Query 028294
Match_columns 211
No_of_seqs 142 out of 1893
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:17:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028294.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028294hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 8.6E-44 1.9E-48 253.0 21.6 188 2-189 5-193 (205)
2 KOG0098 GTPase Rab2, small G p 100.0 1.2E-41 2.5E-46 239.5 21.3 188 1-188 1-189 (216)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 2.6E-41 5.7E-46 239.4 19.2 198 4-211 3-200 (200)
4 KOG0078 GTP-binding protein SE 100.0 8.4E-40 1.8E-44 235.8 22.6 176 2-177 8-183 (207)
5 PLN03108 Rab family protein; P 100.0 7.8E-39 1.7E-43 240.8 26.7 210 1-210 1-210 (210)
6 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.6E-39 3.6E-44 230.4 20.4 168 5-172 21-189 (221)
7 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.6E-39 3.5E-44 233.4 20.1 210 2-211 10-222 (222)
8 KOG0080 GTPase Rab18, small G 100.0 1.8E-39 3.9E-44 223.1 18.6 172 3-174 8-180 (209)
9 PLN03110 Rab GTPase; Provision 100.0 6.2E-37 1.3E-41 231.4 26.6 207 3-211 9-215 (216)
10 KOG0086 GTPase Rab4, small G p 100.0 3.6E-38 7.8E-43 215.1 17.5 208 2-209 5-212 (214)
11 cd04121 Rab40 Rab40 subfamily. 100.0 2.6E-36 5.7E-41 222.9 24.3 170 2-172 2-171 (189)
12 KOG0091 GTPase Rab39, small G 100.0 2E-37 4.3E-42 213.7 16.8 206 3-211 5-213 (213)
13 cd04120 Rab12 Rab12 subfamily. 100.0 4.3E-36 9.4E-41 223.8 25.1 165 7-171 1-166 (202)
14 cd04110 Rab35 Rab35 subfamily. 100.0 1.3E-35 2.8E-40 221.7 25.5 177 2-179 2-178 (199)
15 KOG0079 GTP-binding protein H- 100.0 3.6E-37 7.8E-42 209.0 14.3 168 3-171 5-172 (198)
16 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 2.4E-35 5.3E-40 220.6 24.6 173 7-179 1-179 (201)
17 KOG0394 Ras-related GTPase [Ge 100.0 1.6E-36 3.4E-41 213.3 16.7 169 5-173 8-183 (210)
18 cd04111 Rab39 Rab39 subfamily. 100.0 5.7E-35 1.2E-39 219.8 25.7 189 5-193 1-191 (211)
19 KOG0095 GTPase Rab30, small G 100.0 1.8E-36 3.9E-41 206.1 15.1 174 2-175 3-176 (213)
20 KOG0093 GTPase Rab3, small G p 100.0 1E-35 2.2E-40 201.8 16.6 173 2-174 17-189 (193)
21 cd04125 RabA_like RabA-like su 100.0 2.1E-34 4.5E-39 213.4 24.9 168 7-174 1-168 (188)
22 cd04126 Rab20 Rab20 subfamily. 100.0 9.4E-35 2E-39 218.9 23.2 187 7-210 1-220 (220)
23 cd04122 Rab14 Rab14 subfamily. 100.0 1.3E-34 2.9E-39 210.3 23.0 165 5-169 1-165 (166)
24 cd04144 Ras2 Ras2 subfamily. 100.0 8.6E-35 1.9E-39 215.8 22.4 167 8-175 1-170 (190)
25 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2.7E-34 5.9E-39 217.6 25.0 168 4-173 11-193 (232)
26 KOG0097 GTPase Rab14, small G 100.0 5.5E-35 1.2E-39 197.4 18.4 207 2-209 7-213 (215)
27 cd04109 Rab28 Rab28 subfamily. 100.0 6.5E-34 1.4E-38 214.9 25.6 164 7-170 1-168 (215)
28 cd01867 Rab8_Rab10_Rab13_like 100.0 3.8E-34 8.1E-39 208.2 22.8 166 4-169 1-166 (167)
29 PTZ00369 Ras-like protein; Pro 100.0 3.5E-34 7.7E-39 212.3 22.9 170 4-174 3-173 (189)
30 cd04112 Rab26 Rab26 subfamily. 100.0 4.3E-34 9.4E-39 212.2 23.4 165 7-171 1-166 (191)
31 cd04127 Rab27A Rab27a subfamil 100.0 8.3E-34 1.8E-38 208.7 22.8 168 3-170 1-179 (180)
32 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 6.9E-34 1.5E-38 209.0 22.1 164 3-168 2-180 (182)
33 cd01866 Rab2 Rab2 subfamily. 100.0 1.7E-33 3.8E-38 204.9 23.3 167 3-169 1-167 (168)
34 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.8E-33 3.9E-38 204.3 22.9 164 5-168 1-164 (166)
35 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2E-33 4.3E-38 205.2 22.2 166 6-172 2-168 (172)
36 cd04133 Rop_like Rop subfamily 100.0 1.3E-33 2.9E-38 206.3 21.2 159 7-167 2-172 (176)
37 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.9E-33 6.2E-38 211.0 23.5 165 6-172 1-180 (222)
38 cd01865 Rab3 Rab3 subfamily. 100.0 4.2E-33 9.2E-38 202.2 23.2 162 7-168 2-163 (165)
39 cd04117 Rab15 Rab15 subfamily. 100.0 3.2E-33 6.9E-38 202.1 22.2 160 7-166 1-160 (161)
40 cd01868 Rab11_like Rab11-like. 100.0 5E-33 1.1E-37 201.7 23.0 164 4-167 1-164 (165)
41 cd04131 Rnd Rnd subfamily. Th 100.0 2.5E-33 5.5E-38 205.5 21.5 161 6-168 1-176 (178)
42 KOG0088 GTPase Rab21, small G 100.0 1E-34 2.2E-39 199.4 12.7 170 5-174 12-181 (218)
43 PF00071 Ras: Ras family; Int 100.0 4.7E-33 1E-37 201.2 22.3 161 8-168 1-161 (162)
44 cd04118 Rab24 Rab24 subfamily. 100.0 9.3E-33 2E-37 205.3 24.3 165 7-172 1-170 (193)
45 cd04119 RJL RJL (RabJ-Like) su 100.0 6.8E-33 1.5E-37 201.2 22.3 162 7-168 1-167 (168)
46 PLN03118 Rab family protein; P 100.0 3.1E-32 6.7E-37 205.3 25.9 167 3-170 11-179 (211)
47 cd01864 Rab19 Rab19 subfamily. 100.0 1.2E-32 2.5E-37 199.9 22.3 163 4-166 1-164 (165)
48 cd01875 RhoG RhoG subfamily. 100.0 1.1E-32 2.4E-37 204.6 22.5 163 5-169 2-178 (191)
49 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.5E-32 3.2E-37 202.2 22.0 162 7-169 1-167 (182)
50 cd04132 Rho4_like Rho4-like su 100.0 2.2E-32 4.7E-37 202.4 22.5 164 7-172 1-171 (187)
51 cd04113 Rab4 Rab4 subfamily. 100.0 2.5E-32 5.5E-37 197.3 22.0 160 7-166 1-160 (161)
52 smart00175 RAB Rab subfamily o 100.0 4.7E-32 1E-36 196.2 22.7 163 7-169 1-163 (164)
53 cd04136 Rap_like Rap-like subf 100.0 2.8E-32 6E-37 197.3 20.9 160 7-167 2-162 (163)
54 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 8.4E-32 1.8E-36 196.3 23.0 162 8-169 2-166 (170)
55 cd01874 Cdc42 Cdc42 subfamily. 100.0 5.5E-32 1.2E-36 198.1 21.2 160 6-167 1-174 (175)
56 cd04106 Rab23_lke Rab23-like s 100.0 8.5E-32 1.8E-36 194.6 21.4 159 7-166 1-161 (162)
57 cd04175 Rap1 Rap1 subgroup. T 100.0 8.3E-32 1.8E-36 195.2 21.4 160 7-167 2-162 (164)
58 cd00877 Ran Ran (Ras-related n 100.0 1.2E-31 2.6E-36 194.8 21.9 160 7-169 1-160 (166)
59 cd04116 Rab9 Rab9 subfamily. 100.0 1.9E-31 4.1E-36 194.4 22.6 163 3-166 2-169 (170)
60 PLN03071 GTP-binding nuclear p 100.0 1.1E-31 2.4E-36 203.0 21.7 165 4-171 11-175 (219)
61 KOG0081 GTPase Rab27, small G 100.0 6.4E-34 1.4E-38 195.5 8.2 173 2-174 5-187 (219)
62 cd04124 RabL2 RabL2 subfamily. 100.0 2.9E-31 6.3E-36 191.9 22.2 160 7-170 1-160 (161)
63 cd04140 ARHI_like ARHI subfami 100.0 2.2E-31 4.7E-36 193.2 21.5 159 7-166 2-163 (165)
64 smart00173 RAS Ras subfamily o 100.0 2.2E-31 4.8E-36 192.8 21.5 161 7-168 1-162 (164)
65 cd01861 Rab6 Rab6 subfamily. 100.0 3.3E-31 7.2E-36 191.3 22.1 160 7-166 1-160 (161)
66 cd04176 Rap2 Rap2 subgroup. T 100.0 2.1E-31 4.6E-36 192.8 21.0 160 7-167 2-162 (163)
67 cd01860 Rab5_related Rab5-rela 100.0 5E-31 1.1E-35 190.7 22.7 162 6-167 1-162 (163)
68 cd04115 Rab33B_Rab33A Rab33B/R 100.0 4.8E-31 1E-35 192.3 22.2 162 6-167 2-168 (170)
69 cd04138 H_N_K_Ras_like H-Ras/N 100.0 4.6E-31 1E-35 190.4 21.9 159 7-167 2-161 (162)
70 cd04145 M_R_Ras_like M-Ras/R-R 100.0 5.9E-31 1.3E-35 190.5 22.1 161 6-167 2-163 (164)
71 cd01871 Rac1_like Rac1-like su 100.0 3.7E-31 8.1E-36 193.6 20.9 158 7-166 2-173 (174)
72 cd04134 Rho3 Rho3 subfamily. 100.0 4.7E-31 1E-35 195.5 20.8 160 7-168 1-174 (189)
73 cd04123 Rab21 Rab21 subfamily. 100.0 1.4E-30 3E-35 187.9 22.3 161 7-167 1-161 (162)
74 cd04114 Rab30 Rab30 subfamily. 100.0 2.1E-30 4.6E-35 188.6 23.4 167 1-167 1-168 (169)
75 cd04142 RRP22 RRP22 subfamily. 100.0 7E-31 1.5E-35 195.7 21.0 167 7-173 1-179 (198)
76 cd01862 Rab7 Rab7 subfamily. 100.0 2.4E-30 5.2E-35 188.7 22.7 165 7-171 1-170 (172)
77 smart00176 RAN Ran (Ras-relate 100.0 1.4E-30 3E-35 193.9 21.3 156 12-170 1-156 (200)
78 cd04101 RabL4 RabL4 (Rab-like4 100.0 2E-30 4.2E-35 187.9 21.6 160 7-167 1-163 (164)
79 cd01892 Miro2 Miro2 subfamily. 100.0 1.4E-30 3E-35 189.7 19.6 163 4-168 2-166 (169)
80 cd01863 Rab18 Rab18 subfamily. 100.0 4.4E-30 9.5E-35 185.5 21.8 159 7-166 1-160 (161)
81 smart00174 RHO Rho (Ras homolo 100.0 2.3E-30 5.1E-35 189.3 20.0 158 9-168 1-172 (174)
82 cd01873 RhoBTB RhoBTB subfamil 100.0 2.4E-30 5.2E-35 192.1 19.8 158 6-166 2-194 (195)
83 cd00154 Rab Rab family. Rab G 100.0 6.6E-30 1.4E-34 183.3 21.3 158 7-164 1-158 (159)
84 cd04143 Rhes_like Rhes_like su 100.0 1.2E-29 2.5E-34 194.7 23.9 160 7-167 1-170 (247)
85 cd04177 RSR1 RSR1 subgroup. R 100.0 8.2E-30 1.8E-34 185.5 21.9 161 7-168 2-164 (168)
86 cd04103 Centaurin_gamma Centau 100.0 5.7E-30 1.2E-34 184.4 20.4 153 7-166 1-157 (158)
87 cd04146 RERG_RasL11_like RERG/ 100.0 3.9E-30 8.4E-35 186.6 19.5 160 8-168 1-164 (165)
88 cd04148 RGK RGK subfamily. Th 100.0 1.1E-29 2.3E-34 192.4 21.9 164 7-172 1-167 (221)
89 cd04135 Tc10 TC10 subfamily. 100.0 1.8E-29 3.9E-34 184.6 20.5 159 7-167 1-173 (174)
90 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3.1E-29 6.8E-34 183.3 21.0 157 7-165 1-171 (173)
91 KOG0083 GTPase Rab26/Rab37, sm 100.0 9.2E-32 2E-36 179.9 6.1 161 10-170 1-162 (192)
92 cd04139 RalA_RalB RalA/RalB su 100.0 6.5E-29 1.4E-33 179.6 21.5 161 7-168 1-162 (164)
93 cd00876 Ras Ras family. The R 100.0 7.9E-29 1.7E-33 178.4 20.2 158 8-166 1-159 (160)
94 cd04129 Rho2 Rho2 subfamily. 100.0 1.5E-28 3.2E-33 181.9 21.4 161 7-169 2-174 (187)
95 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.2E-28 2.7E-33 181.7 20.1 169 5-176 2-178 (183)
96 cd01870 RhoA_like RhoA-like su 100.0 3.9E-28 8.4E-33 177.7 20.9 159 7-167 2-174 (175)
97 cd04137 RheB Rheb (Ras Homolog 100.0 5.8E-28 1.3E-32 177.6 21.5 163 7-170 2-165 (180)
98 KOG4252 GTP-binding protein [S 100.0 6.8E-31 1.5E-35 184.1 5.5 172 2-174 16-187 (246)
99 cd04147 Ras_dva Ras-dva subfam 100.0 7.2E-28 1.6E-32 179.7 20.9 160 8-168 1-163 (198)
100 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 4.1E-29 8.9E-34 181.1 13.5 153 8-165 1-163 (164)
101 PTZ00132 GTP-binding nuclear p 100.0 2.2E-27 4.8E-32 179.3 23.0 167 1-170 4-170 (215)
102 PLN00223 ADP-ribosylation fact 100.0 3.1E-28 6.6E-33 179.2 17.8 159 4-169 15-179 (181)
103 cd00157 Rho Rho (Ras homology) 100.0 1.4E-27 3E-32 173.9 20.8 157 7-165 1-170 (171)
104 cd04149 Arf6 Arf6 subfamily. 100.0 3.1E-28 6.8E-33 177.1 17.3 155 4-165 7-167 (168)
105 cd04158 ARD1 ARD1 subfamily. 100.0 4.1E-28 8.8E-33 176.7 17.4 156 8-170 1-163 (169)
106 smart00177 ARF ARF-like small 100.0 2E-28 4.4E-33 179.3 15.1 157 4-167 11-173 (175)
107 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.7E-28 3.6E-33 177.1 14.0 152 7-165 1-158 (159)
108 KOG0395 Ras-related GTPase [Ge 100.0 1.4E-27 3E-32 176.6 19.1 167 5-172 2-169 (196)
109 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.6E-27 3.5E-32 177.4 19.5 148 7-154 1-176 (202)
110 PTZ00133 ADP-ribosylation fact 100.0 2.5E-27 5.4E-32 174.5 19.2 160 4-170 15-180 (182)
111 cd01893 Miro1 Miro1 subfamily. 100.0 4.3E-27 9.3E-32 170.8 19.5 160 7-169 1-165 (166)
112 cd04154 Arl2 Arl2 subfamily. 100.0 2.7E-27 5.9E-32 173.0 18.0 155 4-165 12-172 (173)
113 KOG0393 Ras-related small GTPa 100.0 6.9E-28 1.5E-32 174.8 11.7 167 4-172 2-183 (198)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2E-26 4.3E-31 168.6 17.9 155 4-165 13-173 (174)
115 cd04157 Arl6 Arl6 subfamily. 99.9 1.2E-26 2.5E-31 167.6 16.2 152 8-165 1-161 (162)
116 cd04161 Arl2l1_Arl13_like Arl2 99.9 6.8E-27 1.5E-31 170.0 14.1 151 8-165 1-166 (167)
117 PTZ00099 rab6; Provisional 99.9 1.2E-25 2.6E-30 164.4 20.1 141 29-169 3-143 (176)
118 PLN00023 GTP-binding protein; 99.9 1.1E-25 2.4E-30 175.5 20.9 140 4-143 19-189 (334)
119 cd00879 Sar1 Sar1 subfamily. 99.9 4.1E-26 8.8E-31 169.2 17.6 157 3-166 16-189 (190)
120 cd04156 ARLTS1 ARLTS1 subfamil 99.9 2.3E-26 4.9E-31 165.9 15.3 152 8-165 1-159 (160)
121 cd00878 Arf_Arl Arf (ADP-ribos 99.9 3.6E-26 7.7E-31 164.6 15.5 151 8-165 1-157 (158)
122 cd04160 Arfrp1 Arfrp1 subfamil 99.9 7.5E-26 1.6E-30 164.3 17.1 152 8-165 1-166 (167)
123 cd04151 Arl1 Arl1 subfamily. 99.9 9.5E-26 2.1E-30 162.4 16.8 151 8-165 1-157 (158)
124 PF00025 Arf: ADP-ribosylation 99.9 9.2E-26 2E-30 165.1 16.9 159 2-167 10-175 (175)
125 smart00178 SAR Sar1p-like memb 99.9 3.8E-25 8.3E-30 163.2 17.6 157 3-166 14-183 (184)
126 KOG0073 GTP-binding ADP-ribosy 99.9 9.2E-25 2E-29 151.2 16.4 160 4-170 14-180 (185)
127 cd04159 Arl10_like Arl10-like 99.9 5.9E-25 1.3E-29 157.6 15.7 152 8-165 1-158 (159)
128 cd01890 LepA LepA subfamily. 99.9 1.1E-24 2.4E-29 159.8 17.0 154 8-167 2-176 (179)
129 cd01897 NOG NOG1 is a nucleola 99.9 1.3E-24 2.8E-29 157.9 16.6 156 7-167 1-167 (168)
130 cd01898 Obg Obg subfamily. Th 99.9 2E-24 4.3E-29 157.2 15.7 157 8-166 2-169 (170)
131 TIGR00231 small_GTP small GTP- 99.9 1E-23 2.2E-28 150.8 19.2 158 6-164 1-160 (161)
132 cd01878 HflX HflX subfamily. 99.9 2.1E-24 4.5E-29 161.8 15.6 156 4-166 39-203 (204)
133 PRK12299 obgE GTPase CgtA; Rev 99.9 9.1E-24 2E-28 168.1 18.7 163 6-169 158-329 (335)
134 cd04171 SelB SelB subfamily. 99.9 8.7E-24 1.9E-28 152.7 16.5 152 7-165 1-163 (164)
135 cd04155 Arl3 Arl3 subfamily. 99.9 3.6E-23 7.7E-28 151.1 18.8 154 5-165 13-172 (173)
136 COG1100 GTPase SAR1 and relate 99.9 6.5E-23 1.4E-27 155.2 20.8 170 6-175 5-192 (219)
137 TIGR02528 EutP ethanolamine ut 99.9 1.1E-23 2.4E-28 149.0 13.2 134 8-164 2-141 (142)
138 KOG0070 GTP-binding ADP-ribosy 99.9 2.5E-23 5.3E-28 147.6 14.4 159 4-169 15-179 (181)
139 cd00882 Ras_like_GTPase Ras-li 99.9 1.1E-22 2.5E-27 144.0 18.0 153 11-164 1-156 (157)
140 cd01879 FeoB Ferrous iron tran 99.9 5.8E-23 1.2E-27 147.6 16.4 147 11-166 1-155 (158)
141 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 6.4E-23 1.4E-27 148.8 16.3 156 8-167 2-165 (168)
142 cd01891 TypA_BipA TypA (tyrosi 99.9 3.5E-23 7.7E-28 154.0 13.8 149 7-159 3-173 (194)
143 TIGR02729 Obg_CgtA Obg family 99.9 2.2E-22 4.7E-27 160.1 18.0 160 6-167 157-328 (329)
144 PF02421 FeoB_N: Ferrous iron 99.9 3.6E-23 7.8E-28 146.6 11.8 148 7-163 1-156 (156)
145 TIGR03156 GTP_HflX GTP-binding 99.9 1.9E-22 4.2E-27 161.8 17.5 154 5-166 188-350 (351)
146 KOG3883 Ras family small GTPas 99.9 3E-22 6.5E-27 137.2 15.7 173 5-177 8-184 (198)
147 PRK04213 GTP-binding protein; 99.9 3.2E-23 6.9E-28 155.0 11.4 151 5-168 8-192 (201)
148 TIGR00436 era GTP-binding prot 99.9 3.2E-22 6.9E-27 156.0 16.1 153 8-167 2-163 (270)
149 PF08477 Miro: Miro-like prote 99.9 2.4E-22 5.3E-27 137.9 13.7 114 8-122 1-119 (119)
150 cd01881 Obg_like The Obg-like 99.9 3.5E-22 7.7E-27 146.0 13.8 155 11-166 1-175 (176)
151 cd04164 trmE TrmE (MnmE, ThdF, 99.9 7E-22 1.5E-26 141.5 15.0 146 7-167 2-156 (157)
152 PRK15494 era GTPase Era; Provi 99.9 6.9E-22 1.5E-26 158.3 16.1 156 4-169 50-217 (339)
153 PRK03003 GTP-binding protein D 99.9 8.3E-22 1.8E-26 164.5 16.2 154 5-169 37-200 (472)
154 cd00881 GTP_translation_factor 99.9 1.6E-21 3.6E-26 143.9 15.6 156 8-167 1-186 (189)
155 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3.4E-21 7.3E-26 158.8 18.9 154 5-172 202-364 (442)
156 PRK15467 ethanolamine utilizat 99.9 1.5E-21 3.2E-26 140.5 14.3 143 8-172 3-151 (158)
157 TIGR01393 lepA GTP-binding pro 99.9 3E-21 6.5E-26 164.2 17.6 156 6-167 3-179 (595)
158 cd01894 EngA1 EngA1 subfamily. 99.9 1.2E-21 2.7E-26 140.4 12.9 146 10-166 1-156 (157)
159 cd01889 SelB_euk SelB subfamil 99.9 1.7E-21 3.6E-26 144.8 13.7 157 7-167 1-185 (192)
160 PRK11058 GTPase HflX; Provisio 99.9 3.9E-21 8.6E-26 157.5 17.1 158 7-170 198-364 (426)
161 PRK12297 obgE GTPase CgtA; Rev 99.9 1.3E-20 2.7E-25 153.8 19.9 159 7-170 159-329 (424)
162 KOG0075 GTP-binding ADP-ribosy 99.9 9.3E-22 2E-26 133.9 10.5 154 6-168 20-182 (186)
163 PRK00454 engB GTP-binding prot 99.9 8.3E-21 1.8E-25 141.3 16.5 158 3-167 21-193 (196)
164 PRK05291 trmE tRNA modificatio 99.9 4.6E-21 9.9E-26 158.7 16.4 149 5-169 214-371 (449)
165 PRK03003 GTP-binding protein D 99.9 5.4E-21 1.2E-25 159.7 16.6 158 5-168 210-382 (472)
166 TIGR00487 IF-2 translation ini 99.9 2E-20 4.4E-25 158.5 20.1 153 5-165 86-247 (587)
167 KOG0071 GTP-binding ADP-ribosy 99.9 1.3E-20 2.8E-25 127.4 14.5 156 5-167 16-177 (180)
168 TIGR03598 GTPase_YsxC ribosome 99.9 6.6E-21 1.4E-25 140.0 14.2 150 1-157 13-179 (179)
169 cd01888 eIF2_gamma eIF2-gamma 99.9 4.8E-21 1E-25 143.4 13.7 159 7-167 1-198 (203)
170 PRK12296 obgE GTPase CgtA; Rev 99.9 1.3E-20 2.9E-25 155.6 17.3 163 6-171 159-343 (500)
171 TIGR03594 GTPase_EngA ribosome 99.9 1.5E-20 3.3E-25 155.7 17.7 158 5-169 171-345 (429)
172 cd01895 EngA2 EngA2 subfamily. 99.9 2E-20 4.3E-25 136.0 15.8 155 6-166 2-173 (174)
173 cd04163 Era Era subfamily. Er 99.9 1.9E-20 4.1E-25 135.1 15.5 156 6-166 3-167 (168)
174 KOG1673 Ras GTPases [General f 99.9 4.7E-21 1E-25 131.7 10.0 163 6-169 20-187 (205)
175 PRK00089 era GTPase Era; Revie 99.9 2.9E-20 6.3E-25 146.7 15.4 159 5-168 4-171 (292)
176 PRK00093 GTP-binding protein D 99.9 6.3E-20 1.4E-24 152.3 18.0 146 7-165 2-159 (435)
177 PRK12298 obgE GTPase CgtA; Rev 99.9 8.6E-20 1.9E-24 148.1 18.2 163 6-170 159-335 (390)
178 COG1159 Era GTPase [General fu 99.8 3.7E-20 8.1E-25 141.2 14.6 161 4-169 4-173 (298)
179 TIGR00475 selB selenocysteine- 99.8 6E-20 1.3E-24 156.2 17.4 155 7-170 1-168 (581)
180 TIGR03594 GTPase_EngA ribosome 99.8 3E-20 6.5E-25 154.0 15.2 151 8-169 1-161 (429)
181 PRK05433 GTP-binding protein L 99.8 6.4E-20 1.4E-24 156.3 17.1 162 1-168 2-184 (600)
182 CHL00189 infB translation init 99.8 7.8E-20 1.7E-24 157.3 17.0 156 5-167 243-409 (742)
183 PRK09518 bifunctional cytidyla 99.8 8.3E-20 1.8E-24 159.2 17.3 155 5-169 274-437 (712)
184 PRK05306 infB translation init 99.8 1.7E-19 3.8E-24 156.4 18.4 152 5-165 289-449 (787)
185 KOG4423 GTP-binding protein-li 99.8 8.5E-23 1.8E-27 144.3 -2.4 172 2-173 21-199 (229)
186 TIGR00437 feoB ferrous iron tr 99.8 1.5E-19 3.3E-24 153.9 16.8 146 13-167 1-154 (591)
187 KOG0076 GTP-binding ADP-ribosy 99.8 1.6E-20 3.5E-25 131.4 8.9 161 4-170 15-189 (197)
188 cd00880 Era_like Era (E. coli 99.8 1.3E-19 2.9E-24 129.5 14.0 151 11-166 1-162 (163)
189 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 2.3E-20 4.9E-25 132.5 9.3 163 6-171 10-172 (216)
190 PF00009 GTP_EFTU: Elongation 99.8 2.4E-20 5.2E-25 138.1 9.2 159 5-167 2-186 (188)
191 PRK00093 GTP-binding protein D 99.8 2.5E-19 5.3E-24 148.8 16.2 157 5-169 172-345 (435)
192 PRK09554 feoB ferrous iron tra 99.8 6.7E-19 1.5E-23 153.3 18.8 153 6-167 3-167 (772)
193 TIGR00491 aIF-2 translation in 99.8 1.6E-18 3.4E-23 146.9 18.6 159 6-171 4-219 (590)
194 cd04105 SR_beta Signal recogni 99.8 9.4E-19 2E-23 130.9 15.0 117 8-125 2-123 (203)
195 COG2229 Predicted GTPase [Gene 99.8 4.1E-18 8.8E-23 121.0 17.0 157 4-166 8-176 (187)
196 COG1160 Predicted GTPases [Gen 99.8 4.6E-19 9.9E-24 142.3 13.7 149 7-168 4-165 (444)
197 PRK12317 elongation factor 1-a 99.8 3.7E-19 8.1E-24 147.1 13.3 159 1-161 1-198 (425)
198 cd01876 YihA_EngB The YihA (En 99.8 1E-18 2.2E-23 126.4 14.1 150 8-166 1-169 (170)
199 PRK09518 bifunctional cytidyla 99.8 2.5E-18 5.5E-23 149.9 18.6 157 5-169 449-622 (712)
200 cd01896 DRG The developmentall 99.8 7.1E-18 1.5E-22 128.6 18.2 151 8-167 2-225 (233)
201 cd04168 TetM_like Tet(M)-like 99.8 5.1E-18 1.1E-22 129.6 16.0 113 8-124 1-129 (237)
202 PRK10218 GTP-binding protein; 99.8 5.2E-18 1.1E-22 144.2 17.5 159 5-167 4-194 (607)
203 TIGR01394 TypA_BipA GTP-bindin 99.8 1.8E-18 3.8E-23 147.1 14.5 156 8-167 3-190 (594)
204 TIGR00483 EF-1_alpha translati 99.8 1.7E-18 3.7E-23 143.1 13.9 154 5-160 6-199 (426)
205 cd04166 CysN_ATPS CysN_ATPS su 99.8 1.8E-18 4E-23 129.9 12.7 149 8-159 1-185 (208)
206 KOG0074 GTP-binding ADP-ribosy 99.8 1.4E-18 3E-23 117.8 10.4 156 4-165 15-176 (185)
207 COG0486 ThdF Predicted GTPase 99.8 4.7E-18 1E-22 136.8 14.4 154 5-170 216-378 (454)
208 COG1160 Predicted GTPases [Gen 99.8 9E-18 2E-22 134.9 15.9 160 5-169 177-352 (444)
209 COG0218 Predicted GTPase [Gene 99.8 1.4E-17 3E-22 120.7 15.2 160 2-169 20-198 (200)
210 PF10662 PduV-EutP: Ethanolami 99.8 7.1E-18 1.5E-22 117.1 12.5 135 8-164 3-142 (143)
211 TIGR03680 eif2g_arch translati 99.8 4.8E-18 1E-22 139.4 13.5 161 5-167 3-195 (406)
212 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.2E-17 4.8E-22 122.5 15.4 148 6-157 2-172 (195)
213 KOG0072 GTP-binding ADP-ribosy 99.8 5.4E-19 1.2E-23 120.1 6.1 162 4-170 16-181 (182)
214 PRK04004 translation initiatio 99.8 4.6E-17 9.9E-22 138.5 19.2 160 5-171 5-221 (586)
215 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 4.9E-18 1.1E-22 128.1 11.4 162 8-172 1-180 (232)
216 PRK04000 translation initiatio 99.8 1.1E-17 2.4E-22 137.3 13.9 161 4-167 7-200 (411)
217 PRK10512 selenocysteinyl-tRNA- 99.8 3.4E-17 7.3E-22 140.0 17.2 156 7-167 1-165 (614)
218 cd04167 Snu114p Snu114p subfam 99.8 1.3E-17 2.9E-22 125.7 12.6 113 8-124 2-136 (213)
219 COG2262 HflX GTPases [General 99.8 7.7E-17 1.7E-21 127.8 16.6 162 5-173 191-361 (411)
220 cd01883 EF1_alpha Eukaryotic e 99.8 6.2E-18 1.3E-22 128.0 9.9 148 8-157 1-194 (219)
221 KOG1489 Predicted GTP-binding 99.7 7.5E-17 1.6E-21 123.6 14.2 156 7-166 197-365 (366)
222 PRK12736 elongation factor Tu; 99.7 1.2E-16 2.6E-21 130.7 15.1 146 5-154 11-179 (394)
223 cd04169 RF3 RF3 subfamily. Pe 99.7 2.4E-16 5.2E-21 122.4 15.5 115 7-125 3-137 (267)
224 cd04104 p47_IIGP_like p47 (47- 99.7 3.2E-16 6.9E-21 116.8 15.6 159 6-172 1-188 (197)
225 COG0370 FeoB Fe2+ transport sy 99.7 2.2E-16 4.9E-21 132.3 15.9 156 6-170 3-166 (653)
226 COG1084 Predicted GTPase [Gene 99.7 4.6E-16 9.9E-21 120.1 15.0 159 5-169 167-337 (346)
227 cd04165 GTPBP1_like GTPBP1-lik 99.7 2.8E-16 6E-21 119.0 13.7 153 8-164 1-219 (224)
228 KOG1423 Ras-like GTPase ERA [C 99.7 3.3E-16 7.2E-21 119.5 14.0 159 5-167 71-270 (379)
229 TIGR00485 EF-Tu translation el 99.7 2.9E-16 6.2E-21 128.6 14.6 147 4-154 10-179 (394)
230 PRK12735 elongation factor Tu; 99.7 4.3E-16 9.4E-21 127.6 15.3 147 5-155 11-180 (396)
231 KOG1707 Predicted Ras related/ 99.7 1.7E-16 3.7E-21 130.1 10.7 162 5-168 8-175 (625)
232 CHL00071 tufA elongation facto 99.7 1.2E-15 2.5E-20 125.5 15.8 149 4-156 10-181 (409)
233 cd01885 EF2 EF2 (for archaea a 99.7 5.8E-16 1.3E-20 116.8 12.7 113 8-124 2-138 (222)
234 cd04170 EF-G_bact Elongation f 99.7 1.5E-16 3.1E-21 124.1 9.7 115 8-126 1-131 (268)
235 cd01886 EF-G Elongation factor 99.7 3.3E-16 7.2E-21 121.7 11.6 114 8-125 1-130 (270)
236 cd01850 CDC_Septin CDC/Septin. 99.7 6.4E-16 1.4E-20 120.5 12.4 143 5-151 3-185 (276)
237 PRK00741 prfC peptide chain re 99.7 2.2E-15 4.7E-20 126.8 16.0 116 5-124 9-144 (526)
238 TIGR02034 CysN sulfate adenyly 99.7 1.1E-15 2.5E-20 125.4 13.2 150 7-159 1-188 (406)
239 KOG0462 Elongation factor-type 99.7 1.6E-15 3.5E-20 123.6 13.4 162 2-167 56-234 (650)
240 COG0532 InfB Translation initi 99.7 9.3E-15 2E-19 119.5 17.8 178 5-191 4-191 (509)
241 PRK05124 cysN sulfate adenylyl 99.7 1.6E-15 3.4E-20 126.5 13.6 154 4-160 25-217 (474)
242 PRK13351 elongation factor G; 99.7 3.1E-15 6.6E-20 130.5 15.4 119 3-125 5-139 (687)
243 PLN03126 Elongation factor Tu; 99.7 5.3E-15 1.2E-19 123.0 15.6 147 5-155 80-249 (478)
244 PLN00043 elongation factor 1-a 99.7 5E-15 1.1E-19 122.6 15.3 150 5-158 6-203 (447)
245 COG1163 DRG Predicted GTPase [ 99.7 1.4E-14 3E-19 111.7 16.3 154 5-167 62-288 (365)
246 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 6.2E-15 1.3E-19 109.8 14.3 159 7-169 1-185 (196)
247 COG3596 Predicted GTPase [Gene 99.6 2.3E-15 5E-20 113.7 11.6 159 5-168 38-222 (296)
248 PRK00049 elongation factor Tu; 99.6 8.5E-15 1.8E-19 119.9 15.9 146 5-154 11-179 (396)
249 COG0536 Obg Predicted GTPase [ 99.6 6.6E-15 1.4E-19 114.2 13.7 164 7-171 160-336 (369)
250 cd01899 Ygr210 Ygr210 subfamil 99.6 9.7E-15 2.1E-19 115.6 14.7 81 9-89 1-110 (318)
251 PF01926 MMR_HSR1: 50S ribosom 99.6 1.7E-14 3.7E-19 98.4 13.6 106 8-120 1-116 (116)
252 PTZ00141 elongation factor 1- 99.6 1E-14 2.2E-19 120.8 14.2 151 5-158 6-203 (446)
253 PRK05506 bifunctional sulfate 99.6 1.1E-14 2.3E-19 125.9 14.5 152 4-158 22-211 (632)
254 PLN03127 Elongation factor Tu; 99.6 2.3E-14 5.1E-19 118.6 15.7 143 5-151 60-225 (447)
255 PF09439 SRPRB: Signal recogni 99.6 1.6E-15 3.5E-20 109.9 7.4 116 6-125 3-126 (181)
256 KOG1145 Mitochondrial translat 99.6 6.8E-14 1.5E-18 114.3 16.1 153 5-165 152-313 (683)
257 PTZ00327 eukaryotic translatio 99.6 2E-14 4.3E-19 118.9 12.8 162 4-167 32-232 (460)
258 PRK12739 elongation factor G; 99.6 4.6E-14 9.9E-19 123.1 15.6 118 4-125 6-139 (691)
259 TIGR00484 EF-G translation elo 99.6 4.7E-14 1E-18 123.0 14.8 117 5-125 9-141 (689)
260 TIGR00503 prfC peptide chain r 99.6 4.7E-14 1E-18 118.8 14.2 118 4-125 9-146 (527)
261 PRK09866 hypothetical protein; 99.6 3.2E-13 7E-18 113.4 18.2 108 56-165 231-350 (741)
262 KOG1191 Mitochondrial GTPase [ 99.6 1.9E-14 4.1E-19 116.3 10.5 166 5-172 267-454 (531)
263 COG4917 EutP Ethanolamine util 99.6 2.2E-14 4.7E-19 95.6 8.2 136 8-165 3-143 (148)
264 COG0481 LepA Membrane GTPase L 99.6 2.2E-13 4.8E-18 109.8 14.8 159 3-167 6-185 (603)
265 PRK09602 translation-associate 99.5 4.4E-13 9.5E-18 109.3 16.4 83 7-89 2-113 (396)
266 COG5256 TEF1 Translation elong 99.5 1E-13 2.2E-18 110.2 11.3 155 4-160 5-203 (428)
267 KOG0077 Vesicle coat complex C 99.5 4E-14 8.6E-19 98.8 7.0 156 4-166 18-191 (193)
268 cd00066 G-alpha G protein alph 99.5 5.9E-13 1.3E-17 106.0 14.5 121 51-171 157-314 (317)
269 KOG1490 GTP-binding protein CR 99.5 1.2E-13 2.6E-18 111.8 10.4 165 5-172 167-345 (620)
270 PRK00007 elongation factor G; 99.5 5E-13 1.1E-17 116.6 14.1 118 4-125 8-141 (693)
271 PRK12740 elongation factor G; 99.5 7.1E-13 1.5E-17 115.6 14.3 109 12-124 1-125 (668)
272 cd01853 Toc34_like Toc34-like 99.5 1.1E-12 2.4E-17 100.7 13.2 119 4-125 29-163 (249)
273 PF04548 AIG1: AIG1 family; I 99.5 5.7E-13 1.2E-17 100.3 11.2 161 7-171 1-189 (212)
274 TIGR00490 aEF-2 translation el 99.5 6.1E-13 1.3E-17 116.4 12.9 117 4-124 17-151 (720)
275 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.1E-12 4.5E-17 100.9 14.3 125 5-131 37-173 (313)
276 KOG1532 GTPase XAB1, interacts 99.5 2.9E-13 6.2E-18 102.2 8.3 169 4-172 17-268 (366)
277 smart00275 G_alpha G protein a 99.4 3.7E-12 8E-17 102.3 14.3 118 54-171 183-337 (342)
278 KOG0090 Signal recognition par 99.4 7.5E-13 1.6E-17 96.4 8.8 114 6-124 38-158 (238)
279 PRK14845 translation initiatio 99.4 1.1E-11 2.4E-16 110.6 17.3 145 17-168 472-673 (1049)
280 TIGR00157 ribosome small subun 99.4 7.5E-13 1.6E-17 101.7 8.3 96 66-165 24-120 (245)
281 PTZ00258 GTP-binding protein; 99.4 9.8E-12 2.1E-16 100.6 14.9 85 5-89 20-126 (390)
282 TIGR00101 ureG urease accessor 99.4 1.7E-11 3.6E-16 91.3 13.7 102 55-167 92-195 (199)
283 KOG3905 Dynein light intermedi 99.4 3.2E-11 6.9E-16 93.3 15.0 160 6-168 52-290 (473)
284 COG1217 TypA Predicted membran 99.4 7.9E-12 1.7E-16 100.7 12.0 166 6-175 5-198 (603)
285 PRK07560 elongation factor EF- 99.4 1.9E-11 4.2E-16 107.3 14.9 117 4-124 18-152 (731)
286 KOG1707 Predicted Ras related/ 99.4 2.7E-11 5.8E-16 100.0 14.0 160 4-168 423-583 (625)
287 PRK13768 GTPase; Provisional 99.3 1.5E-11 3.3E-16 94.9 11.6 110 56-167 98-246 (253)
288 PLN00116 translation elongatio 99.3 6.5E-12 1.4E-16 111.6 10.4 118 3-124 16-163 (843)
289 PF05049 IIGP: Interferon-indu 99.3 1.4E-11 3E-16 98.7 11.2 157 5-169 34-219 (376)
290 COG5257 GCD11 Translation init 99.3 3.4E-12 7.4E-17 98.5 7.2 162 5-168 9-202 (415)
291 COG2895 CysN GTPases - Sulfate 99.3 2.6E-11 5.7E-16 94.7 11.6 153 3-158 3-193 (431)
292 smart00010 small_GTPase Small 99.3 3.2E-11 6.8E-16 82.8 11.0 114 7-157 1-115 (124)
293 PRK09435 membrane ATPase/prote 99.3 1.9E-11 4.2E-16 97.1 11.2 114 54-178 148-270 (332)
294 KOG3887 Predicted small GTPase 99.3 1.3E-11 2.8E-16 91.8 9.4 163 7-172 28-206 (347)
295 PTZ00416 elongation factor 2; 99.3 1.2E-11 2.5E-16 109.9 10.9 117 4-124 17-157 (836)
296 TIGR00073 hypB hydrogenase acc 99.3 2.3E-11 5.1E-16 91.3 10.9 152 5-167 21-206 (207)
297 PRK09601 GTP-binding protein Y 99.3 1.7E-10 3.6E-15 92.5 15.7 83 7-89 3-107 (364)
298 cd01882 BMS1 Bms1. Bms1 is an 99.3 1.6E-10 3.5E-15 87.8 14.8 139 5-155 38-183 (225)
299 PF03029 ATP_bind_1: Conserved 99.3 2.5E-12 5.5E-17 98.1 4.6 112 56-167 92-236 (238)
300 KOG0082 G-protein alpha subuni 99.3 1.4E-10 3E-15 92.0 14.5 127 47-173 187-349 (354)
301 TIGR02836 spore_IV_A stage IV 99.3 2.8E-10 6E-15 91.6 16.3 161 5-172 16-237 (492)
302 PF05783 DLIC: Dynein light in 99.3 1.1E-10 2.4E-15 96.7 14.5 160 7-169 26-265 (472)
303 KOG3886 GTP-binding protein [S 99.3 8.3E-12 1.8E-16 92.1 6.9 145 6-152 4-163 (295)
304 PF00350 Dynamin_N: Dynamin fa 99.3 5.4E-11 1.2E-15 86.3 11.3 62 57-121 103-168 (168)
305 COG0480 FusA Translation elong 99.2 8.7E-11 1.9E-15 101.3 11.0 119 2-124 6-141 (697)
306 KOG0461 Selenocysteine-specifi 99.2 4.5E-10 9.7E-15 87.7 13.3 159 4-167 5-192 (522)
307 PF00735 Septin: Septin; Inte 99.2 6.1E-10 1.3E-14 87.1 13.8 141 5-149 3-182 (281)
308 smart00053 DYNc Dynamin, GTPas 99.2 3.8E-10 8.1E-15 86.0 11.5 118 5-125 25-206 (240)
309 KOG0458 Elongation factor 1 al 99.2 2.3E-10 5E-15 94.6 10.9 153 5-159 176-373 (603)
310 TIGR00993 3a0901s04IAP86 chlor 99.2 1.1E-09 2.4E-14 92.8 15.1 120 4-125 116-250 (763)
311 KOG1144 Translation initiation 99.2 1.5E-10 3.2E-15 98.0 9.6 168 6-177 475-696 (1064)
312 COG4108 PrfC Peptide chain rel 99.2 4.7E-10 1E-14 90.1 11.7 134 5-144 11-164 (528)
313 TIGR00750 lao LAO/AO transport 99.2 3.7E-10 7.9E-15 89.5 10.5 104 54-168 126-238 (300)
314 COG0378 HypB Ni2+-binding GTPa 99.1 2.8E-10 6.1E-15 82.3 8.6 149 7-167 14-200 (202)
315 KOG0410 Predicted GTP binding 99.1 1.3E-10 2.9E-15 89.9 6.2 156 5-172 177-345 (410)
316 COG0050 TufB GTPases - transla 99.1 6.4E-10 1.4E-14 85.1 8.8 169 5-177 11-206 (394)
317 KOG0468 U5 snRNP-specific prot 99.1 1.1E-09 2.3E-14 91.9 10.8 117 3-123 125-261 (971)
318 COG0012 Predicted GTPase, prob 99.1 9.2E-09 2E-13 81.7 15.3 84 6-89 2-108 (372)
319 COG5019 CDC3 Septin family pro 99.1 2.9E-09 6.3E-14 84.0 12.1 162 5-172 22-223 (373)
320 KOG1486 GTP-binding protein DR 99.1 1.1E-08 2.4E-13 76.9 14.3 86 6-93 62-154 (364)
321 COG3276 SelB Selenocysteine-sp 99.0 4E-09 8.6E-14 85.0 11.9 157 8-168 2-162 (447)
322 KOG1547 Septin CDC10 and relat 99.0 1.6E-09 3.5E-14 80.7 8.7 150 1-155 41-230 (336)
323 cd01900 YchF YchF subfamily. 99.0 9.9E-10 2.2E-14 85.3 7.6 81 9-89 1-103 (274)
324 cd01855 YqeH YqeH. YqeH is an 99.0 3.5E-09 7.5E-14 78.4 10.2 93 68-167 24-124 (190)
325 PF00503 G-alpha: G-protein al 99.0 5.7E-09 1.2E-13 85.7 11.5 115 53-167 234-389 (389)
326 KOG2655 Septin family protein 99.0 6.7E-09 1.5E-13 82.5 11.1 161 5-172 20-218 (366)
327 PRK12289 GTPase RsgA; Reviewed 99.0 2.2E-09 4.8E-14 86.3 8.4 91 70-165 81-172 (352)
328 KOG0705 GTPase-activating prot 99.0 3.1E-09 6.7E-14 87.5 9.1 161 6-173 30-194 (749)
329 PRK10463 hydrogenase nickel in 99.0 2.4E-09 5.3E-14 83.2 7.3 56 111-166 230-287 (290)
330 COG1703 ArgK Putative periplas 98.9 6.6E-09 1.4E-13 80.0 8.7 111 54-176 143-262 (323)
331 cd01854 YjeQ_engC YjeQ/EngC. 98.9 5.5E-09 1.2E-13 82.2 8.2 88 72-164 72-160 (287)
332 PF03308 ArgK: ArgK protein; 98.9 6.8E-10 1.5E-14 84.2 2.8 111 55-177 122-239 (266)
333 PRK12288 GTPase RsgA; Reviewed 98.9 7E-09 1.5E-13 83.4 8.7 88 75-165 117-205 (347)
334 cd01859 MJ1464 MJ1464. This f 98.9 5.8E-09 1.3E-13 74.7 7.4 95 68-168 2-96 (156)
335 KOG0448 Mitofusin 1 GTPase, in 98.9 7.3E-08 1.6E-12 81.4 13.8 143 5-151 108-309 (749)
336 PRK00098 GTPase RsgA; Reviewed 98.9 9.2E-09 2E-13 81.4 8.0 87 73-163 75-162 (298)
337 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 9.1E-09 2E-13 72.5 6.4 54 8-65 85-138 (141)
338 cd04178 Nucleostemin_like Nucl 98.8 2.4E-08 5.1E-13 72.7 6.9 56 5-64 116-171 (172)
339 cd01858 NGP_1 NGP-1. Autoanti 98.8 3.1E-08 6.7E-13 71.1 7.3 56 5-64 101-156 (157)
340 cd01849 YlqF_related_GTPase Yl 98.8 4.9E-08 1.1E-12 69.9 8.0 114 80-197 1-115 (155)
341 cd01856 YlqF YlqF. Proteins o 98.7 7.1E-08 1.5E-12 70.2 7.9 92 69-168 10-101 (171)
342 TIGR03597 GTPase_YqeH ribosome 98.7 9.6E-08 2.1E-12 77.5 9.1 95 65-166 50-151 (360)
343 KOG1954 Endocytosis/signaling 98.7 1.9E-07 4.2E-12 73.9 10.2 121 3-126 55-226 (532)
344 cd01858 NGP_1 NGP-1. Autoanti 98.7 1E-07 2.2E-12 68.4 8.0 91 74-167 4-94 (157)
345 KOG2486 Predicted GTPase [Gene 98.7 5.5E-08 1.2E-12 74.2 6.4 156 4-166 134-314 (320)
346 cd01856 YlqF YlqF. Proteins o 98.7 8.3E-08 1.8E-12 69.9 7.0 57 5-65 114-170 (171)
347 KOG0460 Mitochondrial translat 98.7 2.4E-07 5.2E-12 72.6 9.7 170 6-179 54-252 (449)
348 TIGR00092 GTP-binding protein 98.7 1.4E-07 3.1E-12 75.9 8.8 83 7-89 3-108 (368)
349 KOG0447 Dynamin-like GTP bindi 98.6 1.7E-06 3.6E-11 72.0 13.9 135 3-140 305-508 (980)
350 TIGR03596 GTPase_YlqF ribosome 98.6 1.6E-07 3.4E-12 73.7 7.6 57 5-65 117-173 (276)
351 cd01855 YqeH YqeH. YqeH is an 98.6 9.7E-08 2.1E-12 70.7 6.1 56 6-64 127-189 (190)
352 TIGR03348 VI_IcmF type VI secr 98.6 5E-07 1.1E-11 83.5 11.9 112 9-125 114-257 (1169)
353 KOG0085 G protein subunit Galp 98.6 2.7E-08 5.9E-13 73.9 2.9 125 48-172 192-353 (359)
354 cd01859 MJ1464 MJ1464. This f 98.6 1.8E-07 3.9E-12 67.0 7.2 56 5-64 100-155 (156)
355 PRK09563 rbgA GTPase YlqF; Rev 98.6 2.3E-07 4.9E-12 73.1 8.2 58 5-66 120-177 (287)
356 KOG0466 Translation initiation 98.6 1.6E-08 3.5E-13 78.0 1.5 166 1-168 33-241 (466)
357 KOG0464 Elongation factor G [T 98.6 7E-08 1.5E-12 77.5 5.0 116 6-125 37-168 (753)
358 KOG1491 Predicted GTP-binding 98.6 4E-07 8.6E-12 71.4 8.2 85 5-89 19-125 (391)
359 COG1161 Predicted GTPases [Gen 98.5 2E-07 4.4E-12 74.5 6.5 57 6-66 132-188 (322)
360 cd01851 GBP Guanylate-binding 98.5 2.3E-06 5E-11 65.0 11.9 86 5-91 6-104 (224)
361 KOG0467 Translation elongation 98.5 4.8E-07 1E-11 77.4 8.5 118 1-122 4-135 (887)
362 TIGR03596 GTPase_YlqF ribosome 98.5 7.9E-07 1.7E-11 69.7 9.2 100 63-170 5-105 (276)
363 KOG1487 GTP-binding protein DR 98.5 1.6E-06 3.4E-11 65.8 9.9 85 7-93 60-151 (358)
364 KOG0099 G protein subunit Galp 98.5 4.7E-07 1E-11 68.6 6.9 121 50-170 197-371 (379)
365 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 6.8E-07 1.5E-11 62.9 6.7 78 72-155 5-84 (141)
366 COG5258 GTPBP1 GTPase [General 98.5 1.9E-06 4.1E-11 68.8 9.7 152 4-159 115-330 (527)
367 PF09547 Spore_IV_A: Stage IV 98.4 1.1E-05 2.3E-10 65.5 13.9 161 5-172 16-237 (492)
368 cd01849 YlqF_related_GTPase Yl 98.4 7.3E-07 1.6E-11 63.8 6.5 56 5-64 99-154 (155)
369 cd03112 CobW_like The function 98.4 1.8E-06 3.8E-11 62.1 8.4 64 54-123 86-158 (158)
370 PF03193 DUF258: Protein of un 98.4 3.3E-07 7.1E-12 65.4 4.1 58 7-67 36-99 (161)
371 PRK12288 GTPase RsgA; Reviewed 98.3 9.6E-07 2.1E-11 71.2 6.0 58 9-69 208-271 (347)
372 PRK09563 rbgA GTPase YlqF; Rev 98.3 3.8E-06 8.3E-11 66.2 9.1 101 62-170 7-108 (287)
373 PRK10416 signal recognition pa 98.3 8.4E-06 1.8E-10 65.0 10.9 144 6-161 114-303 (318)
374 COG5192 BMS1 GTP-binding prote 98.3 1.9E-05 4E-10 66.2 12.4 135 5-152 68-210 (1077)
375 PRK12289 GTPase RsgA; Reviewed 98.3 1.4E-06 3E-11 70.4 5.7 55 8-66 174-235 (352)
376 PRK01889 GTPase RsgA; Reviewed 98.3 3.8E-06 8.2E-11 68.2 7.9 84 75-164 109-193 (356)
377 PRK13796 GTPase YqeH; Provisio 98.3 8E-06 1.7E-10 66.5 9.8 92 67-166 58-157 (365)
378 COG1618 Predicted nucleotide k 98.3 0.00021 4.5E-09 50.7 15.1 147 4-167 3-175 (179)
379 COG3523 IcmF Type VI protein s 98.2 4.6E-06 9.9E-11 75.9 8.6 156 9-174 128-320 (1188)
380 PRK14974 cell division protein 98.2 1.2E-05 2.7E-10 64.4 9.7 96 55-162 223-324 (336)
381 KOG0465 Mitochondrial elongati 98.2 4E-06 8.7E-11 70.4 7.0 117 6-126 39-171 (721)
382 TIGR00157 ribosome small subun 98.2 3.1E-06 6.8E-11 65.1 5.6 56 8-67 122-183 (245)
383 PRK13796 GTPase YqeH; Provisio 98.2 3.2E-06 6.8E-11 68.9 5.5 57 7-66 161-221 (365)
384 TIGR00064 ftsY signal recognit 98.2 3.9E-05 8.5E-10 60.0 11.4 96 54-161 154-261 (272)
385 TIGR03597 GTPase_YqeH ribosome 98.2 5.1E-06 1.1E-10 67.5 6.6 59 7-68 155-217 (360)
386 COG1162 Predicted GTPases [Gen 98.1 6.3E-06 1.4E-10 64.3 5.4 58 8-68 166-229 (301)
387 TIGR01425 SRP54_euk signal rec 98.1 6.1E-05 1.3E-09 62.2 11.3 86 54-149 182-273 (429)
388 KOG1143 Predicted translation 98.1 1.7E-05 3.6E-10 63.3 7.3 151 5-159 166-379 (591)
389 COG0523 Putative GTPases (G3E 98.1 0.00014 3E-09 58.1 12.6 89 55-151 85-185 (323)
390 cd01854 YjeQ_engC YjeQ/EngC. 98.1 9.3E-06 2E-10 64.0 5.9 60 7-69 162-227 (287)
391 KOG1424 Predicted GTP-binding 98.0 8.5E-06 1.8E-10 67.3 4.5 57 6-66 314-370 (562)
392 PRK11537 putative GTP-binding 98.0 0.00025 5.4E-09 56.7 12.6 85 55-149 91-186 (318)
393 PRK00098 GTPase RsgA; Reviewed 98.0 1.8E-05 3.8E-10 62.8 6.1 56 8-66 166-227 (298)
394 PRK12727 flagellar biosynthesi 98.0 0.00032 6.9E-09 59.3 13.4 138 7-156 351-523 (559)
395 PRK14722 flhF flagellar biosyn 97.9 0.00014 3.1E-09 59.1 10.9 137 6-149 137-315 (374)
396 COG1162 Predicted GTPases [Gen 97.9 6.5E-05 1.4E-09 58.7 8.5 91 71-164 72-163 (301)
397 KOG4273 Uncharacterized conser 97.9 6.6E-05 1.4E-09 56.9 8.1 115 6-124 4-122 (418)
398 KOG3859 Septins (P-loop GTPase 97.9 4.6E-05 9.9E-10 58.6 7.2 60 5-64 41-104 (406)
399 PRK14721 flhF flagellar biosyn 97.9 0.00044 9.5E-09 57.2 12.9 138 7-156 192-365 (420)
400 PRK13695 putative NTPase; Prov 97.9 0.00042 9E-09 50.5 11.5 22 7-28 1-22 (174)
401 KOG1534 Putative transcription 97.9 5.2E-05 1.1E-09 56.0 6.2 111 56-168 99-251 (273)
402 cd03115 SRP The signal recogni 97.8 0.00026 5.6E-09 51.5 9.8 84 54-147 82-171 (173)
403 PF02492 cobW: CobW/HypB/UreG, 97.8 4.9E-05 1.1E-09 55.7 5.7 79 55-140 85-169 (178)
404 cd03114 ArgK-like The function 97.8 0.00017 3.7E-09 51.1 8.1 58 54-122 91-148 (148)
405 cd03222 ABC_RNaseL_inhibitor T 97.8 0.00041 8.8E-09 50.7 9.9 23 8-30 27-49 (177)
406 PRK14723 flhF flagellar biosyn 97.7 0.00069 1.5E-08 59.7 11.9 142 8-159 187-366 (767)
407 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00024 5.3E-09 41.2 6.0 47 75-122 10-58 (58)
408 PRK11889 flhF flagellar biosyn 97.7 0.00057 1.2E-08 55.8 10.4 143 6-160 241-420 (436)
409 PF03266 NTPase_1: NTPase; In 97.7 0.00024 5.3E-09 51.4 7.5 135 8-156 1-163 (168)
410 PRK00771 signal recognition pa 97.7 0.00012 2.5E-09 60.9 6.3 84 56-149 177-266 (437)
411 KOG0469 Elongation factor 2 [T 97.6 0.00028 6.1E-09 58.6 8.0 128 5-136 18-176 (842)
412 cd02038 FleN-like FleN is a me 97.6 0.00032 7E-09 49.2 7.4 107 10-124 4-110 (139)
413 PF00448 SRP54: SRP54-type pro 97.6 0.00056 1.2E-08 50.9 8.9 92 55-158 84-181 (196)
414 PF11111 CENP-M: Centromere pr 97.6 0.0047 1E-07 44.4 12.9 142 1-166 10-151 (176)
415 COG1419 FlhF Flagellar GTP-bin 97.6 0.0054 1.2E-07 50.1 14.7 134 6-149 203-372 (407)
416 KOG2484 GTPase [General functi 97.6 6.2E-05 1.3E-09 60.5 3.6 57 5-65 251-307 (435)
417 PRK06995 flhF flagellar biosyn 97.6 0.0012 2.7E-08 55.4 11.3 92 56-159 336-434 (484)
418 cd02042 ParA ParA and ParB of 97.6 0.00089 1.9E-08 44.2 8.6 82 9-102 2-84 (104)
419 PRK05703 flhF flagellar biosyn 97.6 0.0037 7.9E-08 52.1 13.7 91 54-156 299-396 (424)
420 cd01983 Fer4_NifH The Fer4_Nif 97.6 0.001 2.2E-08 42.9 8.5 69 9-91 2-71 (99)
421 PRK12724 flagellar biosynthesi 97.5 0.0014 3.1E-08 54.0 10.6 134 7-150 224-394 (432)
422 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 0.0022 4.7E-08 45.2 9.9 23 8-30 28-50 (144)
423 COG3640 CooC CO dehydrogenase 97.5 0.00068 1.5E-08 51.1 7.3 61 57-124 136-198 (255)
424 cd00009 AAA The AAA+ (ATPases 97.4 0.0014 3E-08 45.5 8.5 26 6-31 19-44 (151)
425 PRK10867 signal recognition pa 97.4 0.0016 3.5E-08 54.2 9.9 87 54-150 183-275 (433)
426 PRK12723 flagellar biosynthesi 97.4 0.006 1.3E-07 50.1 12.8 139 6-156 174-351 (388)
427 TIGR00959 ffh signal recogniti 97.4 0.0043 9.4E-08 51.6 12.0 87 54-150 182-274 (428)
428 TIGR02475 CobW cobalamin biosy 97.4 0.0032 7E-08 50.9 11.0 22 8-29 6-27 (341)
429 KOG0459 Polypeptide release fa 97.4 0.00017 3.7E-09 58.2 3.3 155 5-161 78-279 (501)
430 PF13555 AAA_29: P-loop contai 97.3 0.00024 5.3E-09 42.2 3.1 21 8-28 25-45 (62)
431 TIGR00235 udk uridine kinase. 97.3 0.0003 6.6E-09 52.7 4.1 29 1-29 1-29 (207)
432 PF13207 AAA_17: AAA domain; P 97.3 0.00025 5.4E-09 48.2 3.2 22 8-29 1-22 (121)
433 PRK12726 flagellar biosynthesi 97.3 0.002 4.3E-08 52.5 8.7 92 55-158 286-383 (407)
434 PRK08118 topology modulation p 97.3 0.00026 5.7E-09 51.2 3.3 23 7-29 2-24 (167)
435 cd03111 CpaE_like This protein 97.2 0.0024 5.2E-08 42.5 7.5 100 12-120 6-106 (106)
436 COG0563 Adk Adenylate kinase a 97.2 0.00031 6.7E-09 51.4 3.1 23 7-29 1-23 (178)
437 TIGR00150 HI0065_YjeE ATPase, 97.2 0.0019 4.1E-08 44.8 6.9 23 8-30 24-46 (133)
438 COG1116 TauB ABC-type nitrate/ 97.2 0.00029 6.4E-09 53.5 3.0 23 9-31 32-54 (248)
439 cd03110 Fer4_NifH_child This p 97.2 0.0045 9.8E-08 45.2 9.2 85 53-146 91-175 (179)
440 PRK07261 topology modulation p 97.2 0.00036 7.7E-09 50.8 3.2 23 7-29 1-23 (171)
441 PF13671 AAA_33: AAA domain; P 97.2 0.00036 7.8E-09 48.9 3.0 21 9-29 2-22 (143)
442 PRK10751 molybdopterin-guanine 97.2 0.0005 1.1E-08 49.9 3.7 29 1-29 1-29 (173)
443 PF00005 ABC_tran: ABC transpo 97.2 0.00038 8.3E-09 48.4 3.0 23 8-30 13-35 (137)
444 KOG1533 Predicted GTPase [Gene 97.1 0.00057 1.2E-08 51.4 3.9 68 55-124 97-176 (290)
445 KOG2485 Conserved ATP/GTP bind 97.1 0.00074 1.6E-08 52.9 4.7 61 4-65 141-206 (335)
446 PRK06731 flhF flagellar biosyn 97.1 0.0076 1.6E-07 47.1 10.1 139 7-158 76-252 (270)
447 PRK10646 ADP-binding protein; 97.1 0.0045 9.8E-08 43.9 7.9 23 8-30 30-52 (153)
448 COG1136 SalX ABC-type antimicr 97.1 0.00047 1E-08 52.0 3.0 23 8-30 33-55 (226)
449 COG1126 GlnQ ABC-type polar am 97.1 0.00068 1.5E-08 50.5 3.7 23 8-30 30-52 (240)
450 cd02019 NK Nucleoside/nucleoti 97.1 0.0007 1.5E-08 41.4 3.1 21 9-29 2-22 (69)
451 COG0802 Predicted ATPase or ki 97.0 0.0037 8E-08 43.9 6.9 24 8-31 27-50 (149)
452 COG1120 FepC ABC-type cobalami 97.0 0.00057 1.2E-08 52.6 3.0 22 8-29 30-51 (258)
453 PF13521 AAA_28: AAA domain; P 97.0 0.00042 9.1E-09 49.9 2.2 22 8-29 1-22 (163)
454 KOG0463 GTP-binding protein GP 97.0 0.0062 1.3E-07 49.1 8.7 117 5-125 132-287 (641)
455 COG1117 PstB ABC-type phosphat 97.0 0.00071 1.5E-08 50.4 3.1 24 4-27 31-54 (253)
456 COG1121 ZnuC ABC-type Mn/Zn tr 97.0 0.00069 1.5E-08 52.0 3.0 22 8-29 32-53 (254)
457 cd03238 ABC_UvrA The excision 97.0 0.00081 1.8E-08 49.1 3.3 21 7-27 22-42 (176)
458 cd00267 ABC_ATPase ABC (ATP-bi 97.0 0.017 3.6E-07 41.2 10.1 23 8-30 27-49 (157)
459 COG0396 sufC Cysteine desulfur 96.9 0.0012 2.6E-08 49.6 4.1 22 9-30 33-54 (251)
460 PRK05416 glmZ(sRNA)-inactivati 96.9 0.018 4E-07 45.4 10.9 21 7-27 7-27 (288)
461 cd00071 GMPK Guanosine monopho 96.9 0.00088 1.9E-08 46.8 3.1 21 9-29 2-22 (137)
462 smart00382 AAA ATPases associa 96.9 0.00098 2.1E-08 45.8 3.3 27 7-33 3-29 (148)
463 PRK10078 ribose 1,5-bisphospho 96.9 0.00092 2E-08 49.3 3.3 22 8-29 4-25 (186)
464 PRK01889 GTPase RsgA; Reviewed 96.9 0.0011 2.3E-08 54.0 3.9 25 7-31 196-220 (356)
465 COG3839 MalK ABC-type sugar tr 96.9 0.00082 1.8E-08 53.8 3.0 23 9-31 32-54 (338)
466 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00097 2.1E-08 44.4 2.9 20 8-27 17-36 (107)
467 PF00004 AAA: ATPase family as 96.9 0.001 2.3E-08 45.6 3.2 22 9-30 1-22 (132)
468 PTZ00088 adenylate kinase 1; P 96.9 0.0012 2.6E-08 50.3 3.7 28 1-28 1-28 (229)
469 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.001 2.2E-08 50.2 3.2 23 8-30 32-54 (218)
470 PF02367 UPF0079: Uncharacteri 96.8 0.0018 4E-08 44.2 4.1 24 7-30 16-39 (123)
471 TIGR02322 phosphon_PhnN phosph 96.8 0.0011 2.3E-08 48.5 3.1 22 8-29 3-24 (179)
472 COG4598 HisP ABC-type histidin 96.8 0.015 3.2E-07 42.5 8.7 23 8-30 34-56 (256)
473 PRK05480 uridine/cytidine kina 96.8 0.0016 3.4E-08 48.9 4.0 26 4-29 4-29 (209)
474 cd03225 ABC_cobalt_CbiO_domain 96.8 0.0011 2.5E-08 49.7 3.3 23 8-30 29-51 (211)
475 KOG0780 Signal recognition par 96.8 0.0016 3.4E-08 52.6 4.1 42 52-93 181-228 (483)
476 cd01130 VirB11-like_ATPase Typ 96.8 0.0012 2.7E-08 48.6 3.3 23 7-29 26-48 (186)
477 TIGR00960 3a0501s02 Type II (G 96.8 0.0012 2.5E-08 49.8 3.2 23 8-30 31-53 (216)
478 PRK06217 hypothetical protein; 96.8 0.0012 2.7E-08 48.5 3.3 23 7-29 2-24 (183)
479 PF03215 Rad17: Rad17 cell cyc 96.8 0.009 2E-07 51.0 8.8 22 8-29 47-68 (519)
480 PRK04195 replication factor C 96.8 0.019 4.1E-07 48.8 10.8 25 6-30 39-63 (482)
481 cd03226 ABC_cobalt_CbiO_domain 96.8 0.0012 2.6E-08 49.4 3.2 23 8-30 28-50 (205)
482 KOG1424 Predicted GTP-binding 96.8 0.0024 5.1E-08 53.3 5.1 81 67-152 164-244 (562)
483 cd02036 MinD Bacterial cell di 96.8 0.055 1.2E-06 39.1 12.0 84 56-146 64-147 (179)
484 TIGR01166 cbiO cobalt transpor 96.8 0.0011 2.5E-08 48.9 3.0 23 8-30 20-42 (190)
485 COG3840 ThiQ ABC-type thiamine 96.8 0.0013 2.8E-08 47.9 3.1 22 8-29 27-48 (231)
486 KOG0446 Vacuolar sorting prote 96.8 0.00065 1.4E-08 59.3 1.9 120 4-125 27-213 (657)
487 cd03261 ABC_Org_Solvent_Resist 96.8 0.0012 2.7E-08 50.4 3.2 23 8-30 28-50 (235)
488 PF03205 MobB: Molybdopterin g 96.8 0.0014 3E-08 46.0 3.3 22 8-29 2-23 (140)
489 PF13238 AAA_18: AAA domain; P 96.8 0.0012 2.6E-08 45.1 2.9 21 9-29 1-21 (129)
490 TIGR03263 guanyl_kin guanylate 96.8 0.0012 2.7E-08 48.1 3.1 22 8-29 3-24 (180)
491 cd01131 PilT Pilus retraction 96.8 0.0096 2.1E-07 44.3 7.9 22 9-30 4-25 (198)
492 cd02023 UMPK Uridine monophosp 96.8 0.0013 2.8E-08 48.9 3.1 21 9-29 2-22 (198)
493 cd03265 ABC_DrrA DrrA is the A 96.8 0.0014 2.9E-08 49.7 3.3 22 8-29 28-49 (220)
494 TIGR02673 FtsE cell division A 96.8 0.0013 2.9E-08 49.4 3.2 23 8-30 30-52 (214)
495 TIGR03608 L_ocin_972_ABC putat 96.8 0.0014 3E-08 49.0 3.3 23 8-30 26-48 (206)
496 cd03292 ABC_FtsE_transporter F 96.8 0.0014 3E-08 49.3 3.3 23 8-30 29-51 (214)
497 cd03259 ABC_Carb_Solutes_like 96.8 0.0014 3E-08 49.3 3.3 23 8-30 28-50 (213)
498 COG0194 Gmk Guanylate kinase [ 96.8 0.00094 2E-08 48.6 2.2 25 6-30 4-28 (191)
499 cd03264 ABC_drug_resistance_li 96.7 0.0013 2.8E-08 49.4 3.0 22 8-29 27-48 (211)
500 PRK14530 adenylate kinase; Pro 96.7 0.0014 3.1E-08 49.4 3.3 22 7-28 4-25 (215)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-44 Score=252.95 Aligned_cols=188 Identities=49% Similarity=0.847 Sum_probs=176.5
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.++|.+||+|+|+.|||||.|+.||.+..+.+.+..|.|+++..+.+.+++..+++++|||+|+++|++....||+++|+
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG 84 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCCCCHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAF 160 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~ 160 (211)
+|+|||+++.++|.++..|+.++.++...++|.++|+||+|+.+.+.++.++++.++.+++.+ ++++||+++.+++++|
T Consensus 85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F 164 (205)
T KOG0084|consen 85 IIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAF 164 (205)
T ss_pred EEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHH
Confidence 999999999999999999999999999989999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCCeEEee
Q 028294 161 IKTAAKILQNIQEGALDAVNDQSGIKVGY 189 (211)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (211)
..|...+.++...........+.++.++.
