Query 028294
Match_columns 211
No_of_seqs 142 out of 1893
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 15:09:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.7E-42 9.4E-47 259.3 19.8 167 5-171 12-178 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 1.1E-37 3.9E-42 232.6 23.3 177 1-177 1-179 (206)
3 3cpj_B GTP-binding protein YPT 100.0 2.3E-37 8E-42 233.9 19.9 178 1-178 8-185 (223)
4 3tkl_A RAS-related protein RAB 100.0 7E-35 2.4E-39 215.5 25.3 176 3-178 13-188 (196)
5 2bov_A RAla, RAS-related prote 100.0 1.3E-34 4.5E-39 215.7 24.2 170 4-174 12-182 (206)
6 1vg8_A RAS-related protein RAB 100.0 6.7E-35 2.3E-39 217.5 20.9 171 3-174 5-180 (207)
7 2bme_A RAB4A, RAS-related prot 100.0 3E-34 1E-38 210.4 23.6 176 3-178 7-182 (186)
8 2o52_A RAS-related protein RAB 100.0 1.3E-34 4.4E-39 215.4 21.8 177 1-177 20-196 (200)
9 2fu5_C RAS-related protein RAB 100.0 5.7E-35 2E-39 213.9 18.9 173 2-174 4-176 (183)
10 1zbd_A Rabphilin-3A; G protein 100.0 6.4E-34 2.2E-38 211.7 24.8 174 1-174 3-176 (203)
11 2ew1_A RAS-related protein RAB 100.0 3.2E-34 1.1E-38 213.5 23.1 171 2-172 22-192 (201)
12 2hup_A RAS-related protein RAB 100.0 2.3E-34 7.8E-39 214.2 22.2 171 2-172 25-196 (201)
13 2a5j_A RAS-related protein RAB 100.0 4.8E-34 1.6E-38 210.6 23.3 171 3-173 18-188 (191)
14 2gf9_A RAS-related protein RAB 100.0 7.5E-34 2.6E-38 209.2 23.9 171 2-172 18-188 (189)
15 2oil_A CATX-8, RAS-related pro 100.0 8.9E-34 3E-38 209.4 24.3 172 1-172 20-191 (193)
16 1z0f_A RAB14, member RAS oncog 100.0 6.3E-34 2.2E-38 207.2 22.5 168 2-169 11-178 (179)
17 3tw8_B RAS-related protein RAB 100.0 1.5E-33 5E-38 205.6 23.0 173 2-175 5-177 (181)
18 2efe_B Small GTP-binding prote 100.0 2.8E-33 9.5E-38 204.3 23.0 167 4-170 10-176 (181)
19 1z08_A RAS-related protein RAB 100.0 6.7E-34 2.3E-38 205.5 19.4 167 2-168 2-168 (170)
20 3t5g_A GTP-binding protein RHE 100.0 1.6E-33 5.4E-38 205.8 21.6 170 1-171 1-171 (181)
21 1z0j_A RAB-22, RAS-related pro 100.0 5E-33 1.7E-37 200.8 23.7 166 2-167 2-167 (170)
22 3dz8_A RAS-related protein RAB 100.0 9.6E-35 3.3E-39 214.4 14.9 171 2-172 19-189 (191)
23 1g16_A RAS-related protein SEC 100.0 1.4E-33 4.9E-38 203.6 20.7 167 4-171 1-167 (170)
24 3clv_A RAB5 protein, putative; 100.0 6.1E-33 2.1E-37 206.0 24.2 169 1-172 2-207 (208)
25 1r2q_A RAS-related protein RAB 100.0 4.1E-33 1.4E-37 201.1 22.4 164 4-167 4-167 (170)
26 2fg5_A RAB-22B, RAS-related pr 100.0 1.5E-33 5.3E-38 208.1 20.4 169 2-170 19-187 (192)
27 2f7s_A C25KG, RAS-related prot 100.0 8.3E-34 2.9E-38 213.3 19.3 175 1-175 20-205 (217)
28 2il1_A RAB12; G-protein, GDP, 100.0 1.9E-33 6.4E-38 207.7 20.7 169 2-170 22-191 (192)
29 2g6b_A RAS-related protein RAB 100.0 5.6E-33 1.9E-37 202.6 22.9 169 2-170 6-175 (180)
30 2j0v_A RAC-like GTP-binding pr 100.0 4.2E-34 1.4E-38 214.2 16.5 173 1-175 4-186 (212)
31 1z2a_A RAS-related protein RAB 100.0 3.1E-33 1.1E-37 201.5 20.5 166 3-169 2-167 (168)
32 3bc1_A RAS-related protein RAB 100.0 8.2E-33 2.8E-37 203.8 23.1 171 3-173 8-189 (195)
33 3kkq_A RAS-related protein M-R 100.0 1.4E-32 4.7E-37 201.2 23.9 165 4-169 16-182 (183)
34 4dsu_A GTPase KRAS, isoform 2B 100.0 2.2E-32 7.6E-37 200.8 24.8 169 4-174 2-171 (189)
35 1ek0_A Protein (GTP-binding pr 100.0 9.3E-33 3.2E-37 199.2 22.1 163 5-167 2-167 (170)
36 3cph_A RAS-related protein SEC 100.0 1.4E-32 4.8E-37 205.8 23.8 172 3-175 17-188 (213)
37 2p5s_A RAS and EF-hand domain 100.0 2.7E-33 9.2E-38 207.9 19.1 167 2-168 24-196 (199)
38 2fn4_A P23, RAS-related protei 100.0 2.2E-32 7.7E-37 199.3 23.3 168 4-172 7-175 (181)
39 3oes_A GTPase rhebl1; small GT 100.0 2.8E-33 9.7E-38 208.1 18.4 171 1-172 19-190 (201)
40 2y8e_A RAB-protein 6, GH09086P 100.0 1.1E-32 3.8E-37 200.6 21.0 164 5-168 13-176 (179)
41 2gf0_A GTP-binding protein DI- 100.0 4E-33 1.4E-37 206.5 18.9 164 4-169 6-171 (199)
42 2nzj_A GTP-binding protein REM 100.0 1.8E-32 6.3E-37 198.8 21.8 168 4-172 2-172 (175)
43 2iwr_A Centaurin gamma 1; ANK 100.0 2.8E-32 9.5E-37 198.7 22.8 167 1-174 2-174 (178)
44 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.9E-32 1E-36 198.2 22.5 166 3-169 4-174 (177)
45 1x3s_A RAS-related protein RAB 100.0 4.1E-32 1.4E-36 200.4 23.2 166 5-171 14-180 (195)
46 3cbq_A GTP-binding protein REM 100.0 8E-33 2.7E-37 204.9 19.3 168 3-170 20-189 (195)
47 1z06_A RAS-related protein RAB 100.0 1.9E-32 6.4E-37 201.7 21.1 166 3-168 17-187 (189)
48 3c5c_A RAS-like protein 12; GD 100.0 1.3E-32 4.6E-37 202.4 20.2 164 3-168 18-185 (187)
49 3q85_A GTP-binding protein REM 100.0 2.3E-32 7.8E-37 197.4 20.3 165 6-170 2-168 (169)
50 3reg_A RHO-like small GTPase; 100.0 4E-32 1.4E-36 200.7 21.8 167 2-170 19-189 (194)
51 2atv_A RERG, RAS-like estrogen 100.0 5.1E-32 1.7E-36 200.5 22.0 169 1-171 23-193 (196)
52 2hxs_A RAB-26, RAS-related pro 100.0 6.8E-33 2.3E-37 201.8 16.9 167 3-169 3-173 (178)
53 1ky3_A GTP-binding protein YPT 100.0 1.4E-32 4.9E-37 200.5 18.7 170 2-171 4-180 (182)
54 3ihw_A Centg3; RAS, centaurin, 100.0 1.2E-31 4.3E-36 196.8 23.4 164 2-172 16-183 (184)
55 1u8z_A RAS-related protein RAL 100.0 7.2E-32 2.5E-36 194.1 21.4 164 5-169 3-167 (168)
56 1kao_A RAP2A; GTP-binding prot 100.0 1.1E-31 3.6E-36 193.0 21.2 164 5-169 2-166 (167)
57 2yc2_C IFT27, small RAB-relate 100.0 5.7E-33 2E-37 207.0 15.0 173 2-174 16-197 (208)
58 1c1y_A RAS-related protein RAP 100.0 1.1E-31 3.6E-36 193.3 21.1 162 5-167 2-165 (167)
59 2a9k_A RAS-related protein RAL 100.0 2.3E-31 7.7E-36 194.9 23.2 167 5-172 17-184 (187)
60 3q72_A GTP-binding protein RAD 100.0 1.1E-31 3.8E-36 193.2 20.6 163 6-170 2-165 (166)
61 3q3j_B RHO-related GTP-binding 100.0 4.9E-32 1.7E-36 203.5 19.1 168 3-172 24-206 (214)
62 2atx_A Small GTP binding prote 100.0 1.8E-31 6.2E-36 197.1 21.2 165 2-168 14-192 (194)
63 2q3h_A RAS homolog gene family 100.0 2.1E-31 7.2E-36 197.8 21.4 169 2-172 16-198 (201)
64 2g3y_A GTP-binding protein GEM 100.0 1.2E-31 4.2E-36 200.7 20.1 168 2-170 33-204 (211)
65 1m7b_A RND3/RHOE small GTP-bin 100.0 1.3E-31 4.4E-36 196.5 18.8 166 2-169 3-183 (184)
66 1gwn_A RHO-related GTP-binding 100.0 2.3E-31 7.9E-36 198.6 19.0 165 3-169 25-204 (205)
67 2f9l_A RAB11B, member RAS onco 100.0 3.2E-30 1.1E-34 191.4 24.3 174 3-176 2-175 (199)
68 2erx_A GTP-binding protein DI- 100.0 7.9E-31 2.7E-35 189.5 19.7 162 5-167 2-165 (172)
69 2ce2_X GTPase HRAS; signaling 100.0 4E-30 1.4E-34 184.5 22.9 161 6-168 3-164 (166)
70 2gco_A H9, RHO-related GTP-bin 100.0 1.6E-30 5.6E-35 193.2 21.3 163 4-168 23-199 (201)
71 3con_A GTPase NRAS; structural 100.0 4.6E-30 1.6E-34 188.9 23.3 165 5-171 20-185 (190)
72 4djt_A GTP-binding nuclear pro 100.0 1.6E-31 5.5E-36 200.9 15.7 170 4-173 9-179 (218)
73 3bwd_D RAC-like GTP-binding pr 100.0 6.3E-32 2.2E-36 197.3 13.1 166 1-168 3-180 (182)
74 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.4E-30 8.1E-35 189.4 21.2 163 4-168 3-179 (186)
75 3t1o_A Gliding protein MGLA; G 100.0 1.9E-31 6.6E-36 197.0 15.1 168 2-173 10-196 (198)
76 2cjw_A GTP-binding protein GEM 100.0 2.6E-30 9E-35 190.9 21.2 167 4-171 4-174 (192)
77 2j1l_A RHO-related GTP-binding 100.0 1.5E-30 5.2E-35 195.3 19.8 164 5-170 33-210 (214)
78 2fv8_A H6, RHO-related GTP-bin 100.0 2.9E-30 1E-34 192.7 21.2 164 4-169 23-200 (207)
79 3l0i_B RAS-related protein RAB 100.0 6.7E-34 2.3E-38 211.2 0.6 167 3-169 30-196 (199)
80 4gzl_A RAS-related C3 botulinu 100.0 3.5E-30 1.2E-34 192.0 17.3 162 4-167 28-203 (204)
81 3gj0_A GTP-binding nuclear pro 100.0 6.7E-31 2.3E-35 198.0 13.3 167 3-172 12-178 (221)
82 1oix_A RAS-related protein RAB 100.0 5.2E-29 1.8E-33 183.8 23.1 166 2-167 25-190 (191)
83 4bas_A ADP-ribosylation factor 100.0 2.3E-30 7.9E-35 191.6 13.9 163 3-171 14-191 (199)
84 1upt_A ARL1, ADP-ribosylation 100.0 1.5E-29 5.1E-34 182.8 13.6 159 4-169 5-169 (171)
85 1r8s_A ADP-ribosylation factor 100.0 5.4E-30 1.9E-34 184.0 10.7 156 7-169 1-162 (164)
86 2h57_A ADP-ribosylation factor 100.0 1.5E-28 5E-33 181.0 17.9 159 4-168 19-186 (190)
87 1f6b_A SAR1; gtpases, N-termin 100.0 4.6E-29 1.6E-33 185.1 15.2 155 5-166 24-196 (198)
88 1zd9_A ADP-ribosylation factor 100.0 8.7E-30 3E-34 187.4 11.1 160 4-169 20-185 (188)
89 1m2o_B GTP-binding protein SAR 100.0 1.5E-28 5.2E-33 181.1 17.7 155 5-166 22-189 (190)
90 1ksh_A ARF-like protein 2; sma 100.0 1.8E-28 6.2E-33 179.7 17.5 160 4-170 16-181 (186)
91 2zej_A Dardarin, leucine-rich 100.0 1.5E-29 5.2E-34 185.5 9.8 163 6-169 2-178 (184)
92 1zj6_A ADP-ribosylation factor 100.0 3E-28 1E-32 178.8 16.4 160 4-170 14-179 (187)
93 2wkq_A NPH1-1, RAS-related C3 100.0 1.3E-27 4.5E-32 190.1 21.3 163 5-169 154-330 (332)
94 2b6h_A ADP-ribosylation factor 100.0 2.8E-29 9.6E-34 185.4 10.7 158 4-168 27-190 (192)
95 1fzq_A ADP-ribosylation factor 100.0 3.8E-28 1.3E-32 177.6 15.5 159 4-169 14-178 (181)
96 2h17_A ADP-ribosylation factor 100.0 2.1E-28 7.3E-33 178.8 14.1 156 4-166 19-180 (181)
97 2x77_A ADP-ribosylation factor 100.0 3.1E-29 1.1E-33 184.3 9.1 160 4-170 20-185 (189)
98 3llu_A RAS-related GTP-binding 100.0 2E-28 6.9E-33 181.2 12.5 162 3-167 17-195 (196)
99 3th5_A RAS-related C3 botulinu 99.9 9.8E-31 3.3E-35 194.8 0.0 162 4-167 28-203 (204)
100 1moz_A ARL1, ADP-ribosylation 100.0 5.7E-28 2E-32 176.4 14.8 161 4-171 16-182 (183)
101 2qu8_A Putative nucleolar GTP- 99.9 1.4E-26 4.7E-31 175.3 18.0 167 4-173 27-209 (228)
102 2wji_A Ferrous iron transport 99.9 4.7E-27 1.6E-31 169.3 14.5 153 6-167 3-163 (165)
103 2fh5_B SR-beta, signal recogni 99.9 2.3E-27 7.9E-32 177.7 12.1 160 4-166 5-213 (214)
104 3c5h_A Glucocorticoid receptor 99.9 3.3E-28 1.1E-32 187.2 7.2 164 2-167 15-253 (255)
105 2lkc_A Translation initiation 99.9 1.2E-26 4.3E-31 168.5 13.7 159 4-171 6-173 (178)
106 3r7w_A Gtpase1, GTP-binding pr 99.9 2.7E-26 9.1E-31 181.0 14.6 160 5-168 2-180 (307)
107 1svi_A GTP-binding protein YSX 99.9 1.9E-26 6.6E-31 170.1 12.9 159 2-167 19-193 (195)
108 3o47_A ADP-ribosylation factor 99.9 2.4E-27 8.1E-32 188.7 6.8 158 5-169 164-327 (329)
109 2wjg_A FEOB, ferrous iron tran 99.9 7.6E-26 2.6E-30 165.9 13.4 159 4-171 5-171 (188)
110 2cxx_A Probable GTP-binding pr 99.9 3.6E-26 1.2E-30 167.8 11.3 157 7-172 2-187 (190)
111 3lvq_E ARF-GAP with SH3 domain 99.9 2.3E-26 7.7E-31 192.6 11.5 162 4-172 320-487 (497)
112 3r7w_B Gtpase2, GTP-binding pr 99.9 2.8E-27 9.6E-32 185.8 4.5 158 8-172 1-177 (331)
113 2dyk_A GTP-binding protein; GT 99.9 1.4E-25 5E-30 160.2 11.9 150 7-167 2-160 (161)
114 2gj8_A MNME, tRNA modification 99.9 6.4E-26 2.2E-30 164.5 9.8 153 5-167 3-164 (172)
115 3dpu_A RAB family protein; roc 99.9 3.9E-26 1.3E-30 192.7 9.1 166 1-170 36-209 (535)
116 3iev_A GTP-binding protein ERA 99.9 1.1E-24 3.6E-29 172.0 16.5 163 2-168 6-181 (308)
117 3a1s_A Iron(II) transport prot 99.9 5.8E-25 2E-29 169.3 14.5 156 4-168 3-166 (258)
118 3pqc_A Probable GTP-binding pr 99.9 8.3E-25 2.8E-29 161.0 13.4 157 2-168 19-193 (195)
119 3b1v_A Ferrous iron uptake tra 99.9 2.7E-25 9.3E-30 172.2 11.0 153 5-167 2-162 (272)
120 3iby_A Ferrous iron transport 99.9 2.3E-25 8E-30 171.3 9.7 151 7-166 2-164 (256)
121 4dhe_A Probable GTP-binding pr 99.9 7.5E-25 2.6E-29 164.9 10.4 165 3-171 26-213 (223)
122 3i8s_A Ferrous iron transport 99.9 1.2E-24 4.1E-29 169.0 9.3 154 5-167 2-167 (274)
123 3k53_A Ferrous iron transport 99.9 5.2E-24 1.8E-28 165.2 12.2 156 5-168 2-165 (271)
124 1nrj_B SR-beta, signal recogni 99.9 1.3E-24 4.3E-29 163.2 6.5 144 3-155 9-170 (218)
125 2hjg_A GTP-binding protein ENG 99.9 2.4E-23 8.1E-28 171.6 13.8 161 4-170 173-350 (436)
126 1wf3_A GTP-binding protein; GT 99.9 2.2E-23 7.4E-28 163.8 10.7 156 5-167 6-171 (301)
127 2e87_A Hypothetical protein PH 99.9 2.1E-22 7.3E-27 161.9 16.2 163 5-172 166-339 (357)
128 4dcu_A GTP-binding protein ENG 99.9 6.1E-23 2.1E-27 170.0 13.4 162 4-171 193-371 (456)
129 3gee_A MNME, tRNA modification 99.9 5.8E-23 2E-27 170.1 12.5 157 5-168 232-397 (476)
130 1mky_A Probable GTP-binding pr 99.9 1.8E-22 6.3E-27 166.4 14.1 151 7-169 2-166 (439)
131 1lnz_A SPO0B-associated GTP-bi 99.9 6.4E-23 2.2E-27 163.4 9.2 157 7-168 159-329 (342)
132 3qq5_A Small GTP-binding prote 99.9 2.3E-23 7.8E-28 170.0 4.9 158 4-170 32-197 (423)
133 3sjy_A Translation initiation 99.9 2.4E-21 8.2E-26 158.1 16.8 163 2-167 4-190 (403)
134 3lxx_A GTPase IMAP family memb 99.9 1.3E-21 4.6E-26 148.9 14.1 162 4-169 27-214 (239)
135 1xzp_A Probable tRNA modificat 99.9 8E-22 2.7E-26 163.5 13.6 154 6-170 243-406 (482)
136 2ywe_A GTP-binding protein LEP 99.9 2.6E-21 9E-26 163.6 16.4 162 1-168 1-183 (600)
137 1s0u_A EIF-2-gamma, translatio 99.9 5.5E-21 1.9E-25 156.2 17.1 161 1-167 3-196 (408)
138 1cip_A Protein (guanine nucleo 99.9 2.6E-22 8.8E-27 160.4 9.1 118 54-171 192-346 (353)
139 3lxw_A GTPase IMAP family memb 99.9 2E-21 6.9E-26 148.6 12.8 165 4-170 19-209 (247)
140 3cb4_D GTP-binding protein LEP 99.9 2.6E-21 8.7E-26 164.0 14.5 159 4-168 2-181 (599)
141 2hjg_A GTP-binding protein ENG 99.9 1.2E-22 4.1E-27 167.4 6.1 153 6-168 3-164 (436)
142 2qtf_A Protein HFLX, GTP-bindi 99.9 1.1E-20 3.9E-25 151.7 16.7 160 8-170 181-355 (364)
143 1wb1_A Translation elongation 99.9 4.7E-21 1.6E-25 159.4 14.5 155 5-168 18-188 (482)
144 3t5d_A Septin-7; GTP-binding p 99.9 6.5E-22 2.2E-26 153.6 8.3 160 3-166 5-201 (274)
145 3ohm_A Guanine nucleotide-bind 99.9 8.2E-22 2.8E-26 155.5 8.1 118 54-171 166-320 (327)
146 2xtp_A GTPase IMAP family memb 99.9 2.7E-21 9.1E-26 149.0 10.3 162 5-170 21-209 (260)
147 1mky_A Probable GTP-binding pr 99.9 3.9E-20 1.3E-24 152.5 17.9 160 5-170 179-356 (439)
148 1kk1_A EIF2gamma; initiation o 99.8 8.3E-21 2.8E-25 155.3 13.3 159 3-167 7-198 (410)
149 3p26_A Elongation factor 1 alp 99.8 3.3E-21 1.1E-25 160.6 10.9 153 5-159 32-228 (483)
150 2xtz_A Guanine nucleotide-bind 99.8 5.1E-21 1.7E-25 152.9 11.4 120 53-172 181-348 (354)
151 1ega_A Protein (GTP-binding pr 99.8 1.9E-21 6.3E-26 152.9 8.7 156 5-167 7-173 (301)
152 3geh_A MNME, tRNA modification 99.8 1.4E-21 4.8E-26 161.3 8.1 153 5-169 223-384 (462)
153 2qag_A Septin-2, protein NEDD5 99.8 6.4E-22 2.2E-26 159.1 5.7 168 4-177 35-241 (361)
154 2ged_A SR-beta, signal recogni 99.8 5.7E-21 1.9E-25 140.4 9.6 115 4-127 46-172 (193)
155 4dcu_A GTP-binding protein ENG 99.8 1.1E-21 3.9E-26 162.4 5.1 153 5-167 22-183 (456)
156 3j2k_7 ERF3, eukaryotic polype 99.8 3.4E-20 1.2E-24 152.7 13.8 154 5-161 16-217 (439)
157 1zcb_A G alpha I/13; GTP-bindi 99.8 6.6E-21 2.3E-25 152.8 9.3 119 54-172 200-356 (362)
158 1jny_A EF-1-alpha, elongation 99.8 3.3E-21 1.1E-25 158.6 7.3 160 1-161 1-205 (435)
159 3izy_P Translation initiation 99.8 9.7E-23 3.3E-27 170.4 -2.0 160 4-168 2-167 (537)
160 2elf_A Protein translation elo 99.8 9.1E-21 3.1E-25 152.7 9.4 147 8-170 23-181 (370)
161 1zun_B Sulfate adenylate trans 99.8 2.2E-20 7.4E-25 153.8 11.1 155 4-161 22-216 (434)
162 2c78_A Elongation factor TU-A; 99.8 5.5E-21 1.9E-25 156.1 7.4 148 4-155 9-180 (405)
163 4fid_A G protein alpha subunit 99.8 1.1E-20 3.9E-25 149.5 8.5 121 49-169 155-328 (340)
164 3tr5_A RF-3, peptide chain rel 99.8 1.3E-20 4.5E-25 157.9 9.0 117 5-125 12-148 (528)
165 1g7s_A Translation initiation 99.8 9.6E-20 3.3E-24 154.4 13.5 160 5-171 4-220 (594)
166 1d2e_A Elongation factor TU (E 99.8 2.1E-20 7.3E-25 152.2 8.8 158 6-167 3-193 (397)
167 1r5b_A Eukaryotic peptide chai 99.8 7.4E-21 2.5E-25 157.7 3.5 157 4-160 41-243 (467)
168 2aka_B Dynamin-1; fusion prote 99.8 3.4E-20 1.2E-24 145.4 6.8 161 4-167 24-251 (299)
169 1pui_A ENGB, probable GTP-bind 99.8 2.3E-19 7.8E-24 133.6 10.5 156 3-167 23-197 (210)
170 3izq_1 HBS1P, elongation facto 99.8 1.6E-20 5.5E-25 160.0 3.9 155 5-159 166-362 (611)
171 3avx_A Elongation factor TS, e 99.8 1.9E-19 6.5E-24 159.7 9.3 160 4-167 294-484 (1289)
172 1f60_A Elongation factor EEF1A 99.8 3.3E-19 1.1E-23 147.5 9.9 156 1-159 1-202 (458)
173 3def_A T7I23.11 protein; chlor 99.8 3.9E-18 1.3E-22 131.5 14.9 125 5-132 35-172 (262)
174 1zo1_I IF2, translation initia 99.8 5.5E-21 1.9E-25 158.6 -2.0 153 4-165 2-163 (501)
175 2dy1_A Elongation factor G; tr 99.8 3E-18 1E-22 147.5 14.0 117 4-124 7-139 (665)
176 1udx_A The GTP-binding protein 99.8 3.8E-18 1.3E-22 138.9 12.4 161 7-171 158-327 (416)
177 1h65_A Chloroplast outer envel 99.8 4E-18 1.4E-22 132.0 11.7 126 5-132 38-175 (270)
178 3t34_A Dynamin-related protein 99.8 6.7E-19 2.3E-23 141.7 7.4 158 5-164 33-256 (360)
179 2j69_A Bacterial dynamin-like 99.8 6E-18 2.1E-22 146.2 13.1 162 5-169 68-325 (695)
180 2h5e_A Peptide chain release f 99.8 1E-17 3.5E-22 140.5 14.0 117 5-125 12-148 (529)
181 1dar_A EF-G, elongation factor 99.8 6.6E-18 2.3E-22 145.9 12.6 119 3-125 9-143 (691)
182 2qnr_A Septin-2, protein NEDD5 99.7 5.1E-19 1.7E-23 138.9 3.9 165 4-173 16-218 (301)
183 3mca_A HBS1, elongation factor 99.7 5.5E-20 1.9E-24 156.2 -1.9 150 5-157 176-371 (592)
184 1jwy_B Dynamin A GTPase domain 99.7 1.5E-17 5.2E-22 131.3 11.1 161 5-168 23-261 (315)
185 2rdo_7 EF-G, elongation factor 99.7 1.8E-16 6.2E-21 137.2 17.3 118 4-125 8-148 (704)
186 2xex_A Elongation factor G; GT 99.7 4.2E-17 1.4E-21 141.0 12.9 117 3-125 7-141 (693)
187 1azs_C GS-alpha; complex (lyas 99.7 6.1E-17 2.1E-21 130.9 12.6 131 38-172 204-388 (402)
188 2qag_C Septin-7; cell cycle, c 99.7 9.1E-18 3.1E-22 136.7 7.0 158 5-166 30-224 (418)
189 1wxq_A GTP-binding protein; st 99.7 1E-17 3.4E-22 136.0 6.9 85 7-91 1-114 (397)
190 1u0l_A Probable GTPase ENGC; p 99.7 5.4E-18 1.8E-22 133.1 3.6 133 21-164 32-168 (301)
191 1jal_A YCHF protein; nucleotid 99.7 2.9E-15 9.9E-20 119.6 15.2 145 7-151 3-239 (363)
192 2wsm_A Hydrogenase expression/ 99.6 9.5E-17 3.2E-21 120.4 5.2 155 5-170 29-215 (221)
193 2x2e_A Dynamin-1; nitration, h 99.6 5E-17 1.7E-21 130.4 3.6 158 5-165 30-254 (353)
194 1n0u_A EF-2, elongation factor 99.6 1.3E-15 4.4E-20 134.2 10.0 118 3-124 16-163 (842)
195 3vqt_A RF-3, peptide chain rel 99.6 7.5E-15 2.6E-19 123.7 12.2 117 5-125 30-166 (548)
196 2qpt_A EH domain-containing pr 99.6 1.7E-15 6E-20 127.6 7.2 120 4-126 63-233 (550)
197 2hf9_A Probable hydrogenase ni 99.6 2.4E-17 8.4E-22 124.0 -3.7 154 5-169 37-224 (226)
198 2dby_A GTP-binding protein; GD 99.6 7.2E-15 2.5E-19 117.9 10.1 155 7-161 2-254 (368)
199 3p32_A Probable GTPase RV1496/ 99.6 8.4E-16 2.9E-20 123.3 4.5 105 55-170 172-285 (355)
200 4a9a_A Ribosome-interacting GT 99.6 1.6E-13 5.5E-18 110.1 15.8 152 5-160 71-239 (376)
201 2www_A Methylmalonic aciduria 99.5 5.3E-15 1.8E-19 118.3 4.4 103 55-169 167-279 (349)
202 3j25_A Tetracycline resistance 99.5 5.5E-15 1.9E-19 126.8 3.3 115 7-125 3-133 (638)
203 1yrb_A ATP(GTP)binding protein 99.5 2.7E-13 9.3E-18 104.0 11.2 109 55-168 109-256 (262)
204 3zvr_A Dynamin-1; hydrolase, D 99.5 9.3E-14 3.2E-18 120.0 8.7 158 5-166 50-275 (772)
205 2p67_A LAO/AO transport system 99.5 1.8E-14 6.1E-19 115.0 2.6 103 55-168 149-260 (341)
206 4fn5_A EF-G 1, elongation fact 99.4 3.7E-12 1.3E-16 110.6 16.1 117 4-124 11-150 (709)
207 2yv5_A YJEQ protein; hydrolase 99.4 6.9E-13 2.4E-17 104.0 7.7 96 65-163 66-163 (302)
208 2qm8_A GTPase/ATPase; G protei 99.4 2.7E-12 9.2E-17 102.1 9.9 104 54-168 147-260 (337)
209 1ni3_A YCHF GTPase, YCHF GTP-b 99.4 2.2E-11 7.4E-16 98.4 15.1 86 5-90 19-127 (392)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 1.3E-12 4.4E-17 105.3 5.9 88 5-92 21-130 (396)
211 3l82_B F-box only protein 4; T 99.3 5.4E-12 1.9E-16 92.4 6.1 103 63-168 110-222 (227)
212 3l2o_B F-box only protein 4; s 99.1 1.3E-10 4.3E-15 89.2 8.4 105 62-168 194-307 (312)
213 3h2y_A GTPase family protein; 99.0 7.5E-10 2.6E-14 89.0 9.3 96 64-166 55-157 (368)
214 3ec1_A YQEH GTPase; atnos1, at 99.0 4.6E-11 1.6E-15 96.2 -1.1 139 7-155 163-317 (369)
215 2qag_B Septin-6, protein NEDD5 99.0 5.9E-09 2E-13 84.8 11.0 139 7-150 43-217 (427)
216 1puj_A YLQF, conserved hypothe 98.9 2.2E-09 7.5E-14 83.2 7.2 102 59-170 3-107 (282)
217 3ec1_A YQEH GTPase; atnos1, at 98.9 2.3E-09 7.9E-14 86.2 6.7 98 63-167 56-160 (369)
218 3h2y_A GTPase family protein; 98.9 5.4E-11 1.9E-15 95.7 -4.0 135 7-149 161-310 (368)
219 2j37_W Signal recognition part 98.8 1.9E-08 6.4E-13 83.7 9.7 151 5-166 100-310 (504)
220 3sop_A Neuronal-specific septi 98.8 2.1E-08 7.2E-13 77.2 8.8 137 6-147 2-178 (270)
221 1tq4_A IIGP1, interferon-induc 98.8 2.3E-07 7.8E-12 75.4 14.0 157 6-169 69-253 (413)
222 1puj_A YLQF, conserved hypothe 98.6 4.9E-08 1.7E-12 75.6 5.3 58 5-66 119-176 (282)
223 3cnl_A YLQF, putative uncharac 98.5 3.5E-08 1.2E-12 75.6 2.9 57 7-67 100-156 (262)
224 3cnl_A YLQF, putative uncharac 98.4 6.9E-08 2.3E-12 74.0 1.6 93 62-165 4-97 (262)
225 3dm5_A SRP54, signal recogniti 98.4 2.2E-06 7.4E-11 70.1 9.9 86 55-150 183-274 (443)
226 1f5n_A Interferon-induced guan 98.2 1.7E-06 5.9E-11 73.2 5.8 63 5-67 37-103 (592)
227 3kl4_A SRP54, signal recogniti 98.2 9E-07 3.1E-11 72.3 4.0 91 54-156 179-277 (433)
228 1t9h_A YLOQ, probable GTPase E 98.2 5.4E-07 1.8E-11 70.4 2.0 89 70-161 78-169 (307)
229 2v3c_C SRP54, signal recogniti 98.1 1E-05 3.5E-10 66.2 8.9 85 54-149 180-272 (432)
230 3szr_A Interferon-induced GTP- 98.0 1.2E-05 4E-10 68.8 8.1 24 7-30 46-69 (608)
231 1j8m_F SRP54, signal recogniti 98.0 1.4E-05 5E-10 62.1 7.7 92 54-158 180-280 (297)
232 2rcn_A Probable GTPase ENGC; Y 97.9 2.9E-05 1E-09 61.8 7.9 84 75-162 127-212 (358)
233 3e70_C DPA, signal recognition 97.8 4.8E-05 1.6E-09 60.0 7.7 91 56-158 213-309 (328)
234 1bif_A 6-phosphofructo-2-kinas 97.8 1.6E-06 5.4E-11 71.9 -1.6 113 5-122 38-160 (469)
235 3q5d_A Atlastin-1; G protein, 97.6 7.4E-05 2.5E-09 61.3 5.2 25 5-29 66-90 (447)
236 1ye8_A Protein THEP1, hypothet 97.5 7.3E-05 2.5E-09 53.7 3.4 24 7-30 1-24 (178)
237 3asz_A Uridine kinase; cytidin 97.3 0.00013 4.4E-09 53.5 3.5 29 1-29 1-29 (211)
238 1kgd_A CASK, peripheral plasma 97.3 0.00012 4.2E-09 52.4 3.2 22 8-29 7-28 (180)
239 1lvg_A Guanylate kinase, GMP k 97.3 0.00012 4.3E-09 53.3 3.2 22 7-28 5-26 (198)
240 3ney_A 55 kDa erythrocyte memb 97.3 0.00017 5.9E-09 52.5 3.7 28 2-29 15-42 (197)
241 2j41_A Guanylate kinase; GMP, 97.3 0.00017 5.8E-09 52.6 3.6 30 1-30 1-30 (207)
242 2rcn_A Probable GTPase ENGC; Y 97.3 0.0002 7E-09 57.0 4.1 24 8-31 217-240 (358)
243 1t9h_A YLOQ, probable GTPase E 97.3 7E-05 2.4E-09 58.5 1.3 23 8-30 175-197 (307)
244 3a00_A Guanylate kinase, GMP k 97.2 0.00017 5.8E-09 52.0 3.1 21 9-29 4-24 (186)
245 3tr0_A Guanylate kinase, GMP k 97.2 0.0002 6.7E-09 52.2 3.2 22 8-29 9-30 (205)
246 1znw_A Guanylate kinase, GMP k 97.2 0.0002 6.8E-09 52.5 3.2 23 8-30 22-44 (207)
247 4eun_A Thermoresistant glucoki 97.2 0.00023 7.8E-09 51.9 3.4 29 1-29 24-52 (200)
248 1s96_A Guanylate kinase, GMP k 97.2 0.00022 7.5E-09 53.0 3.2 23 8-30 18-40 (219)
249 1zp6_A Hypothetical protein AT 97.2 0.00027 9.3E-09 50.8 3.5 24 6-29 9-32 (191)
250 1z6g_A Guanylate kinase; struc 97.2 0.00023 8E-09 52.7 3.2 23 8-30 25-47 (218)
251 2xxa_A Signal recognition part 97.1 0.013 4.4E-07 47.9 13.5 83 54-147 183-272 (433)
252 2yv5_A YJEQ protein; hydrolase 97.1 0.00079 2.7E-08 52.4 6.1 22 8-30 167-188 (302)
253 1htw_A HI0065; nucleotide-bind 97.1 0.00027 9.3E-09 49.7 3.2 23 8-30 35-57 (158)
254 4gp7_A Metallophosphoesterase; 97.1 0.00024 8.3E-09 50.5 2.6 20 8-27 11-30 (171)
255 3tif_A Uncharacterized ABC tra 97.1 0.00028 9.4E-09 53.0 3.0 23 8-30 33-55 (235)
256 3tau_A Guanylate kinase, GMP k 97.0 0.00036 1.2E-08 51.2 3.3 24 7-30 9-32 (208)
257 3c8u_A Fructokinase; YP_612366 97.0 0.00033 1.1E-08 51.3 2.9 25 5-29 21-45 (208)
258 2pcj_A ABC transporter, lipopr 97.0 0.00033 1.1E-08 52.2 2.9 23 8-30 32-54 (224)
259 1ex7_A Guanylate kinase; subst 97.0 0.00041 1.4E-08 50.1 3.2 21 9-29 4-24 (186)
260 2onk_A Molybdate/tungstate ABC 97.0 0.00041 1.4E-08 52.2 3.2 23 8-30 26-48 (240)
261 1sgw_A Putative ABC transporte 97.0 0.00041 1.4E-08 51.3 3.0 23 8-30 37-59 (214)
262 1b0u_A Histidine permease; ABC 97.0 0.00042 1.4E-08 52.9 3.0 23 8-30 34-56 (262)
263 3gfo_A Cobalt import ATP-bindi 97.0 0.00042 1.4E-08 53.2 3.0 23 8-30 36-58 (275)
264 2cbz_A Multidrug resistance-as 96.9 0.00045 1.5E-08 51.9 3.0 22 8-29 33-54 (237)
265 2bdt_A BH3686; alpha-beta prot 96.9 0.00053 1.8E-08 49.3 3.2 21 8-28 4-24 (189)
266 1g6h_A High-affinity branched- 96.9 0.00046 1.6E-08 52.5 3.0 23 8-30 35-57 (257)
267 2i3b_A HCR-ntpase, human cance 96.9 0.00053 1.8E-08 49.6 3.1 22 8-29 3-24 (189)
268 2pze_A Cystic fibrosis transme 96.9 0.0005 1.7E-08 51.4 3.0 23 8-30 36-58 (229)
269 4g1u_C Hemin import ATP-bindin 96.9 0.00047 1.6E-08 52.7 2.9 23 8-30 39-61 (266)
270 2olj_A Amino acid ABC transpor 96.9 0.0005 1.7E-08 52.5 3.0 22 8-29 52-73 (263)
271 1knq_A Gluconate kinase; ALFA/ 96.9 0.00082 2.8E-08 47.6 4.0 23 6-28 8-30 (175)
