT 62
K I+G+TG GK+ LL Q T K T+G++ + I R + L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
AG+E F S + A L VYD+++ + + WL + + A+ + ++LVG
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 120
Query: 122 DLAHRR 127
D++ +
Sbjct: 121 DVSDEK 126
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 8 KYIIIGDTGVGKSCLLLQF--TDKRFQPVHDLTIGVEFGARMVTIDG---RPIKLQIWDT 62
K I+G+TG GK+ LL Q T K T+G++ + I R + L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 63 AGQESFRSITRSYYRGAAGALLVYDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKC 121
AG+E F S + A L VYD+++ + + WL + + A+ + ++LVG
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-PVILVGTHL 122
Query: 122 DLAHRR 127
D++ +
Sbjct: 123 DVSDEK 128
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +I+G G GK+ +L R Q +T G + T+ + +KL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILY-----RLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQT 73
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCD 122
S R R YY A + V D T ++ + S L Q + +LV NK D
Sbjct: 74 SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQD 130
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 12/122 (9%)
Query: 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65
+ + +++G GK+ +L +F + TI G + T++ R KL IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGL 55
Query: 66 ESFRSITRSYYRGAAGALLVYDITRRETFN----HLSSWLEDARQHANPNMSIMLVGNKC 121
+S RS R+Y+ G + V D R+ L S L + R ++++ NK
Sbjct: 56 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERL---AGATLLIFANKQ 112
Query: 122 DL 123
DL
Sbjct: 113 DL 114
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 18 GKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR 77
GK+ +L +F + TI G + T++ R KL IWD GQ+S RS R+Y+
Sbjct: 30 GKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 78 GAAGALLVYDITRRE 92
G + V D R+
Sbjct: 85 STDGLIWVVDSADRQ 99
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K II+G GK+ +L QF+ + VH G+ + I + +WD GQES
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMN--EVVHT---SPTIGSNVEEIVINNTRFLMWDIGGQES 77
Query: 68 FRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
RS +YY ++V D +TR E + L+ ED R+ +++ N
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFAN 130
Query: 120 KCDLAHRRAVSKEEGEQFAK 139
K D+ + ++ E QF K
Sbjct: 131 KQDV--KECMTVAEISQFLK 148
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K II+G GK+ +L QF+ + VH G+ + I + +WD GQES
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMN--EVVHT---SPTIGSNVEEIVINNTRFLMWDIGGQES 72
Query: 68 FRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
RS +YY ++V D +TR E + L+ ED R+ +++ N
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFAN 125
Query: 120 KCDLAHRRAVSKEEGEQFAK 139
K D+ + ++ E QF K
Sbjct: 126 KQDV--KECMTVAEISQFLK 143
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K II+G GK+ +L QF+ + VH G+ + I + +WD GQES
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMN--EVVHT---SPTIGSNVEEIVINNTRFLMWDIGGQES 78
Query: 68 FRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
RS +YY ++V D +TR E + L+ ED R+ +++ N
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFAN 131
Query: 120 KCDLAHRRAVSKEEGEQFAK 139
K D+ + ++ E QF K
Sbjct: 132 KQDV--KECMTVAEISQFLK 149
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K II+G GK+ +L QF+ + VH G+ + I + +WD GQES
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMN--EVVHT---SPTIGSNVEEIVINNTRFLMWDIGGQES 72
Query: 68 FRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
RS +YY ++V D +TR E + L+ ED R+ +++ N
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH--EDLRKAG-----LLIFAN 125
Query: 120 KCDLAHRRAVSKEEGEQFAK 139
K D+ + ++ E QF K
Sbjct: 126 KQDV--KECMTVAEISQFLK 143
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 35 HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94
D+ V F R VT IK IWD GQ FRS+ Y RG + + D RE
Sbjct: 49 EDMIPTVGFNMRKVTKGNVTIK--IWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKI 106
Query: 95 ----NHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125
N L + L+ + P ++++GNK DL +
Sbjct: 107 EASRNELHNLLDKPQLQGIP---VLVLGNKRDLPN 138
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
K II+G GK+ +L QF + VH G+ + I + +WD GQES
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMN--EVVHT---SPTIGSNVEEIVVKNTHFLMWDIGGQES 72
Query: 68 FRSITRSYYRGAAGALLVYD--------ITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119
RS +YY +LV D IT+ E + L+ ED R+ A +++ N
Sbjct: 73 LRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAH--EDLRKAA-----VLIFAN 125
Query: 120 KCDL 123
K D+
Sbjct: 126 KQDM 129