T Consensus 165 ~~la~~lk~~~~~~~~~~~~~~~~~ql~~ 193 (205)
T KOG0084|consen 165 LTLAKELKQRKGLHVKWSTASLESVQLKG 193 (205)
T ss_pred HHHHHHHHHhcccCCCCCcCCCCceeeCC
Confidence 99999999998887776654444444433
No 2
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-41 Score=239.52 Aligned_cols=188 Identities=80% Similarity=1.270 Sum_probs=178.9
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|.|.+.+|++++|+.|||||+|+.+|++..|.+.+..|.|+++....+++++..+++++|||+|++.+.+....||+.+-
T Consensus 1 m~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~ 80 (216)
T KOG0098|consen 1 MSYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAA 80 (216)
T ss_pred CCccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
++|+|||++.+++|..+..|+..++++...+..+++++||+||...+.++.+|++.|++++++.++++||+++.++++.|
T Consensus 81 GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 81 GALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred ceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence 99999999999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCC-eEEe
Q 028294 161 IKTAAKILQNIQEGALDAVNDQSG-IKVG 188 (211)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~-~~~~ 188 (211)
......++.....+........++ ++.+
T Consensus 161 ~nta~~Iy~~~q~g~~~~~~~~k~k~k~~ 189 (216)
T KOG0098|consen 161 INTAKEIYRKIQDGVFDDINESKGKIKIG 189 (216)
T ss_pred HHHHHHHHHHHHhcccccccccccceeec
Confidence 999999999999887776655555 6644
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-41 Score=239.40 Aligned_cols=198 Identities=41% Similarity=0.738 Sum_probs=175.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+++|..++|||||+.||..+.|.+...+++|..+..+.+.+++..+++.||||+|+++|+++.+.|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+|||+++.+||..+..|+.++.+...++.-+.+++||+||.+.+++..+++..++...++.|+++||+++.|++++|..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I 162 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI 162 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence 99999999999999999999999888888888999999999989999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccCCCCCeEEeeccCCCCCCCCCCccccCCCCCC
Q 028294 164 AAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 211 (211)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 211 (211)
.+.+.............+..++.+..-. .+...++|||
T Consensus 163 a~~lp~~~~~~~~~~~~~~~g~~l~~~~----------~~~~~~~~C~ 200 (200)
T KOG0092|consen 163 AEKLPCSDPQERQGLPNRRQGVDLNSNQ----------EPARPSGCCA 200 (200)
T ss_pred HHhccCccccccccccccccceecccCC----------CCcCcCCcCC
Confidence 9999777665554322222222222111 4667788996
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-40 Score=235.82 Aligned_cols=176 Identities=52% Similarity=0.972 Sum_probs=169.4
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+|++.+||+++|+++||||+|+.+|..+.+...+..+.|+++..+++.+++..+.+++|||+|+++++.+...|++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+++|||+++..+|+++..|+..+.++....+|.++|+||+|+...+.++.+.+++++.++|++|+++||++|.||++.|.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~ 167 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL 167 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccc
Q 028294 162 KTAAKILQNIQEGALD 177 (211)
Q Consensus 162 ~i~~~~~~~~~~~~~~ 177 (211)
.|.+.++.+.++...+
T Consensus 168 ~La~~i~~k~~~~~~~ 183 (207)
T KOG0078|consen 168 SLARDILQKLEDAELE 183 (207)
T ss_pred HHHHHHHhhcchhhhc
Confidence 9999999877665433
No 5
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=7.8e-39 Score=240.81 Aligned_cols=210 Identities=85% Similarity=1.326 Sum_probs=190.7
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|++++.+||+|+|++|+|||||+++|+...+.+.+.++.+.++....+.+++..+.+.+||++|++.+..++..++..+|
T Consensus 1 ~~~~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad 80 (210)
T PLN03108 1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAA 80 (210)
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 89999999999999999999999999999988888888888888888889998899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
++|+|||++++.++..+..|+..+......+.|+++++||+|+...+.+..+++.+++...+++++++|++++.|++++|
T Consensus 81 ~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f 160 (210)
T PLN03108 81 GALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAF 160 (210)
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999988877666689999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccCCCCCeEEeeccCCCCCCCCCCccccCCCCC
Q 028294 161 IKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 210 (211)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 210 (211)
+++.+.+.+...+.......++.++....+.-++.+..+.+..++.+|||
T Consensus 161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (210)
T PLN03108 161 IKTAAKIYKKIQDGVFDVSNESYGIKVGYGAIPGASGGRDGTSSQGGGCC 210 (210)
T ss_pred HHHHHHHHHHhhhccccccccccccccccCCCCCCCCCccccccCCCCCC
Confidence 99999998887776666677778887777777777778889999999999
No 6
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-39 Score=230.41 Aligned_cols=168 Identities=41% Similarity=0.702 Sum_probs=159.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+|++++|+.+|||||||+|++.+.+...|.+++|+++...++.+.+.+++|++|||+|+|+|+.+.+.|+++++++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC-CCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHANP-NMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
|||+++..+|++...|++.+...... +.-+++|+||.||.+.+++..++++..++++++.|+++||+.|.||.++|..|
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI 180 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI 180 (221)
T ss_pred EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence 99999999999999999999888875 47788889999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHh
Q 028294 164 AAKILQNIQ 172 (211)
Q Consensus 164 ~~~~~~~~~ 172 (211)
..++.....
T Consensus 181 aa~l~~~~~ 189 (221)
T KOG0094|consen 181 AAALPGMEV 189 (221)
T ss_pred HHhccCccc
Confidence 887766655
No 7
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-39 Score=233.38 Aligned_cols=210 Identities=50% Similarity=0.846 Sum_probs=183.3
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+|||.+||+++|++++|||-|+.||..+.|.....+|.|+++....+.++++.++.+||||+|+++|++...+|++.+.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+++|||++...+|+++..|+.+++.+...++++++|+||+||...+.++.++++.++...+..++++||.++.+++++|+
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~ 169 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE 169 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCCe---EEeeccCCCCCCCCCCccccCCCCCC
Q 028294 162 KTAAKILQNIQEGALDAVNDQSGI---KVGYGRGQGPSGARDGTVSQRGGCCS 211 (211)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~cc~ 211 (211)
.++..+.....+...........- .-+......+......++.+++.|||
T Consensus 170 ~~l~~I~~~vs~k~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~cc~ 222 (222)
T KOG0087|consen 170 RVLTEIYKIVSKKQLDENNDPLESSSPLQGQEISVHPTSEEPFSPTKKSGCCS 222 (222)
T ss_pred HHHHHHHHHHHHHhhhccccccccCCCCCCcccccccCCccccccccCCCCCC
Confidence 999999998887665555442221 11112222222233335555667775
No 8
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=223.14 Aligned_cols=172 Identities=47% Similarity=0.826 Sum_probs=162.4
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
|++.+||+++|.+|+|||||+.+|....+.+..+.++|+++..+.+.+++..+++.||||+|+++|+.+.+.|++.+.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
|+|||++.+++|.++..|..++..+.. +++-.++|+||.|...++.++.+++.++++++++.|+++||++.++++..|+
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe 167 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE 167 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence 999999999999999999999988775 6677789999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 028294 162 KTAAKILQNIQEG 174 (211)
Q Consensus 162 ~i~~~~~~~~~~~ 174 (211)
.+++++++...-.
T Consensus 168 elveKIi~tp~l~ 180 (209)
T KOG0080|consen 168 ELVEKIIETPSLW 180 (209)
T ss_pred HHHHHHhcCcchh
Confidence 9999997755433
No 9
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=6.2e-37 Score=231.37 Aligned_cols=207 Identities=48% Similarity=0.821 Sum_probs=171.4
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+++.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.|||++|++++..++..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 45789999999999999999999999998888888989999888889999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|+|||++++.+++.+..|+..+......+.|+++++||+|+........++...++...+++++++||+++.|++++|+.
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988776668999999999999777777778888888889999999999999999999999
Q ss_pred HHHHHHHHHhhccccccCCCCCeEEeeccCCCCCCCCCCccccCCCCCC
Q 028294 163 TAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 211 (211)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 211 (211)
|.+.+.+..............+ .+....+......+.++.+++||||
T Consensus 169 l~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~c~ 215 (216)
T PLN03110 169 ILLEIYHIISKKALAAQEAAAN--SGLPGQGTTINVADTSGNNKRGCCS 215 (216)
T ss_pred HHHHHHHHhhccccccccCccc--ccCcCcCCcccccCccCCCCCCCcC
Confidence 9999988655433322221111 1111111111223345778889996
No 10
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-38 Score=215.15 Aligned_cols=208 Identities=54% Similarity=0.891 Sum_probs=189.8
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+|||.+|++++|+.|.|||.|+++|...++.....+++|+++..+.+++.++.++++||||+|+++|++....|++.+.+
T Consensus 5 tYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAG 84 (214)
T KOG0086|consen 5 TYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAG 84 (214)
T ss_pred hhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
.++|||++++++|+.+..|+..++....+++-+++++||.|+.+.+++...++..|+.+..+.+.++|+++|+|+++.|-
T Consensus 85 AlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl 164 (214)
T KOG0086|consen 85 ALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 164 (214)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCCeEEeeccCCCCCCCCCCccccCCCC
Q 028294 162 KTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGC 209 (211)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 209 (211)
...+.++.+.+.++.++.+..++|--|+-.=-..-.+++-....++.|
T Consensus 165 ~c~~tIl~kIE~GElDPer~gsGIQYGdaslR~l~~p~s~r~~n~~~c 212 (214)
T KOG0086|consen 165 KCARTILNKIESGELDPERMGSGIQYGDASLRQLRQPRSARAVNPQPC 212 (214)
T ss_pred HHHHHHHHHHhhcCCCHHHcccccccchhhhhccCCcchhccCCCCCC
Confidence 999999999999999999999998777655323322232233344455
No 11
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=2.6e-36 Score=222.94 Aligned_cols=170 Identities=38% Similarity=0.744 Sum_probs=156.4
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
++++.+||+++|..|||||||+++|....+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus 2 ~~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ 81 (189)
T cd04121 2 AYDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQG 81 (189)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 46788999999999999999999999998888888888888888888899999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|||++++.+|+++..|+..+.... ++.|++||+||.|+...+.+..++++.+++..+++++++||++|.||+++|+
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~ 160 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFT 160 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 999999999999999999999997654 5899999999999987777888999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 028294 162 KTAAKILQNIQ 172 (211)
Q Consensus 162 ~i~~~~~~~~~ 172 (211)
+|.+.+..+..
T Consensus 161 ~l~~~i~~~~~ 171 (189)
T cd04121 161 ELARIVLMRHG 171 (189)
T ss_pred HHHHHHHHhcC
Confidence 99988865444
No 12
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2e-37 Score=213.66 Aligned_cols=206 Identities=45% Similarity=0.759 Sum_probs=181.7
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
..|+++++++|++-+|||+|++.+..+++.+-.+|++|+++....+.+ ++..+++++|||+|+++++++...|+++.=+
T Consensus 5 f~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvg 84 (213)
T KOG0091|consen 5 FHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVG 84 (213)
T ss_pred eEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccc
Confidence 458999999999999999999999999999999999999999888777 6788999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCC-eEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHAN-PNM-SIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~-p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 159 (211)
+++|||++++++|+.+..|+.+...+.. +.+ -+.+|++|+|+...++++.+++++++..++..|+++|+++|.|+++.
T Consensus 85 vllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEA 164 (213)
T KOG0091|consen 85 VLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEA 164 (213)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHH
Confidence 9999999999999999999998877665 444 45778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCCCCCeEEeeccCCCCCCCCCCccccCCCCCC
Q 028294 160 FIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCCS 211 (211)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc~ 211 (211)
|..|.+.+.....+++......-.+++.+-+. +... +..-+.+.+.|||
T Consensus 165 F~mlaqeIf~~i~qGeik~edgw~gvKSsrpn-~i~~--s~~~~~P~k~c~C 213 (213)
T KOG0091|consen 165 FDMLAQEIFQAIQQGEIKLEDGWGGVKSSRPN-QIPR--SPSRKQPSKPCQC 213 (213)
T ss_pred HHHHHHHHHHHHhcCceeeeeccccccccCCC-cCCC--cccccCCCCCCCC
Confidence 99999999999999999999888888773333 2222 2333444446877
No 13
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=4.3e-36 Score=223.78 Aligned_cols=165 Identities=45% Similarity=0.806 Sum_probs=152.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+.|+++|..|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999999888899899998888899999999999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEeCCCCCCHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|++++.+|+.+..|+..+......+.|+++|+||+|+...+++..+++.+++.+. ++.++++||++|.|++++|++|.+
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~ 160 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD 160 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999999887766668999999999999877788888888888875 788999999999999999999999
Q ss_pred HHHHHH
Q 028294 166 KILQNI 171 (211)
Q Consensus 166 ~~~~~~ 171 (211)
.+....
T Consensus 161 ~~~~~~ 166 (202)
T cd04120 161 DILKKM 166 (202)
T ss_pred HHHHhC
Confidence 887653
No 14
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.3e-35 Score=221.66 Aligned_cols=177 Identities=45% Similarity=0.753 Sum_probs=158.1
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
++++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|+
T Consensus 2 ~~~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ 81 (199)
T cd04110 2 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHG 81 (199)
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcE
Confidence 46788999999999999999999999999888888888888888888888888899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|||+++++++..+..|+..+.... ...|++||+||+|+.+...+..++...++...+.+++++|+++|.|++++|+
T Consensus 82 iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 82 VIVVYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFN 160 (199)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence 999999999999999999999886654 4789999999999987667777888888888899999999999999999999
Q ss_pred HHHHHHHHHHhhcccccc
Q 028294 162 KTAAKILQNIQEGALDAV 179 (211)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~ 179 (211)
+|.+.++....+......
T Consensus 161 ~l~~~~~~~~~~~~~~~~ 178 (199)
T cd04110 161 CITELVLRAKKDNLAKQQ 178 (199)
T ss_pred HHHHHHHHhhhccCcccc
Confidence 999999877665544433
No 15
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.6e-37 Score=209.04 Aligned_cols=168 Identities=49% Similarity=0.826 Sum_probs=160.9
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
|+..++.+|+|++|+|||+|+.+|....|...|..++|.++.++++.+++..+.++|||++|+++|+.+...+++..+++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 55778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|+|||+++.++|.++..|+++++.... ..|-++|+||.|.++.+.+..++++.++...++.+|++|+++..++++.|.-
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~ncd-sv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~c 163 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRNNCD-SVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHC 163 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHhcCc-cccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHH
Confidence 999999999999999999999988775 7899999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 028294 163 TAAKILQNI 171 (211)
Q Consensus 163 i~~~~~~~~ 171 (211)
|.+.+++..
T Consensus 164 it~qvl~~k 172 (198)
T KOG0079|consen 164 ITKQVLQAK 172 (198)
T ss_pred HHHHHHHHH
Confidence 999888776
No 16
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.4e-35 Score=220.59 Aligned_cols=173 Identities=38% Similarity=0.667 Sum_probs=153.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+++|++|||||||+++|+.+.+...+.++.+.++....+.++ +..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999999988888998988888888887 7889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhc----CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCCCCCHHHHH
Q 028294 86 YDITRRETFNHLSSWLEDARQHA----NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAF 160 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~ 160 (211)
||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+......+++..++...+ ..++++||++|.|++++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 99999999999999988876532 2578999999999997656677888999999988 689999999999999999
Q ss_pred HHHHHHHHHHHhhcccccc
Q 028294 161 IKTAAKILQNIQEGALDAV 179 (211)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~ 179 (211)
++|.+.+.+..........
T Consensus 161 ~~l~~~l~~~~~~~~~~~~ 179 (201)
T cd04107 161 RFLVKNILANDKNLQQAET 179 (201)
T ss_pred HHHHHHHHHhchhhHhhcC
Confidence 9999998876554444433
No 17
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=213.27 Aligned_cols=169 Identities=38% Similarity=0.699 Sum_probs=157.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+||+++|++|+|||||+|++...+|...+..++|.++..+.+.+++..+.++||||+|+++|.++...+++.+|.+++
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl 87 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL 87 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCCC--CCCCHHHHHHHHHHc-CCcEEEEeCCCCCCHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHR--RAVSKEEGEQFAKEN-GLLFLEASARTAQNVE 157 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~ 157 (211)
|||++++.+|+++..|+.++..... ...|++|++||.|+.+. ++++.+.+..+|... +++|+++||+...||+
T Consensus 88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~ 167 (210)
T KOG0394|consen 88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVD 167 (210)
T ss_pred EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHH
Confidence 9999999999999999999977665 35799999999999763 678889999999985 5899999999999999
Q ss_pred HHHHHHHHHHHHHHhh
Q 028294 158 EAFIKTAAKILQNIQE 173 (211)
Q Consensus 158 ~~~~~i~~~~~~~~~~ 173 (211)
++|+.+.+.+++....
T Consensus 168 ~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 168 EAFEEIARRALANEDR 183 (210)
T ss_pred HHHHHHHHHHHhccch
Confidence 9999999999887764
No 18
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.7e-35 Score=219.84 Aligned_cols=189 Identities=52% Similarity=0.890 Sum_probs=164.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+++||+|+|++|||||||+++|++..+...+.++.+.++....+.+ ++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 4689999999999999999999999998888888888888777776 466789999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
+|||++++.++.++..|+..+..... ...|++|++||.|+.+...+..++...+++..+++++++||+++.|++++|+.
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998876543 45788999999999877778888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccCCCCCeEEeeccCC
Q 028294 163 TAAKILQNIQEGALDAVNDQSGIKVGYGRGQ 193 (211)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (211)
|.+.+.++...+.......-.+++.+..++.
T Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (211)
T cd04111 161 LTQEIYERIKRGELCALDGWDGVKSGFPAGR 191 (211)
T ss_pred HHHHHHHHhhcCCCCccccccccccCCCccc
Confidence 9999999888776555555555555555533
No 19
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-36 Score=206.10 Aligned_cols=174 Identities=47% Similarity=0.842 Sum_probs=163.7
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+|.+.+||+++|..|+|||.|+++|..+-|++....+.|+++-++++.+++.+++++||||+|+++|++..+.|++.+++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|||++-.++|..+..|+.++..+...++--|+|+||.|+.+.++++...++.+.......|.++||++.++++.+|.
T Consensus 83 lilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~ 162 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL 162 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence 99999999999999999999999999887888899999999999889998999999999888999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 028294 162 KTAAKILQNIQEGA 175 (211)
Q Consensus 162 ~i~~~~~~~~~~~~ 175 (211)
.+.-.+....+..+
T Consensus 163 ~~a~rli~~ar~~d 176 (213)
T KOG0095|consen 163 DLACRLISEARQND 176 (213)
T ss_pred HHHHHHHHHHHhcc
Confidence 98877776665443
No 20
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-35 Score=201.78 Aligned_cols=173 Identities=41% Similarity=0.790 Sum_probs=164.3
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
++++-+|++++|...+|||||+.++++..+.+....++|+++..+++--..+.+++++|||+|+++++.+...+++++++
T Consensus 17 nFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamg 96 (193)
T KOG0093|consen 17 NFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMG 96 (193)
T ss_pred cccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccce
Confidence 46788999999999999999999999999999999999999999988777788999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|++||+++.++|..+..|.-.+..+...+.|+|+++||||+.+++.++.+.+..++.+.|+.|+++||+.+.|++++|+
T Consensus 97 fiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe 176 (193)
T KOG0093|consen 97 FILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFE 176 (193)
T ss_pred EEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHH
Confidence 99999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 028294 162 KTAAKILQNIQEG 174 (211)
Q Consensus 162 ~i~~~~~~~~~~~ 174 (211)
.++..+-+...+.
T Consensus 177 ~lv~~Ic~kmses 189 (193)
T KOG0093|consen 177 RLVDIICDKMSES 189 (193)
T ss_pred HHHHHHHHHhhhh
Confidence 9999888776653
No 21
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.1e-34 Score=213.41 Aligned_cols=168 Identities=45% Similarity=0.756 Sum_probs=152.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998878888888888888888888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|++++.++..+..|+..+......+.|+++++||.|+.+...+..++...++...+++++++||+++.|++++|++|.+.
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~ 160 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL 160 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887766678999999999998777777788888888888999999999999999999999999
Q ss_pred HHHHHhhc
Q 028294 167 ILQNIQEG 174 (211)
Q Consensus 167 ~~~~~~~~ 174 (211)
+..+....
T Consensus 161 ~~~~~~~~ 168 (188)
T cd04125 161 IIKRLEEQ 168 (188)
T ss_pred HHHHhhcC
Confidence 98765544
No 22
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=9.4e-35 Score=218.92 Aligned_cols=187 Identities=31% Similarity=0.529 Sum_probs=152.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|||||||+++|+.+.+.. ..++.+..+....+ ..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998865 46666666544332 4677999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC-------------------CCCCCHHHHHHHHHHcC-----
Q 028294 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH-------------------RRAVSKEEGEQFAKENG----- 142 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~~~~~~~~~~~~~----- 142 (211)
|++++.+|..+..|+..+......+.|+++|+||+|+.+ .+.+..+++..++.+.+
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 999999999999998888766556799999999999965 46778889999998876
Q ss_pred ---------CcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhccccccCCCCCeEEeeccCCCCCCCCCCccccCCCCC
Q 028294 143 ---------LLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGCC 210 (211)
Q Consensus 143 ---------~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cc 210 (211)
++|+++||++|.||+++|..+.+.++....+...+..+.+-.+ . -.+-+++|++||
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~ 220 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRTQGTV-----------N-LPNPKRSKSKCC 220 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccc-----------c-CCCcccCCCCCC
Confidence 6799999999999999999999988876665544444321112 1 223467788898
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.3e-34 Score=210.34 Aligned_cols=165 Identities=68% Similarity=1.113 Sum_probs=152.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
+.+||+++|++|+|||||+++|..+.+.+.+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 1 ~~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 80 (166)
T cd04122 1 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 80 (166)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999999999988888888888888888889999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
|||++++.++..+..|+..+......+.|+++++||+|+.+...+..+++..++...+++++++||++|.|++++|..+.
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 81 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999988777667899999999999988777888889999999999999999999999999999999
Q ss_pred HHHHH
Q 028294 165 AKILQ 169 (211)
Q Consensus 165 ~~~~~ 169 (211)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd04122 161 KKIYQ 165 (166)
T ss_pred HHHhh
Confidence 87754
No 24
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=8.6e-35 Score=215.79 Aligned_cols=167 Identities=39% Similarity=0.637 Sum_probs=146.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|.+|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||||++++..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 6899999999999999999999888877777665543 446688888899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 88 ITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|+++.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999988866542 5789999999999977677777778888888889999999999999999999999
Q ss_pred HHHHHHHhhcc
Q 028294 165 AKILQNIQEGA 175 (211)
Q Consensus 165 ~~~~~~~~~~~ 175 (211)
+.+..+..++.
T Consensus 160 ~~l~~~~~~~~ 170 (190)
T cd04144 160 RALRQQRQGGQ 170 (190)
T ss_pred HHHHHhhcccC
Confidence 98877777653
No 25
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.7e-34 Score=217.62 Aligned_cols=168 Identities=26% Similarity=0.471 Sum_probs=149.9
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+++|+.|||||+|+++|..+.+...+.++.+..+.. .+.+++..+.+.||||+|++.+..+...+++.+|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 467899999999999999999999999999999998877754 5788999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHH-HHHHHHHHHHhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEe
Q 028294 84 LVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEAS 149 (211)
Q Consensus 84 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~s 149 (211)
+|||++++.+|.+ +..|+..+.... ++.|+++|+||+|+.+ ...+..+++++++...++ .|+++|
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999998 478999887765 4789999999999964 256788999999999998 599999
Q ss_pred CCCCC-CHHHHHHHHHHHHHHHHhh
Q 028294 150 ARTAQ-NVEEAFIKTAAKILQNIQE 173 (211)
Q Consensus 150 ~~~~~-~i~~~~~~i~~~~~~~~~~ 173 (211)
|++|. |++++|..+...++++...
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~~~~~ 193 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLNKLSP 193 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHHhccc
Confidence 99997 8999999999988775444
No 26
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-35 Score=197.37 Aligned_cols=207 Identities=60% Similarity=0.976 Sum_probs=187.3
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+|.|.+|.+++|+-|+|||.|++.|...+|...-+++.|+++....+.+.+..+++++|||+|+++|+.....+++.+.+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
.++|||++.+.++..+..|+...+....++..+++++||.|+...+.+..+++++++.++++.|.++|+++|.++++.|-
T Consensus 87 almvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl 166 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL 166 (215)
T ss_pred eeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCCeEEeeccCCCCCCCCCCccccCCCC
Q 028294 162 KTAAKILQNIQEGALDAVNDQSGIKVGYGRGQGPSGARDGTVSQRGGC 209 (211)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 209 (211)
...+.+.+...++..+.+.-++++-...+.-.++.- ..+...+|.+|
T Consensus 167 e~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l-~se~~~~kd~c 213 (215)
T KOG0097|consen 167 ETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSL-SSEATGAKDQC 213 (215)
T ss_pred HHHHHHHHhhhcCcccccchhccCcCCCCCCCcccc-ccCCCCccccC
Confidence 999999999999999988888877544443222222 33445566678
No 27
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=6.5e-34 Score=214.90 Aligned_cols=164 Identities=35% Similarity=0.585 Sum_probs=148.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC-EEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++ ..+.+.|||++|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888999999898888888865 578999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 86 YDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
||+++++++.++..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999877643 35689999999999877778888889999989999999999999999999999
Q ss_pred HHHHHHHH
Q 028294 163 TAAKILQN 170 (211)
Q Consensus 163 i~~~~~~~ 170 (211)
|.+.+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988764
No 28
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=3.8e-34 Score=208.16 Aligned_cols=166 Identities=55% Similarity=0.986 Sum_probs=152.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
++.+||+++|++|+|||||+++|.+..+.+.+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 1 DYLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 57899999999999999999999999999988888888888777888888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+|||++++.++..+..|+..+......+.|+++++||+|+.+......+++..++...+.+++++||+++.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999987766689999999999998766677788888888889999999999999999999999
Q ss_pred HHHHHH
Q 028294 164 AAKILQ 169 (211)
Q Consensus 164 ~~~~~~ 169 (211)
.+.+..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 988864
No 29
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=3.5e-34 Score=212.32 Aligned_cols=170 Identities=38% Similarity=0.611 Sum_probs=149.1
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 3468999999999999999999999988877778776666 455778898999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
+|||++++.++..+..|+..+..... .+.|+++++||+|+.+...+..++...++...+.+++++||+++.|++++|++
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999988876543 57899999999999766666777788888888889999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 028294 163 TAAKILQNIQEG 174 (211)
Q Consensus 163 i~~~~~~~~~~~ 174 (211)
|.+.+....++.
T Consensus 162 l~~~l~~~~~~~ 173 (189)
T PTZ00369 162 LVREIRKYLKED 173 (189)
T ss_pred HHHHHHHHhhcc
Confidence 999887665543
No 30
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.3e-34 Score=212.19 Aligned_cols=165 Identities=47% Similarity=0.851 Sum_probs=147.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+++|++|||||||+++|....+.. .+.++.+.++....+.+++..+.+.||||||++++...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999988764 5667777777777788899999999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028294 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
||+++++++.++..|+..+......+.|+++++||.|+...+....++...++...+.+++++||++|.|++++|++|.+
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~ 160 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK 160 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999988876668999999999999766667778888888888999999999999999999999998
Q ss_pred HHHHHH
Q 028294 166 KILQNI 171 (211)
Q Consensus 166 ~~~~~~ 171 (211)
.+....
T Consensus 161 ~~~~~~ 166 (191)
T cd04112 161 ELKHRK 166 (191)
T ss_pred HHHHhc
Confidence 887653
No 31
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=8.3e-34 Score=208.67 Aligned_cols=168 Identities=41% Similarity=0.790 Sum_probs=150.6
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC----------CEEEEEEEEeCCCccchhhch
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID----------GRPIKLQIWDTAGQESFRSIT 72 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~l~D~~G~~~~~~~~ 72 (211)
+++.+||+++|++|||||||+++|..+.+...+.++.+.++....+.+. +..+.+.|||+||++.+...+
T Consensus 1 ~~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 80 (180)
T cd04127 1 YDYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLT 80 (180)
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHH
Confidence 4688999999999999999999999999988888888888877666554 456889999999999999999
Q ss_pred HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC
Q 028294 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR 151 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 151 (211)
..+++.+|++|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||+
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 999999999999999999999999999999887654 3578999999999998777778888899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 028294 152 TAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 152 ~~~~i~~~~~~i~~~~~~~ 170 (211)
++.|++++|+.|.+.+.++
T Consensus 161 ~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 161 TGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999999888654
No 32
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=6.9e-34 Score=209.01 Aligned_cols=164 Identities=28% Similarity=0.513 Sum_probs=146.8
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
....+||+++|+.|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 356789999999999999999999999998888888876664 5578899999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEE
Q 028294 83 LLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEA 148 (211)
Q Consensus 83 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 148 (211)
|+|||++++.+|.++ ..|+..+.... ++.|+++|+||+|+.+ ...++.+++++++++.++ +|+++
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 78999987765 5799999999999964 245788999999999996 89999
Q ss_pred eCCCCCC-HHHHHHHHHHHHH
Q 028294 149 SARTAQN-VEEAFIKTAAKIL 168 (211)
Q Consensus 149 s~~~~~~-i~~~~~~i~~~~~ 168 (211)
||+++.| |+++|+.+++.++
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999888643
No 33
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.7e-33 Score=204.85 Aligned_cols=167 Identities=85% Similarity=1.327 Sum_probs=153.7
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
|++.+||+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++++..+...+++.+|++
T Consensus 1 ~~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 1 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 67889999999999999999999999998888888888888888888898889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
++|||++++.++..+..|+..+.....++.|+++++||.|+.+...+..++...++...++.++++|++++.|++++|.+
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999876677888888898889999999999999999999999
Q ss_pred HHHHHHH
Q 028294 163 TAAKILQ 169 (211)
Q Consensus 163 i~~~~~~ 169 (211)
+.+.+.+
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9888754
No 34
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.8e-33 Score=204.29 Aligned_cols=164 Identities=54% Similarity=0.949 Sum_probs=150.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
+.+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 1 ~~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 1 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred CeEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 35899999999999999999999999888888888888888888888888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
|||+++++++..+..|+..+......+.|+++++||+|+.....+..+++..++...+++++++||++|.|++++|..|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 99999999999999999998877656799999999999977777778888999998999999999999999999999998
Q ss_pred HHHH
Q 028294 165 AKIL 168 (211)
Q Consensus 165 ~~~~ 168 (211)
+.+.
T Consensus 161 ~~~~ 164 (166)
T cd01869 161 REIK 164 (166)
T ss_pred HHHH
Confidence 8775
No 35
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2e-33 Score=205.24 Aligned_cols=166 Identities=33% Similarity=0.549 Sum_probs=148.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|.+|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..++..+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 479999999999999999999999998888888775553 4477889899999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|++|.
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 99999999999999888887654 35799999999999987777888889999998999999999999999999999999
Q ss_pred HHHHHHHh
Q 028294 165 AKILQNIQ 172 (211)
Q Consensus 165 ~~~~~~~~ 172 (211)
+.+.+...
T Consensus 161 ~~~~~~~~ 168 (172)
T cd04141 161 REIRRKES 168 (172)
T ss_pred HHHHHhcc
Confidence 88876443
No 36
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=1.3e-33 Score=206.33 Aligned_cols=159 Identities=33% Similarity=0.647 Sum_probs=143.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|+|||+|+.+|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++++..++..+++.+|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 68999999999999999999999998888899887664 44678999999999999999999999999999999999999
Q ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCCCC----------CCCHHHHHHHHHHcCC-cEEEEeCCCCC
Q 028294 87 DITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHRR----------AVSKEEGEQFAKENGL-LFLEASARTAQ 154 (211)
Q Consensus 87 d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 154 (211)
|++++.+|+++ ..|+..+.... .+.|+++|+||+|+.+.. .+..+++..++...+. .++++||++|.
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999998 68999887665 479999999999996542 4778899999999988 59999999999
Q ss_pred CHHHHHHHHHHHH
Q 028294 155 NVEEAFIKTAAKI 167 (211)
Q Consensus 155 ~i~~~~~~i~~~~ 167 (211)
||+++|+.+.+.+
T Consensus 160 nV~~~F~~~~~~~ 172 (176)
T cd04133 160 NVKAVFDAAIKVV 172 (176)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999876
No 37
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.9e-33 Score=210.99 Aligned_cols=165 Identities=27% Similarity=0.503 Sum_probs=142.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+|+|+.|||||+|+++|..+.+...+.++.+..+. ..+.+++..+.+.||||+|++.+..++..+++.+|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999999888898877665 4577899999999999999999999999999999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeCC
Q 028294 86 YDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASAR 151 (211)
Q Consensus 86 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 151 (211)
||++++++|+++. .|...+... .++.|+++|+||+|+.+. ..+..+++..++++.++ .|+++||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 9999999999985 565555443 458999999999999642 13677889999999996 89999999
Q ss_pred CCCC-HHHHHHHHHHHHHHHHh
Q 028294 152 TAQN-VEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 152 ~~~~-i~~~~~~i~~~~~~~~~ 172 (211)
++.+ |+++|+.+....+.+..
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhccC
Confidence 9885 99999999888766544
No 38
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=4.2e-33 Score=202.23 Aligned_cols=162 Identities=43% Similarity=0.777 Sum_probs=147.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|.+..+...+.++.+.++....+..++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998888888888887777777888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|++++++++.+..|+..+........|+++++||+|+.+.+....++..+++...+++++++||+++.|++++|+++.+.
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 161 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI 161 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999877665678999999999998776677788888888888999999999999999999999887
Q ss_pred HH
Q 028294 167 IL 168 (211)
Q Consensus 167 ~~ 168 (211)
+.
T Consensus 162 ~~ 163 (165)
T cd01865 162 IC 163 (165)
T ss_pred HH
Confidence 64
No 39
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=3.2e-33 Score=202.14 Aligned_cols=160 Identities=43% Similarity=0.838 Sum_probs=147.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
++|+++|++|+|||||+++|..+.+.+.+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 48999999999999999999999998888888888888888888998899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|++++++|..+..|+..+......+.|+++++||.|+...+.+..+++..+++..+.+++++||++|.|++++|.+|.++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 99999999999999998877655579999999999998777778888999998888999999999999999999999865
No 40
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=5e-33 Score=201.74 Aligned_cols=164 Identities=58% Similarity=0.951 Sum_probs=150.3
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
++.+||+++|++|||||||+++|.++.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++|
T Consensus 1 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 1 DYLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 46789999999999999999999999998888888888888888888988889999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+|||++++.++..+..|+..+......+.|+++++||.|+...+....++...++...+++++++||++|.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999887766579999999999998777777888888888888999999999999999999999
Q ss_pred HHHH
Q 028294 164 AAKI 167 (211)
Q Consensus 164 ~~~~ 167 (211)
.+.+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 8765
No 41
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.5e-33 Score=205.55 Aligned_cols=161 Identities=30% Similarity=0.529 Sum_probs=143.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
++||+++|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..+...+++.+|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999999999998888888877664 4578899999999999999999999999999999999999
Q ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEeCC
Q 028294 86 YDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEASAR 151 (211)
Q Consensus 86 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~ 151 (211)
||++++++|+++ ..|+..+.... ++.|+++|+||+|+.+ ...+..+++.+++...++ +|+++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 78999887765 4899999999999964 235788999999999997 79999999
Q ss_pred CCCC-HHHHHHHHHHHHH
Q 028294 152 TAQN-VEEAFIKTAAKIL 168 (211)
Q Consensus 152 ~~~~-i~~~~~~i~~~~~ 168 (211)
+|.+ ++++|..+.+..+
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999988654
No 42
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1e-34 Score=199.38 Aligned_cols=170 Identities=35% Similarity=0.701 Sum_probs=160.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
+.+||+++|..=+|||||+-+++..+|......+..-.+..+.+++.+....+.||||+|+++|.++-+.|++..+++++
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL 91 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL 91 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence 67999999999999999999999999999888887777888888899999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
|||++|+.+|+.+..|..+++......+-++||+||+|+.+++.+..++++.++...++.++++||+++.||.++|+.+.
T Consensus 92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt 171 (218)
T KOG0088|consen 92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT 171 (218)
T ss_pred EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q 028294 165 AKILQNIQEG 174 (211)
Q Consensus 165 ~~~~~~~~~~ 174 (211)
+.+++.....
T Consensus 172 ~~MiE~~s~~ 181 (218)
T KOG0088|consen 172 AKMIEHSSQR 181 (218)
T ss_pred HHHHHHhhhc
Confidence 9998877543
No 43
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=4.7e-33 Score=201.23 Aligned_cols=161 Identities=40% Similarity=0.753 Sum_probs=153.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|+.+||||||+++|.+..+.+.+.++.+.+.....+.+++..+.+.+||++|++.+..+...++..+|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 88 ITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
+++++++..+..|+..+......+.|++|++||.|+.+.+.++.++++.++..++.+|+++|++++.++.++|..+++.+
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999988876799999999999988788999999999999999999999999999999999999887
Q ss_pred H
Q 028294 168 L 168 (211)
Q Consensus 168 ~ 168 (211)
.
T Consensus 161 ~ 161 (162)
T PF00071_consen 161 L 161 (162)
T ss_dssp H
T ss_pred h
Confidence 5
No 44
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=9.3e-33 Score=205.34 Aligned_cols=165 Identities=33% Similarity=0.599 Sum_probs=144.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+|+|++|+|||||+++|+.+.+.. .+.++.+..+....+.+++..+.+.+||++|++++..++..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999998875 5777878888777888999999999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC----CCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR----RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ..+..+++..++...+++++++||+++.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999998887653 47999999999998532 34455667788888889999999999999999999
Q ss_pred HHHHHHHHHHh
Q 028294 162 KTAAKILQNIQ 172 (211)
Q Consensus 162 ~i~~~~~~~~~ 172 (211)
.|.+.+.++..
T Consensus 160 ~i~~~~~~~~~ 170 (193)
T cd04118 160 KVAEDFVSRAN 170 (193)
T ss_pred HHHHHHHHhcc
Confidence 99999976654
No 45
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=6.8e-33 Score=201.18 Aligned_cols=162 Identities=33% Similarity=0.703 Sum_probs=147.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|++..+.+.+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998888899898888888888999999999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcC-----CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHAN-----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
|++++.++..+..|+..+..... .+.|+++++||+|+.+......++...++...+++++++||+++.|++++|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 160 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ 160 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999877653 4799999999999976566777888888888889999999999999999999
Q ss_pred HHHHHHH
Q 028294 162 KTAAKIL 168 (211)
Q Consensus 162 ~i~~~~~ 168 (211)
+|.+.++
T Consensus 161 ~l~~~l~ 167 (168)
T cd04119 161 TLFSSIV 167 (168)
T ss_pred HHHHHHh
Confidence 9998775
No 46
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=3.1e-32 Score=205.27 Aligned_cols=167 Identities=51% Similarity=0.833 Sum_probs=144.9
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+...+||+|+|++|+|||||+++|.+..+. .+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 89 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI 89 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 456789999999999999999999988764 4567778888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028294 83 LLVYDITRRETFNHLSS-WLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
|+|||+++++++..+.. |...+.... ..+.|+++|+||+|+........++...++...++.|+++||+++.|++++|
T Consensus 90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~ 169 (211)
T PLN03118 90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF 169 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999976 444444332 2468999999999998766777788888888889999999999999999999
Q ss_pred HHHHHHHHHH
Q 028294 161 IKTAAKILQN 170 (211)
Q Consensus 161 ~~i~~~~~~~ 170 (211)
++|.+.+...
T Consensus 170 ~~l~~~~~~~ 179 (211)
T PLN03118 170 EELALKIMEV 179 (211)
T ss_pred HHHHHHHHhh
Confidence 9999888764
No 47
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-32 Score=199.87 Aligned_cols=163 Identities=48% Similarity=0.887 Sum_probs=147.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
++.+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 1 ~~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 1 DFLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 46799999999999999999999999888888888888888888888888889999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~ 162 (211)
+|||++++.++..+..|+..+......+.|+++|+||+|+...++...+++..+++..+. .++++|+++|.|++++|++
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999876667899999999999987777777888888888775 6899999999999999999
Q ss_pred HHHH
Q 028294 163 TAAK 166 (211)
Q Consensus 163 i~~~ 166 (211)
+.+.
T Consensus 161 l~~~ 164 (165)
T cd01864 161 MATE 164 (165)
T ss_pred HHHh
Confidence 8865
No 48
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.1e-32 Score=204.55 Aligned_cols=163 Identities=29% Similarity=0.571 Sum_probs=142.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+||+++|+.|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 4589999999999999999999999998888888876654 346788999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCC------------CCCHHHHHHHHHHcC-CcEEEEeC
Q 028294 85 VYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENG-LLFLEASA 150 (211)
Q Consensus 85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~ 150 (211)
|||++++.+|+.+. .|+..+.... .+.|+++|+||.|+.+.. .+..+++..++...+ .+++++||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999997 5877776544 489999999999996532 356678888998888 58999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 028294 151 RTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 151 ~~~~~i~~~~~~i~~~~~~ 169 (211)
++|.|++++|+.+.+.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988743
No 49
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.5e-32 Score=202.24 Aligned_cols=162 Identities=27% Similarity=0.503 Sum_probs=142.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|+.|||||||+++|+.+.+.+.+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998888999999988888889999999999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC-----CCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-----RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
|++++.++.++..|+..+........| ++|+||+|+... .....++...++...+.+++++||++|.|++++|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~ 159 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK 159 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999988776554567 678999999521 11224567778888889999999999999999999
Q ss_pred HHHHHHHH
Q 028294 162 KTAAKILQ 169 (211)
Q Consensus 162 ~i~~~~~~ 169 (211)
++.+.+.+
T Consensus 160 ~l~~~l~~ 167 (182)
T cd04128 160 IVLAKAFD 167 (182)
T ss_pred HHHHHHHh
Confidence 99988865
No 50
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.2e-32 Score=202.38 Aligned_cols=164 Identities=31% Similarity=0.567 Sum_probs=140.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+|+|++|+|||||+++|.++.+...+.++.+..+... +... +..+.+.+|||||++.+..++..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999888878777666443 4454 7788999999999999999999999999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC----CCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHH
Q 028294 86 YDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR----RAVSKEEGEQFAKENGL-LFLEASARTAQNVEEA 159 (211)
Q Consensus 86 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~ 159 (211)
||++++.+++++. .|+..+.... .+.|+++++||.|+... ..+..++..+++...+. +++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999986 4777665443 57999999999998643 24567788889988888 8999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028294 160 FIKTAAKILQNIQ 172 (211)
Q Consensus 160 ~~~i~~~~~~~~~ 172 (211)
|+.+.+.+.....
T Consensus 159 f~~l~~~~~~~~~ 171 (187)
T cd04132 159 FDTAIEEALKKEG 171 (187)
T ss_pred HHHHHHHHHhhhh
Confidence 9999999876554
No 51
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=2.5e-32 Score=197.25 Aligned_cols=160 Identities=61% Similarity=1.031 Sum_probs=147.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|++++.++..+..|+..+.....++.|+++++||.|+.....+..++...++...++.++++|++++.|++++|+++.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998877776789999999999998777778888899999999999999999999999999998865
No 52
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=4.7e-32 Score=196.15 Aligned_cols=163 Identities=61% Similarity=0.983 Sum_probs=149.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999988888888888888888888988889999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|++++.+++.+..|+..+......+.|+++++||+|+........+.+..++...+++++++|++++.|++++|+.|.+.
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~ 160 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887766689999999999997766677788888888889999999999999999999999988
Q ss_pred HHH
Q 028294 167 ILQ 169 (211)
Q Consensus 167 ~~~ 169 (211)
+.+
T Consensus 161 ~~~ 163 (164)
T smart00175 161 ILK 163 (164)
T ss_pred Hhh
Confidence 754
No 53
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=2.8e-32 Score=197.27 Aligned_cols=160 Identities=38% Similarity=0.631 Sum_probs=140.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||++++..+.+...+.++.+ ......+.+++..+.+.+|||||++++..++..+++.+|++++||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 6999999999999999999999988777777755 344455778888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|++++.++..+..|+..+..... .+.|+++++||+|+.+.+.+..++...++...+.+++++||+++.|++++|++|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999988876543 57999999999999766666777777888888889999999999999999999987
Q ss_pred HH
Q 028294 166 KI 167 (211)
Q Consensus 166 ~~ 167 (211)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 54
No 54
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=8.4e-32 Score=196.30 Aligned_cols=162 Identities=37% Similarity=0.660 Sum_probs=143.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999998999999989888888889989999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCC--CCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
+++++++..+..|+..+..... ...|+++|+||.|+.+... ...+++..++.+.+.+++++||+++.|++++|+.|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999998865543 3578999999999965433 234566777888888999999999999999999998
Q ss_pred HHHHH
Q 028294 165 AKILQ 169 (211)
Q Consensus 165 ~~~~~ 169 (211)
+.+.+
T Consensus 162 ~~~~~ 166 (170)
T cd04108 162 ALTFE 166 (170)
T ss_pred HHHHH
Confidence 88743
No 55
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=5.5e-32 Score=198.14 Aligned_cols=160 Identities=27% Similarity=0.549 Sum_probs=139.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|.+|+|||||+++|..+.+...+.++.+..+. ..+.+++..+.+.|||++|++.+..++..+++.+|++|+|
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 479999999999999999999999998888888877664 3467888889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CcEEEEeCC
Q 028294 86 YDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEASAR 151 (211)
Q Consensus 86 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~ 151 (211)
||++++++++.+. .|+..+.... .+.|+++++||+|+... +.+..+++.+++++.+ ..++++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999997 5877776654 47999999999998543 4566778888888877 689999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028294 152 TAQNVEEAFIKTAAKI 167 (211)
Q Consensus 152 ~~~~i~~~~~~i~~~~ 167 (211)
+|.|++++|+.++..+
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988754
No 56
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=8.5e-32 Score=194.60 Aligned_cols=159 Identities=36% Similarity=0.623 Sum_probs=143.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC--CEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--GRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
+||+++|++|+|||||+++|..+.+...+.++.+.++....+.+. +..+.+.+||+||++.+..++..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999999888888888888877777776 778899999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
|||+++++++..+..|+..+.... .+.|+++++||.|+..+..+..+++..++...+++++++|++++.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999998886544 4899999999999977777777888889999999999999999999999999887
Q ss_pred HH
Q 028294 165 AK 166 (211)
Q Consensus 165 ~~ 166 (211)
+.
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 53
No 57
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=8.3e-32 Score=195.15 Aligned_cols=160 Identities=39% Similarity=0.642 Sum_probs=141.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|||||||+++++.+.+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|++|+||
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 68999999999999999999988887777777665553 45778888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|++++.++..+..|+..+.... ..+.|+++++||+|+.+...+..++...+++..+.+++++||+++.|++++|.+|.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~ 160 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence 9999999999999988886643 357999999999999876666777778888888899999999999999999999987
Q ss_pred HH
Q 028294 166 KI 167 (211)
Q Consensus 166 ~~ 167 (211)
.+
T Consensus 161 ~l 162 (164)
T cd04175 161 QI 162 (164)
T ss_pred Hh
Confidence 65
No 58
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=1.2e-31 Score=194.76 Aligned_cols=160 Identities=32% Similarity=0.598 Sum_probs=141.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++++...+...+.++.+.++....+..++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988888888888888887777777888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|+++++++..+..|+..+..... +.|+++++||+|+.+. ... .+..+++...+.+++++||++|.|++++|++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 157 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence 99999999999999999987765 8999999999999743 333 33456666778899999999999999999999988
Q ss_pred HHH
Q 028294 167 ILQ 169 (211)
Q Consensus 167 ~~~ 169 (211)
+.+
T Consensus 158 ~~~ 160 (166)
T cd00877 158 LLG 160 (166)
T ss_pred HHh
Confidence 864
No 59
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=1.9e-31 Score=194.37 Aligned_cols=163 Identities=39% Similarity=0.680 Sum_probs=145.2
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
.+..+||+++|++|+|||||+++|.++.+.+.+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 35789999999999999999999999999888888888888777888899999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVE 157 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~ 157 (211)
|+|||+++++++..+..|+..+..... .+.|+++++||.|+. .+....+++.+++...+. +++++||+++.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 999999999999999999888765442 468999999999986 445677888889888874 79999999999999
Q ss_pred HHHHHHHHH
Q 028294 158 EAFIKTAAK 166 (211)
Q Consensus 158 ~~~~~i~~~ 166 (211)
++|+.+++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999998864
No 60
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.1e-31 Score=203.03 Aligned_cols=165 Identities=31% Similarity=0.534 Sum_probs=146.1
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..+||+++|.+|||||||+++++.+.+...+.++.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 46789999999999999999999999998888899898888877778888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+. ....++. .++...++.|+++||++|.|++++|++|
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l 167 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence 9999999999999999999987664 58999999999999643 3334444 6777788899999999999999999999
Q ss_pred HHHHHHHH
Q 028294 164 AAKILQNI 171 (211)
Q Consensus 164 ~~~~~~~~ 171 (211)
.+.+.+..
T Consensus 168 ~~~~~~~~ 175 (219)
T PLN03071 168 ARKLAGDP 175 (219)
T ss_pred HHHHHcCc
Confidence 99887553
No 61
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-34 Score=195.52 Aligned_cols=173 Identities=40% Similarity=0.748 Sum_probs=159.4
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC---------CEEEEEEEEeCCCccchhhch
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID---------GRPIKLQIWDTAGQESFRSIT 72 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~l~D~~G~~~~~~~~ 72 (211)
+|+|.+|.+.+|++|+|||+|+.++.+++|......++|+++..+.+-++ +..+.+++|||+|+++|+++.
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLT 84 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLT 84 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHH
Confidence 58899999999999999999999999999999999999999998877662 456889999999999999999
Q ss_pred HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC
Q 028294 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR 151 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 151 (211)
.++++.+=+++++||+++..+|.+++.|+..++.+.- .+..+++++||+|+++.+.++.+++.+++.+.++||+++||-
T Consensus 85 TAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 85 TAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 9999999999999999999999999999999876553 466688899999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhc
Q 028294 152 TAQNVEEAFIKTAAKILQNIQEG 174 (211)
Q Consensus 152 ~~~~i~~~~~~i~~~~~~~~~~~ 174 (211)
+|.++++..+.++..++++.+.-
T Consensus 165 tg~Nv~kave~LldlvM~Rie~~ 187 (219)
T KOG0081|consen 165 TGTNVEKAVELLLDLVMKRIEQC 187 (219)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988753
No 62
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=2.9e-31 Score=191.88 Aligned_cols=160 Identities=32% Similarity=0.553 Sum_probs=140.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|||||||+++|....+.+.+.++.+.++......+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999998888777777777777788888999999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|++++.++..+..|+..+.... .+.|+++++||+|+... ..++...++...+++++++||++|.|++++|+.+.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999998886643 47899999999998432 1244556666678899999999999999999999988
Q ss_pred HHHH
Q 028294 167 ILQN 170 (211)
Q Consensus 167 ~~~~ 170 (211)
+.++
T Consensus 157 ~~~~ 160 (161)
T cd04124 157 AVSY 160 (161)
T ss_pred HHhc
Confidence 8764
No 63
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=2.2e-31 Score=193.23 Aligned_cols=159 Identities=33% Similarity=0.508 Sum_probs=138.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++++++.+...+.++.+..+ ...+..+...+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999998877777765444 344567778889999999999999998899999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
|+++++++..+..|+..+..... .+.|+++|+||+|+...+.+..+++..++...++.++++||++|.|++++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 99999999999999887766532 579999999999997766677777788888888899999999999999999998
Q ss_pred HHH
Q 028294 164 AAK 166 (211)
Q Consensus 164 ~~~ 166 (211)
...
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 753
No 64
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=2.2e-31 Score=192.81 Aligned_cols=161 Identities=41% Similarity=0.649 Sum_probs=140.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|.+..+...+.++.+.. ....+.+++..+.+.+||+||++++...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 489999999999999999999998887777765533 3455677888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|+++++++..+..|+..+..... .+.|+++++||+|+.+......++...++...+.+++++||+++.|++++|++|.+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888766543 57899999999999776666777888888888899999999999999999999987
Q ss_pred HHH
Q 028294 166 KIL 168 (211)
Q Consensus 166 ~~~ 168 (211)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 654
No 65
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=3.3e-31 Score=191.29 Aligned_cols=160 Identities=41% Similarity=0.745 Sum_probs=145.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.||+++|+++||||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888888888888888888889999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|+++++++..+..|+..+......+.|+++++||+|+.+......++...++...+++++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 99999999999999998876654579999999999997666677788888888888999999999999999999998764
No 66
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=2.1e-31 Score=192.80 Aligned_cols=160 Identities=34% Similarity=0.581 Sum_probs=140.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|+|||||++++..+.+.+.+.++.+ ......+.+++..+.+.|||+||++.+..++..+++.+|++|+||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 6999999999999999999999998887777654 455566778888889999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|++++.++.++..|+..+..... .+.|+++++||+|+........++...++...+.+++++||+++.|++++|.++.+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999888876543 58999999999999765566666777887777889999999999999999999876
Q ss_pred HH
Q 028294 166 KI 167 (211)
Q Consensus 166 ~~ 167 (211)
.+
T Consensus 161 ~l 162 (163)
T cd04176 161 QM 162 (163)
T ss_pred hc
Confidence 54
No 67
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=5e-31 Score=190.72 Aligned_cols=162 Identities=48% Similarity=0.858 Sum_probs=147.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++++...+..+++.+|++|+|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998887788888888888888999999999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028294 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
+|+++++++.....|+..+........|+++++||+|+........++...++...+++++++|+++|.|++++|++|.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK 160 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999887776668999999999999766667778888888888899999999999999999999988
Q ss_pred HH
Q 028294 166 KI 167 (211)
Q Consensus 166 ~~ 167 (211)
.+
T Consensus 161 ~l 162 (163)
T cd01860 161 KL 162 (163)
T ss_pred Hh
Confidence 75
No 68
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=4.8e-31 Score=192.34 Aligned_cols=162 Identities=43% Similarity=0.808 Sum_probs=145.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh-hchHHHhccccEEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-SITRSYYRGAAGALL 84 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~~i~ 84 (211)
.++|+++|++|+|||||+++|+...+...+.++.+.++....+.+++..+.+.+||++|++.+. .++..+++.+|++|+
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4799999999999999999999998887788888888888888899999999999999999886 578888999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCC---CCCHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART---AQNVEEAF 160 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~i~~~~ 160 (211)
|||++++.++..+..|+..+.... ..+.|+++++||+|+.....+..++...++...+++++++||++ +.+++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f 161 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence 999999999999999998887654 35799999999999987777788888889888889999999999 89999999
Q ss_pred HHHHHHH
Q 028294 161 IKTAAKI 167 (211)
Q Consensus 161 ~~i~~~~ 167 (211)
..+.+.+
T Consensus 162 ~~l~~~~ 168 (170)
T cd04115 162 MTLAHKL 168 (170)
T ss_pred HHHHHHh
Confidence 9888765
No 69
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=4.6e-31 Score=190.43 Aligned_cols=159 Identities=38% Similarity=0.668 Sum_probs=138.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 6899999999999999999999988877777766554 455678888888999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|++++.++..+..|+..+.+... .+.|+++++||+|+.+ .....++...++...+.+++++||++|.|++++|+++.+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR 159 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999888876643 5789999999999965 345567777888888899999999999999999999986
Q ss_pred HH
Q 028294 166 KI 167 (211)
Q Consensus 166 ~~ 167 (211)
.+
T Consensus 160 ~~ 161 (162)
T cd04138 160 EI 161 (162)
T ss_pred Hh
Confidence 54
No 70
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=5.9e-31 Score=190.47 Aligned_cols=161 Identities=36% Similarity=0.603 Sum_probs=140.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|++|+|||||++++++..+...+.++.+..+ .....+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 47999999999999999999999888777777655444 44466888889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
||++++.++..+..|+..+.... ..+.|+++++||+|+........++...++...+++++++||++|.|++++|++|.