272 1ji0_A ABC transporter; ATP bi 96.9 0.0005 1.7E-08 51.7 3.0 23 8-30 34-56 (240)
273 1mv5_A LMRA, multidrug resista 96.9 0.00057 1.9E-08 51.5 3.2 23 8-30 30-52 (243)
274 1vpl_A ABC transporter, ATP-bi 96.9 0.00052 1.8E-08 52.2 3.0 23 8-30 43-65 (256)
275 2ff7_A Alpha-hemolysin translo 96.9 0.00057 1.9E-08 51.7 3.2 23 8-30 37-59 (247)
276 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00057 2E-08 51.7 3.2 22 8-29 31-52 (250)
277 2qi9_C Vitamin B12 import ATP- 96.9 0.00054 1.9E-08 51.8 3.0 23 8-30 28-50 (249)
278 1kag_A SKI, shikimate kinase I 96.9 0.00064 2.2E-08 48.0 3.2 23 7-29 5-27 (173)
279 2zu0_C Probable ATP-dependent 96.9 0.0006 2.1E-08 52.1 3.2 22 8-29 48-69 (267)
280 1y63_A LMAJ004144AAA protein; 96.9 0.00074 2.5E-08 48.5 3.5 29 1-29 5-33 (184)
281 3b85_A Phosphate starvation-in 96.8 0.00043 1.5E-08 50.9 2.2 22 8-29 24-45 (208)
282 2qor_A Guanylate kinase; phosp 96.8 0.00066 2.3E-08 49.5 3.2 23 7-29 13-35 (204)
283 2eyu_A Twitching motility prot 96.8 0.00065 2.2E-08 51.8 3.2 22 8-29 27-48 (261)
284 2ihy_A ABC transporter, ATP-bi 96.8 0.00066 2.2E-08 52.3 3.2 23 8-30 49-71 (279)
285 2ghi_A Transport protein; mult 96.8 0.00067 2.3E-08 51.7 3.2 22 8-29 48-69 (260)
286 2ixe_A Antigen peptide transpo 96.8 0.00063 2.2E-08 52.1 3.0 23 8-30 47-69 (271)
287 2nq2_C Hypothetical ABC transp 96.8 0.00065 2.2E-08 51.5 3.0 23 8-30 33-55 (253)
288 2yz2_A Putative ABC transporte 96.8 0.00068 2.3E-08 51.8 3.0 23 8-30 35-57 (266)
289 2bbw_A Adenylate kinase 4, AK4 96.8 0.00082 2.8E-08 50.5 3.4 21 7-27 28-48 (246)
290 1qf9_A UMP/CMP kinase, protein 96.8 0.001 3.5E-08 47.6 3.8 28 1-28 1-28 (194)
291 2v9p_A Replication protein E1; 96.8 0.0008 2.7E-08 52.4 3.3 22 8-29 128-149 (305)
292 3lw7_A Adenylate kinase relate 96.8 0.00089 3.1E-08 47.1 3.2 20 7-26 2-21 (179)
293 2pjz_A Hypothetical protein ST 96.7 0.00088 3E-08 51.1 3.2 23 8-30 32-54 (263)
294 2ehv_A Hypothetical protein PH 96.7 0.00091 3.1E-08 50.1 3.2 20 8-27 32-51 (251)
295 4a74_A DNA repair and recombin 96.7 0.0009 3.1E-08 49.4 3.0 23 8-30 27-49 (231)
296 3ec2_A DNA replication protein 96.7 0.0009 3.1E-08 47.7 2.9 23 7-29 39-61 (180)
297 3aez_A Pantothenate kinase; tr 96.7 0.00095 3.3E-08 52.2 3.2 25 5-29 89-113 (312)
298 1nn5_A Similar to deoxythymidy 96.7 0.001 3.5E-08 48.6 3.2 28 1-28 4-31 (215)
299 3lnc_A Guanylate kinase, GMP k 96.7 0.0006 2E-08 50.8 1.9 23 7-29 28-51 (231)
300 3kb2_A SPBC2 prophage-derived 96.7 0.0011 3.6E-08 46.7 3.2 22 8-29 3-24 (173)
301 1ly1_A Polynucleotide kinase; 96.7 0.0013 4.3E-08 46.7 3.6 22 7-28 3-24 (181)
302 3fb4_A Adenylate kinase; psych 96.7 0.0011 3.7E-08 48.7 3.2 22 7-28 1-22 (216)
303 1u0l_A Probable GTPase ENGC; p 96.7 0.0012 4E-08 51.4 3.5 24 8-31 171-194 (301)
304 1cke_A CK, MSSA, protein (cyti 96.7 0.0013 4.4E-08 48.6 3.6 23 6-28 5-27 (227)
305 3uie_A Adenylyl-sulfate kinase 96.7 0.00092 3.1E-08 48.6 2.7 24 6-29 25-48 (200)
306 2jeo_A Uridine-cytidine kinase 96.7 0.0013 4.5E-08 49.4 3.6 24 5-28 24-47 (245)
307 3fvq_A Fe(3+) IONS import ATP- 96.6 0.001 3.4E-08 53.0 3.1 23 8-30 32-54 (359)
308 2if2_A Dephospho-COA kinase; a 96.6 0.0012 4.1E-08 48.0 3.3 22 7-28 2-23 (204)
309 3dl0_A Adenylate kinase; phosp 96.6 0.0012 3.9E-08 48.6 3.2 22 7-28 1-22 (216)
310 1np6_A Molybdopterin-guanine d 96.6 0.0012 4.3E-08 47.0 3.2 23 7-29 7-29 (174)
311 2bbs_A Cystic fibrosis transme 96.6 0.0011 3.8E-08 51.3 3.0 22 8-29 66-87 (290)
312 3t61_A Gluconokinase; PSI-biol 96.6 0.0013 4.3E-08 47.9 3.2 23 7-29 19-41 (202)
313 1z47_A CYSA, putative ABC-tran 96.6 0.0012 4.1E-08 52.5 3.2 23 8-30 43-65 (355)
314 1jjv_A Dephospho-COA kinase; P 96.6 0.0015 5.2E-08 47.5 3.6 22 7-28 3-24 (206)
315 3cm0_A Adenylate kinase; ATP-b 96.6 0.0017 5.9E-08 46.3 3.8 23 6-28 4-26 (186)
316 3tui_C Methionine import ATP-b 96.6 0.0013 4.3E-08 52.6 3.2 23 8-30 56-78 (366)
317 3vaa_A Shikimate kinase, SK; s 96.6 0.0015 5.1E-08 47.4 3.4 22 7-28 26-47 (199)
318 1lw7_A Transcriptional regulat 96.6 0.0011 3.7E-08 53.0 2.8 24 6-29 170-193 (365)
319 3nh6_A ATP-binding cassette SU 96.6 0.00077 2.6E-08 52.6 1.9 22 8-29 82-103 (306)
320 2yyz_A Sugar ABC transporter, 96.6 0.0013 4.4E-08 52.5 3.2 23 8-30 31-53 (359)
321 3rlf_A Maltose/maltodextrin im 96.6 0.0013 4.5E-08 52.7 3.2 23 8-30 31-53 (381)
322 2it1_A 362AA long hypothetical 96.6 0.0013 4.6E-08 52.4 3.2 23 8-30 31-53 (362)
323 2jaq_A Deoxyguanosine kinase; 96.6 0.0016 5.3E-08 47.2 3.4 21 8-28 2-22 (205)
324 1qhx_A CPT, protein (chloramph 96.5 0.0014 4.9E-08 46.4 3.1 23 7-29 4-26 (178)
325 3sr0_A Adenylate kinase; phosp 96.5 0.0016 5.5E-08 47.8 3.3 22 7-28 1-22 (206)
326 3co5_A Putative two-component 96.5 0.0046 1.6E-07 42.4 5.5 23 7-29 28-50 (143)
327 3iij_A Coilin-interacting nucl 96.5 0.0018 6.2E-08 46.1 3.4 24 5-28 10-33 (180)
328 2f1r_A Molybdopterin-guanine d 96.5 0.00072 2.5E-08 48.1 1.3 22 8-29 4-25 (171)
329 1g29_1 MALK, maltose transport 96.5 0.0015 5E-08 52.4 3.2 23 8-30 31-53 (372)
330 2v54_A DTMP kinase, thymidylat 96.5 0.0021 7.3E-08 46.5 3.9 24 6-29 4-27 (204)
331 1v43_A Sugar-binding transport 96.5 0.0015 5.2E-08 52.3 3.2 23 8-30 39-61 (372)
332 3jvv_A Twitching mobility prot 96.5 0.0015 5E-08 52.1 3.2 22 8-29 125-146 (356)
333 1kht_A Adenylate kinase; phosp 96.5 0.0017 5.7E-08 46.5 3.2 22 7-28 4-25 (192)
334 1nks_A Adenylate kinase; therm 96.5 0.0019 6.6E-08 46.2 3.4 22 7-28 2-23 (194)
335 2plr_A DTMP kinase, probable t 96.5 0.0021 7.1E-08 46.8 3.6 23 6-28 4-26 (213)
336 2x8a_A Nuclear valosin-contain 96.4 0.0017 5.9E-08 49.8 3.1 22 8-29 46-67 (274)
337 1rz3_A Hypothetical protein rb 96.4 0.0026 8.8E-08 46.3 3.9 24 5-28 21-44 (201)
338 1rj9_A FTSY, signal recognitio 96.4 0.0018 6E-08 50.5 3.2 22 7-28 103-124 (304)
339 1e4v_A Adenylate kinase; trans 96.4 0.0019 6.4E-08 47.4 3.2 22 7-28 1-22 (214)
340 3b9q_A Chloroplast SRP recepto 96.4 0.0018 6.2E-08 50.4 3.2 22 7-28 101-122 (302)
341 3tqc_A Pantothenate kinase; bi 96.4 0.0027 9.2E-08 49.8 4.0 24 5-28 91-114 (321)
342 1vht_A Dephospho-COA kinase; s 96.4 0.0024 8.3E-08 46.9 3.6 23 6-28 4-26 (218)
343 2kjq_A DNAA-related protein; s 96.4 0.0012 4.2E-08 45.8 1.9 22 8-29 38-59 (149)
344 2rhm_A Putative kinase; P-loop 96.4 0.0024 8.1E-08 45.8 3.4 23 6-28 5-27 (193)
345 1ukz_A Uridylate kinase; trans 96.4 0.003 1E-07 45.8 4.0 24 5-28 14-37 (203)
346 3d31_A Sulfate/molybdate ABC t 96.4 0.0012 4.1E-08 52.4 2.0 23 8-30 28-50 (348)
347 2gza_A Type IV secretion syste 96.4 0.0018 6.1E-08 51.7 3.0 22 8-29 177-198 (361)
348 3trf_A Shikimate kinase, SK; a 96.4 0.0022 7.6E-08 45.7 3.2 22 7-28 6-27 (185)
349 2qt1_A Nicotinamide riboside k 96.4 0.0029 9.9E-08 46.1 3.9 24 6-29 21-44 (207)
350 1tev_A UMP-CMP kinase; ploop, 96.4 0.0026 8.8E-08 45.6 3.6 23 6-28 3-25 (196)
351 1sq5_A Pantothenate kinase; P- 96.4 0.0019 6.6E-08 50.3 3.1 24 6-29 80-103 (308)
352 1uj2_A Uridine-cytidine kinase 96.4 0.0024 8.1E-08 48.2 3.4 27 2-28 18-44 (252)
353 3tlx_A Adenylate kinase 2; str 96.4 0.0027 9.3E-08 47.7 3.8 24 5-28 28-51 (243)
354 2ewv_A Twitching motility prot 96.4 0.0022 7.4E-08 51.5 3.3 22 8-29 138-159 (372)
355 3gd7_A Fusion complex of cysti 96.3 0.002 6.7E-08 52.0 3.1 22 8-29 49-70 (390)
356 1ixz_A ATP-dependent metallopr 96.3 0.0022 7.6E-08 48.3 3.2 22 8-29 51-72 (254)
357 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0017 5.9E-08 51.1 2.6 23 8-30 173-195 (330)
358 1gvn_B Zeta; postsegregational 96.3 0.0027 9.1E-08 49.0 3.6 24 5-28 32-55 (287)
359 2cdn_A Adenylate kinase; phosp 96.3 0.0029 9.9E-08 45.9 3.6 24 5-28 19-42 (201)
360 2chg_A Replication factor C sm 96.3 0.0055 1.9E-07 44.5 5.2 22 8-29 40-61 (226)
361 4e22_A Cytidylate kinase; P-lo 96.3 0.0029 9.8E-08 47.8 3.7 21 7-27 28-48 (252)
362 2pt5_A Shikimate kinase, SK; a 96.3 0.0026 9E-08 44.5 3.2 21 8-28 2-22 (168)
363 1via_A Shikimate kinase; struc 96.3 0.0023 8E-08 45.3 3.0 21 8-28 6-26 (175)
364 3kta_A Chromosome segregation 96.3 0.0025 8.5E-08 45.4 3.1 21 8-28 28-48 (182)
365 1odf_A YGR205W, hypothetical 3 96.3 0.0035 1.2E-07 48.5 4.0 24 5-28 30-53 (290)
366 1p9r_A General secretion pathw 96.3 0.0024 8E-08 52.0 3.2 22 8-29 169-190 (418)
367 1oxx_K GLCV, glucose, ABC tran 96.2 0.0012 4.1E-08 52.6 1.2 23 8-30 33-55 (353)
368 1aky_A Adenylate kinase; ATP:A 96.2 0.0031 1.1E-07 46.4 3.4 23 6-28 4-26 (220)
369 2xb4_A Adenylate kinase; ATP-b 96.2 0.0031 1.1E-07 46.7 3.4 22 7-28 1-22 (223)
370 2npi_A Protein CLP1; CLP1-PCF1 96.2 0.0024 8.3E-08 52.6 3.0 23 7-29 139-161 (460)
371 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.003 1E-07 46.5 3.2 22 8-29 25-46 (235)
372 1xjc_A MOBB protein homolog; s 96.2 0.0034 1.2E-07 44.5 3.2 22 7-28 5-26 (169)
373 1zd8_A GTP:AMP phosphotransfer 96.2 0.0032 1.1E-07 46.6 3.2 23 6-28 7-29 (227)
374 2og2_A Putative signal recogni 96.2 0.003 1E-07 50.4 3.2 22 7-28 158-179 (359)
375 2oap_1 GSPE-2, type II secreti 96.2 0.0027 9.3E-08 53.0 3.1 23 8-30 262-284 (511)
376 2ze6_A Isopentenyl transferase 96.1 0.0033 1.1E-07 47.6 3.2 21 8-28 3-23 (253)
377 1jbk_A CLPB protein; beta barr 96.1 0.0038 1.3E-07 44.3 3.4 23 7-29 44-66 (195)
378 1uf9_A TT1252 protein; P-loop, 96.1 0.0043 1.5E-07 44.8 3.7 25 5-29 7-31 (203)
379 1in4_A RUVB, holliday junction 96.1 0.0031 1.1E-07 49.7 3.2 23 7-29 52-74 (334)
380 2obl_A ESCN; ATPase, hydrolase 96.1 0.0033 1.1E-07 49.9 3.3 23 8-30 73-95 (347)
381 2vp4_A Deoxynucleoside kinase; 96.1 0.0022 7.4E-08 47.8 2.1 24 6-29 20-43 (230)
382 1zak_A Adenylate kinase; ATP:A 96.1 0.0031 1.1E-07 46.5 2.9 23 6-28 5-27 (222)
383 1iy2_A ATP-dependent metallopr 96.1 0.0046 1.6E-07 47.3 3.9 23 8-30 75-97 (278)
384 4ido_A Atlastin-1; GTPase, GTP 96.1 0.011 3.8E-07 48.4 6.3 62 5-66 66-151 (457)
385 2z0h_A DTMP kinase, thymidylat 96.1 0.0038 1.3E-07 44.9 3.2 22 8-29 2-23 (197)
386 2pbr_A DTMP kinase, thymidylat 96.1 0.0037 1.3E-07 44.7 3.2 21 8-28 2-22 (195)
387 2c95_A Adenylate kinase 1; tra 96.1 0.0037 1.3E-07 44.9 3.0 23 6-28 9-31 (196)
388 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.0042 1.4E-07 43.0 3.2 19 9-27 26-44 (149)
389 2yhs_A FTSY, cell division pro 96.1 0.0036 1.2E-07 51.9 3.2 22 7-28 294-315 (503)
390 2wwf_A Thymidilate kinase, put 96.0 0.0045 1.6E-07 45.0 3.5 23 6-28 10-32 (212)
391 1nij_A Hypothetical protein YJ 96.0 0.0026 8.7E-08 49.9 2.2 25 6-30 4-28 (318)
392 1gtv_A TMK, thymidylate kinase 96.0 0.0015 5E-08 47.8 0.7 21 8-28 2-22 (214)
393 2p5t_B PEZT; postsegregational 96.0 0.0032 1.1E-07 47.6 2.6 25 5-29 31-55 (253)
394 2yvu_A Probable adenylyl-sulfa 96.0 0.0056 1.9E-07 43.7 3.8 23 6-28 13-35 (186)
395 2bwj_A Adenylate kinase 5; pho 96.0 0.0044 1.5E-07 44.6 3.2 23 6-28 12-34 (199)
396 2pez_A Bifunctional 3'-phospho 96.0 0.0045 1.5E-07 43.9 3.2 23 6-28 5-27 (179)
397 3be4_A Adenylate kinase; malar 96.0 0.0044 1.5E-07 45.6 3.2 22 7-28 6-27 (217)
398 1yqt_A RNAse L inhibitor; ATP- 96.0 0.0042 1.4E-07 52.3 3.5 23 8-30 49-71 (538)
399 1cr0_A DNA primase/helicase; R 96.0 0.004 1.4E-07 48.1 3.0 22 8-29 37-58 (296)
400 1e6c_A Shikimate kinase; phosp 96.0 0.0045 1.5E-07 43.5 3.1 22 7-28 3-24 (173)
401 3ozx_A RNAse L inhibitor; ATP 96.0 0.0038 1.3E-07 52.5 3.0 23 8-30 27-49 (538)
402 3umf_A Adenylate kinase; rossm 95.9 0.0048 1.6E-07 45.6 3.2 20 9-28 32-51 (217)
403 3euj_A Chromosome partition pr 95.9 0.0044 1.5E-07 51.3 3.2 21 8-28 31-51 (483)
404 2iyv_A Shikimate kinase, SK; t 95.9 0.0042 1.4E-07 44.2 2.8 22 7-28 3-24 (184)
405 1n0w_A DNA repair protein RAD5 95.9 0.005 1.7E-07 45.8 3.2 22 8-29 26-47 (243)
406 3r20_A Cytidylate kinase; stru 95.9 0.0052 1.8E-07 45.9 3.2 24 5-28 8-31 (233)
407 2cvh_A DNA repair and recombin 95.9 0.0052 1.8E-07 44.9 3.2 21 8-28 22-42 (220)
408 1lv7_A FTSH; alpha/beta domain 95.9 0.0052 1.8E-07 46.3 3.2 24 6-29 45-68 (257)
409 3j16_B RLI1P; ribosome recycli 95.9 0.0048 1.6E-07 52.7 3.2 23 8-30 105-127 (608)
410 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.0058 2E-07 46.3 3.4 22 7-28 5-26 (260)
411 1ak2_A Adenylate kinase isoenz 95.8 0.006 2.1E-07 45.4 3.4 23 6-28 16-38 (233)
412 2dpy_A FLII, flagellum-specifi 95.8 0.0053 1.8E-07 50.3 3.3 23 8-30 159-181 (438)
413 1zuh_A Shikimate kinase; alpha 95.8 0.0063 2.1E-07 42.7 3.3 21 8-28 9-29 (168)
414 2p65_A Hypothetical protein PF 95.8 0.0045 1.5E-07 43.7 2.5 24 6-29 43-66 (187)
415 3uc9_A Increased recombination 95.8 0.0048 1.6E-07 45.8 2.6 24 7-30 30-53 (233)
416 3bos_A Putative DNA replicatio 95.8 0.0064 2.2E-07 44.9 3.4 24 6-29 52-75 (242)
417 3nwj_A ATSK2; P loop, shikimat 95.8 0.0057 1.9E-07 46.2 3.1 22 7-28 49-70 (250)
418 3b60_A Lipid A export ATP-bind 95.7 0.0053 1.8E-07 52.1 3.1 22 8-29 371-392 (582)
419 2w58_A DNAI, primosome compone 95.7 0.0071 2.4E-07 43.7 3.4 23 7-29 55-77 (202)
420 1m7g_A Adenylylsulfate kinase; 95.7 0.0065 2.2E-07 44.4 3.2 23 6-28 25-47 (211)
421 2vli_A Antibiotic resistance p 95.7 0.004 1.4E-07 44.2 1.9 23 6-28 5-27 (183)
422 4eaq_A DTMP kinase, thymidylat 95.7 0.0067 2.3E-07 45.1 3.2 25 5-29 25-49 (229)
423 3b5x_A Lipid A export ATP-bind 95.7 0.006 2.1E-07 51.8 3.2 22 8-29 371-392 (582)
424 3bk7_A ABC transporter ATP-bin 95.7 0.0063 2.2E-07 51.9 3.2 23 8-30 119-141 (607)
425 1svm_A Large T antigen; AAA+ f 95.7 0.0067 2.3E-07 48.7 3.2 22 7-28 170-191 (377)
426 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.0067 2.3E-07 48.5 3.2 19 9-27 26-44 (365)
427 1ltq_A Polynucleotide kinase; 95.6 0.0093 3.2E-07 46.0 3.9 22 7-28 3-24 (301)
428 1yqt_A RNAse L inhibitor; ATP- 95.6 0.0072 2.5E-07 50.8 3.5 23 8-30 314-336 (538)
429 3ozx_A RNAse L inhibitor; ATP 95.6 0.0065 2.2E-07 51.1 3.0 23 8-30 296-318 (538)
430 3bk7_A ABC transporter ATP-bin 95.6 0.0076 2.6E-07 51.4 3.5 23 8-30 384-406 (607)
431 4dzz_A Plasmid partitioning pr 95.5 0.036 1.2E-06 39.9 6.6 84 55-145 76-161 (206)
432 1nlf_A Regulatory protein REPA 95.5 0.0078 2.7E-07 46.0 3.0 21 8-28 32-52 (279)
433 2f6r_A COA synthase, bifunctio 95.5 0.0087 3E-07 46.0 3.3 23 5-27 74-96 (281)
434 1njg_A DNA polymerase III subu 95.5 0.009 3.1E-07 43.9 3.2 21 8-28 47-67 (250)
435 2grj_A Dephospho-COA kinase; T 95.4 0.011 3.7E-07 42.8 3.4 24 6-29 12-35 (192)
436 2yl4_A ATP-binding cassette SU 95.4 0.0054 1.9E-07 52.2 2.0 22 8-29 372-393 (595)
437 3b9p_A CG5977-PA, isoform A; A 95.4 0.009 3.1E-07 45.9 3.1 24 6-29 54-77 (297)
438 3n70_A Transport activator; si 95.4 0.01 3.4E-07 40.7 3.0 25 6-30 24-48 (145)
439 3j16_B RLI1P; ribosome recycli 95.4 0.009 3.1E-07 51.0 3.2 23 9-31 381-403 (608)
440 3qf4_B Uncharacterized ABC tra 95.4 0.0061 2.1E-07 51.9 2.2 22 8-29 383-404 (598)
441 3h4m_A Proteasome-activating n 95.4 0.0096 3.3E-07 45.5 3.1 24 6-29 51-74 (285)
442 3u61_B DNA polymerase accessor 95.4 0.11 3.6E-06 40.4 9.1 21 9-29 51-71 (324)
443 3ake_A Cytidylate kinase; CMP 95.3 0.013 4.5E-07 42.3 3.7 21 8-28 4-24 (208)
444 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.011 3.6E-07 44.5 3.2 24 6-29 39-62 (262)
445 4a82_A Cystic fibrosis transme 95.3 0.0053 1.8E-07 52.1 1.6 22 8-29 369-390 (578)
446 3cf0_A Transitional endoplasmi 95.3 0.01 3.5E-07 45.9 3.1 23 7-29 50-72 (301)
447 3qks_A DNA double-strand break 95.3 0.011 3.9E-07 43.0 3.2 20 8-27 25-44 (203)
448 2px0_A Flagellar biosynthesis 95.3 0.01 3.5E-07 46.0 3.0 85 55-149 183-273 (296)
449 3qf4_A ABC transporter, ATP-bi 95.2 0.007 2.4E-07 51.5 2.1 22 8-29 371-392 (587)
450 1l8q_A Chromosomal replication 95.2 0.011 3.9E-07 46.1 3.1 23 7-29 38-60 (324)
451 3t15_A Ribulose bisphosphate c 95.2 0.012 4.1E-07 45.4 3.2 24 6-29 36-59 (293)
452 1pzn_A RAD51, DNA repair and r 95.2 0.012 4E-07 46.7 3.0 23 8-30 133-155 (349)
453 1tue_A Replication protein E1; 95.1 0.01 3.6E-07 43.3 2.5 21 8-28 60-80 (212)
454 3crm_A TRNA delta(2)-isopenten 95.1 0.016 5.5E-07 45.4 3.7 23 7-29 6-28 (323)
455 1sxj_E Activator 1 40 kDa subu 95.1 0.01 3.6E-07 46.7 2.7 21 8-28 38-58 (354)
456 2qmh_A HPR kinase/phosphorylas 95.1 0.013 4.4E-07 42.6 2.9 24 7-30 35-58 (205)
457 1vma_A Cell division protein F 95.1 0.014 4.7E-07 45.5 3.2 85 56-150 188-284 (306)
458 3ea0_A ATPase, para family; al 95.1 0.19 6.4E-06 37.1 9.4 90 55-152 119-208 (245)
459 2dr3_A UPF0273 protein PH0284; 95.1 0.013 4.5E-07 43.5 3.1 21 8-28 25-45 (247)
460 1a7j_A Phosphoribulokinase; tr 95.1 0.0065 2.2E-07 46.9 1.4 27 1-28 1-27 (290)
461 4f4c_A Multidrug resistance pr 95.1 0.014 4.7E-07 54.3 3.7 21 8-28 1107-1127(1321)
462 2iw3_A Elongation factor 3A; a 95.1 0.015 5.2E-07 52.1 3.8 24 8-31 463-486 (986)
463 2qby_A CDC6 homolog 1, cell di 95.1 0.013 4.5E-07 46.4 3.1 24 6-29 45-68 (386)
464 1q3t_A Cytidylate kinase; nucl 95.0 0.017 5.8E-07 43.0 3.5 24 5-28 15-38 (236)
465 3gmt_A Adenylate kinase; ssgci 95.0 0.016 5.6E-07 43.1 3.4 23 6-28 8-30 (230)
466 3syl_A Protein CBBX; photosynt 95.0 0.015 5.3E-07 44.8 3.3 21 7-27 68-88 (309)
467 3pfi_A Holliday junction ATP-d 95.0 0.052 1.8E-06 42.4 6.4 23 7-29 56-78 (338)
468 3zvl_A Bifunctional polynucleo 95.0 0.013 4.5E-07 47.6 3.0 23 6-28 258-280 (416)
469 2ga8_A Hypothetical 39.9 kDa p 94.9 0.023 7.8E-07 45.1 4.1 23 5-27 23-45 (359)
470 1fnn_A CDC6P, cell division co 94.9 0.015 5.3E-07 46.2 3.2 22 8-29 46-67 (389)
471 1d2n_A N-ethylmaleimide-sensit 94.9 0.022 7.4E-07 43.3 3.9 25 5-29 63-87 (272)
472 1sxj_C Activator 1 40 kDa subu 94.9 0.015 5.2E-07 45.7 3.1 22 8-29 48-69 (340)
473 1ofh_A ATP-dependent HSL prote 94.9 0.017 5.7E-07 44.5 3.2 24 6-29 50-73 (310)
474 3d3q_A TRNA delta(2)-isopenten 94.9 0.022 7.5E-07 45.0 3.8 22 7-28 8-29 (340)
475 4fcw_A Chaperone protein CLPB; 94.9 0.017 5.8E-07 44.6 3.2 23 7-29 48-70 (311)
476 4b4t_K 26S protease regulatory 94.8 0.017 5.8E-07 47.1 3.2 23 7-29 207-229 (428)
477 3exa_A TRNA delta(2)-isopenten 94.8 0.019 6.5E-07 44.8 3.3 23 7-29 4-26 (322)
478 3foz_A TRNA delta(2)-isopenten 94.8 0.023 8E-07 44.2 3.8 23 7-29 11-33 (316)
479 1xwi_A SKD1 protein; VPS4B, AA 94.8 0.017 5.8E-07 45.2 3.1 23 7-29 46-68 (322)
480 3ld9_A DTMP kinase, thymidylat 94.8 0.024 8.1E-07 42.0 3.7 28 1-28 16-43 (223)
481 4b4t_M 26S protease regulatory 94.8 0.018 6E-07 47.1 3.2 24 6-29 215-238 (434)
482 3qkt_A DNA double-strand break 94.8 0.018 6.3E-07 45.3 3.2 19 9-27 26-44 (339)
483 2iw3_A Elongation factor 3A; a 94.8 0.0092 3.2E-07 53.5 1.6 23 8-30 701-723 (986)
484 3a8t_A Adenylate isopentenyltr 94.7 0.02 6.9E-07 45.1 3.3 22 8-29 42-63 (339)
485 4b4t_L 26S protease subunit RP 94.7 0.02 6.7E-07 46.8 3.2 24 6-29 215-238 (437)
486 3eie_A Vacuolar protein sortin 94.7 0.021 7.2E-07 44.6 3.3 23 7-29 52-74 (322)
487 1qhl_A Protein (cell division 94.6 0.0051 1.7E-07 45.8 -0.3 22 9-30 30-51 (227)
488 1tf7_A KAIC; homohexamer, hexa 94.6 0.019 6.5E-07 48.1 3.0 20 9-28 42-63 (525)
489 1c9k_A COBU, adenosylcobinamid 94.6 0.023 8E-07 40.6 3.1 21 9-29 2-22 (180)
490 1sxj_D Activator 1 41 kDa subu 94.6 0.022 7.4E-07 44.8 3.2 22 8-29 60-81 (353)
491 2o5v_A DNA replication and rep 94.5 0.023 7.8E-07 45.3 3.2 21 8-28 28-48 (359)
492 3tqf_A HPR(Ser) kinase; transf 94.5 0.03 1E-06 39.8 3.4 24 7-30 17-40 (181)
493 4b4t_J 26S protease regulatory 94.5 0.023 7.8E-07 45.9 3.2 24 6-29 182-205 (405)
494 1w1w_A Structural maintenance 94.5 0.022 7.6E-07 46.4 3.2 21 8-28 28-48 (430)
495 2v1u_A Cell division control p 94.5 0.02 6.7E-07 45.4 2.8 25 5-29 43-67 (387)
496 3m6a_A ATP-dependent protease 94.5 0.022 7.4E-07 48.0 3.1 22 8-29 110-131 (543)
497 2qgz_A Helicase loader, putati 94.5 0.026 8.9E-07 43.9 3.4 23 6-28 152-174 (308)
498 2r62_A Cell division protease 94.5 0.01 3.6E-07 44.9 1.1 23 7-29 45-67 (268)
499 3uk6_A RUVB-like 2; hexameric 94.4 0.023 7.7E-07 45.0 3.0 22 8-29 72-93 (368)
500 3cr8_A Sulfate adenylyltranfer 94.4 0.015 5E-07 49.1 2.0 24 6-29 369-392 (552)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.7e-42 Score=259.32 Aligned_cols=167 Identities=41% Similarity=0.706 Sum_probs=146.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.||||+|++++..++..+++.+|++|+
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 56899999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
|||++++.+|.++..|+..+......+.|++||+||+|+.+.+.++.+++.+++...++.|+++||++|.||+++|+.|.
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~ 171 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHH
Confidence 99999999999999999999888778899999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 028294 165 AKILQNI 171 (211)
Q Consensus 165 ~~~~~~~ 171 (211)
+.+....
T Consensus 172 ~~i~~~~ 178 (216)
T 4dkx_A 172 AALPGME 178 (216)
T ss_dssp HHC----
T ss_pred HHHHhhh
Confidence 8886543
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.1e-37 Score=232.64 Aligned_cols=177 Identities=48% Similarity=0.875 Sum_probs=160.8
Q ss_pred CC--CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcc
Q 028294 1 MS--YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG 78 (211)
Q Consensus 1 m~--~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ 78 (211)
|+ +++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 54 6788999999999999999999999999988888888988888888899999999999999999999999999999
Q ss_pred ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028294 79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 158 (211)
+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus 81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 160 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVED 160 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHH
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999999999887767899999999999987777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 028294 159 AFIKTAAKILQNIQEGALD 177 (211)
Q Consensus 159 ~~~~i~~~~~~~~~~~~~~ 177 (211)
+|++|.+.+.+........
T Consensus 161 l~~~l~~~i~~~~~~~~~~ 179 (206)
T 2bcg_Y 161 AFLTMARQIKESMSQQNLN 179 (206)
T ss_dssp HHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHhhcccc
Confidence 9999999998876655433
No 3
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-37 Score=233.87 Aligned_cols=178 Identities=49% Similarity=0.841 Sum_probs=148.5
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|.+++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|
T Consensus 8 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (223)
T 3cpj_B 8 YDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAV 87 (223)
T ss_dssp --CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred CCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCC
Confidence 45678899999999999999999999999998888888888888888889998899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
++|+|||++++.++..+..|+..+......+.|++||+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus 88 ~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 167 (223)
T 3cpj_B 88 GALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAF 167 (223)
T ss_dssp EEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887766689999999999998767778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccc
Q 028294 161 IKTAAKILQNIQEGALDA 178 (211)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~ 178 (211)
++|.+.+.++........
T Consensus 168 ~~l~~~i~~~~~~~~~~~ 185 (223)
T 3cpj_B 168 EELINTIYQKVSKHQMDL 185 (223)
T ss_dssp HHHHHHHTTCC-------
T ss_pred HHHHHHHHHHhhhcccCc
Confidence 999999988777665544
No 4
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=7e-35 Score=215.53 Aligned_cols=176 Identities=51% Similarity=0.910 Sum_probs=159.1
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 45789999999999999999999999999888888889999999999999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+......++...++...+++++++||+++.|++++|++
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 172 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 172 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998887778999999999999888888888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccc
Q 028294 163 TAAKILQNIQEGALDA 178 (211)
Q Consensus 163 i~~~~~~~~~~~~~~~ 178 (211)
|.+.+.++........
T Consensus 173 l~~~i~~~~~~~~~~~ 188 (196)
T 3tkl_A 173 MAAEIKKRMGPGATAG 188 (196)
T ss_dssp HHHHHHHHC-------
T ss_pred HHHHHHHHhccccccC
Confidence 9999988776554433
No 5
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=215.67 Aligned_cols=170 Identities=35% Similarity=0.530 Sum_probs=151.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..++..+|++|
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 35789999999999999999999999988877777666654 45678888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+..+++..++...+++++++||++|.|++++|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 170 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD 170 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998877653 58999999999999877778888999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 028294 163 TAAKILQNIQEG 174 (211)