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + +T G + T++ + I +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNICFTVWDVGGQD 84
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
R + R Y++ G + V D RE + L+ Q +++LV NK D+ +
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 126 RRAVSK 131
VS+
Sbjct: 145 AMPVSE 150
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 35 HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94
D+ V F R +T IKL WD GQ FRS+ Y RG + + + D +E
Sbjct: 49 EDMIPTVGFNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI 106
Query: 95 ----NHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
N L + L+ + P ++++GNK DL
Sbjct: 107 EASKNELHNLLDKPQLQGIP---VLVLGNKRDLP 137
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G G GK+ +L + + +T G + T+ + I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLY-----KLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
RS+ R YYR G + V D R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDR 97
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G G GK+ +L + + +T G + T+ + I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLY-----KLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
RS+ R YYR G + V D R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDR 97
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + K Q V T G + T+ + +K +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQD 377
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
R + R YY G G + V D R+ +++ARQ + ++ I++
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 430
Query: 119 NKCDLA 124
NK DL
Sbjct: 431 NKQDLP 436
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G G GK+ +L + + V +T G + T+ + I +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKL---KLGEV--ITTIPTIGFNVETVQYKNISFTVWDVGGQD 55
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
RS+ R YYR G + V D R
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDR 80
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +I+G G GK+ +L R Q +T G + T+ + +K Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILY-----RLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQT 57
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
S R R YY + V D R+ S L + +I++V NK D+
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 117
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 35 HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF 94
D+ V F R +T IKL WD GQ FRS+ Y RG + + + D +E
Sbjct: 58 EDMIPTVGFNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI 115
Query: 95 ----NHLSSWLEDARQHANPNMSIMLVGNKCDLA 124
N L + L+ + P ++++GNK DL
Sbjct: 116 EASKNELHNLLDKPQLQGIP---VLVLGNKRDLP 146
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + K Q V T G + T+ + +K +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQD 67
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
R + R YY G G + V D R+ +++ARQ + ++ I++
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 120
Query: 119 NKCDLA 124
NK DL
Sbjct: 121 NKQDLP 126
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + K Q V T G + T+ + +K +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQD 68
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
R + R YY G G + V D R+ +++ARQ + ++ I++
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 121
Query: 119 NKCDLA 124
NK DL
Sbjct: 122 NKQDLP 127
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + K Q V T G + T+ + +K +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQD 55
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
R + R YY G G + V D R+ +++ARQ + ++ I++
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 108
Query: 119 NKCDLA 124
NK DL
Sbjct: 109 NKQDLP 114
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 44 GARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED 103
G + T++ R I +WD GQ+ R + R YY G + V D RE ++D
Sbjct: 50 GFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRER-------IDD 102
Query: 104 ARQHANPNMS--------IMLVGNKCDLAH 125
AR+ + ++ I++ NK DL +
Sbjct: 103 AREELHRMINEEELKDAIILVFANKQDLPN 132
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 20/126 (15%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + K Q V T G + T+ + +K +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQD 55
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
R + R YY G G + V D R+ +++ARQ + ++ I++
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 108
Query: 119 NKCDLA 124
NK DL
Sbjct: 109 NKQDLP 114
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 44 GARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLED 103
G + T+ + +K +WD GQ+ R + R YY G G + V D R+ +++
Sbjct: 33 GFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDE 85