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 99999999999999998887653 35789999999999977666677778888888889999999999999999999998
Q ss_pred HHH
Q 028294 165 AKI 167 (211)
Q Consensus 165 ~~~ 167 (211)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 71
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=3.7e-31 Score=193.56 Aligned_cols=158 Identities=32% Similarity=0.602 Sum_probs=137.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.+|||||||+.+++.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..++..+|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 6999999999999999999999999888888866444 345678888999999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeCCC
Q 028294 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASART 152 (211)
Q Consensus 87 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 152 (211)
|++++++|..+. .|+..+.... .+.|+++|+||+|+.+. ..+..+++..++.+.+. +++++||++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999996 5777776543 58999999999999542 24677888899998884 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 028294 153 AQNVEEAFIKTAAK 166 (211)
Q Consensus 153 ~~~i~~~~~~i~~~ 166 (211)
|.|++++|+.+.+.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999988764
No 72
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.7e-31 Score=195.54 Aligned_cols=160 Identities=34% Similarity=0.589 Sum_probs=137.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.||+++|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.|||++|++.+..++..++..+|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999999999998888788766654 44667888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCC------------CCCHHHHHHHHHHcC-CcEEEEeCCC
Q 028294 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENG-LLFLEASART 152 (211)
Q Consensus 87 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~~ 152 (211)
|++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+.. .+..+++..++...+ ++++++||++
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999886 5888877654 489999999999996543 245566777777766 6899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 028294 153 AQNVEEAFIKTAAKIL 168 (211)
Q Consensus 153 ~~~i~~~~~~i~~~~~ 168 (211)
|.|++++|++|.+.++
T Consensus 159 ~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 159 NRGVNEAFTEAARVAL 174 (189)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998886
No 73
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=1.4e-30 Score=187.94 Aligned_cols=161 Identities=40% Similarity=0.762 Sum_probs=144.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|++..+.+...++.+.......+.+.+..+.+.+||+||++.+..++..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999999887777777677777777777888889999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
|+++++++..+..|+..+......+.|+++++||+|+.....+..++..+++...+.+++++|++++.|+++++++|.+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999999999999999887776689999999999998766777778888888889999999999999999999999876
Q ss_pred H
Q 028294 167 I 167 (211)
Q Consensus 167 ~ 167 (211)
+
T Consensus 161 ~ 161 (162)
T cd04123 161 M 161 (162)
T ss_pred h
Confidence 5
No 74
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.1e-30 Score=188.57 Aligned_cols=167 Identities=50% Similarity=0.873 Sum_probs=147.8
Q ss_pred CC-CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccc
Q 028294 1 MS-YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGA 79 (211)
Q Consensus 1 m~-~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~ 79 (211)
|+ +.+.++|+++|++|||||||++++..+.+.+.+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+
T Consensus 1 ~~~~~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 80 (169)
T cd04114 1 MEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (169)
T ss_pred CCCCCceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 66 45679999999999999999999998888777777878888887888899889999999999999999889999999
Q ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028294 80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159 (211)
Q Consensus 80 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 159 (211)
|++++|||+.++.++..+..|+..+......+.|+++++||+|+.+.+++..+....+......+++++|+++|.|++++
T Consensus 81 d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 81 NALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHH
Confidence 99999999999999999999998887766667999999999999776666666677777777788999999999999999
Q ss_pred HHHHHHHH
Q 028294 160 FIKTAAKI 167 (211)
Q Consensus 160 ~~~i~~~~ 167 (211)
|+.|.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998764
No 75
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=7e-31 Score=195.65 Aligned_cols=167 Identities=21% Similarity=0.261 Sum_probs=138.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh--------chHHHhcc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYRG 78 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~~~~~~~~ 78 (211)
+||+|+|.+|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999999888888877777666677889889999999999654321 13345789
Q ss_pred ccEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEeCCCCC
Q 028294 79 AAGALLVYDITRRETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQ 154 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ 154 (211)
+|++|+|||++++++++.+..|+..+.... ..+.|+++++||+|+...+....++...++. ..+++|+++||++|.
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~ 160 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW 160 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence 999999999999999999999998887654 3679999999999997766666666666654 468899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 028294 155 NVEEAFIKTAAKILQNIQE 173 (211)
Q Consensus 155 ~i~~~~~~i~~~~~~~~~~ 173 (211)
|++++|+.+.+.++.+-+.
T Consensus 161 ~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 161 HILLLFKELLISATTRGRS 179 (198)
T ss_pred CHHHHHHHHHHHhhccCCC
Confidence 9999999999888755443
No 76
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=2.4e-30 Score=188.70 Aligned_cols=165 Identities=42% Similarity=0.740 Sum_probs=145.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988888888888888777888988899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCCCCCHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~ 161 (211)
|++++.++..+..|...+..... .+.|+++++||+|+..+.....++...+++..+ .+++++|+++|.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 160 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE 160 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence 99999999998888877655432 379999999999997656667778888888877 7899999999999999999
Q ss_pred HHHHHHHHHH
Q 028294 162 KTAAKILQNI 171 (211)
Q Consensus 162 ~i~~~~~~~~ 171 (211)
.|.+.+.+..
T Consensus 161 ~i~~~~~~~~ 170 (172)
T cd01862 161 TIARKALEQE 170 (172)
T ss_pred HHHHHHHhcc
Confidence 9999887763
No 77
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.98 E-value=1.4e-30 Score=193.87 Aligned_cols=156 Identities=30% Similarity=0.587 Sum_probs=139.7
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCH
Q 028294 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 91 (211)
Q Consensus 12 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 91 (211)
+|..|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999888888888989999888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028294 92 ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 170 (211)
.++..+..|+..+.... .+.|+++|+||+|+... .+..+. ..++...++.|+++||++|.||+++|++|.+.+...
T Consensus 81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDR-KVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999998765 48999999999998643 344333 467777889999999999999999999999988765
No 78
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.98 E-value=2e-30 Score=187.87 Aligned_cols=160 Identities=31% Similarity=0.565 Sum_probs=140.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+||+++|++|||||||+++|... .+...+.++.+.++....+.++ +..+.+.+||+||++.+..++..++..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 6777888888888877777665 56789999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+|||+++++++..+..|+..+.... .+.|+++|+||+|+.+..+...++...+....+.+++++|++++.|++++|+.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999998887664 479999999999997766667666677777778899999999999999999999
Q ss_pred HHHH
Q 028294 164 AAKI 167 (211)
Q Consensus 164 ~~~~ 167 (211)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04101 160 ARAF 163 (164)
T ss_pred HHHh
Confidence 8765
No 79
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1.4e-30 Score=189.75 Aligned_cols=163 Identities=21% Similarity=0.298 Sum_probs=140.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
...+||+++|.+|||||||+++|+++.+. ..+.++.+..+....+.+++..+.+.+||++|++.+..++..++..+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 36799999999999999999999999998 78888888888877788888888999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFI 161 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~ 161 (211)
|+|||++++.++..+..|+..+... .+.|+++|+||+|+.+......++...++...+. .++++||+++.|++++|+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~ 159 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFT 159 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHH
Confidence 9999999999999988888765332 3799999999999965444333455667777776 479999999999999999
Q ss_pred HHHHHHH
Q 028294 162 KTAAKIL 168 (211)
Q Consensus 162 ~i~~~~~ 168 (211)
.|.+.+.
T Consensus 160 ~l~~~~~ 166 (169)
T cd01892 160 KLATAAQ 166 (169)
T ss_pred HHHHHhh
Confidence 9998875
No 80
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=4.4e-30 Score=185.47 Aligned_cols=159 Identities=52% Similarity=0.919 Sum_probs=142.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999887777888888888777788888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|++++.++..+..|+..+.... ..+.|+++++||+|+.. .....++...++...+++++++|+++|.|++++++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE 159 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999998887765 36899999999999973 345667888888889999999999999999999998876
Q ss_pred H
Q 028294 166 K 166 (211)
Q Consensus 166 ~ 166 (211)
.
T Consensus 160 ~ 160 (161)
T cd01863 160 K 160 (161)
T ss_pred h
Confidence 5
No 81
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=2.3e-30 Score=189.26 Aligned_cols=158 Identities=33% Similarity=0.620 Sum_probs=137.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEEC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI 88 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 88 (211)
|+|+|++|||||||+++|..+.+...+.++....+. ..+.+++..+.+.+|||||++.+..++..+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 689999999999999999999998877777655544 4567888889999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeCCCCC
Q 028294 89 TRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASARTAQ 154 (211)
Q Consensus 89 ~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 154 (211)
+++++++.+. .|+..+.... ++.|+++++||+|+... ..+..+++..++...+. .++++||+++.
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999986 5888776654 48999999999999642 23667778889998886 89999999999
Q ss_pred CHHHHHHHHHHHHH
Q 028294 155 NVEEAFIKTAAKIL 168 (211)
Q Consensus 155 ~i~~~~~~i~~~~~ 168 (211)
|++++|+.+.+.++
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998774
No 82
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.4e-30 Score=192.14 Aligned_cols=158 Identities=27% Similarity=0.452 Sum_probs=129.0
Q ss_pred eeeEEEEcCCCCCHHHHHH-HHHhCC-----CCCCCCCCeee-EEEEEE--------EEECCEEEEEEEEeCCCccchhh
Q 028294 6 LFKYIIIGDTGVGKSCLLL-QFTDKR-----FQPVHDLTIGV-EFGARM--------VTIDGRPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~l~l~D~~G~~~~~~ 70 (211)
.+||+++|+.|||||||+. ++.+.. +.+.+.|+.+. +..... ..+++..+.+.||||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 665443 34556677652 322221 25788899999999999875 3
Q ss_pred chHHHhccccEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCC-------------------CCCCC
Q 028294 71 ITRSYYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH-------------------RRAVS 130 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~-------------------~~~~~ 130 (211)
....+++.+|++|+|||++++.+|.++. .|+..+.... .+.|+++|+||+|+.+ .+.++
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4556889999999999999999999997 5888886654 4789999999999864 35678
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 131 KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
.++++.++++.+++|+++||++|.||+++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999988763
No 83
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=6.6e-30 Score=183.35 Aligned_cols=158 Identities=59% Similarity=0.983 Sum_probs=145.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++++|||||+++|.+..+...+.++.+.++....+..++....+.+||+||++.+...+..+++++|++|+|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999998888888899998888888888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
|+++++++..+..|+..+........|+++++||+|+........++...++...+.+++++|++++.|+++++++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 999999999999999988887656899999999999975566677888889888899999999999999999999875
No 84
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=1.2e-29 Score=194.71 Aligned_cols=160 Identities=26% Similarity=0.464 Sum_probs=138.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|+.+.+...+.++.+ ++....+.+++..+.+.||||+|++.+..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999998877777765 555566788898999999999999999888888899999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHh---------cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCcEEEEeCCCCCCH
Q 028294 87 DITRRETFNHLSSWLEDARQH---------ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNV 156 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i 156 (211)
|++++++|+.+..|+..+... ...+.|+++++||+|+.....+..+++.+++.. .++.++++||+++.|+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999998888654 224799999999999976566777777777654 4678999999999999
Q ss_pred HHHHHHHHHHH
Q 028294 157 EEAFIKTAAKI 167 (211)
Q Consensus 157 ~~~~~~i~~~~ 167 (211)
+++|++|.+..
T Consensus 160 ~elf~~L~~~~ 170 (247)
T cd04143 160 DEMFRALFSLA 170 (247)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 85
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=8.2e-30 Score=185.48 Aligned_cols=161 Identities=39% Similarity=0.636 Sum_probs=141.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
++|+++|++|+|||||+++|.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.++++++||
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 6899999999999999999999998777777766444 456778888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCCCCCHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
|++++++++.+..|...+.... ..+.|+++++||.|+.+.+....++...+++..+ ++++++||+++.|++++|+++.
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~ 160 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV 160 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999999988887643 3579999999999997767777777778887777 7899999999999999999998
Q ss_pred HHHH
Q 028294 165 AKIL 168 (211)
Q Consensus 165 ~~~~ 168 (211)
..++
T Consensus 161 ~~~~ 164 (168)
T cd04177 161 RQII 164 (168)
T ss_pred HHHh
Confidence 7654
No 86
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=5.7e-30 Score=184.39 Aligned_cols=153 Identities=21% Similarity=0.381 Sum_probs=129.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|+.|||||||+++++.+.+.+.+.++ +..+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 48999999999999999999988887765444 4444 35678899889999999999974 34667899999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCC--CCCCCCHHHHHHHHHHc-CCcEEEEeCCCCCCHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLA--HRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|++++.+|+++..|+..+..... .+.|+++++||.|+. ..+.+..++++++++.. ++.|+++||+++.||+++|..
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999877653 578999999999985 34667778888888776 589999999999999999999
Q ss_pred HHHH
Q 028294 163 TAAK 166 (211)
Q Consensus 163 i~~~ 166 (211)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8754
No 87
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=3.9e-30 Score=186.62 Aligned_cols=160 Identities=39% Similarity=0.586 Sum_probs=136.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-hhhchHHHhccccEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~d~~i~v~ 86 (211)
||+++|++|+|||||+++++...+...+.++.+..+ ...+.+++..+.+.+||+||++. .......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 689999999999999999998888766666654343 45567888899999999999885 3445677889999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCC-CCHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA-QNVEEAFIKT 163 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~i~~~~~~i 163 (211)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+.+++++|++++ .|++++|+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887754 357999999999999776677778888899888999999999999 5999999999
Q ss_pred HHHHH
Q 028294 164 AAKIL 168 (211)
Q Consensus 164 ~~~~~ 168 (211)
.+.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 88664
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=1.1e-29 Score=192.42 Aligned_cols=164 Identities=30% Similarity=0.402 Sum_probs=139.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhc-cccEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR-GAAGALL 84 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~-~~d~~i~ 84 (211)
+||+++|++|+|||||+++|..+.+. ..+.++.+.++....+.+++....+.+||+||++ ......++. .+|++|+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999988876 5666665557777778888889999999999998 233445566 8999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.....+..++..+++...+++++++||+++.|++++|++|
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l 158 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI 158 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999988876542 579999999999997777777777888888888999999999999999999999
Q ss_pred HHHHHHHHh
Q 028294 164 AAKILQNIQ 172 (211)
Q Consensus 164 ~~~~~~~~~ 172 (211)
.+.+.....
T Consensus 159 ~~~~~~~~~ 167 (221)
T cd04148 159 VRQIRLRRD 167 (221)
T ss_pred HHHHHhhhc
Confidence 988864443
No 89
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=1.8e-29 Score=184.56 Aligned_cols=159 Identities=29% Similarity=0.552 Sum_probs=135.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|..+.+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++|+||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999998777777755443 345678888889999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeCCC
Q 028294 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASART 152 (211)
Q Consensus 87 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 152 (211)
|+.++.+++.+. .|+..+... ..+.|+++++||+|+.+. ..+..+++..+++..+. +++++||++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 999999999886 577777655 568999999999998543 24666778888888886 699999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028294 153 AQNVEEAFIKTAAKI 167 (211)
Q Consensus 153 ~~~i~~~~~~i~~~~ 167 (211)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 90
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=3.1e-29 Score=183.26 Aligned_cols=157 Identities=30% Similarity=0.572 Sum_probs=134.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+|++++|++|+|||||++++..+.+...+.++. .+.....+.+++..+.+.+||+||++.+..++..+++.+|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999998888777774 4444556778888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEEEeCCC
Q 028294 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLEASART 152 (211)
Q Consensus 87 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 152 (211)
|++++.+++.+. .|+..+.... .+.|+++++||.|+.. .+.+..+++..++...+. .++++||++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999999885 6877776533 4799999999999853 345667788889988887 899999999
Q ss_pred CCCHHHHHHHHHH
Q 028294 153 AQNVEEAFIKTAA 165 (211)
Q Consensus 153 ~~~i~~~~~~i~~ 165 (211)
|.|++++|+.++-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988753
No 91
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=9.2e-32 Score=179.88 Aligned_cols=161 Identities=43% Similarity=0.838 Sum_probs=150.3
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEEC
Q 028294 10 IIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDI 88 (211)
Q Consensus 10 ~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 88 (211)
+++|++++|||.|+-++.++.|. .+..+++|+++.-+.+.+++..+++++|||+|++++++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 37899999999999999888775 45678899999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 89 TRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
.+..+|++.+.|+.++.++....+.+.+++||+|+..++.+..++++++++..++||+++|+++|.+++-.|-.|.+.+.
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999998888889999999999888888889999999999999999999999999999999988876
Q ss_pred HH
Q 028294 169 QN 170 (211)
Q Consensus 169 ~~ 170 (211)
+.
T Consensus 161 k~ 162 (192)
T KOG0083|consen 161 KL 162 (192)
T ss_pred Hh
Confidence 54
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=6.5e-29 Score=179.62 Aligned_cols=161 Identities=40% Similarity=0.641 Sum_probs=140.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|+...+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999888777776655444 345678888899999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|++++.++..+..|+..+..... .+.|+++++||+|+.+......++...++...+++++++|++++.|++++|+.+.+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 99999999999999888877643 58999999999999764555667777888888899999999999999999999987
Q ss_pred HHH
Q 028294 166 KIL 168 (211)
Q Consensus 166 ~~~ 168 (211)
.+.
T Consensus 160 ~~~ 162 (164)
T cd04139 160 EIR 162 (164)
T ss_pred HHH
Confidence 764
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=7.9e-29 Score=178.37 Aligned_cols=158 Identities=40% Similarity=0.647 Sum_probs=139.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|++|||||||+++|++..+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777777655 5556667778778899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
+++++++..+..|+..+..... ...|+++++||+|+........+++..++...+.+++++|++++.|++++|++|.+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999988877654 689999999999998766677788888888888999999999999999999998865
No 94
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.5e-28 Score=181.93 Aligned_cols=161 Identities=32% Similarity=0.566 Sum_probs=134.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.||+|+|++|+|||||+++|..+.+.+.+.++....+ ...+.+++..+.+.+||++|++.+......++..+|++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998887766666654444 345677888889999999999988877777889999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCC----------CCCCCHHHHHHHHHHcCC-cEEEEeCCCCC
Q 028294 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH----------RRAVSKEEGEQFAKENGL-LFLEASARTAQ 154 (211)
Q Consensus 87 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 154 (211)
|+++++++..+. .|+..+.... ++.|+++|+||+|+.+ .+.+..++...+++..+. +++++||++|.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999986 5888876654 4799999999999854 234455677888888885 79999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 028294 155 NVEEAFIKTAAKILQ 169 (211)
Q Consensus 155 ~i~~~~~~i~~~~~~ 169 (211)
|++++|+.+.+.++.
T Consensus 160 ~v~~~f~~l~~~~~~ 174 (187)
T cd04129 160 GVDDVFEAATRAALL 174 (187)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999987743
No 95
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.2e-28 Score=181.68 Aligned_cols=169 Identities=22% Similarity=0.324 Sum_probs=133.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
..+||+++|++|||||||++++....+... .++.+.+.....+.. ++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 358999999999999999999998887654 455565555544444 446688999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH------cCCcEEEEeCCCCCCH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------NGLLFLEASARTAQNV 156 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~i 156 (211)
+|||++++.++.....|+..+.... ..+.|+++++||+|+.+ ....++...+... .+++++++||+++.|+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 9999999998888888887776543 25799999999999864 2334444444321 1246889999999999
Q ss_pred HHHHHHHHHHHHHHHhhccc
Q 028294 157 EEAFIKTAAKILQNIQEGAL 176 (211)
Q Consensus 157 ~~~~~~i~~~~~~~~~~~~~ 176 (211)
++++++|.+.+.+..+...+
T Consensus 159 ~~l~~~l~~~l~~~~~~~~~ 178 (183)
T cd04152 159 QEGLEKLYEMILKRRKMLRQ 178 (183)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 99999999999877665443
No 96
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=3.9e-28 Score=177.65 Aligned_cols=159 Identities=31% Similarity=0.602 Sum_probs=133.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.||+++|++|||||||+++|....+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++..+|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 68999999999999999999999988777777665553 35678888899999999999999988888899999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeCCC
Q 028294 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASART 152 (211)
Q Consensus 87 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~ 152 (211)
|+++++++.++. .|...+.... .+.|+++++||+|+... ..+...+.+.++...+. .++++||++
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998885 5777766543 47999999999998542 22345667777777664 799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028294 153 AQNVEEAFIKTAAKI 167 (211)
Q Consensus 153 ~~~i~~~~~~i~~~~ 167 (211)
|.|++++|++|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 97
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=5.8e-28 Score=177.58 Aligned_cols=163 Identities=36% Similarity=0.550 Sum_probs=139.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.||+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++++...+..++..+|++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999999888766666654444 344667878888999999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
|+++..+++.+..|+..+.... ..+.|+++++||+|+........++...++...+.+++++|++++.|+.++|+++.+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999888876654 357899999999999766666666777788878889999999999999999999998
Q ss_pred HHHHH
Q 028294 166 KILQN 170 (211)
Q Consensus 166 ~~~~~ 170 (211)
.+...
T Consensus 161 ~~~~~ 165 (180)
T cd04137 161 EIEKV 165 (180)
T ss_pred HHHHh
Confidence 87544
No 98
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.97 E-value=6.8e-31 Score=184.11 Aligned_cols=172 Identities=31% Similarity=0.529 Sum_probs=164.0
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
++|..+|++|+|..++||||++++++.+-|...+..++++++....+.+++..+++.+||++|++++..+..+|++.+.+
T Consensus 16 d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 16 DYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
.++||+.+|..+|+.+..|++.+....+ .+|.++|-||+|+.++..+...+.+.+++..+..++.+|++...|+..+|.
T Consensus 96 ~vLVFSTTDr~SFea~~~w~~kv~~e~~-~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~ 174 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEATLEWYNKVQKETE-RIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFA 174 (246)
T ss_pred eEEEEecccHHHHHHHHHHHHHHHHHhc-cCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Confidence 9999999999999999999999987775 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 028294 162 KTAAKILQNIQEG 174 (211)
Q Consensus 162 ~i~~~~~~~~~~~ 174 (211)
.|.+++.++..+.
T Consensus 175 YLaeK~~q~~kq~ 187 (246)
T KOG4252|consen 175 YLAEKLTQQKKQS 187 (246)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988873
No 99
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=7.2e-28 Score=179.74 Aligned_cols=160 Identities=26% Similarity=0.412 Sum_probs=133.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|++|+|||||+++|+...+...+.++.. ......+.+.+..+.+.+||+||+..+..++..++..+|++|+|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999988776666643 4445567788888899999999999998888899999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCC-CCCCCHHHHHHHHH-HcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAH-RRAVSKEEGEQFAK-ENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
++++.+++.+..|+..+..... .+.|+++++||+|+.. ...+..++..+... ..+.+++++||++|.|++++|++|.
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~ 159 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL 159 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999888877654 5799999999999965 34444444444443 3467899999999999999999999
Q ss_pred HHHH
Q 028294 165 AKIL 168 (211)
Q Consensus 165 ~~~~ 168 (211)
+.+.
T Consensus 160 ~~~~ 163 (198)
T cd04147 160 RQAN 163 (198)
T ss_pred HHhh
Confidence 8775
No 100
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=4.1e-29 Score=181.11 Aligned_cols=153 Identities=22% Similarity=0.359 Sum_probs=125.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
.|+++|++|||||||+++|.+..+...+.++.+... ..++...+.+.+||+||++.+...+..+++.+|++|+|||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999998888777777766543 3345567889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCH----HHHHHHHHHcCCcEEEEeCCC------CCCHH
Q 028294 88 ITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK----EEGEQFAKENGLLFLEASART------AQNVE 157 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~------~~~i~ 157 (211)
++++.++.....|+..+.... .+.|+++|+||.|+........ .++..++.+.++.++++||++ ++|++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~ 155 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence 999999998888888775443 5899999999999966443221 123445556678899999998 99999
Q ss_pred HHHHHHHH
Q 028294 158 EAFIKTAA 165 (211)
Q Consensus 158 ~~~~~i~~ 165 (211)
++|+.++.
T Consensus 156 ~~~~~~~~ 163 (164)
T cd04162 156 DLLSQLIN 163 (164)
T ss_pred HHHHHHhc
Confidence 99988763
No 101
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=2.2e-27 Score=179.31 Aligned_cols=167 Identities=31% Similarity=0.547 Sum_probs=145.6
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|.....+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||++|++.+..++..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 45668899999999999999999999988888888899999888888888889999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
++|+|||+++..++..+..|+..+.... .+.|+++++||+|+.+. ....+ ...++...++.++++|++++.|+++.|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVKAR-QITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998887654 47999999999998643 23333 345666778899999999999999999
Q ss_pred HHHHHHHHHH
Q 028294 161 IKTAAKILQN 170 (211)
Q Consensus 161 ~~i~~~~~~~ 170 (211)
.+|.+.+...
T Consensus 161 ~~ia~~l~~~ 170 (215)
T PTZ00132 161 LWLARRLTND 170 (215)
T ss_pred HHHHHHHhhc
Confidence 9999888654
No 102
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=3.1e-28 Score=179.18 Aligned_cols=159 Identities=18% Similarity=0.302 Sum_probs=123.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..+||+++|..+||||||+++|..+.+. .+.++.+.+.. .+.. ..+.+.+||+||++.+..++..+++.+|++|
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI 89 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 89 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 35689999999999999999999877665 35566665543 2333 4577999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-----CcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-----LLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~ 157 (211)
+|||+++++++.....++..+... ...+.|++|++||.|++.. ...++......... ..++++||++|.|++
T Consensus 90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999988887776665432 2247999999999999653 33444444332222 235689999999999
Q ss_pred HHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQ 169 (211)
Q Consensus 158 ~~~~~i~~~~~~ 169 (211)
++|++|.+.+.+
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999887754
No 103
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=1.4e-27 Score=173.91 Aligned_cols=157 Identities=34% Similarity=0.626 Sum_probs=130.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|+++.+...+.++.... .......++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDN-YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 589999999999999999999999876666664433 3445677888899999999999988888888889999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCC-----------CCCHHHHHHHHHHcCC-cEEEEeCCCC
Q 028294 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR-----------AVSKEEGEQFAKENGL-LFLEASARTA 153 (211)
Q Consensus 87 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~s~~~~ 153 (211)
|++++.++.... .|+..+.... .+.|+++++||+|+.... .+..++...++...+. +++++|++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999999987765 4666665544 489999999999986543 2346677778777777 8999999999
Q ss_pred CCHHHHHHHHHH
Q 028294 154 QNVEEAFIKTAA 165 (211)
Q Consensus 154 ~~i~~~~~~i~~ 165 (211)
.|++++|+.|.+
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999998875
No 104
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=3.1e-28 Score=177.14 Aligned_cols=155 Identities=20% Similarity=0.346 Sum_probs=122.9
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|++|||||||+++|....+.. +.++.+.++. .+.. ..+.+.+||+||++.+..++..+++.+|++|
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 346899999999999999999998777643 4566666553 2333 4578999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~ 157 (211)
+|||++++.++.....|+..+... ...+.|+++++||+|+.+ ....+++...... ....++++||++|.|++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 999999999998888877666443 225789999999999864 2455666665432 23468999999999999
Q ss_pred HHHHHHHH
Q 028294 158 EAFIKTAA 165 (211)
Q Consensus 158 ~~~~~i~~ 165 (211)
++|++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99998864
No 105
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=4.1e-28 Score=176.75 Aligned_cols=156 Identities=22% Similarity=0.371 Sum_probs=124.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|+++||||||+++|.+..+.. +.++.+..+. .+.. ..+.+.+||+||++.+...+..++..+|++|+|||
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999999999999886643 5556555553 2333 45778999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC------CcEEEEeCCCCCCHHHHH
Q 028294 88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG------LLFLEASARTAQNVEEAF 160 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~~ 160 (211)
++++.++..+..|+..+.... ..+.|++|++||+|+.+ ....+++..++...+ +.++++||++|.|++++|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 999999999988888876543 24689999999999964 355566666554222 358899999999999999
Q ss_pred HHHHHHHHHH
Q 028294 161 IKTAAKILQN 170 (211)
Q Consensus 161 ~~i~~~~~~~ 170 (211)
++|.+.+...
T Consensus 154 ~~l~~~~~~~ 163 (169)
T cd04158 154 DWLSRQLVAA 163 (169)
T ss_pred HHHHHHHhhc
Confidence 9998776543
No 106
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=2e-28 Score=179.30 Aligned_cols=157 Identities=20% Similarity=0.315 Sum_probs=122.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..+||+++|++|||||||+++|..+.+. .+.++.+..+.. +.. ..+.+.+||+||++.+...+..+++.+|++|
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 34689999999999999999999877664 355666655532 333 3577999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~ 157 (211)
+|||++++.++.....|+..+.... ..+.|++|++||.|+.+.. ..++....... ..+.++++||++|.|++
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 9999999999998888887765432 2478999999999996432 33333332211 23347789999999999
Q ss_pred HHHHHHHHHH
Q 028294 158 EAFIKTAAKI 167 (211)
Q Consensus 158 ~~~~~i~~~~ 167 (211)
++|++|.+.+
T Consensus 164 e~~~~l~~~~ 173 (175)
T smart00177 164 EGLTWLSNNL 173 (175)
T ss_pred HHHHHHHHHh
Confidence 9999987764
No 107
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=1.7e-28 Score=177.08 Aligned_cols=152 Identities=20% Similarity=0.337 Sum_probs=117.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|.++||||||++++..+.+. .+.++.+.... .+.. ..+.+.+||+||++++...+..+++.+|++|+||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999877775 35666665543 2333 3577899999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~ 160 (211)
|++++.++.....|+..+... ...+.|+++++||.|+.+. ...++...... ..++.++++||++|.|++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999888877766432 2246899999999999643 22333222221 123357899999999999999
Q ss_pred HHHHH
Q 028294 161 IKTAA 165 (211)
Q Consensus 161 ~~i~~ 165 (211)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 98864
No 108
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=1.4e-27 Score=176.58 Aligned_cols=167 Identities=39% Similarity=0.585 Sum_probs=152.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
...+|+++|.+|+|||+|+.+|....|...+.++.+ +.+.+.+.+++..+.+.|+||+|++.+......++...|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 357999999999999999999999999999999977 5566678899999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
||+++++.+|+.+..+++.+.+... ...|+++|+||+|+...+.+..+++..++...+++|+++||+.+.+++++|..|
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999955443 568999999999999889999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 028294 164 AAKILQNIQ 172 (211)
Q Consensus 164 ~~~~~~~~~ 172 (211)
++.+.....
T Consensus 161 ~r~~~~~~~ 169 (196)
T KOG0395|consen 161 VREIRLPRE 169 (196)
T ss_pred HHHHHhhhc
Confidence 998866333
No 109
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.6e-27 Score=177.41 Aligned_cols=148 Identities=22% Similarity=0.417 Sum_probs=126.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-----CEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-----GRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+||+++|+.|+|||||+++|..+.+...+.++++.++..+.+.++ +..+.+.|||++|++.+..++..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999988888898888877777664 567899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-------------------CCCCeEEEEEecCCCCCCCCCCHHH----HHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHA-------------------NPNMSIMLVGNKCDLAHRRAVSKEE----GEQFA 138 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-------------------~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~ 138 (211)
+|+|||++++.+++++..|+..+.... ..+.|++||+||.|+.+++....+. ...++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999999986632 2468999999999997655444432 34567
Q ss_pred HHcCCcEEEEeCCCCC
Q 028294 139 KENGLLFLEASARTAQ 154 (211)
Q Consensus 139 ~~~~~~~~~~s~~~~~ 154 (211)
.+.+++.++.++++..
T Consensus 161 ~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 161 EQGNAEEINLNCTNGR 176 (202)
T ss_pred HhcCCceEEEecCCcc
Confidence 7789999888888643
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=2.5e-27 Score=174.51 Aligned_cols=160 Identities=23% Similarity=0.338 Sum_probs=122.9
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...+||+++|++|||||||++++..+.+.. +.++.+.++. .+.. ..+.+.+||+||++.+..++..+++.+|++|
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI 89 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI 89 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 346899999999999999999998777654 4566665543 2333 4577999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~ 157 (211)
+|||+++++++.....++..+... ...+.|++|++||.|+.+. ...++....... ..+.++++||++|.|++
T Consensus 90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999998888777666432 2246899999999998542 233333222211 22346789999999999
Q ss_pred HHHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQN 170 (211)
Q Consensus 158 ~~~~~i~~~~~~~ 170 (211)
++|++|.+.+.+.
T Consensus 168 e~~~~l~~~i~~~ 180 (182)
T PTZ00133 168 EGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877654
No 111
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=4.3e-27 Score=170.85 Aligned_cols=160 Identities=28% Similarity=0.376 Sum_probs=123.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|||||||+++|.++.+...+..+ .... .....+++..+.+.+|||||.+.+...+..++..+|++++||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999999886553332 2222 233456677889999999999888777778889999999999
Q ss_pred ECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC--HHHHHHHHHHc-C-CcEEEEeCCCCCCHHHHHH
Q 028294 87 DITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKEN-G-LLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 87 d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~~-~-~~~~~~s~~~~~~i~~~~~ 161 (211)
|++++.++..+. .|+..+.... .+.|+++++||+|+.+..... .++...+.... + .+++++||+++.|++++|+
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999975 5767666554 489999999999996644321 22233333332 2 3799999999999999999
Q ss_pred HHHHHHHH
Q 028294 162 KTAAKILQ 169 (211)
Q Consensus 162 ~i~~~~~~ 169 (211)
.+.+.++.
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887753
No 112
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=2.7e-27 Score=173.00 Aligned_cols=155 Identities=21% Similarity=0.319 Sum_probs=122.1
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..++|+++|++|+|||||+++|.+..+. .+.++.+. ....+.++ .+.+.+||+||++.+...+..++..+|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGF--QIKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCcccc--ceEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45689999999999999999999987543 34455453 33344455 467899999999999888999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 157 (211)
+|||++++.++.....|+..+... ...+.|+++++||+|+.+.. ..+++..... ..+++++++||++|.|++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 164 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGLL 164 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence 999999999998888887776442 23589999999999996532 4455555443 235679999999999999
Q ss_pred HHHHHHHH
Q 028294 158 EAFIKTAA 165 (211)
Q Consensus 158 ~~~~~i~~ 165 (211)
++|+++.+
T Consensus 165 ~l~~~l~~ 172 (173)
T cd04154 165 QGIDWLVD 172 (173)
T ss_pred HHHHHHhc
Confidence 99998864
No 113
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=6.9e-28 Score=174.81 Aligned_cols=167 Identities=35% Similarity=0.610 Sum_probs=147.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
...+|++|||+.++|||+|+-.+..+.|+..+.|++. +.+...+.++ +..+.+.+|||+|++.|..+++..++++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 4579999999999999999999999999999999987 4455557884 9999999999999999999998999999999
Q ss_pred EEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEE
Q 028294 83 LLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEA 148 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 148 (211)
++||++.++.++.++. .|+.++..+. ++.|+++|++|.||.++ ..+..+++...+++.|+ .|+++
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 9999999999999975 7989888877 69999999999999742 35777889999999994 69999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHh
Q 028294 149 SARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 149 s~~~~~~i~~~~~~i~~~~~~~~~ 172 (211)
||+++.|++++|+......+....
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhcccc
Confidence 999999999999998888765443
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=2e-26 Score=168.60 Aligned_cols=155 Identities=26% Similarity=0.341 Sum_probs=120.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|++|+|||||+++|..+.+.. ..++.+.++. .+.++ .+.+.+||+||++.+...+..+++.+|++|
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 87 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVI 87 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 346899999999999999999999877764 4556565543 23333 577899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~ 157 (211)
+|+|+++++++.....++..+.... ..+.|+++++||+|+.+. ...++..+.. ...+++++++||++|.|++
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~ 165 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLP 165 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence 9999999988888777766664432 247999999999998652 2334332222 2234579999999999999
Q ss_pred HHHHHHHH
Q 028294 158 EAFIKTAA 165 (211)
Q Consensus 158 ~~~~~i~~ 165 (211)
++|++|.+
T Consensus 166 e~~~~l~~ 173 (174)
T cd04153 166 EGLDWIAS 173 (174)
T ss_pred HHHHHHhc
Confidence 99999864
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=1.2e-26 Score=167.59 Aligned_cols=152 Identities=19% Similarity=0.319 Sum_probs=116.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+|+++|++|||||||+++|.+... ...+.++.+.+... + ....+.+.+||+||++.+..++..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--F--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--E--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 44555666644322 2 234577899999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhc---CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEE 158 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~ 158 (211)
|++++.++.....|+..+.... ..+.|+++++||+|+.+.. ..++...... .....++++||++|.|+++
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 9999999888888877765432 2579999999999996532 2233222211 1234589999999999999
Q ss_pred HHHHHHH
Q 028294 159 AFIKTAA 165 (211)
Q Consensus 159 ~~~~i~~ 165 (211)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9998854
No 116
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=6.8e-27 Score=169.97 Aligned_cols=151 Identities=21% Similarity=0.298 Sum_probs=118.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
+|+++|++|||||||+++|.+. +...+.++.+... ..+.. ..+.+.+||+||++.+..++..+++.+|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999976 5556667766543 23344 35678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHH------HHHHHHcC--CcEEEEeCCCC-----
Q 028294 88 ITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEG------EQFAKENG--LLFLEASARTA----- 153 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~------~~~~~~~~--~~~~~~s~~~~----- 153 (211)
++++.++..+..|+..+..... .+.|+++++||.|+.+... ..+. ..++.+.+ +.++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~ 153 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL--GADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKI 153 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC--HHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcc
Confidence 9999999999989888765432 5799999999999965432 2222 22232222 45788999998
Q ss_pred -CCHHHHHHHHHH
Q 028294 154 -QNVEEAFIKTAA 165 (211)
Q Consensus 154 -~~i~~~~~~i~~ 165 (211)
.|+++.|+||.+
T Consensus 154 ~~g~~~~~~wl~~ 166 (167)
T cd04161 154 DPSIVEGLRWLLA 166 (167)
T ss_pred ccCHHHHHHHHhc
Confidence 899999999975
No 117
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=1.2e-25 Score=164.37 Aligned_cols=141 Identities=42% Similarity=0.692 Sum_probs=127.3
Q ss_pred CCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhc
Q 028294 29 KRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA 108 (211)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 108 (211)
+.|.+.+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|++|+|||++++.+|+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 35677888999999988888999999999999999999999999999999999999999999999999999999887665
Q ss_pred CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Q 028294 109 NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 109 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~ 169 (211)
..+.|+++|+||+|+.+.+.+..+++..++...+..++++||++|.|++++|++|.+.+.+
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5678999999999997766678888888888888899999999999999999999988754
No 118
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=1.1e-25 Score=175.54 Aligned_cols=140 Identities=24% Similarity=0.497 Sum_probs=122.1
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC-------------EEEEEEEEeCCCccchhh
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-------------RPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~l~D~~G~~~~~~ 70 (211)
...+||+|+|+.|||||||+++|.+..+...+.++++.++....+.+++ ..+.+.||||+|++.+..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 3578999999999999999999999999888889999988877777653 468899999999999999
Q ss_pred chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcC------------CCCeEEEEEecCCCCCCC---C---CCHH
Q 028294 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN------------PNMSIMLVGNKCDLAHRR---A---VSKE 132 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~Dl~~~~---~---~~~~ 132 (211)
++..+++.+|++|+|||++++.++.++..|+..+..... .+.|++||+||+|+.+.+ . ...+
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e 178 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD 178 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence 999999999999999999999999999999999977531 258999999999996542 2 3578
Q ss_pred HHHHHHHHcCC
Q 028294 133 EGEQFAKENGL 143 (211)
Q Consensus 133 ~~~~~~~~~~~ 143 (211)
++++++.++++
T Consensus 179 ~a~~~A~~~g~ 189 (334)
T PLN00023 179 AARQWVEKQGL 189 (334)
T ss_pred HHHHHHHHcCC
Confidence 89999998875
No 119
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=4.1e-26 Score=169.19 Aligned_cols=157 Identities=27% Similarity=0.347 Sum_probs=124.0
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+....+|+++|++|||||||+++|.+..+. .+.++.+.+. ..+.+++ ..+.+||+||++.+...+..+++.+|++
T Consensus 16 ~~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 16 YNKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 346789999999999999999999987764 3444544433 3345554 5688999999999888899999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH----------------cCCcE
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE----------------NGLLF 145 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~~~~ 145 (211)
++|+|+++..++.....|+..+.... ..+.|+++++||+|+.. ....++.+..... ....+
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence 99999999988888888877776543 25799999999999854 3455666655532 22458
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 028294 146 LEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 146 ~~~s~~~~~~i~~~~~~i~~~ 166 (211)
+++||+++.|++++|++|.+.
T Consensus 169 ~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 169 FMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEeEecCCCChHHHHHHHHhh
Confidence 999999999999999999865
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=2.3e-26 Score=165.87 Aligned_cols=152 Identities=24% Similarity=0.408 Sum_probs=117.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
+|+++|++|||||||+++|.+..+... .++.+.+. ..+... ..+.+.+||+||++.+...+..++..+|++|+|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999998887543 45545443 233333 35789999999999999889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH------HHcCCcEEEEeCCCCCCHHHHH
Q 028294 88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA------KENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
+.++.++.....|+..+.... ..+.|+++++||+|+... ...++..... ...+++++++||++|.|++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 999998888888877765432 258999999999998642 2233333221 1234568999999999999999
Q ss_pred HHHHH
Q 028294 161 IKTAA 165 (211)
Q Consensus 161 ~~i~~ 165 (211)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 98864
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=3.6e-26 Score=164.56 Aligned_cols=151 Identities=22% Similarity=0.326 Sum_probs=118.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|++|||||||++++++... ....++.+.+.. .+.++ ...+.+||+||++.+...+..+++.+|++++|||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998873 334445454443 23343 4678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHHHHH
Q 028294 88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
++++.++.....|+..+.... ..+.|+++++||+|+.... ..++...... ....+++++|+++|.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 999999998888887775533 3589999999999986533 2333333322 2345799999999999999999
Q ss_pred HHHH
Q 028294 162 KTAA 165 (211)
Q Consensus 162 ~i~~ 165 (211)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 8864
No 122
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.94 E-value=7.5e-26 Score=164.27 Aligned_cols=152 Identities=27% Similarity=0.390 Sum_probs=116.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCC------CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQ------PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+|+++|++|+|||||+++|.+.... ..+.++.+... ..+.++ ...+.+||+||++.+...+..++..+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 5899999999999999999864321 12233433333 234444 4678999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-------cCCcEEEEeCCCC
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-------NGLLFLEASARTA 153 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~ 153 (211)
+++|+|+.++.++.....|+..+.+.. ..+.|+++++||+|+... ...++...+... .+++++++||++|
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999988888888877765532 358999999999998653 333444444332 2457999999999
Q ss_pred CCHHHHHHHHHH
Q 028294 154 QNVEEAFIKTAA 165 (211)
Q Consensus 154 ~~i~~~~~~i~~ 165 (211)
.|+++++++|.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999998864
No 123
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=9.5e-26 Score=162.45 Aligned_cols=151 Identities=23% Similarity=0.326 Sum_probs=113.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
||+++|++++|||||+++|..+.+.. ..++.+.+.. .+.. ....+.+||+||++.+...+..+++.+|++|+|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776653 3445444432 2333 45678999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH-hcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHHHHH
Q 028294 88 ITRRETFNHLSSWLEDARQ-HANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~-~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
++++.++.....++..+.. ....+.|+++++||+|+.+.. ...+...... ..+.+++++||+++.|++++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9998887766665554432 223579999999999986432 2233222211 1234699999999999999999
Q ss_pred HHHH
Q 028294 162 KTAA 165 (211)
Q Consensus 162 ~i~~ 165 (211)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9865
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=9.2e-26 Score=165.09 Aligned_cols=159 Identities=29% Similarity=0.448 Sum_probs=124.3
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.+...++|+++|+.|||||||+++|....... ..||.|.+. ..+.+++ ..+.+||.+|+..+...|..++..+|+
T Consensus 10 ~~~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~~--~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~ 84 (175)
T PF00025_consen 10 SKKKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFNI--EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADG 84 (175)
T ss_dssp TTTSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEEE--EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred ccCcEEEEEEECCCccchHHHHHHhhhccccc-cCccccccc--ceeeeCc--EEEEEEeccccccccccceeeccccce
Confidence 35788999999999999999999998765433 344444443 3345554 567899999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH------cCCcEEEEeCCCCC
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------NGLLFLEASARTAQ 154 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~ 154 (211)
+|||+|.++++.+......+..+... ...+.|++|++||.|+++ .+..+++...... ..+.++.+|+.+|+
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~ 162 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGE 162 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTB
T ss_pred eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeeeccCCc
Confidence 99999999988887777666665443 235899999999999865 3455665554432 23458999999999
Q ss_pred CHHHHHHHHHHHH
Q 028294 155 NVEEAFIKTAAKI 167 (211)
Q Consensus 155 ~i~~~~~~i~~~~ 167 (211)
|+.+.++||.+.+
T Consensus 163 Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 163 GVDEGLEWLIEQI 175 (175)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC
Confidence 9999999998764
No 125
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=3.8e-25 Score=163.20 Aligned_cols=157 Identities=20% Similarity=0.269 Sum_probs=121.0
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+...++|+++|.+|||||||+++|.+..+.. +.++.+.+. ..+.++ ++.+.+||+||+..+...+..++..+|++
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~i 88 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGI 88 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 3567999999999999999999999876643 233433332 223343 46788999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH------------cCCcEEEEe
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------------NGLLFLEAS 149 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~s 149 (211)
|+|+|++++.++.....++..+.... ..+.|+++++||.|++. .++.+++...... ....++++|
T Consensus 89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S 166 (184)
T smart00178 89 VYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS 166 (184)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence 99999999998888877777665432 25789999999999854 3455555543321 123489999
Q ss_pred CCCCCCHHHHHHHHHHH
Q 028294 150 ARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~~~ 166 (211)
|+++.|+++++++|.+.
T Consensus 167 a~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 167 VVRRMGYGEGFKWLSQY 183 (184)
T ss_pred cccCCChHHHHHHHHhh
Confidence 99999999999999764
No 126
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.93 E-value=9.2e-25 Score=151.15 Aligned_cols=160 Identities=21% Similarity=0.349 Sum_probs=125.9
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..++|+++|..|+||||++++|.+.. .....|+.+. .+++..++ .+++++||.+|+...+..|.+||..+|++|
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf--~Iktl~~~--~~~L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGF--QIKTLEYK--GYTLNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccce--eeEEEEec--ceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 568999999999999999999999776 2333344444 44444444 567899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHH-HhcCCCCeEEEEEecCCCCCCCCCCHHH------HHHHHHHcCCcEEEEeCCCCCCH
Q 028294 84 LVYDITRRETFNHLSSWLEDAR-QHANPNMSIMLVGNKCDLAHRRAVSKEE------GEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
+|+|.+|+..++.....+..+. .....+.|++|++||.|++.. .+.++ .+.++..+.++++.||+.+|+++
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~--l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA--LSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc--cCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 9999999988877666555443 333368999999999999632 22333 33455567889999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028294 157 EEAFIKTAAKILQN 170 (211)
Q Consensus 157 ~~~~~~i~~~~~~~ 170 (211)
.+.++|+...+.++
T Consensus 167 ~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 167 LEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988774
No 127
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=5.9e-25 Score=157.63 Aligned_cols=152 Identities=22% Similarity=0.335 Sum_probs=119.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
.|+++|++|||||||+++|.+..+...+.++.+..... +... .+.+.+||+||++.+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 37999999999999999999999888887777766543 3333 3778999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEeCCCCCCHHHHHH
Q 028294 88 ITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
++++.++.....|+..+.... ..+.|+++++||.|+.+... .+...... ....++++++|++++.|++++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 999988888777776664422 25789999999999865322 22222211 11335789999999999999999
Q ss_pred HHHH
Q 028294 162 KTAA 165 (211)
Q Consensus 162 ~i~~ 165 (211)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9865
No 128
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=1.1e-24 Score=159.85 Aligned_cols=154 Identities=25% Similarity=0.301 Sum_probs=113.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCC------CeeeEEEEEEEEE-----CCEEEEEEEEeCCCccchh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDL------TIGVEFGARMVTI-----DGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~l~l~D~~G~~~~~ 69 (211)
+|+++|++++|||||+++|++.. +...+.+ +.+.++....+.+ ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 1111111 1234444333333 6677889999999999999
Q ss_pred hchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC---cEE
Q 028294 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL---LFL 146 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 146 (211)
..+..++..+|++|+|||++++.+......|.... ..+.|+++++||+|+.+.. ..+...+++...++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 99999999999999999999876665555554322 1378999999999985422 12233445555555 389
Q ss_pred EEeCCCCCCHHHHHHHHHHHH
Q 028294 147 EASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 147 ~~s~~~~~~i~~~~~~i~~~~ 167 (211)
++||++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhC
Confidence 999999999999999998764
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.93 E-value=1.3e-24 Score=157.89 Aligned_cols=156 Identities=22% Similarity=0.192 Sum_probs=108.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh---------hchHHHhc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR---------SITRSYYR 77 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~---------~~~~~~~~ 77 (211)
.+|+++|.+|+|||||+++|.+..+.....+..+....... +....+.+.+|||||..... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGH--FDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEE--EccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 47999999999999999999988764332222222232222 23335678999999974211 11111223
Q ss_pred cccEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028294 78 GAAGALLVYDITRRETF--NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
..|++|+|+|++++.++ .....|+..+.... .+.|+++++||+|+....... +...+....+.+++++||+++.|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence 46899999999987543 55556777765543 379999999999996543322 24455555677899999999999
Q ss_pred HHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKI 167 (211)
Q Consensus 156 i~~~~~~i~~~~ 167 (211)
++++++++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=2e-24 Score=157.17 Aligned_cols=157 Identities=18% Similarity=0.150 Sum_probs=110.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----hhhchHHH---hcccc
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSITRSY---YRGAA 80 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----~~~~~~~~---~~~~d 80 (211)
+|+++|.+|||||||+|+|.+........+..+.......+.+++. ..+.+|||||... .......+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999976543222222122222222333332 4688999999632 11233333 34699
Q ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCcEEEEeCCCCCCH
Q 028294 81 GALLVYDITRR-ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNV 156 (211)
Q Consensus 81 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i 156 (211)
++++|+|++++ .++..+..|.+.+..... .+.|+++|+||+|+...... .+....+... .+.+++++|++++.|+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 159 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence 99999999998 788888888888866542 47899999999998654433 3344445544 3678999999999999
Q ss_pred HHHHHHHHHH
Q 028294 157 EEAFIKTAAK 166 (211)
Q Consensus 157 ~~~~~~i~~~ 166 (211)
+++|++|.+.
T Consensus 160 ~~l~~~i~~~ 169 (170)
T cd01898 160 DELLRKLAEL 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 131
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=1e-23 Score=150.78 Aligned_cols=158 Identities=33% Similarity=0.493 Sum_probs=126.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|++|+|||||+++|....+...+.++.+.+.....+..++..+.+.+||+||+..+...+..++..+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999887777777778887777677887778899999999999999899999999999999
Q ss_pred EECCCH-HHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 86 YDITRR-ETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 86 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+|+... .++.... .|...+......+.|+++++||.|+.... ........+......+++++||+++.|+.+++++|
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l 159 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV 159 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence 999876 5565554 56665555544488999999999996543 23333333444455679999999999999999876
Q ss_pred H
Q 028294 164 A 164 (211)
Q Consensus 164 ~ 164 (211)
.
T Consensus 160 ~ 160 (161)
T TIGR00231 160 E 160 (161)
T ss_pred h
Confidence 3
No 132
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=2.1e-24 Score=161.80 Aligned_cols=156 Identities=19% Similarity=0.169 Sum_probs=113.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc---------hhhchHH
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---------FRSITRS 74 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------~~~~~~~ 74 (211)
++.++|+|+|++|||||||++++++..+.....+..+.+.....+.+++. ..+.+|||||... +... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence 45689999999999999999999988754433333334444444444443 2688999999732 1111 12
Q ss_pred HhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCC
Q 028294 75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ 154 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 154 (211)
.+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+.... .......+.+++++||+++.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~ 191 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE 191 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence 3568999999999999888877777777766655457899999999998653321 13344456789999999999
Q ss_pred CHHHHHHHHHHH
Q 028294 155 NVEEAFIKTAAK 166 (211)
Q Consensus 155 ~i~~~~~~i~~~ 166 (211)
|+++++++|.+.
T Consensus 192 gi~~l~~~L~~~ 203 (204)
T cd01878 192 GLDELLEAIEEL 203 (204)
T ss_pred CHHHHHHHHHhh
Confidence 999999998765
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=9.1e-24 Score=168.13 Aligned_cols=163 Identities=15% Similarity=0.082 Sum_probs=120.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-------hhhchHHHhcc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-------FRSITRSYYRG 78 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~ 78 (211)
...|+|+|.++||||||+++|+.........+.++.......+.+.+ ...+.+||+||... ........+..
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 45799999999999999999997664433334434454444455532 23578999999642 11122334567
Q ss_pred ccEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028294 79 AAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
++++|+|+|+++.++++.+..|..++..+.. .++|+++|+||+|+.+......++...++...+.+++++||+++.|+
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI 316 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL 316 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence 8999999999987788888899888877643 47899999999999754433333445555556788999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028294 157 EEAFIKTAAKILQ 169 (211)
Q Consensus 157 ~~~~~~i~~~~~~ 169 (211)
++++++|.+.+.+
T Consensus 317 ~eL~~~L~~~l~~ 329 (335)
T PRK12299 317 DELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888754
No 134
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=8.7e-24 Score=152.70 Aligned_cols=152 Identities=20% Similarity=0.170 Sum_probs=104.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+.|+++|++|||||||+++|.+.. +.....+..+.+.....+.+.. ...+.+|||||++.+......++..+|+++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 368999999999999999999643 2222223334444444444442 357899999999988777777888999999
Q ss_pred EEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHH---cCCcEEEEeCCCCCC
Q 028294 84 LVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKE---NGLLFLEASARTAQN 155 (211)
Q Consensus 84 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~s~~~~~~ 155 (211)
+|+|+++ +.+...+ ..+.... ..|+++++||+|+.+... ...++..+.... .+.+++++|++++.|
T Consensus 80 ~V~d~~~~~~~~~~~~~----~~~~~~~--~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (164)
T cd04171 80 LVVAADEGIMPQTREHL----EILELLG--IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred EEEECCCCccHhHHHHH----HHHHHhC--CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence 9999987 3333222 2222221 349999999999965321 112333344443 467899999999999
Q ss_pred HHHHHHHHHH
Q 028294 156 VEEAFIKTAA 165 (211)
Q Consensus 156 i~~~~~~i~~ 165 (211)
++++++.+.+
T Consensus 154 v~~l~~~l~~ 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.92 E-value=3.6e-23 Score=151.05 Aligned_cols=154 Identities=22% Similarity=0.342 Sum_probs=114.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|++|||||||++++.+..+.. ..++.+.+. ..+.+++ ..+.+||+||+..+...+..+++.+|++++
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~~--~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFNI--KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999876543 344445433 2344454 568899999999888888899999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-----CcEEEEeCCCCCCHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-----LLFLEASARTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~ 158 (211)
|+|+.+..++.....++..+... ...+.|+++++||+|+.+.. ..++......... .+++++||++|.|+++
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQE 165 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHH
Confidence 99999988888777776655432 22479999999999985432 2222222211111 2478999999999999
Q ss_pred HHHHHHH
Q 028294 159 AFIKTAA 165 (211)
Q Consensus 159 ~~~~i~~ 165 (211)
+|++|.+
T Consensus 166 ~~~~l~~ 172 (173)
T cd04155 166 GMNWVCK 172 (173)
T ss_pred HHHHHhc
Confidence 9999864
No 136
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=6.5e-23 Score=155.23 Aligned_cols=170 Identities=39% Similarity=0.548 Sum_probs=138.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|++|||||||+++|..+.+...+.++.+..+...........+.+.+|||+|++++..++..++..++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999999999999999888888777776666688899999999999999999999999999999
Q ss_pred EECCC-HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC------------CCCHHHHHHHHHHc---CCcEEEEe
Q 028294 86 YDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKEN---GLLFLEAS 149 (211)
Q Consensus 86 ~d~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~---~~~~~~~s 149 (211)
+|..+ ...++....|+..+........|+++++||+|+.... .............. ...++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 5556667788888877765579999999999997653 22222222222222 23389999
Q ss_pred CC--CCCCHHHHHHHHHHHHHHHHhhcc
Q 028294 150 AR--TAQNVEEAFIKTAAKILQNIQEGA 175 (211)
Q Consensus 150 ~~--~~~~i~~~~~~i~~~~~~~~~~~~ 175 (211)
++ .+.++.++|..+.+.+.+......
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIEKLV 192 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence 99 999999999999999876655433
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.91 E-value=1.1e-23 Score=149.00 Aligned_cols=134 Identities=21% Similarity=0.208 Sum_probs=98.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc-----chhhchHHHhccccEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-----SFRSITRSYYRGAAGA 82 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~-----~~~~~~~~~~~~~d~~ 82 (211)
||+++|++|+|||||+++|.+..+. +.++.+.+ +.. .+|||||.. .+..+. ..++.+|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~~-----~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YND-----GAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------EcC-----eeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 7999999999999999999977652 22232222 221 589999972 233333 357899999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFI 161 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~ 161 (211)
|+|||++++.++.. ..|...+ ..|+++++||+|+.+. ....++..+++...+. +++++||+++.|++++|+
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence 99999999887654 2343221 3499999999998653 3455666777777776 799999999999999998
Q ss_pred HHH
Q 028294 162 KTA 164 (211)
Q Consensus 162 ~i~ 164 (211)
+|.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 138
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.5e-23 Score=147.58 Aligned_cols=159 Identities=19% Similarity=0.298 Sum_probs=129.3
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
....+|+++|-.++||||++.+|..+..... .|+.|.......+ . ++++.+||.+|++.++.+|..|+++.+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y--k--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY--K--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE--c--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 3578999999999999999999988777666 6777776665444 3 778999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-----CCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-----GLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~ 157 (211)
||+|.+|++.+...+..+..+..... .+.|+++++||.|++.. ++..++.+..... ...+..++|.+|+|+.
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~ 167 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY 167 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence 99999999988887776666655443 68999999999999763 4445554443332 3448899999999999
Q ss_pred HHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQ 169 (211)
Q Consensus 158 ~~~~~i~~~~~~ 169 (211)
+.++++.+.+..
T Consensus 168 egl~wl~~~~~~ 179 (181)
T KOG0070|consen 168 EGLDWLSNNLKK 179 (181)
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 139
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=1.1e-22 Score=144.05 Aligned_cols=153 Identities=49% Similarity=0.828 Sum_probs=121.4
Q ss_pred EEcCCCCCHHHHHHHHHhCCC-CCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECC
Q 028294 11 IIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 11 vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 89 (211)
|+|++|+|||||++++.+... .....++. .+..............+.+||+||...+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998877 44444443 6666666777777889999999999988888888999999999999999
Q ss_pred CHHHHHHHHHHH-HHHHHhcCCCCeEEEEEecCCCCCCCCCCHHH-HHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 90 RRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDLAHRRAVSKEE-GEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 90 ~~~~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
++.++.....|+ .........+.|+++++||+|+.......... ..........+++++|+.++.++++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999888888773 33333444689999999999986544333222 3344555678899999999999999999875
No 140
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=5.8e-23 Score=147.58 Aligned_cols=147 Identities=20% Similarity=0.220 Sum_probs=109.7
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh------chHHHhc--cccEE
Q 028294 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS------ITRSYYR--GAAGA 82 (211)
Q Consensus 11 vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~------~~~~~~~--~~d~~ 82 (211)
|+|.+|+|||||++++.+..+.....+..+.+.....+.+++ ..+.+|||||+..+.. +...++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998865554445555665555566665 4688999999876554 3455564 89999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|+|+|+.+++... .|+..+.. .+.|+++++||+|+.+..... .....+....+.+++++|+.++.|++++++.
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIK-IDLDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccch-hhHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 9999998864422 33333332 378999999999997654333 2345666667889999999999999999998
Q ss_pred HHHH
Q 028294 163 TAAK 166 (211)
Q Consensus 163 i~~~ 166 (211)
+.+.
T Consensus 152 l~~~ 155 (158)
T cd01879 152 IAEL 155 (158)
T ss_pred HHHH
Confidence 8775
No 141
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=6.4e-23 Score=148.84 Aligned_cols=156 Identities=17% Similarity=0.164 Sum_probs=109.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.|+++|++|+|||||+++|....+.....+..+.+.....+..+ +....+.+|||||++.+...+...+..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 58999999999999999999888766544444444443334333 13567899999999998888888899999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCH-HHHHHHHH------HcCCcEEEEeCCCCCCHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK-EEGEQFAK------ENGLLFLEASARTAQNVEEA 159 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~~~~------~~~~~~~~~s~~~~~~i~~~ 159 (211)
|+++....... ..+..+.. .+.|+++++||+|+........ +....+.. ....+++++|++++.|++++
T Consensus 82 d~~~~~~~~~~-~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 99884321111 11222222 3789999999999864321111 11111111 12357999999999999999
Q ss_pred HHHHHHHH
Q 028294 160 FIKTAAKI 167 (211)
Q Consensus 160 ~~~i~~~~ 167 (211)
+++|.+..