Q Consensus 163 i~~~~~~~~~~~ 174 (211)
|.+.+.++....
T Consensus 171 l~~~i~~~~~~~ 182 (206)
T 2bov_A 171 LMREIRARKMED 182 (206)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHccccc
Confidence 999998765433
No 6
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=6.7e-35 Score=217.52 Aligned_cols=171 Identities=39% Similarity=0.671 Sum_probs=151.1
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
.++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 35789999999999999999999999998888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEeCCCCCCHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQNVE 157 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~ 157 (211)
|+|||++++.++..+..|+..+..... .+.|+++|+||+|+. ......++...++. ..+++++++||++|.|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999888866543 478999999999997 44566777888887 567899999999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 028294 158 EAFIKTAAKILQNIQEG 174 (211)
Q Consensus 158 ~~~~~i~~~~~~~~~~~ 174 (211)
++|++|.+.+.++....
T Consensus 164 ~l~~~l~~~~~~~~~~~ 180 (207)
T 1vg8_A 164 QAFQTIARNALKQETEV 180 (207)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999998877644
No 7
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=3e-34 Score=210.44 Aligned_cols=176 Identities=60% Similarity=0.999 Sum_probs=159.5
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 45789999999999999999999999999888888888888888888999889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 166 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 166 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999888776678999999999999776778888899999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccc
Q 028294 163 TAAKILQNIQEGALDA 178 (211)
Q Consensus 163 i~~~~~~~~~~~~~~~ 178 (211)
|.+.+.++.+.....+
T Consensus 167 l~~~~~~~~~~~~~~~ 182 (186)
T 2bme_A 167 CARKILNKIESGELDP 182 (186)
T ss_dssp HHHHHHHHHHSCC---
T ss_pred HHHHHHHHhhhcCCCc
Confidence 9999998877655443
No 8
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=215.36 Aligned_cols=177 Identities=59% Similarity=0.987 Sum_probs=150.2
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|++++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 46788999999999999999999999999888888888888888888889998899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||++|.|++++|
T Consensus 100 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 179 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179 (200)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999887766789999999999997767778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccc
Q 028294 161 IKTAAKILQNIQEGALD 177 (211)
Q Consensus 161 ~~i~~~~~~~~~~~~~~ 177 (211)
++|.+.+.++.......
T Consensus 180 ~~l~~~i~~~~~~~~~~ 196 (200)
T 2o52_A 180 LKCARTILNKIDSGELD 196 (200)
T ss_dssp HHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 99999999887765543
No 9
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=5.7e-35 Score=213.87 Aligned_cols=173 Identities=47% Similarity=0.929 Sum_probs=129.4
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
++++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 46788999999999999999999999888877777888888888888889999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 163 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF 163 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998887666899999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 028294 162 KTAAKILQNIQEG 174 (211)
Q Consensus 162 ~i~~~~~~~~~~~ 174 (211)
+|.+.+.++..+.
T Consensus 164 ~l~~~i~~~~~~~ 176 (183)
T 2fu5_C 164 TLARDIKAKMDKN 176 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc
Confidence 9999998876643
No 10
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=6.4e-34 Score=211.73 Aligned_cols=174 Identities=41% Similarity=0.781 Sum_probs=160.4
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|.+++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 46788999999999999999999999999988888888888888888888999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999999999887766689999999999998777788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 028294 161 IKTAAKILQNIQEG 174 (211)
Q Consensus 161 ~~i~~~~~~~~~~~ 174 (211)
++|.+.+.++.+..
T Consensus 163 ~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 163 ERLVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998877654
No 11
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.2e-34 Score=213.50 Aligned_cols=171 Identities=47% Similarity=0.849 Sum_probs=157.7
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.+++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 46788999999999999999999999999888888888999988888999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 181 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL 181 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998887767899999999999987677788888899988999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 028294 162 KTAAKILQNIQ 172 (211)
Q Consensus 162 ~i~~~~~~~~~ 172 (211)
+|.+.+.++..
T Consensus 182 ~l~~~i~~~~~ 192 (201)
T 2ew1_A 182 DLACRLISEAR 192 (201)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 12
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.3e-34 Score=214.19 Aligned_cols=171 Identities=44% Similarity=0.818 Sum_probs=148.2
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
++++.++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (201)
T 2hup_A 25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG 104 (201)
T ss_dssp -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence 56788999999999999999999999999888777888888888888889988999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVEEAF 160 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~ 160 (211)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++ +++++||+++.|++++|
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 184 (201)
T 2hup_A 105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 184 (201)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998887667899999999999987677888899999999999 89999999999999999
Q ss_pred HHHHHHHHHHHh
Q 028294 161 IKTAAKILQNIQ 172 (211)
Q Consensus 161 ~~i~~~~~~~~~ 172 (211)
++|.+.+.++..
T Consensus 185 ~~l~~~i~~~~~ 196 (201)
T 2hup_A 185 LRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhcc
Confidence 999999877654
No 13
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=4.8e-34 Score=210.64 Aligned_cols=171 Identities=81% Similarity=1.255 Sum_probs=153.5
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 46789999999999999999999999998888888888888888888999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 177 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFIN 177 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988876678999999999999876777888899999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 028294 163 TAAKILQNIQE 173 (211)
Q Consensus 163 i~~~~~~~~~~ 173 (211)
|.+.+.++...
T Consensus 178 l~~~i~~~~~~ 188 (191)
T 2a5j_A 178 TAKEIYRKIQQ 188 (191)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999887654
No 14
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=7.5e-34 Score=209.19 Aligned_cols=171 Identities=41% Similarity=0.782 Sum_probs=156.8
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
..++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 45688999999999999999999999999888888888888888888889999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE 177 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999998887666899999999999987777788889999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 028294 162 KTAAKILQNIQ 172 (211)
Q Consensus 162 ~i~~~~~~~~~ 172 (211)
+|.+.+.++.+
T Consensus 178 ~l~~~i~~~~~ 188 (189)
T 2gf9_A 178 RLVDVICEKMN 188 (189)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999887653
No 15
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.9e-34 Score=209.38 Aligned_cols=172 Identities=47% Similarity=0.811 Sum_probs=157.8
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
+++++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||.+.+..++..++..+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 35678899999999999999999999999988888888888888888889999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+...+.+..+++..++...+++++++||+++.|++++|
T Consensus 100 ~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 179 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 179 (193)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999998887666789999999999998766778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 028294 161 IKTAAKILQNIQ 172 (211)
Q Consensus 161 ~~i~~~~~~~~~ 172 (211)
++|.+.+.++..
T Consensus 180 ~~l~~~i~~~~~ 191 (193)
T 2oil_A 180 ETVLKEIFAKVS 191 (193)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
No 16
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=6.3e-34 Score=207.17 Aligned_cols=168 Identities=68% Similarity=1.111 Sum_probs=154.4
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.+++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 90 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCE
Confidence 45688999999999999999999999999888888888888888888899999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++.+++...+++++++||+++.|++++|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998887767899999999999987777788889999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028294 162 KTAAKILQ 169 (211)
Q Consensus 162 ~i~~~~~~ 169 (211)
+|.+.+.+
T Consensus 171 ~l~~~i~~ 178 (179)
T 1z0f_A 171 EAAKKIYQ 178 (179)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99988754
No 17
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=205.57 Aligned_cols=173 Identities=46% Similarity=0.775 Sum_probs=155.7
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
++++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 46788999999999999999999999999888888888999998889999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+......++...++...+++++++||++|.|++++|+
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999999887755 4799999999999988777888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 028294 162 KTAAKILQNIQEGA 175 (211)
Q Consensus 162 ~i~~~~~~~~~~~~ 175 (211)
+|.+.+.+...+..
T Consensus 164 ~l~~~~~~~~~~~~ 177 (181)
T 3tw8_B 164 CITELVLRAKKDNL 177 (181)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhhhh
Confidence 99999988776543
No 18
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.8e-33 Score=204.34 Aligned_cols=167 Identities=40% Similarity=0.759 Sum_probs=152.8
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|++|+|||||+++|++..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 46799999999999999999999999988888888888888888889999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||+++.|++++|++|
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 169 (181)
T 2efe_B 90 IVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI 169 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999988776789999999999998777788889999999999999999999999999999999
Q ss_pred HHHHHHH
Q 028294 164 AAKILQN 170 (211)
Q Consensus 164 ~~~~~~~ 170 (211)
.+.+...
T Consensus 170 ~~~~~~~ 176 (181)
T 2efe_B 170 ARRLPRV 176 (181)
T ss_dssp HHTCC--
T ss_pred HHHHHhc
Confidence 8877544
No 19
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=6.7e-34 Score=205.49 Aligned_cols=167 Identities=35% Similarity=0.706 Sum_probs=145.4
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.+++.++|+|+|++|+|||||+++|++..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 46788999999999999999999999999888888888888888888888889999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|||++++.++..+..|+..+......+.|+++++||+|+.+.+.+..++...++...+++++++||+++.|++++|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999999999888776656899999999999987777888889999999999999999999999999999
Q ss_pred HHHHHHH
Q 028294 162 KTAAKIL 168 (211)
Q Consensus 162 ~i~~~~~ 168 (211)
+|.+.+.
T Consensus 162 ~l~~~~~ 168 (170)
T 1z08_A 162 DLCKRMI 168 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
No 20
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.6e-33 Score=205.84 Aligned_cols=170 Identities=32% Similarity=0.455 Sum_probs=152.3
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|+....++|+++|++|+|||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 79 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDIN 79 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCS
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCC
Confidence 7888899999999999999999999999988888888878777 666788999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 159 (211)
++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++
T Consensus 80 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 159 (181)
T 3t5g_A 80 GYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDV 159 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHH
Confidence 99999999999999999999988866543 58999999999999888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028294 160 FIKTAAKILQNI 171 (211)
Q Consensus 160 ~~~i~~~~~~~~ 171 (211)
|+.|.+.+....
T Consensus 160 ~~~l~~~~~~~~ 171 (181)
T 3t5g_A 160 FRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999886554
No 21
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=5e-33 Score=200.81 Aligned_cols=166 Identities=40% Similarity=0.739 Sum_probs=153.5
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
++++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++....+.+||+||.+.+...+..+++.+|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~ 81 (170)
T 1z0j_A 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAA 81 (170)
T ss_dssp CSEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCE
Confidence 46788999999999999999999999999888888888999888888899999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|||++++.++..+..|+..+.....+..|+++|+||+|+.+......++...++...+++++++||+++.|++++|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 82 AIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFI 161 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 99999999999999999999999887667899999999999987777788889999999999999999999999999999
Q ss_pred HHHHHH
Q 028294 162 KTAAKI 167 (211)
Q Consensus 162 ~i~~~~ 167 (211)
+|.+.+
T Consensus 162 ~i~~~i 167 (170)
T 1z0j_A 162 EISRRI 167 (170)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998765
No 22
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.6e-35 Score=214.39 Aligned_cols=171 Identities=41% Similarity=0.789 Sum_probs=157.6
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
++++.+||+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 46788999999999999999999999999888888888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+....++...++...+++++++||++|.|++++|+
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887767899999999999987778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 028294 162 KTAAKILQNIQ 172 (211)
Q Consensus 162 ~i~~~~~~~~~ 172 (211)
+|.+.+.++..
T Consensus 179 ~l~~~i~~~~~ 189 (191)
T 3dz8_A 179 RLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcc
Confidence 99999987654
No 23
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.4e-33 Score=203.65 Aligned_cols=167 Identities=49% Similarity=0.898 Sum_probs=145.3
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 1 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 46799999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+|||++++.++..+..|+..+......+.|+++++||+|+ ..+....++...++...+++++++||+++.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999988877678999999999999 445567788889999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028294 164 AAKILQNI 171 (211)
Q Consensus 164 ~~~~~~~~ 171 (211)
.+.+.++.
T Consensus 160 ~~~~~~~~ 167 (170)
T 1g16_A 160 AKLIQEKI 167 (170)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99887653
No 24
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=6.1e-33 Score=206.04 Aligned_cols=169 Identities=36% Similarity=0.647 Sum_probs=151.9
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEE--------------------------
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRP-------------------------- 54 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 54 (211)
|+.++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..
T Consensus 2 m~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (208)
T 3clv_A 2 MEKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITN 81 (208)
T ss_dssp CCCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC----------------------------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccc
Confidence 888999999999999999999999999999888888888888888777777655
Q ss_pred -----------EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Q 028294 55 -----------IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123 (211)
Q Consensus 55 -----------~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 123 (211)
..+.+||+||++.+...+..+++.+|++|+|||++++.++..+..|+..+.... +.|+++|+||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D- 158 (208)
T 3clv_A 82 QHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID- 158 (208)
T ss_dssp ---CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-
T ss_pred ccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-
Confidence 889999999999999999999999999999999999999999999998887765 499999999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028294 124 AHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 172 (211)
........+++..++...+++++++||+++.|++++|++|.+.+.++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 207 (208)
T 3clv_A 159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207 (208)
T ss_dssp CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 5556677889999999999999999999999999999999999887654
No 25
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=4.1e-33 Score=201.11 Aligned_cols=164 Identities=43% Similarity=0.796 Sum_probs=151.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999999999988888888888888888889999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
+|||++++.++..+..|+..+.....++.|+++++||+|+.+......++...++...+++++++||++|.|++++|++|
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i 163 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI 163 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999888766789999999999997766777888899999999999999999999999999999
Q ss_pred HHHH
Q 028294 164 AAKI 167 (211)
Q Consensus 164 ~~~~ 167 (211)
.+.+
T Consensus 164 ~~~~ 167 (170)
T 1r2q_A 164 AKKL 167 (170)
T ss_dssp HHTS
T ss_pred HHHH
Confidence 8765
No 26
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.5e-33 Score=208.13 Aligned_cols=169 Identities=37% Similarity=0.656 Sum_probs=152.7
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.+++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 35678999999999999999999999999888888888998888888888888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|+
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ 178 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 99999999999999999999999887767899999999999977667788899999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 028294 162 KTAAKILQN 170 (211)
Q Consensus 162 ~i~~~~~~~ 170 (211)
+|.+.+.+.
T Consensus 179 ~l~~~i~~~ 187 (192)
T 2fg5_A 179 GISRQIPPL 187 (192)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhh
Confidence 998876443
No 27
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=8.3e-34 Score=213.28 Aligned_cols=175 Identities=37% Similarity=0.727 Sum_probs=154.0
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE----------EEEEEEEeCCCccchhh
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR----------PIKLQIWDTAGQESFRS 70 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~l~D~~G~~~~~~ 70 (211)
+++++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++. .+.+.||||||++.+..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 46788999999999999999999999998887777777777777777777766 78899999999999999
Q ss_pred chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Q 028294 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (211)
.+..++..+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++|
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 179 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETS 179 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEB
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEE
Confidence 999999999999999999999999999999887765443 5899999999999987777788889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhcc
Q 028294 150 ARTAQNVEEAFIKTAAKILQNIQEGA 175 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~~~~~~~~~~~~ 175 (211)
|+++.|++++|++|.+.+.++.+...
T Consensus 180 a~~g~gi~~l~~~l~~~i~~~~~~~~ 205 (217)
T 2f7s_A 180 AATGQNVEKAVETLLDLIMKRMEQCV 205 (217)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999988766533
No 28
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=207.73 Aligned_cols=169 Identities=45% Similarity=0.798 Sum_probs=146.9
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
+.++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG 101 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence 35678999999999999999999999998888888888888888888899999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEeCCCCCCHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~ 160 (211)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..+++..++... +.+++++||++|.|++++|
T Consensus 102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~ 181 (192)
T 2il1_A 102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181 (192)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999998888877678999999999999877777888888888874 7899999999999999999
Q ss_pred HHHHHHHHHH
Q 028294 161 IKTAAKILQN 170 (211)
Q Consensus 161 ~~i~~~~~~~ 170 (211)
++|.+.+.++
T Consensus 182 ~~l~~~i~~~ 191 (192)
T 2il1_A 182 LKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 29
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.6e-33 Score=202.56 Aligned_cols=169 Identities=45% Similarity=0.844 Sum_probs=145.1
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
.++..++|+++|++|+|||||+++|++..+. ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++..+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 4678899999999999999999999998885 456677788888877888999999999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 165 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999888766789999999999998777778888899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 028294 161 IKTAAKILQN 170 (211)
Q Consensus 161 ~~i~~~~~~~ 170 (211)
++|.+.+.++
T Consensus 166 ~~l~~~~~~~ 175 (180)
T 2g6b_A 166 TAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 9999888543
No 30
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=4.2e-34 Score=214.20 Aligned_cols=173 Identities=32% Similarity=0.605 Sum_probs=145.2
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|+....++|+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus 4 m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 82 (212)
T 2j0v_A 4 MSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGAD 82 (212)
T ss_dssp CSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE-EEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCS
T ss_pred CCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCC
Confidence 77778899999999999999999999999888777777776553 44667888899999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCCC--------CCHHHHHHHHHHcCC-cEEEEeC
Q 028294 81 GALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRA--------VSKEEGEQFAKENGL-LFLEASA 150 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~s~ 150 (211)
++|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+... +..+++..++...+. +++++||
T Consensus 83 ~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (212)
T 2j0v_A 83 IFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS 161 (212)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence 999999999999999986 7888887665 3899999999999965432 367788888888886 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhcc
Q 028294 151 RTAQNVEEAFIKTAAKILQNIQEGA 175 (211)
Q Consensus 151 ~~~~~i~~~~~~i~~~~~~~~~~~~ 175 (211)
++|.|++++|++|.+.+.+......