Query: 104 ARQHANPNMS--------IMLVGNKCDLA 124
ARQ + ++ I++ NK DL
Sbjct: 86 ARQELHRIINDREXRDAIILIFANKQDLP 114
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + +T G + T++ + I +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 220
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
R + R Y++ G + V D RE N L +++LV NK DL +
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + + +T G + T++ + I +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 71
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
R + R Y++ G + V D RE N L +++LV NK DL +
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 131
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 6/120 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + +T G + T++ + I +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 55
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
R + R Y++ G + V D RE N L +++LV NK DL +
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + + +T G + T++ + I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
R + R Y++ G + V D RE N L +++LV NK DL +
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 132
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 6/126 (4%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + +T G + T++ + I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
R + R YY+ + V D R+ L +I+LV NK DL
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAILLVFANKHDLPQ 132
Query: 126 RRAVSK 131
++S+
Sbjct: 133 AMSISE 138
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + + +T G + T++ + I +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILY-----KLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
R + + Y++ G + V D RE ++ L+ +++L+ NK DL +
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPN 132
Query: 126 RRAVSK 131
A+S+
Sbjct: 133 AMAISE 138
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +I+G G GK+ +L R Q +T G + T+ + +K Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILY-----RLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLT 59
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
S R R YY + V D R+ S L + +I++V NK D+
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 119
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 20/126 (15%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + K Q V T G + T+ + +K +WD G +
Sbjct: 3 MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGLD 57
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
R + R YY G G + V D R+ +++ARQ + ++ I++
Sbjct: 58 KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 110
Query: 119 NKCDLA 124
NK DL
Sbjct: 111 NKQDLP 116
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 20/126 (15%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + K Q V T G + T+ + +K +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGLD 68
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
R + R YY G G + V D R+ +++ARQ + ++ I++
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 121
Query: 119 NKCDLA 124
NK DL
Sbjct: 122 NKQDLP 127
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 20/126 (15%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + K Q V T G + T+ + +K +WD G +
Sbjct: 4 MRILMLGLDAAGKTTILYKL--KLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGLD 58
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS--------IMLVG 118
R + R YY G G + V D R+ +++ARQ + ++ I++
Sbjct: 59 KIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQELHRIINDREMRDAIILIFA 111
Query: 119 NKCDLA 124
NK DL
Sbjct: 112 NKQDLP 117
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
+ +I+G G GK+ +L R Q +T G + T+ + +K Q+WD G S
Sbjct: 9 RILILGLDGAGKTTILY-----RLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTS 63
Query: 68 FRSITRSYYRGAAGALLVYDITRRE 92
R R YY + V D R+
Sbjct: 64 IRPYWRCYYSNTDAVIYVVDSCDRD 88
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 6/120 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + +T G + T++ + I +WD G +
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGLD 57
Query: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLV-GNKCDLAH 125
R + R Y++ G + V D RE N L +++LV NK DL +
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 117
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G GK+ +L + +T G + T++ + I +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQD 75
Query: 67 SFRSITRSYYRGAAGALLVYDITRRE 92
R + R Y++ G + V D R+
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSNDRD 101
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
D + +++G GK+ LL Q + + +T F + V G KL +WD
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLAS---EDISHITPTQGFNIKSVQSQG--FKLNVWDIG 69