T Consensus 158 ~~~l~~~~ 165 (168)
T cd01887 158 LEAILLLA 165 (168)
T ss_pred HHHHHHhh
Confidence 99998765
No 142
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=3.5e-23 Score=153.97 Aligned_cols=149 Identities=20% Similarity=0.195 Sum_probs=106.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh--CCCCCCC------------CCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhch
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD--KRFQPVH------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSIT 72 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 72 (211)
-+|+++|.+++|||||+++|+. +.+.... ..+.+.++......++.....+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999997 4443332 1234555555555666667789999999999999999
Q ss_pred HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC-CCHHHHHHHHH-------HcCCc
Q 028294 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAK-------ENGLL 144 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~ 144 (211)
..+++.+|++++|||+.+.. +.....++..+.. .+.|+++++||+|+..... ...++...+.. ..+++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP 158 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence 99999999999999998742 2222333333322 3789999999999964321 11233444432 23678
Q ss_pred EEEEeCCCCCCHHHH
Q 028294 145 FLEASARTAQNVEEA 159 (211)
Q Consensus 145 ~~~~s~~~~~~i~~~ 159 (211)
++++||++|.|+.+.
T Consensus 159 iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 159 VLYASAKNGWASLNL 173 (194)
T ss_pred EEEeehhcccccccc
Confidence 999999999887443
No 143
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=2.2e-22 Score=160.14 Aligned_cols=160 Identities=17% Similarity=0.143 Sum_probs=116.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh----hchHHH---hcc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR----SITRSY---YRG 78 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----~~~~~~---~~~ 78 (211)
...|+|+|.++||||||+++|..........+.++.......+.+++ ...+.+||+||..... .+...+ +..
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 46799999999999999999998764333333334444444455543 3567899999974321 233333 456
Q ss_pred ccEEEEEEECCCH---HHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Q 028294 79 AAGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA 153 (211)
Q Consensus 79 ~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 153 (211)
+|++++|+|+++. .+++.+..|.+++..+.. .+.|++||+||+|+.+... ..+..+.+....+.+++++||+++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 9999999999976 677788888877766532 4789999999999965432 223444555566788999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028294 154 QNVEEAFIKTAAKI 167 (211)
Q Consensus 154 ~~i~~~~~~i~~~~ 167 (211)
.|+++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999988754
No 144
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=3.6e-23 Score=146.60 Aligned_cols=148 Identities=21% Similarity=0.254 Sum_probs=103.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc------hhhchHHHh--cc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES------FRSITRSYY--RG 78 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~------~~~~~~~~~--~~ 78 (211)
++|+++|.|++|||||+|+|++........|.++.+.....+.+.+ ..+.++|+||.-. .......++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 6899999999999999999999986555555556666666667766 4578999999322 122334444 68
Q ss_pred ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028294 79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 158 (211)
.|++|+|+|+++.+.-.+ +...+.. .+.|+++++||+|......+. ...+.+.+..+++++++||+++.|+++
T Consensus 79 ~D~ii~VvDa~~l~r~l~---l~~ql~e---~g~P~vvvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNLY---LTLQLLE---LGIPVVVVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SSEEEEEEEGGGHHHHHH---HHHHHHH---TTSSEEEEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CCEEEEECCCCCHHHHHH---HHHHHHH---cCCCEEEEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 999999999987543222 2223333 389999999999986543332 235666677899999999999999999
Q ss_pred HHHHH
Q 028294 159 AFIKT 163 (211)
Q Consensus 159 ~~~~i 163 (211)
+++.|
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98765
No 145
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=1.9e-22 Score=161.76 Aligned_cols=154 Identities=21% Similarity=0.185 Sum_probs=111.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc---------chhhchHHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE---------SFRSITRSY 75 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~---------~~~~~~~~~ 75 (211)
..++|+++|.+|+|||||+|+|++........+..+.+.....+.+++ ...+.+|||||.. .+.. ....
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~-tle~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRA-TLEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHH-HHHH
Confidence 458999999999999999999998875443333334555555566643 2368899999972 2222 2234
Q ss_pred hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028294 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
+..+|++++|+|++++.+...+..|...+......+.|+++|+||+|+.+.. ..... .....+++++||+++.|
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~-----~v~~~-~~~~~~~i~iSAktg~G 339 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEP-----RIERL-EEGYPEAVFVSAKTGEG 339 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChH-----hHHHH-HhCCCCEEEEEccCCCC
Confidence 7899999999999998887777766666665544578999999999986422 11111 11234689999999999
Q ss_pred HHHHHHHHHHH
Q 028294 156 VEEAFIKTAAK 166 (211)
Q Consensus 156 i~~~~~~i~~~ 166 (211)
++++++.|.+.
T Consensus 340 I~eL~~~I~~~ 350 (351)
T TIGR03156 340 LDLLLEAIAER 350 (351)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 146
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.90 E-value=3e-22 Score=137.21 Aligned_cols=173 Identities=24% Similarity=0.327 Sum_probs=142.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch-hhchHHHhccccE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ--PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-RSITRSYYRGAAG 81 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-~~~~~~~~~~~d~ 81 (211)
...||+|+|..++|||+++..|+.+... .+..++....+.....+-++..-.+.|+||+|.... ..+...|+..+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 4579999999999999999999865543 344556554454444444666678999999997666 6788999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
+++|||..|+++|+.+..+...|.+..+ ..+|++|++||+|+.++.+...+-+..|+....+.++++++.+...+.+.|
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf 167 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF 167 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence 9999999999999998887777766554 679999999999999888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccc
Q 028294 161 IKTAAKILQNIQEGALD 177 (211)
Q Consensus 161 ~~i~~~~~~~~~~~~~~ 177 (211)
..+...+...+.+....
T Consensus 168 ~~l~~rl~~pqskS~Fp 184 (198)
T KOG3883|consen 168 TYLASRLHQPQSKSTFP 184 (198)
T ss_pred HHHHHhccCCcccccCc
Confidence 99988886655544433
No 147
>PRK04213 GTP-binding protein; Provisional
Probab=99.90 E-value=3.2e-23 Score=155.03 Aligned_cols=151 Identities=21% Similarity=0.225 Sum_probs=102.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC-----------ccchhhchH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG-----------QESFRSITR 73 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G-----------~~~~~~~~~ 73 (211)
..++|+++|.+|+|||||+|+|.+..+.....+ +.+.....+.+. .+.+||||| ++.+...+.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRP--GVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC--ceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 468999999999999999999998876544444 444444444333 478999999 455555555
Q ss_pred HHhc----cccEEEEEEECCCHHHH----H------HHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH
Q 028294 74 SYYR----GAAGALLVYDITRRETF----N------HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK 139 (211)
Q Consensus 74 ~~~~----~~d~~i~v~d~~~~~~~----~------~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 139 (211)
.++. .++++++|+|..+.... . ....++..+. ..+.|+++|+||+|+.+.. .+...++..
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~~ 155 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIAE 155 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHHH
Confidence 5543 45788888888653211 0 0011122222 2379999999999986433 234445555
Q ss_pred HcCC---------cEEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 140 ENGL---------LFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 140 ~~~~---------~~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
..+. +++++||++| |+++++++|.+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 156 RLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 5554 5899999999 99999999988764
No 148
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.89 E-value=3.2e-22 Score=155.98 Aligned_cols=153 Identities=19% Similarity=0.138 Sum_probs=103.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh--------hchHHHhccc
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--------SITRSYYRGA 79 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~--------~~~~~~~~~~ 79 (211)
+|+++|.+|||||||+|+|++.........+.++......+...+ ..++.+|||||..... .....++..+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 689999999999999999999876543332212222222232222 2468899999964321 1234567899
Q ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHH
Q 028294 80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEE 158 (211)
Q Consensus 80 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~ 158 (211)
|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.+... ..+....+....+. +++++||++|.|+++
T Consensus 81 Dvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~ 154 (270)
T TIGR00436 81 DLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTSF 154 (270)
T ss_pred CEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHHH
Confidence 9999999999865543 333333333 3789999999999864222 12333444444444 799999999999999
Q ss_pred HHHHHHHHH
Q 028294 159 AFIKTAAKI 167 (211)
Q Consensus 159 ~~~~i~~~~ 167 (211)
+++.|.+.+
T Consensus 155 L~~~l~~~l 163 (270)
T TIGR00436 155 LAAFIEVHL 163 (270)
T ss_pred HHHHHHHhC
Confidence 999888766
No 149
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=2.4e-22 Score=137.88 Aligned_cols=114 Identities=36% Similarity=0.669 Sum_probs=89.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCC--CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQ--PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
||+|+|+.|||||||+++|++.... .......+.++.............+.+||++|++.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998876 22233335555555667777777799999999999988888889999999999
Q ss_pred EECCCHHHHHHHHHH---HHHHHHhcCCCCeEEEEEecCC
Q 028294 86 YDITRRETFNHLSSW---LEDARQHANPNMSIMLVGNKCD 122 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D 122 (211)
||++++.++.++..+ +..+.... .+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence 999999999887555 44444433 4699999999998
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.89 E-value=3.5e-22 Score=145.96 Aligned_cols=155 Identities=21% Similarity=0.212 Sum_probs=105.6
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch----hhc---hHHHhccccEEE
Q 028294 11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----RSI---TRSYYRGAAGAL 83 (211)
Q Consensus 11 vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~----~~~---~~~~~~~~d~~i 83 (211)
++|++|||||||+|+|.+........+..+.+.....+.+++ ...+.+|||||.... ..+ ....+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998865222222223333333333441 355789999996321 122 234567899999
Q ss_pred EEEECCCH------HHHHHHHHHHHHHHHhcC-------CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeC
Q 028294 84 LVYDITRR------ETFNHLSSWLEDARQHAN-------PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA 150 (211)
Q Consensus 84 ~v~d~~~~------~~~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~ 150 (211)
+|+|+.++ .++.....|...+..... .+.|+++++||+|+..................+..++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 159 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA 159 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence 99999987 467777777776654432 37999999999999654433222222333345667999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028294 151 RTAQNVEEAFIKTAAK 166 (211)
Q Consensus 151 ~~~~~i~~~~~~i~~~ 166 (211)
+++.|++++++++.+.
T Consensus 160 ~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 160 KTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhcCHHHHHHHHHhh
Confidence 9999999999988754
No 151
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.89 E-value=7e-22 Score=141.55 Aligned_cols=146 Identities=23% Similarity=0.215 Sum_probs=105.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh--------chHHHhc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYR 77 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~~~~~~~ 77 (211)
++|+++|++|+|||||++++++..... ...+..+..........+ ...+.+|||||...+.. .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 589999999999999999999876432 222232333333334444 34678999999755432 2334667
Q ss_pred cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028294 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 157 (211)
.+|++++|+|+.++.+......+.. ..+.|+++++||+|+.+.... .......+++++|++++.|++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 8999999999998776655544332 347999999999999754432 233456789999999999999
Q ss_pred HHHHHHHHHH
Q 028294 158 EAFIKTAAKI 167 (211)
Q Consensus 158 ~~~~~i~~~~ 167 (211)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987654
No 152
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=6.9e-22 Score=158.29 Aligned_cols=156 Identities=22% Similarity=0.287 Sum_probs=106.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCccc-hhhch-------HH
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSIT-------RS 74 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~-------~~ 74 (211)
.+.++|+++|.+|||||||+|+|++..+..... +.++.......+..++ .++.||||||... +..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 456799999999999999999999887753222 1112233333345554 4578999999743 22221 23
Q ss_pred HhccccEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEeCC
Q 028294 75 YYRGAAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASAR 151 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~s~~ 151 (211)
.+..+|++++|+|..+. +.... .|+..+... +.|.++|+||+|+.+. ...+..+.+...+ ..++++||+
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 46799999999998663 33333 344444332 5677889999998642 2345555555443 579999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 028294 152 TAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 152 ~~~~i~~~~~~i~~~~~~ 169 (211)
+|.|+++++++|.+.+..
T Consensus 200 tg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKI 217 (339)
T ss_pred CccCHHHHHHHHHHhCCC
Confidence 999999999998876543
No 153
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=8.3e-22 Score=164.54 Aligned_cols=154 Identities=21% Similarity=0.196 Sum_probs=106.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc--------hhhchHHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSY 75 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~ 75 (211)
..++|+|+|.+|||||||+|+|++..... ...+.++.+.....+..++. .+.+|||||.+. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 34789999999999999999999876532 22333333333334445544 478999999762 33345667
Q ss_pred hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCC
Q 028294 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQ 154 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 154 (211)
+..+|++|+|+|+++..++.. ..+...+.. .+.|+++|+||+|+.... .+....+ ..++ .++++||++|.
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR 185 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence 889999999999998755432 233333332 379999999999985421 1222222 2333 35799999999
Q ss_pred CHHHHHHHHHHHHHH
Q 028294 155 NVEEAFIKTAAKILQ 169 (211)
Q Consensus 155 ~i~~~~~~i~~~~~~ 169 (211)
|++++|++|.+.+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999988754
No 154
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=1.6e-21 Score=143.94 Aligned_cols=156 Identities=22% Similarity=0.187 Sum_probs=109.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe--------------eeEEEEEEEEECCEEEEEEEEeCCCccchhhchH
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI--------------GVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR 73 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~ 73 (211)
+|+|+|.+|+|||||+++|++........... +.+.......++.....+.+||+||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999887655432211 1222222222333356789999999998888888
Q ss_pred HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHH-----------
Q 028294 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKE----------- 140 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~----------- 140 (211)
.++..+|++++|+|+.++..... ..++..+.. .+.|+++++||+|+..+... ..+...+....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGT 156 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhc
Confidence 99999999999999987654332 233333332 48999999999999652221 12223333322
Q ss_pred ---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 141 ---NGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 141 ---~~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
...+++++|++++.|+++++++|.+.+
T Consensus 157 ~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 157 RNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred ccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 246799999999999999999988775
No 155
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.88 E-value=3.4e-21 Score=158.76 Aligned_cols=154 Identities=21% Similarity=0.176 Sum_probs=114.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc--------hHHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI--------TRSY 75 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~ 75 (211)
..++|+++|++|+|||||+|+|++.... ....+.++.+.....+.+++.. +.+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4689999999999999999999987532 2233444566666666777654 689999998654432 2457
Q ss_pred hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028294 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
++.+|++|+|||++++.++... |+..+.. .+.|+++|+||+|+... ....++...+.+++.+|+++ .|
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g 347 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK 347 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence 7899999999999988776654 5555432 37899999999999543 12334555677899999998 59
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028294 156 VEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 156 i~~~~~~i~~~~~~~~~ 172 (211)
++++|+.+.+.+.+...
T Consensus 348 I~~~~~~L~~~i~~~~~ 364 (442)
T TIGR00450 348 IKALVDLLTQKINAFYS 364 (442)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999998877653
No 156
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=1.5e-21 Score=140.50 Aligned_cols=143 Identities=17% Similarity=0.166 Sum_probs=100.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc----chhhchHHHhccccEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----SFRSITRSYYRGAAGAL 83 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~----~~~~~~~~~~~~~d~~i 83 (211)
+|+++|.+++|||||+|+|.+... ....+.+ +.+... .+|||||.. ++.......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cCccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 799999999999999999886532 1112212 222222 269999962 22222234478999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC--cEEEEeCCCCCCHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL--LFLEASARTAQNVEEAFI 161 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|+++..++. ..|+..+ ..+.|+++++||+|+.+ ...+...+++.+.+. +++++|++++.|++++|+
T Consensus 70 ~v~d~~~~~s~~--~~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~ 140 (158)
T PRK15467 70 YVHGANDPESRL--PAGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD 140 (158)
T ss_pred EEEeCCCccccc--CHHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence 999999876542 2343332 13679999999999854 234556677777664 899999999999999999
Q ss_pred HHHHHHHHHHh
Q 028294 162 KTAAKILQNIQ 172 (211)
Q Consensus 162 ~i~~~~~~~~~ 172 (211)
.+.+.+.+.+.
T Consensus 141 ~l~~~~~~~~~ 151 (158)
T PRK15467 141 YLASLTKQEEA 151 (158)
T ss_pred HHHHhchhhhc
Confidence 99888766554
No 157
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=3e-21 Score=164.22 Aligned_cols=156 Identities=23% Similarity=0.274 Sum_probs=115.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCC------CeeeEEEEEEEEE-----CCEEEEEEEEeCCCccc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDL------TIGVEFGARMVTI-----DGRPIKLQIWDTAGQES 67 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~l~l~D~~G~~~ 67 (211)
.-+|+++|+.++|||||+++|+... +...+.. ..|.++....+.+ ++..+.+.||||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 3589999999999999999998652 1122211 2255555444333 45668899999999999
Q ss_pred hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC---c
Q 028294 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL---L 144 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 144 (211)
+...+..++..+|++|+|+|+++..+.+....|+..+. .+.|+++++||+|+.+.. ..+...++....+. .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99999999999999999999998766666655544332 378999999999986422 12223344444555 3
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Q 028294 145 FLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 145 ~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
++++||++|.|++++|+.|.+.+
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhC
Confidence 89999999999999999888765
No 158
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=1.2e-21 Score=140.36 Aligned_cols=146 Identities=19% Similarity=0.107 Sum_probs=99.3
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh--------chHHHhcccc
Q 028294 10 IIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYRGAA 80 (211)
Q Consensus 10 ~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~~~~~~~~~d 80 (211)
+++|.+|+|||||+++|++..... ...+..+.+........++ ..+.+|||||...+.. .....+..+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 479999999999999999775321 1222223333333334444 5688999999876443 3445678899
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHH
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEA 159 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~ 159 (211)
++++|+|..++.+.... .+...+.. .+.|+++++||+|+.+.... .......+. .++++|++++.|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 99999999875443332 22222222 36999999999999653221 222334555 6899999999999999
Q ss_pred HHHHHHH
Q 028294 160 FIKTAAK 166 (211)
Q Consensus 160 ~~~i~~~ 166 (211)
+++|.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9998865
No 159
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=1.7e-21 Score=144.76 Aligned_cols=157 Identities=17% Similarity=0.147 Sum_probs=100.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC----CCCCC---CCCCeeeEEEEEEEEEC------------CEEEEEEEEeCCCccc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK----RFQPV---HDLTIGVEFGARMVTID------------GRPIKLQIWDTAGQES 67 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~----~~~~~---~~~~~~~~~~~~~~~~~------------~~~~~l~l~D~~G~~~ 67 (211)
++|+++|++++|||||+++|+.. .+... ..+..+.........+. +....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999963 11111 11111222222222222 3367889999999876
Q ss_pred hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHH------
Q 028294 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAK------ 139 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~------ 139 (211)
+..........+|++++|+|+.+.........+. +... .+.|+++++||+|+...... ..++..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5554445567789999999998754333222221 1122 26799999999998632211 1222222111
Q ss_pred -HcCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 140 -ENGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 140 -~~~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
..+++++++|++++.|++++++.|.+.+
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 1357899999999999999999888766
No 160
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=3.9e-21 Score=157.55 Aligned_cols=158 Identities=18% Similarity=0.134 Sum_probs=112.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch--hhch------HHHhcc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF--RSIT------RSYYRG 78 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~--~~~~------~~~~~~ 78 (211)
++|+++|.+|||||||+|+|++........+..+.+.....+.+.+. ..+.+|||||..+. ..++ ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 68999999999999999999987654433333345554445555542 24679999997331 2222 234688
Q ss_pred ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCCCCHH
Q 028294 79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVE 157 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~ 157 (211)
+|++|+|+|++++.++..+..|...+......+.|+++|+||+|+..... .... ....+.+ ++.+||++|.|++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId 351 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP 351 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence 99999999999988877776665555555445799999999999854211 1111 1123445 5889999999999
Q ss_pred HHHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQN 170 (211)
Q Consensus 158 ~~~~~i~~~~~~~ 170 (211)
+++++|.+.+...
T Consensus 352 eL~e~I~~~l~~~ 364 (426)
T PRK11058 352 LLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999888543
No 161
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1.3e-20 Score=153.81 Aligned_cols=159 Identities=18% Similarity=0.169 Sum_probs=114.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----hhhchHHH---hccc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSITRSY---YRGA 79 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----~~~~~~~~---~~~~ 79 (211)
..|+++|.++||||||+++|++.+......+.++.......+.++. ...+.+||+||... ...+...+ +..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 4799999999999999999998764333333334443333344431 34688999999642 11233344 4558
Q ss_pred cEEEEEEECCCH---HHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCC
Q 028294 80 AGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ 154 (211)
Q Consensus 80 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 154 (211)
+++|+|+|+++. +.+.....|...+..+.. .++|++||+||+|+.+. .+....+....+.+++++||+++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence 999999999864 567777778777776543 47999999999998431 244555666666789999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 028294 155 NVEEAFIKTAAKILQN 170 (211)
Q Consensus 155 ~i~~~~~~i~~~~~~~ 170 (211)
|+++++++|.+.+.+.
T Consensus 314 GI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 314 GLDELLYAVAELLEET 329 (424)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999998877654
No 162
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.87 E-value=9.3e-22 Score=133.91 Aligned_cols=154 Identities=19% Similarity=0.317 Sum_probs=123.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+.+.++|-.++|||||+|.+..+.+.+...|++|.... .+....+.+.+||.||+.++++.|..|++.+++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 578899999999999999999998888888888887764 4555678899999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHH-HhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc--------CCcEEEEeCCCCCCH
Q 028294 86 YDITRRETFNHLSSWLEDAR-QHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN--------GLLFLEASARTAQNV 156 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--------~~~~~~~s~~~~~~i 156 (211)
+|+.+++.+..-+..+..+. +..-.+.|++|++||.|++.. +... .+..+. .+.+|.+|+++..++
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~---~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKI---ALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc--ccHH---HHHHHhCccccccceEEEEEEEEcCCccH
Confidence 99999887766655444443 333368999999999998653 2222 222222 334899999999999
Q ss_pred HHHHHHHHHHHH
Q 028294 157 EEAFIKTAAKIL 168 (211)
Q Consensus 157 ~~~~~~i~~~~~ 168 (211)
+-+.++|++.-.
T Consensus 171 d~~~~Wli~hsk 182 (186)
T KOG0075|consen 171 DITLDWLIEHSK 182 (186)
T ss_pred HHHHHHHHHHhh
Confidence 999999987653
No 163
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=8.3e-21 Score=141.28 Aligned_cols=158 Identities=19% Similarity=0.173 Sum_probs=105.7
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc----------cchhhch
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----------ESFRSIT 72 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~----------~~~~~~~ 72 (211)
.+..++|+++|++|+|||||+++|++..+.....++.+.+........ ...+.||||||. +.+....
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 456789999999999999999999987655554555555544443332 257899999994 2333444
Q ss_pred HHHhccc---cEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHHcCCcEEE
Q 028294 73 RSYYRGA---AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKENGLLFLE 147 (211)
Q Consensus 73 ~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~ 147 (211)
..++... +++++|+|..++.+.... .+...+.. .+.|+++++||+|+....+. ..+.+.........++++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 173 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL 173 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence 5555544 578888998775433221 11122221 37899999999998643221 112233344334678999
Q ss_pred EeCCCCCCHHHHHHHHHHHH
Q 028294 148 ASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 148 ~s~~~~~~i~~~~~~i~~~~ 167 (211)
+|++++.|++++++.|.+.+
T Consensus 174 ~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 174 FSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 99999999999999887765
No 164
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.87 E-value=4.6e-21 Score=158.74 Aligned_cols=149 Identities=24% Similarity=0.225 Sum_probs=110.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc--------hHHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI--------TRSY 75 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~ 75 (211)
..++|+++|.+|+|||||+|+|++.... ....+..+.++....+.+++. .+.+|||||...+... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3479999999999999999999987642 223333355555555666654 5789999998654332 2346
Q ss_pred hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028294 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
+..+|++++|+|++++.++.....|.. ..+.|+++|+||+|+....... ...+.+++++|+++|.|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G 357 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG 357 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence 789999999999999877665444432 3478999999999996532211 23456799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKILQ 169 (211)
Q Consensus 156 i~~~~~~i~~~~~~ 169 (211)
+++++++|.+.+..
T Consensus 358 I~~L~~~L~~~l~~ 371 (449)
T PRK05291 358 IDELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 165
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=5.4e-21 Score=159.67 Aligned_cols=158 Identities=18% Similarity=0.181 Sum_probs=109.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc----------chhhch-
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----------SFRSIT- 72 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~~~- 72 (211)
..++|+++|.+++|||||+|+|++.... ....+.++.+.....+.+++.. +.+|||||.. .+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 4689999999999999999999988653 2333343444444556666655 5699999952 222222
Q ss_pred HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHHHHH-HHHHcCCcEEEEe
Q 028294 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQ-FAKENGLLFLEAS 149 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~-~~~~~~~~~~~~s 149 (211)
..++..+|++|+|+|++++.++..+. ++..+.. .+.|+++|+||+|+.+.... ..++... +.....++++++|
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S 363 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS 363 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence 34578999999999999987776653 3333332 47899999999999642211 0111211 1212346899999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 028294 150 ARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~~~~~ 168 (211)
|++|.|++++|+.+.+.+.
T Consensus 364 Ak~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 364 AKTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987764
No 166
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=2e-20 Score=158.52 Aligned_cols=153 Identities=20% Similarity=0.195 Sum_probs=110.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|+.++|||||+++|.+..+.....+..+.+.....+.+++. ..+.||||||++.|..++...+..+|++|+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 5689999999999999999999988776655544445544444555432 268899999999999999889999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CcEEEEeCCCCCC
Q 028294 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG---------LLFLEASARTAQN 155 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~ 155 (211)
|+|+++....+.... +......+.|+++++||+|+... ..+.........+ .+++++||++|.|
T Consensus 165 VVda~dgv~~qT~e~----i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeG 237 (587)
T TIGR00487 165 VVAADDGVMPQTIEA----ISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDG 237 (587)
T ss_pred EEECCCCCCHhHHHH----HHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCC
Confidence 999987432111111 12222247999999999998642 2233333332222 4699999999999
Q ss_pred HHHHHHHHHH
Q 028294 156 VEEAFIKTAA 165 (211)
Q Consensus 156 i~~~~~~i~~ 165 (211)
+++++++|..
T Consensus 238 I~eLl~~I~~ 247 (587)
T TIGR00487 238 IDELLDMILL 247 (587)
T ss_pred hHHHHHhhhh
Confidence 9999998863
No 167
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.3e-20 Score=127.39 Aligned_cols=156 Identities=19% Similarity=0.330 Sum_probs=122.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
+.++|+.+|-.++||||++..|+-... ....+++|..+... ..+++.+++||.+|++..+.+|..|+....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetV----tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETV----TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEE----EeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 467999999999999999999986653 44556666665443 3357789999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-----CCcEEEEeCCCCCCHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-----GLLFLEASARTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~ 158 (211)
|+|..+.+..+..+..+..+.... ....|++|.+||.|+++. +..+++..+.... ...+.++++.+++++.+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A--~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDA--MKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccc--cCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 999999877666655444432222 258999999999999763 4566766655543 33488999999999999
Q ss_pred HHHHHHHHH
Q 028294 159 AFIKTAAKI 167 (211)
Q Consensus 159 ~~~~i~~~~ 167 (211)
-|.+|.+.+
T Consensus 169 glswlsnn~ 177 (180)
T KOG0071|consen 169 GLSWLSNNL 177 (180)
T ss_pred HHHHHHhhc
Confidence 999988764
No 168
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.87 E-value=6.6e-21 Score=140.01 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=99.3
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc----------chhh
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE----------SFRS 70 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~----------~~~~ 70 (211)
|+....++|+|+|++|+|||||+|+|++..+.....++.+.+.....+..++ .+.+|||||.. .+..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 3456789999999999999999999998764333334445554444344442 57899999953 2333
Q ss_pred chHHHhc---cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHHcC--C
Q 028294 71 ITRSYYR---GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKENG--L 143 (211)
Q Consensus 71 ~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~ 143 (211)
....+++ .+|++++|+|++++.+.... .++..+.. .+.|+++++||+|+...... ..++++......+ .
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 3444554 35799999999875444433 22233322 37899999999998643211 2334444554443 4
Q ss_pred cEEEEeCCCCCCHH
Q 028294 144 LFLEASARTAQNVE 157 (211)
Q Consensus 144 ~~~~~s~~~~~~i~ 157 (211)
+++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 79999999999873
No 169
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.87 E-value=4.8e-21 Score=143.40 Aligned_cols=159 Identities=20% Similarity=0.180 Sum_probs=100.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEEC-----------------------------C----
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTID-----------------------------G---- 52 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------------------~---- 52 (211)
++|+++|+.|+|||||+..+.+..... ......+.++......+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997542111 000111111111111110 1
Q ss_pred EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--C
Q 028294 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--S 130 (211)
Q Consensus 53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~ 130 (211)
....+.||||||++.+.......+..+|++++|+|+.++.........+..+.... ..|+++++||+|+...... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~--~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG--LKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC--CCcEEEEEEchhccCHHHHHHH
Confidence 11578999999999888888888889999999999987421111112222222221 3579999999999642211 1
Q ss_pred HHHHHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 131 KEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 131 ~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
.+....++.. .+++++++||++|.|++++++.|.+.+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 1223333332 256799999999999999999887654
No 170
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.3e-20 Score=155.58 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=112.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch----hhc---hHHHhcc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----RSI---TRSYYRG 78 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~----~~~---~~~~~~~ 78 (211)
...|+|+|.++||||||+|+|++.+......+.++.......+.+.+ ..+.+||+||.... ..+ ....+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 46799999999999999999998765443334334444444444544 46889999995321 111 2234577
Q ss_pred ccEEEEEEECCCH----HHHHHHHHHHHHHHHhc-----------CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC
Q 028294 79 AAGALLVYDITRR----ETFNHLSSWLEDARQHA-----------NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL 143 (211)
Q Consensus 79 ~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 143 (211)
+|++|+|+|+++. +.+..+..+..++..+. ..+.|++||+||+|+.+.... .+.........++
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~ 315 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGW 315 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCC
Confidence 8999999999752 34455555555554432 147899999999999653322 2233334445578
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028294 144 LFLEASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 144 ~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 171 (211)
+++++||+++.|+++++++|.+.+....
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999988876543
No 171
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=1.5e-20 Score=155.74 Aligned_cols=158 Identities=23% Similarity=0.131 Sum_probs=107.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc-----------h
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-----------T 72 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-----------~ 72 (211)
..++|+++|.+++|||||+|+|++..... ...+.++.+.....+..++. .+.+|||||....... .
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 45899999999999999999999876432 22222233333333444543 6789999996543321 2
Q ss_pred HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-H----cCCcEEE
Q 028294 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-E----NGLLFLE 147 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~----~~~~~~~ 147 (211)
..+++.+|++|+|+|+.++.+..... ++..+.. .+.|+++++||+|+.+. ....++...... . ..+++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi~ 323 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIVF 323 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceEE
Confidence 34678999999999999876655543 2233322 37899999999999621 111222222222 1 2468999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHH
Q 028294 148 ASARTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 148 ~s~~~~~~i~~~~~~i~~~~~~ 169 (211)
+||++|.|++++|+++.+.+..
T Consensus 324 ~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 324 ISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887654
No 172
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.86 E-value=2e-20 Score=136.03 Aligned_cols=155 Identities=24% Similarity=0.152 Sum_probs=102.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh-----------chH
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-----------ITR 73 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-----------~~~ 73 (211)
.++|+++|.+|+|||||+++|++...... ..+..+.......+..++. .+.+||+||...... ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHHH
Confidence 57899999999999999999998764322 2222222332333444544 467999999643311 112
Q ss_pred HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHH-HHc----CCcEEEE
Q 028294 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-KEN----GLLFLEA 148 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~~----~~~~~~~ 148 (211)
..+..+|++++|+|+.++.+..... ++..+.. .+.|+++++||+|+.+......+...+.. ... ..+++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 3567899999999999876654432 2222222 37899999999999654322222222222 222 3679999
Q ss_pred eCCCCCCHHHHHHHHHHH
Q 028294 149 SARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 149 s~~~~~~i~~~~~~i~~~ 166 (211)
|++++.|++++++.+.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999988764
No 173
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.86 E-value=1.9e-20 Score=135.13 Aligned_cols=156 Identities=20% Similarity=0.126 Sum_probs=103.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh--------chHHHhc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------ITRSYYR 77 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~~~~~~~ 77 (211)
..+|+++|++|+|||||+++|.+.................. .........+.+|||||...... .....+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIR-GIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEE-EEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 57899999999999999999998765433222212211111 12233346788999999654322 2344578
Q ss_pred cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEeCCCCCCH
Q 028294 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNV 156 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i 156 (211)
.+|++++|+|+.++.+ .....+...+... +.|+++++||+|+........+....+.... ..+++++|++++.++
T Consensus 82 ~~d~i~~v~d~~~~~~-~~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 157 (168)
T cd04163 82 DVDLVLFVVDASEPIG-EGDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV 157 (168)
T ss_pred hCCEEEEEEECCCccC-chHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence 8999999999998722 1112222333322 6899999999999643222223333444444 367999999999999
Q ss_pred HHHHHHHHHH
Q 028294 157 EEAFIKTAAK 166 (211)
Q Consensus 157 ~~~~~~i~~~ 166 (211)
+++++.|.+.
T Consensus 158 ~~l~~~l~~~ 167 (168)
T cd04163 158 DELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 174
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.86 E-value=4.7e-21 Score=131.71 Aligned_cols=163 Identities=27% Similarity=0.494 Sum_probs=140.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||.++|++..|||||+-.+.++.+.+.+..+.|..+-.+++.+.+..+.+.+||.+|++++....+.....+-+++|+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFm 99 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILFM 99 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC----CCC-CHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028294 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR----RAV-SKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~----~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
||++.+.++..+..|+...+......+| |++++|.|+--. .+. -...++.+++-.+++++++|+....|+.++|
T Consensus 100 FDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 100 FDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF 178 (205)
T ss_pred EecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence 9999999999999999998877765555 567999997211 111 1234566777789999999999999999999
Q ss_pred HHHHHHHHH
Q 028294 161 IKTAAKILQ 169 (211)
Q Consensus 161 ~~i~~~~~~ 169 (211)
.-+..++..
T Consensus 179 K~vlAklFn 187 (205)
T KOG1673|consen 179 KIVLAKLFN 187 (205)
T ss_pred HHHHHHHhC
Confidence 887777643
No 175
>PRK00089 era GTPase Era; Reviewed
Probab=99.85 E-value=2.9e-20 Score=146.67 Aligned_cols=159 Identities=20% Similarity=0.151 Sum_probs=105.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh--------hchHHHh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR--------SITRSYY 76 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~--------~~~~~~~ 76 (211)
+.-.|+|+|++|||||||+|+|++.........+.+.......+... ...++.+|||||..... ......+
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 34569999999999999999999887754433332222222222222 23678999999964322 2334467
Q ss_pred ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCCCCC
Q 028294 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQN 155 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~ 155 (211)
..+|++++|+|+++..+ ......+..+. ..+.|+++++||+|+.............+....+ .+++++||+++.|
T Consensus 83 ~~~D~il~vvd~~~~~~-~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g 158 (292)
T PRK00089 83 KDVDLVLFVVDADEKIG-PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN 158 (292)
T ss_pred hcCCEEEEEEeCCCCCC-hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence 89999999999988322 11122222222 2378999999999996432222334444444444 5699999999999
Q ss_pred HHHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKIL 168 (211)
Q Consensus 156 i~~~~~~i~~~~~ 168 (211)
++++++.|.+.+.
T Consensus 159 v~~L~~~L~~~l~ 171 (292)
T PRK00089 159 VDELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999888764
No 176
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=6.3e-20 Score=152.32 Aligned_cols=146 Identities=23% Similarity=0.184 Sum_probs=102.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc--------hhhchHHHhc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSYYR 77 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~~~ 77 (211)
++|+++|.+|||||||+|+|.+.... ....+..+.+.....+.+++ ..+.+|||||.+. .......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987643 22223334444444455555 6689999999876 2333556788
Q ss_pred cccEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCC
Q 028294 78 GAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQ 154 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 154 (211)
.+|++|+|+|+.++.+.. .+..|+. . .+.|+++++||+|+.... +....+ ...++ .++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~---~---~~~piilv~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILR---K---SNKPVILVVNKVDGPDEE----ADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCcEEEEEECccCccch----hhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999998754332 2223322 2 278999999999975411 222222 24455 48999999999
Q ss_pred CHHHHHHHHHH
Q 028294 155 NVEEAFIKTAA 165 (211)
Q Consensus 155 ~i~~~~~~i~~ 165 (211)
|++++++.+.+
T Consensus 149 gv~~l~~~I~~ 159 (435)
T PRK00093 149 GIGDLLDAILE 159 (435)
T ss_pred CHHHHHHHHHh
Confidence 99999998887
No 177
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=8.6e-20 Score=148.10 Aligned_cols=163 Identities=16% Similarity=0.092 Sum_probs=113.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh-------hchHHHhcc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------SITRSYYRG 78 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~~~ 78 (211)
...|+|+|.++||||||+|+|++.+......+.++.......+.+++ ...+.++|+||..... ......+..
T Consensus 159 iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 159 LADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred cccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 34799999999999999999998765433334334444444444432 2347899999964311 112234788
Q ss_pred ccEEEEEEECC---CHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEeCC
Q 028294 79 AAGALLVYDIT---RRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASAR 151 (211)
Q Consensus 79 ~d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~s~~ 151 (211)
+|++++|+|++ +...+.....|+..+..+.. .+.|+++|+||+|+...... .+....+....+ .+++.+||+
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence 99999999988 44566777777777766532 46899999999998653322 233444444433 468999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 028294 152 TAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 152 ~~~~i~~~~~~i~~~~~~~ 170 (211)
++.+++++++.|.+.+.+.
T Consensus 317 tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCcCHHHHHHHHHHHhhhC
Confidence 9999999999999888654
No 178
>COG1159 Era GTPase [General function prediction only]
Probab=99.85 E-value=3.7e-20 Score=141.17 Aligned_cols=161 Identities=20% Similarity=0.110 Sum_probs=116.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc--------hhhchHHH
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSY 75 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~ 75 (211)
-+.--|+++|.|++|||||+|+|++.+....+..+.++...+..+...+ +.++.|+||||... ........
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~-~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD-NAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC-CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 3456799999999999999999999999888777767777776665544 66889999999432 22244556
Q ss_pred hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-CcEEEEeCCCCC
Q 028294 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-LLFLEASARTAQ 154 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~ 154 (211)
+..+|+++||+|+.++..- .....++.+.. .+.|+++++||.|...+................ ..++++||++|.
T Consensus 83 l~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~ 158 (298)
T COG1159 83 LKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD 158 (298)
T ss_pred hccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence 7899999999999884321 11222333333 378999999999987655422333333333333 369999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 028294 155 NVEEAFIKTAAKILQ 169 (211)
Q Consensus 155 ~i~~~~~~i~~~~~~ 169 (211)
|++.+.+.+...+.+
T Consensus 159 n~~~L~~~i~~~Lpe 173 (298)
T COG1159 159 NVDTLLEIIKEYLPE 173 (298)
T ss_pred CHHHHHHHHHHhCCC
Confidence 999998888776643
No 179
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.85 E-value=6e-20 Score=156.19 Aligned_cols=155 Identities=20% Similarity=0.209 Sum_probs=113.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+.|+++|+.++|||||+++|++.. +.++.....+.+.....+..++ ..+.+||+||++.+.......+..+|++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 479999999999999999999643 3333444445555544455555 67899999999999988888899999999
Q ss_pred EEEECCC---HHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCC--CHHHHHHHHHHc----CCcEEEEeCCCC
Q 028294 84 LVYDITR---RETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV--SKEEGEQFAKEN----GLLFLEASARTA 153 (211)
Q Consensus 84 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~s~~~~ 153 (211)
+|+|+++ +.+.+.+. .+.. .+.| ++|++||+|+.+.... ..++...+.... +++++++|+++|
T Consensus 79 LVVDa~~G~~~qT~ehl~----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG 151 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG 151 (581)
T ss_pred EEEECCCCCcHHHHHHHH----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence 9999988 44443332 2222 2667 9999999999653321 123444554443 578999999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 028294 154 QNVEEAFIKTAAKILQN 170 (211)
Q Consensus 154 ~~i~~~~~~i~~~~~~~ 170 (211)
.|++++++.|.+.+...
T Consensus 152 ~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 152 QGIGELKKELKNLLESL 168 (581)
T ss_pred CCchhHHHHHHHHHHhC
Confidence 99999999887766443
No 180
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=3e-20 Score=154.00 Aligned_cols=151 Identities=22% Similarity=0.184 Sum_probs=104.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCeeeEEEEEEEEECCEEEEEEEEeCCCc--------cchhhchHHHhcc
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ--------ESFRSITRSYYRG 78 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~--------~~~~~~~~~~~~~ 78 (211)
+|+++|.+|||||||+|+|++...... ..+..+.+.....+..++. .+.+|||||. +.+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 589999999999999999998764322 2222233333334445544 5889999996 3344556677899
Q ss_pred ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHH
Q 028294 79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVE 157 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~ 157 (211)
+|++++|+|..++.+.... .+...+.+ .+.|+++|+||+|+...... ... ....++ +++++||.+|.|+.
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 9999999999875433221 22222222 27899999999998653321 112 234565 69999999999999
Q ss_pred HHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQ 169 (211)
Q Consensus 158 ~~~~~i~~~~~~ 169 (211)
++++.+.+.+..
T Consensus 150 ~ll~~i~~~l~~ 161 (429)
T TIGR03594 150 DLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHhcCc
Confidence 999998877643
No 181
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.85 E-value=6.4e-20 Score=156.30 Aligned_cols=162 Identities=23% Similarity=0.267 Sum_probs=115.8
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCC--C-----CC------CCCeeeEEEEEEEEE-----CCEEEEEEEEeC
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--P-----VH------DLTIGVEFGARMVTI-----DGRPIKLQIWDT 62 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~--~-----~~------~~~~~~~~~~~~~~~-----~~~~~~l~l~D~ 62 (211)
|+.++.-+|+++|+.++|||||+.+|+..... . .. ....|.++....+.+ ++..+.+.||||
T Consensus 2 ~~~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDT 81 (600)
T PRK05433 2 MDMKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDT 81 (600)
T ss_pred CccccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEEC
Confidence 45566779999999999999999999863211 0 00 112244444333333 555788999999
Q ss_pred CCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC
Q 028294 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG 142 (211)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 142 (211)
||+..+...+..++..+|++|+|+|+++.........|.... ..+.|+++|+||+|+.+.. ..+....+....+
T Consensus 82 PGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~--~~~v~~ei~~~lg 155 (600)
T PRK05433 82 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAAD--PERVKQEIEDVIG 155 (600)
T ss_pred CCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCccc--HHHHHHHHHHHhC
Confidence 999999999999999999999999999865555444443322 1378999999999985422 1122233434445
Q ss_pred Cc---EEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 143 LL---FLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 143 ~~---~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
+. ++++||++|.|++++++.|.+.+.
T Consensus 156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 156 IDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred CCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 43 899999999999999999887764
No 182
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.84 E-value=7.8e-20 Score=157.30 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=110.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEE--EEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA--RMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
....|+|+|+.++|||||+++|....+.....+..+.+... ..+..++....+.||||||++.|..++...+..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 56799999999999999999999877655433333322222 2233344567899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH-------HHHcC--CcEEEEeCCCC
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF-------AKENG--LLFLEASARTA 153 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-------~~~~~--~~~~~~s~~~~ 153 (211)
|+|+|+++....+....| ..+ ...+.|++|++||+|+.... .+..... ....+ ++++++||++|
T Consensus 323 ILVVDA~dGv~~QT~E~I-~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAI-NYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEECcCCCChhhHHHH-HHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 999999874322222111 122 22479999999999996522 2222221 12223 67999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028294 154 QNVEEAFIKTAAKI 167 (211)
Q Consensus 154 ~~i~~~~~~i~~~~ 167 (211)
.|++++++.|....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999887653
No 183
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.84 E-value=8.3e-20 Score=159.15 Aligned_cols=155 Identities=21% Similarity=0.162 Sum_probs=102.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc--------hhhchHHHh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSYY 76 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~~ 76 (211)
...+|+++|.++||||||+|+|++........ ..|.+..............+.+|||||.+. +......++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~-~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVED-TPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 34789999999999999999999876432221 223333333222222234578999999653 233445678
Q ss_pred ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCC
Q 028294 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQN 155 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 155 (211)
..+|++|+|+|+.+...... ..|...+.. .+.|+++|+||+|+.... .....+. ..+. ..+++||++|.|
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHGRG 423 (712)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCCCC
Confidence 89999999999987422111 133344433 489999999999985421 1122221 2232 467999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKILQ 169 (211)
Q Consensus 156 i~~~~~~i~~~~~~ 169 (211)
+++++++|.+.+..
T Consensus 424 I~eLl~~i~~~l~~ 437 (712)
T PRK09518 424 VGDLLDEALDSLKV 437 (712)
T ss_pred chHHHHHHHHhccc
Confidence 99999999988754
No 184
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.84 E-value=1.7e-19 Score=156.40 Aligned_cols=152 Identities=20% Similarity=0.227 Sum_probs=109.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..+.|+|+|+.++|||||+++|....+.....+..+.+.....+.+++ ..+.||||||++.|..++...+..+|++|+
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 568899999999999999999998776654444333344333444444 568899999999999999889999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHH-------HHHHcC--CcEEEEeCCCCCC
Q 028294 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ-------FAKENG--LLFLEASARTAQN 155 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------~~~~~~--~~~~~~s~~~~~~ 155 (211)
|||+++...-+.... +......+.|++|++||+|+.+.. .+.... ++..++ ++++++||++|.|
T Consensus 367 VVdAddGv~~qT~e~----i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~G 439 (787)
T PRK05306 367 VVAADDGVMPQTIEA----INHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEG 439 (787)
T ss_pred EEECCCCCCHhHHHH----HHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCC
Confidence 999988422111111 222222479999999999996421 122211 122222 6799999999999
Q ss_pred HHHHHHHHHH
Q 028294 156 VEEAFIKTAA 165 (211)
Q Consensus 156 i~~~~~~i~~ 165 (211)
+++++++|..
T Consensus 440 I~eLle~I~~ 449 (787)
T PRK05306 440 IDELLEAILL 449 (787)
T ss_pred chHHHHhhhh
Confidence 9999999875
No 185
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.84 E-value=8.5e-23 Score=144.31 Aligned_cols=172 Identities=36% Similarity=0.643 Sum_probs=146.5
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEE-EEEEEEeCCCccchhhchHHHhcccc
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP-IKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
..+..++++|+|..|+|||+++.+++...++..+..++++++..+....+... ++++|||++|++++..+...+++.++
T Consensus 21 kr~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~ 100 (229)
T KOG4423|consen 21 KREHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAH 100 (229)
T ss_pred hhhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCc
Confidence 34677899999999999999999999999999999999999888877776544 58899999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCCCCCC-CHHHHHHHHHHcCCc-EEEEeCCCCC
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKENGLL-FLEASARTAQ 154 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~-~~~~s~~~~~ 154 (211)
+.++|||++..-+|+....|.+.+..... .-.|+++..||||+...... ......++++++++. .+++|++.+.
T Consensus 101 ~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 101 GAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred ceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 99999999999999999999988755432 34677888999998653322 246778888889875 9999999999
Q ss_pred CHHHHHHHHHHHHHHHHhh
Q 028294 155 NVEEAFIKTAAKILQNIQE 173 (211)
Q Consensus 155 ~i~~~~~~i~~~~~~~~~~ 173 (211)
++.|+-+.++++++..-.+
T Consensus 181 ni~Ea~r~lVe~~lvnd~q 199 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVNDEQ 199 (229)
T ss_pred ChhHHHHHHHHHHHhhccC
Confidence 9999999999988766543
No 186
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.84 E-value=1.5e-19 Score=153.92 Aligned_cols=146 Identities=20% Similarity=0.209 Sum_probs=107.5
Q ss_pred cCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc------hHHHh--ccccEEEE
Q 028294 13 GDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI------TRSYY--RGAAGALL 84 (211)
Q Consensus 13 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------~~~~~--~~~d~~i~ 84 (211)
|.+|+|||||+|+|.+........+..+.+.....+.+++. .+.+|||||...+... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999988765444555556555555666654 4789999998776543 33333 47899999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
|+|+++.+.. ..+...+. +.+.|+++++||+|+.+..... .+.+.+.+..+++++++||++|.|++++++.+.
T Consensus 79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 9999874321 12222222 2479999999999986544443 346677778899999999999999999999998
Q ss_pred HHH
Q 028294 165 AKI 167 (211)
Q Consensus 165 ~~~ 167 (211)
+..
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 187
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.6e-20 Score=131.41 Aligned_cols=161 Identities=25% Similarity=0.340 Sum_probs=121.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCC-----C--CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHh
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF-----Q--PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYY 76 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~ 76 (211)
-..+.|+|+|..++|||||+.++..... . ....+++|... .++.+. +..+.+||.+|++..+++|..||
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLni--g~i~v~--~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNI--GTIEVC--NAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceee--cceeec--cceeEEEEcCChHHHHHHHHHHH
Confidence 3457899999999999999998753211 1 12223334333 334444 55688999999999999999999
Q ss_pred ccccEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH------HcCCcEEEEe
Q 028294 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK------ENGLLFLEAS 149 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~s 149 (211)
..+|++|++||+.+++.++.....++.+.... ..+.|+++.+||.|+.+. +...+++.... +...++.++|
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~--~~~~El~~~~~~~e~~~~rd~~~~pvS 168 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA--MEAAELDGVFGLAELIPRRDNPFQPVS 168 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh--hhHHHHHHHhhhhhhcCCccCccccch
Confidence 99999999999999998888776666554433 369999999999999663 33344443333 2345699999
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 028294 150 ARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~~~~~~~ 170 (211)
|.+|.||++..+|+...+.++
T Consensus 169 al~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 169 ALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999888665
No 188
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.84 E-value=1.3e-19 Score=129.50 Aligned_cols=151 Identities=21% Similarity=0.135 Sum_probs=102.2
Q ss_pred EEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh-------chHHHhccccEE
Q 028294 11 IIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-------ITRSYYRGAAGA 82 (211)
Q Consensus 11 vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~~~~~~~d~~ 82 (211)
++|++|+|||||+++|.+.... .......+............ ...+.+||+||...... ....++..+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999977554 23333323333333333321 45689999999765443 344578899999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHH---HHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE---EGEQFAKENGLLFLEASARTAQNVEEA 159 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~i~~~ 159 (211)
++|+|+.+........ +..... ..+.|+++++||+|+......... .........+.+++++|++++.|+.++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l 155 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL 155 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence 9999999876654443 222222 248999999999998654322211 112222335678999999999999999
Q ss_pred HHHHHHH
Q 028294 160 FIKTAAK 166 (211)
Q Consensus 160 ~~~i~~~ 166 (211)
++++.+.
T Consensus 156 ~~~l~~~ 162 (163)
T cd00880 156 REALIEA 162 (163)
T ss_pred HHHHHhh
Confidence 9988764
No 189
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.3e-20 Score=132.46 Aligned_cols=163 Identities=29% Similarity=0.550 Sum_probs=141.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.++++++|..|.|||+++++++.+.|...+.+++|.........-+-..+++..|||+|++.+..+...++-+....|++
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAiim 89 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIM 89 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEEE
Confidence 68999999999999999999999999999999999999888665555568999999999999999999999899999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHH
Q 028294 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
||+..+.++.++..|...+.+.+. ++|+++++||.|..+.. .......+.+..++.+++.|++.+.|+..-|.++.+
T Consensus 90 FdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~Lar 166 (216)
T KOG0096|consen 90 FDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLAR 166 (216)
T ss_pred eeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHHhh
Confidence 999999999999999999887775 79999999999986533 123334455567888999999999999999999998
Q ss_pred HHHHHH
Q 028294 166 KILQNI 171 (211)
Q Consensus 166 ~~~~~~ 171 (211)
.+.-..
T Consensus 167 Kl~G~p 172 (216)
T KOG0096|consen 167 KLTGDP 172 (216)
T ss_pred hhcCCC
Confidence 875443
No 190
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.83 E-value=2.4e-20 Score=138.07 Aligned_cols=159 Identities=23% Similarity=0.231 Sum_probs=106.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC----------------CCCeeeEEEEEEEEEC--CEEEEEEEEeCCCcc
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMVTID--GRPIKLQIWDTAGQE 66 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~--~~~~~l~l~D~~G~~ 66 (211)
...+|+++|+.++|||||+++|+........ ....+.+.......+. .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4579999999999999999999854422110 0001222222223333 455678999999999
Q ss_pred chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC-CCHHHHH-HHHHHc---
Q 028294 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGE-QFAKEN--- 141 (211)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~-~~~~~~--- 141 (211)
.+.......+..+|++|+|+|+.+..... ....+..+... +.|++|++||+|+...+. ...++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~ 157 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN 157 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred ceeecccceecccccceeeeecccccccc-ccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence 99988888899999999999998764322 22333333333 789999999999962110 0011122 232222
Q ss_pred ---CCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 142 ---GLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 142 ---~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
.++++++|+.+|.|++++++.|.+.+
T Consensus 158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 158 GEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp TTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 25799999999999999999888765
No 191
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=2.5e-19 Score=148.78 Aligned_cols=157 Identities=24% Similarity=0.154 Sum_probs=104.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh-----------ch
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-----------IT 72 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-----------~~ 72 (211)
..++|+++|.+|+|||||+|+|++..... ...+..+.+.....+..++ ..+.+|||||...... ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 46899999999999999999999765322 2222223333223333444 4577999999643211 12
Q ss_pred HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHH-HHHH----cCCcEEE
Q 028294 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ-FAKE----NGLLFLE 147 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-~~~~----~~~~~~~ 147 (211)
..++..+|++|+|+|+.++.+..... ++..+.. .+.|+++++||+|+.+... .++... .... ..+++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~~ 323 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIVF 323 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEEE
Confidence 34678899999999999876655442 2233322 3789999999999863221 122221 1111 3568999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHH
Q 028294 148 ASARTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 148 ~s~~~~~~i~~~~~~i~~~~~~ 169 (211)
+||+++.|++++++.+.+.+..
T Consensus 324 ~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 324 ISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred EeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998876543
No 192
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.83 E-value=6.7e-19 Score=153.33 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=113.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc----------hHHH
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI----------TRSY 75 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~----------~~~~ 75 (211)
.++|+++|++|||||||+|+|.+...... ...|.+...+...++.....+.+||+||...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vg--n~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVG--NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 57899999999999999999998765332 22456666655556666677899999997665421 2223
Q ss_pred h--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Q 028294 76 Y--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA 153 (211)
Q Consensus 76 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 153 (211)
+ ..+|++|+|+|+++.+... .+...+.+ .+.|+++++||+|+.+.+.. ....+++.+..+++++++|++++
T Consensus 81 l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred HhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecC
Confidence 2 4789999999998864322 23334433 37999999999998654443 34567777888999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028294 154 QNVEEAFIKTAAKI 167 (211)
Q Consensus 154 ~~i~~~~~~i~~~~ 167 (211)
.|++++.+.+.+..
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999998887654
No 193
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.82 E-value=1.6e-18 Score=146.94 Aligned_cols=159 Identities=20% Similarity=0.187 Sum_probs=104.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC----------------CEEEEEEEEeCCCccchh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID----------------GRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~l~D~~G~~~~~ 69 (211)
..-|+++|++++|||||+++|.+..+........+.+.....+..+ .....+.||||||++.+.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 4579999999999999999999887654332221111111111111 011237899999999999
Q ss_pred hchHHHhccccEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC----CC--------HHHH
Q 028294 70 SITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA----VS--------KEEG 134 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~--------~~~~ 134 (211)
.++..+++.+|++++|+|+++ +.++..+.. +.. .+.|+++++||+|+.+... .. .+..
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 999999999999999999987 444443321 221 3789999999999953110 00 0000
Q ss_pred ------------HHHHH------------H--cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028294 135 ------------EQFAK------------E--NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 135 ------------~~~~~------------~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 171 (211)
.++.. . ..++++++||++|+|+++++++|.......+
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~~~l 219 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQQYL 219 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHHHHh
Confidence 01110 0 1357999999999999999998876554433
No 194
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.81 E-value=9.4e-19 Score=130.91 Aligned_cols=117 Identities=16% Similarity=0.341 Sum_probs=88.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccc-cEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGA-AGALLVY 86 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~-d~~i~v~ 86 (211)
+|+++|++|||||+|+++|....+...+.++ ............+....+.+||+||+..+...+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988776654433 2222222222223456789999999999998888899998 9999999
Q ss_pred ECCCH-HHHHHHHHHHHHHHHh---cCCCCeEEEEEecCCCCC
Q 028294 87 DITRR-ETFNHLSSWLEDARQH---ANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 87 d~~~~-~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~ 125 (211)
|+.+. .++.....|+..+... ...+.|++|++||.|+..
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 99997 6677766666554322 225899999999999854
No 195
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=4.1e-18 Score=120.96 Aligned_cols=157 Identities=22% Similarity=0.302 Sum_probs=117.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC--------CCC--CeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchH
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------HDL--TIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR 73 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~ 73 (211)
.+..||+|.|+.++||||+++++........ ... +.++......+.+++ ...+.+++||||+++...|.
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~-~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE-DTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC-cceEEEecCCCcHHHHHHHH
Confidence 4678999999999999999999987664111 111 122222222333333 24578999999999999999
Q ss_pred HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc--CCcEEEEeCC
Q 028294 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN--GLLFLEASAR 151 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~s~~ 151 (211)
.+.+.+.++|+++|.+.+..+ .....++.+.... ..|++|++||.|+.+ ..+.+.+++..... .+++++.++.
T Consensus 87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~~~~~~vi~~~a~ 161 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFD--ALPPEKIREALKLELLSVPVIEIDAT 161 (187)
T ss_pred HHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCC--CCCHHHHHHHHHhccCCCceeeeecc
Confidence 999999999999999998887 4444444444432 299999999999976 34567776666655 7899999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028294 152 TAQNVEEAFIKTAAK 166 (211)
Q Consensus 152 ~~~~i~~~~~~i~~~ 166 (211)
++++..+.++.+...
T Consensus 162 e~~~~~~~L~~ll~~ 176 (187)
T COG2229 162 EGEGARDQLDVLLLK 176 (187)
T ss_pred cchhHHHHHHHHHhh
Confidence 999999988877655
No 196
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=4.6e-19 Score=142.28 Aligned_cols=149 Identities=21% Similarity=0.139 Sum_probs=103.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-eeeEEEEEEEEECCEEEEEEEEeCCCccchh---------hchHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-IGVEFGARMVTIDGRPIKLQIWDTAGQESFR---------SITRSYY 76 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~---------~~~~~~~ 76 (211)
..|+++|.|+||||||+|||++.+.......+ ++.+.......+.+. .+.+.||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 67999999999999999999998876543332 233332333444443 47899999965322 2466778
Q ss_pred ccccEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCC
Q 028294 77 RGAAGALLVYDITRRETF--NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTA 153 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 153 (211)
..+|++|||+|.....+- ..+..| .+. .++|+++|+||+|... .++.....-..|+ .++.+||..|
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~----Lr~--~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg 150 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKI----LRR--SKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHG 150 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHH----HHh--cCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhc
Confidence 999999999999774332 222232 222 2799999999999742 2222222333444 6999999999
Q ss_pred CCHHHHHHHHHHHHH
Q 028294 154 QNVEEAFIKTAAKIL 168 (211)
Q Consensus 154 ~~i~~~~~~i~~~~~ 168 (211)
.|+.++++.+++.+.
T Consensus 151 ~Gi~dLld~v~~~l~ 165 (444)
T COG1160 151 RGIGDLLDAVLELLP 165 (444)
T ss_pred cCHHHHHHHHHhhcC
Confidence 999999988888874
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=3.7e-19 Score=147.08 Aligned_cols=159 Identities=19% Similarity=0.124 Sum_probs=107.1
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCeeeEEEEEEEEEC
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMVTID 51 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 51 (211)
|+....++|+++|++++|||||+++|+....... .....|.+.......++
T Consensus 1 ~~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~ 80 (425)
T PRK12317 1 AKEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE 80 (425)
T ss_pred CCCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe
Confidence 6777889999999999999999999984322110 01123555555555666
Q ss_pred CEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--
Q 028294 52 GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-- 128 (211)
Q Consensus 52 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-- 128 (211)
.....+.||||||++.+.......+..+|++|+|+|++++..... ...++....... ..|+++++||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~ 158 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--INQLIVAINKMDAVNYDEKR 158 (425)
T ss_pred cCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--CCeEEEEEEccccccccHHH
Confidence 667789999999998887766666789999999999987311111 112222222221 347999999999964221
Q ss_pred --CCHHHHHHHHHHcC-----CcEEEEeCCCCCCHHHHHH
Q 028294 129 --VSKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 129 --~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~~ 161 (211)
...++...++...+ .+++++||++|.|+++..+
T Consensus 159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 11234445555444 4699999999999998553
No 198
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=1e-18 Score=126.40 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=99.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----------hhhchHHHhc
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----------FRSITRSYYR 77 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~~~~~~ 77 (211)
.|+++|++|+|||||++.|.+....+...++.+.+.....+..+. .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999997666555555555555555444444 788999999432 3333444443
Q ss_pred ---cccEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC--HHHHHHHHH--HcCCcEEEE
Q 028294 78 ---GAAGALLVYDITRRETF--NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAK--ENGLLFLEA 148 (211)
Q Consensus 78 ---~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~--~~~~~~~~~ 148 (211)
..+++++++|..+..+. ..+..|+.. .+.|+++++||+|+....... ......... ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 45688999998765321 222233322 268999999999985432111 112222222 234579999
Q ss_pred eCCCCCCHHHHHHHHHHH
Q 028294 149 SARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 149 s~~~~~~i~~~~~~i~~~ 166 (211)
|++++.++.++++.|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999988765
No 199
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.81 E-value=2.5e-18 Score=149.93 Aligned_cols=157 Identities=24% Similarity=0.219 Sum_probs=108.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----------hhhc-h
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----------FRSI-T 72 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~-~ 72 (211)
..++|+++|.+|||||||+|+|++.... ....+.++.+.....+.+++.. +.+|||||... +..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 4589999999999999999999988743 2223333444444455666655 56999999532 1111 2
Q ss_pred HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-H----cCCcEEE
Q 028294 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-E----NGLLFLE 147 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~----~~~~~~~ 147 (211)
...++.+|++|+|+|+++..+...+. ++..+.. .++|+++|+||+|+.+... .+....... . ...++++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~ 600 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN 600 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence 34468899999999999987766654 3333332 3799999999999965321 122222221 1 2346799
Q ss_pred EeCCCCCCHHHHHHHHHHHHHH
Q 028294 148 ASARTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 148 ~s~~~~~~i~~~~~~i~~~~~~ 169 (211)
+||++|.|++++++.+.+.+.+
T Consensus 601 iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 601 LSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999887765
No 200
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.80 E-value=7.1e-18 Score=128.60 Aligned_cols=151 Identities=25% Similarity=0.206 Sum_probs=101.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh-------hchHHHhcccc
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------SITRSYYRGAA 80 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~~~~d 80 (211)
+|+++|++|+|||||+++|.+........+..+.+.....+.+++ ..+++||+||..... ......++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 789999999999999999998764333333334444444445554 567899999974322 23345789999
Q ss_pred EEEEEEECCCHH-HHHHHHHHHHH-----------------------------------------HHHh-----------
Q 028294 81 GALLVYDITRRE-TFNHLSSWLED-----------------------------------------ARQH----------- 107 (211)
Q Consensus 81 ~~i~v~d~~~~~-~~~~~~~~~~~-----------------------------------------~~~~----------- 107 (211)
++++|+|++++. ....+...+.. +.++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 22222222210 0000
Q ss_pred -----------c--CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 108 -----------A--NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 108 -----------~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
. ..-.|+++|+||+|+.. .++...++. ...++++||+++.|++++++.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 12368999999999843 344444443 34589999999999999999888754
No 201
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.80 E-value=5.1e-18 Score=129.62 Aligned_cols=113 Identities=18% Similarity=0.155 Sum_probs=82.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCC----------------CCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH----------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~ 71 (211)
+|+++|+.|+|||||+++|+........ ....+.++......+.....++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999864221100 112233444444555555678999999999999888
Q ss_pred hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028294 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 124 (211)
+..+++.+|++|+|+|+.+.... ....++..+.. .+.|+++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECcccc
Confidence 89999999999999999886432 33445554443 378999999999985
No 202
>PRK10218 GTP-binding protein; Provisional
Probab=99.79 E-value=5.2e-18 Score=144.18 Aligned_cols=159 Identities=18% Similarity=0.147 Sum_probs=111.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC--CCCCC------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 70 (211)
..-+|+++|+.++|||||+++|+.. .+... .....+.++......++.....+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 3468999999999999999999963 22221 123456777777777777778899999999999999
Q ss_pred chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC-CCHHHHHHHHHH-------cC
Q 028294 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-VSKEEGEQFAKE-------NG 142 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~-------~~ 142 (211)
.+..+++.+|++|+|+|+.+..... ...++..... .+.|.++++||+|+..... ...++...+... ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~q-t~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQ-TRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHH-HHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccC
Confidence 9999999999999999998753322 2333333332 3789999999999864321 112333333211 34
Q ss_pred CcEEEEeCCCCC----------CHHHHHHHHHHHH
Q 028294 143 LLFLEASARTAQ----------NVEEAFIKTAAKI 167 (211)
Q Consensus 143 ~~~~~~s~~~~~----------~i~~~~~~i~~~~ 167 (211)
++++.+|+++|. ++..+++.|.+.+
T Consensus 160 ~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 160 FPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred CCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 679999999998 4555555444443
No 203
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.79 E-value=1.8e-18 Score=147.12 Aligned_cols=156 Identities=21% Similarity=0.220 Sum_probs=111.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC--CCCCCC------------CCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchH
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK--RFQPVH------------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR 73 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~ 73 (211)
+|+++|+.++|||||+++|+.. .+.... ....|.++......++.....+.||||||+..|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999863 221111 11235566655555655667899999999999999999
Q ss_pred HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC-CHHHHHHHHH-------HcCCcE
Q 028294 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAK-------ENGLLF 145 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~ 145 (211)
.++..+|++++|+|+.+.. ......|+..+.. .+.|++|++||+|+.+.... ..++...+.. ...+++
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pv 158 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPI 158 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcE
Confidence 9999999999999998742 3344455555544 37899999999998643211 1233333332 235679
Q ss_pred EEEeCCCCC----------CHHHHHHHHHHHH
Q 028294 146 LEASARTAQ----------NVEEAFIKTAAKI 167 (211)
Q Consensus 146 ~~~s~~~~~----------~i~~~~~~i~~~~ 167 (211)
+.+|+++|. ++..+|+.|.+.+
T Consensus 159 l~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 159 VYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred EechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 999999996 6888877776655
No 204
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.79 E-value=1.7e-18 Score=143.14 Aligned_cols=154 Identities=19% Similarity=0.139 Sum_probs=104.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCC--CCCC---------------------------CCCCeeeEEEEEEEEECCEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV---------------------------HDLTIGVEFGARMVTIDGRPI 55 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (211)
..++|+++|+.++|||||+.+|+... .... .....|.+.......+.....