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~~~~~ 186 (212)
T 2j0v_A 162 KTQQNVKAVFDTAIKVVLQPPRRKE 186 (212)
T ss_dssp TTCTTHHHHHHHHHHHHHCC-----
T ss_pred CCCCCHHHHHHHHHHHHhhhhhhcc
Confidence 9999999999999999876554433
No 31
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=3.1e-33 Score=201.53 Aligned_cols=166 Identities=37% Similarity=0.610 Sum_probs=150.9
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+++.++|+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 46789999999999999999999999998888888888888888888899899999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 99999999999999999998887665 58999999999999876677788889999999999999999999999999999
Q ss_pred HHHHHHH
Q 028294 163 TAAKILQ 169 (211)
Q Consensus 163 i~~~~~~ 169 (211)
|.+.+.+
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988753
No 32
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=8.2e-33 Score=203.78 Aligned_cols=171 Identities=39% Similarity=0.726 Sum_probs=153.5
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEE-EEEEEECCE---------EEEEEEEeCCCccchhhch
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG-ARMVTIDGR---------PIKLQIWDTAGQESFRSIT 72 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~l~l~D~~G~~~~~~~~ 72 (211)
+++.++|+|+|++|+|||||+++|++..+...+.++.+.++. ...+.+++. .+.+.+||+||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 567899999999999999999999999988888888888877 556666665 7889999999999999999
Q ss_pred HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC
Q 028294 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR 151 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 151 (211)
..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 167 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA 167 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence 9999999999999999999999999999998877664 689999999999998766778888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhh
Q 028294 152 TAQNVEEAFIKTAAKILQNIQE 173 (211)
Q Consensus 152 ~~~~i~~~~~~i~~~~~~~~~~ 173 (211)
++.|++++|++|.+.+.++...
T Consensus 168 ~~~~v~~l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 168 NGTNISHAIEMLLDLIMKRMER 189 (195)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999877654
No 33
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.4e-32 Score=201.16 Aligned_cols=165 Identities=33% Similarity=0.540 Sum_probs=150.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|++|
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 3679999999999999999999999988888888877777 666788999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC-CCCCHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR-TAQNVEEAFI 161 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~i~~~~~ 161 (211)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||+ ++.|++++|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~ 174 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH 174 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHH
Confidence 9999999999999999998886643 4689999999999998878888899999999999999999999 9999999999
Q ss_pred HHHHHHHH
Q 028294 162 KTAAKILQ 169 (211)
Q Consensus 162 ~i~~~~~~ 169 (211)
.|.+.+.+
T Consensus 175 ~l~~~i~~ 182 (183)
T 3kkq_A 175 DLVRVIRQ 182 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99998865
No 34
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=2.2e-32 Score=200.75 Aligned_cols=169 Identities=33% Similarity=0.576 Sum_probs=146.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|++|+|||||+++|.+..+...+.++.+ +.....+.+++..+.+.+||+||++.+...+..++..+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 3578999999999999999999999998777777754 444455778999999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....++...++...+++++++||++|.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 159 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT 159 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999988877543 6899999999999974 456778889999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 028294 163 TAAKILQNIQEG 174 (211)
Q Consensus 163 i~~~~~~~~~~~ 174 (211)
|.+.+.+.....
T Consensus 160 l~~~~~~~~~~~ 171 (189)
T 4dsu_A 160 LVREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhc
Confidence 999998776654
No 35
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=9.3e-33 Score=199.24 Aligned_cols=163 Identities=42% Similarity=0.761 Sum_probs=149.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 46899999999999999999999999888888888888888888899999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC---CCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR---RAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
|||++++.++..+..|+..+......+.|+++++||+|+... ..+..++...++...+++++++||+++.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL 161 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999988877678999999999999654 56777888889988999999999999999999999
Q ss_pred HHHHHH
Q 028294 162 KTAAKI 167 (211)
Q Consensus 162 ~i~~~~ 167 (211)
+|.+.+
T Consensus 162 ~l~~~i 167 (170)
T 1ek0_A 162 GIGEKI 167 (170)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 988654
No 36
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-32 Score=205.75 Aligned_cols=172 Identities=47% Similarity=0.885 Sum_probs=153.7
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
++..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 45679999999999999999999999998888888888888888888999889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|+|||++++.++..+..|+..+......+.|+++|+||+|+ .......++...++...+++++++||+++.|++++|++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 175 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 175 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999888876668999999999999 44556778888898889999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q 028294 163 TAAKILQNIQEGA 175 (211)
Q Consensus 163 i~~~~~~~~~~~~ 175 (211)
|.+.+.++.....
T Consensus 176 l~~~~~~~~~~~~ 188 (213)
T 3cph_A 176 LAKLIQEKIDSNK 188 (213)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhhh
Confidence 9999988765433
No 37
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=207.95 Aligned_cols=167 Identities=38% Similarity=0.683 Sum_probs=139.0
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.|||+||++.+..++..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 45678999999999999999999999999887778888888888888899999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC------CCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA------HRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+. ..+.+..+++..++...+++++++||+++.|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g 183 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN 183 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence 9999999999999999999998887766689999999999995 3456777888899999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKIL 168 (211)
Q Consensus 156 i~~~~~~i~~~~~ 168 (211)
++++|++|.+.+.
T Consensus 184 v~el~~~l~~~i~ 196 (199)
T 2p5s_A 184 IVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998774
No 38
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=2.2e-32 Score=199.29 Aligned_cols=168 Identities=33% Similarity=0.570 Sum_probs=150.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|++|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..++..+|++|
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 46799999999999999999999999888888888777766 55778888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 165 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ 165 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 999999999999999999888443 3468999999999999877778888899999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 028294 163 TAAKILQNIQ 172 (211)
Q Consensus 163 i~~~~~~~~~ 172 (211)
|.+.+.+..+
T Consensus 166 l~~~~~~~~~ 175 (181)
T 2fn4_A 166 LVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhhc
Confidence 9999876554
No 39
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=208.13 Aligned_cols=171 Identities=30% Similarity=0.469 Sum_probs=145.3
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|+....++|+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 97 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH 97 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence 6667889999999999999999999999999888888877776 555667778889999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 159 (211)
++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+..++...++...+++++++||+++.|++++
T Consensus 98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 177 (201)
T 3oes_A 98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI 177 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999998876543 57899999999999877788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028294 160 FIKTAAKILQNIQ 172 (211)
Q Consensus 160 ~~~i~~~~~~~~~ 172 (211)
|++|.+.+.+...
T Consensus 178 ~~~l~~~i~~~~~ 190 (201)
T 3oes_A 178 FTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHhhhh
Confidence 9999999876544
No 40
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=1.1e-32 Score=200.56 Aligned_cols=164 Identities=41% Similarity=0.734 Sum_probs=150.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|++|+
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 56899999999999999999999999888888888888888888899999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
|||++++.++..+..|+..+......+.|+++|+||+|+.+.+....++...++...+++++++||+++.|++++|++|.
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 172 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999988777666899999999999987777788888899999999999999999999999999998
Q ss_pred HHHH
Q 028294 165 AKIL 168 (211)
Q Consensus 165 ~~~~ 168 (211)
+.+.
T Consensus 173 ~~~~ 176 (179)
T 2y8e_A 173 AALP 176 (179)
T ss_dssp HTCC
T ss_pred HHHh
Confidence 7653
No 41
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4e-33 Score=206.55 Aligned_cols=164 Identities=29% Similarity=0.441 Sum_probs=142.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|++|+|||||+++|.+..+...+.++.+.++. ..+.+++..+.+.+|||||++.+..++..++..+|++|
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 46799999999999999999999999887777777665554 44667888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .....++...++...+++++++||+++.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ 163 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence 99999999999999888887766543 4789999999999975 45667888888888999999999999999999999
Q ss_pred HHHHHHHH
Q 028294 162 KTAAKILQ 169 (211)
Q Consensus 162 ~i~~~~~~ 169 (211)
+|.+.+.+
T Consensus 164 ~l~~~~~~ 171 (199)
T 2gf0_A 164 ELLTLETR 171 (199)
T ss_dssp HHHHHCSS
T ss_pred HHHHHHhh
Confidence 99887643
No 42
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=198.82 Aligned_cols=168 Identities=32% Similarity=0.444 Sum_probs=137.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc--hhhchHHHhccccE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--FRSITRSYYRGAAG 81 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--~~~~~~~~~~~~d~ 81 (211)
++.++|+|+|++|+|||||+++|.+..+...+. +.+.++....+.+++..+.+.+||+||++. +..+...+++.+|+
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 467999999999999999999999888765544 456677777788899999999999999987 56677788899999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
+|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999988887653 3579999999999998777788888888888899999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 028294 161 IKTAAKILQNIQ 172 (211)
Q Consensus 161 ~~i~~~~~~~~~ 172 (211)
++|.+.+..+..
T Consensus 161 ~~l~~~~~~~~~ 172 (175)
T 2nzj_A 161 EGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhhc
Confidence 999998876544
No 43
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=2.8e-32 Score=198.69 Aligned_cols=167 Identities=19% Similarity=0.305 Sum_probs=142.4
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|.....+||+++|++|||||||+++|.+..+.+ +.++.+..+ ...+.+++..+.+.+|||||++. ..+++.+|
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d 74 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD 74 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence 777789999999999999999999999998876 566666554 55677899999999999999886 46788899
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEecCCCC--CCCCCCHHHHHHHHHHc-CCcEEEEeCCCCC
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLA--HRRAVSKEEGEQFAKEN-GLLFLEASARTAQ 154 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~ 154 (211)
++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+. ..+.+..+++..++... +++++++||++|.
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 154 (178)
T 2iwr_A 75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL 154 (178)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence 99999999999999999998766655433 579999999999994 44567788888888876 6899999999999
Q ss_pred CHHHHHHHHHHHHHHHHhhc
Q 028294 155 NVEEAFIKTAAKILQNIQEG 174 (211)
Q Consensus 155 ~i~~~~~~i~~~~~~~~~~~ 174 (211)
|++++|++|.+.+.+..+..
T Consensus 155 ~i~~lf~~l~~~~~~~~~~~ 174 (178)
T 2iwr_A 155 NVDRVFQEVAQKVVTLRKQQ 174 (178)
T ss_dssp THHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhh
Confidence 99999999999998876643
No 44
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=2.9e-32 Score=198.22 Aligned_cols=166 Identities=37% Similarity=0.678 Sum_probs=146.3
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
.+..++|+++|++|+|||||+++|++..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45789999999999999999999999998888888888888888888999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCCCCCCCHHHHHHHHH-HcCCcEEEEeCCCCCCHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-ENGLLFLEASARTAQNVE 157 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~ 157 (211)
|+|||++++.++..+..|+..+..... .+.|+++|+||+|+. ......+++..++. ..+++++++||+++.|++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 162 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999999988876553 578999999999997 45567788888888 567899999999999999
Q ss_pred HHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQ 169 (211)
Q Consensus 158 ~~~~~i~~~~~~ 169 (211)
++|++|.+.+.+
T Consensus 163 ~l~~~l~~~~~~ 174 (177)
T 1wms_A 163 AAFEEAVRRVLA 174 (177)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 45
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-32 Score=200.38 Aligned_cols=166 Identities=49% Similarity=0.848 Sum_probs=150.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.||||||++.+..++..+++.+|++|+
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 56899999999999999999999999888888888899988888999999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ..+..+++..++...+++++++||+++.|++++|++|
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 172 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL 172 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999999888876543 5799999999999953 4567788889999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028294 164 AAKILQNI 171 (211)
Q Consensus 164 ~~~~~~~~ 171 (211)
.+.+.+..
T Consensus 173 ~~~~~~~~ 180 (195)
T 1x3s_A 173 VEKIIQTP 180 (195)
T ss_dssp HHHHHTSG
T ss_pred HHHHHhhh
Confidence 99887543
No 46
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=8e-33 Score=204.95 Aligned_cols=168 Identities=27% Similarity=0.386 Sum_probs=143.2
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh-chHHHhccccE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-ITRSYYRGAAG 81 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~ 81 (211)
.++.++|+|+|++|||||||+++|.+........++.+.+.....+.+++..+.+.+||++|++.+.. ++..++..+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 45789999999999999999999976544333344455566666678899999999999999988765 77888999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 160 (211)
+|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++.|++++|
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf 179 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF 179 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHH
Confidence 9999999999999999999998877553 589999999999998777788889999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 028294 161 IKTAAKILQN 170 (211)
Q Consensus 161 ~~i~~~~~~~ 170 (211)
+.|.+.+.++
T Consensus 180 ~~l~~~i~~~ 189 (195)
T 3cbq_A 180 EGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 9999888543
No 47
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.9e-32 Score=201.69 Aligned_cols=166 Identities=42% Similarity=0.779 Sum_probs=147.7
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh-hchHHHhccccE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR-SITRSYYRGAAG 81 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-~~~~~~~~~~d~ 81 (211)
....++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+. ..+..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 3467999999999999999999999999888888888888888888899989999999999999988 889999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCC---CCHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA---QNVE 157 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~i~ 157 (211)
+|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...++...+++++++||+++ .+++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~ 176 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE 176 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence 999999999999999999999887765 468999999999999877777888899999999999999999999 9999
Q ss_pred HHHHHHHHHHH
Q 028294 158 EAFIKTAAKIL 168 (211)
Q Consensus 158 ~~~~~i~~~~~ 168 (211)
++|++|.+.+.
T Consensus 177 ~l~~~l~~~i~ 187 (189)
T 1z06_A 177 AIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHHHh
Confidence 99999987764
No 48
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=202.37 Aligned_cols=164 Identities=32% Similarity=0.482 Sum_probs=142.4
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
....+||+|+|++|||||||+++|++..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..+ ..++..+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 457799999999999999999999999988888888777763 45678999999999999999988775 6789999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeC-CCCCCHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA-RTAQNVEE 158 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~i~~ 158 (211)
|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++.+++...+++++++|| +++.|+++
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~ 175 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQH 175 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHH
Confidence 999999999999999999988876632 58999999999999877778889999999999999999999 89999999
Q ss_pred HHHHHHHHHH
Q 028294 159 AFIKTAAKIL 168 (211)
Q Consensus 159 ~~~~i~~~~~ 168 (211)
+|+.|.+.+.
T Consensus 176 lf~~l~~~i~ 185 (187)
T 3c5c_A 176 VFHEAVREAR 185 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998774
No 49
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=2.3e-32 Score=197.37 Aligned_cols=165 Identities=27% Similarity=0.404 Sum_probs=134.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh-chHHHhccccEEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-ITRSYYRGAAGALL 84 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-~~~~~~~~~d~~i~ 84 (211)
.+||+++|++|+|||||+++|.+........++.+.+.....+.+++..+.+.+||+||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998777766666667777778888999999999999999998876 77778899999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 161 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence 9999999999999999998877654 489999999999998777888899999999999999999999999999999999
Q ss_pred HHHHHHH
Q 028294 164 AAKILQN 170 (211)
Q Consensus 164 ~~~~~~~ 170 (211)
.+.+..+
T Consensus 162 ~~~i~~~ 168 (169)
T 3q85_A 162 VRQIRLR 168 (169)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9887653
No 50
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=4e-32 Score=200.73 Aligned_cols=167 Identities=28% Similarity=0.523 Sum_probs=147.2
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.....++|+++|++|+|||||+++|++..+...+.++.+..+.. .+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 97 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV 97 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence 44578999999999999999999999999888888887777764 47789999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCCC--CCCCHHHHHHHHHHcCCc-EEEEeCCCCCCHH
Q 028294 82 ALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR--RAVSKEEGEQFAKENGLL-FLEASARTAQNVE 157 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~ 157 (211)
+|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. .....+++..++...++. ++++||++|.|++
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence 9999999999999997 66777776554 47999999999999753 567788999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQN 170 (211)
Q Consensus 158 ~~~~~i~~~~~~~ 170 (211)
++|++|.+.+.++
T Consensus 177 ~l~~~l~~~i~~~ 189 (194)
T 3reg_A 177 EVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 51
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.1e-32 Score=200.52 Aligned_cols=169 Identities=37% Similarity=0.508 Sum_probs=147.5
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|.....++|+|+|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++. ...+..++..+|
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d 100 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGE 100 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCS
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCC
Confidence 5556789999999999999999999999998888888877665 44467888899999999999988 778889999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCC-CHHH
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ-NVEE 158 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~i~~ 158 (211)
++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..++...+++++++||+++. |+++
T Consensus 101 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~ 180 (196)
T 2atv_A 101 GFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITE 180 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHH
Confidence 99999999999999999999888877543 589999999999998777788888999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHH
Q 028294 159 AFIKTAAKILQNI 171 (211)
Q Consensus 159 ~~~~i~~~~~~~~ 171 (211)
+|++|.+.+.++.
T Consensus 181 l~~~l~~~i~~~~ 193 (196)
T 2atv_A 181 IFYELCREVRRRR 193 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc
Confidence 9999999987654
No 52
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=6.8e-33 Score=201.75 Aligned_cols=167 Identities=36% Similarity=0.548 Sum_probs=146.2
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC-EEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-RPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.+..++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 45789999999999999999999999888766667777777777788876 67899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCe-EEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHAN--PNMS-IMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p-~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 158 (211)
+|+|||++++.++..+..|+..+..... .+.| +++|+||+|+.+.+.+..++...++...+++++++||+++.|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999888866432 2444 899999999987677788889999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 028294 159 AFIKTAAKILQ 169 (211)
Q Consensus 159 ~~~~i~~~~~~ 169 (211)
+|++|.+.+.+
T Consensus 163 l~~~l~~~~~~ 173 (178)
T 2hxs_A 163 CFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988743
No 53
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.4e-32 Score=200.50 Aligned_cols=170 Identities=35% Similarity=0.645 Sum_probs=135.2
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
..+..++|+|+|++|+|||||+++|++..+...+.++.+.++....+.++ +..+.+.+||+||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 45678999999999999999999999999888888887888877777776 56678999999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEecCCCCC-CCCCCHHHHHHHHH-HcCCcEEEEeCCCCC
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHAN----PNMSIMLVGNKCDLAH-RRAVSKEEGEQFAK-ENGLLFLEASARTAQ 154 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ 154 (211)
++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ......+++..++. ..+.+++++||+++.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 99999999999999999999988876543 5899999999999953 34567788888887 467889999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 028294 155 NVEEAFIKTAAKILQNI 171 (211)
Q Consensus 155 ~i~~~~~~i~~~~~~~~ 171 (211)
|++++|++|.+.+.++.
T Consensus 164 gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQN 180 (182)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999987764
No 54
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.2e-31 Score=196.76 Aligned_cols=164 Identities=18% Similarity=0.330 Sum_probs=142.4
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.....+||+|+|++|||||||+++|++..+...+.++ +..+ ...+.+++..+.+.+|||+|++.+. +++.+|+
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 3457899999999999999999999999988777766 4444 3668889999999999999998776 7788999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCC--CCCCCCHHHHHHHHHHcC-CcEEEEeCCCCCCHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLA--HRRAVSKEEGEQFAKENG-LLFLEASARTAQNVE 157 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~ 157 (211)
+|+|||++++.++..+..|+..+..... .+.|+++++||+|+. ....+..+++..++...+ ++++++||+++.|++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~ 168 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE 168 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence 9999999999999999999999877653 579999999999994 456678889999999987 899999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 028294 158 EAFIKTAAKILQNIQ 172 (211)
Q Consensus 158 ~~~~~i~~~~~~~~~ 172 (211)
++|++|.+.+.+..+
T Consensus 169 ~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 169 RVFQDVAQKVVALRK 183 (184)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998877643
No 55
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=7.2e-32 Score=194.08 Aligned_cols=164 Identities=35% Similarity=0.554 Sum_probs=143.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 4689999999999999999999999887777777666554 446788888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
|||++++.++..+..|+..+..... .+.|+++++||+|+.+.+....+++..++...+++++++||+++.|++++|++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 161 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL 161 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999988877654 589999999999998777788889999999999999999999999999999999
Q ss_pred HHHHHH
Q 028294 164 AAKILQ 169 (211)
Q Consensus 164 ~~~~~~ 169 (211)
.+.+.+
T Consensus 162 ~~~i~~ 167 (168)
T 1u8z_A 162 MREIRA 167 (168)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988753
No 56
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=1.1e-31 Score=193.02 Aligned_cols=164 Identities=32% Similarity=0.536 Sum_probs=145.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|++|+|||||+++|.++.+...+.++.+... ...+.+++....+.+||+||++.+..++..++..+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 468999999999999999999999988877777766444 5567889999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+....++...++...+++++++||+++.|++++|++|
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 9999999999999999888876543 589999999999998777778888899999999999999999999999999999
Q ss_pred HHHHHH
Q 028294 164 AAKILQ 169 (211)
Q Consensus 164 ~~~~~~ 169 (211)
.+.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 887743
No 57
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=5.7e-33 Score=206.96 Aligned_cols=173 Identities=29% Similarity=0.486 Sum_probs=116.3
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCeeeEEEEEEEEECCE--EEEEEEEeCCCccchhhchHHHhc
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTIDGR--PIKLQIWDTAGQESFRSITRSYYR 77 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~ 77 (211)
.....++|+|+|++|+|||||+++|++. .+...+.++.+.++....+.+++. .+.+.+||+||++.+...+..+++
T Consensus 16 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 95 (208)
T 2yc2_C 16 TATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN 95 (208)
T ss_dssp SEEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh
Confidence 3456799999999999999999999988 777777777777777777888876 889999999999999999999999
Q ss_pred cccEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEecCCCCC-CCCCCHHHHHHHHHHcCCcEEEEeCCC-
Q 028294 78 GAAGALLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAH-RRAVSKEEGEQFAKENGLLFLEASART- 152 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~- 152 (211)
.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ .+.+..+++..++...+++++++||++
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 175 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPP 175 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC---
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCC
Confidence 99999999999999999999999999988765 5899999999999987 677788899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhc
Q 028294 153 AQNVEEAFIKTAAKILQNIQEG 174 (211)
Q Consensus 153 ~~~i~~~~~~i~~~~~~~~~~~ 174 (211)
+.|++++|++|.+.+.+.....
T Consensus 176 ~~gi~~l~~~i~~~~~~~~~~~ 197 (208)
T 2yc2_C 176 GKDADAPFLSIATTFYRNYEDK 197 (208)
T ss_dssp ----CHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988776654
No 58
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.1e-31 Score=193.29 Aligned_cols=162 Identities=37% Similarity=0.591 Sum_probs=144.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+...+..++..+|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3689999999999999999999999888877777776654 456678888899999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-CCcEEEEeCCCCCCHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-GLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|||++++.++..+..|+..+.... ..+.|+++++||+|+.+.+.+..++...++... +.+++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 999999999999999988887654 358999999999999877777888888888887 789999999999999999999
Q ss_pred HHHHH
Q 028294 163 TAAKI 167 (211)
Q Consensus 163 i~~~~ 167 (211)
|.+.+
T Consensus 161 l~~~i 165 (167)
T 1c1y_A 161 LVRQI 165 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 59
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2.3e-31 Score=194.92 Aligned_cols=167 Identities=35% Similarity=0.540 Sum_probs=149.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+|+|++|+|||||+++|++..+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..++..+|++|+
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 95 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 95 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEE
Confidence 5689999999999999999999999988777777666653 446788888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.+.+....+++..++...+++++++||+++.|++++|++|
T Consensus 96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 175 (187)
T 2a9k_A 96 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDL 175 (187)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence 9999999999999999988877654 589999999999998777778888999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 028294 164 AAKILQNIQ 172 (211)
Q Consensus 164 ~~~~~~~~~ 172 (211)
.+.+.++..
T Consensus 176 ~~~i~~~~~ 184 (187)
T 2a9k_A 176 MREIRARKM 184 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999876543
No 60
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.1e-31 Score=193.19 Aligned_cols=163 Identities=28% Similarity=0.412 Sum_probs=123.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.+||+++|++|+|||||+++|.+...... .++.+.++ ...+.+++..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 58999999999999999999997665433 33445555 34567899999999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 86 YDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
||++++.++..+..|+..+.... ..+.|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 99999999999999998887653 36899999999999988788888999999999999999999999999999999999
Q ss_pred HHHHHH
Q 028294 165 AKILQN 170 (211)
Q Consensus 165 ~~~~~~ 170 (211)
+.+.++
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988654
No 61
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=4.9e-32 Score=203.53 Aligned_cols=168 Identities=24% Similarity=0.448 Sum_probs=145.2
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
....+||+|+|++|||||||+++|++..+...+.++.+.++. ..+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 346799999999999999999999999998888888887774 4567788889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHH-HHHHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEE
Q 028294 83 LLVYDITRRETFNH-LSSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEA 148 (211)
Q Consensus 83 i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 148 (211)
|+|||++++.++.. +..|+..+.... .+.|+++|+||+|+.+. +.+..+++..++...++ +++++
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 181 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG 181 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence 99999999999998 688988887765 48999999999999753 56888999999999999 89999
Q ss_pred eCCCCCC-HHHHHHHHHHHHHHHHh
Q 028294 149 SARTAQN-VEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 149 s~~~~~~-i~~~~~~i~~~~~~~~~ 172 (211)
||+++.| ++++|+.|.+.+.....
T Consensus 182 SA~~g~g~v~~lf~~l~~~~~~~~~ 206 (214)
T 3q3j_B 182 SAFTSEKSIHSIFRTASMLCLNKPS 206 (214)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHC---
T ss_pred ccCCCcccHHHHHHHHHHHHhccCc
Confidence 9999998 99999999998875544
No 62
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-31 Score=197.10 Aligned_cols=165 Identities=28% Similarity=0.544 Sum_probs=144.2
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.....++|+++|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 345789999999999999999999999988877777766665 3446678888899999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEE
Q 028294 82 ALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLE 147 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~ 147 (211)
+|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+. +.+..+++..++...+. ++++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 171 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 171 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence 99999999999999987 7888887764 38999999999999753 35777888999998887 8999
Q ss_pred EeCCCCCCHHHHHHHHHHHHH
Q 028294 148 ASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 148 ~s~~~~~~i~~~~~~i~~~~~ 168 (211)
+||++|.|++++|++|.+.++
T Consensus 172 ~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 172 CSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred eeCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998775
No 63
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=2.1e-31 Score=197.81 Aligned_cols=169 Identities=30% Similarity=0.509 Sum_probs=138.4
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
..+..++|+++|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..++..+|+
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcE
Confidence 356789999999999999999999999888777777766555 4457788888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCC------------CCCCCHHHHHHHHHHcCC-cEEE
Q 028294 82 ALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAH------------RRAVSKEEGEQFAKENGL-LFLE 147 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~ 147 (211)
+|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+ ...+..+++..++...+. ++++
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 99999999999999987 6888887765 3899999999999965 245677888889888887 8999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHh
Q 028294 148 ASARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 148 ~s~~~~~~i~~~~~~i~~~~~~~~~ 172 (211)
+||+++.|++++|++|.+.+.+...
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EecCCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999876644
No 64
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-31 Score=200.73 Aligned_cols=168 Identities=27% Similarity=0.366 Sum_probs=139.0
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCC--CCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-hhhchHHHhcc
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRF--QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSITRSYYRG 78 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~ 78 (211)
.++..+||+|+|++|||||||+++|++... ...+ ++++.++....+.+++..+.+.+|||+|.+. +..+...+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 456779999999999999999999996443 3333 3456677677788899999999999999876 44566677888
Q ss_pred ccEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028294 79 AAGALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 157 (211)
+|++|+|||++++.+|..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999988776543 2479999999999997766778888888888889999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQN 170 (211)
Q Consensus 158 ~~~~~i~~~~~~~ 170 (211)
++|+.|.+.+..+
T Consensus 192 elf~~l~~~i~~~ 204 (211)
T 2g3y_A 192 ELFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988543
No 65
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1.3e-31 Score=196.45 Aligned_cols=166 Identities=27% Similarity=0.499 Sum_probs=142.7
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
..+..++|+++|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+||+||++.+..++..+++.+|+
T Consensus 3 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 3 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 3567899999999999999999999999988777787776664 446778888999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CcEEE
Q 028294 82 ALLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLE 147 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~ 147 (211)
+|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++..++...+ .++++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 160 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999999998 67888887654 48999999999999642 4577788899998877 68999
Q ss_pred EeCC-CCCCHHHHHHHHHHHHHH
Q 028294 148 ASAR-TAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 148 ~s~~-~~~~i~~~~~~i~~~~~~ 169 (211)
+||+ ++.|++++|+.|.+.+++
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred eeecCCCcCHHHHHHHHHHHHhc
Confidence 9999 689999999999988763
No 66
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-31 Score=198.59 Aligned_cols=165 Identities=27% Similarity=0.500 Sum_probs=143.0
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
.++.+||+|+|++|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+..++..++..+|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 357899999999999999999999999988877788776664 4467788889999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcC-CcEEEE
Q 028294 83 LLVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENG-LLFLEA 148 (211)
Q Consensus 83 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 148 (211)
|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++..++...+ .+++++
T Consensus 104 ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 104 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999999998 68888887654 48999999999999642 4577788889998887 689999
Q ss_pred eCC-CCCCHHHHHHHHHHHHHH
Q 028294 149 SAR-TAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 149 s~~-~~~~i~~~~~~i~~~~~~ 169 (211)
||+ ++.|++++|+.|.+.++.
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHhh
Confidence 999 689999999999988864
No 67
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.98 E-value=3.2e-30 Score=191.40 Aligned_cols=174 Identities=52% Similarity=0.884 Sum_probs=153.6
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+|++
T Consensus 2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 47889999999999999999999999998888888888888888889999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
++|+|+.+..++..+..|+..+......+.|+++++||+|+.+......+++..++...++.++++|++++.+++++|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999998888988776655568999999999999876677788889999999999999999999999999999
Q ss_pred HHHHHHHHHhhccc
Q 028294 163 TAAKILQNIQEGAL 176 (211)
Q Consensus 163 i~~~~~~~~~~~~~ 176 (211)
|.+.+.+.......