Query: 64 GQESFRSITRSYYRGAAGALLVYDITRRETF 94
GQ R RSY+ + V D R+ F
Sbjct: 70 GQRKIRPYWRSYFENTDILIYVIDSADRKRF 100
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
D + +++G GK+ LL Q + + +T F + V G KL +WD
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLAS---EDISHITPTQGFNIKSVQSQG--FKLNVWDIG 68
Query: 64 GQESFRSITRSYYRGAAGALLVYDITRRETF 94
GQ R RSY+ + V D R+ F
Sbjct: 69 GQRKIRPYWRSYFENTDILIYVIDSADRKRF 99
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
+ +++G GK+ LL Q + + +T F + V G KL +WD GQ
Sbjct: 6 RILLLGLDNAGKTTLLKQLAS---EDISHITPTQGFNIKSVQSQG--FKLNVWDIGGQRK 60
Query: 68 FRSITRSYYRGAAGALLVYDITRRETF 94
R RSY+ + V D R+ F
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66
+ +++G G GK+ +L + + +T G + + I +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLY-----KLKLGEVITTIPTIGFNVECVQYCNISFTVWDVGGQD 72
Query: 67 SFRSITRSYYRGAAGALLVYDITRR 91
RS+ R YY G + V D R
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDR 97
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67
+ +++G GK+ LL Q + + +T F + V G KL +WD G
Sbjct: 6 RILLLGLDNAGKTTLLKQLAS---EDISHITPTQGFNIKSVQSQG--FKLNVWDIGGLRK 60
Query: 68 FRSITRSYYRGAAGALLVYDITRRETF 94
R RSY+ + V D R+ F
Sbjct: 61 IRPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 20/128 (15%)
Query: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIK---------- 56
K +IGD GK+ LL Q + F P T G +VT IK
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQT----HGLNVVTKQAPNIKGLENDDELKE 97
Query: 57 --LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI 114
WD GQE + + + ++ +L+ D +R ++ H WL ++ + +
Sbjct: 98 CLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLD-SRTDSNKHY--WLRHIEKYGGKS-PV 153
Query: 115 MLVGNKCD 122
++V NK D
Sbjct: 154 IVVMNKID 161
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 49 TIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA 108
T+ + I ++WD GQ R R Y+ + V D T R+ L
Sbjct: 60 TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED 119
Query: 109 NPNMSIMLV-GNKCDL---AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160
S++L+ NK DL A ++++ G +++S++T + E
Sbjct: 120 ELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGM 175
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 22/134 (16%)
Query: 9 YIIIGDTGVGKSCL---LLQFT------DKRFQPVHDLTIGVEFG--ARMVTI------- 50
+ II GKS L LL++T +KR Q + L + E G +M +
Sbjct: 9 FCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAK 68
Query: 51 DGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANP 110
DG KL + DT G F GALL+ D ++ ++++ + Q
Sbjct: 69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ---- 124
Query: 111 NMSIMLVGNKCDLA 124
++ I+ V NK DL
Sbjct: 125 DLVIIPVINKIDLP 138
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMVTIDGRPIKLQ 58
+S + F + +G+TG+GKS L+ + +F +P GV+ + + ++L+
Sbjct: 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLK 96
Query: 59 I 59
+
Sbjct: 97 L 97
>pdb|4FU3|A Chain A, Cid Of Human Rprd1b
pdb|4FU3|B Chain B, Cid Of Human Rprd1b
Length = 135
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 97 LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-----------SKEEGEQFAKENGLLF 145
LS WL R+HA P +S+ + ++R+ SK +G +F +E +
Sbjct: 26 LSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVL 85
Query: 146 LEASARTAQNVEEAFIKTAAKILQNIQEGAL 176
++A + A+ +E K ++L QE ++
Sbjct: 86 VDAFSHVAREADEGCKKPLERLLNIWQERSV 116
>pdb|4HFG|A Chain A, Cid Of Human Rprd1b
pdb|4HFG|B Chain B, Cid Of Human Rprd1b
Length = 135
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 97 LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-----------SKEEGEQFAKENGLLF 145
LS WL R+HA P +S+ + ++R+ SK +G +F +E +
Sbjct: 26 LSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVL 85
Query: 146 LEASARTAQNVEEAFIKTAAKILQNIQEGAL 176
++A + A+ +E K ++L QE ++
Sbjct: 86 VDAFSHVAREADEGCKKPLERLLNIWQERSV 116
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The
P21-Like Triphosphate And Mg2+ Binding Site
Length = 128
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA 63
D K++++G+ G GKS + + F V D GV+ + G + W+
Sbjct: 2 DKELKFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVD-ALNKLQAGGYGFVISDWNMP 60
Query: 64 GQESFRSITRSYYRGAAGALLVYDIT 89
+ + GA AL V +T
Sbjct: 61 NMDGLELLKTIRADGAMSALPVLMVT 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,231,327
Number of Sequences: 62578
Number of extensions: 235764
Number of successful extensions: 1289
Number of sequences better than 100.0: 343
Number of HSP's better than 100.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 600
Number of HSP's gapped (non-prelim): 350
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)