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 56899999999999999999998521 1100 001124445555555666667
Q ss_pred EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHH--HHHHhcCCCCeEEEEEecCCCCCCCCC----
Q 028294 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLE--DARQHANPNMSIMLVGNKCDLAHRRAV---- 129 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~p~ivv~nK~Dl~~~~~~---- 129 (211)
.+.|||+||++.+.......+..+|++|+|+|+++.++... ..+.. .+.... ...|++|++||+|+.+....
T Consensus 86 ~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~-~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~~~~~ 163 (426)
T TIGR00483 86 EVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQ-PQTREHAFLARTL-GINQLIVAINKMDSVNYDEEEFEA 163 (426)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccC-CchHHHHHHHHHc-CCCeEEEEEEChhccCccHHHHHH
Confidence 89999999999887777777889999999999998743211 11111 122222 13579999999999642211
Q ss_pred CHHHHHHHHHHcC-----CcEEEEeCCCCCCHHHHH
Q 028294 130 SKEEGEQFAKENG-----LLFLEASARTAQNVEEAF 160 (211)
Q Consensus 130 ~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~ 160 (211)
..+++..++...+ ++++++||++|.|+.+.+
T Consensus 164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1234555665554 569999999999998754
No 205
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.79 E-value=1.8e-18 Score=129.92 Aligned_cols=149 Identities=19% Similarity=0.149 Sum_probs=95.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------------------------CCCeeeEEEEEEEEECCEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------------------------DLTIGVEFGARMVTIDGRPIKLQ 58 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~l~ 58 (211)
+|+++|++++|||||+++|+...-.... ....+.+.......+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999754322110 00023333333333444455788
Q ss_pred EEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC----CHHHH
Q 028294 59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV----SKEEG 134 (211)
Q Consensus 59 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~ 134 (211)
||||||++.+.......+..+|++|+|+|++++..-.. ...+..+.... ..++++++||+|+.+.... ...+.
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~~~--~~~iIvviNK~D~~~~~~~~~~~i~~~~ 157 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSLLG--IRHVVVAVNKMDLVDYSEEVFEEIVADY 157 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHHcC--CCcEEEEEEchhcccCCHHHHHHHHHHH
Confidence 99999998887667777899999999999987532111 12222222221 2457888999998642211 11233
Q ss_pred HHHHHHcC---CcEEEEeCCCCCCHHHH
Q 028294 135 EQFAKENG---LLFLEASARTAQNVEEA 159 (211)
Q Consensus 135 ~~~~~~~~---~~~~~~s~~~~~~i~~~ 159 (211)
..+....+ .+++++||+++.|+.+.
T Consensus 158 ~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 158 LAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 44445555 34899999999998864
No 206
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.79 E-value=1.4e-18 Score=117.79 Aligned_cols=156 Identities=22% Similarity=0.319 Sum_probs=115.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|-.++|||||++.|.+... ....++.|.. .+.+..++ .+.+.+||.+|+...+..|..|+.+.|++|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn--~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFN--TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcc--eEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEE
Confidence 4679999999999999999999986543 2333444443 33344443 678999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC-----CcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG-----LLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~ 157 (211)
||+|.+|.-.|+.+..-+-++.... ....|+.|+.||.|+.-. +..++....+...+ .-+-++|+..++|+.
T Consensus 91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdllta--a~~eeia~klnl~~lrdRswhIq~csals~eg~~ 168 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTA--AKVEEIALKLNLAGLRDRSWHIQECSALSLEGST 168 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh--cchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence 9999999888887776555554433 368999999999998532 22333332222222 237899999999998
Q ss_pred HHHHHHHH
Q 028294 158 EAFIKTAA 165 (211)
Q Consensus 158 ~~~~~i~~ 165 (211)
+-.+++..
T Consensus 169 dg~~wv~s 176 (185)
T KOG0074|consen 169 DGSDWVQS 176 (185)
T ss_pred Ccchhhhc
Confidence 88777654
No 207
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=4.7e-18 Score=136.83 Aligned_cols=154 Identities=22% Similarity=0.235 Sum_probs=109.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc--------hHHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI--------TRSY 75 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~ 75 (211)
.-++++++|.|++|||||+|.|++...... ..+-++.+.-...+.++|.+ +.+.||+|..+.... ....
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHHH
Confidence 358999999999999999999998876543 33333455555556666655 679999996654442 3455
Q ss_pred hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028294 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
+.++|.+++|+|.+.+.+-..... +. ....++|+++|.||.|+....... . .....+.+++.+|++++.|
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~~-~~----~~~~~~~~i~v~NK~DL~~~~~~~--~---~~~~~~~~~i~iSa~t~~G 363 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLAL-IE----LLPKKKPIIVVLNKADLVSKIELE--S---EKLANGDAIISISAKTGEG 363 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHHH-HH----hcccCCCEEEEEechhcccccccc--h---hhccCCCceEEEEecCccC
Confidence 789999999999998632222111 11 233489999999999997643311 1 1112445799999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKILQN 170 (211)
Q Consensus 156 i~~~~~~i~~~~~~~ 170 (211)
++++.+.|.+.+...
T Consensus 364 l~~L~~~i~~~~~~~ 378 (454)
T COG0486 364 LDALREAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999988888766
No 208
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.78 E-value=9e-18 Score=134.89 Aligned_cols=160 Identities=24% Similarity=0.183 Sum_probs=111.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----------hhh-chH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----------FRS-ITR 73 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~-~~~ 73 (211)
..++|+++|.|++|||||+|+|++..-...+..+ |++.......++.....+.++||+|..+ +.. -..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~a-GTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIA-GTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCC-CccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 4699999999999999999999988765444433 4455444444443344577999999432 211 244
Q ss_pred HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEE
Q 028294 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEA 148 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~ 148 (211)
..+..+|.+++|+|+..+.+-+..+ ....+. +.+.+++|++||+|+.+......++.+..... ..++++++
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~---~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~i 331 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLR-IAGLIE---EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI 331 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHH-HHHHHH---HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEE
Confidence 5678899999999999876543332 122222 23899999999999977544445554433332 24579999
Q ss_pred eCCCCCCHHHHHHHHHHHHHH
Q 028294 149 SARTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 149 s~~~~~~i~~~~~~i~~~~~~ 169 (211)
||+++.++.++|+.+.+....
T Consensus 332 SA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 332 SALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred EecCCCChHHHHHHHHHHHHH
Confidence 999999999999988776544
No 209
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.4e-17 Score=120.73 Aligned_cols=160 Identities=18% Similarity=0.201 Sum_probs=114.0
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC----------ccchhhc
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSI 71 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G----------~~~~~~~ 71 (211)
+.+..+.|+++|.++||||||||+|++++-......++|.|.....+.+++. +.++|.|| .+.+..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 3456789999999999999999999998765555566699999888888775 66999999 3455556
Q ss_pred hHHHhcc---ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH----cCCc
Q 028294 72 TRSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE----NGLL 144 (211)
Q Consensus 72 ~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~ 144 (211)
...|+.. ..++++++|+..+..-.+. .+++.+.. .+.|++|++||+|.....+.. ......+.. ....
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~---~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~ 171 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE---LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDD 171 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH---cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCcc
Confidence 6666644 4589999999886432221 33333333 389999999999986643332 222233322 2222
Q ss_pred --EEEEeCCCCCCHHHHHHHHHHHHHH
Q 028294 145 --FLEASARTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 145 --~~~~s~~~~~~i~~~~~~i~~~~~~ 169 (211)
++.+|+..+.|++++...|.+.+..
T Consensus 172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 172 QWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ceEEEEecccccCHHHHHHHHHHHhhc
Confidence 7889999999999998888887643
No 210
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.78 E-value=7.1e-18 Score=117.08 Aligned_cols=135 Identities=23% Similarity=0.256 Sum_probs=97.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC----ccchhhchHHHhccccEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----QESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G----~~~~~~~~~~~~~~~d~~i 83 (211)
||+++|+.|||||||+++|.+... .+..+..+.+ .+ .++|||| ...+.........++|.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~-------~~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY-------YD-----NTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe-------cc-----cEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 799999999999999999997654 3333322222 11 2589999 3344444555667999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCCCCHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~~ 162 (211)
+|.|++++.+.. -..+.... +.|+|=|+||+|+... ....+.++++.+..|+. +|++|+.+|+|++++.++
T Consensus 69 ll~dat~~~~~~-----pP~fa~~f--~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 69 LLQDATEPRSVF-----PPGFASMF--NKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred EEecCCCCCccC-----Cchhhccc--CCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence 999999864311 11222222 6899999999999732 33557777888888874 899999999999999887
Q ss_pred HH
Q 028294 163 TA 164 (211)
Q Consensus 163 i~ 164 (211)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 74
No 211
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.78 E-value=4.8e-18 Score=139.44 Aligned_cols=161 Identities=19% Similarity=0.163 Sum_probs=103.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEE--------------------EEECC------EEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARM--------------------VTIDG------RPIKL 57 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~--------------------~~~~~------~~~~l 57 (211)
..++|+++|+.++|||||+++|.+........ ...+.+..... ...++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 46899999999999999999997542211000 00111111110 00011 14578
Q ss_pred EEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHHHH
Q 028294 58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGE 135 (211)
Q Consensus 58 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~ 135 (211)
.+||+||++.+...+...+..+|++|+|+|++++.........+..+.... ..|+++++||+|+.+.... ..+++.
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~i~ 160 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEEIK 160 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHHHH
Confidence 999999999998888888889999999999986431111222222222221 3578999999999653211 123333
Q ss_pred HHHHHc---CCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 136 QFAKEN---GLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 136 ~~~~~~---~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
.+.... +++++++|+++|.|++++++.|...+
T Consensus 161 ~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 161 EFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred hhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 333332 56899999999999999998888755
No 212
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=2.2e-17 Score=122.50 Aligned_cols=148 Identities=18% Similarity=0.154 Sum_probs=100.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCC---------C-----CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ---------P-----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~---------~-----~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~ 71 (211)
.++|+++|+.++|||||+++|+..... . ......+.+.......+.....++.+.||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 478999999999999999999854100 0 01112355555555566666677899999999888887
Q ss_pred hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCC---CHHHHHHHHHHc-----C
Q 028294 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV---SKEEGEQFAKEN-----G 142 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~-----~ 142 (211)
....+..+|++++|+|+..... ......+..+... +.| +++++||+|+...... ..+++..+.... +
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~ 157 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN 157 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence 8888899999999999987432 1222333333332 566 7789999998532221 112344444443 3
Q ss_pred CcEEEEeCCCCCCHH
Q 028294 143 LLFLEASARTAQNVE 157 (211)
Q Consensus 143 ~~~~~~s~~~~~~i~ 157 (211)
++++++||++|.++.
T Consensus 158 v~iipiSa~~g~n~~ 172 (195)
T cd01884 158 TPIVRGSALKALEGD 172 (195)
T ss_pred CeEEEeeCccccCCC
Confidence 679999999998853
No 213
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=5.4e-19 Score=120.10 Aligned_cols=162 Identities=22% Similarity=0.305 Sum_probs=117.8
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+...+|+++|-.|+|||++..++.-.....+ .|+++... .++..++..+++||..|+-..+..|..|+.+.|++|
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnv----e~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNV----ETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCc----cccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence 4678999999999999999888875554333 33434443 234447788999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHH-HHHHHHhcCCCCeEEEEEecCCCCCCC---CCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028294 84 LVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNKCDLAHRR---AVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 159 (211)
+|+|.+|.......... +..+.+...++..+++++||.|..... ++...+.....+..-+.++++||.+|+|++..
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence 99999998765444433 333444444678889999999985321 11111222222333467999999999999999
Q ss_pred HHHHHHHHHHH
Q 028294 160 FIKTAAKILQN 170 (211)
Q Consensus 160 ~~~i~~~~~~~ 170 (211)
++|+.+.+.++
T Consensus 171 ~DWL~~~l~~~ 181 (182)
T KOG0072|consen 171 MDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHhcc
Confidence 99999887553
No 214
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.77 E-value=4.6e-17 Score=138.48 Aligned_cols=160 Identities=21% Similarity=0.217 Sum_probs=103.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC----eeeEEEEEEEE--ECCEE-----E-----EEEEEeCCCccch
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IGVEFGARMVT--IDGRP-----I-----KLQIWDTAGQESF 68 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~-----~-----~l~l~D~~G~~~~ 68 (211)
..+.|+++|+.++|||||+++|.+.......... .|.++...... ..+.. . .+.||||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 4567999999999999999999876543333221 12221111000 00111 1 2689999999999
Q ss_pred hhchHHHhccccEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC----CC-----------
Q 028294 69 RSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA----VS----------- 130 (211)
Q Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----~~----------- 130 (211)
..++...+..+|++|+|+|+++ +.++..+.. +.. .+.|+++++||+|+..... ..
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9988888899999999999987 555444432 222 3789999999999852100 00
Q ss_pred -HHH-------HHHHHHH---------------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028294 131 -KEE-------GEQFAKE---------------NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 131 -~~~-------~~~~~~~---------------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 171 (211)
.+. ....... ..++++++||.+|.|++++++.+.....+.+
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~~~~l 221 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLAQRYL 221 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHHHHHH
Confidence 000 0011111 1356899999999999999988875554433
No 215
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.77 E-value=4.9e-18 Score=128.13 Aligned_cols=162 Identities=20% Similarity=0.327 Sum_probs=102.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCccchhh-----chHHHhccccE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRS-----ITRSYYRGAAG 81 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~-----~~~~~~~~~d~ 81 (211)
||+++|+.++||||+.+. ..++..+......+.+......++ ....+.+++||+||+..+.. .....++.+++
T Consensus 1 KiLLmG~~~SGKTSi~~v-IF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSV-IFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHH-HHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHH-HHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999996554 445555544454455555554545 23456799999999875544 46788999999
Q ss_pred EEEEEECCCHHHHHH---HHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--CCH----HHHHHHHHHcC---CcEEEEe
Q 028294 82 ALLVYDITRRETFNH---LSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSK----EEGEQFAKENG---LLFLEAS 149 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~----~~~~~~~~~~~---~~~~~~s 149 (211)
+|||+|+.+.+..+. +...+..+.+.. ++..+.|+++|+|+..+.. ... +...+.+...+ +.++.+|
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS 158 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS 158 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence 999999985433333 444444444444 5899999999999854211 111 12223333444 6799999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHh
Q 028294 150 ARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~~~~~~~~~ 172 (211)
..+ +.+.+++..|++.+.-+.+
T Consensus 159 I~D-~Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 159 IWD-ESLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp TTS-THHHHHHHHHHHTTSTTHC
T ss_pred CcC-cHHHHHHHHHHHHHcccHH
Confidence 999 5999999999998875544
No 216
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.76 E-value=1.1e-17 Score=137.25 Aligned_cols=161 Identities=20% Similarity=0.196 Sum_probs=101.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCeeeEEEEEE--EEE------------------C--C----EEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARM--VTI------------------D--G----RPIK 56 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~--~~~------------------~--~----~~~~ 56 (211)
...++|+++|+.++|||||+.+|.+....... ....+.+..... ..+ + + ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 46789999999999999999999653211110 001122222110 000 0 0 1257
Q ss_pred EEEEeCCCccchhhchHHHhccccEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHH
Q 028294 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEE 133 (211)
Q Consensus 57 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~ 133 (211)
+.||||||++.+..........+|++++|+|+.++. ..... ..+..+.... ..|+++++||+|+.+.... ..++
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~~~~ 163 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EHLMALDIIG--IKNIVIVQNKIDLVSKERALENYEQ 163 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HHHHHHHHcC--CCcEEEEEEeeccccchhHHHHHHH
Confidence 899999999888776666667789999999999642 11111 1122222221 3478999999999653321 1233
Q ss_pred HHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 134 GEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 134 ~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
...++.. .+.+++++||+++.|++++++.|.+.+
T Consensus 164 i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 164 IKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 3344332 246899999999999999999887765
No 217
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.76 E-value=3.4e-17 Score=139.97 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=102.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+-|+++|+.++|||||+++|.+.. +.++.....+.+.....+...+ ...+.+||+||++.+.......+..+|+++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 358999999999999999999643 2222222223333222222222 234789999999999888888889999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCC--CHHHHHHHHHHcC---CcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV--SKEEGEQFAKENG---LLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~~---~~~~~~s~~~~~~i~ 157 (211)
+|+|+++... ......+..+... +.| ++||+||+|+.+.... ..++...+....+ .+++++|+++|.|++
T Consensus 80 LVVda~eg~~-~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 80 LVVACDDGVM-AQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 9999987321 1111222222222 455 5799999999653221 1233444444433 679999999999999
Q ss_pred HHHHHHHHHH
Q 028294 158 EAFIKTAAKI 167 (211)
Q Consensus 158 ~~~~~i~~~~ 167 (211)
++++.|.+..
T Consensus 156 ~L~~~L~~~~ 165 (614)
T PRK10512 156 ALREHLLQLP 165 (614)
T ss_pred HHHHHHHHhh
Confidence 9999887654
No 218
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.76 E-value=1.3e-17 Score=125.74 Aligned_cols=113 Identities=24% Similarity=0.321 Sum_probs=80.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------------CCCeeeEEEEEEEEE-----CCEEEEEEEEeCCCc
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------------DLTIGVEFGARMVTI-----DGRPIKLQIWDTAGQ 65 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~-----~~~~~~l~l~D~~G~ 65 (211)
+|+++|+.++|||||+++|+........ ....+.++....+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875443220 011223333222222 355688999999999
Q ss_pred cchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028294 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 124 (211)
..+......++..+|++|+|+|+.+..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence 9998888889999999999999987654432 233333322 368999999999975
No 219
>COG2262 HflX GTPases [General function prediction only]
Probab=99.75 E-value=7.7e-17 Score=127.80 Aligned_cols=162 Identities=22% Similarity=0.158 Sum_probs=121.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc---------hhhchHHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---------FRSITRSY 75 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------~~~~~~~~ 75 (211)
..+.|.++|..++|||||+|+|++.........+.+.+.....+.+.+ ...+.+.||.|.-+ |.+ +...
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks-TLEE 268 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS-TLEE 268 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH-HHHH
Confidence 457899999999999999999998776655555556666666677765 34577999999432 222 3334
Q ss_pred hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028294 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
...+|+++.|+|+++|....++......+........|+++|.||.|+..... ....... ..+ ..+.+||+++.|
T Consensus 269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-~~~~~~~---~~~-~~v~iSA~~~~g 343 (411)
T COG2262 269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-ILAELER---GSP-NPVFISAKTGEG 343 (411)
T ss_pred hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-hhhhhhh---cCC-CeEEEEeccCcC
Confidence 56899999999999998888888777777777666799999999999865433 1111111 122 589999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 028294 156 VEEAFIKTAAKILQNIQE 173 (211)
Q Consensus 156 i~~~~~~i~~~~~~~~~~ 173 (211)
++.+.+.|.+.+......
T Consensus 344 l~~L~~~i~~~l~~~~~~ 361 (411)
T COG2262 344 LDLLRERIIELLSGLRTE 361 (411)
T ss_pred HHHHHHHHHHHhhhcccc
Confidence 999999999888765543
No 220
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.75 E-value=6.2e-18 Score=128.01 Aligned_cols=148 Identities=20% Similarity=0.166 Sum_probs=94.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCCeeeEEEEEEEEECCEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMVTIDGRPIKLQ 58 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~l~ 58 (211)
+|+++|+.++|||||+.+|+...... ......+.+.......+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 58999999999999999996431100 0001124444444455555567789
Q ss_pred EEeCCCccchhhchHHHhccccEEEEEEECCCHHH------HHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC--CCCC
Q 028294 59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRET------FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR--RAVS 130 (211)
Q Consensus 59 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~ 130 (211)
+|||||+..+.......+..+|++|+|+|+.+... .......+...... ...|+++++||+|+... ....
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEccccccccccHHH
Confidence 99999998877777777889999999999988421 11112222222222 13689999999999632 1111
Q ss_pred ----HHHHHHHHHHc-----CCcEEEEeCCCCCCHH
Q 028294 131 ----KEEGEQFAKEN-----GLLFLEASARTAQNVE 157 (211)
Q Consensus 131 ----~~~~~~~~~~~-----~~~~~~~s~~~~~~i~ 157 (211)
.+++..+.... +++++++||++|.|++
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 12222233343 3569999999999987
No 221
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.74 E-value=7.5e-17 Score=123.59 Aligned_cols=156 Identities=19% Similarity=0.212 Sum_probs=116.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh----chHHH---hccc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----ITRSY---YRGA 79 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----~~~~~---~~~~ 79 (211)
..|.+||.|++|||||+++|...+--...+++++......++.+++.. ++.+-|.||.-.-.. +-..| +..+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhh
Confidence 457899999999999999999887666666665666666666666544 388999999432221 22223 4568
Q ss_pred cEEEEEEECCCH---HHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCC
Q 028294 80 AGALLVYDITRR---ETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTA 153 (211)
Q Consensus 80 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~ 153 (211)
+.++||+|++.+ ..|+.+..++.++..+.+ .+.|.+||+||+|+++.+ .....+++....-+ ++++||+.+
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccc
Confidence 899999999998 888888888887766554 789999999999996322 22245566655544 999999999
Q ss_pred CCHHHHHHHHHHH
Q 028294 154 QNVEEAFIKTAAK 166 (211)
Q Consensus 154 ~~i~~~~~~i~~~ 166 (211)
+++.++++.|.+.
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 353 EGLEELLNGLREL 365 (366)
T ss_pred cchHHHHHHHhhc
Confidence 9999998877653
No 222
>PRK12736 elongation factor Tu; Reviewed
Probab=99.73 E-value=1.2e-16 Score=130.69 Aligned_cols=146 Identities=18% Similarity=0.150 Sum_probs=98.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 70 (211)
..++|+++|+.++|||||+++|++..... ......|.+.......+......+.+|||||++.|..
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~ 90 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHH
Confidence 56899999999999999999998631100 0111335555555566655566789999999998887
Q ss_pred chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCCC---HHHHHHHHHHcC----
Q 028294 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS---KEEGEQFAKENG---- 142 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~---- 142 (211)
.....+..+|++++|+|+.+...-. ....+..+... +.| +++++||+|+.+..+.. .++...+....+
T Consensus 91 ~~~~~~~~~d~~llVvd~~~g~~~~-t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~ 166 (394)
T PRK12736 91 NMITGAAQMDGAILVVAATDGPMPQ-TREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGD 166 (394)
T ss_pred HHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcC
Confidence 7777788999999999998742211 12222333332 677 67889999986432211 123444444443
Q ss_pred -CcEEEEeCCCCC
Q 028294 143 -LLFLEASARTAQ 154 (211)
Q Consensus 143 -~~~~~~s~~~~~ 154 (211)
++++++|+++|.
T Consensus 167 ~~~ii~vSa~~g~ 179 (394)
T PRK12736 167 DIPVIRGSALKAL 179 (394)
T ss_pred CccEEEeeccccc
Confidence 579999999983
No 223
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.73 E-value=2.4e-16 Score=122.36 Aligned_cols=115 Identities=19% Similarity=0.204 Sum_probs=82.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCC--------------------CCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------------------LTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (211)
-+|+|+|++|+|||||+++|+......... ...+.++......++.....+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 369999999999999999998532111100 011344445555666667889999999999
Q ss_pred chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
.+.......++.+|++|+|+|+.+... .....++..... .+.|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh---cCCCEEEEEECCccCC
Confidence 888777788899999999999987532 222333333322 3789999999999854
No 224
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.73 E-value=3.2e-16 Score=116.79 Aligned_cols=159 Identities=13% Similarity=0.121 Sum_probs=94.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeee---EEEEEEEEECCEEEEEEEEeCCCccchhhchHHH-----hc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV---EFGARMVTIDGRPIKLQIWDTAGQESFRSITRSY-----YR 77 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~-----~~ 77 (211)
+++|+++|.+|+|||||+|+|++.........+.+. +.....+.... ...+.+||+||..........+ +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 478999999999999999999986553322222221 11111111111 2358899999975432222222 56
Q ss_pred cccEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCCCCC-----------CCHHHHHHHHH----Hc
Q 028294 78 GAAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHRRA-----------VSKEEGEQFAK----EN 141 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-----------~~~~~~~~~~~----~~ 141 (211)
.+|++++|.+. + +... ..|+..+... +.|+++|+||+|+..... ...++....+. ..
T Consensus 80 ~~d~~l~v~~~--~--~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST--R--FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC--C--CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence 78888887542 1 2222 2444555443 689999999999842111 01112222222 22
Q ss_pred C---CcEEEEeCC--CCCCHHHHHHHHHHHHHHHHh
Q 028294 142 G---LLFLEASAR--TAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 142 ~---~~~~~~s~~--~~~~i~~~~~~i~~~~~~~~~ 172 (211)
+ .+++.+|+. .+.++.++.+.|...+.+...
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 2 258999998 568888888888877765443
No 225
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.2e-16 Score=132.27 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=110.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc------hhhchHHHh--c
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES------FRSITRSYY--R 77 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~------~~~~~~~~~--~ 77 (211)
..+|+++|.||+|||||+|+|++......-.+-++++.........+ .++++.|.||-=. -.....+++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 45699999999999999999998877665555545555544444444 4478999999321 122334443 4
Q ss_pred cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028294 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 157 (211)
..|++|-|+|+++.+...++.- ++.+ -+.|++++.|+.|..+..-+. -+.+++.+..|+|+++++|++|.|++
T Consensus 81 ~~D~ivnVvDAtnLeRnLyltl---QLlE---~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~ 153 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLTL---QLLE---LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLE 153 (653)
T ss_pred CCCEEEEEcccchHHHHHHHHH---HHHH---cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHH
Confidence 6799999999988654222221 2222 389999999999986544332 44566777799999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQN 170 (211)
Q Consensus 158 ~~~~~i~~~~~~~ 170 (211)
++...+.+.....
T Consensus 154 ~l~~~i~~~~~~~ 166 (653)
T COG0370 154 ELKRAIIELAESK 166 (653)
T ss_pred HHHHHHHHhcccc
Confidence 9998887654333
No 226
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=4.6e-16 Score=120.08 Aligned_cols=159 Identities=21% Similarity=0.184 Sum_probs=112.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc-----c----hhhchHHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-----S----FRSITRSY 75 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~-----~----~~~~~~~~ 75 (211)
....|+|.|.|+||||||++.+...+.....+|+++-...+.++ +....+++++||||.- + -.....++
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhf--e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHF--ERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeee--ecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 46789999999999999999999988877777776666665544 4444568899999921 1 11122233
Q ss_pred hccccEEEEEEECCCH--HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCC
Q 028294 76 YRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASART 152 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ 152 (211)
-+-.++++|+||++.. .+.+.-..++..+.... +.|+++|.||.|..+... .++........+.. ...+++..
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~ 320 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEEK--LEEIEASVLEEGGEEPLKISATK 320 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchhH--HHHHHHHHHhhccccccceeeee
Confidence 3456789999999874 34455556777777776 589999999999865332 34444444444443 77888888
Q ss_pred CCCHHHHHHHHHHHHHH
Q 028294 153 AQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 153 ~~~i~~~~~~i~~~~~~ 169 (211)
+.+++.+-..+.....+
T Consensus 321 ~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 321 GCGLDKLREEVRKTALE 337 (346)
T ss_pred hhhHHHHHHHHHHHhhc
Confidence 88888887777666443
No 227
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.71 E-value=2.8e-16 Score=119.02 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=95.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC------------eeeEEEEEE--E----------------------EEC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT------------IGVEFGARM--V----------------------TID 51 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~------------~~~~~~~~~--~----------------------~~~ 51 (211)
||+++|+.++|||||+++|..+.+....... .|.+..... + .+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999976654321111 011110000 0 011
Q ss_pred CEEEEEEEEeCCCccchhhchHHHhc--cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028294 52 GRPIKLQIWDTAGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 52 ~~~~~l~l~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 129 (211)
.....+.+.|+||++.+.......+. .+|++++|+|+..... .....++..+.. .+.|+++++||+|+.+....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence 12346889999999988765555553 6899999999877543 222233333333 27899999999998543221
Q ss_pred C--HHHHHHHHH--------------------------HcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 130 S--KEEGEQFAK--------------------------ENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 130 ~--~~~~~~~~~--------------------------~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
. .++...... ...++++.+|+.+|.|++++...|.
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1 112222221 0124799999999999999876654
No 228
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.71 E-value=3.3e-16 Score=119.53 Aligned_cols=159 Identities=21% Similarity=0.194 Sum_probs=107.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc------------hhhch
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES------------FRSIT 72 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~------------~~~~~ 72 (211)
+.++|+|+|.|++|||||.|.+.+.+..+......+++....-+ +.....++.|+||||.-. +....
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 67899999999999999999999999988777665555555444 333456789999999321 11134
Q ss_pred HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC-------------CC---HHHHHH
Q 028294 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA-------------VS---KEEGEQ 136 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~-------------~~---~~~~~~ 136 (211)
...+..+|.+++|+|+++....... ..+..+..+. +.|-+++.||.|....+. +. .+-.++
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~ 226 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHP-RVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK 226 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence 4567789999999999973322211 2333444444 789999999999743321 11 111111
Q ss_pred HHHH---------cCC----cEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 137 FAKE---------NGL----LFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 137 ~~~~---------~~~----~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
+... .+. .+|.+||+.|+|++++-++|+...
T Consensus 227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 1111 112 289999999999999988776544
No 229
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.71 E-value=2.9e-16 Score=128.64 Aligned_cols=147 Identities=18% Similarity=0.158 Sum_probs=98.3
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCC------C------C--CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF------Q------P--VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~------~------~--~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~ 69 (211)
...++|+++|+.++|||||+++|++... . . ......|.+.....+.++..+..+.||||||++.|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 4678999999999999999999974310 0 0 011123555555556666666778999999999888
Q ss_pred hchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEE-EEEecCCCCCCCCCC---HHHHHHHHHHcC---
Q 028294 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVS---KEEGEQFAKENG--- 142 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 142 (211)
.........+|++++|+|+.+..... ....+..+... +.|.+ +++||+|+.+..... .++...++...+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQ-TREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPG 165 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 76766778899999999998742212 12222333322 66755 689999986532211 124555555544
Q ss_pred --CcEEEEeCCCCC
Q 028294 143 --LLFLEASARTAQ 154 (211)
Q Consensus 143 --~~~~~~s~~~~~ 154 (211)
++++++|+.++.
T Consensus 166 ~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 166 DDTPIIRGSALKAL 179 (394)
T ss_pred cCccEEECcccccc
Confidence 689999999874
No 230
>PRK12735 elongation factor Tu; Reviewed
Probab=99.71 E-value=4.3e-16 Score=127.55 Aligned_cols=147 Identities=17% Similarity=0.159 Sum_probs=97.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC-------CCC-----C--CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDK-------RFQ-----P--VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~-------~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 70 (211)
..++|+++|+.++|||||+++|++. .+. . ......|.+.......+.....++.|+||||++.|..
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~ 90 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVK 90 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHH
Confidence 5789999999999999999999862 100 0 0111235555555555655566789999999988877
Q ss_pred chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEE-EEEecCCCCCCCCCC---HHHHHHHHHHc-----
Q 028294 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVS---KEEGEQFAKEN----- 141 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~----- 141 (211)
.....+..+|++++|+|+.+.... .....+..+.. .+.|.+ +++||+|+.+..+.. .+++..+....
T Consensus 91 ~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~ 166 (396)
T PRK12735 91 NMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGD 166 (396)
T ss_pred HHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcC
Confidence 777778899999999999874321 12223333332 267765 579999996422211 12344455443
Q ss_pred CCcEEEEeCCCCCC
Q 028294 142 GLLFLEASARTAQN 155 (211)
Q Consensus 142 ~~~~~~~s~~~~~~ 155 (211)
+++++++|+.++.+
T Consensus 167 ~~~ii~~Sa~~g~n 180 (396)
T PRK12735 167 DTPIIRGSALKALE 180 (396)
T ss_pred ceeEEecchhcccc
Confidence 36799999999853
No 231
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.69 E-value=1.7e-16 Score=130.10 Aligned_cols=162 Identities=25% Similarity=0.330 Sum_probs=120.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|+.|+||||||-.|+...+.+..++-.. .+.+- ..+.-..+...++|++..+.-.......++.+|++.+
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~-~i~IP-advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLP-RILIP-ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCC-ccccC-CccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 578999999999999999999999988776544211 11100 2222233447899998776656666778899999999
Q ss_pred EEECCCHHHHHHHH-HHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHH-HHHHHHHcC-C-cEEEEeCCCCCCHHH
Q 028294 85 VYDITRRETFNHLS-SWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEE-GEQFAKENG-L-LFLEASARTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~~~~~~~-~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~-~~~~~s~~~~~~i~~ 158 (211)
||+.+++++++.+. .|+..+++... .++|+|+|+||.|..+....+.+. ...+..... + ..++|||++-.++.+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e 165 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE 165 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence 99999999999997 47777776653 789999999999998766554343 333333322 2 389999999999999
Q ss_pred HHHHHHHHHH
Q 028294 159 AFIKTAAKIL 168 (211)
Q Consensus 159 ~~~~i~~~~~ 168 (211)
+|....++++
T Consensus 166 ~fYyaqKaVi 175 (625)
T KOG1707|consen 166 LFYYAQKAVI 175 (625)
T ss_pred hhhhhhheee
Confidence 9988776654
No 232
>CHL00071 tufA elongation factor Tu
Probab=99.69 E-value=1.2e-15 Score=125.54 Aligned_cols=149 Identities=16% Similarity=0.118 Sum_probs=100.3
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCC--------------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP--------------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~ 69 (211)
...++|+++|++++|||||+++|++..... ......|.+.......+.....++.|.||||+..+.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 357899999999999999999999642210 011123555555555565556678899999998888
Q ss_pred hchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCCC---HHHHHHHHHHcC---
Q 028294 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS---KEEGEQFAKENG--- 142 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~--- 142 (211)
......+..+|++++|+|+..... ......+..+... +.| +++++||+|+.+..+.. .+++..+....+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~ 165 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG 165 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 877788889999999999986432 2222233333322 677 77889999996532211 123444444433
Q ss_pred --CcEEEEeCCCCCCH
Q 028294 143 --LLFLEASARTAQNV 156 (211)
Q Consensus 143 --~~~~~~s~~~~~~i 156 (211)
++++++|+.+|.++
T Consensus 166 ~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 166 DDIPIVSGSALLALEA 181 (409)
T ss_pred CcceEEEcchhhcccc
Confidence 67999999998743
No 233
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.69 E-value=5.8e-16 Score=116.85 Aligned_cols=113 Identities=20% Similarity=0.201 Sum_probs=78.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCC--------------CCeeeEEEE--EEEEEC--------CEEEEEEEEeCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------------LTIGVEFGA--RMVTID--------GRPIKLQIWDTA 63 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~--------------~~~~~~~~~--~~~~~~--------~~~~~l~l~D~~ 63 (211)
+|+++|+.++|||||+.+|+......... ...+.+... ....++ +....+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 68999999999999999998543211100 011222221 122233 347789999999
Q ss_pred CccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028294 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 124 (211)
|+..+......++..+|++|+|+|+.+.........+ ..... .+.|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCCcc
Confidence 9999999999999999999999999986544332222 22222 368999999999975
No 234
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=1.5e-16 Score=124.12 Aligned_cols=115 Identities=21% Similarity=0.236 Sum_probs=78.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-----C-----------eeeEEEEEEEEECCEEEEEEEEeCCCccchhhc
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----T-----------IGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~ 71 (211)
+|+++|++|+|||||+++|+.......... + .+.+.......+......+.+|||||...+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 589999999999999999985432211100 0 012222222233333467889999999888888
Q ss_pred hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028294 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 126 (211)
+..++..+|++++|+|+++.........| ..+.. .+.|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCC
Confidence 88899999999999999886544332222 23322 37899999999998653
No 235
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.69 E-value=3.3e-16 Score=121.68 Aligned_cols=114 Identities=18% Similarity=0.133 Sum_probs=80.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCC----------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPV----------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~ 71 (211)
+|+++|++++|||||+++|+....... .....+.+.......+.....++.+|||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999974221110 0112244444444444445677899999999888888
Q ss_pred hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
+...++.+|++|+|+|+.+...-. ....+..+.. .+.|+++++||+|+.+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 899999999999999998753222 2233333332 3789999999999864
No 236
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.68 E-value=6.4e-16 Score=120.54 Aligned_cols=143 Identities=17% Similarity=0.260 Sum_probs=92.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh----
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---- 70 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---- 70 (211)
..++|+|+|.+|+|||||+|+|++..+... ..++.+.+.....+..++..+.+.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998876543 233444555555566678888999999999432211
Q ss_pred ----------------------chHHHhc--cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028294 71 ----------------------ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 71 ----------------------~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 126 (211)
.....+. .+|+++++++..... +.... +..+..... +.|+++|+||+|+...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D--~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLD--IEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHH--HHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 0101222 366778888766421 11110 222333332 6899999999998542
Q ss_pred CC--CCHHHHHHHHHHcCCcEEEEeCC
Q 028294 127 RA--VSKEEGEQFAKENGLLFLEASAR 151 (211)
Q Consensus 127 ~~--~~~~~~~~~~~~~~~~~~~~s~~ 151 (211)
.+ ...+.+.+.+..++++++.....
T Consensus 159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 159 EELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred HHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 22 23445666777789998877653
No 237
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.68 E-value=2.2e-15 Score=126.80 Aligned_cols=116 Identities=20% Similarity=0.182 Sum_probs=82.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G 64 (211)
..-+|+|+|+.++|||||+++|+....... .....+.++......++.....+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456999999999999999999974211100 001124444444455555567899999999
Q ss_pred ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028294 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 124 (211)
+..+......++..+|++|+|+|+.+.... ....++..... .+.|+++++||+|+.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~---~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL---RDTPIFTFINKLDRD 144 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh---cCCCEEEEEECCccc
Confidence 998888778889999999999999875322 23333333322 489999999999974
No 238
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.67 E-value=1.1e-15 Score=125.41 Aligned_cols=150 Identities=20% Similarity=0.173 Sum_probs=96.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCC-------------------------------CCCeeeEEEEEEEEECCEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVH-------------------------------DLTIGVEFGARMVTIDGRPI 55 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 55 (211)
++|+++|+.++|||||+.+|+...-.... ....+.+.......+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999743211100 00113334444444444556
Q ss_pred EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCH----
Q 028294 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK---- 131 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---- 131 (211)
++.||||||++.|.......+..+|++|+|+|+.....-+.. ..+..+.... ..++++++||+|+.+......
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~-~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR-RHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH-HHHHHHHHcC--CCcEEEEEEecccccchHHHHHHHH
Confidence 789999999998887777788999999999999765322111 1122222221 346889999999864322111
Q ss_pred HHHHHHHHHcC---CcEEEEeCCCCCCHHHH
Q 028294 132 EEGEQFAKENG---LLFLEASARTAQNVEEA 159 (211)
Q Consensus 132 ~~~~~~~~~~~---~~~~~~s~~~~~~i~~~ 159 (211)
++...+....+ ++++++||++|.|+++.
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~ 188 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVSR 188 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence 22223333333 46999999999998863
No 239
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=1.6e-15 Score=123.63 Aligned_cols=162 Identities=22% Similarity=0.242 Sum_probs=118.6
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-------------CCCCeeeEEEEEEEEE---CCEEEEEEEEeCCCc
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-------------HDLTIGVEFGARMVTI---DGRPIKLQIWDTAGQ 65 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~---~~~~~~l~l~D~~G~ 65 (211)
+.++.-++.|+-+-.-|||||..+|+....... ...-.|+++...+..+ ++..+.++++||||+
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 345667899999999999999999985432111 1112255555555443 456689999999999
Q ss_pred cchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC-HHHHHHHHHHcCCc
Q 028294 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-KEEGEQFAKENGLL 144 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~ 144 (211)
-.|.......+..+|++|+|+|+++....+.+..++..+. .+..+|.|+||+|++..+.-. ..+........+.+
T Consensus 136 vDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~ 211 (650)
T KOG0462|consen 136 VDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE 211 (650)
T ss_pred ccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999999999766555555554444 378899999999997644211 22344444445667
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Q 028294 145 FLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 145 ~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
++.+||++|.++.++++.|++.+
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rV 234 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRV 234 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhC
Confidence 99999999999999877776655
No 240
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=9.3e-15 Score=119.53 Aligned_cols=178 Identities=19% Similarity=0.171 Sum_probs=122.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC-EEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
..+-|.++|+..-|||||+..+-..........-.+..+....+..+. ..-.+.|.||||++.|..++..=..-+|.+|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 456799999999999999999998777665555445555555555441 2335789999999999999888888999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC---------CcEEEEeCCCCC
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG---------LLFLEASARTAQ 154 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~ 154 (211)
+|++++|.-- .+..+.+......+.|++|++||+|.++.. ......-..+++ ..++++||++|.
T Consensus 84 LVVa~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 84 LVVAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 9999998432 223334444455699999999999997432 222222222222 348999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhccccccCCCCCeEEeecc
Q 028294 155 NVEEAFIKTAAKILQNIQEGALDAVNDQSGIKVGYGR 191 (211)
Q Consensus 155 ~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (211)
|++++++.+.-..... +-.......-.+..+..+-
T Consensus 157 Gi~eLL~~ill~aev~--elka~~~~~a~gtviE~~~ 191 (509)
T COG0532 157 GIDELLELILLLAEVL--ELKANPEGPARGTVIEVKL 191 (509)
T ss_pred CHHHHHHHHHHHHHHH--hhhcCCCCcceEEEEEEEe
Confidence 9999998765433332 3333344444454444333
No 241
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.66 E-value=1.6e-15 Score=126.51 Aligned_cols=154 Identities=19% Similarity=0.140 Sum_probs=98.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC------------C-------------------CCeeeEEEEEEEEECC
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------------D-------------------LTIGVEFGARMVTIDG 52 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~------------~-------------------~~~~~~~~~~~~~~~~ 52 (211)
...++|+++|+.++|||||+.+|+...-.... . ...|.+.......+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 45689999999999999999999854321110 0 0113333444344555
Q ss_pred EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028294 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 132 (211)
Q Consensus 53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 132 (211)
...++.||||||++.+.......+..+|++++|+|+.....-.....+ ..+.... ..|+++++||+|+.+......+
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~lg--~~~iIvvvNKiD~~~~~~~~~~ 181 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLLG--IKHLVVAVNKMDLVDYSEEVFE 181 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHhC--CCceEEEEEeeccccchhHHHH
Confidence 556789999999988876666667999999999999764321111111 1122221 3578999999998643221122
Q ss_pred HH----HHHHHHc----CCcEEEEeCCCCCCHHHHH
Q 028294 133 EG----EQFAKEN----GLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 133 ~~----~~~~~~~----~~~~~~~s~~~~~~i~~~~ 160 (211)
+. ..+.... ..+++++|+++|.|+++.-
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 22 2222222 3679999999999998753
No 242
>PRK13351 elongation factor G; Reviewed
Probab=99.66 E-value=3.1e-15 Score=130.55 Aligned_cols=119 Identities=17% Similarity=0.166 Sum_probs=84.4
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-------------CC---CCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-------------HD---LTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (211)
.+...+|+|+|+.++|||||+++|+....... .. ...+.+.......+......+.+|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 34567999999999999999999985321100 00 011233333333444456788999999999
Q ss_pred chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
.+...+..+++.+|++|+|+|+++.........| ..+.. .+.|+++++||+|+..
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 9988899999999999999999887655544333 33332 3789999999999853
No 243
>PLN03126 Elongation factor Tu; Provisional
Probab=99.65 E-value=5.3e-15 Score=123.05 Aligned_cols=147 Identities=16% Similarity=0.102 Sum_probs=99.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCC------CC--------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF------QP--------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 70 (211)
..++|+++|+.++|||||+++|+.... .. ......+.+.......++.....+.|+|+||++.|..
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~ 159 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 159 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHH
Confidence 468999999999999999999985211 11 1112235555554455554556789999999999988
Q ss_pred chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCCC---HHHHHHHHHHc-----
Q 028294 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVS---KEEGEQFAKEN----- 141 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~----- 141 (211)
.....+..+|++++|+|+.+....+ ...++..+... ++| +++++||+|+.+..+.. .+++..+....
T Consensus 160 ~~~~g~~~aD~ailVVda~~G~~~q-t~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~ 235 (478)
T PLN03126 160 NMITGAAQMDGAILVVSGADGPMPQ-TKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGD 235 (478)
T ss_pred HHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 8888888999999999998753322 23333333332 677 77899999986532211 12334444443
Q ss_pred CCcEEEEeCCCCCC
Q 028294 142 GLLFLEASARTAQN 155 (211)
Q Consensus 142 ~~~~~~~s~~~~~~ 155 (211)
+++++++|+.++.+
T Consensus 236 ~~~~vp~Sa~~g~n 249 (478)
T PLN03126 236 DIPIISGSALLALE 249 (478)
T ss_pred cceEEEEEcccccc
Confidence 46799999998854
No 244
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.65 E-value=5e-15 Score=122.61 Aligned_cols=150 Identities=18% Similarity=0.161 Sum_probs=104.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-----------------------------CCCCCeeeEEEEEEEEECCEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------------------VHDLTIGVEFGARMVTIDGRPI 55 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~ 55 (211)
..++|+++|+.++|||||+-+|+...... ......+.+.......+.....
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 46889999999999999999987421100 0111235566666666777777
Q ss_pred EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHH-------HHHHHHHHHHHhcCCCC-eEEEEEecCCCCCCC
Q 028294 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN-------HLSSWLEDARQHANPNM-SIMLVGNKCDLAHRR 127 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~-p~ivv~nK~Dl~~~~ 127 (211)
.+.++|+||++.|.......+..+|++|+|+|+.+. .++ .....+..... .+. +++|++||+|+.+..
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~---~gi~~iIV~vNKmD~~~~~ 161 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT---LGVKQMICCCNKMDATTPK 161 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH---cCCCcEEEEEEcccCCchh
Confidence 899999999999999999999999999999999873 121 22222222222 256 478889999985211
Q ss_pred --C----CCHHHHHHHHHHcC-----CcEEEEeCCCCCCHHH
Q 028294 128 --A----VSKEEGEQFAKENG-----LLFLEASARTAQNVEE 158 (211)
Q Consensus 128 --~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~ 158 (211)
. ...+++..++...+ ++++++|+++|+|+.+
T Consensus 162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 0 11345566666655 5699999999999864
No 245
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.65 E-value=1.4e-14 Score=111.71 Aligned_cols=154 Identities=23% Similarity=0.166 Sum_probs=110.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch-------hhchHHHhc
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-------RSITRSYYR 77 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~~ 77 (211)
-..+++++|+|++|||||++.|++........++++.+.....+.+++ .++++.|+||.-.- ........+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 346899999999999999999999888777777767777776666665 45789999983221 234566789
Q ss_pred cccEEEEEEECCCHHH-HHHHHHHHH-----------------------------------------HHHHh--------
Q 028294 78 GAAGALLVYDITRRET-FNHLSSWLE-----------------------------------------DARQH-------- 107 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~-~~~~~~~~~-----------------------------------------~~~~~-------- 107 (211)
++|++|+|+|+..... .+.+...+. .+.++
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999986543 333333222 00000
Q ss_pred ----------------cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 108 ----------------ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 108 ----------------~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
...-+|.+++.||.|+.. .++...+.+.. ..+++||..+.|++++.+.|.+.+
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 011479999999999854 34455554434 789999999999999988777665
No 246
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.65 E-value=6.2e-15 Score=109.80 Aligned_cols=159 Identities=17% Similarity=0.161 Sum_probs=96.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh--------c---hH
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------I---TR 73 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~---~~ 73 (211)
++|+++|.+|+|||||+|+|++........ +..+.........+++ ..+.++||||...... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 479999999999999999999886544332 2223333333334444 4688999999543321 1 11
Q ss_pred HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCC------CHHHHHHHHHHcCCcE
Q 028294 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAV------SKEEGEQFAKENGLLF 145 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~ 145 (211)
......|++|+|+++.+ .+.. ....+..+..... .-.++++++|+.|......+ ...........++..+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 22367899999999877 2221 2233444444332 12578888999986543211 1133455555666666
Q ss_pred EEEeCC-----CCCCHHHHHHHHHHHHHH
Q 028294 146 LEASAR-----TAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 146 ~~~s~~-----~~~~i~~~~~~i~~~~~~ 169 (211)
+..+.+ .+.++.++++.|.+.+.+
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 655543 456777777777666654
No 247
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=2.3e-15 Score=113.71 Aligned_cols=159 Identities=20% Similarity=0.279 Sum_probs=107.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEE-EECCEEEEEEEEeCCCccc-------hhhchHHHh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMV-TIDGRPIKLQIWDTAGQES-------FRSITRSYY 76 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~ 76 (211)
.+++|+++|..|+|||||+|+|+.+...+...-..+.+.....+ .+++ -.+.|||+||.+. +.++...++
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 56899999999999999999999766555443333333333222 2333 3478999999554 777888999
Q ss_pred ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC-------CCCCHHHHHH-----------HH
Q 028294 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-------RAVSKEEGEQ-----------FA 138 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~-----------~~ 138 (211)
...|.++++++..|+.---... ++..+.... .+.++++++|.+|...+ ...+...+++ ++
T Consensus 116 ~~~DLvL~l~~~~draL~~d~~-f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDED-FLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred hhccEEEEeccCCCccccCCHH-HHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875333333 333333332 25899999999997433 1111111122 22
Q ss_pred HHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 139 KENGLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 139 ~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
++ -.|++.++.+.+.|++++...+++.+.
T Consensus 194 q~-V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 194 QE-VKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred hh-cCCeEEeccccCccHHHHHHHHHHhCc
Confidence 11 236888889999999999998888775
No 248
>PRK00049 elongation factor Tu; Reviewed
Probab=99.65 E-value=8.5e-15 Score=119.91 Aligned_cols=146 Identities=17% Similarity=0.163 Sum_probs=97.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCC---C-----------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ---P-----------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 70 (211)
..++|+++|+.++|||||+++|++.... . ......|.+.......+.....++.+.||||+..+..
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~ 90 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVK 90 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHH
Confidence 6789999999999999999999863110 0 0111335555555566655566788999999988877
Q ss_pred chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEE-EEEecCCCCCCCCCC---HHHHHHHHHHc-----
Q 028294 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIM-LVGNKCDLAHRRAVS---KEEGEQFAKEN----- 141 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~i-vv~nK~Dl~~~~~~~---~~~~~~~~~~~----- 141 (211)
.....+..+|++++|+|+.+... ......+..+... +.|.+ +++||+|+.+..... ..+...+....
T Consensus 91 ~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (396)
T PRK00049 91 NMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGD 166 (396)
T ss_pred HHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCcc
Confidence 77777899999999999987532 2222333333332 67876 589999996422211 12333344332
Q ss_pred CCcEEEEeCCCCC
Q 028294 142 GLLFLEASARTAQ 154 (211)
Q Consensus 142 ~~~~~~~s~~~~~ 154 (211)
+++++++|++++.
T Consensus 167 ~~~iv~iSa~~g~ 179 (396)
T PRK00049 167 DTPIIRGSALKAL 179 (396)
T ss_pred CCcEEEeeccccc
Confidence 3679999999875
No 249
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.64 E-value=6.6e-15 Score=114.23 Aligned_cols=164 Identities=17% Similarity=0.128 Sum_probs=112.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh----chHHHh---ccc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----ITRSYY---RGA 79 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----~~~~~~---~~~ 79 (211)
.-|.+||.|++|||||++.+...+--...+++++.....-.+.++ ....+.+-|.||.-+-.+ +-..|+ ..+
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 347899999999999999999887665555555655555555552 233577899999443222 333343 456
Q ss_pred cEEEEEEECCCHH---HHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCC
Q 028294 80 AGALLVYDITRRE---TFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTA 153 (211)
Q Consensus 80 d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~ 153 (211)
.++++|+|++..+ ..++......++..+.. .++|.+||+||+|+....+...+....+.+..+.. ++.+|+.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 7999999998644 35666666667666543 68999999999997544333223333444444443 222999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 028294 154 QNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 154 ~~i~~~~~~i~~~~~~~~ 171 (211)
.|++++...+.+.+.+..
T Consensus 319 ~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 319 EGLDELLRALAELLEETK 336 (369)
T ss_pred cCHHHHHHHHHHHHHHhh
Confidence 999999999888887775
No 250
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.64 E-value=9.7e-15 Score=115.62 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=54.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEE---------------------ECC-EEEEEEEEeCCCc-
Q 028294 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT---------------------IDG-RPIKLQIWDTAGQ- 65 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~l~l~D~~G~- 65 (211)
|+++|.+++|||||+|+|++........+..+.+....... .++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998875432223222222221111 122 3367999999997
Q ss_pred ---cchhhchHH---HhccccEEEEEEECC
Q 028294 66 ---ESFRSITRS---YYRGAAGALLVYDIT 89 (211)
Q Consensus 66 ---~~~~~~~~~---~~~~~d~~i~v~d~~ 89 (211)
+....+... .++.+|++++|+|+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 334444334 489999999999996
No 251
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.63 E-value=1.7e-14 Score=98.42 Aligned_cols=106 Identities=21% Similarity=0.164 Sum_probs=69.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch---------hhchHHHhc
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF---------RSITRSYYR 77 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~---------~~~~~~~~~ 77 (211)
+|+|+|.+|+|||||+|+|++..... ...+..+.......+.+++..+ .++||||.... .......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 68999999999999999999864322 2222223333334455666664 69999995321 112333448
Q ss_pred cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEec
Q 028294 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNK 120 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK 120 (211)
.+|++++|+|..++.. .....++..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 9999999999877422 22333334442 48999999998
No 252
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.62 E-value=1e-14 Score=120.79 Aligned_cols=151 Identities=19% Similarity=0.141 Sum_probs=101.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCC--CC---------------------------CCCCCeeeEEEEEEEEECCEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF--QP---------------------------VHDLTIGVEFGARMVTIDGRPI 55 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 55 (211)
..++|+++|+.++|||||+.+|+...- .. ......+.+.......++....
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 568999999999999999999975211 00 0011225555555566666777
Q ss_pred EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCe-EEEEEecCCCCC--C
Q 028294 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLSSWLEDARQHANPNMS-IMLVGNKCDLAH--R 126 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~--~ 126 (211)
.+.|+|+||+.+|.......+..+|++|+|+|+.+..- + ......+..+... ++| ++|++||+|... .
T Consensus 86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccccchh
Confidence 89999999999998888888999999999999987420 0 1222222233322 655 678999999532 1
Q ss_pred CCCC----HHHHHHHHHHc-----CCcEEEEeCCCCCCHHH
Q 028294 127 RAVS----KEEGEQFAKEN-----GLLFLEASARTAQNVEE 158 (211)
Q Consensus 127 ~~~~----~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~ 158 (211)
.+.. .+++..+.... +++++++|+.+|+|+.+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1111 12333333332 35799999999999864
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.62 E-value=1.1e-14 Score=125.94 Aligned_cols=152 Identities=20% Similarity=0.156 Sum_probs=96.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC------------CC-------------------CeeeEEEEEEEEECC
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH------------DL-------------------TIGVEFGARMVTIDG 52 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~------------~~-------------------~~~~~~~~~~~~~~~ 52 (211)
...++|+++|++++|||||+++|+...-.... .. ..|.+.......+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 35689999999999999999999864321110 00 012333333334444
Q ss_pred EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028294 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 132 (211)
Q Consensus 53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 132 (211)
...++.|+||||++.+.......+..+|++++|+|+.+...-+. ...+..+.... ..|++|++||+|+.+......+
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~~--~~~iivvvNK~D~~~~~~~~~~ 178 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLLG--IRHVVLAVNKMDLVDYDQEVFD 178 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHhC--CCeEEEEEEecccccchhHHHH
Confidence 45567899999998887666667889999999999976532111 11122222221 3678899999998642211112
Q ss_pred ----HHHHHHHHcC---CcEEEEeCCCCCCHHH
Q 028294 133 ----EGEQFAKENG---LLFLEASARTAQNVEE 158 (211)
Q Consensus 133 ----~~~~~~~~~~---~~~~~~s~~~~~~i~~ 158 (211)
+...+....+ .+++++||++|.|+.+
T Consensus 179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 2223333444 4599999999999885
No 254
>PLN03127 Elongation factor Tu; Provisional
Probab=99.62 E-value=2.3e-14 Score=118.56 Aligned_cols=143 Identities=15% Similarity=0.115 Sum_probs=92.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC------CCC----C----CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDK------RFQ----P----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~------~~~----~----~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 70 (211)
..++|+++|+.++|||||+++|.+. ... . ......|.+.......++....++.|.||||+..+..
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~~ 139 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYVK 139 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchHH
Confidence 5689999999999999999999732 100 0 0111235556666666666667889999999998877
Q ss_pred chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCCCH---HHHHHHHHHc-----
Q 028294 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVSK---EEGEQFAKEN----- 141 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~---~~~~~~~~~~----- 141 (211)
.....+..+|++++|+|+.+...-+ ....+..+.. .+.| +++++||+|+.+...... ++...+....
T Consensus 140 ~~~~g~~~aD~allVVda~~g~~~q-t~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~ 215 (447)
T PLN03127 140 NMITGAAQMDGGILVVSAPDGPMPQ-TKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGD 215 (447)
T ss_pred HHHHHHhhCCEEEEEEECCCCCchh-HHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7777777899999999997753211 2222223322 2678 578899999964322111 1222333322
Q ss_pred CCcEEEEeCC
Q 028294 142 GLLFLEASAR 151 (211)
Q Consensus 142 ~~~~~~~s~~ 151 (211)
.++++++|+.
T Consensus 216 ~vpiip~Sa~ 225 (447)
T PLN03127 216 EIPIIRGSAL 225 (447)
T ss_pred cceEEEeccc
Confidence 3578888876
No 255
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.61 E-value=1.6e-15 Score=109.89 Aligned_cols=116 Identities=21% Similarity=0.333 Sum_probs=72.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEE-CCEEEEEEEEeCCCccchhhchHHH---hccccE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTI-DGRPIKLQIWDTAGQESFRSITRSY---YRGAAG 81 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~~~~~---~~~~d~ 81 (211)
.-.|+++|+.|+|||+|+.+|..+...++.... ..... ..+ +.....+.++|+||+++.+...... ...+.+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~---~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA---YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE---CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce---EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 457999999999999999999998655544333 22221 112 2233457899999999888754444 788999
Q ss_pred EEEEEECCC-HHHHHHHHHHHHHHHHh---cCCCCeEEEEEecCCCCC
Q 028294 82 ALLVYDITR-RETFNHLSSWLEDARQH---ANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 82 ~i~v~d~~~-~~~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~Dl~~ 125 (211)
+|||+|.+. +.....+..++..+... .....|++|+.||.|+..