T Consensus 162 l~~~~~~~~~~~~~ 175 (199)
T 2f9l_A 162 ILTEIYRIVSQKQI 175 (199)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHhhccC
Confidence 99999877654443
No 68
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=7.9e-31 Score=189.45 Aligned_cols=162 Identities=31% Similarity=0.455 Sum_probs=141.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|++|+|||||+++|++..+...+.++.+.++. ..+..++..+.+.+|||||++.+...+..++..+|++|+
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 4689999999999999999999998887777777665554 346678888899999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|||++++.++..+..|+..+..... .+.|+++++||+|+.+.+.+..++...++...+++++++||+++.|++++|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 9999999999999889888776542 47999999999999877777778888888888999999999999999999999
Q ss_pred HHHHH
Q 028294 163 TAAKI 167 (211)
Q Consensus 163 i~~~~ 167 (211)
|.+.+
T Consensus 161 l~~~~ 165 (172)
T 2erx_A 161 LLNLE 165 (172)
T ss_dssp HHHTC
T ss_pred HHHHH
Confidence 98755
No 69
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.98 E-value=4e-30 Score=184.45 Aligned_cols=161 Identities=34% Similarity=0.596 Sum_probs=142.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEE
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 85 (211)
.++|+++|++|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 58999999999999999999999988777777755544 44567888889999999999999999999999999999999
Q ss_pred EECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 86 YDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 86 ~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
||++++.++..+..|+..+..... .+.|+++++||+|+.+ .....++...++...+++++++|++++.|+++++++|.
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 160 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988876653 4799999999999976 45667888899999999999999999999999999999
Q ss_pred HHHH
Q 028294 165 AKIL 168 (211)
Q Consensus 165 ~~~~ 168 (211)
+.+.
T Consensus 161 ~~~~ 164 (166)
T 2ce2_X 161 REIR 164 (166)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 70
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.98 E-value=1.6e-30 Score=193.24 Aligned_cols=163 Identities=32% Similarity=0.574 Sum_probs=142.9
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..++|+++|++|+|||||+++|.+..+...+.++.+.++.. .+.+++..+.+.+||+||++.+..++..++..+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 467899999999999999999999999887777777766653 3678888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEe
Q 028294 84 LVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEAS 149 (211)
Q Consensus 84 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 149 (211)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++..++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 99999999999998 57777776654 48999999999999764 45677888889988888 899999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 028294 150 ARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~~~~~ 168 (211)
|+++.|++++|++|.+.++
T Consensus 181 A~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999998875
No 71
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.98 E-value=4.6e-30 Score=188.88 Aligned_cols=165 Identities=35% Similarity=0.595 Sum_probs=134.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|.+|||||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++|+
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 568999999999999999999999988777777755554 3457788888999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 163 (211)
|||++++.++..+..|+..+..... .+.|+++|+||+|+.. .....+++.+++...+++++++||+++.|++++|++|
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 177 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL 177 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999888876553 5799999999999976 4567788899999999999999999999999999999
Q ss_pred HHHHHHHH
Q 028294 164 AAKILQNI 171 (211)
Q Consensus 164 ~~~~~~~~ 171 (211)
.+.+.+..
T Consensus 178 ~~~~~~~~ 185 (190)
T 3con_A 178 VREIRQYR 185 (190)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99887643
No 72
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.98 E-value=1.6e-31 Score=200.92 Aligned_cols=170 Identities=31% Similarity=0.499 Sum_probs=146.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+..++|+|+|++|||||||+++|++..+...+.++.+.+.....+... +..+.+.+|||||++.+..++..++..+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 467999999999999999999999888877777777777766665554 3447899999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~ 168 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH 168 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999999998877767999999999999877678888888888889999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 028294 163 TAAKILQNIQE 173 (211)
Q Consensus 163 i~~~~~~~~~~ 173 (211)
|.+.+.+....
T Consensus 169 l~~~~~~~~~~ 179 (218)
T 4djt_A 169 LARIFTGRPDL 179 (218)
T ss_dssp HHHHHHCCTTC
T ss_pred HHHHHhccccc
Confidence 99988766544
No 73
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.98 E-value=6.3e-32 Score=197.28 Aligned_cols=166 Identities=31% Similarity=0.611 Sum_probs=126.4
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
|+....++|+++|++|+|||||+++|....+...+.++.+..+.. .+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 81 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD 81 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC-CCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE-EEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence 677788999999999999999999999998877777766544432 2456677788899999999999999999999999
Q ss_pred EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCCC----------CCHHHHHHHHHHcCC-cEEEE
Q 028294 81 GALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRA----------VSKEEGEQFAKENGL-LFLEA 148 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~ 148 (211)
++|+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+... +..+++..++...+. +++++
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 160 (182)
T 3bwd_D 82 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC 160 (182)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999987 6888887764 3899999999999965433 367788888888886 89999
Q ss_pred eCCCCCCHHHHHHHHHHHHH
Q 028294 149 SARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 149 s~~~~~~i~~~~~~i~~~~~ 168 (211)
||+++.|++++|+.|.+.++
T Consensus 161 Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 161 SSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CTTTCTTHHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999988764
No 74
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.98 E-value=2.4e-30 Score=189.42 Aligned_cols=163 Identities=31% Similarity=0.580 Sum_probs=142.3
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..++..+|++|
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 3578999999999999999999999988777777766555 345678899999999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEe
Q 028294 84 LVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEAS 149 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 149 (211)
+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. +.+..+++..++...+. +++++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 999999999999987 68888776543 8999999999999653 45677788889888887 899999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 028294 150 ARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~~~~~ 168 (211)
|++|.|++++|+.|.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHS
T ss_pred CCCccCHHHHHHHHHHHHh
Confidence 9999999999999998874
No 75
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=1.9e-31 Score=196.99 Aligned_cols=168 Identities=20% Similarity=0.256 Sum_probs=137.1
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC-----------CCCeeeEEEEEEE-EECCEEEEEEEEeCCCccchh
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-----------DLTIGVEFGARMV-TIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~l~l~D~~G~~~~~ 69 (211)
..+..+||+|+|++|||||||++.+.+. +...+ .++.+.++....+ .+++..+.+.+|||||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 4567899999999999999999766654 33332 2344455544444 567778899999999999999
Q ss_pred hchHHHhccccEEEEEEECC------CHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC
Q 028294 70 SITRSYYRGAAGALLVYDIT------RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL 143 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 143 (211)
.++..+++.+|++|+|||++ +..++..+..|+..+. ....+.|+++|+||+|+.+. ...+++..++...++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCC
Confidence 99999999999999999999 5567777777777763 23358999999999999653 677889999999998
Q ss_pred -cEEEEeCCCCCCHHHHHHHHHHHHHHHHhh
Q 028294 144 -LFLEASARTAQNVEEAFIKTAAKILQNIQE 173 (211)
Q Consensus 144 -~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~ 173 (211)
+++++||++|.|++++|++|.+.+.++..+
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999887654
No 76
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=2.6e-30 Score=190.93 Aligned_cols=167 Identities=27% Similarity=0.378 Sum_probs=137.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCC--CCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-hhhchHHHhcccc
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-FRSITRSYYRGAA 80 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-~~~~~~~~~~~~d 80 (211)
++.+||+++|++|||||||+++|++.. +...+ ++++.++....+.+++..+.+.+|||+|.+. ...+...+++.+|
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~ 82 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 82 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence 457999999999999999999999643 33333 3456666667788899999999999999876 4556777888999
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Q 028294 81 GALLVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEA 159 (211)
Q Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 159 (211)
++|+|||++++.+|..+..|+..+.... ..+.|+++++||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus 83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 9999999999999999999988877653 357999999999999766677778888888888999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028294 160 FIKTAAKILQNI 171 (211)
Q Consensus 160 ~~~i~~~~~~~~ 171 (211)
|+.|.+.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886554
No 77
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=195.30 Aligned_cols=164 Identities=30% Similarity=0.589 Sum_probs=123.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..++..+|++|+
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 568999999999999999999999888777777765554 4456788999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeC
Q 028294 85 VYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASA 150 (211)
Q Consensus 85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~ 150 (211)
|||++++.++..+. .|+..+.... .+.|+++|+||+|+... +.+..+++..++...++ +++++||
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 99999999999986 6888877654 47999999999999754 25677788889988887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 028294 151 RTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 151 ~~~~~i~~~~~~i~~~~~~~ 170 (211)
++|.|++++|+.|.+.+.+.
T Consensus 191 ~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988754
No 78
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.9e-30 Score=192.73 Aligned_cols=164 Identities=29% Similarity=0.561 Sum_probs=137.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|++|+|||||+++|++..+...+.++.+..+... +.+++..+.+.+|||||++.+...+..++..+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 4678999999999999999999999998877777766666544 678888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEe
Q 028294 84 LVYDITRRETFNHL-SSWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEAS 149 (211)
Q Consensus 84 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s 149 (211)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+. +.+..+++..++...+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS 180 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence 99999999999988 57777776654 48999999999999654 45677788888888887 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 028294 150 ARTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~~~~~~ 169 (211)
|++|.|++++|++|.+.+++
T Consensus 181 A~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 181 AKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp TTTCTTHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998864
No 79
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=6.7e-34 Score=211.22 Aligned_cols=167 Identities=52% Similarity=0.940 Sum_probs=141.3
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
+++.++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 46789999999999999999999999888877777878888888889999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+....++...++...+++++++||+++.|++++|++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~ 189 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT 189 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999997776678999999999999876666666778888889999999999999999999999
Q ss_pred HHHHHHH
Q 028294 163 TAAKILQ 169 (211)
Q Consensus 163 i~~~~~~ 169 (211)
|.+.+.+
T Consensus 190 l~~~l~~ 196 (199)
T 3l0i_B 190 MAAEIKK 196 (199)
T ss_dssp HTTTTTT
T ss_pred HHHHHHH
Confidence 9876643
No 80
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=3.5e-30 Score=191.95 Aligned_cols=162 Identities=30% Similarity=0.584 Sum_probs=137.8
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|++|+|||||+++|+...+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++..+|++|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 3579999999999999999999999988877777765444 445677888899999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCC------------CCCHHHHHHHHHHcCC-cEEEEe
Q 028294 84 LVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENGL-LFLEAS 149 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 149 (211)
+|||++++.++..+. .|+..+.... .+.|+++|+||+|+.+.. .+..+++..++...+. +++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 999999999999987 7887777665 589999999999996543 2677788889988886 599999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 028294 150 ARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~~~~ 167 (211)
|++|.|++++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998754
No 81
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=6.7e-31 Score=198.04 Aligned_cols=167 Identities=30% Similarity=0.572 Sum_probs=147.1
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
....+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 35779999999999999999999887777777778888889888889999999999999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIK 162 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 162 (211)
|+|||++++.++..+..|+..+.... .+.|+++|+||+|+.+... . .+...++...+++++++||+++.|++++|++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 168 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLW 168 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988765 3899999999999975433 2 3555677778999999999999999999999
Q ss_pred HHHHHHHHHh
Q 028294 163 TAAKILQNIQ 172 (211)
Q Consensus 163 i~~~~~~~~~ 172 (211)
|.+.+.....
T Consensus 169 l~~~l~~~~~ 178 (221)
T 3gj0_A 169 LARKLIGDPN 178 (221)
T ss_dssp HHHHHHTCTT
T ss_pred HHHHHHhCcc
Confidence 9998876543
No 82
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=5.2e-29 Score=183.82 Aligned_cols=166 Identities=54% Similarity=0.915 Sum_probs=150.3
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
++++.++|+|+|++|||||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..++..+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 45678999999999999999999999999888888888999888889999999999999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 161 (211)
+++|+|..+..++.++..|+..+......+.|+++++||+|+.+......+++..++...++.++++|++++.+++++|+
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 105 ALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999998888888877665556789999999999987667778889999999999999999999999999999
Q ss_pred HHHHHH
Q 028294 162 KTAAKI 167 (211)
Q Consensus 162 ~i~~~~ 167 (211)
.|.+.+
T Consensus 185 ~l~~~i 190 (191)
T 1oix_A 185 TILTEI 190 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998765
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=2.3e-30 Score=191.63 Aligned_cols=163 Identities=15% Similarity=0.262 Sum_probs=129.1
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAG 81 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~ 81 (211)
.....+|+|+|++|||||||+++|++..+.. .+.++.+.... .+ +...+.+.+|||||++.+..++..+++.+|+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 89 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDA 89 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence 4578999999999999999999999999887 67777774443 23 3445678999999999999999999999999
Q ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcC--------CCCeEEEEEecCCCCCCCCCCHHHHHHH------HHHcCCcEEE
Q 028294 82 ALLVYDITRRETFNHLSSWLEDARQHAN--------PNMSIMLVGNKCDLAHRRAVSKEEGEQF------AKENGLLFLE 147 (211)
Q Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~ 147 (211)
+|+|||++++.++..+..|+..+..... .+.|+++|+||+|+..... .++.... +...++++++
T Consensus 90 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 167 (199)
T 4bas_A 90 VIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVIFA 167 (199)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEEEE
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEEEE
Confidence 9999999999999999998888765421 2799999999999976422 2222211 1346778999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHH
Q 028294 148 ASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 148 ~s~~~~~~i~~~~~~i~~~~~~~~ 171 (211)
+||+++.|++++|++|.+.+.++.
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred eeCCCccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999887654
No 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=1.5e-29 Score=182.79 Aligned_cols=159 Identities=22% Similarity=0.314 Sum_probs=126.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|++|+|||||+++|.+..+.. ..++.+... ..+.++ ...+.+|||||++.+...+..+++.+|++|
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 356899999999999999999999888754 444545433 344555 467899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHH-----HHHcCCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQF-----AKENGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~ 157 (211)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++.... +...+++++++||+++.|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 9999999999998888887775543 2589999999999996542 22333222 22245679999999999999
Q ss_pred HHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQ 169 (211)
Q Consensus 158 ~~~~~i~~~~~~ 169 (211)
++|++|.+.+.+
T Consensus 158 ~l~~~l~~~i~~ 169 (171)
T 1upt_A 158 EAMEWLVETLKS 169 (171)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 85
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=5.4e-30 Score=183.97 Aligned_cols=156 Identities=19% Similarity=0.318 Sum_probs=121.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEE
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 86 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~ 86 (211)
+||+++|++|+|||||+++|++..+.. ..++.+. ....+.. ..+.+.+||+||++.+...+..+++.+|++|+||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999887754 3445452 2233333 3467899999999999999999999999999999
Q ss_pred ECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHHHHH
Q 028294 87 DITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 87 d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~ 160 (211)
|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..++...... ..+++++++||+++.|++++|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999998888877553 23589999999999996532 2333322211 134569999999999999999
Q ss_pred HHHHHHHHH
Q 028294 161 IKTAAKILQ 169 (211)
Q Consensus 161 ~~i~~~~~~ 169 (211)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999887643
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=180.97 Aligned_cols=159 Identities=18% Similarity=0.268 Sum_probs=128.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCC-CCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 82 (211)
...++|+|+|++|+|||||+++|++.. +...+.++.+ +....+.+++ ..+.+|||||++.+...+..++..+|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 467999999999999999999999887 4555555555 3344455554 6789999999999999999999999999
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC---CCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCC
Q 028294 83 LLVYDITRRETFNHLSSWLEDARQHAN---PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQ 154 (211)
Q Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~ 154 (211)
|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+. ...++...... ..+++++++||+++.
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 172 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGE 172 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence 999999999999999999888776543 48999999999999653 34555655553 135679999999999
Q ss_pred CHHHHHHHHHHHHH
Q 028294 155 NVEEAFIKTAAKIL 168 (211)
Q Consensus 155 ~i~~~~~~i~~~~~ 168 (211)
|++++|++|.+.+.
T Consensus 173 gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 173 GLQEGVDWLQDQIQ 186 (190)
T ss_dssp THHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 87
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=4.6e-29 Score=185.07 Aligned_cols=155 Identities=23% Similarity=0.297 Sum_probs=120.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|++|||||||+++|.+..+.. +.++.+.+ ...+.+++ +.+.+|||||++.+..++..+++.+|++|+
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCc-cCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999877643 44454443 34456666 678999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----------------cCCcEE
Q 028294 85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----------------NGLLFL 146 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 146 (211)
|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ....+++.+++.. .+.+++
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 176 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence 999999999999999988876542 35899999999999965 4566777766552 235699
Q ss_pred EEeCCCCCCHHHHHHHHHHH
Q 028294 147 EASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 147 ~~s~~~~~~i~~~~~~i~~~ 166 (211)
++||++|.|++++|++|.+.
T Consensus 177 ~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 177 MCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHh
Confidence 99999999999999998754
No 88
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=8.7e-30 Score=187.36 Aligned_cols=160 Identities=18% Similarity=0.292 Sum_probs=128.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|++|+|||||+++|++..+...+.++.+.++.. +... .+.+.+||+||++.+...+..++..+|++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 357999999999999999999999998887777777776643 3333 567899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 157 (211)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++...... ..+++++++||+++.|++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 9999999999999998888776542 2589999999999996532 2233222211 134579999999999999
Q ss_pred HHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQ 169 (211)
Q Consensus 158 ~~~~~i~~~~~~ 169 (211)
++|++|.+.+.+
T Consensus 174 ~l~~~l~~~~~~ 185 (188)
T 1zd9_A 174 ITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999887643
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=1.5e-28 Score=181.15 Aligned_cols=155 Identities=21% Similarity=0.255 Sum_probs=126.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|++|||||||+++|.+..+.. +.++.+.+ ...+.+++ +.+.+|||||++.+...+..+++.+|++|+
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 45799999999999999999999988753 44554553 34466666 678999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH------------cCCcEEEEeCC
Q 028294 85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE------------NGLLFLEASAR 151 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~s~~ 151 (211)
|||++++.++..+..|+..+.... ..+.|+++++||+|+.+ ....+++.+.... .+++++++||+
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 174 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVV 174 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTT
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECC
Confidence 999999999999999988876542 25899999999999975 4556666655432 34579999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028294 152 TAQNVEEAFIKTAAK 166 (211)
Q Consensus 152 ~~~~i~~~~~~i~~~ 166 (211)
+|.|++++|++|.+.
T Consensus 175 ~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 175 MRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTBSHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhh
Confidence 999999999998753
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=1.8e-28 Score=179.73 Aligned_cols=160 Identities=21% Similarity=0.306 Sum_probs=128.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|++|+|||||+++|++.. ...+.++.+... ..+.++ ...+.+|||||++.+...+..+++.+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 467999999999999999999999888 555666666443 344555 467889999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 157 (211)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++...... ..+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999988888776542 2589999999999996542 3344333322 245679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQN 170 (211)
Q Consensus 158 ~~~~~i~~~~~~~ 170 (211)
++|++|.+.+.++
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999887544
No 91
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=1.5e-29 Score=185.48 Aligned_cols=163 Identities=23% Similarity=0.414 Sum_probs=120.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC--CCCCCCCCCeeeEEEEEEEEE---CCEEEEEEEEeCCCccchhhchHHHhcccc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK--RFQPVHDLTIGVEFGARMVTI---DGRPIKLQIWDTAGQESFRSITRSYYRGAA 80 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 80 (211)
.+||+|+|++|||||||+++|.+. .+...+.++.+.++....+.+ ++..+.+.+|||+|++.+..++..++..+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 444556667777776655443 345678999999999999999999999999
Q ss_pred EEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC---HHHHHHHHHHcCCc----EEEEeCCC
Q 028294 81 GALLVYDITRR-ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS---KEEGEQFAKENGLL----FLEASART 152 (211)
Q Consensus 81 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~s~~~ 152 (211)
++++|||++++ .++..+..|+..+.... .+.|+++|+||+|+.+..... .++...++...+++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999997 57888999998887654 479999999999996543221 22334555556776 99999999
Q ss_pred CC-CHHHHHHHHHHHHHH
Q 028294 153 AQ-NVEEAFIKTAAKILQ 169 (211)
Q Consensus 153 ~~-~i~~~~~~i~~~~~~ 169 (211)
+. +++++++.|.+.+.+
T Consensus 161 ~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 161 ESDALAKLRKTIINESLN 178 (184)
T ss_dssp CCHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHhc
Confidence 96 899999888877654
No 92
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=3e-28 Score=178.85 Aligned_cols=160 Identities=24% Similarity=0.336 Sum_probs=124.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|++|||||||+++|+++.+. .+.++.+.. ...+.+++ ..+.+|||||++.+...+..++..+|++|
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 35789999999999999999999988775 444454433 33445554 67899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 157 (211)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 9999999999999999988886643 258999999999999653 33445444432 235679999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQN 170 (211)
Q Consensus 158 ~~~~~i~~~~~~~ 170 (211)
++|++|.+.+...
T Consensus 167 ~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 167 QGLEWMMSRLKIR 179 (187)
T ss_dssp HHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877433
No 93
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1.3e-27 Score=190.08 Aligned_cols=163 Identities=31% Similarity=0.580 Sum_probs=142.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+++|.+|+|||||+++|+...+...+.++++..+ ...+.+++..+.+.+|||||++.+...+..++..+|++|+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 468999999999999999999999988877777766555 4456789999999999999999999999999999999999
Q ss_pred EEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC------------CCCCHHHHHHHHHHcCC-cEEEEeC
Q 028294 85 VYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR------------RAVSKEEGEQFAKENGL-LFLEASA 150 (211)
Q Consensus 85 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~ 150 (211)
|||++++.++..+. .|+..+..... +.|+++|+||+|+.+. ..+..+++..++...++ +++++||
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCT-TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCC-CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 99999999999887 67777776554 8999999999999653 45777888999999887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 028294 151 RTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 151 ~~~~~i~~~~~~i~~~~~~ 169 (211)
++|.|++++|+.|.+.++.
T Consensus 312 ~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 9999999999999988753
No 94
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=2.8e-29 Score=185.35 Aligned_cols=158 Identities=18% Similarity=0.300 Sum_probs=118.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|++|||||||+++|+...+.. ..++.+ +....+..+ .+.+.+||+||++.+...+..++..+|++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 467999999999999999999999877653 233333 333334444 467899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 157 (211)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 9999999999999988888775532 2589999999999996532 2333322211 134569999999999999
Q ss_pred HHHHHHHHHHH
Q 028294 158 EAFIKTAAKIL 168 (211)
Q Consensus 158 ~~~~~i~~~~~ 168 (211)
++|++|.+.+.
T Consensus 180 ~l~~~l~~~i~ 190 (192)
T 2b6h_A 180 DGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=3.8e-28 Score=177.61 Aligned_cols=159 Identities=21% Similarity=0.304 Sum_probs=123.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..++|+++|++|||||||+++|.+..+. .+.++.+.. ...+.++ .+.+.+||+||++.+...+..++..+|++|
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 56799999999999999999999987543 233444433 3344555 467889999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 157 (211)
+|||++++.++..+..|+..+... ...+.|+++++||+|+.+.. ..++...... ..+++++++||++|.|++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999998888776543 23589999999999997543 2333333221 134579999999999999
Q ss_pred HHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQ 169 (211)
Q Consensus 158 ~~~~~i~~~~~~ 169 (211)
++|++|.+.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 96
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=2.1e-28 Score=178.81 Aligned_cols=156 Identities=25% Similarity=0.346 Sum_probs=123.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|++|+|||||+++|++..+ ....++.+... ..+.+++ ..+.+||+||++.+...+..++..+|++|
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999998887 33444445333 3345554 67899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 157 (211)
+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ...++...... ..+++++++||+++.|++
T Consensus 94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 171 (181)
T 2h17_A 94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 171 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999988888776542 358999999999999653 33444444332 234579999999999999
Q ss_pred HHHHHHHHH
Q 028294 158 EAFIKTAAK 166 (211)
Q Consensus 158 ~~~~~i~~~ 166 (211)
++|++|.+.
T Consensus 172 ~l~~~l~~~ 180 (181)
T 2h17_A 172 QGLEWMMSR 180 (181)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999998754
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=3.1e-29 Score=184.34 Aligned_cols=160 Identities=19% Similarity=0.290 Sum_probs=125.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|++|+|||||+++|....+.. ..++.+.. ...+.++ ...+.+|||||++.+...+..+++.+|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 578999999999999999999998777643 34444433 3334455 467899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHH-----HHcCCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-----KENGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~ 157 (211)
+|||+++++++..+..|+..+.... ..+.|+++|+||+|+.+.. ..++..... ...+++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999998888887775543 2589999999999996542 223332221 1234579999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQN 170 (211)
Q Consensus 158 ~~~~~i~~~~~~~ 170 (211)
++|++|.+.+.++
T Consensus 173 ~l~~~l~~~i~~~ 185 (189)
T 2x77_A 173 EGMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999888654
No 98
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=2e-28 Score=181.25 Aligned_cols=162 Identities=23% Similarity=0.289 Sum_probs=120.7
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCccchhhch---HHHhcc
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQESFRSIT---RSYYRG 78 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~---~~~~~~ 78 (211)
.++.+||+++|++|||||||++++.+.. ..........+.......+. +..+.+.+||+||++.+.... ..+++.
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKM-SPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCC-CGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcC-CCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 3478999999999999999999887643 32222222222222223333 566789999999999988776 899999
Q ss_pred ccEEEEEEECCCH--HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC-------CCCCHHHHHHHHH----HcCCcE
Q 028294 79 AAGALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-------RAVSKEEGEQFAK----ENGLLF 145 (211)
Q Consensus 79 ~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~----~~~~~~ 145 (211)
+|++|+|||++++ +++..+..|+..+.... .+.|+++|+||+|+.+. +.+..++...++. ..++++
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 174 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSF 174 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEE
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcce
Confidence 9999999999997 67777777777764433 48999999999998642 2334445566776 567889
Q ss_pred EEEeCCCCCCHHHHHHHHHHHH
Q 028294 146 LEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 146 ~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
+++||++ .|++++|+.|.+.+
T Consensus 175 ~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 175 YLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEECTTS-THHHHHHHHHHHHT
T ss_pred EEEEech-hhHHHHHHHHHHHh
Confidence 9999999 99999999998765
No 99
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=9.8e-31 Score=194.77 Aligned_cols=162 Identities=30% Similarity=0.576 Sum_probs=135.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|++|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4679999999999999999999998888777666655444 344566777888999999999999999999999999999
Q ss_pred EEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCC------------CCCHHHHHHHHHHcCC-cEEEEe
Q 028294 84 LVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRR------------AVSKEEGEQFAKENGL-LFLEAS 149 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~s 149 (211)
+|||++++.++..+. .|+..+..... +.|+++|+||+|+.+.. .+..+++..++...+. +++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 999999999998886 67777665443 79999999999996542 3445666777777787 899999
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 028294 150 ARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 150 ~~~~~~i~~~~~~i~~~~ 167 (211)
|++|.|++++|+.|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999988765
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=5.7e-28 Score=176.44 Aligned_cols=161 Identities=22% Similarity=0.323 Sum_probs=124.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|++|||||||+++|.+..+ ..+.++.+.. ...+.+++ ..+.+||+||++.+...+..++..+|++|
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 5689999999999999999999997776 3344454533 33345554 67899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~ 157 (211)
+|+|++++.++..+..|+..+.... ..+.|+++++||+|+.+. ...++....... .+++++++||+++.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999999888876543 358999999999999653 334444443322 23469999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQNI 171 (211)
Q Consensus 158 ~~~~~i~~~~~~~~ 171 (211)
++|++|.+.+.+++
T Consensus 169 ~l~~~l~~~~~~~q 182 (183)
T 1moz_A 169 EGLDWLIDVIKEEQ 182 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887654
No 101
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1.4e-26 Score=175.32 Aligned_cols=167 Identities=19% Similarity=0.104 Sum_probs=118.1
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc------cch---hhchHH
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ------ESF---RSITRS 74 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~------~~~---~~~~~~ 74 (211)
+..++|+|+|++|||||||+++|++..+.....+..+.+........++ ..+.+|||||. +.. ......
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4679999999999999999999998876533323323333333334443 56889999998 331 122344
Q ss_pred HhccccEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHH---HHHHHHHHcC--CcEEE
Q 028294 75 YYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE---EGEQFAKENG--LLFLE 147 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~~ 147 (211)
++..+|++|+|||++++.++. ....|+..+.... .+.|+++|+||+|+.+...+..+ ....++...+ +++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS 183 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 578889999999999987654 2234444444321 37999999999999776666544 4556666666 78999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHHHhh
Q 028294 148 ASARTAQNVEEAFIKTAAKILQNIQE 173 (211)
Q Consensus 148 ~s~~~~~~i~~~~~~i~~~~~~~~~~ 173 (211)
+||++|.|++++|++|.+.+.+....
T Consensus 184 ~SA~~g~gi~~l~~~l~~~i~~~~~~ 209 (228)
T 2qu8_A 184 FSTLTGVGVEQAKITACELLKNDQAE 209 (228)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876654
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=4.7e-27 Score=169.29 Aligned_cols=153 Identities=21% Similarity=0.204 Sum_probs=114.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh------hchHHHhc--
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------SITRSYYR-- 77 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~------~~~~~~~~-- 77 (211)
.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||++.+. .+...++.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998776554444444555555555665 468899999988764 33455654
Q ss_pred cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028294 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 157 (211)
.+|++++|+|+++.+. ...|+..+.. .+.|+++|+||+|+........ +...++...+++++++||++|.|++
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 8999999999998643 3456666554 3799999999999864333332 3566777788999999999999999
Q ss_pred HHHHHHHHHH
Q 028294 158 EAFIKTAAKI 167 (211)
Q Consensus 158 ~~~~~i~~~~ 167 (211)
++|++|.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=2.3e-27 Score=177.66 Aligned_cols=160 Identities=16% Similarity=0.224 Sum_probs=114.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE-EEEEEEEeCCCccchhh-chHHHhccccE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR-PIKLQIWDTAGQESFRS-ITRSYYRGAAG 81 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~l~D~~G~~~~~~-~~~~~~~~~d~ 81 (211)
...++|+++|++|+|||||+++|++..+...+.++ +..+.. +.+++. .+.+.+|||||++.+.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 46799999999999999999999999887766543 444433 555543 57899999999999988 78889999999
Q ss_pred EEEEEECCCHH-HHHHHHHHHHHH-HH--hcCCCCeEEEEEecCCCCCCCCCC--HHHHHHHHH----------------
Q 028294 82 ALLVYDITRRE-TFNHLSSWLEDA-RQ--HANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAK---------------- 139 (211)
Q Consensus 82 ~i~v~d~~~~~-~~~~~~~~~~~~-~~--~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~---------------- 139 (211)
+|+|||+++.. ++.....|+..+ .. ....+.|+++|+||+|+....... .+.......
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999854 455555544443 32 123579999999999997543211 011111111
Q ss_pred -----------------Hc--CCcEEEEeCCCC------CCHHHHHHHHHHH
Q 028294 140 -----------------EN--GLLFLEASARTA------QNVEEAFIKTAAK 166 (211)
Q Consensus 140 -----------------~~--~~~~~~~s~~~~------~~i~~~~~~i~~~ 166 (211)
.. +++|+++||++| .|++++|++|.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 01 567999999999 9999999999875
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.3e-28 Score=187.24 Aligned_cols=164 Identities=27% Similarity=0.423 Sum_probs=121.8
Q ss_pred CCCceeeEEEEcCC---------CCCHHHHHHHHHh---CCCCCCCCCCe-eeEEEEEE--------------EEECCEE
Q 028294 2 SYDYLFKYIIIGDT---------GVGKSCLLLQFTD---KRFQPVHDLTI-GVEFGARM--------------VTIDGRP 54 (211)
Q Consensus 2 ~~~~~~~i~vvG~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~ 54 (211)
..++.+||+|+|.+ |||||||+++|++ ..+...+.+++ +.++.... ..+++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 35678999999999 9999999999998 55555555543 33322211 1246677
Q ss_pred EEEEEEe-----------------------CCCccchhhchHHHhc---------------------cccEEEEEEECCC
Q 028294 55 IKLQIWD-----------------------TAGQESFRSITRSYYR---------------------GAAGALLVYDITR 90 (211)
Q Consensus 55 ~~l~l~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~ 90 (211)
+.+.||| ++|++++..++..++. ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 8899999 6666666666666666 7999999999999
Q ss_pred H--HHHHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-cCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 91 R--ETFNHLSSWLEDARQH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-NGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 91 ~--~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
+ .++..+..|+..+... ...+.|+++|+||+|+.+.+.+ ++...++.. .+++++++||+++.|++++|++|.+.
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 8 8999999999888765 3358999999999999654332 566677766 47899999999999999999999887
Q ss_pred H
Q 028294 167 I 167 (211)
Q Consensus 167 ~ 167 (211)
+
T Consensus 253 l 253 (255)
T 3c5h_A 253 I 253 (255)
T ss_dssp H
T ss_pred h
Confidence 6
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.94 E-value=1.2e-26 Score=168.50 Aligned_cols=159 Identities=19% Similarity=0.196 Sum_probs=119.8
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..++|+++|++|+|||||+++|++..+.....++.+.+.....+.+++.. +.+|||||++.+...+..++..+|++|
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 467899999999999999999999988877766666666666666777654 679999999999999989999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-------C--CcEEEEeCCCCC
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-------G--LLFLEASARTAQ 154 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~s~~~~~ 154 (211)
+|+|++++...... ..+......+.|+++|+||+|+.+. ..+......... + ++++++||+++.
T Consensus 84 ~v~d~~~~~~~~~~----~~l~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 156 (178)
T 2lkc_A 84 LVVAADDGVMPQTV----EAINHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKE 156 (178)
T ss_dssp EEEETTCCCCHHHH----HHHHHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSH
T ss_pred EEEECCCCCcHHHH----HHHHHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCC
Confidence 99999884221111 1122222347999999999999653 223333322221 1 479999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 028294 155 NVEEAFIKTAAKILQNI 171 (211)
Q Consensus 155 ~i~~~~~~i~~~~~~~~ 171 (211)
|++++|++|.+.+....
T Consensus 157 gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 157 GLDHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhhhhc
Confidence 99999999998775543
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=2.7e-26 Score=181.05 Aligned_cols=160 Identities=20% Similarity=0.346 Sum_probs=125.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCC--C-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch-----hhchHHHh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ--P-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-----RSITRSYY 76 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-----~~~~~~~~ 76 (211)
..+||+++|++|||||||+++|++.... . .+.+|.+..+. .+.+++ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999977322 1 23344444444 344544 678999999999988 67888999
Q ss_pred ccccEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEecCCCCC--CCC----CCHHHHHHHHHHcC---CcE
Q 028294 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAH--RRA----VSKEEGEQFAKENG---LLF 145 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~ 145 (211)
+.+|++|+|||++++.++..+..|...+.... .++.|+++++||+|+.+ .+. ...+++.+++...+ +++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999999999999999877765554432 35899999999999976 332 44467778888886 689
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Q 028294 146 LEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 146 ~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
+++||++ .++.++|..+++.+.
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTTC
T ss_pred EEeeecC-ChHHHHHHHHHHHHc
Confidence 9999999 899999988876543
No 107
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=1.9e-26 Score=170.05 Aligned_cols=159 Identities=15% Similarity=0.203 Sum_probs=109.8
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC----------ccchhhc
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSI 71 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G----------~~~~~~~ 71 (211)
+.+..++|+|+|++|+|||||+++|++..+.....++.+.+.......+++ .+.+||||| ++.+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 445789999999999999999999998876555555556565555555544 478999999 6777777
Q ss_pred hHHHhccc---cEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCH--HHHHH-HHHHcCCcE
Q 028294 72 TRSYYRGA---AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSK--EEGEQ-FAKENGLLF 145 (211)
Q Consensus 72 ~~~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~~ 145 (211)
+..++..+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+.+...... +++.+ +....+.++
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 88888777 9999999999876655432 2222222 3789999999999976543321 22222 222245789
Q ss_pred EEEeCCCCCCHHHHHHHHHHHH
Q 028294 146 LEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 146 ~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
+++||+++.|++++|++|.+.+
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHHHHHh
Confidence 9999999999999999998765
No 108
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.4e-27 Score=188.66 Aligned_cols=158 Identities=19% Similarity=0.302 Sum_probs=117.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (211)
..++|+|+|++|+|||||+++|.+..+.... ++.+..+ ..+.. ..+.+.||||||++.+..++..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~--~~~~~--~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE--EEEEE--TTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE--EEEec--CcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4579999999999999999999988764432 3333333 22333 34678999999999999999999999999999
Q ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH-----cCCcEEEEeCCCCCCHHH
Q 028294 85 VYDITRRETFNHLSSWLEDARQHA-NPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE-----NGLLFLEASARTAQNVEE 158 (211)
Q Consensus 85 v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~~ 158 (211)
|||++++.++..+..|+..+.... ..+.|++||+||+|+.+.. ..++....... .+++++++||++|.|+++
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 999999999999888877765433 3589999999999997543 23333332221 245699999999999999
Q ss_pred HHHHHHHHHHH
Q 028294 159 AFIKTAAKILQ 169 (211)
Q Consensus 159 ~~~~i~~~~~~ 169 (211)
+|+.|.+.+.+
T Consensus 317 l~~~l~~~l~~ 327 (329)
T 3o47_A 317 GLDWLSNQLRN 327 (329)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999988743
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=7.6e-26 Score=165.91 Aligned_cols=159 Identities=19% Similarity=0.184 Sum_probs=121.9
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh------hchHHHhc
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------SITRSYYR 77 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~------~~~~~~~~ 77 (211)
...++|+++|++|||||||+++|.+..+.....++.+.+.....+.+++ ..+.+|||||++.+. .+...++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 3578999999999999999999998765544455556666666666665 568899999988764 34555654
Q ss_pred --cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028294 78 --GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 78 --~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
.+|++++|+|..+ +.....|+..+.. .+.|+++++||+|+....... ++...++...+++++++||+++.|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence 4899999999876 3445566666554 478999999999986543333 346677777889999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKILQNI 171 (211)
Q Consensus 156 i~~~~~~i~~~~~~~~ 171 (211)
++++|++|.+.+....
T Consensus 156 v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 156 IEELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999998875544
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.93 E-value=3.6e-26 Score=167.77 Aligned_cols=157 Identities=17% Similarity=0.189 Sum_probs=115.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC-----------ccchhhchHHH
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG-----------QESFRSITRSY 75 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G-----------~~~~~~~~~~~ 75 (211)
++|+++|++|+|||||+++|++..+.....++.+. ....+.++ .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~--~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR--KIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT--SCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccc--eeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999998877665554332 33334444 578999999 56677777777
Q ss_pred hcc-ccEEEEEEECCCHHHHHHH-HHHHHH---------HHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCc
Q 028294 76 YRG-AAGALLVYDITRRETFNHL-SSWLED---------ARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLL 144 (211)
Q Consensus 76 ~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~---------~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 144 (211)
+.. ++++++|+++.+..++..+ ..|... +......+.|+++|+||+|+.... .++...++...+.+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 7766666666666666665 445431 122223589999999999996543 46677788877764
Q ss_pred -------EEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028294 145 -------FLEASARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 145 -------~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 172 (211)
++++||++|.|++++|++|.+.+.+..+
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 7999999999999999999998865443
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=2.3e-26 Score=192.60 Aligned_cols=162 Identities=19% Similarity=0.345 Sum_probs=125.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+|+|.+|+|||||+++|++..+.. ..++.+.++.. +.+ ..+.+.||||||++.+..++..++..+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET--VTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEE--EES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEEE--EEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 457999999999999999999999988654 34555555433 333 4467899999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCCCCCCCCCCHHHHHHHHH-----HcCCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCDLAHRRAVSKEEGEQFAK-----ENGLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 157 (211)
+|||++++.++..+..|+..+..... .+.|++||+||+|+.+.. ..++...... ..+++++++||++|.|++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 472 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCHH
Confidence 99999999999999998888755432 589999999999996532 3333332211 123459999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 028294 158 EAFIKTAAKILQNIQ 172 (211)
Q Consensus 158 ~~~~~i~~~~~~~~~ 172 (211)
++|++|.+.+.+..+
T Consensus 473 ~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 473 EGLTWLTSNYKSKLA 487 (497)
T ss_dssp HHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999987754443
No 112
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=2.8e-27 Score=185.78 Aligned_cols=158 Identities=18% Similarity=0.252 Sum_probs=118.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCC---CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh---chHHHhccccE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQP---VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS---ITRSYYRGAAG 81 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~---~~~~~~~~~d~ 81 (211)
||+++|+.|||||||++++.+..... ...++.+.++.. ++ ..+.++||||||++++.. .+..+++.+++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887553322 244565655542 33 347899999999999974 46889999999
Q ss_pred EEEEEECCCH--HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCC-------CCCCHHHHHHHHHH----cCCcEEEE
Q 028294 82 ALLVYDITRR--ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHR-------RAVSKEEGEQFAKE----NGLLFLEA 148 (211)
Q Consensus 82 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~ 148 (211)
+|+|||++++ +....+..|+..+... .++.|+++++||+|+..+ +.+..++++++++. .++.|+++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT 154 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT 154 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence 9999999997 3333344444444433 358999999999999754 23455556666664 57889999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHHHh
Q 028294 149 SARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 149 s~~~~~~i~~~~~~i~~~~~~~~~ 172 (211)
||++ .+|.++|..|.+.+..+.+
T Consensus 155 SAkd-~nV~eAFs~iv~~li~~~~ 177 (331)
T 3r7w_B 155 SIFD-HSIYEAFSRIVQKLIPELS 177 (331)
T ss_dssp CSSS-SHHHHHHHHHHTTSSTTHH
T ss_pred ccCC-CcHHHHHHHHHHHHHhhHH
Confidence 9998 5999999999887765554
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.93 E-value=1.4e-25 Score=160.19 Aligned_cols=150 Identities=19% Similarity=0.179 Sum_probs=105.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-------hhhchHHHhcc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES-------FRSITRSYYRG 78 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-------~~~~~~~~~~~ 78 (211)
.+|+++|++|+|||||+++|.+..+.. ...+..+.+.....+..++. .+.+|||||... +...+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 689999999999999999999887542 22333344444555566664 578999999886 34456678899
Q ss_pred ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCHH
Q 028294 79 AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNVE 157 (211)
Q Consensus 79 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~ 157 (211)
+|++|+|+|++++.+... .++..+... .+.|+++|+||+|+.+.. ++..+++ ..++ +++++||+++.|++
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~ 150 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE 150 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence 999999999988533221 222222222 378999999999996542 2233444 5666 79999999999999
Q ss_pred HHHHHHHHHH
Q 028294 158 EAFIKTAAKI 167 (211)
Q Consensus 158 ~~~~~i~~~~ 167 (211)
++|++|.+.+
T Consensus 151 ~l~~~l~~~l 160 (161)
T 2dyk_A 151 ELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999988753
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=6.4e-26 Score=164.51 Aligned_cols=153 Identities=22% Similarity=0.244 Sum_probs=112.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc--------hHHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI--------TRSY 75 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~--------~~~~ 75 (211)
...+|+++|++|+|||||+++|.+.... ....+..+.++....+.+++.. +.+|||||.+.+... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4579999999999999999999987643 2223333555555667777644 789999998653211 1245
Q ss_pred hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028294 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
++.+|++|+|||++++.++. ...|+..+......+.|+++|+||+|+.+... .++...+.+++++||+++.|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 78999999999999987765 34677777666555799999999999854221 01112456899999999999
Q ss_pred HHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKI 167 (211)
Q Consensus 156 i~~~~~~i~~~~ 167 (211)
++++|+.|.+.+
T Consensus 153 v~~l~~~l~~~~ 164 (172)
T 2gj8_A 153 VDVLRNHLKQSM 164 (172)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 115
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=3.9e-26 Score=192.66 Aligned_cols=166 Identities=19% Similarity=0.260 Sum_probs=125.5
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEE------EEE--CCEEEEEEEEeCCCccchhhch
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM------VTI--DGRPIKLQIWDTAGQESFRSIT 72 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~l~l~D~~G~~~~~~~~ 72 (211)
|.....+||+++|.+|||||||+++|++..+.....++.+.++.... +.+ ++..+.+.+||+||++.+....
T Consensus 36 ~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~ 115 (535)
T 3dpu_A 36 LVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH 115 (535)
T ss_dssp CBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC
T ss_pred cccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH
Confidence 34557899999999999999999999999888777777777766442 112 3345789999999999999999
Q ss_pred HHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCC
Q 028294 73 RSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART 152 (211)
Q Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 152 (211)
..+++.+|++|+|+|+++. ..+..|+..+..... +.|+++|+||+|+.+...+..++....+...+.+++++||++
T Consensus 116 ~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~ 191 (535)
T 3dpu_A 116 QFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKN 191 (535)
T ss_dssp HHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-SCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC--
T ss_pred HHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-CCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCc
Confidence 9999999999999999765 445678888777653 799999999999987777788888888888899999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028294 153 AQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 153 ~~~i~~~~~~i~~~~~~~ 170 (211)
|.|++++++.|.+.+.+.
T Consensus 192 g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 192 GDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp ---CTTHHHHHHHHHTCT
T ss_pred ccCHHHHHHHHHHHHhcc
Confidence 999999999998887543
No 116
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.93 E-value=1.1e-24 Score=171.95 Aligned_cols=163 Identities=17% Similarity=0.082 Sum_probs=122.9
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-eeeEEEEEEEEECCEEEEEEEEeCCCccchh----------h
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-IGVEFGARMVTIDGRPIKLQIWDTAGQESFR----------S 70 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~----------~ 70 (211)
+....-.|+++|.+|||||||+|+|++..+......+ ++..........+ ...++.||||||..... .
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~ 84 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVE 84 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHH
Confidence 3456678999999999999999999999876433322 2222222223333 14568899999985443 5
Q ss_pred chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEE
Q 028294 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEA 148 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~ 148 (211)
....++..+|++++|+|++++.+......|+..+... +.|+++|+||+|+........+....+....+ .+++++
T Consensus 85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~v 161 (308)
T 3iev_A 85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPI 161 (308)
T ss_dssp HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEEC
T ss_pred HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 6677889999999999999987777776667766653 78999999999997444455566777777765 679999
Q ss_pred eCCCCCCHHHHHHHHHHHHH
Q 028294 149 SARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 149 s~~~~~~i~~~~~~i~~~~~ 168 (211)
||++|.|++++|+.|.+.+.
T Consensus 162 SA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 162 SALKGANLDELVKTILKYLP 181 (308)
T ss_dssp BTTTTBSHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHhCc
Confidence 99999999999999887763
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=5.8e-25 Score=169.27 Aligned_cols=156 Identities=21% Similarity=0.181 Sum_probs=117.6
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc------hHHHh-
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI------TRSYY- 76 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------~~~~~- 76 (211)
...++|+++|++|||||||+|+|++..+.....+.++.......+...+ ..+.+||+||...+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4578999999999999999999998776544444444444444444444 57899999998876642 34555
Q ss_pred -ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028294 77 -RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 77 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
..+|++|+|+|+++.+... .|+..+.. .+.|+++++||+|+.....+. .+...++...+++++++||++|.|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~g 153 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEG 153 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence 5899999999999865432 34444443 379999999999986544333 236677778899999999999999
Q ss_pred HHHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKIL 168 (211)
Q Consensus 156 i~~~~~~i~~~~~ 168 (211)
++++|+.|.+.+.
T Consensus 154 i~el~~~i~~~~~ 166 (258)
T 3a1s_A 154 LEELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988653
No 118
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=8.3e-25 Score=160.97 Aligned_cols=157 Identities=16% Similarity=0.209 Sum_probs=112.6
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC----------ccchhhc
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSI 71 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G----------~~~~~~~ 71 (211)
+....++|+|+|++|+|||||+++|++..... ..++.+.+........+. .+.+||||| ++.+..+
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~ 94 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRL 94 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHH
Confidence 34567899999999999999999999887433 333434444444333333 467999999 6667777
Q ss_pred hHHHhccc---cEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHH-cCC
Q 028294 72 TRSYYRGA---AGALLVYDITRRETF--NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKE-NGL 143 (211)
Q Consensus 72 ~~~~~~~~---d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~-~~~ 143 (211)
+..++..+ |++++|+|+.+..+. ..+..|+... +.|+++|+||+|+.+... ...++...++.. .++
T Consensus 95 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 3pqc_A 95 VEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEY 168 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCS
T ss_pred HHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCC
Confidence 77777766 899999999875332 2233333222 789999999999965332 223444555555 346
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 144 LFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 144 ~~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
+++++||+++.|++++|++|.+.+.
T Consensus 169 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 169 TIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ceEEEecCCCCCHHHHHHHHHHHhh
Confidence 8999999999999999999998774
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=2.7e-25 Score=172.15 Aligned_cols=153 Identities=19% Similarity=0.191 Sum_probs=115.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh------hchHHHhc-
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------SITRSYYR- 77 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~------~~~~~~~~- 77 (211)
+.++|+++|++|||||||+|+|++........+ |.+.......++. ...+.+|||||...+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 468999999999999999999998764443333 4444444455565 6678999999988765 34566665
Q ss_pred -cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028294 78 -GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 78 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
.+|++|+|+|+++.+.. ..|...+.. .+.|+++++||+|+....... .....++...+++++++||++|.|+
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi 151 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGV 151 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSH
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCH
Confidence 69999999999886543 345444444 389999999999986433333 3456677778999999999999999
Q ss_pred HHHHHHHHHHH
Q 028294 157 EEAFIKTAAKI 167 (211)
Q Consensus 157 ~~~~~~i~~~~ 167 (211)
+++|+.|.+.+
T Consensus 152 ~el~~~i~~~~ 162 (272)
T 3b1v_A 152 DQVVKKAAHTT 162 (272)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=2.3e-25 Score=171.25 Aligned_cols=151 Identities=17% Similarity=0.121 Sum_probs=116.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh----------chHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----------ITRSYY 76 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----------~~~~~~ 76 (211)
.+|+++|.+|||||||+|+|++........+.++.+.....+.+++. .+.+|||||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999988765555566666777777777765 678999999876653 455666
Q ss_pred --ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCC
Q 028294 77 --RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ 154 (211)
Q Consensus 77 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 154 (211)
..+|++|+|+|+++.+....+..+ +. ..+.|+++++||+|+....... .....+....+++++++||++|.
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~---~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQ---LF---ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI 152 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHH---HT---TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHH---HH---HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence 899999999999987655443333 22 2389999999999985433222 22445666789999999999999
Q ss_pred CHHHHHHHHHHH
Q 028294 155 NVEEAFIKTAAK 166 (211)
Q Consensus 155 ~i~~~~~~i~~~ 166 (211)
|++++|+.|.+.
T Consensus 153 gi~el~~~i~~~ 164 (256)
T 3iby_A 153 GIPALQQSLLHC 164 (256)
T ss_dssp SHHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998765
No 121
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=7.5e-25 Score=164.89 Aligned_cols=165 Identities=15% Similarity=0.110 Sum_probs=109.7
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEEC-CEEEEEEEEeCCCc----------cchhhc
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTID-GRPIKLQIWDTAGQ----------ESFRSI 71 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~----------~~~~~~ 71 (211)
....++|+|+|.+|+|||||+|+|++...........+.+.......+. .....+.||||||. +.+...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 3567899999999999999999999886322222222333333334443 33456889999994 344555
Q ss_pred hHHHhcc---ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC--HHHHHHHHHH------
Q 028294 72 TRSYYRG---AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KEEGEQFAKE------ 140 (211)
Q Consensus 72 ~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~~~~~~~~~------ 140 (211)
...++.. +|++|+|+|+.++.+.. ...|+..+.. .+.|+++|+||+|+....... .+........
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 6666655 78899999998753322 2234444443 378999999999996533211 1122222222
Q ss_pred -cCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028294 141 -NGLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 141 -~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 171 (211)
.+.+++++||+++.|++++|++|.+.+....
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4567999999999999999999998875543
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.91 E-value=1.2e-24 Score=168.99 Aligned_cols=154 Identities=17% Similarity=0.152 Sum_probs=114.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh----------chHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----------ITRS 74 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----------~~~~ 74 (211)
..++|+++|.+|+|||||+|+|++..+.....+.++.+.....+...+. .+.+|||||...+.. ....
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence 4689999999999999999999988765445555556665555655553 577899999877652 2333
Q ss_pred Hh--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCC
Q 028294 75 YY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART 152 (211)
Q Consensus 75 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 152 (211)
++ ..+|++|+|+|+++.+....+..+ +... +.|+++|+||+|+.+..... .....+....+++++++||++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQ---LLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence 33 799999999999986654444333 3332 79999999999985433221 224566677899999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028294 153 AQNVEEAFIKTAAKI 167 (211)
Q Consensus 153 ~~~i~~~~~~i~~~~ 167 (211)
|.|++++++.|.+.+
T Consensus 153 g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 153 GRGIEALKLAIDRYK 167 (274)
T ss_dssp GHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999998887655
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=5.2e-24 Score=165.23 Aligned_cols=156 Identities=21% Similarity=0.183 Sum_probs=118.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh------chHHHh--
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS------ITRSYY-- 76 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~------~~~~~~-- 76 (211)
+.++|+++|++|||||||+|+|++..+.....+..+.+.....+..++.. +.+||+||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 35899999999999999999999887755555666677766666676654 78999999887665 455555
Q ss_pred ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028294 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
..+|++|+|+|+++.+. ...|+..+.... ..|+++++||+|+.+...... ....+....+++++++|+++|.|+
T Consensus 80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi 153 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMR---NLFLTLELFEME--VKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGV 153 (271)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTH
T ss_pred cCCcEEEEEecCCcchh---hHHHHHHHHhcC--CCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCH
Confidence 68999999999988632 233444444331 399999999999854322221 255667778999999999999999
Q ss_pred HHHHHHHHHHHH
Q 028294 157 EEAFIKTAAKIL 168 (211)
Q Consensus 157 ~~~~~~i~~~~~ 168 (211)
+++++.+.+.+.
T Consensus 154 ~~l~~~i~~~~~ 165 (271)
T 3k53_A 154 EELKRMIALMAE 165 (271)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.90 E-value=1.3e-24 Score=163.18 Aligned_cols=144 Identities=19% Similarity=0.274 Sum_probs=105.4
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcc-
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG- 78 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~- 78 (211)
....++|+++|++|+|||||+++|.+..+... +.++.+. +.....+.+||+||++.+...+..++..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET---------TGGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE---------EeeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 34679999999999999999999998876542 2233222 1134568899999999998888888877
Q ss_pred ---ccEEEEEEECC-CHHHHHHHHHHHHHHHHh----cCCCCeEEEEEecCCCCCCCCCC------HHHHHHHHHHcCCc
Q 028294 79 ---AAGALLVYDIT-RRETFNHLSSWLEDARQH----ANPNMSIMLVGNKCDLAHRRAVS------KEEGEQFAKENGLL 144 (211)
Q Consensus 79 ---~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~ 144 (211)
+|++|+|||++ ++.++.....|+..+... ...+.|+++|+||+|+....... .+++..++...+..
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 159 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS 159 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999 888888888888777554 33589999999999997655433 34456666667788
Q ss_pred EEEEeCCCCCC
Q 028294 145 FLEASARTAQN 155 (211)
Q Consensus 145 ~~~~s~~~~~~ 155 (211)
++++|++++.+
T Consensus 160 ~~~~Sa~~~~~ 170 (218)
T 1nrj_B 160 LNEVERKINEE 170 (218)
T ss_dssp HHC--------
T ss_pred ccccccccccc
Confidence 99999998765
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=2.4e-23 Score=171.58 Aligned_cols=161 Identities=17% Similarity=0.123 Sum_probs=115.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCc----------cchhhch
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQ----------ESFRSIT 72 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~----------~~~~~~~ 72 (211)
+..++|+++|.+|||||||+|+|++.... ....+.++.+.....+..++.. +.||||||+ +.+....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHH
Confidence 35689999999999999999999988753 2333333455544556667654 789999997 4444433
Q ss_pred H-HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHH-HH----cCCcEE
Q 028294 73 R-SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-KE----NGLLFL 146 (211)
Q Consensus 73 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~~----~~~~~~ 146 (211)
. .+++.+|++|+|+|++++.+++.. .|...+.. .+.|+++++||+|+.+......++..+.. .. .+++++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 3 478899999999999998776665 45555543 37999999999999765554434333222 22 367899
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Q 028294 147 EASARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 147 ~~s~~~~~~i~~~~~~i~~~~~~~ 170 (211)
++||++|.|++++|+.+.+.+...
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHh
Confidence 999999999999999998877653
No 126
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=2.2e-23 Score=163.78 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=106.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-CCeeeEEEEEEEEECCEEEEEEEEeCCCccc--------hhhchHHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-LTIGVEFGARMVTIDGRPIKLQIWDTAGQES--------FRSITRSY 75 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--------~~~~~~~~ 75 (211)
...+|+|+|.+|+|||||+|+|++..+..... +.++..........+ ..++.||||||... +......+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 35679999999999999999999988764322 222222111122223 46788999999765 44556678
Q ss_pred hccccEEEEEEECCCHHHHHHHHHHH-HHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCC
Q 028294 76 YRGAAGALLVYDITRRETFNHLSSWL-EDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQ 154 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 154 (211)
++.+|++++|+|++++.+.. ..|+ ..+.... .+.|+++|+||+|+........+....+ ....+++++||++|.
T Consensus 84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~iSA~~g~ 158 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRMLSALDER 158 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEECCTTCHH
T ss_pred HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEEeCCCCC
Confidence 89999999999998864433 2343 3444332 4799999999999965322001222222 123468999999999
Q ss_pred CHHHHHHHHHHHH
Q 028294 155 NVEEAFIKTAAKI 167 (211)
Q Consensus 155 ~i~~~~~~i~~~~ 167 (211)
|++++++.|.+.+
T Consensus 159 gv~~l~~~l~~~l 171 (301)
T 1wf3_A 159 QVAELKADLLALM 171 (301)
T ss_dssp HHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhc
Confidence 9999999887654
No 127
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.89 E-value=2.1e-22 Score=161.88 Aligned_cols=163 Identities=18% Similarity=0.158 Sum_probs=119.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh---------hchHHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR---------SITRSY 75 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~---------~~~~~~ 75 (211)
..++|+++|++|+|||||+++|.+........+..+.......+..+ ...+.+|||||..... .....+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 56899999999999999999999876433222222333333333334 3568899999975421 112234
Q ss_pred hccccEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Q 028294 76 YRGAAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTA 153 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 153 (211)
...+|++++|+|++++. ++.....|+..+..... +.|+++|+||+|+.+... .++...++...+.+++++||++|
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g 320 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALKG 320 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTTT
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCCC
Confidence 55799999999998876 56777788888776544 799999999999965332 24455666677889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 028294 154 QNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 154 ~~i~~~~~~i~~~~~~~~~ 172 (211)
.|+++++++|.+.+.....
T Consensus 321 ~gi~~l~~~i~~~l~~~~~ 339 (357)
T 2e87_A 321 TGIDLVKEEIIKTLRPLAE 339 (357)
T ss_dssp BTHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHh
Confidence 9999999999988865533
No 128
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=6.1e-23 Score=169.99 Aligned_cols=162 Identities=17% Similarity=0.127 Sum_probs=118.3
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC----------ccchhhch
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG----------QESFRSIT 72 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G----------~~~~~~~~ 72 (211)
+..++|+++|.+|+|||||+|+|++... .....+.++.+.....+..++. .+.|||||| ++.+....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 4578999999999999999999997653 2233333344444445566665 578999999 56666654
Q ss_pred H-HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHc-----CCcEE
Q 028294 73 R-SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKEN-----GLLFL 146 (211)
Q Consensus 73 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~ 146 (211)
. .++..+|++|+|+|+++..+. ....|+..+.. .+.|+++|+||+|+.+......++..+.+... +++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 346 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence 4 478899999999999885432 22344444443 37999999999999876666667776666654 57899
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHHH
Q 028294 147 EASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 147 ~~s~~~~~~i~~~~~~i~~~~~~~~ 171 (211)
++||++|.|++++|+.+.+.+....