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 999999975 44455555544443222 236899999999999854
No 256
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=6.8e-14 Score=114.33 Aligned_cols=153 Identities=20% Similarity=0.148 Sum_probs=112.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
.++-|-|+|+..-|||||+..|-..........-++..+..-.+.++. .-.+.|.||||+..|..++..-..-+|.+++
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-GKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-CCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 567789999999999999999997776554444334444444455553 3568899999999999999888899999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-------cC--CcEEEEeCCCCCC
Q 028294 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-------NG--LLFLEASARTAQN 155 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~--~~~~~~s~~~~~~ 155 (211)
|+.++|.-- .+..+.|......+.|++|++||+|.++.. .+...+-... +| +.++++||++|.|
T Consensus 231 VVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 231 VVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 999988532 233444555555699999999999987532 3333333333 23 3489999999999
Q ss_pred HHHHHHHHHH
Q 028294 156 VEEAFIKTAA 165 (211)
Q Consensus 156 i~~~~~~i~~ 165 (211)
++.+-+.+.-
T Consensus 304 l~~L~eaill 313 (683)
T KOG1145|consen 304 LDLLEEAILL 313 (683)
T ss_pred hHHHHHHHHH
Confidence 9998877553
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.59 E-value=2e-14 Score=118.91 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=101.3
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCeeeEEEEEEE-----------------EECC-------------
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMV-----------------TIDG------------- 52 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~-----------------~~~~------------- 52 (211)
.-.++|.++|+...|||||+.+|.+....... ....|.+...... .+..
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 45689999999999999999999964321100 0000111100000 0000
Q ss_pred ---EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028294 53 ---RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 53 ---~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 129 (211)
....+.|+|+||++.|.......+..+|++++|+|+.++.........+..+.... -.|++|++||+|+.+....
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~~~~ 189 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKEAQA 189 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCHHHH
Confidence 02367899999999998887888889999999999987421111122222222221 3468999999998642211
Q ss_pred --CHHHHHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 130 --SKEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 130 --~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
..+++..+... .+.+++++||++|.|++.+++.|.+.+
T Consensus 190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 11223333322 356899999999999999888877644
No 258
>PRK12739 elongation factor G; Reviewed
Probab=99.59 E-value=4.6e-14 Score=123.07 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=81.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----CC-----------CCeeeEEEEEEEEECCEEEEEEEEeCCCccc
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----HD-----------LTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 67 (211)
+...+|+|+|+.++|||||+++|+....... .. ...+.+.......+.....++.++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 4567999999999999999999975321100 00 1123333333333333456788999999988
Q ss_pred hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
+...+...+..+|++|+|+|+.+....... ..+..+.. .+.|.++++||+|+..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 888888899999999999999876432222 23333332 3789999999999863
No 259
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.58 E-value=4.7e-14 Score=123.03 Aligned_cols=117 Identities=19% Similarity=0.120 Sum_probs=82.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-----CCC-----------CCeeeEEEEEEEEECCEEEEEEEEeCCCccch
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----VHD-----------LTIGVEFGARMVTIDGRPIKLQIWDTAGQESF 68 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~ 68 (211)
..-+|+|+|+.++|||||+++|+...... ... ...+.+.......+...+.++.+|||||+..+
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 34599999999999999999997432211 000 01233444333444444567899999999988
Q ss_pred hhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 69 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
.......++.+|++|+|+|+.+....... .++..+.. .+.|+++++||+|+..
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 88888999999999999999885443332 23333332 3789999999999865
No 260
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.58 E-value=4.7e-14 Score=118.82 Aligned_cols=118 Identities=19% Similarity=0.187 Sum_probs=84.1
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCeeeEEEEEEEEECCEEEEEEEEeCC
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTA 63 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~ 63 (211)
....+|+|+|+.++|||||+++|+....... .....+.++......++.....+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 3567999999999999999999863211110 00122455555556666667889999999
Q ss_pred CccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
|+..+.......+..+|++|+|+|+.+... .....++..... .+.|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence 998888777778899999999999987421 223334433322 3789999999999853
No 261
>PRK09866 hypothetical protein; Provisional
Probab=99.57 E-value=3.2e-13 Score=113.42 Aligned_cols=108 Identities=16% Similarity=0.156 Sum_probs=72.0
Q ss_pred EEEEEeCCCccch-----hhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC
Q 028294 56 KLQIWDTAGQESF-----RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 130 (211)
Q Consensus 56 ~l~l~D~~G~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 130 (211)
++.|+||||.... .......+..+|+++||+|.....+... ......+.... .+.|+++|+||+|+.+.....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-QSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-CCCCEEEEEEcccCCCcccch
Confidence 5779999996432 2234457899999999999987433222 22333343322 135999999999986433333
Q ss_pred HHHHHHHHH----HcC---CcEEEEeCCCCCCHHHHHHHHHH
Q 028294 131 KEEGEQFAK----ENG---LLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 131 ~~~~~~~~~----~~~---~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
.+....+.. ..+ ..++++||+.|.|++++++.|.+
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 444444432 112 35999999999999999988876
No 262
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.9e-14 Score=116.27 Aligned_cols=166 Identities=22% Similarity=0.209 Sum_probs=107.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-hhh--------chHHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRS--------ITRSY 75 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~--------~~~~~ 75 (211)
..++|+|+|+|++|||||+|.|.........+.+ |++.......++-..+.+.|.||+|..+ ... .....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~-GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVP-GTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCC-CcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 4589999999999999999999988776554444 5555555555544556678999999554 111 23345
Q ss_pred hccccEEEEEEECC--CHHHHHHHHHHHHHHHHhcC------CCCeEEEEEecCCCCCC-CCCCHHHHHHHHHHc---CC
Q 028294 76 YRGAAGALLVYDIT--RRETFNHLSSWLEDARQHAN------PNMSIMLVGNKCDLAHR-RAVSKEEGEQFAKEN---GL 143 (211)
Q Consensus 76 ~~~~d~~i~v~d~~--~~~~~~~~~~~~~~~~~~~~------~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~---~~ 143 (211)
+..+|++++|+|+. +-++...+...+........ .+.|++++.||.|+... .++...- ..+.... ..
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-VVYPSAEGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-eeccccccCccc
Confidence 67899999999993 33332333333333322211 24889999999999654 2222111 1111111 22
Q ss_pred c-EEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028294 144 L-FLEASARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 144 ~-~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 172 (211)
+ ..++|+++++|++.+.+.+...+.....
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 3 4559999999999999888877765554
No 263
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.56 E-value=2.2e-14 Score=95.58 Aligned_cols=136 Identities=21% Similarity=0.198 Sum_probs=95.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc----cchhhchHHHhccccEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----ESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~----~~~~~~~~~~~~~~d~~i 83 (211)
|++++|+.|+|||||.+.|.+.... +..+.. ++++... ..||||. ..+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKTQA-------ve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKTQA-------VEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh--hcccce-------eeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 7899999999999999999876532 223322 2232222 4699993 233333445567899999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~ 162 (211)
+|-+++++++. +-..+.... ..|+|=+++|.|+++.. ..+..+++..+-|. ++|.+|+.++.|+++++..
T Consensus 70 ~v~~and~~s~-----f~p~f~~~~--~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~ 140 (148)
T COG4917 70 YVHAANDPESR-----FPPGFLDIG--VKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY 140 (148)
T ss_pred eeecccCcccc-----CCccccccc--ccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence 99999998651 112222222 56699999999997633 34667788888886 5999999999999999887
Q ss_pred HHH
Q 028294 163 TAA 165 (211)
Q Consensus 163 i~~ 165 (211)
|..
T Consensus 141 L~~ 143 (148)
T COG4917 141 LAS 143 (148)
T ss_pred HHh
Confidence 754
No 264
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=2.2e-13 Score=109.79 Aligned_cols=159 Identities=23% Similarity=0.255 Sum_probs=115.3
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-------------CCCCeeeEEEEEEEEE-----CCEEEEEEEEeCCC
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-------------HDLTIGVEFGARMVTI-----DGRPIKLQIWDTAG 64 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~-----~~~~~~l~l~D~~G 64 (211)
.++.-+..++-+-.-|||||..||+.....-. ...-.|+++....+.+ ++..+.++++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 34555788899999999999999974322110 1111244444433332 55778999999999
Q ss_pred ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc
Q 028294 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 144 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 144 (211)
+-.|.......+..+.+.++|+|+++.-..+.+...+..+.. +.-++-|+||.||+..... .-..++..-.|++
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adpe--rvk~eIe~~iGid 159 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADPE--RVKQEIEDIIGID 159 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCHH--HHHHHHHHHhCCC
Confidence 999999888889999999999999998766667666665543 7889999999999764321 1222233335654
Q ss_pred ---EEEEeCCCCCCHHHHHHHHHHHH
Q 028294 145 ---FLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 145 ---~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
.+.+||++|.||+++++.|++.+
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~i 185 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKI 185 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhC
Confidence 89999999999999988887776
No 265
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.54 E-value=4.4e-13 Score=109.28 Aligned_cols=83 Identities=22% Similarity=0.247 Sum_probs=56.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEE---------------------EC-CEEEEEEEEeCCC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVT---------------------ID-GRPIKLQIWDTAG 64 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~l~l~D~~G 64 (211)
++|+++|.+++|||||+|+|++........+..+.+....... .+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999998876543333333222222211 11 1236789999999
Q ss_pred cc----chhhchHHH---hccccEEEEEEECC
Q 028294 65 QE----SFRSITRSY---YRGAAGALLVYDIT 89 (211)
Q Consensus 65 ~~----~~~~~~~~~---~~~~d~~i~v~d~~ 89 (211)
.. ....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 42 233333344 88999999999996
No 266
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1e-13 Score=110.20 Aligned_cols=155 Identities=19% Similarity=0.167 Sum_probs=107.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCeeeEEEEEEEEECCEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMVTIDGRP 54 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 54 (211)
...++++++|+..+|||||+=+|+...-... ...-.|.++......++...
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 4678999999999999999999864321100 01123777777778888778
Q ss_pred EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHH---H---HHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028294 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---F---NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 128 (211)
..+.|.|+||+..|-.....-+.++|+.|+|+|+.+.+. | .+.+. ...+.+... -..+||++||+|+.+-++
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tlG-i~~lIVavNKMD~v~wde 162 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTLG-IKQLIVAVNKMDLVSWDE 162 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhcC-CceEEEEEEcccccccCH
Confidence 889999999999998888888999999999999988631 1 11111 112222222 456888899999976433
Q ss_pred CCHHHHH----HHHHHcC-----CcEEEEeCCCCCCHHHHH
Q 028294 129 VSKEEGE----QFAKENG-----LLFLEASARTAQNVEEAF 160 (211)
Q Consensus 129 ~~~~~~~----~~~~~~~-----~~~~~~s~~~~~~i~~~~ 160 (211)
...+++. .+.+..+ ++|+++|+..|+|+.+.-
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence 3333332 2333333 569999999999987754
No 267
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=4e-14 Score=98.82 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=107.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
.+.-|++++|-.++|||||++.|.+.+.....+. .-++ ...+.+. +.++.-.|.+|+...+..|..++..+|+++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPT-lHPT--SE~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPT-LHPT--SEELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCC-cCCC--hHHheec--CceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 4556899999999999999999998876543221 1111 1112233 455778999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH---HH---c--------C---CcE
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA---KE---N--------G---LLF 145 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~---~~---~--------~---~~~ 145 (211)
+.+|+.|.+.+...+..++.+.... ..+.|++|.+||+|.+... +.++.+... +. . + +.+
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev 170 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV 170 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence 9999999998877766555554333 2589999999999986543 223322111 11 1 1 125
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 028294 146 LEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 146 ~~~s~~~~~~i~~~~~~i~~~ 166 (211)
+-+|...+.+--+.|.++.+.
T Consensus 171 fmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 171 FMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEEccCccceeeeehhhh
Confidence 667777766666666665543
No 268
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.51 E-value=5.9e-13 Score=105.98 Aligned_cols=121 Identities=21% Similarity=0.246 Sum_probs=84.6
Q ss_pred CCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCH----------HHHHHHHHHHHHHHHhc-CCCCeEEEEEe
Q 028294 51 DGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR----------ETFNHLSSWLEDARQHA-NPNMSIMLVGN 119 (211)
Q Consensus 51 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~-~~~~p~ivv~n 119 (211)
....+.+.+||++|+...+..|..++.+++++|||+|+++. ..+......+..+.... -.+.|+++++|
T Consensus 157 ~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~N 236 (317)
T cd00066 157 TIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLN 236 (317)
T ss_pred EecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEcc
Confidence 33456788999999999999999999999999999999874 22322223333332222 15899999999
Q ss_pred cCCCCCC--------------C--CCCHHHHHHHHHH----------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028294 120 KCDLAHR--------------R--AVSKEEGEQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 120 K~Dl~~~--------------~--~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 171 (211)
|.|+..+ . ....+.+..+... ..+....++|.+..++..+|+.+.+.++...
T Consensus 237 K~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 237 KKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred ChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 9996221 1 2234444443332 1234678899999999999999998887754
No 269
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.51 E-value=1.2e-13 Score=111.83 Aligned_cols=165 Identities=14% Similarity=0.099 Sum_probs=117.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-----hh----hchHHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-----FR----SITRSY 75 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----~~----~~~~~~ 75 (211)
..-.++|+|.+++|||||+|.+..........++++..... -+++....+|++.||||.-. .. ....+.
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~v--GH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLV--GHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhh--hhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 55689999999999999999999777665555554444443 34566667899999999321 11 112333
Q ss_pred hccccEEEEEEECCCH--HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHH---HHHHHHHcCCcEEEEeC
Q 028294 76 YRGAAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE---GEQFAKENGLLFLEASA 150 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~s~ 150 (211)
.+--.+|+|++|++.. .+...-..++..|..... ++|+|+|+||+|+.....++.+. .......-+++++.+|+
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~ 323 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC 323 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-CCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence 3445589999999884 344444556667766664 89999999999997766665433 33444445689999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh
Q 028294 151 RTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 151 ~~~~~i~~~~~~i~~~~~~~~~ 172 (211)
.+.+|+-++-...++.+++..-
T Consensus 324 ~~eegVm~Vrt~ACe~LLa~RV 345 (620)
T KOG1490|consen 324 VQEEGVMDVRTTACEALLAARV 345 (620)
T ss_pred cchhceeeHHHHHHHHHHHHHH
Confidence 9999999999888877776554
No 270
>PRK00007 elongation factor G; Reviewed
Probab=99.50 E-value=5e-13 Score=116.60 Aligned_cols=118 Identities=18% Similarity=0.120 Sum_probs=80.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----CC-----------CCeeeEEEEEEEEECCEEEEEEEEeCCCccc
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----HD-----------LTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 67 (211)
+...+|+|+|+.++|||||+++|+....... .. ...+.+.......+......+.++||||+..
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 3456999999999999999999974221100 00 1123333333333333456788999999988
Q ss_pred hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
+.......+..+|++|+|+|+......+.... +..+.. .+.|.++++||+|+..
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~-~~~~~~---~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQSETV-WRQADK---YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhhHHH-HHHHHH---cCCCEEEEEECCCCCC
Confidence 87777888899999999999887543333222 233333 3789999999999875
No 271
>PRK12740 elongation factor G; Reviewed
Probab=99.49 E-value=7.1e-13 Score=115.57 Aligned_cols=109 Identities=21% Similarity=0.234 Sum_probs=75.1
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCC-----C-----------CCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHH
Q 028294 12 IGDTGVGKSCLLLQFTDKRFQPVH-----D-----------LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSY 75 (211)
Q Consensus 12 vG~~~~GKSsli~~l~~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~ 75 (211)
+|+.++|||||+++|+........ . ...+.+.......+......+.+|||||+..+...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999643221100 0 011333333333343345678999999998887888888
Q ss_pred hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028294 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 124 (211)
+..+|++++|+|+++.........| ..+.. .+.|+++++||+|+.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCC
Confidence 9999999999999886554433333 33322 378999999999975
No 272
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.48 E-value=1.1e-12 Score=100.67 Aligned_cols=119 Identities=20% Similarity=0.252 Sum_probs=72.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh---c-------h
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---I-------T 72 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---~-------~ 72 (211)
+..++|+|+|.+|+|||||+|+|++........ ...+..........++ ..+.+|||||...... . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 467899999999999999999999887543322 2223333333334444 4578999999654411 1 2
Q ss_pred HHHhc--cccEEEEEEECCCHH-HHHHHHHHHHHHHHhcCC--CCeEEEEEecCCCCC
Q 028294 73 RSYYR--GAAGALLVYDITRRE-TFNHLSSWLEDARQHANP--NMSIMLVGNKCDLAH 125 (211)
Q Consensus 73 ~~~~~--~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~Dl~~ 125 (211)
..++. ..|++++|..++... ... -...+..+...... -.++++|.||+|...
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 22332 577888887665432 222 12333344333221 256999999999854
No 273
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.48 E-value=5.7e-13 Score=100.33 Aligned_cols=161 Identities=19% Similarity=0.176 Sum_probs=93.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCC--CCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh-------chH----
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-------ITR---- 73 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-------~~~---- 73 (211)
++|+|+|.+|+||||++|.+++........ .+.+.........+++.. +.++||||...... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999888755432 233444444445667644 67999999432111 111
Q ss_pred HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCC-------HHHHHHHHHHcCCc
Q 028294 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVS-------KEEGEQFAKENGLL 144 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~-------~~~~~~~~~~~~~~ 144 (211)
...+..|++++|+.+.. -+... ...+..+..... .-..++|+++..|...+..+. ......+....+..
T Consensus 79 ~~~~g~ha~llVi~~~r-~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGR-FTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCc-chHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 12456899999999883 22211 222233333222 124678888888865443311 01234566667878
Q ss_pred EEEEeCC------CCCCHHHHHHHHHHHHHHHH
Q 028294 145 FLEASAR------TAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 145 ~~~~s~~------~~~~i~~~~~~i~~~~~~~~ 171 (211)
++.++.+ ....+.++++.|-+.+.+.-
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 8888776 23467777777776665543
No 274
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.48 E-value=6.1e-13 Score=116.45 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=80.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCC---------------CCCC---CCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR---------------FQPV---HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~ 65 (211)
+...+|+++|+.++|||||+++|+... +.+. ...+.........+.+++...++.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 456799999999999999999997531 1110 0011111111222345677788999999999
Q ss_pred cchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028294 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 124 (211)
..+.......+..+|++|+|+|+.+....+....| .... ..+.|.++++||+|..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL---KENVKPVLFINKVDRL 151 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH---HcCCCEEEEEEChhcc
Confidence 99888888999999999999999874322222222 2222 2367889999999985
No 275
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.47 E-value=2.1e-12 Score=100.87 Aligned_cols=125 Identities=15% Similarity=0.088 Sum_probs=73.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhch---HHHh----
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSIT---RSYY---- 76 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~---~~~~---- 76 (211)
..++|+++|.+|+||||++|+|++........ .+.+.+........+ ...+.+|||||........ ...+
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRA--GFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEEC--CeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 57899999999999999999999876532211 222222222223334 4568999999966432211 1112
Q ss_pred --ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCH
Q 028294 77 --RGAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSK 131 (211)
Q Consensus 77 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~ 131 (211)
...|+++||..++.......-...+..+..... .-.+.+|++|+.|...+...+.
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~ 173 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEY 173 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCH
Confidence 268999999765432111111223333333322 2357899999999764433343
No 276
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.46 E-value=2.9e-13 Score=102.24 Aligned_cols=169 Identities=15% Similarity=0.157 Sum_probs=97.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-------Ce-----eeEEEEEE-EE---------------------
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-------TI-----GVEFGARM-VT--------------------- 49 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~-------~~-----~~~~~~~~-~~--------------------- 49 (211)
+.++-|+++|..|+|||||++||..+-.....++ .+ +..+.++. +.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 3567899999999999999999975533222211 11 00000000 00
Q ss_pred --------------ECCEEEEEEEEeCCCccchhh------c-hHHHhc-cccEEEEEEECCCHH-HHHHHHHHHHHHHH
Q 028294 50 --------------IDGRPIKLQIWDTAGQESFRS------I-TRSYYR-GAAGALLVYDITRRE-TFNHLSSWLEDARQ 106 (211)
Q Consensus 50 --------------~~~~~~~l~l~D~~G~~~~~~------~-~~~~~~-~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~ 106 (211)
-....+++.++||||+.+... . ...+.. ..-++++|+|..... ....+..++.....
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 012335688999999754322 2 222222 233788888864321 12223344444444
Q ss_pred hcCCCCeEEEEEecCCCCCCCCCC-----HHHHHHHHH---------------------HcCCcEEEEeCCCCCCHHHHH
Q 028294 107 HANPNMSIMLVGNKCDLAHRRAVS-----KEEGEQFAK---------------------ENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 107 ~~~~~~p~ivv~nK~Dl~~~~~~~-----~~~~~~~~~---------------------~~~~~~~~~s~~~~~~i~~~~ 160 (211)
..+.+.|+|++.||+|+.+..-.. .+..++-.. ..++..+-+|+.+|.|++++|
T Consensus 177 lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~ 256 (366)
T KOG1532|consen 177 LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFF 256 (366)
T ss_pred HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHH
Confidence 445699999999999986532110 000000000 035668899999999999999
Q ss_pred HHHHHHHHHHHh
Q 028294 161 IKTAAKILQNIQ 172 (211)
Q Consensus 161 ~~i~~~~~~~~~ 172 (211)
..+.+.+-+...
T Consensus 257 ~av~~~vdEy~~ 268 (366)
T KOG1532|consen 257 TAVDESVDEYEE 268 (366)
T ss_pred HHHHHHHHHHHH
Confidence 998877765443
No 277
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.44 E-value=3.7e-12 Score=102.25 Aligned_cols=118 Identities=20% Similarity=0.260 Sum_probs=82.3
Q ss_pred EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHH----------HHHHHHHHHHHHHHhc-CCCCeEEEEEecCC
Q 028294 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE----------TFNHLSSWLEDARQHA-NPNMSIMLVGNKCD 122 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 122 (211)
...+.+||.+|+...+..|..++.+++++|||+|+++.. .+......+..+.... -.+.|++|++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 455789999999999999999999999999999999732 2333333333333221 25799999999999
Q ss_pred CCCC--------------C-CCCHHHHHHHHHH-----c------CCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028294 123 LAHR--------------R-AVSKEEGEQFAKE-----N------GLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 123 l~~~--------------~-~~~~~~~~~~~~~-----~------~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 171 (211)
+..+ . ....+.+..+... . .+..+.++|.+..++..+|+.+...+++..
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 7321 1 1233333333322 1 234678889999999999999888887765
No 278
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=7.5e-13 Score=96.40 Aligned_cols=114 Identities=17% Similarity=0.261 Sum_probs=78.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhc---cccEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR---GAAGA 82 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~---~~d~~ 82 (211)
.-.|+++|+.++|||+|+-+|..+.....+.. .+-....+.+... .+.++|.||+.+.+.-...+++ .+-++
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS---iepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~akai 112 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTS---IEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKAI 112 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeee---eccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence 35799999999999999999887744333221 1112222223222 2689999999999887666766 68899
Q ss_pred EEEEECCC-HHHHHHHHHHHHHHHHhc---CCCCeEEEEEecCCCC
Q 028294 83 LLVYDITR-RETFNHLSSWLEDARQHA---NPNMSIMLVGNKCDLA 124 (211)
Q Consensus 83 i~v~d~~~-~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~Dl~ 124 (211)
|||+|..- +.....+..++..+.... ..+.|++|+.||.|+.
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF 158 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence 99999754 333455555555443333 4688999999999984
No 279
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.42 E-value=1.1e-11 Score=110.62 Aligned_cols=145 Identities=26% Similarity=0.267 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE-----------EE-----EEEEEeCCCccchhhchHHHhcccc
Q 028294 17 VGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR-----------PI-----KLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 17 ~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~-----~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
++||||+.+|.+...........+..+....+..+.. .. .+.||||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 3599999999987765443333333333333333210 01 2789999999999888888888999
Q ss_pred EEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC----------------HHHHH----HH
Q 028294 81 GALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS----------------KEEGE----QF 137 (211)
Q Consensus 81 ~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~----------------~~~~~----~~ 137 (211)
++++|+|+++ +.++..+. .+.. .+.|+++++||+|+....... ..+.. ..
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999987 34433332 2222 278999999999985321100 01110 00
Q ss_pred ---HHH---------------cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 138 ---AKE---------------NGLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 138 ---~~~---------------~~~~~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
..+ ..++++++||++|+|+++++..|.....
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 011 1356899999999999999987765443
No 280
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.42 E-value=7.5e-13 Score=101.67 Aligned_cols=96 Identities=22% Similarity=0.285 Sum_probs=76.9
Q ss_pred cchhhchHHHhccccEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc
Q 028294 66 ESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 144 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 144 (211)
+++..+.+.++.++|++++|||+.++. ++..+..|+..+.. .+.|+++|+||+||.+......+....+ ...+++
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCCCe
Confidence 567777888999999999999999887 89999999876643 3799999999999965443333334433 457889
Q ss_pred EEEEeCCCCCCHHHHHHHHHH
Q 028294 145 FLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 145 ~~~~s~~~~~~i~~~~~~i~~ 165 (211)
++++||+++.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999987753
No 281
>PTZ00258 GTP-binding protein; Provisional
Probab=99.41 E-value=9.8e-12 Score=100.58 Aligned_cols=85 Identities=21% Similarity=0.185 Sum_probs=59.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCccc--
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES-- 67 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~-- 67 (211)
..++|+|+|.|++|||||+|+|.+........+.++.+.....+.+.+. ..++.++|+||...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 5679999999999999999999887765544455454544444444432 23588999999432
Q ss_pred -----hhhchHHHhccccEEEEEEECC
Q 028294 68 -----FRSITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 68 -----~~~~~~~~~~~~d~~i~v~d~~ 89 (211)
........++.+|++++|+|..
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112334567899999999973
No 282
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.39 E-value=1.7e-11 Score=91.32 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=64.8
Q ss_pred EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028294 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 134 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 134 (211)
....+.++.|.......... -+|.+|.|+|+.+...... .+...+ ...-++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 45667788884322222222 2578999999987654221 111111 122389999999975322233444
Q ss_pred HHHHHH--cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 135 EQFAKE--NGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 135 ~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
.+..+. .+.+++++|+++|.|++++|++|.+.+
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444443 457899999999999999999998765
No 283
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.38 E-value=3.2e-11 Score=93.32 Aligned_cols=160 Identities=15% Similarity=0.282 Sum_probs=112.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC--CEEEEEEEEeCCCccchhhchHHHhcccc---
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--GRPIKLQIWDTAGQESFRSITRSYYRGAA--- 80 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~~d--- 80 (211)
.-+|+|+|..++||||||.+|-+.. ...+..+..+....++-+ +...++.+|-.-|+.-+..+....+....
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 3479999999999999999998664 444444666655444332 23457889999998777777666665442
Q ss_pred -EEEEEEECCCHHH-HHHHHHHHHHHHH-------------------------hcC------------------------
Q 028294 81 -GALLVYDITRRET-FNHLSSWLEDARQ-------------------------HAN------------------------ 109 (211)
Q Consensus 81 -~~i~v~d~~~~~~-~~~~~~~~~~~~~-------------------------~~~------------------------ 109 (211)
.+|++.|+++|.+ ++.+..|..-+.+ +.+
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 7899999999844 3455555442111 111
Q ss_pred ------------CCCeEEEEEecCCCC----CCCCCC-------HHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 110 ------------PNMSIMLVGNKCDLA----HRRAVS-------KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 110 ------------~~~p~ivv~nK~Dl~----~~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
-++|++||.+|+|.. .+.+.. ...+++||..+|..++.+|.+...|++-+..+|.+.
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 168999999999983 111111 133567888999999999999999999998888877
Q ss_pred HH
Q 028294 167 IL 168 (211)
Q Consensus 167 ~~ 168 (211)
.+
T Consensus 289 ~y 290 (473)
T KOG3905|consen 289 SY 290 (473)
T ss_pred hc
Confidence 64
No 284
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.38 E-value=7.9e-12 Score=100.72 Aligned_cols=166 Identities=17% Similarity=0.170 Sum_probs=111.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCC--CC------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ--PV------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~ 71 (211)
.-+|+|+-+..-|||||+..|+.+... +. ...-.|+++-.+...+.....+++|+||||+..|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 357999999999999999999865321 11 1122367777776667777788999999999999999
Q ss_pred hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC-CHHHHHHHHHH-------cCC
Q 028294 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKE-------NGL 143 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~-------~~~ 143 (211)
.+..+.-+|++++++|+.+..- .+.+ .-+.+....+.+.|||+||.|.+..+.. -.++...+..+ ..+
T Consensus 85 VERvl~MVDgvlLlVDA~EGpM-PQTr---FVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPM-PQTR---FVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCC-Cchh---hhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 9999999999999999987431 1112 2223333358889999999998765421 12333333333 466
Q ss_pred cEEEEeCCCCC------CHHHHHHHHHHHHHHHHhhcc
Q 028294 144 LFLEASARTAQ------NVEEAFIKTAAKILQNIQEGA 175 (211)
Q Consensus 144 ~~~~~s~~~~~------~i~~~~~~i~~~~~~~~~~~~ 175 (211)
|++..|++.|. +-.+-+.-|.+.+++..+.+.
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 78888888653 111223344445555555554
No 285
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.37 E-value=1.9e-11 Score=107.34 Aligned_cols=117 Identities=19% Similarity=0.171 Sum_probs=78.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC--C------------CeeeEEEEE--E--EEECCEEEEEEEEeCCCc
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--L------------TIGVEFGAR--M--VTIDGRPIKLQIWDTAGQ 65 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~--~------------~~~~~~~~~--~--~~~~~~~~~l~l~D~~G~ 65 (211)
+..-+|+++|+.++|||||+.+|+......... . ..+.++... . +..++....+.|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 344579999999999999999998543211100 0 001222111 1 223445678899999999
Q ss_pred cchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028294 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 124 (211)
..+.......+..+|++|+|+|+...........| ...... +.|.++++||+|..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~~---~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALRE---RVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHHc---CCCeEEEEECchhh
Confidence 99888888899999999999999875432222233 222222 56789999999975
No 286
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.35 E-value=2.7e-11 Score=100.00 Aligned_cols=160 Identities=21% Similarity=0.294 Sum_probs=119.1
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++..++|+.++|||.|++.++++.+......+....+.+......+....+.+-|.+-. ....+...- ..+|++.
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~ 500 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVAC 500 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEE
Confidence 36789999999999999999999999988877677777777777777676667777777643 222222222 6799999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc-EEEEeCCCCCCHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL-FLEASARTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~~ 162 (211)
++||.+++.+|..+....+.-... .+.|+++|+.|+|+.+..+...-.-.+++..++++ .+.+|.+..-. .++|.+
T Consensus 501 ~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~k 577 (625)
T KOG1707|consen 501 LVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFIK 577 (625)
T ss_pred EecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHHH
Confidence 999999999998887765554433 58999999999999765432222237889999886 66677774323 788888
Q ss_pred HHHHHH
Q 028294 163 TAAKIL 168 (211)
Q Consensus 163 i~~~~~ 168 (211)
|..+..
T Consensus 578 L~~~A~ 583 (625)
T KOG1707|consen 578 LATMAQ 583 (625)
T ss_pred HHHhhh
Confidence 877664
No 287
>PRK13768 GTPase; Provisional
Probab=99.35 E-value=1.5e-11 Score=94.93 Aligned_cols=110 Identities=19% Similarity=0.191 Sum_probs=68.7
Q ss_pred EEEEEeCCCccchh---hchHHHhcc-----ccEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028294 56 KLQIWDTAGQESFR---SITRSYYRG-----AAGALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 56 ~l~l~D~~G~~~~~---~~~~~~~~~-----~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 126 (211)
.+.+||+||+.+.. ..+..+++. .+++++|+|+......... ..++.........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 57899999976643 233333222 7899999999664332222 12222221111248999999999998654
Q ss_pred CCCCHHHHHH----------------------------HHHHcC--CcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 127 RAVSKEEGEQ----------------------------FAKENG--LLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 127 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
.+. +.... ..+..+ .+++++|++++.|++++.++|.+.+
T Consensus 178 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 178 EEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred hhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 221 11111 111223 5789999999999999999987765
No 288
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.34 E-value=6.5e-12 Score=111.62 Aligned_cols=118 Identities=19% Similarity=0.186 Sum_probs=81.0
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-----------C---CeeeEEEE--EEEEE--------------CC
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-----------L---TIGVEFGA--RMVTI--------------DG 52 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-----------~---~~~~~~~~--~~~~~--------------~~ 52 (211)
.+..-+|+|+|+.++|||||+++|+......... . ..+.++.. ..+.+ ++
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 3456799999999999999999998543211000 0 01222221 11222 12
Q ss_pred EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028294 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 124 (211)
....++++||||+..|.......++.+|++|+|+|+.+.........|. .+. ..+.|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QAL---GERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHH---HCCCCEEEEEECCccc
Confidence 3567899999999999998899999999999999998864433333332 222 2378999999999985
No 289
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.34 E-value=1.4e-11 Score=98.72 Aligned_cols=157 Identities=11% Similarity=0.128 Sum_probs=76.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC---eeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHH-----h
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT---IGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSY-----Y 76 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~-----~ 76 (211)
.+++|+|+|.+|+|||||||+|.+-.-....... +..+.....+.....+ .+.+||.||......-...| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 5689999999999999999999864433222221 1222333333333222 37899999964333322323 5
Q ss_pred ccccEEEEEEECCCHHHHHHHHHH-HHHHHHhcCCCCeEEEEEecCCCC-------CCCCCC----HHHHHHHHHH----
Q 028294 77 RGAAGALLVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNKCDLA-------HRRAVS----KEEGEQFAKE---- 140 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~-------~~~~~~----~~~~~~~~~~---- 140 (211)
...|.+|++.+-.=. ...-+ ...+.+. ++|+++|-+|.|.. .+.... .+++++.+.+
T Consensus 113 ~~yD~fiii~s~rf~----~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 113 YRYDFFIIISSERFT----ENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GG-SEEEEEESSS------HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred cccCEEEEEeCCCCc----hhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 677888877764322 22222 2333333 89999999999961 111122 2344444443
Q ss_pred cCC---cEEEEeCCCCC--CHHHHHHHHHHHHHH
Q 028294 141 NGL---LFLEASARTAQ--NVEEAFIKTAAKILQ 169 (211)
Q Consensus 141 ~~~---~~~~~s~~~~~--~i~~~~~~i~~~~~~ 169 (211)
.++ ++|.+|+.+-. ++..+.+.|.+.+..
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~ 219 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPA 219 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-G
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHH
Confidence 233 48899988753 455555555544433
No 290
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.4e-12 Score=98.45 Aligned_cols=162 Identities=18% Similarity=0.133 Sum_probs=107.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCCeee-------------------EEEEEEEE--E---CCEEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGV-------------------EFGARMVT--I---DGRPIKL 57 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~---~~~~~~~~-------------------~~~~~~~~--~---~~~~~~l 57 (211)
-.++|.++|+..-|||||.++|.+-.... +.....++ .+...... . ...-.++
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 36899999999999999999997643211 11110000 00000000 0 0123468
Q ss_pred EEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC--CCCHHHHH
Q 028294 58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR--AVSKEEGE 135 (211)
Q Consensus 58 ~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~ 135 (211)
.|+|.||++-..+....-..-.|+.++|++++.+....+...-+-.+.... -..++|+-||.|+...+ ..+.+++.
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qIk 166 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQIK 166 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHHH
Confidence 999999999888866666667899999999998544333333333333332 45689999999996532 23445666
Q ss_pred HHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 136 QFAKE---NGLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 136 ~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
+|.+. .+.+++++||..+.|++.+++.|.+.+.
T Consensus 167 ~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 167 EFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHhcccccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 66664 5778999999999999999888877764
No 291
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.32 E-value=2.6e-11 Score=94.70 Aligned_cols=153 Identities=21% Similarity=0.173 Sum_probs=106.7
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCC-----------------C--------------CCCCeeeEEEEEEEEEC
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-----------------V--------------HDLTIGVEFGARMVTID 51 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~-----------------~--------------~~~~~~~~~~~~~~~~~ 51 (211)
-...++++-+|+..=||||||=||+...... . ...-.|+++.....-+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 3457899999999999999999997432100 0 00012666666655666
Q ss_pred CEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCH
Q 028294 52 GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 131 (211)
Q Consensus 52 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 131 (211)
-.+.++.+-||||++.|..+.-.-...+|+.|+++|+...- +++. .....+..... -.++++.+||+||.+..+...
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QT-rRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQT-RRHSFIASLLG-IRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHh-HHHHHHHHHhC-CcEEEEEEeeecccccCHHHH
Confidence 67778999999999999998888888999999999996532 1222 11222333222 356888899999988765544
Q ss_pred HHH----HHHHHHcCCc---EEEEeCCCCCCHHH
Q 028294 132 EEG----EQFAKENGLL---FLEASARTAQNVEE 158 (211)
Q Consensus 132 ~~~----~~~~~~~~~~---~~~~s~~~~~~i~~ 158 (211)
+.+ ..|+...++. ++++||+.|+|+-.
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 443 4566666654 99999999998754
No 292
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.32 E-value=3.2e-11 Score=82.81 Aligned_cols=114 Identities=29% Similarity=0.410 Sum_probs=81.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
+||+++|..|+|||+|+.++....+...+. ++.+ +......+++..+.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999998776654433 3322 233344566778999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028294 86 YDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 157 (211)
++..+..++..+ |...+....+.+.|.++++||.|+.+......++.. .++++|++++.++.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 999999888765 777666655567889999999998543333333322 34567788888763
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.32 E-value=1.9e-11 Score=97.11 Aligned_cols=114 Identities=14% Similarity=0.076 Sum_probs=71.5
Q ss_pred EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CH
Q 028294 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SK 131 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~ 131 (211)
.+.+.|.||+|..... ......+|.+++|.+....+....+. ..+. ...-++|+||+|+...... ..
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~-----E~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK---KGIM-----ELADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH---hhhh-----hhhheEEeehhcccchhHHHHHH
Confidence 4678899999976322 22566799999997754444433322 2122 2223899999998643211 11
Q ss_pred HHHHHHHHH-------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhccccc
Q 028294 132 EEGEQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALDA 178 (211)
Q Consensus 132 ~~~~~~~~~-------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~~~~~ 178 (211)
.+....... ...+++.+|++++.|++++++.|.+.+....+.+....
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~sg~l~~ 270 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTASGEFAA 270 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccCChHHH
Confidence 222222221 12579999999999999999999988765555444443
No 294
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.3e-11 Score=91.80 Aligned_cols=163 Identities=20% Similarity=0.273 Sum_probs=110.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh---chHHHhccccEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---ITRSYYRGAAGAL 83 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---~~~~~~~~~d~~i 83 (211)
.+|+++|..-+|||| +++...++..+...-....+..+..-++.+.-+.+.+||+||+-.+.. -....++.+.++|
T Consensus 28 p~ilLMG~rRsGKsS-I~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSS-IQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcch-hhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 679999999999999 566777777776555544444444444555667899999999876554 3566789999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEecCCCCCCC--CCCHHHHHH-----H----HHHcCCcEEEEeC
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRR--AVSKEEGEQ-----F----AKENGLLFLEASA 150 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~-----~----~~~~~~~~~~~s~ 150 (211)
+|+|+.+.. .+.+..+...+.+.. .++..+-|+++|.|-..+. ......+.+ + .....+.|+.+|.
T Consensus 107 fvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 999997642 344444433443333 2788899999999974321 111111111 1 1123445888888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh
Q 028294 151 RTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 151 ~~~~~i~~~~~~i~~~~~~~~~ 172 (211)
.+ .++-+.|..+++++..+++
T Consensus 186 yD-HSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 186 YD-HSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred cc-hHHHHHHHHHHHHHhhhch
Confidence 87 5899999999999887776
No 295
>PTZ00416 elongation factor 2; Provisional
Probab=99.32 E-value=1.2e-11 Score=109.89 Aligned_cols=117 Identities=23% Similarity=0.230 Sum_probs=79.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC--CC------------CCeeeEEEE--EEEEEC--------CEEEEEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--HD------------LTIGVEFGA--RMVTID--------GRPIKLQI 59 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~--~~------------~~~~~~~~~--~~~~~~--------~~~~~l~l 59 (211)
+..-+|+++|+.++|||||+++|+....... .. ...+.++.. ..+.++ +....+.|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4556999999999999999999986322110 00 001222221 122222 12567899
Q ss_pred EeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028294 60 WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 60 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 124 (211)
+||||+..+.......+..+|++|+|+|+.+....... ..+..+.. .+.|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHHHHHH---cCCCEEEEEEChhhh
Confidence 99999999888888899999999999999885433322 22333332 368999999999985
No 296
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.32 E-value=2.3e-11 Score=91.29 Aligned_cols=152 Identities=18% Similarity=0.178 Sum_probs=83.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC------------CCCCCeeeEEEEEEEEEC--------------------C
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP------------VHDLTIGVEFGARMVTID--------------------G 52 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~--------------------~ 52 (211)
....|+++|+.|+|||||+++++...... ......-.......+.+. .
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 46789999999999999999997541100 000000000000001110 0
Q ss_pred EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028294 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 132 (211)
Q Consensus 53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 132 (211)
....+.+.++.|.-. .. ..+....+..+.|+|+.+..... ... .. . ...|.++++||+|+.+......+
T Consensus 101 ~~~d~IiIEt~G~l~-~~--~~~~~~~~~~i~Vvd~~~~d~~~--~~~-~~--~---~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 101 DDIDLLFIENVGNLV-CP--ADFDLGEHMRVVLLSVTEGDDKP--LKY-PG--M---FKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCCEEEEecCCCcC-CC--cccccccCeEEEEEecCcccchh--hhh-Hh--H---HhhCCEEEEEHHHccccchhhHH
Confidence 123556777777210 01 11112344556677776543211 011 01 1 25678999999999653322233
Q ss_pred HHHHHHHHc--CCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 133 EGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 133 ~~~~~~~~~--~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
......+.. ..+++++|++++.|++++++++.+..
T Consensus 170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 444444443 47899999999999999999998753
No 297
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.31 E-value=1.7e-10 Score=92.50 Aligned_cols=83 Identities=19% Similarity=0.133 Sum_probs=57.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEE---------------EEEEEEeCCCccchh--
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP---------------IKLQIWDTAGQESFR-- 69 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~l~D~~G~~~~~-- 69 (211)
++|+++|.|++|||||+|+|++........+.++.+.....+.+.+.. ..+.+.|+||.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999887544333444444444444444321 258899999943211
Q ss_pred --h---chHHHhccccEEEEEEECC
Q 028294 70 --S---ITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 70 --~---~~~~~~~~~d~~i~v~d~~ 89 (211)
. .....++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 2233467899999999973
No 298
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.30 E-value=1.6e-10 Score=87.75 Aligned_cols=139 Identities=17% Similarity=0.171 Sum_probs=82.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
....|+++|++|+|||||++.+.+...........|. + .+ ......++.++||||.. .......+.+|++++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVll 109 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVLL 109 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH---HHHHHHHHhcCEEEE
Confidence 3467999999999999999999865322111111121 1 11 11235567899999854 223345688999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCeE-EEEEecCCCCCCCC-C--CHHHHHH-HHHH--cCCcEEEEeCCCCCC
Q 028294 85 VYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAHRRA-V--SKEEGEQ-FAKE--NGLLFLEASARTAQN 155 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~-~--~~~~~~~-~~~~--~~~~~~~~s~~~~~~ 155 (211)
|+|+........ ..++..+.. .+.|. ++++||+|+.+... . ..+.+.. +..+ .+.+++.+||+++..
T Consensus 110 viDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 110 LIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 999976433222 223333332 25675 45999999864221 1 0111222 2222 346799999998743
No 299
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.30 E-value=2.5e-12 Score=98.12 Aligned_cols=112 Identities=20% Similarity=0.182 Sum_probs=59.4
Q ss_pred EEEEEeCCCccchhhchHHHh--------ccccEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028294 56 KLQIWDTAGQESFRSITRSYY--------RGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 126 (211)
.+.++|||||.++...+.... ...-++++++|+.-..+ ...+..++..+......+.|.+.++||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 578999999988777554443 33447888888754221 222333333333222238999999999999652
Q ss_pred CC------------C-------CHHHHHHHHHH---cC-C-cEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 127 RA------------V-------SKEEGEQFAKE---NG-L-LFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 127 ~~------------~-------~~~~~~~~~~~---~~-~-~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
.. . .....+..+.- .+ . .++.+|+.+++++.+++..|-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 10 0 00111122222 22 3 699999999999999998877654
No 300
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.30 E-value=1.4e-10 Score=91.96 Aligned_cols=127 Identities=22% Similarity=0.286 Sum_probs=88.0
Q ss_pred EEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHH-------HHHHHHHHHHHHhcC----CCCeEE
Q 028294 47 MVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-------NHLSSWLEDARQHAN----PNMSIM 115 (211)
Q Consensus 47 ~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~-------~~~~~~~~~~~~~~~----~~~p~i 115 (211)
.+.+.-....+.+.|++||...+.-|...+.+++++|||+++++.+.. ..+..-+..+..... .+.++|
T Consensus 187 e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsii 266 (354)
T KOG0082|consen 187 EVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSII 266 (354)
T ss_pred EEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEE
Confidence 344444446788999999999999999999999999999999875432 223333333333332 579999
Q ss_pred EEEecCCCCCC--------------C-CCCHHHHHHHHHH----------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028294 116 LVGNKCDLAHR--------------R-AVSKEEGEQFAKE----------NGLLFLEASARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 116 vv~nK~Dl~~~--------------~-~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 170 (211)
+++||.|+-++ . ....+++..+... ..+.+..+.|.+..+|+.+|..+.+.+...
T Consensus 267 LFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 267 LFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred EEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 99999998322 1 1233444333322 134467789999999999999999888776
Q ss_pred Hhh
Q 028294 171 IQE 173 (211)
Q Consensus 171 ~~~ 173 (211)
+-.
T Consensus 347 nlk 349 (354)
T KOG0082|consen 347 NLK 349 (354)
T ss_pred HHH
Confidence 643
No 301
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.30 E-value=2.8e-10 Score=91.57 Aligned_cols=161 Identities=17% Similarity=0.217 Sum_probs=96.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC--------------CCee-------eEE---EEEEEEE-CCEEEEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------------LTIG-------VEF---GARMVTI-DGRPIKLQI 59 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~--------------~~~~-------~~~---~~~~~~~-~~~~~~l~l 59 (211)
..+.|.|+|+.++|||||+|+|.+.-..+... ...| +-+ ....+.. ++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 46889999999999999999999882211111 1112 112 2222322 556678899
Q ss_pred EeCCCccchhh-----------------------------chHHHhc-cccEEEEEE-ECC--C--HH-HHHHHHHHHHH
Q 028294 60 WDTAGQESFRS-----------------------------ITRSYYR-GAAGALLVY-DIT--R--RE-TFNHLSSWLED 103 (211)
Q Consensus 60 ~D~~G~~~~~~-----------------------------~~~~~~~-~~d~~i~v~-d~~--~--~~-~~~~~~~~~~~ 103 (211)
+||+|...-.+ -+...+. .+|..|+|. |.+ + ++ ....-..++..
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999321111 1344455 889888888 663 1 11 22334456666
Q ss_pred HHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028294 104 ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 104 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 172 (211)
+... ++|+++++|+.|...+ ...+....+..+.+++++.+|+.+= .-+++ ..|++.++..++
T Consensus 176 Lk~~---~kPfiivlN~~dp~~~--et~~l~~~l~eky~vpvl~v~c~~l-~~~DI-~~il~~vL~EFP 237 (492)
T TIGR02836 176 LKEL---NKPFIILLNSTHPYHP--ETEALRQELEEKYDVPVLAMDVESM-RESDI-LSVLEEVLYEFP 237 (492)
T ss_pred HHhc---CCCEEEEEECcCCCCc--hhHHHHHHHHHHhCCceEEEEHHHc-CHHHH-HHHHHHHHhcCC
Confidence 6654 8999999999994322 1344455666667888888887642 33332 344455554444
No 302
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.29 E-value=1.1e-10 Score=96.72 Aligned_cols=160 Identities=16% Similarity=0.290 Sum_probs=109.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC--CEEEEEEEEeCCCccchhhchHHHhcccc----
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID--GRPIKLQIWDTAGQESFRSITRSYYRGAA---- 80 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~l~D~~G~~~~~~~~~~~~~~~d---- 80 (211)
-.|+|+|..++|||||+.+|.+.. ...++.+.+|....+.-+ ....++.+|...|...+..+....+....
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 479999999999999999987543 334455666655544322 22357899999887777777766664433
Q ss_pred EEEEEEECCCHHHH-HHHHHHHH-------------------------HHHHhcC-------------------------
Q 028294 81 GALLVYDITRRETF-NHLSSWLE-------------------------DARQHAN------------------------- 109 (211)
Q Consensus 81 ~~i~v~d~~~~~~~-~~~~~~~~-------------------------~~~~~~~------------------------- 109 (211)
.+|+|+|.+.|..+ +.+..|+. .++.+.+
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 78899999998654 34444433 1111100
Q ss_pred ------------CCCeEEEEEecCCCCC----CCCCC-------HHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 110 ------------PNMSIMLVGNKCDLAH----RRAVS-------KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 110 ------------~~~p~ivv~nK~Dl~~----~~~~~-------~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
-++|++||.+|+|... +.... ..-++.+|..+|+.++.+|++...+++-++.+|.+.
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~ 262 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR 262 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence 1479999999999732 11111 123567888899999999999999999888888777
Q ss_pred HHH
Q 028294 167 ILQ 169 (211)
Q Consensus 167 ~~~ 169 (211)
+..
T Consensus 263 l~~ 265 (472)
T PF05783_consen 263 LYG 265 (472)
T ss_pred hcc
Confidence 654
No 303
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.29 E-value=8.3e-12 Score=92.11 Aligned_cols=145 Identities=19% Similarity=0.307 Sum_probs=87.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC-EEEEEEEEeCCCccchhh-----chHHHhccc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRS-----ITRSYYRGA 79 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~-----~~~~~~~~~ 79 (211)
.-||+++|.+|+|||++= .+....+..-.....|.++...+-++.. .+..+.+||++|++.+.. .....+.++
T Consensus 4 ~kKvlLMGrsGsGKsSmr-siiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMR-SIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccc-hhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 458999999999999954 4443333222222234433333333321 246789999999985433 455678899
Q ss_pred cEEEEEEECCCHHHHHHHHHHHH---HHHHhcCCCCeEEEEEecCCCCCCCC--CCHHHH----HHHHHHcCCcEEEEeC
Q 028294 80 AGALLVYDITRRETFNHLSSWLE---DARQHANPNMSIMLVGNKCDLAHRRA--VSKEEG----EQFAKENGLLFLEASA 150 (211)
Q Consensus 80 d~~i~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~----~~~~~~~~~~~~~~s~ 150 (211)
+++|+|||+...+-..++..+.. .+.+. .+...++++.+|.|+..... ...++- ..+....++.++++|.
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999988765454444333 33332 35777899999999964321 111111 1222223455777776
Q ss_pred CC
Q 028294 151 RT 152 (211)
Q Consensus 151 ~~ 152 (211)
.+
T Consensus 162 wD 163 (295)
T KOG3886|consen 162 WD 163 (295)
T ss_pred hh
Confidence 65
No 304
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.29 E-value=5.4e-11 Score=86.27 Aligned_cols=62 Identities=24% Similarity=0.247 Sum_probs=42.7
Q ss_pred EEEEeCCCccc----hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecC
Q 028294 57 LQIWDTAGQES----FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121 (211)
Q Consensus 57 l~l~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 121 (211)
+.|+|+||... ....+..+++.+|++|+|.++.+..+......+....... ...+++|.||+
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence 78999999643 2356778889999999999999865544444444443333 44488888984
No 305
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=8.7e-11 Score=101.34 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=89.5
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----C-----------CCCeeeEEEEEEEEECCE-EEEEEEEeCCC
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----H-----------DLTIGVEFGARMVTIDGR-PIKLQIWDTAG 64 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----~-----------~~~~~~~~~~~~~~~~~~-~~~l~l~D~~G 64 (211)
..+..-+|.|+|+-.+|||||..+|+....... . ....|.++....+++... ...++++||||
T Consensus 6 ~~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPG 85 (697)
T COG0480 6 PLERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPG 85 (697)
T ss_pred ccccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCC
Confidence 345678999999999999999999974322111 1 012256666665666555 48899999999
Q ss_pred ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028294 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 124 (211)
+-.|.......++-+|++|+|+|+...-..+...-|++... .++|.++++||+|..
T Consensus 86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~----~~vp~i~fiNKmDR~ 141 (697)
T COG0480 86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK----YGVPRILFVNKMDRL 141 (697)
T ss_pred ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh----cCCCeEEEEECcccc
Confidence 99999999999999999999999998655444445544333 389999999999963
No 306
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=4.5e-10 Score=87.75 Aligned_cols=159 Identities=16% Similarity=0.204 Sum_probs=92.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCC-------CCCCCeeeEEEEEEEEE-------CCEEEEEEEEeCCCccchh
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-------VHDLTIGVEFGARMVTI-------DGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~-------~~~~~~l~l~D~~G~~~~~ 69 (211)
...+++.++|+..+|||||.++|..-.-.. ....-.+.+.....+.+ .+...++.++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 456999999999999999999997432211 11111222222222222 3556788999999997666
Q ss_pred hchHHHhccccEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCeEEEEEecCCCCCCCC--CCHHHH-HHHHHH-----
Q 028294 70 SITRSYYRGAAGALLVYDITRRETFNHLSS-WLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEG-EQFAKE----- 140 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~-~~~~~~----- 140 (211)
+....-..-.|..++|+|+...-.-+.... .+-.+. -...+||+||.|...+.+ ...+.. .+..+.
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 555555566789999999976432222211 222222 234677788888744321 111222 122111
Q ss_pred --cCCcEEEEeCCCC----CCHHHHHHHHHHHH
Q 028294 141 --NGLLFLEASARTA----QNVEEAFIKTAAKI 167 (211)
Q Consensus 141 --~~~~~~~~s~~~~----~~i~~~~~~i~~~~ 167 (211)
-+.|++++|+++| ..+.++.+.|...+
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 2368999999999 55555544444444
No 307
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.21 E-value=6.1e-10 Score=87.07 Aligned_cols=141 Identities=18% Similarity=0.254 Sum_probs=75.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC----------CCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-------
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH----------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQES------- 67 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~------- 67 (211)
..++|+|+|..|+|||||+|.|++....... ..+.........+.-++..+.+.++||||...
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999977554332 12223333333455578889999999999221
Q ss_pred -----------hhhc--------h-HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028294 68 -----------FRSI--------T-RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (211)
Q Consensus 68 -----------~~~~--------~-~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 127 (211)
+... + ...=..+|+++|.++.+... +..+ -+..+++.. ..+++|-|+.|+|.....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~--Di~~mk~Ls-~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPL--DIEFMKRLS-KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HH--HHHHHHHHT-TTSEEEEEESTGGGS-HH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHH--HHHHHHHhc-ccccEEeEEecccccCHH
Confidence 0000 0 00013467999999986532 1111 122334433 378999999999985422
Q ss_pred CC--CHHHHHHHHHHcCCcEEEEe
Q 028294 128 AV--SKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 128 ~~--~~~~~~~~~~~~~~~~~~~s 149 (211)
++ ..+.+......+++.++...
T Consensus 159 el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 159 ELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHHHcCceeeccc
Confidence 21 11223344455777766543
No 308
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.19 E-value=3.8e-10 Score=85.98 Aligned_cols=118 Identities=16% Similarity=0.187 Sum_probs=68.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCee-----e------EEEEEEE-------------------------
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-----V------EFGARMV------------------------- 48 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~-----~------~~~~~~~------------------------- 48 (211)
..++++|+|+.|+||||+++.+.+..+.+.....++ . ......+
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 456899999999999999999998753222111100 0 0000001
Q ss_pred -------------EECCE-EEEEEEEeCCCccc-------------hhhchHHHhc-cccEEEEEEECCCHHHHHHHHHH
Q 028294 49 -------------TIDGR-PIKLQIWDTAGQES-------------FRSITRSYYR-GAAGALLVYDITRRETFNHLSSW 100 (211)
Q Consensus 49 -------------~~~~~-~~~l~l~D~~G~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~~~~~~~~~ 100 (211)
.+.+. ...+.++|+||... ...+...|++ ..+.+++|+|+.....-.....+
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 11110 13578999999642 1124566777 44588999988653221111122
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 101 LEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 101 ~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
...+. ..+.|+++|+||.|..+
T Consensus 185 a~~ld---~~~~rti~ViTK~D~~~ 206 (240)
T smart00053 185 AKEVD---PQGERTIGVITKLDLMD 206 (240)
T ss_pred HHHHH---HcCCcEEEEEECCCCCC
Confidence 22222 24789999999999865
No 309
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.3e-10 Score=94.59 Aligned_cols=153 Identities=20% Similarity=0.219 Sum_probs=105.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCC-----------------------------CCCCCCCeeeEEEEEEEEECCEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-----------------------------QPVHDLTIGVEFGARMVTIDGRPI 55 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 55 (211)
..+..+++|+..+|||||+-+|+..-- ........|++..+....++-...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 457899999999999999999863211 011122347777888888887788
Q ss_pred EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028294 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 129 (211)
.+.|.|+||+..|-.....-..++|+.|+|+|++-.+ .|+ +.+.....++... -..++|++||+|+.+-.+-
T Consensus 256 ~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred eEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCccHH
Confidence 8999999999999888888889999999999997532 121 1222222223332 5668899999999764333
Q ss_pred CHHHHH----HHH-HHcC-----CcEEEEeCCCCCCHHHH
Q 028294 130 SKEEGE----QFA-KENG-----LLFLEASARTAQNVEEA 159 (211)
Q Consensus 130 ~~~~~~----~~~-~~~~-----~~~~~~s~~~~~~i~~~ 159 (211)
..+++. .|. +..| +.|+++|...|.|+...
T Consensus 334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 333333 233 2233 45999999999998765
No 310
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.18 E-value=1.1e-09 Score=92.83 Aligned_cols=120 Identities=15% Similarity=0.166 Sum_probs=73.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCccchh-------hc---h
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-------SI---T 72 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------~~---~ 72 (211)
++.++|+|+|.+|+||||++|.|++........ ...+..........++ ..+.++||||..... .. .
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 456899999999999999999999886443322 2222222222233444 457899999965421 11 2
Q ss_pred HHHhc--cccEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCC
Q 028294 73 RSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAH 125 (211)
Q Consensus 73 ~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~ 125 (211)
..++. ..|++|+|..+........-..++..+..... .-..+||++++.|..+
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 22333 57999999987643222122244555554443 1255788889998754
No 311
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.5e-10 Score=98.02 Aligned_cols=168 Identities=19% Similarity=0.191 Sum_probs=108.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC------------CE-EE---EEEEEeCCCccchh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID------------GR-PI---KLQIWDTAGQESFR 69 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~~---~l~l~D~~G~~~~~ 69 (211)
.+-++|+|+..+|||-|+..+.+...........+..+....+... .. .+ .+.++||||++.|.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt 554 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT 554 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence 4568999999999999999998765443332222222211111111 00 11 36789999999999
Q ss_pred hchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC------CCC----------CHHH
Q 028294 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR------RAV----------SKEE 133 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------~~~----------~~~~ 133 (211)
.+.......+|.+|+|+|+.+.-.-+. +..+.-...++.|+||++||+|..-. ..+ ...+
T Consensus 555 nlRsrgsslC~~aIlvvdImhGlepqt----iESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~E 630 (1064)
T KOG1144|consen 555 NLRSRGSSLCDLAILVVDIMHGLEPQT----IESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNE 630 (1064)
T ss_pred hhhhccccccceEEEEeehhccCCcch----hHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHH
Confidence 999999999999999999987422111 22223333348999999999996321 000 0011
Q ss_pred HH--------HHHHH-cC-------------CcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 028294 134 GE--------QFAKE-NG-------------LLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177 (211)
Q Consensus 134 ~~--------~~~~~-~~-------------~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~~~~ 177 (211)
+. +|+.. ++ +.++++||..|+||-+++.+|+++....+.....-
T Consensus 631 F~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m~~kl~y 696 (1064)
T KOG1144|consen 631 FKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLAY 696 (1064)
T ss_pred HHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 11 11111 11 13689999999999999999999988888765543
No 312
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=4.7e-10 Score=90.06 Aligned_cols=134 Identities=18% Similarity=0.136 Sum_probs=92.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G 64 (211)
.+-..+|+-+|.+|||||...|+--..... .....|+.+....+.++.....++|.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 445678999999999999999862211110 001226666666677777788899999999
Q ss_pred ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc
Q 028294 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 144 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 144 (211)
++.|..-+-..+..+|..+.|+|+...-.-+ ..++ +.--...+.|++-++||.|-... -+.++..++.+..++.
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q-T~KL---feVcrlR~iPI~TFiNKlDR~~r--dP~ELLdEiE~~L~i~ 164 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ-TLKL---FEVCRLRDIPIFTFINKLDREGR--DPLELLDEIEEELGIQ 164 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHH-HHHH---HHHHhhcCCceEEEeeccccccC--ChHHHHHHHHHHhCcc
Confidence 9999988888888999999999997753211 1222 22222358999999999997543 3456666665555443
No 313
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.15 E-value=3.7e-10 Score=89.46 Aligned_cols=104 Identities=15% Similarity=0.035 Sum_probs=64.1
Q ss_pred EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCH--
Q 028294 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK-- 131 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-- 131 (211)
.+.+.|.||+|... ........+|.++++...... ..+......+ .++|.++++||+|+........
T Consensus 126 g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~---~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 126 GYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTG---DDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCcc---HHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence 46788999999542 222456678888877554332 2232322222 2677899999999865322110
Q ss_pred HH----HHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 132 EE----GEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 132 ~~----~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
.. ...+... ...+++++|++++.|+++++++|.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 00 0111111 2246999999999999999999988754
No 314
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.14 E-value=2.8e-10 Score=82.35 Aligned_cols=149 Identities=17% Similarity=0.091 Sum_probs=89.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEE-----------------EE----EEE--------------C
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA-----------------RM----VTI--------------D 51 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-----------------~~----~~~--------------~ 51 (211)
+.|.|.|++|||||+|+.+++..-.......-++.+.+. .. .+. .
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~ 93 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD 93 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence 789999999999999999876432111100000111110 00 000 1
Q ss_pred CEEEEEEEEeCCCccchhhchHHHhcccc-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC
Q 028294 52 GRPIKLQIWDTAGQESFRSITRSYYRGAA-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 130 (211)
Q Consensus 52 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 130 (211)
.....+.|++.+| .-..... +.-.| .-|+|+|....+... ++-...+ -..-++|+||.|+......+
T Consensus 94 ~~~~Dll~iEs~G-NL~~~~s---p~L~d~~~v~VidvteGe~~P--~K~gP~i------~~aDllVInK~DLa~~v~~d 161 (202)
T COG0378 94 FPDLDLLFIESVG-NLVCPFS---PDLGDHLRVVVIDVTEGEDIP--RKGGPGI------FKADLLVINKTDLAPYVGAD 161 (202)
T ss_pred CCcCCEEEEecCc-ceecccC---cchhhceEEEEEECCCCCCCc--ccCCCce------eEeeEEEEehHHhHHHhCcc
Confidence 1124566677777 2111111 11234 788899987753210 0000011 11348999999998877777
Q ss_pred HHHHHHHHHH--cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 131 KEEGEQFAKE--NGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 131 ~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
.+...+.+++ .+.+++++|.++|.|++++++++....