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998775543
No 129
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=5.8e-23 Score=170.14 Aligned_cols=157 Identities=18% Similarity=0.126 Sum_probs=98.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhch--------HHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSIT--------RSY 75 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~--------~~~ 75 (211)
..++|+|+|++|+|||||+|+|++.... ....+.++.+.....+.+++. .+.+|||||...+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 3578999999999999999999987532 333344455555566677764 58899999987765443 336
Q ss_pred hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028294 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
+..+|++|+|+|++++.++..+..+...+.... +.|+++|+||+|+...... ..+.+......+++++||++|.|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~G 384 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDG 384 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBS
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCC
Confidence 789999999999999877654333333333332 7999999999999764432 12333333246899999999999
Q ss_pred HHHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKIL 168 (211)
Q Consensus 156 i~~~~~~i~~~~~ 168 (211)
+++++++|.+.+.
T Consensus 385 I~eL~~~i~~~~~ 397 (476)
T 3gee_A 385 IDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988775
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=1.8e-22 Score=166.40 Aligned_cols=151 Identities=22% Similarity=0.268 Sum_probs=102.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc---------hhhchHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---------FRSITRSYY 76 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------~~~~~~~~~ 76 (211)
.+|+++|.+|||||||+|+|++.... ....+.++.+.....+.+++.. +.+|||||.+. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence 58999999999999999999987753 2333344444445556667654 67999999764 234567789
Q ss_pred ccccEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHH-HHHHHHcCC-cEEEEeCCC
Q 028294 77 RGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG-EQFAKENGL-LFLEASART 152 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~ 152 (211)
+.+|++|+|+|+.++.+... +..|+. . .++|+++|+||+|+... . ..+. ..+. ..++ +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~---~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLR---K---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHH---H---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHH---H---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 99999999999987544322 223322 2 27899999999998431 0 1222 3333 4565 689999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 028294 153 AQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 153 ~~~i~~~~~~i~~~~~~ 169 (211)
|.|+.++++.|.+.+.+
T Consensus 150 g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 150 NINLDTMLETIIKKLEE 166 (439)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccc
Confidence 99999999999888754
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=6.4e-23 Score=163.36 Aligned_cols=157 Identities=18% Similarity=0.183 Sum_probs=116.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----hhhchHHHhc---cc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----FRSITRSYYR---GA 79 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----~~~~~~~~~~---~~ 79 (211)
.+|+|+|.++||||||+++|+.........+..+.......+.+++ ...+.+||+||... +..+...+++ .+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 4789999999999999999997764322223223333333445554 24688999999543 3334455554 49
Q ss_pred cEEEEEEECCC---HHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEeCCC
Q 028294 80 AGALLVYDITR---RETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASART 152 (211)
Q Consensus 80 d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~ 152 (211)
|++|+|+|+++ +.++..+..|+..+..+.. .+.|+++|+||+|+.... +..+.+..... .+++++||++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCC
Confidence 99999999998 7788888889888887652 489999999999986422 34555666655 6899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q 028294 153 AQNVEEAFIKTAAKIL 168 (211)
Q Consensus 153 ~~~i~~~~~~i~~~~~ 168 (211)
+.|+++++++|.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~ 329 (342)
T 1lnz_A 314 REGLRELLFEVANQLE 329 (342)
T ss_dssp SSTTHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999988874
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.87 E-value=2.3e-23 Score=170.02 Aligned_cols=158 Identities=14% Similarity=0.139 Sum_probs=114.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc-------hHHH
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI-------TRSY 75 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~-------~~~~ 75 (211)
...++|+|+|+.++|||||+++|++..+.. ...+..+.+.....+.+.+.. .+.+|||||++.+..+ ...+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHHH
Confidence 467899999999999999999999887632 223333444445555555432 6889999998876554 4567
Q ss_pred hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028294 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
+..+|++|+|+|+... .....|+..+... +.|+++|+||+|+...... +..+.+....+++++++||++|.|
T Consensus 111 l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~g 182 (423)
T 3qq5_A 111 FYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKG 182 (423)
T ss_dssp HTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred HhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCC
Confidence 8899999999999433 2345566666554 7999999999999765543 556666666788999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKILQN 170 (211)
Q Consensus 156 i~~~~~~i~~~~~~~ 170 (211)
++++|+.|.+.+.+.
T Consensus 183 I~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 183 FDDIGKTISEILPGD 197 (423)
T ss_dssp TTTHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999999887433
No 133
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=2.4e-21 Score=158.09 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=114.6
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEE-------EE---------EE---CCEEEEEEEEeC
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR-------MV---------TI---DGRPIKLQIWDT 62 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~l~l~D~ 62 (211)
.....++|+++|++++|||||+++|++.......... ..+.... .+ .. ......+.+|||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYA-ETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEE-EEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCcc-ccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence 4567799999999999999999999975433311100 1110000 00 00 122367899999
Q ss_pred CCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC--CHHHHHHHHHH
Q 028294 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--SKEEGEQFAKE 140 (211)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~ 140 (211)
||++.+.......+..+|++|+|+|++++.++.+...++..+.... ..|+++++||+|+.+.... ..++..++...
T Consensus 83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998765666677766665543 3589999999999653221 11222222222
Q ss_pred ---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 141 ---NGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 141 ---~~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
.+++++++||++|.|++++++.|.+.+
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 256899999999999999999888765
No 134
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=148.90 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=105.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CeeeEEEEEEEEECCEEEEEEEEeCCCcc-----------chhh
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMVTIDGRPIKLQIWDTAGQE-----------SFRS 70 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~l~D~~G~~-----------~~~~ 70 (211)
+..++|+|+|++|+|||||+|+|++..+.....+ +.+.........+++. .+.||||||.. .+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHHH
Confidence 4679999999999999999999999887665544 3344444444555654 57899999943 3334
Q ss_pred chHHHhccccEEEEEEECCCHHH--HHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC------HHHHHHHHHHcC
Q 028294 71 ITRSYYRGAAGALLVYDITRRET--FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS------KEEGEQFAKENG 142 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~------~~~~~~~~~~~~ 142 (211)
.....++.+|++|+|+|+++... ...+..+...+... ...|+++|+||+|+.....+. .+....+....+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 44555677899999999875322 22222222222221 246999999999986543322 135677777888
Q ss_pred CcEEEEeCCCC-----CCHHHHHHHHHHHHHH
Q 028294 143 LLFLEASARTA-----QNVEEAFIKTAAKILQ 169 (211)
Q Consensus 143 ~~~~~~s~~~~-----~~i~~~~~~i~~~~~~ 169 (211)
..++.++...+ .++.++++.+.+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 88888877643 5788888877776644
No 135
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=8e-22 Score=163.49 Aligned_cols=154 Identities=21% Similarity=0.174 Sum_probs=115.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc-chhh--------chHHH
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-SFRS--------ITRSY 75 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~-~~~~--------~~~~~ 75 (211)
.++|+|+|.+|+|||||+|+|++.... ....+.++.+.....+.+++. .+.+|||||.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 389999999999999999999987642 333444455565666777764 47899999987 5432 24567
Q ss_pred hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028294 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
+..+|++|+|+|++++.++.... ++..+ .+.|+++|+||+|+.+. ...++...++. .+.+++++||+++.|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G 391 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG 391 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence 88999999999999877665532 22322 27899999999999653 34455544432 346899999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKILQN 170 (211)
Q Consensus 156 i~~~~~~i~~~~~~~ 170 (211)
+++++++|.+.+...
T Consensus 392 i~eL~~~l~~~~~~~ 406 (482)
T 1xzp_A 392 LEKLEESIYRETQEI 406 (482)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999987643
No 136
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.87 E-value=2.6e-21 Score=163.64 Aligned_cols=162 Identities=22% Similarity=0.275 Sum_probs=115.1
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCC--CCCC-----C------CCCeeeEEEEE--EEEE---CCEEEEEEEEeC
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV-----H------DLTIGVEFGAR--MVTI---DGRPIKLQIWDT 62 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~~-----~------~~~~~~~~~~~--~~~~---~~~~~~l~l~D~ 62 (211)
|+.++..+|+++|+.++|||||+++|+... +... . ....|.++... .+.+ ++..+.++||||
T Consensus 1 ~~~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT 80 (600)
T 2ywe_A 1 MEQKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT 80 (600)
T ss_dssp CCGGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC
T ss_pred CCccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC
Confidence 666788999999999999999999998531 1110 0 00112222211 1112 455688999999
Q ss_pred CCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC
Q 028294 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG 142 (211)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~ 142 (211)
||+..|.......+..+|++|+|+|+++..+.+....|..... .+.|+++++||+|+.... ..+...++....+
T Consensus 81 PGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg 154 (600)
T 2ywe_A 81 PGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLG 154 (600)
T ss_dssp CCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSC
T ss_pred CCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhC
Confidence 9999999999999999999999999999877666666655443 389999999999996533 2233445555556
Q ss_pred C---cEEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 143 L---LFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 143 ~---~~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
+ +++++||++|.|++++++.|.+.+.
T Consensus 155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp 183 (600)
T 2ywe_A 155 LDPEEAILASAKEGIGIEEILEAIVNRIP 183 (600)
T ss_dssp CCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred CCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence 5 4899999999999999998887663
No 137
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=5.5e-21 Score=156.23 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=104.3
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCCC---CCCCCC--CeeeEEEEEEEEE-------------C--C----EEEE
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKRF---QPVHDL--TIGVEFGARMVTI-------------D--G----RPIK 56 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~ 56 (211)
|+....++|+++|+.++|||||+++|.+... ..+..+ |....+....+.. + + ....
T Consensus 3 ~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~ 82 (408)
T 1s0u_A 3 LGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRR 82 (408)
T ss_dssp --CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEE
T ss_pred cccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccE
Confidence 4456679999999999999999999985432 222222 3333333222211 1 1 1367
Q ss_pred EEEEeCCCccchhhchHHHhccccEEEEEEECCC----HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--CC
Q 028294 57 LQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VS 130 (211)
Q Consensus 57 l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~ 130 (211)
+.||||||++.+.......+..+|++|+|+|+++ +.+.+.+.. +.... ..|+++++||+|+.+... ..
T Consensus 83 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l~--~~~iivv~NK~Dl~~~~~~~~~ 156 (408)
T 1s0u_A 83 VSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEILG--IDKIIIVQNKIDLVDEKQAEEN 156 (408)
T ss_dssp EEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHTT--CCCEEEEEECTTSSCTTTTTTH
T ss_pred EEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHcC--CCeEEEEEEccCCCCHHHHHHH
Confidence 9999999999988877777888999999999985 344443332 22221 358999999999976443 23
Q ss_pred HHHHHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 131 KEEGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 131 ~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
.+++.+++.. .+++++++||++|.|++++++.|.+.+
T Consensus 157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 4555666554 367899999999999999999888755
No 138
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.87 E-value=2.6e-22 Score=160.44 Aligned_cols=118 Identities=18% Similarity=0.260 Sum_probs=98.3
Q ss_pred EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCC
Q 028294 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHA-NPNMSIMLVGNKCD 122 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 122 (211)
.+.+.+||++|++.++..|..+++.++++|+|||+++ ..++.....|+..+.... ..+.|+++++||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 5778999999999999999999999999999999999 456888888888776532 25799999999999
Q ss_pred CCCCC---------------CCCHHHHHHHHH-----------HcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028294 123 LAHRR---------------AVSKEEGEQFAK-----------ENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 123 l~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 171 (211)
+.+.+ ....+++..++. ..++.++++||+++.||+++|+++.+.+.+..
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 85321 356778888776 24567999999999999999999999887643
No 139
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.86 E-value=2e-21 Score=148.64 Aligned_cols=165 Identities=18% Similarity=0.118 Sum_probs=104.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEE--EEEEEEECCEEEEEEEEeCCCc--------cchhhchH
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEF--GARMVTIDGRPIKLQIWDTAGQ--------ESFRSITR 73 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~l~D~~G~--------~~~~~~~~ 73 (211)
...++|+|+|.+|+|||||+|+|++.........+.+.+. .......++ ..+.+|||||. +.+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 4679999999999999999999999887655444433332 233344454 45789999996 33333333
Q ss_pred HHh----ccccEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC------CHHHHHHHHHHcC
Q 028294 74 SYY----RGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV------SKEEGEQFAKENG 142 (211)
Q Consensus 74 ~~~----~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~------~~~~~~~~~~~~~ 142 (211)
.++ +.+|++|+|+|+..... ...+..++..+......+.|+++++||.|+.+.... ..+....+....+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 333 89999999999975211 112223333322221236899999999999653210 0133566777788
Q ss_pred CcEEEEeCCC-----CCCHHHHHHHHHHHHHHH
Q 028294 143 LLFLEASART-----AQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 143 ~~~~~~s~~~-----~~~i~~~~~~i~~~~~~~ 170 (211)
..++.++... +.+++++++.|.+.+.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 177 GRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 8887777655 478999998888777653
No 140
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.86 E-value=2.6e-21 Score=163.96 Aligned_cols=159 Identities=23% Similarity=0.265 Sum_probs=110.5
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCC--CC-----C------CCCCeeeEEEEEEEEE-----CCEEEEEEEEeCCCc
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRF--QP-----V------HDLTIGVEFGARMVTI-----DGRPIKLQIWDTAGQ 65 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~--~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~l~l~D~~G~ 65 (211)
++..+|+|+|+.++|||||+++|+.... .. . .....|.++......+ ++..+.++||||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 3568999999999999999999986321 10 0 0112234443333333 455688999999999
Q ss_pred cchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC--
Q 028294 66 ESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-- 143 (211)
Q Consensus 66 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-- 143 (211)
..+...+..++..+|++|+|+|+++....+....|..... .+.|+++++||+|+.+.. ..+...++....+.
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~ 155 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDA 155 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCc
Confidence 9999999999999999999999998766666666655443 378999999999997533 22334555555665
Q ss_pred -cEEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 144 -LFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 144 -~~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
.++++||++|.|++++++.|.+.+.
T Consensus 156 ~~vi~vSAktg~GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 156 TDAVRCSAKTGVGVQDVLERLVRDIP 181 (599)
T ss_dssp TTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred ceEEEeecccCCCchhHHHHHhhcCC
Confidence 4999999999999999988887653
No 141
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=1.2e-22 Score=167.40 Aligned_cols=153 Identities=18% Similarity=0.127 Sum_probs=99.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc--------chhhchHHHhc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE--------SFRSITRSYYR 77 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~--------~~~~~~~~~~~ 77 (211)
.++|+++|.+|||||||+|+|++...... ..+.|.+.......+......+.+|||||.+ .+...+..++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 36899999999999999999998776432 2233555444444454445578999999985 56667788899
Q ss_pred cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCCH
Q 028294 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQNV 156 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i 156 (211)
.+|++|+|+|+.++.+... .++..+.+ ..+.|+++++||+|+...... ...+. ..++ .++++||++|.|+
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv 152 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGL 152 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTH
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCCh
Confidence 9999999999988655433 33333222 248899999999998643211 11122 2454 6899999999999
Q ss_pred HHHHHHHHHHHH
Q 028294 157 EEAFIKTAAKIL 168 (211)
Q Consensus 157 ~~~~~~i~~~~~ 168 (211)
.++++.+.+.+.
T Consensus 153 ~~L~~~i~~~l~ 164 (436)
T 2hjg_A 153 GDLLDAVAEHFK 164 (436)
T ss_dssp HHHHHHHHHTGG
T ss_pred HHHHHHHHHhcC
Confidence 999999887764
No 142
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.86 E-value=1.1e-20 Score=151.74 Aligned_cols=160 Identities=24% Similarity=0.139 Sum_probs=108.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc---------hhhchHHHhcc
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES---------FRSITRSYYRG 78 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~---------~~~~~~~~~~~ 78 (211)
.|+++|++|+|||||+|+|.+........+..+.+.....+.+++. .+.+|||+|... +... ...+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHH-HHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHH-HHHHHh
Confidence 3999999999999999999988764433333344455566777774 568999999622 2222 235788
Q ss_pred ccEEEEEEECCCHH--HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC-CHHHHHHHHHHc---CCcEEEEeCCC
Q 028294 79 AAGALLVYDITRRE--TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKEN---GLLFLEASART 152 (211)
Q Consensus 79 ~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~s~~~ 152 (211)
+|++++|+|++++. ....+..|...+......+.|+++|.||+|+...... ..+.+..++... +.+++++|+++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~ 337 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK 337 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence 99999999999876 5566666666666554457899999999998653210 011232333444 33689999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 028294 153 AQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 153 ~~~i~~~~~~i~~~~~~~ 170 (211)
+.|++++++.|.+.+...
T Consensus 338 g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 338 RTNLELLRDKIYQLATQL 355 (364)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhccc
Confidence 999999999998876543
No 143
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.86 E-value=4.7e-21 Score=159.37 Aligned_cols=155 Identities=18% Similarity=0.160 Sum_probs=109.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCC-------CCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhc
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKR-------FQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR 77 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~ 77 (211)
..++|+++|+.++|||||+++|++.. +.....+..+.+.....+.+++ ..+.+|||||++.+.......+.
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence 57899999999999999999999776 1222222223333223344444 56889999999999998999999
Q ss_pred cccEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHHc----CCcEEEE
Q 028294 78 GAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKEN----GLLFLEA 148 (211)
Q Consensus 78 ~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~----~~~~~~~ 148 (211)
.+|++|+|+|+++ +.+.+.+. .+.. .+.|+++++||+|+.+... ...++...++... +.+++++
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred hCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 9999999999988 44433332 2222 2788899999999965221 1123344555544 5689999
Q ss_pred eCCCCCCHHHHHHHHHHHHH
Q 028294 149 SARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 149 s~~~~~~i~~~~~~i~~~~~ 168 (211)
||++|.|++++++.|.+.+.
T Consensus 169 SA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 169 SAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999988775
No 144
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=6.5e-22 Score=153.62 Aligned_cols=160 Identities=16% Similarity=0.225 Sum_probs=92.1
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC--------CCCeeeEEEEEEEEECCEEEEEEEEeCCCccc-------
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQES------- 67 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~------- 67 (211)
....++|+|+|.+|+|||||+|+|++....... .++.+.+.....+..++..+.+.+|||||...
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 346799999999999999999999876654432 34555555555555566667899999999732
Q ss_pred hhhch-------HHHhcc-------------ccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028294 68 FRSIT-------RSYYRG-------------AAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (211)
Q Consensus 68 ~~~~~-------~~~~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 127 (211)
+..+. ..++.. +|+++++++.........-..++..+.. +.|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 22222 334433 7789999977652211111233333332 79999999999985432
Q ss_pred CCC--HHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 128 AVS--KEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 128 ~~~--~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
+.. .+.+.+.....+++++.+|+.++.+++++++.|.+.
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 211 123444555678899999999999999988777654
No 145
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.85 E-value=8.2e-22 Score=155.47 Aligned_cols=118 Identities=16% Similarity=0.197 Sum_probs=96.0
Q ss_pred EEEEEEEeCCCccchhhchHHHhccccEEEEEEECC----------CHHHHHHHHHHHHHHHHhcC-CCCeEEEEEecCC
Q 028294 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHAN-PNMSIMLVGNKCD 122 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D 122 (211)
.+.+.+||++|++.++..|..+++.++++|+|||++ +..++.....|+..+..... .+.|+++++||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 477899999999999999999999999999999665 55667777777777654332 5899999999999
Q ss_pred CCCCC----------------CCCHHHHHHHHH----------HcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028294 123 LAHRR----------------AVSKEEGEQFAK----------ENGLLFLEASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 123 l~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 171 (211)
+.+.+ ....+++..++. ..++.++++||+++.||+.+|+.+.+.+++..
T Consensus 246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 85432 456777877743 34567899999999999999999999998754
No 146
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.85 E-value=2.7e-21 Score=148.99 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=104.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC-CCCCC-eeeEEEEEEEEECCEEEEEEEEeCCCccchhh-----------c
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLT-IGVEFGARMVTIDGRPIKLQIWDTAGQESFRS-----------I 71 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~-----------~ 71 (211)
..++|+|+|++|+|||||+++|++..... ...+. ++..........++ ..+.||||||...+.. .
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 56899999999999999999999887433 33332 34444444455555 4588999999765432 2
Q ss_pred hHHHhccccEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCeEEEEEe-cCCCCCCCCCCH-------HHHHHHHHHcC
Q 028294 72 TRSYYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGN-KCDLAHRRAVSK-------EEGEQFAKENG 142 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~-------~~~~~~~~~~~ 142 (211)
...+++.+|++|+|+|+++... ...+..++..+.... ...|.++++| |+|+... .... +++..+....+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~ 176 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACG 176 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhC
Confidence 2336788999999999986221 122222333221111 1356666666 9999743 1111 22334555554
Q ss_pred Cc---E--EEEeCCCCCCHHHHHHHHHHHHHHH
Q 028294 143 LL---F--LEASARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 143 ~~---~--~~~s~~~~~~i~~~~~~i~~~~~~~ 170 (211)
.. + +++||+++.|++++|+.|.+.+...
T Consensus 177 ~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~ 209 (260)
T 2xtp_A 177 GRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK 209 (260)
T ss_dssp TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence 33 2 7899999999999999999888653
No 147
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=3.9e-20 Score=152.50 Aligned_cols=160 Identities=21% Similarity=0.112 Sum_probs=106.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc------------
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI------------ 71 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~------------ 71 (211)
..++|+|+|++|||||||+|+|++.... ....+.++.+.....+.+++.. +.+|||||.......
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHHH
Confidence 4689999999999999999999987642 2222333444444556777764 679999997433221
Q ss_pred hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHH-H----HcCCcEE
Q 028294 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFA-K----ENGLLFL 146 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~-~----~~~~~~~ 146 (211)
...++..+|++++|+|+.+..+.... .+...+.. .+.|+++++||+|+.+......++..... . ..+.+++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI 332 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence 13467789999999999876554432 22222222 37999999999999765443444333222 2 2357899
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHH
Q 028294 147 EASARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 147 ~~s~~~~~~i~~~~~~i~~~~~~~ 170 (211)
++||++|.|++++|+.+.+.+.+.
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999998776543
No 148
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.85 E-value=8.3e-21 Score=155.27 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=109.3
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCC---CCCCCC--CeeeEEEEEEEEE-------------C--C----EEEEEE
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRF---QPVHDL--TIGVEFGARMVTI-------------D--G----RPIKLQ 58 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~l~ 58 (211)
....++|+++|+.++|||||+++|++... ..+..+ +....+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 45678999999999999999999995432 222222 3333333222211 1 1 136799
Q ss_pred EEeCCCccchhhchHHHhccccEEEEEEECCCH----HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--CCHH
Q 028294 59 IWDTAGQESFRSITRSYYRGAAGALLVYDITRR----ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKE 132 (211)
Q Consensus 59 l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~ 132 (211)
||||||++.+.......+..+|++|+|+|+++. .+.+.+.. +.... ..|+++++||+|+.+... ...+
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~~~~~~ 160 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKALENYR 160 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHHHHHHH
Confidence 999999999888888888899999999999853 34443332 22222 358999999999965321 1223
Q ss_pred HHHHHHHH---cCCcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 133 EGEQFAKE---NGLLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 133 ~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
++..++.. .+++++++||+++.|++++++.|.+.+
T Consensus 161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 34444443 357899999999999999998887655
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.85 E-value=3.3e-21 Score=160.62 Aligned_cols=153 Identities=15% Similarity=0.116 Sum_probs=101.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCeeeEEEEEEEEECCEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMVTIDGRPI 55 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (211)
..++|+++|++++|||||+++|+....... .....|.++......++....
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 468999999999999999999976521100 001123444444444555567
Q ss_pred EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHH------HHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028294 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNH------LSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~------~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 129 (211)
.+.||||||++.+......++..+|++|+|+|++++..+.. ....+...... ...|+++++||+|+.+..+.
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~ 189 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQ 189 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHH
Confidence 88999999999999999999999999999999998643321 12222222222 13569999999999764332
Q ss_pred CHHHHH----HHHHHc-----CCcEEEEeCCCCCCHHHH
Q 028294 130 SKEEGE----QFAKEN-----GLLFLEASARTAQNVEEA 159 (211)
Q Consensus 130 ~~~~~~----~~~~~~-----~~~~~~~s~~~~~~i~~~ 159 (211)
..++.. .+.... +++++++||++|.|++++
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 233332 333332 457999999999999853
No 150
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.85 E-value=5.1e-21 Score=152.90 Aligned_cols=120 Identities=16% Similarity=0.218 Sum_probs=94.2
Q ss_pred EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECC----------CHHHHHHHHHHHHHHHHhc-CCCCeEEEEEecC
Q 028294 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHA-NPNMSIMLVGNKC 121 (211)
Q Consensus 53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~ 121 (211)
..+.+.+|||+|++.++..+..+++.++++|+|||++ +..++.....|+..+.... ..+.|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5788999999999999999999999999999999998 7788888888888876543 2589999999999
Q ss_pred CCCCCCC--C-------------------CHHHHHHHHHH----------------cCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 122 DLAHRRA--V-------------------SKEEGEQFAKE----------------NGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 122 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
|+.+++. . ..+++..++.. ..+.++++||+++.||+++|+.+.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9843211 1 13555555432 123468999999999999999999
Q ss_pred HHHHHHHh
Q 028294 165 AKILQNIQ 172 (211)
Q Consensus 165 ~~~~~~~~ 172 (211)
+.+.+..-
T Consensus 341 ~~I~~~~l 348 (354)
T 2xtz_A 341 ETLRRRNL 348 (354)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876543
No 151
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.85 E-value=1.9e-21 Score=152.89 Aligned_cols=156 Identities=19% Similarity=0.121 Sum_probs=103.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCeeeEEEEEEEEECCEEEEEEEEeCCCcc-c--------hhhchHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE-S--------FRSITRS 74 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~-~--------~~~~~~~ 74 (211)
...+|+|+|++|+|||||+|+|++..+.... .+..+.......+..+ ..++.+|||||.. . +......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 3458999999999999999999988764321 2211211111122223 3568899999987 2 2334456
Q ss_pred HhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCC
Q 028294 75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTA 153 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 153 (211)
++..+|++++|+|+++ -+ ....|+.... ...+.|+++++||+|+........+....+....+. .++++||+++
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l--~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g 159 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WT--PDDEMVLNKL--REGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG 159 (301)
T ss_dssp CCCCEEEEEEEEETTC-CC--HHHHHHHHHH--HSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred HHhcCCEEEEEEeCCC-CC--HHHHHHHHHH--HhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence 6789999999999976 22 2222332222 224799999999999865222222344455555565 6999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028294 154 QNVEEAFIKTAAKI 167 (211)
Q Consensus 154 ~~i~~~~~~i~~~~ 167 (211)
.|++++++.|.+.+
T Consensus 160 ~~v~~l~~~i~~~l 173 (301)
T 1ega_A 160 LNVDTIAAIVRKHL 173 (301)
T ss_dssp TTHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHhC
Confidence 99999999887643
No 152
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.85 E-value=1.4e-21 Score=161.32 Aligned_cols=153 Identities=21% Similarity=0.197 Sum_probs=101.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchH--------HH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITR--------SY 75 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~--------~~ 75 (211)
..++|+++|++|+|||||+|+|++.... ....+.++.+.....+.+++.. +.+|||||...+..... .+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCccccchhHHHHHHHHHHhhh
Confidence 3578999999999999999999987543 2333444555544556677654 68999999766544333 35
Q ss_pred hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCC
Q 028294 76 YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQN 155 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 155 (211)
+..+|++++|+|++++.+... ..|+..+. +.|+++|+||+|+....... ....+. .+.+++++||++|.|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~G 370 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQG 370 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBS
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCC
Confidence 788999999999998755443 34444442 47999999999997644332 111111 356799999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKILQ 169 (211)
Q Consensus 156 i~~~~~~i~~~~~~ 169 (211)
++++++.|.+.+..
T Consensus 371 i~eL~~~i~~~~~~ 384 (462)
T 3geh_A 371 IDSLETAILEIVQT 384 (462)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887743
No 153
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=6.4e-22 Score=159.08 Aligned_cols=168 Identities=16% Similarity=0.278 Sum_probs=93.9
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-CC--------CCeeeEEEEEEEEECCEEEEEEEEeCCCc-------cc
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HD--------LTIGVEFGARMVTIDGRPIKLQIWDTAGQ-------ES 67 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~-------~~ 67 (211)
...++|+|+|++|+|||||+++|++...... +. ++.+.......+..++....+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 3568999999999999999999876543322 21 33333433333444566778999999998 66
Q ss_pred hhhchH-------HHhcccc-------------EEEEEEECCCHHHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCC
Q 028294 68 FRSITR-------SYYRGAA-------------GALLVYDITRRETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHR 126 (211)
Q Consensus 68 ~~~~~~-------~~~~~~d-------------~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~ 126 (211)
+..+.. .++..++ +++++++.. ..++..+. .|+..+ ..+.|+++|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 666655 5555443 344444431 23333333 233322 258999999999999764
Q ss_pred CCCCH--HHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcccc
Q 028294 127 RAVSK--EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQEGALD 177 (211)
Q Consensus 127 ~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~~~~ 177 (211)
..+.. +++..++...+++++++||+++.+ ++.|..+.+.+.+..+...+.
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~vv~ 241 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFSVVG 241 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCEECC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCCEeC
Confidence 43322 355566666788999999999999 889999999998877765443
No 154
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.84 E-value=5.7e-21 Score=140.44 Aligned_cols=115 Identities=22% Similarity=0.325 Sum_probs=88.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCC---CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhcc--
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPV---HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRG-- 78 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~-- 78 (211)
...++|+++|++|||||||+++|.+..+... ..++.+ .+.....+.+|||||.+.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 4678999999999999999999998876442 111211 12234568899999999988888877766
Q ss_pred --ccEEEEEEECC-CHHHHHHHHHHHHHHHHh----cCCCCeEEEEEecCCCCCCC
Q 028294 79 --AAGALLVYDIT-RRETFNHLSSWLEDARQH----ANPNMSIMLVGNKCDLAHRR 127 (211)
Q Consensus 79 --~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~----~~~~~p~ivv~nK~Dl~~~~ 127 (211)
+|++|+|||++ ++.++..+..|+..+... ...+.|+++|+||+|+.+..