T Consensus 162 levm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 162 LEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 7887777776 457899999999999999998887654
No 315
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.12 E-value=1.3e-10 Score=89.90 Aligned_cols=156 Identities=22% Similarity=0.192 Sum_probs=105.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc---------chhhchHHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE---------SFRSITRSY 75 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~---------~~~~~~~~~ 75 (211)
...-|.|||..++|||||+++|.+....+...-+-+.+......++...+. +.+.||.|.- .|.+ +..-
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~-vlltDTvGFisdLP~~LvaAF~A-TLee 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNF-VLLTDTVGFISDLPIQLVAAFQA-TLEE 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcE-EEEeechhhhhhCcHHHHHHHHH-HHHH
Confidence 346799999999999999999997766665544445555555566665443 5689999942 2222 2333
Q ss_pred hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe----EEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC
Q 028294 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS----IMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR 151 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 151 (211)
...+|.++.|.|+++|..-.+....+.-+....-+..| ++=|-||.|........ + ...-+.+|++
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~-E---------~n~~v~isal 324 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE-E---------KNLDVGISAL 324 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc-c---------cCCccccccc
Confidence 56899999999999997666666665656555433333 34456777764422111 1 1126779999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q 028294 152 TAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 152 ~~~~i~~~~~~i~~~~~~~~~ 172 (211)
+|+|++++...+-..+.....
T Consensus 325 tgdgl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410|consen 325 TGDGLEELLKAEETKVASETT 345 (410)
T ss_pred cCccHHHHHHHHHHHhhhhhe
Confidence 999999999888887766554
No 316
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=6.4e-10 Score=85.12 Aligned_cols=169 Identities=18% Similarity=0.155 Sum_probs=110.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCC----------CC----CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKR----------FQ----PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 70 (211)
..++|..+|+..-|||||..++..-. +. .......|+++....+.++-.+..+..+|+||+..|-.
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence 45899999999999999998875211 11 11223457888888888887788899999999999998
Q ss_pred chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeE-EEEEecCCCCCCCCCC---HHHHHHHHHHcCC---
Q 028294 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDLAHRRAVS---KEEGEQFAKENGL--- 143 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~--- 143 (211)
+...-..+.|+.|+|+++.|..- .+.+.-+...++ -+.|. ++++||+|+.++.++. ..+.+.+..++++
T Consensus 91 NMItgAaqmDgAILVVsA~dGpm-PqTrEHiLlarq---vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd 166 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ---VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGD 166 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhhhh---cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88878889999999999998432 111121112122 26764 5568999997644322 2345566666655
Q ss_pred --cEEEEeCCCCC----CHHHHHHHHHHHHHHHHhhcccc
Q 028294 144 --LFLEASARTAQ----NVEEAFIKTAAKILQNIQEGALD 177 (211)
Q Consensus 144 --~~~~~s~~~~~----~i~~~~~~i~~~~~~~~~~~~~~ 177 (211)
|++.-|++... ...+....|++++.+..+.+...
T Consensus 167 ~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~ 206 (394)
T COG0050 167 DTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD 206 (394)
T ss_pred CcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc
Confidence 47777766432 23334455556665555544443
No 317
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.1e-09 Score=91.94 Aligned_cols=117 Identities=21% Similarity=0.273 Sum_probs=84.5
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC---------------eeeEEEEE--EE---EECCEEEEEEEEeC
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT---------------IGVEFGAR--MV---TIDGRPIKLQIWDT 62 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~---------------~~~~~~~~--~~---~~~~~~~~l~l~D~ 62 (211)
.+...+|+++|+-+.|||+|+..|..+..+...... .|..+... ++ ...++.+-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 346788999999999999999999866543321110 01222111 11 12556677899999
Q ss_pred CCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Q 028294 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123 (211)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 123 (211)
||+-.|.....+.++.+|++++|+|+.+.-.+...+.....++ .+.|+.+|+||.|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq----~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ----NRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh----ccCcEEEEEehhHH
Confidence 9999999999999999999999999988766554433333332 38999999999995
No 318
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=9.2e-09 Score=81.69 Aligned_cols=84 Identities=23% Similarity=0.205 Sum_probs=59.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC----------------EEEEEEEEeCCCc----
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG----------------RPIKLQIWDTAGQ---- 65 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~l~l~D~~G~---- 65 (211)
.+++.|||-|++|||||+|+++.......-.|+.+++.......+.. ....+.++|++|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 37899999999999999999998886545555545555444433321 2346889999993
Q ss_pred ---cchhhchHHHhccccEEEEEEECC
Q 028294 66 ---ESFRSITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 66 ---~~~~~~~~~~~~~~d~~i~v~d~~ 89 (211)
+-....-.+-++++|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 223333445568999999999864
No 319
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.07 E-value=2.9e-09 Score=84.02 Aligned_cols=162 Identities=15% Similarity=0.253 Sum_probs=93.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC----------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh----
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---- 70 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---- 70 (211)
..++|+++|+.|.|||||+|.|++...... ..++.....+...+.-++..+.+.+.||||...+-.
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 468999999999999999999998743222 123334445555555578888999999999321111
Q ss_pred ----------chHHH------------h--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028294 71 ----------ITRSY------------Y--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 71 ----------~~~~~------------~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 126 (211)
....| + ..+|+++|.+..+... +..+. +..+.+.. ..+.+|-|+.|+|....
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~D--Ie~Mk~ls-~~vNlIPVI~KaD~lT~ 177 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLD--IEAMKRLS-KRVNLIPVIAKADTLTD 177 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHH--HHHHHHHh-cccCeeeeeeccccCCH
Confidence 01111 1 2256777777765432 11111 12223333 36789999999998442
Q ss_pred CCC--CHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028294 127 RAV--SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 127 ~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 172 (211)
.+. -.+.+.+....+++++|. ..+.+.-.+-.....+.+....|
T Consensus 178 ~El~~~K~~I~~~i~~~nI~vf~--pyd~e~~~~e~~e~~~~l~~~~P 223 (373)
T COG5019 178 DELAEFKERIREDLEQYNIPVFD--PYDPEDDEDESLEENQDLRSLIP 223 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCceeC--CCCccccchhhHHHHHHHhhcCC
Confidence 221 223345566668888885 34444432222233444444343
No 320
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.07 E-value=1.1e-08 Score=76.89 Aligned_cols=86 Identities=23% Similarity=0.200 Sum_probs=65.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch-------hhchHHHhcc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-------RSITRSYYRG 78 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~~~ 78 (211)
..+|+++|.|.+|||||+..+..-........+++.+.-...+++++.. +++.|.||.-.- .....+..+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEeec
Confidence 4689999999999999999998666555555565777777778888876 568999994322 2234456788
Q ss_pred ccEEEEEEECCCHHH
Q 028294 79 AAGALLVYDITRRET 93 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~ 93 (211)
+|.+++|.|++..+.
T Consensus 140 aDlilMvLDatk~e~ 154 (364)
T KOG1486|consen 140 ADLILMVLDATKSED 154 (364)
T ss_pred ccEEEEEecCCcchh
Confidence 999999999987544
No 321
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=4e-09 Score=85.00 Aligned_cols=157 Identities=17% Similarity=0.067 Sum_probs=106.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
.|+..|+-.-|||||++.+.+...... ....-|++........+..+..+.|+|.||++++-......+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 578889999999999999987654321 1122345555554555555557899999999999888888888999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH---HcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK---ENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+.++.-..+.. ..+.-+.... ....+||++|+|..++.++. +..++... ..+.+++.+|+.+|.||+++-+.|
T Consensus 82 ~~deGl~~qtg-EhL~iLdllg--i~~giivltk~D~~d~~r~e-~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l 157 (447)
T COG3276 82 AADEGLMAQTG-EHLLILDLLG--IKNGIIVLTKADRVDEARIE-QKIKQILADLSLANAKIFKTSAKTGRGIEELKNEL 157 (447)
T ss_pred eCccCcchhhH-HHHHHHHhcC--CCceEEEEeccccccHHHHH-HHHHHHHhhcccccccccccccccCCCHHHHHHHH
Confidence 99764322211 1112222221 34469999999997644221 22222222 245678999999999999999999
Q ss_pred HHHHH
Q 028294 164 AAKIL 168 (211)
Q Consensus 164 ~~~~~ 168 (211)
....-
T Consensus 158 ~~L~~ 162 (447)
T COG3276 158 IDLLE 162 (447)
T ss_pred HHhhh
Confidence 88874
No 322
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=1.6e-09 Score=80.68 Aligned_cols=150 Identities=17% Similarity=0.224 Sum_probs=84.1
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCC---------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP---------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---- 67 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~---- 67 (211)
|..-..++|+|||++|.|||||+|+|....... ....++........+.-++...++.+.||||...
T Consensus 41 mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN 120 (336)
T KOG1547|consen 41 MKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN 120 (336)
T ss_pred HhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence 444567999999999999999999997543322 1222333333333444577778899999999321
Q ss_pred ----------------------hhhchHHHhcc--ccEEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCC
Q 028294 68 ----------------------FRSITRSYYRG--AAGALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCD 122 (211)
Q Consensus 68 ----------------------~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D 122 (211)
........++. +++++|.+..+.. ++..+. .++..+.+ -..++-|+-|+|
T Consensus 121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~----vvNvvPVIakaD 195 (336)
T KOG1547|consen 121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE----VVNVVPVIAKAD 195 (336)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh----hheeeeeEeecc
Confidence 11112222333 4456666655432 222221 22223322 456788888999
Q ss_pred CCC--CCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028294 123 LAH--RRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 123 l~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
... ++..-.+.+++-...+++.+++-.+.+.+.
T Consensus 196 tlTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ 230 (336)
T KOG1547|consen 196 TLTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDL 230 (336)
T ss_pred cccHHHHHHHHHHHHHHHHhcCcccccccccccch
Confidence 632 111112233444455788888876666543
No 323
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.02 E-value=9.9e-10 Score=85.30 Aligned_cols=81 Identities=21% Similarity=0.146 Sum_probs=55.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCccchh----
Q 028294 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQESFR---- 69 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~---- 69 (211)
|+++|.|++|||||+|+|++........+.++.+.....+.+.+. ...+.++|+||.-.-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 579999999999999999988775444454454555544555443 2358999999943211
Q ss_pred h---chHHHhccccEEEEEEECC
Q 028294 70 S---ITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 70 ~---~~~~~~~~~d~~i~v~d~~ 89 (211)
. .....++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 2223457899999999863
No 324
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.02 E-value=3.5e-09 Score=78.44 Aligned_cols=93 Identities=24% Similarity=0.171 Sum_probs=65.2
Q ss_pred hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcC
Q 028294 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENG 142 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~ 142 (211)
+...+..+++.+|++++|+|+.++.. .|...+... ..+.|+++|+||+|+..... ..+....+. ...+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcC
Confidence 56778888999999999999987542 122222222 23689999999999964332 233333333 2233
Q ss_pred C---cEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 143 L---LFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 143 ~---~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
. .++.+||+++.|++++++.|.+.+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3 589999999999999999988776
No 325
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.00 E-value=5.7e-09 Score=85.66 Aligned_cols=115 Identities=20% Similarity=0.222 Sum_probs=76.9
Q ss_pred EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHH-------HHHHHHHHHHHHHhc----CCCCeEEEEEecC
Q 028294 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET-------FNHLSSWLEDARQHA----NPNMSIMLVGNKC 121 (211)
Q Consensus 53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~----~~~~p~ivv~nK~ 121 (211)
....+.++|++|+...+.-|..++..++++|||+++++.+. ...+..-+..+.... -.+.|++|++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 44567899999999999999999999999999999865322 122333333332222 2589999999999
Q ss_pred CCCC-----C-----------C--CCCHHHHHHHHHH------------cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 122 DLAH-----R-----------R--AVSKEEGEQFAKE------------NGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 122 Dl~~-----~-----------~--~~~~~~~~~~~~~------------~~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
|+-. . . ....+.+..+... ..+.+..++|.+..++..+|+.+.+.+
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9621 0 1 1234555544443 112366899999999999998887653
No 326
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=6.7e-09 Score=82.51 Aligned_cols=161 Identities=17% Similarity=0.249 Sum_probs=95.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC---------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh-----
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----- 70 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----- 70 (211)
..++++++|+.|.|||||+|.|+...+... ...+.........+.-++..++|.+.||||....-.
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 358999999999999999999987754432 122334445555555578888999999999321110
Q ss_pred --------------------chHHHhc--cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028294 71 --------------------ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 71 --------------------~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 128 (211)
+.+..+. .+|+++|.+...... +..+. +..+.... ..+.+|-|+.|+|.....+
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~D--i~~Mk~l~-~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLD--IEFMKKLS-KKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhh--HHHHHHHh-ccccccceeeccccCCHHH
Confidence 1111222 466888888765431 11111 12222222 3788999999999854322
Q ss_pred C--CHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028294 129 V--SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 129 ~--~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 172 (211)
. ....+.+....+++++|....-.. ++.+....+.+....|
T Consensus 176 l~~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~~P 218 (366)
T KOG2655|consen 176 LNQFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKSSIP 218 (366)
T ss_pred HHHHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhhcCC
Confidence 1 223345566667888776554433 4444455555555444
No 327
>PRK12289 GTPase RsgA; Reviewed
Probab=98.98 E-value=2.2e-09 Score=86.31 Aligned_cols=91 Identities=22% Similarity=0.227 Sum_probs=66.2
Q ss_pred hchHHHhccccEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEE
Q 028294 70 SITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEA 148 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (211)
.+....+.++|.+++|+|+.++. ....+..|+..... .+.|+++|+||+|+..... .+.........++.++++
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~i 155 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLFI 155 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 34555688999999999998865 34455666655432 3799999999999964221 122233445678899999
Q ss_pred eCCCCCCHHHHHHHHHH
Q 028294 149 SARTAQNVEEAFIKTAA 165 (211)
Q Consensus 149 s~~~~~~i~~~~~~i~~ 165 (211)
|++++.|++++++.|..
T Consensus 156 SA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 156 SVETGIGLEALLEQLRN 172 (352)
T ss_pred EcCCCCCHHHHhhhhcc
Confidence 99999999999888754
No 328
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.98 E-value=3.1e-09 Score=87.50 Aligned_cols=161 Identities=21% Similarity=0.387 Sum_probs=116.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+|+.|||..++|||+|+++++.+.+.+...+- +..+... +.+++....+.+.|.+|.. ...|...+|++|||
T Consensus 30 elk~givg~~~sgktalvhr~ltgty~~~e~~e-~~~~kkE-~vv~gqs~lLlirdeg~~~-----~aQft~wvdavIfv 102 (749)
T KOG0705|consen 30 ELKLGIVGTSQSGKTALVHRYLTGTYTQDESPE-GGRFKKE-VVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAVVFV 102 (749)
T ss_pred hhheeeeecccCCceeeeeeeccceeccccCCc-Cccceee-EEeeccceEeeeecccCCc-----hhhhhhhccceEEE
Confidence 479999999999999999999988886655444 4455443 5577777778888888832 33455679999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCC--CCCCHHHHHHH-HHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 86 YDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHR--RAVSKEEGEQF-AKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
|.+.+..+++.+..+...+..+.. ...|+++++++.-.... +.+......++ +......+|++++..|.+++.+|+
T Consensus 103 f~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf~ 182 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVFQ 182 (749)
T ss_pred EEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHHH
Confidence 999999999888777666654432 46777777776544322 22223333333 333556799999999999999999
Q ss_pred HHHHHHHHHHhh
Q 028294 162 KTAAKILQNIQE 173 (211)
Q Consensus 162 ~i~~~~~~~~~~ 173 (211)
.+..++......
T Consensus 183 ~~~~k~i~~~~~ 194 (749)
T KOG0705|consen 183 EVAQKIVQLRKY 194 (749)
T ss_pred HHHHHHHHHHhh
Confidence 988887776543
No 329
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.95 E-value=2.4e-09 Score=83.24 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=40.2
Q ss_pred CCeEEEEEecCCCCCCCCCCHHHHHHHHHH--cCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 111 NMSIMLVGNKCDLAHRRAVSKEEGEQFAKE--NGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 111 ~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
..+-++++||+|+........+...+..+. .+.+++.+|+++|+|++++.++|.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 456699999999965322223334444433 35789999999999999999988763
No 330
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.93 E-value=6.6e-09 Score=80.02 Aligned_cols=111 Identities=15% Similarity=0.080 Sum_probs=68.5
Q ss_pred EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHH
Q 028294 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 133 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 133 (211)
.+.+.|++|.|--. .--....-+|.+++|.-..-.+..+.+.. .+.+.. -++|+||.|...... ...+
T Consensus 143 G~DvIIVETVGvGQ---sev~I~~~aDt~~~v~~pg~GD~~Q~iK~---GimEia-----Di~vINKaD~~~A~~-a~r~ 210 (323)
T COG1703 143 GYDVIIVETVGVGQ---SEVDIANMADTFLVVMIPGAGDDLQGIKA---GIMEIA-----DIIVINKADRKGAEK-AARE 210 (323)
T ss_pred CCCEEEEEecCCCc---chhHHhhhcceEEEEecCCCCcHHHHHHh---hhhhhh-----heeeEeccChhhHHH-HHHH
Confidence 45678888887532 22344556898888887655544443332 333322 389999999643211 1111
Q ss_pred HHH---HH----HH--cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhccc
Q 028294 134 GEQ---FA----KE--NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGAL 176 (211)
Q Consensus 134 ~~~---~~----~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~~~ 176 (211)
... .. .. +.-+++.+||.+|.|++++++.|.+.....-..+..
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg~~ 262 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESGLF 262 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHHHhcccc
Confidence 111 11 11 234699999999999999999998887666665544
No 331
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.91 E-value=5.5e-09 Score=82.20 Aligned_cols=88 Identities=18% Similarity=0.127 Sum_probs=66.8
Q ss_pred hHHHhccccEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeC
Q 028294 72 TRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA 150 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~ 150 (211)
.+.++.++|.+++|+|+.++. ++..+..|+..+... +.|+++|+||+|+.+.. ............+.+++.+|+
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA 146 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSA 146 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEEC
Confidence 344588999999999999987 777788887766543 78999999999996531 112223334457889999999
Q ss_pred CCCCCHHHHHHHHH
Q 028294 151 RTAQNVEEAFIKTA 164 (211)
Q Consensus 151 ~~~~~i~~~~~~i~ 164 (211)
+++.|+++++..|.
T Consensus 147 ~~g~gi~~L~~~L~ 160 (287)
T cd01854 147 KTGEGLDELREYLK 160 (287)
T ss_pred CCCccHHHHHhhhc
Confidence 99999999887664
No 332
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.91 E-value=6.8e-10 Score=84.17 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=65.0
Q ss_pred EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028294 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 134 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 134 (211)
+.+.|++|.|-- +.-.....-+|.+++|....-.+..+.+.. .+.+. .-++|+||+|.+.... ...+.
T Consensus 122 ~D~IiiETVGvG---QsE~~I~~~aD~~v~v~~Pg~GD~iQ~~Ka---GimEi-----aDi~vVNKaD~~gA~~-~~~~l 189 (266)
T PF03308_consen 122 FDVIIIETVGVG---QSEVDIADMADTVVLVLVPGLGDEIQAIKA---GIMEI-----ADIFVVNKADRPGADR-TVRDL 189 (266)
T ss_dssp -SEEEEEEESSS---THHHHHHTTSSEEEEEEESSTCCCCCTB-T---THHHH------SEEEEE--SHHHHHH-HHHHH
T ss_pred CCEEEEeCCCCC---ccHHHHHHhcCeEEEEecCCCccHHHHHhh---hhhhh-----ccEEEEeCCChHHHHH-HHHHH
Confidence 557788887742 223344567999999998766554333322 22222 2399999999643221 12222
Q ss_pred HHHHHH-------cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 028294 135 EQFAKE-------NGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177 (211)
Q Consensus 135 ~~~~~~-------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~~~~ 177 (211)
+..... +..+++.+||.++.|++++++.|.+........+...
T Consensus 190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l~~sg~~~ 239 (266)
T PF03308_consen 190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYLKESGELE 239 (266)
T ss_dssp HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHcchHH
Confidence 222222 1247999999999999999999887766555544433
No 333
>PRK12288 GTPase RsgA; Reviewed
Probab=98.91 E-value=7e-09 Score=83.42 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=66.2
Q ss_pred HhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC-CHHHHHHHHHHcCCcEEEEeCCCC
Q 028294 75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKENGLLFLEASARTA 153 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~ 153 (211)
+..++|.+++|+++....++..+..|+..... .+.|+++|+||+|+...... ............+++++.+|++++
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg 193 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG 193 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 35679999999999877788888888765542 37899999999999643211 112223344457889999999999
Q ss_pred CCHHHHHHHHHH
Q 028294 154 QNVEEAFIKTAA 165 (211)
Q Consensus 154 ~~i~~~~~~i~~ 165 (211)
.|++++++.|..
T Consensus 194 ~GideL~~~L~~ 205 (347)
T PRK12288 194 EGLEELEAALTG 205 (347)
T ss_pred cCHHHHHHHHhh
Confidence 999999988754
No 334
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.90 E-value=5.8e-09 Score=74.74 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=64.3
Q ss_pred hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEE
Q 028294 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLE 147 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 147 (211)
+..+...+..++|++|+|+|+.++...... .+...+. ..+.|+++++||+|+..... ......+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence 345677888899999999999876432221 1211121 23689999999999853211 11122233345678999
Q ss_pred EeCCCCCCHHHHHHHHHHHHH
Q 028294 148 ASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 148 ~s~~~~~~i~~~~~~i~~~~~ 168 (211)
+|++++.|++++++.+.+.+.
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEccccccHHHHHHHHHHHHh
Confidence 999999999999988877764
No 335
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=7.3e-08 Score=81.44 Aligned_cols=143 Identities=20% Similarity=0.186 Sum_probs=88.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEE--------------------------------------
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR-------------------------------------- 46 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------------------------------------- 46 (211)
...||++.|..++||||++|+++..+.-+.....++.-+...
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 467999999999999999999987665444332221111111
Q ss_pred -----EEEECCE-----EEEEEEEeCCCc---cchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe
Q 028294 47 -----MVTIDGR-----PIKLQIWDTAGQ---ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS 113 (211)
Q Consensus 47 -----~~~~~~~-----~~~l~l~D~~G~---~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p 113 (211)
.+-.+.. .-.+.+.|.||. ....+-.......+|++|+|.++.+..+.... .++....+ .+..
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~---~Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE---EKPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc---cCCc
Confidence 0000111 014678899994 34555566778899999999999876543332 23222222 2455
Q ss_pred EEEEEecCCCCCCCCCCHHHHHHHHHHcCC--------cEEEEeCC
Q 028294 114 IMLVGNKCDLAHRRAVSKEEGEQFAKENGL--------LFLEASAR 151 (211)
Q Consensus 114 ~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~ 151 (211)
++|+.||+|....++.-.+++.....+..+ .+++||++
T Consensus 264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 777789999977665555665554444322 37888865
No 336
>PRK00098 GTPase RsgA; Reviewed
Probab=98.87 E-value=9.2e-09 Score=81.40 Aligned_cols=87 Identities=21% Similarity=0.180 Sum_probs=63.7
Q ss_pred HHHhccccEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC
Q 028294 73 RSYYRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR 151 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 151 (211)
+.++.++|.+++|+|+.++..... +..|+..+.. .+.|+++|+||+|+.+... ..+.........+++++++|++
T Consensus 75 q~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~ 150 (298)
T PRK00098 75 KLIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAK 150 (298)
T ss_pred cceeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCC
Confidence 334689999999999988765433 4566655543 3789999999999963221 1223444555678899999999
Q ss_pred CCCCHHHHHHHH
Q 028294 152 TAQNVEEAFIKT 163 (211)
Q Consensus 152 ~~~~i~~~~~~i 163 (211)
++.|++++++.+
T Consensus 151 ~g~gi~~L~~~l 162 (298)
T PRK00098 151 EGEGLDELKPLL 162 (298)
T ss_pred CCccHHHHHhhc
Confidence 999999988765
No 337
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.84 E-value=9.1e-09 Score=72.51 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=39.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~ 65 (211)
+++++|.+|+|||||+|+|++........ ..+.+.....+.++. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSA-TPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCC-CCCcccceEEEEeCC---CEEEEECCCc
Confidence 79999999999999999999887643222 224444455555554 4689999995
No 338
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.78 E-value=2.4e-08 Score=72.67 Aligned_cols=56 Identities=27% Similarity=0.332 Sum_probs=41.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G 64 (211)
..++++++|.+++|||||+|+|.+......... .|.+.....+.++. .+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~-pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGAT-PGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCC-CCeEcceEEEEeCC---CEEEEECcC
Confidence 347999999999999999999998765443322 35555555555543 467999999
No 339
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.77 E-value=3.1e-08 Score=71.08 Aligned_cols=56 Identities=21% Similarity=0.271 Sum_probs=39.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G 64 (211)
..++|+++|.+|+|||||+|+|.+.........+ |.+.....+..+. .+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~-g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP-GETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC-CeeEeEEEEEcCC---CEEEEECcC
Confidence 3578999999999999999999987654433322 4444444444432 256999999
No 340
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.76 E-value=4.9e-08 Score=69.89 Aligned_cols=114 Identities=17% Similarity=0.069 Sum_probs=66.0
Q ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028294 80 AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159 (211)
Q Consensus 80 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 159 (211)
|++++|+|+.++.+... .++.. ......++|+++|+||+|+.+.... .+....+....+..++.+|++++.|++++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L 76 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK 76 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence 78999999988754332 22221 1222247999999999999542211 11112232234556899999999999999
Q ss_pred HHHHHHHHHHHHhhccc-cccCCCCCeEEeeccCCCCCC
Q 028294 160 FIKTAAKILQNIQEGAL-DAVNDQSGIKVGYGRGQGPSG 197 (211)
Q Consensus 160 ~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 197 (211)
.+.+.+......+.... ........+.+-.-++.|+++
T Consensus 77 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKst 115 (155)
T cd01849 77 ESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSS 115 (155)
T ss_pred HHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHH
Confidence 99887765433322111 112233445554445444443
No 341
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.72 E-value=7.1e-08 Score=70.22 Aligned_cols=92 Identities=14% Similarity=0.063 Sum_probs=61.3
Q ss_pred hhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEE
Q 028294 69 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEA 148 (211)
Q Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (211)
.......+.++|.+++|+|+.++...... .+... . .+.|+++++||+|+.+... .....++....+..++.+
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~---~--~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~~~~~vi~i 81 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI---L--GNKPRIIVLNKADLADPKK--TKKWLKYFESKGEKVLFV 81 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH---h--cCCCEEEEEehhhcCChHH--HHHHHHHHHhcCCeEEEE
Confidence 34556778899999999999876432111 11111 1 2579999999999953211 111222333344568999
Q ss_pred eCCCCCCHHHHHHHHHHHHH
Q 028294 149 SARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 149 s~~~~~~i~~~~~~i~~~~~ 168 (211)
|++++.|++++.+.+.+.+.
T Consensus 82 Sa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 82 NAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred ECCCcccHHHHHHHHHHHHH
Confidence 99999999999988887764
No 342
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.70 E-value=9.6e-08 Score=77.53 Aligned_cols=95 Identities=26% Similarity=0.319 Sum_probs=69.6
Q ss_pred ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHH----HHHHH
Q 028294 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE----QFAKE 140 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~ 140 (211)
.+.+..+...++..++++++|+|+.+.. ..|...+..... +.|+++|+||+|+.... ...+... +++..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-GNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-CCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence 5677788888888999999999997754 234455544432 67999999999996532 2333333 34555
Q ss_pred cCC---cEEEEeCCCCCCHHHHHHHHHHH
Q 028294 141 NGL---LFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 141 ~~~---~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
.++ .++.+||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 666 48999999999999999988654
No 343
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.9e-07 Score=73.92 Aligned_cols=121 Identities=14% Similarity=0.201 Sum_probs=78.1
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe-eeEEEEEEEEE------CCEE---------------------
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-GVEFGARMVTI------DGRP--------------------- 54 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~--------------------- 54 (211)
++...-|+++|+-..||||||+.|+.+.++.....+- +++.....+.- ++..
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 4566789999999999999999999998865433221 22222221111 1110
Q ss_pred ------------EEEEEEeCCCcc-----------chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Q 028294 55 ------------IKLQIWDTAGQE-----------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN 111 (211)
Q Consensus 55 ------------~~l~l~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 111 (211)
-.+.++||||.- .|.....-+...+|.+|++||+...+.-......+. ....+.
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~---aLkG~E 211 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVID---ALKGHE 211 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHH---HhhCCc
Confidence 137899999932 233456667889999999999866443333333333 334446
Q ss_pred CeEEEEEecCCCCCC
Q 028294 112 MSIMLVGNKCDLAHR 126 (211)
Q Consensus 112 ~p~ivv~nK~Dl~~~ 126 (211)
-.+-||+||+|..+.
T Consensus 212 dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDT 226 (532)
T ss_pred ceeEEEeccccccCH
Confidence 678899999998653
No 344
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.69 E-value=1e-07 Score=68.40 Aligned_cols=91 Identities=15% Similarity=0.086 Sum_probs=56.7
Q ss_pred HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Q 028294 74 SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA 153 (211)
Q Consensus 74 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 153 (211)
..+..+|++++|+|+.++.... ...+...+.. ...+.|+++|+||+|+.+.... ......+........+.+|++.+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~ 80 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred HhhhhCCEEEEEEECCCCcccc-CHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecccc
Confidence 3567899999999999863211 1122222222 2335899999999999542211 11122222222223578999999
Q ss_pred CCHHHHHHHHHHHH
Q 028294 154 QNVEEAFIKTAAKI 167 (211)
Q Consensus 154 ~~i~~~~~~i~~~~ 167 (211)
.|++++++.+.+..
T Consensus 81 ~~~~~L~~~l~~~~ 94 (157)
T cd01858 81 FGKGSLIQLLRQFS 94 (157)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999988887654
No 345
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.68 E-value=5.5e-08 Score=74.15 Aligned_cols=156 Identities=16% Similarity=0.123 Sum_probs=93.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCC----------ccchhhch
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSIT 72 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G----------~~~~~~~~ 72 (211)
+.++.++++|.+++|||+|+|-++..+... ...+..+.+..+...++.. .+.+.|.|| ...+....
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHhH
Confidence 456899999999999999999998655433 2222556666665555543 567899999 23455566
Q ss_pred HHHhccccE---EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC------CCCC-----HHHHHHHH
Q 028294 73 RSYYRGAAG---ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR------RAVS-----KEEGEQFA 138 (211)
Q Consensus 73 ~~~~~~~d~---~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------~~~~-----~~~~~~~~ 138 (211)
..|+.+-+- +++.+|++-+.. ..+. ..+.-..+.++|+.+|+||+|..-. ++.. ....-+.+
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~--~~D~--~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~ 286 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQ--PTDN--PEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGV 286 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCC--CCCh--HHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccccc
Confidence 777766553 444455544311 1111 1112222248999999999997421 1110 01111111
Q ss_pred HHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 139 KENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 139 ~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
.....+.+.+|+.++.|++.++-.+.+.
T Consensus 287 f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 287 FLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred eeccCCceeeecccccCceeeeeehhhh
Confidence 1223456779999999999887666543
No 346
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.66 E-value=8.3e-08 Score=69.86 Aligned_cols=57 Identities=26% Similarity=0.372 Sum_probs=41.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~ 65 (211)
..++++++|.+++|||||+|+|.+..+.... ...+.+.....+.++ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVG-NKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4578999999999999999999987764322 222445555545554 34689999994
No 347
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=2.4e-07 Score=72.60 Aligned_cols=170 Identities=21% Similarity=0.166 Sum_probs=111.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC----------CCCC----CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK----------RFQP----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~ 71 (211)
.++|.-+|+..-|||||.-++..- ++.+ ......|+++...++.++-....+.-.|+||+..|-.+
T Consensus 54 HvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKN 133 (449)
T KOG0460|consen 54 HVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKN 133 (449)
T ss_pred cccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHH
Confidence 468899999999999998877521 1111 12234588888888888877888889999999998888
Q ss_pred hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC---CHHHHHHHHHHcCC-----
Q 028294 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV---SKEEGEQFAKENGL----- 143 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~----- 143 (211)
...-..+.|+.|+|+.++|..- .+.+.-+...++.. -..++|++||.|+.++.++ -.-+++++..++++
T Consensus 134 MItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQVG--V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~ 210 (449)
T KOG0460|consen 134 MITGAAQMDGAILVVAATDGPM-PQTREHLLLARQVG--VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNT 210 (449)
T ss_pred hhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHcC--CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 7777889999999999998532 22222222223322 2457888999999754332 12345566666554
Q ss_pred cEEEEeCCC---C----CCHHHHHHHHHHHHHHHHhhcccccc
Q 028294 144 LFLEASART---A----QNVEEAFIKTAAKILQNIQEGALDAV 179 (211)
Q Consensus 144 ~~~~~s~~~---~----~~i~~~~~~i~~~~~~~~~~~~~~~~ 179 (211)
|++.-||+- + .|. +....|++.+.+..+.++....
T Consensus 211 PvI~GSAL~ALeg~~peig~-~aI~kLldavDsyip~P~R~~~ 252 (449)
T KOG0460|consen 211 PVIRGSALCALEGRQPEIGL-EAIEKLLDAVDSYIPTPERDLD 252 (449)
T ss_pred CeeecchhhhhcCCCccccH-HHHHHHHHHHhccCCCcccccC
Confidence 588777653 3 233 2345666666665555444433
No 348
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.66 E-value=1.4e-07 Score=75.86 Aligned_cols=83 Identities=20% Similarity=0.099 Sum_probs=60.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCccc---
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES--- 67 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~--- 67 (211)
+++.|+|.|++|||||+|.|++... .....+..+.......+.+.+. ...+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998876 5444455445555555555442 23678999999533
Q ss_pred ----hhhchHHHhccccEEEEEEECC
Q 028294 68 ----FRSITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 68 ----~~~~~~~~~~~~d~~i~v~d~~ 89 (211)
........++.+|++++|+++.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223445678999999999974
No 349
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.62 E-value=1.7e-06 Score=71.96 Aligned_cols=135 Identities=21% Similarity=0.317 Sum_probs=84.7
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC------Ce-------------------------------------
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TI------------------------------------- 39 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~------~~------------------------------------- 39 (211)
.+..++|+|||+..+||||.+..+......+.... ++
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 35778999999999999999988864433221110 11
Q ss_pred ---------eeEEEEEE--EEECCEEE-EEEEEeCCCc-------------cchhhchHHHhccccEEEEEEECCCHHHH
Q 028294 40 ---------GVEFGARM--VTIDGRPI-KLQIWDTAGQ-------------ESFRSITRSYYRGAAGALLVYDITRRETF 94 (211)
Q Consensus 40 ---------~~~~~~~~--~~~~~~~~-~l~l~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~~~ 94 (211)
|.+.+... .++.|.++ ++.++|.||. +.......+++.+.+++|+|+--.. .
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---V 461 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---V 461 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---c
Confidence 22222222 33334333 5789999993 2344567889999999999995322 1
Q ss_pred HHHHHHHHHHH-HhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028294 95 NHLSSWLEDAR-QHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE 140 (211)
Q Consensus 95 ~~~~~~~~~~~-~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (211)
+..+.....+. .....+...|+|++|.|+.+....+..-++++...
T Consensus 462 DAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 462 DAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred chhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence 22222222222 22235788999999999987766666767766554
No 350
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.61 E-value=1.6e-07 Score=73.65 Aligned_cols=57 Identities=28% Similarity=0.450 Sum_probs=41.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~ 65 (211)
..++++++|.+|+|||||+|+|.+......... .|.+.....+.++. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~-~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNR-PGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeecceEEEEeCC---CEEEEECCCc
Confidence 458899999999999999999998765443322 24555555555543 3679999996
No 351
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.61 E-value=9.7e-08 Score=70.68 Aligned_cols=56 Identities=21% Similarity=0.278 Sum_probs=39.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCC-------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G 64 (211)
..+++++|.+|+|||||+|+|.+..... ......|++.....+.++. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 3589999999999999999999754311 1122235566666565653 368999999
No 352
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.61 E-value=5e-07 Score=83.51 Aligned_cols=112 Identities=20% Similarity=0.273 Sum_probs=69.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCC------CCCeeeEEEEEEEEECCEEEEEEEEeCCCcc--------chhhchHH
Q 028294 9 YIIIGDTGVGKSCLLLQFTDKRFQPVH------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE--------SFRSITRS 74 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~--------~~~~~~~~ 74 (211)
.+|+|++|+||||+++.- +..++-.. ...++.+.... +.+.+. -.++||+|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~-wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCD-WWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccc-eEecCC---EEEEcCCCccccCCCcccccHHHHHH
Confidence 579999999999999876 33332211 11112222111 223332 3489999921 12233444
Q ss_pred Hh---------ccccEEEEEEECCCH-----HH----HHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 75 YY---------RGAAGALLVYDITRR-----ET----FNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 75 ~~---------~~~d~~i~v~d~~~~-----~~----~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
++ +..|++|+++|+.+- +. ...++..++++....+...|++|+++|+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 43 568999999998652 11 13455666777777778999999999999854
No 353
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.60 E-value=2.7e-08 Score=73.95 Aligned_cols=125 Identities=17% Similarity=0.197 Sum_probs=81.1
Q ss_pred EEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHH-------HHH---HHHHHHHHhc-CCCCeEEE
Q 028294 48 VTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFN-------HLS---SWLEDARQHA-NPNMSIML 116 (211)
Q Consensus 48 ~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~-------~~~---~~~~~~~~~~-~~~~p~iv 116 (211)
+.++-.++.+.+.|.+|+..-+.-|...+.++-.++|++.++..+... .+. .++..+..+. -++.++|+
T Consensus 192 ypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIl 271 (359)
T KOG0085|consen 192 YPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 271 (359)
T ss_pred cCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEE
Confidence 344555667889999999988889999999998888888776543221 111 1112221111 15889999
Q ss_pred EEecCCCCCCCCC----------------CHHHHHHHHHHc----C------CcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028294 117 VGNKCDLAHRRAV----------------SKEEGEQFAKEN----G------LLFLEASARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 117 v~nK~Dl~~~~~~----------------~~~~~~~~~~~~----~------~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 170 (211)
++||.|+.++..+ ..+.++.+.... + +.-.++.|.+.+||.-+|..+...+++.
T Consensus 272 FLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~ 351 (359)
T KOG0085|consen 272 FLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 351 (359)
T ss_pred EechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence 9999998654222 223334444331 1 1134678889999999999998888776
Q ss_pred Hh
Q 028294 171 IQ 172 (211)
Q Consensus 171 ~~ 172 (211)
+-
T Consensus 352 ~L 353 (359)
T KOG0085|consen 352 NL 353 (359)
T ss_pred hh
Confidence 54
No 354
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.60 E-value=1.8e-07 Score=66.97 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=39.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G 64 (211)
...+++++|.+++|||||+|+|.+..... ..++.+.+.....+..++ .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 45789999999999999999999765332 233445544443333333 478999999
No 355
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.60 E-value=2.3e-07 Score=73.13 Aligned_cols=58 Identities=26% Similarity=0.391 Sum_probs=42.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (211)
..++++++|.+|+|||||+|+|.+........ ..|.|.....+.++. .+.++||||..
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 45899999999999999999999876543332 225555555555543 36799999954
No 356
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=1.6e-08 Score=78.00 Aligned_cols=166 Identities=18% Similarity=0.194 Sum_probs=101.7
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCC---CCCCCCCCeeeEE--E-EEEEEE------------------------
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKR---FQPVHDLTIGVEF--G-ARMVTI------------------------ 50 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~--~-~~~~~~------------------------ 50 (211)
|+..-+++|.-+|+..-||||+++++.+-. |-.+.....+... . .+.+..
T Consensus 33 isRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c 112 (466)
T KOG0466|consen 33 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPC 112 (466)
T ss_pred hhheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCc
Confidence 456678999999999999999999885421 1000000000000 0 000000
Q ss_pred -----CC---EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Q 028294 51 -----DG---RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (211)
Q Consensus 51 -----~~---~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (211)
.+ --..+.|+|+||++...+....-..-.|++++++..+..-...+...-+..+.... =+.++++-||.|
T Consensus 113 ~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiD 190 (466)
T KOG0466|consen 113 DRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKID 190 (466)
T ss_pred ccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhh
Confidence 01 01357899999999888765555556788888888776322222222222222222 356899999999
Q ss_pred CCCCCCC--CHHHHHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 123 LAHRRAV--SKEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 123 l~~~~~~--~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
+..+.+. ..+.+..|... .+.|++++||.-..|++.+.++|...+.
T Consensus 191 li~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 191 LIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 9654332 22344555554 4678999999999999999888887763
No 357
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=7e-08 Score=77.48 Aligned_cols=116 Identities=19% Similarity=0.193 Sum_probs=90.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCC----------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~ 69 (211)
.-+|.++.+-.+||||...|++.-..... ...-.|++++..-++++.+..+++++||||+-.|.
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 34789999999999999999863221110 01123788888888999999999999999999999
Q ss_pred hchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
-.....++-.|+++.|||.+.....+.+.-|++ ..+.+.|-+.++||+|...
T Consensus 117 leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLA 168 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhh
Confidence 889999999999999999987655555556643 3445899999999999754
No 358
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.55 E-value=4e-07 Score=71.36 Aligned_cols=85 Identities=20% Similarity=0.164 Sum_probs=62.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC---------------EEEEEEEEeCCCccc--
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG---------------RPIKLQIWDTAGQES-- 67 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~D~~G~~~-- 67 (211)
..+++.+||.|++|||||+|.|......+.-.|..+++.....+.+.. ....+.++|++|.-.
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 467999999999999999999999988877777767666665555532 234689999999322
Q ss_pred -----hhhchHHHhccccEEEEEEECC
Q 028294 68 -----FRSITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 68 -----~~~~~~~~~~~~d~~i~v~d~~ 89 (211)
.......-++.+|+++.|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 2222334467899999999753
No 359
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.54 E-value=2e-07 Score=74.45 Aligned_cols=57 Identities=23% Similarity=0.379 Sum_probs=46.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (211)
.++++|+|-|++|||||||+|.+.........+ |.|.....+.++.. +.++||||.-
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P-G~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP-GTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC-ceecceEEEEcCCC---eEEecCCCcC
Confidence 478999999999999999999998875444444 88888888877765 6799999954
No 360
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.53 E-value=2.3e-06 Score=65.01 Aligned_cols=86 Identities=16% Similarity=0.081 Sum_probs=53.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC--CCCCCCC---CCeeeEEEEEEEEECCEEEEEEEEeCCCccchh------hchH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHD---LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------SITR 73 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~------~~~~ 73 (211)
...-|.|+|++++|||+|+|.|++. .+..... -|.|+......+. .+....+.++||+|..... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~-~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFK-LGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEecccc-CCCcceEEEEecCCcCccccCchhhhhHH
Confidence 4567899999999999999999988 5543322 1222222221111 1234678999999954322 2223
Q ss_pred HHhcc--ccEEEEEEECCCH
Q 028294 74 SYYRG--AAGALLVYDITRR 91 (211)
Q Consensus 74 ~~~~~--~d~~i~v~d~~~~ 91 (211)
..+.. +|.+|+..+....
T Consensus 85 ~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 85 FALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHhCEEEEeccCccc
Confidence 33334 7888888877653
No 361
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=4.8e-07 Score=77.42 Aligned_cols=118 Identities=17% Similarity=0.191 Sum_probs=86.8
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCC--------------CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--------------PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (211)
|+.+..-+|+++-+..-|||||...|+..... -+...+.|++.....+.+-...+.++++|+||+-
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 45667789999999999999999999754321 1122344666666666666677889999999999
Q ss_pred chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Q 028294 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (211)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (211)
.|.+.......-+|++++++|+...-.-+...-.++-... +...++|+||+|
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~----~~~~~lvinkid 135 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE----GLKPILVINKID 135 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc----cCceEEEEehhh
Confidence 9999999999999999999999875432322222222221 566899999999
No 362
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.52 E-value=7.9e-07 Score=69.70 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=65.7
Q ss_pred CCcc-chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc
Q 028294 63 AGQE-SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN 141 (211)
Q Consensus 63 ~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~ 141 (211)
||+. .........+..+|++++|+|+.++.+... .++..+. .+.|+++|+||+|+.+... .....+.....
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR----GNKPRLIVLNKADLADPAV--TKQWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH----CCCCEEEEEEccccCCHHH--HHHHHHHHHHc
Confidence 5543 223456677889999999999987644222 1111111 2689999999999854211 12222223334
Q ss_pred CCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028294 142 GLLFLEASARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 142 ~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 170 (211)
+.+++.+|++++.|++++.+.+.+.+...
T Consensus 77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 77 GIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 56789999999999999988888776543
No 363
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.50 E-value=1.6e-06 Score=65.77 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=57.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-------hhhchHHHhccc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-------FRSITRSYYRGA 79 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~~ 79 (211)
.++.++|.|.+||||++..|.+...........+.+.-...+.+++. ++++.|.||.-+ ......+..+.+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~ga--Kiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGA--KIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEecccc--ceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 48899999999999999999987655444444344443444445554 467899999432 122344556778
Q ss_pred cEEEEEEECCCHHH
Q 028294 80 AGALLVYDITRRET 93 (211)
Q Consensus 80 d~~i~v~d~~~~~~ 93 (211)
+.+++|.|+..|-+
T Consensus 138 nli~~vld~~kp~~ 151 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLS 151 (358)
T ss_pred cEEEEEeeccCccc
Confidence 88999999765433
No 364
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.49 E-value=4.7e-07 Score=68.60 Aligned_cols=121 Identities=15% Similarity=0.189 Sum_probs=76.1
Q ss_pred ECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHH-------HHHHHH---HHHHHHHhc-CCCCeEEEEE
Q 028294 50 IDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET-------FNHLSS---WLEDARQHA-NPNMSIMLVG 118 (211)
Q Consensus 50 ~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~---~~~~~~~~~-~~~~p~ivv~ 118 (211)
+.-..+.++.+|.+|+...+.-|...+..+.++|||+..+.... ...++. ++..++... .....+|+++
T Consensus 197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFL 276 (379)
T KOG0099|consen 197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFL 276 (379)
T ss_pred EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEe
Confidence 33344568899999999999999999999999999998865321 122322 222222211 1357799999
Q ss_pred ecCCCCCCC----------------------------CCCHHH--HHHHHHH-------------cCCcEEEEeCCCCCC
Q 028294 119 NKCDLAHRR----------------------------AVSKEE--GEQFAKE-------------NGLLFLEASARTAQN 155 (211)
Q Consensus 119 nK~Dl~~~~----------------------------~~~~~~--~~~~~~~-------------~~~~~~~~s~~~~~~ 155 (211)
||.|+.+++ .....- ++.+.+. +-+.+.++.|.+.++
T Consensus 277 NKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTen 356 (379)
T KOG0099|consen 277 NKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTEN 356 (379)
T ss_pred cHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHH
Confidence 999973220 011111 1111111 122356788999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKILQN 170 (211)
Q Consensus 156 i~~~~~~i~~~~~~~ 170 (211)
|..+|+.....+.+.
T Consensus 357 IrrVFnDcrdiIqr~ 371 (379)
T KOG0099|consen 357 IRRVFNDCRDIIQRM 371 (379)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999876666544
No 365
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.45 E-value=6.8e-07 Score=62.94 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=52.3
Q ss_pred hHHHhccccEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Q 028294 72 TRSYYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (211)
....+..+|++++|+|+.++.+.. .+..++.. . ..++|+++++||+|+.+... .....+.....+..++++|
T Consensus 5 ~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iS 78 (141)
T cd01857 5 LWRVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFS 78 (141)
T ss_pred HHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence 345678899999999998876533 33333322 2 14789999999999854221 2233455555677899999
Q ss_pred CCCCCC
Q 028294 150 ARTAQN 155 (211)
Q Consensus 150 ~~~~~~ 155 (211)
+.++.+
T Consensus 79 a~~~~~ 84 (141)
T cd01857 79 ALKENA 84 (141)
T ss_pred ecCCCc
Confidence 997653
No 366
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.45 E-value=1.9e-06 Score=68.75 Aligned_cols=152 Identities=16% Similarity=0.116 Sum_probs=92.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--------------CeeeEEEEEEEEECCE----------------
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--------------TIGVEFGARMVTIDGR---------------- 53 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~---------------- 53 (211)
+..+.+.+.|+...|||||+-.|..+..+...-. -.+.+.+...+.+++.
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 4568899999999999999888764443221111 1122333333333321
Q ss_pred -----EEEEEEEeCCCccchhhc--hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028294 54 -----PIKLQIWDTAGQESFRSI--TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 54 -----~~~l~l~D~~G~~~~~~~--~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 126 (211)
+..+.|+|+.|++.|-.. .-.+-.+.|..++++.+++..+- +......+... -+.|++++++|+|+.++
T Consensus 195 vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~--~tkEHLgi~~a--~~lPviVvvTK~D~~~d 270 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK--MTKEHLGIALA--MELPVIVVVTKIDMVPD 270 (527)
T ss_pred hhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch--hhhHhhhhhhh--hcCCEEEEEEecccCcH
Confidence 134789999999988763 33445789999999999886431 11111122111 28999999999999654
Q ss_pred CCCC--HHHHHHH----------------------HHH--c-CCcEEEEeCCCCCCHHHH
Q 028294 127 RAVS--KEEGEQF----------------------AKE--N-GLLFLEASARTAQNVEEA 159 (211)
Q Consensus 127 ~~~~--~~~~~~~----------------------~~~--~-~~~~~~~s~~~~~~i~~~ 159 (211)
.... .+++... +-+ . =+|++.+|+.+|+|++-+
T Consensus 271 dr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL 330 (527)
T COG5258 271 DRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLL 330 (527)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHH
Confidence 2111 1122111 111 1 247899999999997654
No 367
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.44 E-value=1.1e-05 Score=65.54 Aligned_cols=161 Identities=17% Similarity=0.220 Sum_probs=90.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------CCC----Ceee---EEEEEEEEE-CCEEEEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------HDL----TIGV---EFGARMVTI-DGRPIKLQI 59 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----------------~~~----~~~~---~~~~~~~~~-~~~~~~l~l 59 (211)
..+-|.||||.-+|||||++||...-..+. ... |+.+ ......+.+ ++..+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 346799999999999999999953321111 000 1111 111223444 577889999
Q ss_pred EeCCCcc-------------------chhh----------chHHHhcc-cc-EEEEEEECC--C--HHHH-HHHHHHHHH
Q 028294 60 WDTAGQE-------------------SFRS----------ITRSYYRG-AA-GALLVYDIT--R--RETF-NHLSSWLED 103 (211)
Q Consensus 60 ~D~~G~~-------------------~~~~----------~~~~~~~~-~d-~~i~v~d~~--~--~~~~-~~~~~~~~~ 103 (211)
+|+.|.. .|.. -++..++. +. ++++.-|-+ + ++.+ ..-...+.+
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 9999811 0000 01111111 22 455544432 2 2333 223344555
Q ss_pred HHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028294 104 ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 104 ~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 172 (211)
+... ++|++|++|-.+-.. ....++...+..+++++++.+++..= .-+++ ..|++.++..++
T Consensus 176 Lk~i---gKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~l-~~~DI-~~Il~~vLyEFP 237 (492)
T PF09547_consen 176 LKEI---GKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQL-REEDI-TRILEEVLYEFP 237 (492)
T ss_pred HHHh---CCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHHc-CHHHH-HHHHHHHHhcCC
Confidence 5554 899999999887532 34456777788889999998887652 33343 345555555444
No 368
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.43 E-value=7.3e-07 Score=63.79 Aligned_cols=56 Identities=27% Similarity=0.358 Sum_probs=37.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G 64 (211)
...+++++|.+|+|||||+|.|.+.......... +.+.....+.++ ..+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~-~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVP-GTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCC-CcccceEEEEec---CCEEEEECCC
Confidence 4578999999999999999999986543222111 222223333333 2477999999
No 369
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.43 E-value=1.8e-06 Score=62.05 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=37.2
Q ss_pred EEEEEEEeCCCccchhhchHH--------HhccccEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Q 028294 54 PIKLQIWDTAGQESFRSITRS--------YYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDL 123 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 123 (211)
..+..+.|++|.......... ..-..|.+++++|+..... +.+...+...+... -+|++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~a------d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFA------DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHC------CEEEEecccC
Confidence 346678999996544443322 2235778999999765322 11222233333322 2779999996
No 370
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.40 E-value=3.3e-07 Score=65.43 Aligned_cols=58 Identities=22% Similarity=0.263 Sum_probs=33.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCC------CCeeeEEEEEEEEECCEEEEEEEEeCCCccc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD------LTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 67 (211)
-.++++|++|||||||+|.|.+........ .-.-++.....+.++... .+.||||...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCc
Confidence 468999999999999999999763222110 100112223334554433 4889999643
No 371
>PRK12288 GTPase RsgA; Reviewed
Probab=98.35 E-value=9.6e-07 Score=71.17 Aligned_cols=58 Identities=28% Similarity=0.399 Sum_probs=36.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe----e--eEEEEEEEEECCEEEEEEEEeCCCccchh
Q 028294 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI----G--VEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~l~l~D~~G~~~~~ 69 (211)
++++|++|||||||+|+|++.........+. | ++.....+.+++.. .++||||...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 7899999999999999999765432211110 0 22233334554332 389999976544
No 372
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.34 E-value=3.8e-06 Score=66.21 Aligned_cols=101 Identities=17% Similarity=0.186 Sum_probs=66.7
Q ss_pred CCCccc-hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028294 62 TAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE 140 (211)
Q Consensus 62 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (211)
+||+.. ........+..+|++++|+|+.++.+... .++.... .+.|+++|+||+|+.+... .+....+...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 466542 23346677889999999999987644222 1122211 1689999999999853211 1222233334
Q ss_pred cCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028294 141 NGLLFLEASARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 141 ~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 170 (211)
.+.+++.+|++++.|++++.+.+.+.+...
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 467789999999999999998887776544
No 373
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.33 E-value=8.4e-06 Score=65.03 Aligned_cols=144 Identities=22% Similarity=0.188 Sum_probs=79.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCC-------CCC--------------CeeeEEEEEEEEE-------------C
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-------HDL--------------TIGVEFGARMVTI-------------D 51 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~-------~~~--------------~~~~~~~~~~~~~-------------~ 51 (211)
.-.|+++|++|+||||++..|...-.... .+. ..+..+....... .
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~ 193 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK 193 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999998853211000 000 0011111110000 1
Q ss_pred CEEEEEEEEeCCCccchhhc----hHHH--------hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEe
Q 028294 52 GRPIKLQIWDTAGQESFRSI----TRSY--------YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGN 119 (211)
Q Consensus 52 ~~~~~l~l~D~~G~~~~~~~----~~~~--------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~n 119 (211)
...+.+.|+||||....... ...+ ....+..++|+|++... ..+... ..+... -.+.-+++|
T Consensus 194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~a-~~f~~~---~~~~giIlT 267 (318)
T PRK10416 194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQA-KAFHEA---VGLTGIILT 267 (318)
T ss_pred hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHHH-HHHHhh---CCCCEEEEE
Confidence 13457889999996532221 1111 23467889999998642 222221 222211 234578899
Q ss_pred cCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 120 KCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 120 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
|.|.... .-.+...+...+.|+..++ +|++++++-.
T Consensus 268 KlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 268 KLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 9995432 1234445566799988887 7777776643
No 374
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.9e-05 Score=66.19 Aligned_cols=135 Identities=17% Similarity=0.180 Sum_probs=78.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
.++-++|+||+|+||||||+.|...-.........| .. .-+.+...++.+.++|.+ ..+ .....+-+|.+++
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----Pi-TvvsgK~RRiTflEcp~D--l~~-miDvaKIaDLVlL 139 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PI-TVVSGKTRRITFLECPSD--LHQ-MIDVAKIADLVLL 139 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ce-EEeecceeEEEEEeChHH--HHH-HHhHHHhhheeEE
Confidence 567788999999999999998874321111111101 01 124667788999999942 222 4456677999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCCCHHHHHHHHH-------HcCCcEEEEeCCC
Q 028294 85 VYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAVSKEEGEQFAK-------ENGLLFLEASART 152 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~~~~~~s~~~ 152 (211)
++|.+=.-..+.+ .+++.+..+ +.| ++-|+++.|+.... -....+....+ ..|+.+|.+|-..
T Consensus 140 lIdgnfGfEMETm-EFLnil~~H---GmPrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 140 LIDGNFGFEMETM-EFLNILISH---GMPRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred EeccccCceehHH-HHHHHHhhc---CCCceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 9998654222222 233333333 566 56678999985432 12222222111 1467777777543
No 375
>PRK12289 GTPase RsgA; Reviewed
Probab=98.29 E-value=1.4e-06 Score=70.35 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=35.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCee-------eEEEEEEEEECCEEEEEEEEeCCCcc
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG-------VEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (211)
.++|+|++|||||||+|+|++.........+ + +|.....+.+++.. .|+||||..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs-~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~ 235 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVS-GKLGRGRHTTRHVELFELPNGG---LLADTPGFN 235 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCcccccccccc-CCCCCCCCcCceeEEEECCCCc---EEEeCCCcc
Confidence 3799999999999999999976433221111 1 22233334454322 589999974
No 376
>PRK01889 GTPase RsgA; Reviewed
Probab=98.27 E-value=3.8e-06 Score=68.17 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=57.5
Q ss_pred HhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEeCCCC
Q 028294 75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTA 153 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~ 153 (211)
+..++|.+++|+++..+.....+..++...... +.|.+||+||+||.+... +....+.. ..+++++.+|++++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g 182 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDG 182 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCC
Confidence 367899999999996444444455554444443 678899999999965311 11222222 35678999999999
Q ss_pred CCHHHHHHHHH
Q 028294 154 QNVEEAFIKTA 164 (211)
Q Consensus 154 ~~i~~~~~~i~ 164 (211)
.|++++...|.
T Consensus 183 ~gl~~L~~~L~ 193 (356)
T PRK01889 183 EGLDVLAAWLS 193 (356)
T ss_pred ccHHHHHHHhh
Confidence 99999877763
No 377
>PRK13796 GTPase YqeH; Provisional
Probab=98.27 E-value=8e-06 Score=66.52 Aligned_cols=92 Identities=27% Similarity=0.335 Sum_probs=61.1
Q ss_pred chhhchHHHhcccc-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHH----HHHHHc
Q 028294 67 SFRSITRSYYRGAA-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE----QFAKEN 141 (211)
Q Consensus 67 ~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~~~ 141 (211)
.+..... .+...| .+++|+|+.|.. ..|...+.+... +.|+++|+||+|+... ....+... .+++..
T Consensus 58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 58 DFLKLLN-GIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-NNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKEL 129 (365)
T ss_pred HHHHHHH-hhcccCcEEEEEEECccCC-----CchhHHHHHHhC-CCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhc
Confidence 3444333 334455 899999998743 234445544433 6799999999999642 22233333 334455
Q ss_pred CC---cEEEEeCCCCCCHHHHHHHHHHH
Q 028294 142 GL---LFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 142 ~~---~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
++ .++.+||+++.|++++++.|.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 65 58999999999999999988654
No 378
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.26 E-value=0.00021 Score=50.68 Aligned_cols=147 Identities=20% Similarity=0.232 Sum_probs=76.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCC-Ccc----------------
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTA-GQE---------------- 66 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~-G~~---------------- 66 (211)
...++|.|.|+||+||||++.++.+.-....+.-. | +....+.-++...-+.+.|.. |..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg-G--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG-G--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceee-e--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 35689999999999999999988743222211111 1 112223345555666666665 311
Q ss_pred ---------chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH
Q 028294 67 ---------SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF 137 (211)
Q Consensus 67 ---------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~ 137 (211)
........++..+|++| +|=--+-.+ ....+...+........|++.++++.+- + ...+ ++
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMEl-ks~~f~~~ve~vl~~~kpliatlHrrsr-~---P~v~---~i 149 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVII--IDEIGPMEL-KSKKFREAVEEVLKSGKPLIATLHRRSR-H---PLVQ---RI 149 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhh-ccHHHHHHHHHHhcCCCcEEEEEecccC-C---hHHH---Hh
Confidence 11112344455667554 453333211 1234555555555568898888887653 1 1112 22
Q ss_pred HHHcCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 138 AKENGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 138 ~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
...+..++++ +..|=+.+++.|+..+
T Consensus 150 -k~~~~v~v~l---t~~NR~~i~~~Il~~L 175 (179)
T COG1618 150 -KKLGGVYVFL---TPENRNRILNEILSVL 175 (179)
T ss_pred -hhcCCEEEEE---ccchhhHHHHHHHHHh
Confidence 2223333333 4444447777766654
No 379
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=4.6e-06 Score=75.87 Aligned_cols=156 Identities=24% Similarity=0.305 Sum_probs=84.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCC------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCc--------cchhhchHH
Q 028294 9 YIIIGDTGVGKSCLLLQFTDKRFQPV------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ--------ESFRSITRS 74 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~--------~~~~~~~~~ 74 (211)
-+|+|++|+||||++..- +..|.-. .....+ +.... ..+.+ .-.++||+|. +.....|..
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~g-T~~cd-wwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPG-TRNCD-WWFTD---EAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCC-CcccC-ccccc---ceEEEcCCcceecccCcchhhHHHHHH
Confidence 478999999999987532 2222111 001111 11111 22222 2358899992 123334554
Q ss_pred H---------hccccEEEEEEECCCH-----H-H---HHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC-----CCCH
Q 028294 75 Y---------YRGAAGALLVYDITRR-----E-T---FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR-----AVSK 131 (211)
Q Consensus 75 ~---------~~~~d~~i~v~d~~~~-----~-~---~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~-----~~~~ 131 (211)
+ .+..|++|+.+|+.+- . . ...++.-++++........|++|++||.|+...- ..+.
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~GF~efF~~l~~ 281 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPGFEEFFGSLNK 281 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccccHHHHHhccCH
Confidence 4 3678999999998652 1 1 2234455666666666899999999999985421 1111
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhc
Q 028294 132 EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEG 174 (211)
Q Consensus 132 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~ 174 (211)
++.++. .|+ -+..++....+....+++-.+.+.++.+..
T Consensus 282 ~~r~qv---wG~-tf~~~~~~~~~~~~~~~~e~~~L~~rl~~~ 320 (1188)
T COG3523 282 EEREQV---WGV-TFPLDARRNANLAAELEQEFRLLLDRLNAQ 320 (1188)
T ss_pred HHHhhh---cee-ccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 211111 222 345566665455555555555555544443
No 380
>PRK14974 cell division protein FtsY; Provisional
Probab=98.22 E-value=1.2e-05 Score=64.42 Aligned_cols=96 Identities=14% Similarity=0.041 Sum_probs=55.4
Q ss_pred EEEEEEeCCCccchhhc----hHHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028294 55 IKLQIWDTAGQESFRSI----TRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 128 (211)
..+.|+||+|....... ...+ ....|.+++|+|+..... .+.. ...+... -..--+++||.|.....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d--~~~~-a~~f~~~---~~~~giIlTKlD~~~~~- 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND--AVEQ-AREFNEA---VGIDGVILTKVDADAKG- 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh--HHHH-HHHHHhc---CCCCEEEEeeecCCCCc-
Confidence 45889999996542221 1111 125688899999866432 1111 1222221 22357889999974322
Q ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 129 VSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
--+-..+...+.|+..++ +|.+++++...
T Consensus 296 ---G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 296 ---GAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred ---cHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 223334445688888876 78888776543
No 381
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=4e-06 Score=70.40 Aligned_cols=117 Identities=19% Similarity=0.166 Sum_probs=82.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCC----------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV----------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~ 69 (211)
.-+|.+.-+-.+||||+-.+.+.-..-.. .....|++.+..-..+...+.+++++||||+-.|.
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 44678888889999999998763211000 01122555555545555567889999999999999
Q ss_pred hchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028294 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 126 (211)
-.....++-.|+.|+|++....-.-+...-|++ +.++ ++|.+.++||+|....
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ-~~ry---~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGVESQTETVWRQ-MKRY---NVPRICFINKMDRMGA 171 (721)
T ss_pred EEehhhhhhccCeEEEEEcccceehhhHHHHHH-HHhc---CCCeEEEEehhhhcCC
Confidence 888999999999999999887644344444533 3333 8999999999997543
No 382
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.19 E-value=3.1e-06 Score=65.15 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=34.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCC------CeeeEEEEEEEEECCEEEEEEEEeCCCccc
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRPIKLQIWDTAGQES 67 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 67 (211)
.++++|++|+|||||+|+|.+......... ..-+|.....+.+.+. .++||||...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~ 183 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNE 183 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccc
Confidence 678999999999999999997643221110 0012222233444332 5899999643
No 383
>PRK13796 GTPase YqeH; Provisional
Probab=98.17 E-value=3.2e-06 Score=68.87 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=38.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCC----CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (211)
.++.++|.+|||||||+|+|+...... ......|+|.....+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 478999999999999999998643111 11222355566665666543 3599999964
No 384
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.17 E-value=3.9e-05 Score=59.97 Aligned_cols=96 Identities=18% Similarity=0.071 Sum_probs=56.2
Q ss_pred EEEEEEEeCCCccchhhchH-------HHh-----ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecC
Q 028294 54 PIKLQIWDTAGQESFRSITR-------SYY-----RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC 121 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~ 121 (211)
.+.+.|+||||......... ... ...|.+++|+|+.... ..+.. ...+.+.. .+.-+++||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~-~~~f~~~~---~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQ-AKVFNEAV---GLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHH-HHHHHhhC---CCCEEEEEcc
Confidence 35788999999764333211 111 2378999999997532 22222 22222221 2468889999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 122 DLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 122 Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
|..... -.+.......+.|+.+++ +|.+++++-.
T Consensus 228 De~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 228 DGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred CCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 974321 233344445688888887 6777766543
No 385
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.17 E-value=5.1e-06 Score=67.54 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=39.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCC----CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ----PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF 68 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~ 68 (211)
.+++++|.+|+|||||+|+|+..... .......+.+.....+.+++. +.++||||....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCCh
Confidence 47999999999999999999975321 112222355555555555332 469999996543
No 386
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.09 E-value=6.3e-06 Score=64.31 Aligned_cols=58 Identities=22% Similarity=0.262 Sum_probs=35.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCC------CCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRF------QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF 68 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~ 68 (211)
..+++|++|+|||||+|+|....- ......-.=++.....+.+++.. .+.||||...+
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 578999999999999999986322 11111111122333345665333 37899997543
No 387
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.09 E-value=6.1e-05 Score=62.18 Aligned_cols=86 Identities=9% Similarity=-0.028 Sum_probs=46.2
Q ss_pred EEEEEEEeCCCccchhhc----hHHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028294 54 PIKLQIWDTAGQESFRSI----TRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 127 (211)
.+.+.|+||||....... ...+ ....|-+++|+|+.-..... .....+... -.+--+++||.|.....
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~~---~~~~g~IlTKlD~~arg 255 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKDS---VDVGSVIITKLDGHAKG 255 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHhc---cCCcEEEEECccCCCCc
Confidence 467899999996533321 1111 23467899999986542221 111222221 24668889999974321
Q ss_pred CCCHHHHHHHHHHcCCcEEEEe
Q 028294 128 AVSKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~s 149 (211)
-.+-......+.|+.+++
T Consensus 256 ----G~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 256 ----GGALSAVAATKSPIIFIG 273 (429)
T ss_pred ----cHHhhhHHHHCCCeEEEc
Confidence 112233334566655543
No 388
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=1.7e-05 Score=63.31 Aligned_cols=151 Identities=20% Similarity=0.240 Sum_probs=88.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC-----------------------CeeeEEEEEEEEECC---------
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-----------------------TIGVEFGARMVTIDG--------- 52 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~--------- 52 (211)
..++++++|...+|||||+--|..+..+...-. ..|.+.....+++..
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 457999999999999999887765443221100 111111111122111
Q ss_pred -EEEEEEEEeCCCccchhhchHHHhc--cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC-
Q 028294 53 -RPIKLQIWDTAGQESFRSITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA- 128 (211)
Q Consensus 53 -~~~~l~l~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~- 128 (211)
..--+.++|.+|+..|......-+. ..|...+|++++....+.. +.-+-.+... +.|++|+++|+|+.+..-
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL---~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL---NIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh---CCCeEEEEEeeccccchhH
Confidence 1123789999999988875443332 3567888998877544322 1222222222 899999999999965411
Q ss_pred -----------------------CCHHHHHHHHHH----cCCcEEEEeCCCCCCHHHH
Q 028294 129 -----------------------VSKEEGEQFAKE----NGLLFLEASARTAQNVEEA 159 (211)
Q Consensus 129 -----------------------~~~~~~~~~~~~----~~~~~~~~s~~~~~~i~~~ 159 (211)
-+..++..-+.+ +=.|++.+|+..|+|++-+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 011122222222 2346899999999987644
No 389
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.06 E-value=0.00014 Score=58.08 Aligned_cols=89 Identities=16% Similarity=0.092 Sum_probs=52.1
Q ss_pred EEEEEEeCCCccchhhchHHHhc--------cccEEEEEEECCCHHHHHH-HHH-HHHHHHHhcCCCCeEEEEEecCCCC
Q 028294 55 IKLQIWDTAGQESFRSITRSYYR--------GAAGALLVYDITRRETFNH-LSS-WLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~~~-~~~-~~~~~~~~~~~~~p~ivv~nK~Dl~ 124 (211)
....++++.|..........+.. ..|++|-|+|+.+-..... +.. ....+.. -=+|++||.|+.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv 158 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLV 158 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCC
Confidence 44567888886655444444432 3567999999876432221 222 2222222 238999999997
Q ss_pred CCCCCCHHHHHHHHHHc--CCcEEEEeCC
Q 028294 125 HRRAVSKEEGEQFAKEN--GLLFLEASAR 151 (211)
Q Consensus 125 ~~~~~~~~~~~~~~~~~--~~~~~~~s~~ 151 (211)
+... .+..+...+.. .++++.++..
T Consensus 159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~~ 185 (323)
T COG0523 159 DAEE--LEALEARLRKLNPRARIIETSYG 185 (323)
T ss_pred CHHH--HHHHHHHHHHhCCCCeEEEcccc
Confidence 7553 44455555554 4568877763
No 390
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.06 E-value=9.3e-06 Score=64.03 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=37.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC------CeeeEEEEEEEEECCEEEEEEEEeCCCccchh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL------TIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~ 69 (211)
-.++++|++|+|||||+|.|++......... ...++.....+.+.... .++||||...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence 4689999999999999999997654322111 11123333344444222 489999986543
No 391
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.99 E-value=8.5e-06 Score=67.27 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=44.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (211)
.+.|.+||.|+|||||+||.|.+.+.... ..|.|.|....++.+.. .+.|.|+||.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsV-S~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSV-SSTPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeee-ecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 68999999999999999999999886433 34446666666666654 35689999943
No 392
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.98 E-value=0.00025 Score=56.71 Aligned_cols=85 Identities=11% Similarity=0.093 Sum_probs=47.7
Q ss_pred EEEEEEeCCCccchhhchHHHhc--------cccEEEEEEECCCHHHH-HHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 55 IKLQIWDTAGQESFRSITRSYYR--------GAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
....++++.|......+...++. ..+++|.|+|+.+-... .........+.. -=+|++||+|+..
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY------ADRILLTKTDVAG 164 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh------CCEEEEeccccCC
Confidence 45578889997766665554432 24789999998653221 111111222222 2388999999865
Q ss_pred CCCCCHHHHHHHHHHc--CCcEEEEe
Q 028294 126 RRAVSKEEGEQFAKEN--GLLFLEAS 149 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~--~~~~~~~s 149 (211)
.. +...+..+.. .++++.++
T Consensus 165 ~~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 165 EA----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred HH----HHHHHHHHHhCCCCEEEEec
Confidence 32 3444444443 34566554
No 393
>PRK00098 GTPase RsgA; Reviewed
Probab=97.98 E-value=1.8e-05 Score=62.81 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=34.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC----ee--eEEEEEEEEECCEEEEEEEEeCCCcc
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IG--VEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (211)
.++++|++|+|||||+|.|++.......... .| ++.....+.+++. ..++||||..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~ 227 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFS 227 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcC
Confidence 5889999999999999999976433221111 00 2222233344432 2589999965
No 394
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=0.00032 Score=59.27 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=72.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCC---------CCCC--------------CeeeEEEEEEEE------E-CCEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP---------VHDL--------------TIGVEFGARMVT------I-DGRPIK 56 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~---------~~~~--------------~~~~~~~~~~~~------~-~~~~~~ 56 (211)
-.|+|+|+.|+||||++..|...-... ..+. ..+..+....-. + .....+
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~D 430 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYK 430 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCC
Confidence 478899999999999998886421000 0000 001111100000 0 012467
Q ss_pred EEEEeCCCccchhhchHH---Hh--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCH
Q 028294 57 LQIWDTAGQESFRSITRS---YY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK 131 (211)
Q Consensus 57 l~l~D~~G~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~ 131 (211)
+.|+||+|.......... .+ ......++|++.... ...+...+..+.. ..+.-+|+||.|... ..
T Consensus 431 LVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~eii~~f~~----~~~~gvILTKlDEt~----~l 500 (559)
T PRK12727 431 LVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDEVVRRFAH----AKPQGVVLTKLDETG----RF 500 (559)
T ss_pred EEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHHHHHHHHh----hCCeEEEEecCcCcc----ch
Confidence 889999996433221110 01 012346677777642 2333333333322 246789999999732 23
Q ss_pred HHHHHHHHHcCCcEEEEeCCCCCCH
Q 028294 132 EEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 132 ~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
-.+.......+.++..++ +|..+
T Consensus 501 G~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 501 GSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred hHHHHHHHHhCCCEEEEe--CCCCc
Confidence 445566667788877775 44555
No 395
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.95 E-value=0.00014 Score=59.08 Aligned_cols=137 Identities=19% Similarity=0.138 Sum_probs=70.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCCe--------------------eeEEEEEEE--E-----ECCEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTI--------------------GVEFGARMV--T-----IDGRPI 55 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~---~~~~~~--------------------~~~~~~~~~--~-----~~~~~~ 55 (211)
.-.++++|++|+||||++..|...-... .....+ +.......- . ......
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 3468899999999999999987432110 000000 111100000 0 001234
Q ss_pred EEEEEeCCCccchhhch---HHHhc---cccEEEEEEECCCH-HHHHHHHHHHHHHHHhcC-C----CCeEEEEEecCCC
Q 028294 56 KLQIWDTAGQESFRSIT---RSYYR---GAAGALLVYDITRR-ETFNHLSSWLEDARQHAN-P----NMSIMLVGNKCDL 123 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~~~---~~~~~---~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~-~----~~p~ivv~nK~Dl 123 (211)
.+.++||+|........ ...+. ...-.++|++++.. .....+ +..+..... + ..+--++++|.|-
T Consensus 217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~ev---i~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEV---VQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHH---HHHHHHhhcccccccCCCCEEEEecccc
Confidence 68899999965433221 11122 23345888888764 332322 222222210 0 0134677899996
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEe
Q 028294 124 AHRRAVSKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (211)
.. ..-.+..+....+.|+..++
T Consensus 294 t~----~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 294 AS----NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred CC----CccHHHHHHHHHCcCeEEEe
Confidence 43 23345566666788876665
No 396
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.94 E-value=6.5e-05 Score=58.73 Aligned_cols=91 Identities=22% Similarity=0.191 Sum_probs=64.3
Q ss_pred chHHHhccccEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Q 028294 71 ITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (211)
+..-...+.|-.|+|+++.+|+ +...+..++-.... .+...+|++||+|+.+......++........+++++.+|
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s 148 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVS 148 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEec
Confidence 3444445678888899998876 33444444333333 3777888899999976554433456667777999999999
Q ss_pred CCCCCCHHHHHHHHH
Q 028294 150 ARTAQNVEEAFIKTA 164 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~ 164 (211)
++++++++++.+.+.
T Consensus 149 ~~~~~~~~~l~~~l~ 163 (301)
T COG1162 149 AKNGDGLEELAELLA 163 (301)
T ss_pred CcCcccHHHHHHHhc
Confidence 999999998876654
No 397
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=6.6e-05 Score=56.86 Aligned_cols=115 Identities=17% Similarity=0.305 Sum_probs=71.3
Q ss_pred eeeEEEEcCCCC--CHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc-cchhhchHHHhccccEE
Q 028294 6 LFKYIIIGDTGV--GKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ-ESFRSITRSYYRGAAGA 82 (211)
Q Consensus 6 ~~~i~vvG~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~-~~~~~~~~~~~~~~d~~ 82 (211)
+.-++|+|..|+ ||.+|+.+|....+.........+.+...++.-......+.+.-.+-- +.+.. .........++
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lp-n~~~a~pl~a~ 82 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLP-NAEIAEPLQAF 82 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeecccchhccC-CcccccceeeE
Confidence 456789999999 999999999988887766655555555443322222222222222211 11111 12233456689
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCC
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLA 124 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 124 (211)
++|||++...++..+..|+...... ... .+.++||.|..
T Consensus 83 vmvfdlse~s~l~alqdwl~htdin---sfdillcignkvdrv 122 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQDWLPHTDIN---SFDILLCIGNKVDRV 122 (418)
T ss_pred EEEEeccchhhhHHHHhhccccccc---cchhheecccccccc
Confidence 9999999999999999997643222 122 35558999964
No 398
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=4.6e-05 Score=58.56 Aligned_cols=60 Identities=28% Similarity=0.496 Sum_probs=43.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CeeeEEEEEEEEE--CCEEEEEEEEeCCC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMVTI--DGRPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~l~l~D~~G 64 (211)
..++|+-+|..|.||||||+.|.+-.+.....+ ..++.....++.+ .+..+++.++||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 568999999999999999999998887543222 1233333333333 55667889999999
No 399
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.89 E-value=0.00044 Score=57.16 Aligned_cols=138 Identities=18% Similarity=0.120 Sum_probs=72.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe-----------------------eeEEEEEEEE-------ECCEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-----------------------GVEFGARMVT-------IDGRPIK 56 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~-------~~~~~~~ 56 (211)
-.|+++|++|+||||++..|.+........... +.......-. ..-....
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d 271 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH 271 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence 479999999999999999886531100000000 1110000000 0012235
Q ss_pred EEEEeCCCccchhh----chHHHh--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC
Q 028294 57 LQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 130 (211)
Q Consensus 57 l~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 130 (211)
+.++||+|...... ....+. ....-.++|+|++... ..+..+...+.. --+--++++|.|-.. .
T Consensus 272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f~~----~~~~~~I~TKlDEt~----~ 341 (420)
T PRK14721 272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAYQG----HGIHGCIITKVDEAA----S 341 (420)
T ss_pred EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHhcC----CCCCEEEEEeeeCCC----C
Confidence 78999999554222 122221 1234577888987532 223333322221 233467899999643 2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028294 131 KEEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
.-.+..++...+.++..++ +|.+|
T Consensus 342 ~G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 342 LGIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred ccHHHHHHHHhCCCEEEEE--CCCCc
Confidence 2345566667788877775 55565
No 400
>PRK13695 putative NTPase; Provisional
Probab=97.88 E-value=0.00042 Score=50.48 Aligned_cols=22 Identities=41% Similarity=0.688 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
++|+|.|++|+|||||++.+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998754
No 401
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.85 E-value=5.2e-05 Score=55.99 Aligned_cols=111 Identities=16% Similarity=0.181 Sum_probs=59.6
Q ss_pred EEEEEeCCCccchhh---chHHHh---cccc---EEEEEEECCC-HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 56 KLQIWDTAGQESFRS---ITRSYY---RGAA---GALLVYDITR-RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~---~~~~~~---~~~d---~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
.+.++|+||+-+... ..+.+. ..-+ .+++++|..= -++...+...+..+.....-..|.|=+++|.|+..
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk 178 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLK 178 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhh
Confidence 367899999876544 222222 1112 4566666421 12233333333333333334899999999999853
Q ss_pred CCCCCHHHHHH------------------------HHH-------HcC-CcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 126 RRAVSKEEGEQ------------------------FAK-------ENG-LLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 126 ~~~~~~~~~~~------------------------~~~-------~~~-~~~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
. ...++.++ +.+ ..+ +.|.+....+.++++.++..|-..+.
T Consensus 179 ~--~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQ 251 (273)
T KOG1534|consen 179 D--KNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQ 251 (273)
T ss_pred h--hhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHH
Confidence 2 11111111 111 122 24777877777888888777766654
No 402
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.83 E-value=0.00026 Score=51.48 Aligned_cols=84 Identities=15% Similarity=0.046 Sum_probs=45.3
Q ss_pred EEEEEEEeCCCccchhh----chHHHh--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028294 54 PIKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 127 (211)
...+.+.|++|...... ....+. ...+.+++|+|...... ...+...+.... + ...++.||.|.....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~--~-~~~viltk~D~~~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL--G-ITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC--C-CCEEEEECCcCCCCc
Confidence 34577899999743211 111111 24889999999865432 122333332222 2 356778999975422
Q ss_pred CCCHHHHHHHHHHcCCcEEE
Q 028294 128 AVSKEEGEQFAKENGLLFLE 147 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~ 147 (211)
......+...++|+..
T Consensus 156 ----g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 156 ----GAALSIRAVTGKPIKF 171 (173)
T ss_pred ----chhhhhHHHHCcCeEe
Confidence 2222355556666543
No 403
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.82 E-value=4.9e-05 Score=55.66 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=40.8
Q ss_pred EEEEEEeCCCccchhhc-----hHHHhccccEEEEEEECCCHHHHHHHHHH-HHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028294 55 IKLQIWDTAGQESFRSI-----TRSYYRGAAGALLVYDITRRETFNHLSSW-LEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~-----~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 128 (211)
....+.++.|......+ .....-..+.+|.|+|+.+-.....+... ...+. .-=+|++||+|+.+..
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~------~ADvIvlnK~D~~~~~- 157 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIA------FADVIVLNKIDLVSDE- 157 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHC------T-SEEEEE-GGGHHHH-
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcch------hcCEEEEeccccCChh-
Confidence 45667788885544443 01112346789999999764322333332 22332 2238999999986543
Q ss_pred CCHHHHHHHHHH
Q 028294 129 VSKEEGEQFAKE 140 (211)
Q Consensus 129 ~~~~~~~~~~~~ 140 (211)
...+..++..++
T Consensus 158 ~~i~~~~~~ir~ 169 (178)
T PF02492_consen 158 QKIERVREMIRE 169 (178)
T ss_dssp --HHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 122444444444
No 404
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.80 E-value=0.00017 Score=51.13 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=35.8
Q ss_pred EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Q 028294 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (211)
.+.+.|.||+|.. .....++..+|-+|+|....-.+.+.-+ ...+. ..--++++||.|
T Consensus 91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~~D~y~~~---k~~~~-----~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGAGDDIQAI---KAGIM-----EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCchhHHHHh---hhhHh-----hhcCEEEEeCCC
Confidence 4678899998864 2233588889999988887632221111 11222 222488899987
No 405
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.77 E-value=0.00041 Score=50.74 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++++|++|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58899999999999999998654
No 406
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00069 Score=59.73 Aligned_cols=142 Identities=19% Similarity=0.118 Sum_probs=73.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-----------------------eeeEEEEEEEEE--------CCEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-----------------------IGVEFGARMVTI--------DGRPIK 56 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~-----------------------~~~~~~~~~~~~--------~~~~~~ 56 (211)
-|+++|++|+||||++..|...-........ .+..+.... .. ......
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~-~~~~l~~al~~~~~~D 265 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK-DAADLRFALAALGDKH 265 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC-CHHHHHHHHHHhcCCC
Confidence 5799999999999999998743211100000 011110000 00 012346
Q ss_pred EEEEeCCCccchhh----chHHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC
Q 028294 57 LQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS 130 (211)
Q Consensus 57 l~l~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 130 (211)
+.|+||+|...... ....+ ....+-.++|+|++... ..+......+..... --+--+|++|.|-.. .
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~--~~l~~i~~~f~~~~~-~~i~glIlTKLDEt~----~ 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHG--DTLNEVVHAYRHGAG-EDVDGCIITKLDEAT----H 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcH--HHHHHHHHHHhhccc-CCCCEEEEeccCCCC----C
Confidence 88999999443222 11111 12344678899887531 222222233322110 124467899999643 2
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCCCH-HHH
Q 028294 131 KEEGEQFAKENGLLFLEASARTAQNV-EEA 159 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~s~~~~~~i-~~~ 159 (211)
.-.+-.+....++|+..++ +|.+| +++
T Consensus 339 ~G~iL~i~~~~~lPI~yit--~GQ~VPdDL 366 (767)
T PRK14723 339 LGPALDTVIRHRLPVHYVS--TGQKVPEHL 366 (767)
T ss_pred ccHHHHHHHHHCCCeEEEe--cCCCChhhc
Confidence 2334556666788877775 55666 444
No 407
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.69 E-value=0.00024 Score=41.20 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=29.1
Q ss_pred HhccccEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Q 028294 75 YYRGAAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (211)
.-+-.++++|++|++... +.+.-..++..++.... ++|+++|.||+|
T Consensus 10 L~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-~~P~i~V~nK~D 58 (58)
T PF06858_consen 10 LAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-NKPVIVVLNKID 58 (58)
T ss_dssp GGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-TS-EEEEE--TT
T ss_pred HHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-CCCEEEEEeccC
Confidence 334567999999998843 44444456677766654 899999999998
No 408
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.00057 Score=55.83 Aligned_cols=143 Identities=17% Similarity=0.112 Sum_probs=74.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCC---------C-CCC-C----------CeeeEEEEEEE--E----E---C-CEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ---------P-VHD-L----------TIGVEFGARMV--T----I---D-GRP 54 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~---------~-~~~-~----------~~~~~~~~~~~--~----~---~-~~~ 54 (211)
.-.|+++|++|+||||++..|...-.. . .+. . ..+..+....- . + . ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 357899999999999999998532110 0 000 0 00111110000 0 0 0 013
Q ss_pred EEEEEEeCCCccchhh----chHHHh--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028294 55 IKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 128 (211)
..+.|+||+|...... ....++ ...+.+++|+|++-.. ..+......+.. -..--++++|.|-...
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~----~~idglI~TKLDET~k-- 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETAS-- 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC----CCCCEEEEEcccCCCC--
Confidence 5788999999654222 122222 2356788899875432 222233333322 2234778999996442
Q ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028294 129 VSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
.-.+-..+...+.|+..++ +|.++.+-+
T Consensus 393 --~G~iLni~~~~~lPIsyit--~GQ~VPeDI 420 (436)
T PRK11889 393 --SGELLKIPAVSSAPIVLMT--DGQDVKKNI 420 (436)
T ss_pred --ccHHHHHHHHHCcCEEEEe--CCCCCCcch
Confidence 2334556666788876664 444444433
No 409
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.68 E-value=0.00024 Score=51.45 Aligned_cols=135 Identities=22% Similarity=0.257 Sum_probs=63.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeC-CCc---------------------
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDT-AGQ--------------------- 65 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~-~G~--------------------- 65 (211)
+|.+.|++|+|||||+++++..-.... .+..|.-. ..+.-++...-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~-~~v~Gf~t--~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~ 77 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG-LPVGGFYT--EEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD 77 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC-GGEEEEEE--EEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC-CccceEEe--ecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence 689999999999999999874421111 11112111 11122333334444444 220
Q ss_pred -cchhh----chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecC-CCCCCCCCCHHHHHHHHH
Q 028294 66 -ESFRS----ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKC-DLAHRRAVSKEEGEQFAK 139 (211)
Q Consensus 66 -~~~~~----~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~~~~ 139 (211)
+.+.. .....+..+| ++|+|=--+-. .....|.+.+......++|++.++.+. +. ...+.+..
T Consensus 78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~mE-l~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~~ 146 (168)
T PF03266_consen 78 LESFEEIGLPALRNALSSSD--LIVIDEIGKME-LKSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIKR 146 (168)
T ss_dssp HHHHHCCCCCCCHHHHHCCH--EEEE---STTC-CC-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCC--EEEEeccchhh-hcCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHHh
Confidence 11111 2222234555 66777222100 001234455555454578988888776 32 12344555
Q ss_pred HcCCcEEEEeCCCCCCH
Q 028294 140 ENGLLFLEASARTAQNV 156 (211)
Q Consensus 140 ~~~~~~~~~s~~~~~~i 156 (211)
..++.++.++..+.+.+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 56788888876665544
No 410
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.67 E-value=0.00012 Score=60.91 Aligned_cols=84 Identities=17% Similarity=0.035 Sum_probs=46.3
Q ss_pred EEEEEeCCCccchhhch----H--HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028294 56 KLQIWDTAGQESFRSIT----R--SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~~~----~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 129 (211)
.+.|+||||........ . .....+|.+++|+|+.... ..+ .....+... -...-+++||.|....
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~av-~~a~~F~~~---l~i~gvIlTKlD~~a~--- 247 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--QAK-NQAKAFHEA---VGIGGIIITKLDGTAK--- 247 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--HHH-HHHHHHHhc---CCCCEEEEecccCCCc---
Confidence 68899999965433211 1 1233678899999987642 111 222222221 1134678899996432
Q ss_pred CHHHHHHHHHHcCCcEEEEe
Q 028294 130 SKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~s 149 (211)
.-.+-......+.|+.+++
T Consensus 248 -~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 248 -GGGALSAVAETGAPIKFIG 266 (437)
T ss_pred -ccHHHHHHHHHCcCEEEEe
Confidence 1223444555677766554
No 411
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00028 Score=58.55 Aligned_cols=128 Identities=23% Similarity=0.246 Sum_probs=81.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC------------C--CCCCeeeEEEEEEEEE----------------CCEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP------------V--HDLTIGVEFGARMVTI----------------DGRP 54 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~------------~--~~~~~~~~~~~~~~~~----------------~~~~ 54 (211)
+.-++-|+.+..-|||||...|....... . .....++++...-+.+ ++..
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 34467788899999999999986432111 1 0111233443333332 3456
Q ss_pred EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC-CCCCCCHHH
Q 028294 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA-HRRAVSKEE 133 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~ 133 (211)
+.++++|.||+-.|.+...+.++-.|+.++|+|..+..-.+...-+.+.+.+ ++.-+++.||.|.. -+-+++.++
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~Ee 173 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQEE 173 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHHH
Confidence 7789999999999999999999999999999999875332222233333333 34457789999952 123455555
Q ss_pred HHH
Q 028294 134 GEQ 136 (211)
Q Consensus 134 ~~~ 136 (211)
.-+
T Consensus 174 Lyq 176 (842)
T KOG0469|consen 174 LYQ 176 (842)
T ss_pred HHH
Confidence 443
No 412
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.63 E-value=0.00032 Score=49.15 Aligned_cols=107 Identities=11% Similarity=0.139 Sum_probs=61.1
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECC
Q 028294 10 IIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT 89 (211)
Q Consensus 10 ~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 89 (211)
..-|..|+|||++.-.+...-. .......-.+... ......+.+.++|+|+.. .......+..+|.++++.+.+
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~-~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALA-KLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC
Confidence 3457889999998666542211 0111110001000 000111568899999753 333456788999999999986
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028294 90 RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 124 (211)
. .++..+...++.+.... ...++.+++|+.+..
T Consensus 78 ~-~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~ 110 (139)
T cd02038 78 P-TSITDAYALIKKLAKQL-RVLNFRVVVNRAESP 110 (139)
T ss_pred h-hHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence 4 34444444455554332 356788999999753
No 413
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.62 E-value=0.00056 Score=50.87 Aligned_cols=92 Identities=21% Similarity=0.105 Sum_probs=51.0
Q ss_pred EEEEEEeCCCccchhh----chHHHh--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028294 55 IKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 128 (211)
..+.|+||+|...... ....++ ...+-+++|++++.... .+... ..+.... + +--++++|.|-..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~~~-~~~~~~~--~-~~~lIlTKlDet~--- 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLEQA-LAFYEAF--G-IDGLILTKLDETA--- 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHHHH-HHHHHHS--S-TCEEEEESTTSSS---
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHHHH-HHHhhcc--c-CceEEEEeecCCC---
Confidence 4578999999654332 111111 24667889999876532 22222 2222221 1 2356799999643
Q ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028294 129 VSKEEGEQFAKENGLLFLEASARTAQNVEE 158 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 158 (211)
..-..-..+...+.|+-.++ +|.++++
T Consensus 155 -~~G~~l~~~~~~~~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 155 -RLGALLSLAYESGLPISYIT--TGQRVDD 181 (196)
T ss_dssp -TTHHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred -CcccceeHHHHhCCCeEEEE--CCCChhc
Confidence 22445566667888877775 4445533
No 414
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.61 E-value=0.0047 Score=44.44 Aligned_cols=142 Identities=8% Similarity=0.019 Sum_probs=89.8
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|+......|++||..+.++..|..++...... .... ++... .+-+ | .+...+ -...|
T Consensus 10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~--------~~l~---Vh~a~-----sLPL-p--~e~~~l----RprID 66 (176)
T PF11111_consen 10 LPELNTATILLVGTEEALLQQLAEAMLEEDKE--------FKLK---VHLAK-----SLPL-P--SENNNL----RPRID 66 (176)
T ss_pred CCCcceeEEEEecccHHHHHHHHHHHHhhccc--------eeEE---EEEec-----cCCC-c--ccccCC----CceeE
Confidence 45667899999999999999999999853210 1111 11100 0111 1 111111 23579
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
.++|++|.....++..+..-+..+....-.++-++++.| ....+.-.+...+..+++..++.+++.+.-...++...+=
T Consensus 67 lIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~-a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lA 145 (176)
T PF11111_consen 67 LIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATN-AGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLA 145 (176)
T ss_pred EEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcC-CCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHH
Confidence 999999999999988887766655332222455555544 3334445577899999999999999998877765544443
Q ss_pred HHHHHH
Q 028294 161 IKTAAK 166 (211)
Q Consensus 161 ~~i~~~ 166 (211)
+.|.+.
T Consensus 146 qRLL~~ 151 (176)
T PF11111_consen 146 QRLLRM 151 (176)
T ss_pred HHHHHH
Confidence 344433
No 415
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.60 E-value=0.0054 Score=50.08 Aligned_cols=134 Identities=16% Similarity=0.097 Sum_probs=70.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe---eeEEEEEE---------------EE--E----------CCEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI---GVEFGARM---------------VT--I----------DGRPI 55 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~---------------~~--~----------~~~~~ 55 (211)
.=.|++|||.||||||-+-.|...-........+ +.+.+... +. . .-...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 3468999999999999988876443311111111 11111000 00 0 11345
Q ss_pred EEEEEeCCCccchhh----chHHHhccc--cEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028294 56 KLQIWDTAGQESFRS----ITRSYYRGA--AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~----~~~~~~~~~--d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 129 (211)
++.|+||.|...+.. ....++..+ .-+-+|++++... ..+...+..+... ..--++++|.|-. -
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f~~~----~i~~~I~TKlDET----~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQFSLF----PIDGLIFTKLDET----T 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHhccC----CcceeEEEccccc----C
Confidence 688999999665444 233333333 2355577776542 3333443333322 1225678999953 2
Q ss_pred CHHHHHHHHHHcCCcEEEEe
Q 028294 130 SKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~s 149 (211)
..-.......+.+.|+-.++
T Consensus 353 s~G~~~s~~~e~~~PV~YvT 372 (407)
T COG1419 353 SLGNLFSLMYETRLPVSYVT 372 (407)
T ss_pred chhHHHHHHHHhCCCeEEEe
Confidence 33445566666777765554
No 416
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.59 E-value=6.2e-05 Score=60.49 Aligned_cols=57 Identities=26% Similarity=0.342 Sum_probs=45.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ 65 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~ 65 (211)
..+++.|+|-|++||||+||+|......... ...|.+.....+.++. .+.|.|.||.
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~vg-~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACNVG-NVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhccccCC-CCccchhhhhheeccC---CceeccCCce
Confidence 4689999999999999999999988764433 3347777777777665 3568999994
No 417
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.58 E-value=0.0012 Score=55.43 Aligned_cols=92 Identities=18% Similarity=0.114 Sum_probs=49.2
Q ss_pred EEEEEeCCCccchhh---chHHHhcc---ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028294 56 KLQIWDTAGQESFRS---ITRSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~---~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 129 (211)
.+.++||+|...... .....+.. ..-.++|+|..... ..+.... ..+.. ....-+++||.|-..
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~---~~f~~-~~~~g~IlTKlDet~---- 405 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVV---QAYRG-PGLAGCILTKLDEAA---- 405 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHH---HHhcc-CCCCEEEEeCCCCcc----
Confidence 567999999443221 11112211 12367888886532 2222222 22221 234467789999633
Q ss_pred CHHHHHHHHHHcCCcEEEEeCCCCCCH-HHH
Q 028294 130 SKEEGEQFAKENGLLFLEASARTAQNV-EEA 159 (211)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~s~~~~~~i-~~~ 159 (211)
..-.+..+....++++..++ +|.+| +++
T Consensus 406 ~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL 434 (484)
T PRK06995 406 SLGGALDVVIRYKLPLHYVS--NGQRVPEDL 434 (484)
T ss_pred cchHHHHHHHHHCCCeEEEe--cCCCChhhh
Confidence 23445566777788877774 56666 443
No 418
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.58 E-value=0.00089 Score=44.25 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=49.3
Q ss_pred EEEEc-CCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028294 9 YIIIG-DTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 9 i~vvG-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
|.+.| ..|+||||+...+...-.. ...+. ..+..+.. +.+.++|+|+..... ....+..+|.+|++++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~v-------l~~d~d~~-~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRV-------LLIDLDPQ-YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcE-------EEEeCCCC-CCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56666 5689999987766522211 11111 11222222 668899999865333 3367788999999998
Q ss_pred CCCHHHHHHHHHHHH
Q 028294 88 ITRRETFNHLSSWLE 102 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~ 102 (211)
.+ ..++..+..+++
T Consensus 71 ~~-~~s~~~~~~~~~ 84 (104)
T cd02042 71 PS-PLDLDGLEKLLE 84 (104)
T ss_pred CC-HHHHHHHHHHHH
Confidence 75 445555555544
No 419
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.56 E-value=0.0037 Score=52.10 Aligned_cols=91 Identities=19% Similarity=0.108 Sum_probs=51.5
Q ss_pred EEEEEEEeCCCccchh----hchHHHhc---cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028294 54 PIKLQIWDTAGQESFR----SITRSYYR---GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 126 (211)
...+.|+||+|..... .....++. ...-+++|++++-.. ..+...+..+... + +.-++++|.|-..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f~~~---~-~~~vI~TKlDet~- 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHFSRL---P-LDGLIFTKLDETS- 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHhCCC---C-CCEEEEecccccc-
Confidence 3578899999965433 12333333 223567788875432 2233333333211 2 2368899999633
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028294 127 RAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
..-.+.......+.++..++ +|.+|
T Consensus 372 ---~~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 372 ---SLGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred ---cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 22346677777888877775 44554
No 420
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.55 E-value=0.001 Score=42.90 Aligned_cols=69 Identities=19% Similarity=0.209 Sum_probs=44.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc-hHHHhccccEEEEEEE
Q 028294 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYD 87 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-~~~~~~~~d~~i~v~d 87 (211)
+++.|..|+||||+...+...-... +.. ...++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~------g~~----v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR------GKR----VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC------CCe----EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 6788999999999988876432111 111 12222 6779999986533321 2455667899999998
Q ss_pred CCCH
Q 028294 88 ITRR 91 (211)
Q Consensus 88 ~~~~ 91 (211)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 7654
No 421
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.0014 Score=53.99 Aligned_cols=134 Identities=22% Similarity=0.185 Sum_probs=69.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC-CCCC-------CCC--------------CeeeEEEEEE-E-----EECCEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKR-FQPV-------HDL--------------TIGVEFGARM-V-----TIDGRPIKLQ 58 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~-~~~~-------~~~--------------~~~~~~~~~~-~-----~~~~~~~~l~ 58 (211)
.-++++|++|+||||++..|.... .... .+. ..+....... . .+.....++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999986421 0000 000 0011111000 0 0011245678
Q ss_pred EEeCCCccchhh----chHHHhc-----cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028294 59 IWDTAGQESFRS----ITRSYYR-----GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 59 l~D~~G~~~~~~----~~~~~~~-----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 129 (211)
++||||...... .+..++. ...-.++|+|++... ..+......+.. --+--++++|.|-...
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~----~~~~glIlTKLDEt~~--- 374 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES----LNYRRILLTKLDEADF--- 374 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC----CCCCEEEEEcccCCCC---
Confidence 999999653221 1222222 233578899987653 222232222211 2234778999996431
Q ss_pred CHHHHHHHHHHcCCcEEEEeC
Q 028294 130 SKEEGEQFAKENGLLFLEASA 150 (211)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~s~ 150 (211)
.-.+-......+.|+..++.
T Consensus 375 -~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 375 -LGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred -ccHHHHHHHHHCCCEEEEec
Confidence 23345556667888766653
No 422
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.47 E-value=0.0022 Score=45.23 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999998664
No 423
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.46 E-value=0.00068 Score=51.07 Aligned_cols=61 Identities=28% Similarity=0.284 Sum_probs=37.3
Q ss_pred EEEEeC-CCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC-CeEEEEEecCCCC
Q 028294 57 LQIWDT-AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPN-MSIMLVGNKCDLA 124 (211)
Q Consensus 57 l~l~D~-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~ 124 (211)
+.+.|| +|.+.+.+ .....+|.+|+|+|.+-. ++............. + .++.+|+||.|-.
T Consensus 136 ~VivDtEAGiEHfgR---g~~~~vD~vivVvDpS~~-sl~taeri~~L~~el---g~k~i~~V~NKv~e~ 198 (255)
T COG3640 136 VVIVDTEAGIEHFGR---GTIEGVDLVIVVVDPSYK-SLRTAERIKELAEEL---GIKRIFVVLNKVDEE 198 (255)
T ss_pred EEEEecccchhhhcc---ccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHh---CCceEEEEEeeccch
Confidence 455665 34444433 345679999999998654 333333322222222 4 8999999999953
No 424
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.44 E-value=0.0014 Score=45.47 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~ 31 (211)
...+++.|++|+|||+|++.+...-.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34689999999999999999986643
No 425
>PRK10867 signal recognition particle protein; Provisional
Probab=97.43 E-value=0.0016 Score=54.16 Aligned_cols=87 Identities=15% Similarity=0.023 Sum_probs=46.9
Q ss_pred EEEEEEEeCCCccchhh----chHHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028294 54 PIKLQIWDTAGQESFRS----ITRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 127 (211)
.+.+.|+||||...... ....+ .-..+.+++|+|+.... +.......+.... ...-+++||.|.....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~---~i~giIlTKlD~~~rg 256 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL---GLTGVILTKLDGDARG 256 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC---CCCEEEEeCccCcccc
Confidence 35688999999543221 11111 12467789999986532 2222223333211 1246778999963321
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeC
Q 028294 128 AVSKEEGEQFAKENGLLFLEASA 150 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~s~ 150 (211)
-.+.......+.|+.++..
T Consensus 257 ----G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 257 ----GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ----cHHHHHHHHHCcCEEEEeC
Confidence 2244555567788666543
No 426
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.006 Score=50.13 Aligned_cols=139 Identities=15% Similarity=0.087 Sum_probs=73.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCC----CCC-------CC--------------CeeeEEEEEEEE-------ECCE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ----PVH-------DL--------------TIGVEFGARMVT-------IDGR 53 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~----~~~-------~~--------------~~~~~~~~~~~~-------~~~~ 53 (211)
.-.|+++|++|+||||.+..|...-.. ... .. ..+..+...... -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 457899999999999999887532100 000 00 001111111000 0113
Q ss_pred EEEEEEEeCCCccchhh----chHHHhccc--c-EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028294 54 PIKLQIWDTAGQESFRS----ITRSYYRGA--A-GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~----~~~~~~~~~--d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 126 (211)
...+.++||+|...... ....++... + -.++|+|++... ..+...+..+.. -.+--++++|.|-..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~~----~~~~~~I~TKlDet~- 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFSP----FSYKTVIFTKLDETT- 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhcC----CCCCEEEEEeccCCC-
Confidence 45688999999654221 122233222 2 578899987752 223333333221 124578899999643
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028294 127 RAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
..-.+-.++...+.|+..++ +|.++
T Consensus 327 ---~~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 327 ---CVGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred ---cchHHHHHHHHHCCCEEEEe--CCCCC
Confidence 22334556666788876664 55666
No 427
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.39 E-value=0.0043 Score=51.59 Aligned_cols=87 Identities=16% Similarity=0.027 Sum_probs=48.6
Q ss_pred EEEEEEEeCCCccchhhc----hHHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028294 54 PIKLQIWDTAGQESFRSI----TRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 127 (211)
.+.+.|+||||....... ...+ .-..|.+++|+|+.... ........+.... ...-++.||.|.....
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v---~i~giIlTKlD~~~~~ 255 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNERL---GLTGVVLTKLDGDARG 255 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhhC---CCCEEEEeCccCcccc
Confidence 356889999995432221 1111 23467889999987542 2222333333221 2346779999963311
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeC
Q 028294 128 AVSKEEGEQFAKENGLLFLEASA 150 (211)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~s~ 150 (211)
-.+.......+.|+.++..
T Consensus 256 ----G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 256 ----GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ----cHHHHHHHHHCcCEEEEeC
Confidence 2255566667888766553
No 428
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.39 E-value=0.0032 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-.+|.|.-|+|||||+|+++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 4678899999999999999854
No 429
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.00017 Score=58.19 Aligned_cols=155 Identities=21% Similarity=0.124 Sum_probs=93.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCC-------------------CCCCC----------CCeeeEEEEEEEEECCEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-------------------QPVHD----------LTIGVEFGARMVTIDGRPI 55 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~-------------------~~~~~----------~~~~~~~~~~~~~~~~~~~ 55 (211)
..++++++|...+||||+-..++.... ...|. ..-|.+.......++-...
T Consensus 78 ~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~ 157 (501)
T KOG0459|consen 78 EHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENK 157 (501)
T ss_pred CCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecce
Confidence 468999999999999998666532110 00000 0113333333444455556
Q ss_pred EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHH---HHHHHHHHHH--HHHHhcCCCCeEEEEEecCCCCCCCCCC
Q 028294 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLSSWLE--DARQHANPNMSIMLVGNKCDLAHRRAVS 130 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~--~~~~~~~~~~p~ivv~nK~Dl~~~~~~~ 130 (211)
++.+.|+||+..|-.....-..++|..++|+++.-.+ .|+.=.+.+. .+.... .....++++||+|-+.- .++
T Consensus 158 ~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~-gv~~lVv~vNKMddPtv-nWs 235 (501)
T KOG0459|consen 158 RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-GVKHLIVLINKMDDPTV-NWS 235 (501)
T ss_pred eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh-ccceEEEEEEeccCCcc-Ccc
Confidence 7889999999998887777788999999999985422 1221111111 111111 25678999999997531 222
Q ss_pred H---HH----HHHHHHHcC------CcEEEEeCCCCCCHHHHHH
Q 028294 131 K---EE----GEQFAKENG------LLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 131 ~---~~----~~~~~~~~~------~~~~~~s~~~~~~i~~~~~ 161 (211)
. ++ ...+....+ ..++++|..+|.++.+-.+
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 2 22 222333322 3489999999999988664
No 430
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.34 E-value=0.00024 Score=42.20 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
..+|.|+.|+|||||+.++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998864
No 431
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.31 E-value=0.0003 Score=52.75 Aligned_cols=29 Identities=21% Similarity=0.192 Sum_probs=26.2
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
|..+...-|+|+|++|+|||||++.|.+.
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 77788889999999999999999999864
No 432
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.29 E-value=0.00025 Score=48.23 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999854
No 433
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.002 Score=52.50 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=49.3
Q ss_pred EEEEEEeCCCccchhh----chHHHhc--cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028294 55 IKLQIWDTAGQESFRS----ITRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~----~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 128 (211)
..+.|+||||...... ....+.. ..+.+++|.++... ...+......+ . .-.+--++++|.|-..
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f---~-~l~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKL---A-EIPIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhc---C-cCCCCEEEEEcccCCC---
Confidence 5788999999743332 1222222 34566777776332 22222222222 1 1224477799999643
Q ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028294 129 VSKEEGEQFAKENGLLFLEASARTAQNVEE 158 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 158 (211)
..-.+-..+...+.|+..++ +|.++.+
T Consensus 357 -~~G~~Lsv~~~tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMT--DGQNITE 383 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence 22345556667788877765 3444443
No 434
>PRK08118 topology modulation protein; Reviewed
Probab=97.27 E-value=0.00026 Score=51.24 Aligned_cols=23 Identities=48% Similarity=0.626 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.+|+|+|++|||||||.+.|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999854
No 435
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.25 E-value=0.0024 Score=42.54 Aligned_cols=100 Identities=15% Similarity=0.038 Sum_probs=57.2
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCH
Q 028294 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRR 91 (211)
Q Consensus 12 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 91 (211)
=+..|+||||+...|...-........ ........... .+.+.|+|+.... .....+..+|.+|++++.+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~-----~l~d~d~~~~~-D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~- 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRV-----LLVDLDLQFGD-DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL- 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcE-----EEEECCCCCCC-CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-
Confidence 356789999977666422111101111 01101111111 6789999986533 33456788999999988754
Q ss_pred HHHHHHHHHHHHHHHhcCC-CCeEEEEEec
Q 028294 92 ETFNHLSSWLEDARQHANP-NMSIMLVGNK 120 (211)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK 120 (211)
.+...+..+++.+.+.... ...+.+++|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 3556666666666655433 4567777774
No 436
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.00031 Score=51.39 Aligned_cols=23 Identities=35% Similarity=0.665 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.+|+|+|++||||||+.++|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999866
No 437
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.21 E-value=0.0019 Score=44.77 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998653
No 438
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.00029 Score=53.51 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~~~ 31 (211)
|+++|++|||||||+|.+.+-..
T Consensus 32 vsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999986543
No 439
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.19 E-value=0.0045 Score=45.15 Aligned_cols=85 Identities=28% Similarity=0.300 Sum_probs=59.0
Q ss_pred EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028294 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 132 (211)
Q Consensus 53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 132 (211)
..+.+.++|+|+.... .....+..+|.+++++..... +...+..+++.+... +.|+.+++|+.|.... ..+
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~ 161 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE 161 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence 4567899999976432 344567889999999988743 445556666555543 5678999999997432 245
Q ss_pred HHHHHHHHcCCcEE
Q 028294 133 EGEQFAKENGLLFL 146 (211)
Q Consensus 133 ~~~~~~~~~~~~~~ 146 (211)
+..++.+..+++++
T Consensus 162 ~~~~~~~~~~~~vl 175 (179)
T cd03110 162 EIEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHHcCCCeE
Confidence 66777777787765
No 440
>PRK07261 topology modulation protein; Provisional
Probab=97.19 E-value=0.00036 Score=50.76 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.+|+|+|++|+|||||.+.|...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999998743
No 441
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.17 E-value=0.00036 Score=48.87 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~ 29 (211)
|+++|++|||||||++.|...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999844
No 442
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.16 E-value=0.0005 Score=49.91 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=25.3
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
|+.....-+.|+|++|+|||||++++...
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHH
Confidence 66667778999999999999999999855
No 443
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.16 E-value=0.00038 Score=48.40 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58999999999999999988664
No 444
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.14 E-value=0.00057 Score=51.42 Aligned_cols=68 Identities=16% Similarity=0.108 Sum_probs=37.5
Q ss_pred EEEEEEeCCCccchhh------chHHHhccccEEEEEEECC------CHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Q 028294 55 IKLQIWDTAGQESFRS------ITRSYYRGAAGALLVYDIT------RRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~------~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (211)
-...++|+|||-++.. .....+...|.-+.++.+. +|..|.. ..+..+.....-..|-+=|+.|+|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS--~lL~sl~tMl~melphVNvlSK~D 174 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFIS--SLLVSLATMLHMELPHVNVLSKAD 174 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHH--HHHHHHHHHHhhcccchhhhhHhH
Confidence 3467999999754332 1223344566555555443 4544332 222222222223678888899999
Q ss_pred CC
Q 028294 123 LA 124 (211)
Q Consensus 123 l~ 124 (211)
+.
T Consensus 175 l~ 176 (290)
T KOG1533|consen 175 LL 176 (290)
T ss_pred HH
Confidence 73
No 445
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.14 E-value=0.00074 Score=52.86 Aligned_cols=61 Identities=23% Similarity=0.372 Sum_probs=38.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCC----CCCCCCeeeEEEEEE-EEECCEEEEEEEEeCCCc
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ----PVHDLTIGVEFGARM-VTIDGRPIKLQIWDTAGQ 65 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~l~l~D~~G~ 65 (211)
+..+.+.|+|-||+|||||+|.+.....- ....+-.|++..+.. +.+.... .+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 34678999999999999999998643221 111122244444443 3343333 3678999994
No 446
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.11 E-value=0.0076 Score=47.06 Aligned_cols=139 Identities=18% Similarity=0.112 Sum_probs=73.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCC---------C--C----------CCCCeeeEEEEEEEE----------E-CCEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ---------P--V----------HDLTIGVEFGARMVT----------I-DGRP 54 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~---------~--~----------~~~~~~~~~~~~~~~----------~-~~~~ 54 (211)
-+++++|++|+||||++..+...-.. . . +....+..+... .. + ....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence 58999999999999999887533110 0 0 000011111110 00 0 0124
Q ss_pred EEEEEEeCCCccchhh----chHHHh--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028294 55 IKLQIWDTAGQESFRS----ITRSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 128 (211)
+.+.|+||||...... ....++ ...+-+++|+|++... ..+..+...+.. -.+--++++|.|-...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~----~~~~~~I~TKlDet~~-- 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IHIDGIVFTKFDETAS-- 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC----CCCCEEEEEeecCCCC--
Confidence 5788999999653222 122222 2345688999986431 222233333322 2345778999996442
Q ss_pred CCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028294 129 VSKEEGEQFAKENGLLFLEASARTAQNVEE 158 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 158 (211)
.-.+-..+...+.|+..++ +|.++.+
T Consensus 227 --~G~~l~~~~~~~~Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 227 --SGELLKIPAVSSAPIVLMT--DGQDVKK 252 (270)
T ss_pred --ccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 2234455666788877665 4444443
No 447
>PRK10646 ADP-binding protein; Provisional
Probab=97.09 E-value=0.0045 Score=43.94 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-|++-|+-|+|||||++.+...-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999997543
No 448
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.07 E-value=0.00047 Score=52.03 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-++|+||+|||||||+|.+-+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 37899999999999999887554
No 449
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.07 E-value=0.00068 Score=50.54 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++++||+|||||||++.+-+-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 58999999999999999988554
No 450
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.06 E-value=0.0007 Score=41.36 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~ 29 (211)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998855
No 451
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.03 E-value=0.0037 Score=43.92 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~ 31 (211)
-|++-|+-|+|||||.+.+...-.
T Consensus 27 Vv~L~GdLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 27 VVLLSGDLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred EEEEEcCCcCChHHHHHHHHHHcC
Confidence 478899999999999999975443
No 452
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.02 E-value=0.00057 Score=52.65 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-++++||+|||||||++.+.+-
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3689999999999999999853
No 453
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.01 E-value=0.00042 Score=49.86 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=17.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999865
No 454
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.00 E-value=0.0062 Score=49.14 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=63.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCC------------------CCCCCCCeeeEEEEEE-----EE------------
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF------------------QPVHDLTIGVEFGARM-----VT------------ 49 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~------------------~~~~~~~~~~~~~~~~-----~~------------ 49 (211)
..++|+|+|...+|||||+-.|..... ......++|.++.--. ++
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 357999999999999999866543222 1222223333221110 00
Q ss_pred --ECCEEEEEEEEeCCCccchhhchHH--HhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 50 --IDGRPIKLQIWDTAGQESFRSITRS--YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 50 --~~~~~~~l~l~D~~G~~~~~~~~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
.++..-.+.|+|.+|++.|...... .-+-.|...+++-++...- .+......+.- .-.+|+++|++|+|+-.
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi--GmTKEHLgLAL--aL~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII--GMTKEHLGLAL--ALHVPVFVVVTKIDMCP 287 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce--eccHHhhhhhh--hhcCcEEEEEEeeccCc
Confidence 0111224679999999987763321 1244677777776654311 00011111111 12789999999999743
No 455
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.98 E-value=0.00071 Score=50.39 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=19.9
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHH
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~ 27 (211)
...--.+++||+|||||||++.|-
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHH
Confidence 344457899999999999998876
No 456
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.00069 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.456 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-++|+||+|+|||||++.+++-
T Consensus 32 ~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 32 ITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999973
No 457
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.96 E-value=0.00081 Score=49.11 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHH
Q 028294 7 FKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~ 27 (211)
-.++|+|++|+|||||++.++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 368999999999999999886
No 458
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.95 E-value=0.017 Score=41.20 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+.-
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998653
No 459
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0012 Score=49.63 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-+++||.|+|||||.+.+.++.
T Consensus 33 haiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 33 HAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999875
No 460
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.93 E-value=0.018 Score=45.39 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=19.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHH
Q 028294 7 FKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~ 27 (211)
-.|+|.|.+||||||+++.|-
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 468999999999999999995
No 461
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.92 E-value=0.00088 Score=46.84 Aligned_cols=21 Identities=38% Similarity=0.703 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~ 29 (211)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999854
No 462
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.92 E-value=0.00098 Score=45.81 Aligned_cols=27 Identities=26% Similarity=0.370 Sum_probs=22.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP 33 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~ 33 (211)
-.++++|++|+|||++++.+...-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 468999999999999999998665433
No 463
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.91 E-value=0.00092 Score=49.26 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999754
No 464
>PRK01889 GTPase RsgA; Reviewed
Probab=96.90 E-value=0.0011 Score=54.00 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~ 31 (211)
-+++++|.+|+|||||+|.|.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3689999999999999999997543
No 465
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.00082 Score=53.83 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~~~ 31 (211)
++++||+|||||||++.+.+-.-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999986543
No 466
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.88 E-value=0.00097 Score=44.36 Aligned_cols=20 Identities=40% Similarity=0.745 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 028294 8 KYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~ 27 (211)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 58999999999999999876
No 467
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.87 E-value=0.001 Score=45.60 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~~ 30 (211)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998653
No 468
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.86 E-value=0.0012 Score=50.28 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=23.9
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
|.-...++|+|+|++||||||+.+.|..
T Consensus 1 ~~~~~~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 1 MKLKGPLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 5555678999999999999999999854
No 469
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.86 E-value=0.001 Score=50.20 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57999999999999999998653
No 470
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.85 E-value=0.0018 Score=44.22 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
--|++-|+-|+|||||++.+...-
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999997543
No 471
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.84 E-value=0.0011 Score=48.51 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 472
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.83 E-value=0.015 Score=42.48 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-|.|+|.+|+|||||++.+-.-.
T Consensus 34 VisIIGsSGSGKSTfLRCiN~LE 56 (256)
T COG4598 34 VISIIGSSGSGKSTFLRCINFLE 56 (256)
T ss_pred EEEEecCCCCchhHHHHHHHhhc
Confidence 37899999999999999886443
No 473
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.83 E-value=0.0016 Score=48.93 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=23.3
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.....|+|.|++|||||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999864
No 474
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.82 E-value=0.0011 Score=49.68 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 475
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.0016 Score=52.58 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=26.9
Q ss_pred CEEEEEEEEeCCCccchhhc----hH--HHhccccEEEEEEECCCHHH
Q 028294 52 GRPIKLQIWDTAGQESFRSI----TR--SYYRGAAGALLVYDITRRET 93 (211)
Q Consensus 52 ~~~~~l~l~D~~G~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~~ 93 (211)
..++.+.|+||.|....... .. .-.-..|-+|+|+|++-...
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA 228 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence 35678999999995432221 11 11235789999999987544
No 476
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.82 E-value=0.0012 Score=48.60 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-.++++|++|+|||||++.|++.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999864
No 477
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.81 E-value=0.0012 Score=49.85 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999753
No 478
>PRK06217 hypothetical protein; Validated
Probab=96.81 E-value=0.0012 Score=48.46 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.+|+|+|.+|||||||.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999854
No 479
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.81 E-value=0.009 Score=50.97 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-+++.||+||||||.++.|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3577999999999999998754
No 480
>PRK04195 replication factor C large subunit; Provisional
Probab=96.81 E-value=0.019 Score=48.81 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.-.++|.|++|+|||++++.|...-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999999998653
No 481
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.81 E-value=0.0012 Score=49.38 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 482
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.80 E-value=0.0024 Score=53.29 Aligned_cols=81 Identities=16% Similarity=0.197 Sum_probs=52.7
Q ss_pred chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEE
Q 028294 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFL 146 (211)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 146 (211)
.++.+|. .+..+|++|.++|+.+|--|.. ..+...+... .+.+..++++||+||....+ ......+...++++++
T Consensus 164 ~WRQLWR-VlErSDivvqIVDARnPllfr~-~dLe~Yvke~-d~~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~ni~~v 238 (562)
T KOG1424|consen 164 IWRQLWR-VLERSDIVVQIVDARNPLLFRS-PDLEDYVKEV-DPSKANVLLVNKADLLPPEQ--RVAWAEYFRQNNIPVV 238 (562)
T ss_pred HHHHHHH-HHhhcceEEEEeecCCccccCC-hhHHHHHhcc-ccccceEEEEehhhcCCHHH--HHHHHHHHHhcCceEE
Confidence 3444443 5678999999999999854322 1222222222 23567899999999965332 2345556677889999
Q ss_pred EEeCCC
Q 028294 147 EASART 152 (211)
Q Consensus 147 ~~s~~~ 152 (211)
+.||..
T Consensus 239 f~SA~~ 244 (562)
T KOG1424|consen 239 FFSALA 244 (562)
T ss_pred EEeccc
Confidence 999886
No 483
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.80 E-value=0.055 Score=39.14 Aligned_cols=84 Identities=12% Similarity=-0.025 Sum_probs=50.9
Q ss_pred EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHH
Q 028294 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE 135 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 135 (211)
.+.++|+|+.... .....+..+|.+|++++.... +...+..+++.+.... .....+++|+.+..... ..+..+
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence 6889999986433 344567789999999987653 3444555555554422 34577889999864321 112233
Q ss_pred HHHHHcCCcEE
Q 028294 136 QFAKENGLLFL 146 (211)
Q Consensus 136 ~~~~~~~~~~~ 146 (211)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 44444566654
No 484
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.80 E-value=0.0011 Score=48.87 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998653
No 485
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.80 E-value=0.0013 Score=47.90 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||+|-+.+=
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhc
Confidence 6899999999999999998743
No 486
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.79 E-value=0.00065 Score=59.27 Aligned_cols=120 Identities=18% Similarity=0.129 Sum_probs=72.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEE--------------------------------------
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGA-------------------------------------- 45 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-------------------------------------- 45 (211)
-..+.|+|+|..++||||.++.+.+..+.+....-++....+
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 466899999999999999999999876654322211100000
Q ss_pred ---------------EEEEECC-EEEEEEEEeCCCcc-------------chhhchHHHhccccEEEEEEECCCHHHHHH
Q 028294 46 ---------------RMVTIDG-RPIKLQIWDTAGQE-------------SFRSITRSYYRGAAGALLVYDITRRETFNH 96 (211)
Q Consensus 46 ---------------~~~~~~~-~~~~l~l~D~~G~~-------------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~ 96 (211)
....+.. .-..+.+.|.||.. ....+...|+...+.+|+.+...+-+ -.
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d--~a 184 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSD--IA 184 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhh--hh
Confidence 0000000 11246688999821 23446777888888888888775521 11
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 97 LSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 97 ~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
...++....+....+...+-|++|.|+.+
T Consensus 185 ts~alkiarevDp~g~RTigvitK~Dlmd 213 (657)
T KOG0446|consen 185 TSPALVVAREVDPGGSRTLEVITKFDFMD 213 (657)
T ss_pred cCHHHHHHHhhCCCccchhHHhhhHHhhh
Confidence 23444555555545677788888888754
No 487
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.79 E-value=0.0012 Score=50.42 Aligned_cols=23 Identities=39% Similarity=0.445 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998653
No 488
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.79 E-value=0.0014 Score=46.01 Aligned_cols=22 Identities=18% Similarity=0.434 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.|+|+|+.++|||||++.|+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 489
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.79 E-value=0.0012 Score=45.13 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~ 29 (211)
|+|.|.+||||||+.+.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999755
No 490
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.78 E-value=0.0012 Score=48.13 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.|+|+|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4899999999999999999864
No 491
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.77 E-value=0.0096 Score=44.34 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~~ 30 (211)
|+|+|++|+||||+++.++..-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987553
No 492
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.77 E-value=0.0013 Score=48.91 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~ 29 (211)
|+|.|++|||||||++.|...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999764
No 493
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.76 E-value=0.0014 Score=49.65 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 494
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.76 E-value=0.0013 Score=49.40 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998653
No 495
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.76 E-value=0.0014 Score=48.99 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 496
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.76 E-value=0.0014 Score=49.32 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998753
No 497
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0014 Score=49.32 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998653
No 498
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.00094 Score=48.60 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-.-++|.||+|+|||||+++|+...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3458899999999999999999765
No 499
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.75 E-value=0.0013 Score=49.42 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||||++.+.+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
No 500
>PRK14530 adenylate kinase; Provisional
Probab=96.75 E-value=0.0014 Score=49.41 Aligned_cols=22 Identities=18% Similarity=0.450 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
.+|+|+|++||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
Done!