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 89999999999 898998888888776544 23589999999999997644
No 155
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.84 E-value=1.1e-21 Score=162.42 Aligned_cols=153 Identities=17% Similarity=0.118 Sum_probs=101.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCC--------ccchhhchHHHh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAG--------QESFRSITRSYY 76 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G--------~~~~~~~~~~~~ 76 (211)
...+|+|+|.+|||||||+|+|++..+... ..+.+.+.......++.....+.+||||| ++.+......++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 357999999999999999999998776432 22335665555555665566789999999 667777888899
Q ss_pred ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCC-cEEEEeCCCCCC
Q 028294 77 RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGL-LFLEASARTAQN 155 (211)
Q Consensus 77 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 155 (211)
..+|++|+|+|..+..+. ...|+..+... .+.|+++|+||+|+.+.. .....+. ..+. .++++||++|.|
T Consensus 101 ~~ad~il~VvD~~~~~~~--~d~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTA--ADEEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHCSEEEEEEESSSCSCH--HHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTT
T ss_pred hhCCEEEEEEeCCCCCCh--HHHHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccc
Confidence 999999999998774332 22333333222 489999999999985422 1111111 1232 578999999999
Q ss_pred HHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKI 167 (211)
Q Consensus 156 i~~~~~~i~~~~ 167 (211)
+.++++.+.+.+
T Consensus 172 v~~L~~~i~~~l 183 (456)
T 4dcu_A 172 LGDLLDAVAEHF 183 (456)
T ss_dssp HHHHHHHHHTTG
T ss_pred hHHHHHHHHhhc
Confidence 999999887765
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.84 E-value=3.4e-20 Score=152.69 Aligned_cols=154 Identities=21% Similarity=0.168 Sum_probs=104.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCeeeEEEEEEEEECCEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMVTIDGRPI 55 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (211)
..++|+++|++++|||||+++|+....... .....|.+.......+.....
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~ 95 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK 95 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence 568999999999999999999965421100 001124444444444544556
Q ss_pred EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHH---HH---HHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCC-
Q 028294 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FN---HLSSWLEDARQHANPNMS-IMLVGNKCDLAHRR- 127 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~- 127 (211)
.+.||||||++.|.......+..+|++|+|+|+++... +. .....+..+.. .+.| +++++||+|+....
T Consensus 96 ~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~Dl~~~~~ 172 (439)
T 3j2k_7 96 HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMDDPTVNW 172 (439)
T ss_pred EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCCCcccch
Confidence 89999999999999999999999999999999988532 11 11222222222 2566 99999999985321
Q ss_pred -C----CCHHHHHHHHHHcC------CcEEEEeCCCCCCHHHHHH
Q 028294 128 -A----VSKEEGEQFAKENG------LLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 128 -~----~~~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~~~ 161 (211)
+ ...++...++...+ ++++++||++|.|++++++
T Consensus 173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 1 11223334444433 5699999999999999765
No 157
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.84 E-value=6.6e-21 Score=152.75 Aligned_cols=119 Identities=18% Similarity=0.227 Sum_probs=90.9
Q ss_pred EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCC----------HHHHHHHHHHHHHHHHhc-CCCCeEEEEEecCC
Q 028294 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQHA-NPNMSIMLVGNKCD 122 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D 122 (211)
.+.+.+|||+|++.++..|..+++.++++|||||+++ ..++.....|+..+.... ..+.|+++++||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 4678999999999999999999999999999999999 678888888888876542 25899999999999
Q ss_pred CCCCC----------------CCCHHHHHHHHH-----------HcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028294 123 LAHRR----------------AVSKEEGEQFAK-----------ENGLLFLEASARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 123 l~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 172 (211)
+.+++ ....+++..++. ..++.++++||+++.||+++|+.+.+.+.+..-
T Consensus 280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence 85321 256677777652 235678999999999999999999998876543
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.83 E-value=3.3e-21 Score=158.65 Aligned_cols=160 Identities=19% Similarity=0.226 Sum_probs=104.9
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhC--CCCCCC---------------------------CCCeeeEEEEEEEEEC
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVH---------------------------DLTIGVEFGARMVTID 51 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~ 51 (211)
|+....++|+++|+.++|||||+++|+.. .+.... ....+.+.......++
T Consensus 1 ~~~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~ 80 (435)
T 1jny_A 1 MSQKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE 80 (435)
T ss_dssp ---CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE
T ss_pred CCCCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe
Confidence 56667899999999999999999999864 222110 0011333333333444
Q ss_pred CEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHH----hcCCC-CeEEEEEecCCCCCC
Q 028294 52 GRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQ----HANPN-MSIMLVGNKCDLAHR 126 (211)
Q Consensus 52 ~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~----~~~~~-~p~ivv~nK~Dl~~~ 126 (211)
.....+.||||||++.+......++..+|++|+|+|+++ .+|+....|...... ....+ .|+++++||+|+.+.
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence 455679999999999999999999999999999999998 566643322211111 11124 468999999999652
Q ss_pred C--C----CCHHHHHHHHHHcC-----CcEEEEeCCCCCCHHHHHH
Q 028294 127 R--A----VSKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 127 ~--~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~~ 161 (211)
. + ...+++..++...+ ++++++||++|.|+.++++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 1 11344556666655 6799999999999986654
No 159
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.83 E-value=9.7e-23 Score=170.37 Aligned_cols=160 Identities=21% Similarity=0.210 Sum_probs=112.3
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
+..++|+++|++++|||||+++|.+..+.....+..+.++....+..++ ...+.||||||++.|...+..++..+|++|
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 3568999999999999999999997765544444444444333333321 235789999999999999999999999999
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC-CHHHHHHH---HHHc--CCcEEEEeCCCCCCHH
Q 028294 84 LVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQF---AKEN--GLLFLEASARTAQNVE 157 (211)
Q Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~---~~~~--~~~~~~~s~~~~~~i~ 157 (211)
+|+|+++....+.... +......+.|+++++||+|+.+.... ...+.... +..+ .++++++||++|.|++
T Consensus 81 LVVDa~dg~~~qt~e~----l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 81 LVVAADDGVMKQTVES----IQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp EECBSSSCCCHHHHHH----HHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEEECCCCccHHHHHH----HHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 9999998654333322 22233347899999999999643211 11112111 1111 2479999999999999
Q ss_pred HHHHHHHHHHH
Q 028294 158 EAFIKTAAKIL 168 (211)
Q Consensus 158 ~~~~~i~~~~~ 168 (211)
++++.|...+.
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999887653
No 160
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.83 E-value=9.1e-21 Score=152.68 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=107.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEE
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYD 87 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d 87 (211)
+|+++|++++|||||+++|+ ..+.+.......++.....+.||||||++.|.......+..+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999998 12333333334455445678999999999998888888999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCeE-EEEEe-cCCCCCCCCCC--HHHHHHHHHHc---CCcEEE--EeCCC---CCC
Q 028294 88 ITRRETFNHLSSWLEDARQHANPNMSI-MLVGN-KCDLAHRRAVS--KEEGEQFAKEN---GLLFLE--ASART---AQN 155 (211)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~Dl~~~~~~~--~~~~~~~~~~~---~~~~~~--~s~~~---~~~ 155 (211)
++ ..+.+...++..+... +.|. ++++| |+|+ +..... .++...++... .+++++ +||++ +.|
T Consensus 93 -~~-g~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g 166 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG 166 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred -CC-CCcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence 54 3344455555555443 6777 88899 9999 432111 13344444433 368999 99999 999
Q ss_pred HHHHHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKILQN 170 (211)
Q Consensus 156 i~~~~~~i~~~~~~~ 170 (211)
++++++.|.+.+...
T Consensus 167 i~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 167 VDELKARINEVAEKI 181 (370)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccc
Confidence 999999998877543
No 161
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.83 E-value=2.2e-20 Score=153.79 Aligned_cols=155 Identities=19% Similarity=0.139 Sum_probs=104.8
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCC--CC----------CCCC-------------------eeeEEEEEEEEECC
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ--PV----------HDLT-------------------IGVEFGARMVTIDG 52 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~--~~----------~~~~-------------------~~~~~~~~~~~~~~ 52 (211)
...++|+++|+.++|||||+++|++.... .. ...+ .|.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 35689999999999999999999865411 10 0011 12222222233344
Q ss_pred EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC---
Q 028294 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV--- 129 (211)
Q Consensus 53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~--- 129 (211)
....+.||||||++.+......++..+|++|+|+|+++... .....++..+.... ..|+++++||+|+.+..+.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~~~~ 178 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLG--IKHIVVAINKMDLNGFDERVFE 178 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCEEEEEEECTTTTTSCHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC--CCeEEEEEEcCcCCcccHHHHH
Confidence 45678999999999999888899999999999999988542 22334444333321 2469999999999753211
Q ss_pred -CHHHHHHHHHHcC-----CcEEEEeCCCCCCHHHHHH
Q 028294 130 -SKEEGEQFAKENG-----LLFLEASARTAQNVEEAFI 161 (211)
Q Consensus 130 -~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~~ 161 (211)
..++...++...+ ++++++||++|.|++++++
T Consensus 179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 1234555666666 5799999999999998544
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.83 E-value=5.5e-21 Score=156.12 Aligned_cols=148 Identities=17% Similarity=0.146 Sum_probs=104.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhC--------CCCCC--C-----CCCeeeEEEEEEEEECCEEEEEEEEeCCCccch
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDK--------RFQPV--H-----DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF 68 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~--------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~ 68 (211)
...++|+++|++++|||||+++|++. .+... . ....+.++......++.....+.||||||++.|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45789999999999999999999873 11110 0 012234444444555555567899999999999
Q ss_pred hhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCC---CHHHHHHHHHHcC--
Q 028294 69 RSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV---SKEEGEQFAKENG-- 142 (211)
Q Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~-- 142 (211)
.......+..+|++|+|+|+++... .....++..+... +.| +++++||+|+.+.... ..++...++...+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 164 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP 164 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence 9889999999999999999988643 3344555554443 678 8899999999642111 1124555666554
Q ss_pred ---CcEEEEeCCCCCC
Q 028294 143 ---LLFLEASARTAQN 155 (211)
Q Consensus 143 ---~~~~~~s~~~~~~ 155 (211)
++++++||++|.|
T Consensus 165 ~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 165 GDEVPVIRGSALLALE 180 (405)
T ss_dssp TTTSCEEECCHHHHHH
T ss_pred ccCCCEEEccHHHhhh
Confidence 6799999999977
No 163
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=1.1e-20 Score=149.51 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=96.6
Q ss_pred EECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECC----------CHHHHHHHHHHHHHHHHhcC-CCCeEEEE
Q 028294 49 TIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDIT----------RRETFNHLSSWLEDARQHAN-PNMSIMLV 117 (211)
Q Consensus 49 ~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~-~~~p~ivv 117 (211)
.+....+.+.+||++|++.++..|..+++.++++|+|||++ +..++.....|+..+..... .+.|++++
T Consensus 155 ~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv 234 (340)
T 4fid_A 155 DFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIF 234 (340)
T ss_dssp EEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEE
T ss_pred EEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEE
Confidence 33334578999999999999999999999999999999998 66778888888877765432 58999999
Q ss_pred EecCCCCCC---------------CCCCHHHHHHHHHH---------------------------cCCcEEEEeCCCCCC
Q 028294 118 GNKCDLAHR---------------RAVSKEEGEQFAKE---------------------------NGLLFLEASARTAQN 155 (211)
Q Consensus 118 ~nK~Dl~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~~s~~~~~~ 155 (211)
+||+|+.++ .....+++.+++.. ..+.++++||+++.+
T Consensus 235 ~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~n 314 (340)
T 4fid_A 235 LNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSN 314 (340)
T ss_dssp EECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHH
T ss_pred EECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHH
Confidence 999998431 11245666554433 236689999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028294 156 VEEAFIKTAAKILQ 169 (211)
Q Consensus 156 i~~~~~~i~~~~~~ 169 (211)
|+.+|+.+.+.+++
T Consensus 315 v~~vF~~v~~~Il~ 328 (340)
T 4fid_A 315 IKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999988
No 164
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.82 E-value=1.3e-20 Score=157.88 Aligned_cols=117 Identities=20% Similarity=0.182 Sum_probs=82.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCC---------------CCC-----CCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP---------------VHD-----LTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~---------------~~~-----~~~~~~~~~~~~~~~~~~~~l~l~D~~G 64 (211)
...+|+|+|++++|||||+++|+...... ... ...+.+.......+......+.||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 56899999999999999999997221100 000 0012222222223333346789999999
Q ss_pred ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
+..+......+++.+|++|+|+|+++.........| ..+.. .+.|+++|+||+|+..
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~---~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL---RHTPIMTFINKMDRDT 148 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT---TTCCEEEEEECTTSCC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEeCCCCcc
Confidence 999999999999999999999999987665555444 33332 3789999999999854
No 165
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.82 E-value=9.6e-20 Score=154.42 Aligned_cols=160 Identities=23% Similarity=0.186 Sum_probs=107.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC----CCeeeEEEEEEE------------EECCEEEEEEEEeCCCccch
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD----LTIGVEFGARMV------------TIDGRPIKLQIWDTAGQESF 68 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~l~l~D~~G~~~~ 68 (211)
..++|+++|++++|||||+++|++..+..... .+.+..+..... .++.....+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 46899999999999999999998765433221 122222211000 00011124889999999999
Q ss_pred hhchHHHhccccEEEEEEECCC---HHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC-------------CH-
Q 028294 69 RSITRSYYRGAAGALLVYDITR---RETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-------------SK- 131 (211)
Q Consensus 69 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-------------~~- 131 (211)
..++...+..+|++|+|+|+++ +.++..+.. +.. .+.|+++++||+|+...... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999888999999999999999 555554432 222 37999999999999642110 00
Q ss_pred --H-------HHHHHHHHcC---------------CcEEEEeCCCCCCHHHHHHHHHHHHHHHH
Q 028294 132 --E-------EGEQFAKENG---------------LLFLEASARTAQNVEEAFIKTAAKILQNI 171 (211)
Q Consensus 132 --~-------~~~~~~~~~~---------------~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 171 (211)
+ +......+.+ ++++++||++|.|+++++++|...+....
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~ 220 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL 220 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence 0 1111112222 37999999999999999999988776443
No 166
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.82 E-value=2.1e-20 Score=152.17 Aligned_cols=158 Identities=19% Similarity=0.155 Sum_probs=108.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCC-------CCCC-------CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKR-------FQPV-------HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSI 71 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~ 71 (211)
.++|+++|+.++|||||+++|++.. +... .....+.+.......++.....+.||||||++.|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 5899999999999999999998631 1100 0012244444444555555567899999999999888
Q ss_pred hHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCC---CCHHHHHHHHHHcC-----
Q 028294 72 TRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRA---VSKEEGEQFAKENG----- 142 (211)
Q Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~----- 142 (211)
....+..+|++|+|+|+++....+. ..++..+.. .+.| +++++||+|+.+... ...++...++...+
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~ 158 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE 158 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 8889999999999999998543222 233333333 2678 689999999964211 11234555666655
Q ss_pred CcEEEEeCCCCCC----------HHHHHHHHHHHH
Q 028294 143 LLFLEASARTAQN----------VEEAFIKTAAKI 167 (211)
Q Consensus 143 ~~~~~~s~~~~~~----------i~~~~~~i~~~~ 167 (211)
++++++||++|.+ +.++++.|.+.+
T Consensus 159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 5899999999764 666666665543
No 167
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.81 E-value=7.4e-21 Score=157.75 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=90.1
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCC--CCC----------------------CC-----CCCeeeEEEEEEEEECCEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--FQP----------------------VH-----DLTIGVEFGARMVTIDGRP 54 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~----------------------~~-----~~~~~~~~~~~~~~~~~~~ 54 (211)
...++|+++|+.++|||||+++|+... +.. .. ....+.++......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 456899999999999999999997521 110 00 0011222222222222234
Q ss_pred EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHH---HHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCC--C
Q 028294 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRR--A 128 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~--~ 128 (211)
..+.||||||++.|.......+..+|++|+|+|+++.. +|....+|+..+......+.| ++|++||+|+.... +
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 57899999999999999999999999999999999863 222222232222222223677 99999999995421 0
Q ss_pred ----CCHHHHHHHHHHc-------CCcEEEEeCCCCCCHHHHH
Q 028294 129 ----VSKEEGEQFAKEN-------GLLFLEASARTAQNVEEAF 160 (211)
Q Consensus 129 ----~~~~~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~ 160 (211)
...++...++... +++++++||++|.|+.+++
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1122355555555 3569999999999998866
No 168
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.80 E-value=3.4e-20 Score=145.40 Aligned_cols=161 Identities=16% Similarity=0.146 Sum_probs=102.1
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----Ceee----------------------EEE-------------
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL----TIGV----------------------EFG------------- 44 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~----~~~~----------------------~~~------------- 44 (211)
...++|+|+|.+|+|||||+|+|++..+.+.... ..+. +..
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999887432211 0110 000
Q ss_pred ----------EEEEEECC-EEEEEEEEeCCCcc-------------chhhchHHHhccccEEE-EEEECCCHHHHHHHHH
Q 028294 45 ----------ARMVTIDG-RPIKLQIWDTAGQE-------------SFRSITRSYYRGAAGAL-LVYDITRRETFNHLSS 99 (211)
Q Consensus 45 ----------~~~~~~~~-~~~~l~l~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~~~ 99 (211)
...+.+.+ ....+.||||||.. .+......++..++.+| +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 00000000 02468999999964 34456777888888766 7999987544333223
Q ss_pred HHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH--cC-CcEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 100 WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE--NG-LLFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 100 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
+...+ ...+.|+++|+||+|+.+......+........ .+ .+++++||+++.|++++++.|.+..
T Consensus 184 ~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 184 IAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 33333 234789999999999976443222322211001 12 3578999999999999999988744
No 169
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.80 E-value=2.3e-19 Score=133.59 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=98.5
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc----------hhhch
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES----------FRSIT 72 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~----------~~~~~ 72 (211)
.....+|+++|++|||||||+|+|++..+.....++.|.+.....+.+++ .+.+||+||... +....
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 34567899999999999999999998764444444555554444444433 467999999742 22223
Q ss_pred HHHh---ccccEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHHcC--C
Q 028294 73 RSYY---RGAAGALLVYDITRRETFNH--LSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKENG--L 143 (211)
Q Consensus 73 ~~~~---~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~ 143 (211)
..++ ..++++++++|+.++.+... +..|+ .. .+.|++++.||+|+....+ ...+.+..++...+ +
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~ 173 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV 173 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence 3344 46889999999988644322 22222 11 3789999999999854321 11234445554444 4
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 144 LFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 144 ~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
.++++|++++.+++++++.|.+.+
T Consensus 174 ~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 174 QVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCHHHHHHHHHHHH
Confidence 688999999999999999888765
No 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.6e-20 Score=159.96 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=101.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-----------------------------CCeeeEEEEEEEEECCEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-----------------------------LTIGVEFGARMVTIDGRPI 55 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 55 (211)
..++|+++|++++|||||+++|++........ ...|+++......+.....
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 46899999999999999999998663321110 0013333333333444456
Q ss_pred EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHH---HHHHHHHHHHHHHhcCCC-CeEEEEEecCCCCCCCCCCH
Q 028294 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRET---FNHLSSWLEDARQHANPN-MSIMLVGNKCDLAHRRAVSK 131 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~-~p~ivv~nK~Dl~~~~~~~~ 131 (211)
.+.||||||++.+.......+..+|++|+|+|+++... +.....+...+......+ .|++||+||+|+.+......
T Consensus 246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~~ 325 (611)
T 3izq_1 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRF 325 (611)
T ss_dssp EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHHH
T ss_pred eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHHH
Confidence 78999999999999999999999999999999987521 000111222222111224 45999999999975322222
Q ss_pred H----HHHHHHHHc-----CCcEEEEeCCCCCCHHHH
Q 028294 132 E----EGEQFAKEN-----GLLFLEASARTAQNVEEA 159 (211)
Q Consensus 132 ~----~~~~~~~~~-----~~~~~~~s~~~~~~i~~~ 159 (211)
+ +...++... +++++++||++|.|+.++
T Consensus 326 ~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 326 EEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 2 233344433 357999999999999876
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.79 E-value=1.9e-19 Score=159.75 Aligned_cols=160 Identities=18% Similarity=0.148 Sum_probs=107.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCC-------CCC-------CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR-------FQP-------VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR 69 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~ 69 (211)
...++|+++|+.++|||||+++|++.. +.. ......|.++....+.++.....+.||||||++.|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 356899999999999999999998631 000 111233444444444555556678999999999999
Q ss_pred hchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCCC---CHHHHHHHHHHcC---
Q 028294 70 SITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRAV---SKEEGEQFAKENG--- 142 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~~---~~~~~~~~~~~~~--- 142 (211)
......+..+|++|+|+|+++.... +...++..+... +.| ++|++||+|+.+.... ..+++..++...+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~ 449 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG 449 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence 8888899999999999999885322 233444444433 678 7899999999752211 1234556666655
Q ss_pred --CcEEEEeCCCC--------CCHHHHHHHHHHHH
Q 028294 143 --LLFLEASARTA--------QNVEEAFIKTAAKI 167 (211)
Q Consensus 143 --~~~~~~s~~~~--------~~i~~~~~~i~~~~ 167 (211)
++++++||++| .|+.++++.|.+.+
T Consensus 450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred cceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 57999999999 34666666655433
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.79 E-value=3.3e-19 Score=147.54 Aligned_cols=156 Identities=19% Similarity=0.186 Sum_probs=102.9
Q ss_pred CCC-CceeeEEEEcCCCCCHHHHHHHHHhC--CCCCC---------------C-------C-----CCeeeEEEEEEEEE
Q 028294 1 MSY-DYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPV---------------H-------D-----LTIGVEFGARMVTI 50 (211)
Q Consensus 1 m~~-~~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~---------------~-------~-----~~~~~~~~~~~~~~ 50 (211)
|.. ...++|+++|++++|||||+++|++. .+... . . ...|.+.......+
T Consensus 1 M~~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~ 80 (458)
T 1f60_A 1 MGKEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF 80 (458)
T ss_dssp -CCCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE
T ss_pred CCCCCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE
Confidence 553 35689999999999999999999864 11110 0 0 00122222222334
Q ss_pred CCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHH---HHH---HHHHHHHHHHHhcCCCCe-EEEEEecCCC
Q 028294 51 DGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TFN---HLSSWLEDARQHANPNMS-IMLVGNKCDL 123 (211)
Q Consensus 51 ~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl 123 (211)
+.....+.||||||++.|.......+..+|++|+|+|+++.. +|. ....++..... .+.| +++++||+|+
T Consensus 81 ~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl 157 (458)
T 1f60_A 81 ETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDS 157 (458)
T ss_dssp ECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGG
T ss_pred ecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEcccc
Confidence 444567999999999999999999999999999999998763 121 22222222222 2555 8999999999
Q ss_pred CCCCCC----CHHHHHHHHHHcC-----CcEEEEeCCCCCCHHHH
Q 028294 124 AHRRAV----SKEEGEQFAKENG-----LLFLEASARTAQNVEEA 159 (211)
Q Consensus 124 ~~~~~~----~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~ 159 (211)
.+.... ..++...++...+ ++++++||++|.|+.+.
T Consensus 158 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 158 VKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 732111 1233445555554 67999999999999754
No 173
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.78 E-value=3.9e-18 Score=131.46 Aligned_cols=125 Identities=17% Similarity=0.137 Sum_probs=86.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-CCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhc------
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYR------ 77 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~------ 77 (211)
..++|+++|.+|+|||||+|+|++...... ..+..+.......+..++. .+.||||||++.+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 579999999999999999999998875332 2222233333334455554 6889999999887765555543
Q ss_pred ---cccEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCC--CeEEEEEecCCCCCCCCCCHH
Q 028294 78 ---GAAGALLVYDITRRETFNH-LSSWLEDARQHANPN--MSIMLVGNKCDLAHRRAVSKE 132 (211)
Q Consensus 78 ---~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~~~~~~~~ 132 (211)
.+|++++|++++... +.. ...|+..+......+ .|+++++||+|+........+
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e 172 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYE 172 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHH
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHH
Confidence 789999999987644 322 235666666554322 499999999999654444433
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.78 E-value=5.5e-21 Score=158.57 Aligned_cols=153 Identities=19% Similarity=0.209 Sum_probs=104.1
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 83 (211)
...++|+++|+.++|||||+++|....+.....+..+.+.....+..++ ..+.||||||++.|..++...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3568999999999999999999987654433322222222222222233 45789999999999999988999999999
Q ss_pred EEEECCCH---HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC--CCCHHH--HHHHHHHc--CCcEEEEeCCCCC
Q 028294 84 LVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR--AVSKEE--GEQFAKEN--GLLFLEASARTAQ 154 (211)
Q Consensus 84 ~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~--~~~~~~~~--~~~~~~~s~~~~~ 154 (211)
+|+|+++. .+.+.+ ..... .+.|+++++||+|+.+.. .+..+. ...++... .++++++||++|.
T Consensus 80 LVVda~~g~~~qT~e~l----~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~ 152 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI----QHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT 152 (501)
T ss_dssp EEEETTTBSCTTTHHHH----HHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred EEeecccCccHHHHHHH----HHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence 99999883 333222 22222 378999999999996421 111000 00011112 2689999999999
Q ss_pred CHHHHHHHHHH
Q 028294 155 NVEEAFIKTAA 165 (211)
Q Consensus 155 ~i~~~~~~i~~ 165 (211)
|++++++.|..
T Consensus 153 gI~eLle~I~~ 163 (501)
T 1zo1_I 153 GIDELLDAILL 163 (501)
T ss_dssp TCTTHHHHTTT
T ss_pred Ccchhhhhhhh
Confidence 99999998764
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.77 E-value=3e-18 Score=147.50 Aligned_cols=117 Identities=16% Similarity=0.113 Sum_probs=83.4
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----------------CeeeEEEEEEEEECCEEEEEEEEeCCCccc
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL----------------TIGVEFGARMVTIDGRPIKLQIWDTAGQES 67 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 67 (211)
+...+|+|+|+.|+|||||+++|++......... ..+.++......+....+.++||||||++.
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 4567999999999999999999985432211000 012233333333433457789999999999
Q ss_pred hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028294 68 FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 68 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 124 (211)
+......++..+|++++|+|+.+..... ...++..+.. .+.|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence 9998999999999999999988754332 2344444443 379999999999986
No 176
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.77 E-value=3.8e-18 Score=138.89 Aligned_cols=161 Identities=16% Similarity=0.107 Sum_probs=109.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch----hhchHHH---hccc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF----RSITRSY---YRGA 79 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~----~~~~~~~---~~~~ 79 (211)
..|+|+|++|||||||+++|.+........+..+.......+.+++ ...+.+||+||.... ..+...+ +..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3589999999999999999997743222222222222233344443 245789999997431 1222222 4568
Q ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Q 028294 80 AGALLVYDITRRETFNHLSSWLEDARQHAN--PNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVE 157 (211)
Q Consensus 80 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 157 (211)
+.+++++|++ ...+..+..|...+..+.. ...|.++++||+|+... ...++........+.+++.+||+++.|++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 9999999997 4456667777666655431 26899999999998653 22344445555567899999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 028294 158 EAFIKTAAKILQNI 171 (211)
Q Consensus 158 ~~~~~i~~~~~~~~ 171 (211)
++++.|.+.+.+..
T Consensus 314 eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 314 ALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999886543
No 177
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.76 E-value=4e-18 Score=131.96 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=82.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHH-------H--
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRS-------Y-- 75 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~-------~-- 75 (211)
..++|+++|.+|+|||||+|+|++..+...... .+.+.......++.....+.+|||||...+...... +
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPF-QSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS-SCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 478999999999999999999998876432211 122222222333333456899999998776543221 1
Q ss_pred hccccEEEEEEECCCHHHHHH-HHHHHHHHHHhcCCC--CeEEEEEecCCCCCCCCCCHH
Q 028294 76 YRGAAGALLVYDITRRETFNH-LSSWLEDARQHANPN--MSIMLVGNKCDLAHRRAVSKE 132 (211)
Q Consensus 76 ~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~Dl~~~~~~~~~ 132 (211)
...+|++|+|+|++.. ++.. ...|+..+......+ .|+++|+||+|+........+
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~ 175 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYD 175 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHH
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHH
Confidence 2468999999998653 2322 235666665544322 699999999999655443433
No 178
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=6.7e-19 Score=141.69 Aligned_cols=158 Identities=17% Similarity=0.172 Sum_probs=105.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeE---EEE------------------------------------
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE---FGA------------------------------------ 45 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~~~------------------------------------ 45 (211)
..++|+|+|++|||||||+|+|++..+.+.....++.. ...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 45699999999999999999999987744433222100 000
Q ss_pred -------------EEEEE-CCEEEEEEEEeCCCccch-------------hhchHHHhccccEEEEEEECCCHHHHHHHH
Q 028294 46 -------------RMVTI-DGRPIKLQIWDTAGQESF-------------RSITRSYYRGAAGALLVYDITRRETFNHLS 98 (211)
Q Consensus 46 -------------~~~~~-~~~~~~l~l~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~ 98 (211)
..+.+ ......+.+|||||...+ ..+...++..+|++|+|++..+..... .
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 00000 001224789999997765 557778899999999999875432211 3
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Q 028294 99 SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 99 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
.|+..+......+.|+++|+||+|+.+......+.........+.+|+.++++.+.++++.+..+.
T Consensus 191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 444445555555789999999999976554444444444444677899999999888777655433
No 179
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.76 E-value=6e-18 Score=146.23 Aligned_cols=162 Identities=14% Similarity=0.173 Sum_probs=106.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC-CCCee----e--------EEE---------------------------
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH-DLTIG----V--------EFG--------------------------- 44 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~-~~~~~----~--------~~~--------------------------- 44 (211)
..++|+|+|.+|+|||||+|+|++....+.. .+++. . +..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4689999999999999999999988765432 22221 0 000
Q ss_pred --------------EEEEEECCEE--EEEEEEeCCCccc---hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHH
Q 028294 45 --------------ARMVTIDGRP--IKLQIWDTAGQES---FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDAR 105 (211)
Q Consensus 45 --------------~~~~~~~~~~--~~l~l~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 105 (211)
...+..+... ..+.||||||... .......++..+|++|+|+|++++.+......|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0000111100 2478999999654 33456678899999999999998877666555544433
Q ss_pred HhcCCCCeEEEEEecCCCCCCCCCCHH---H-------HHHH----H-HHc--------CCcEEEEeCC-----------
Q 028294 106 QHANPNMSIMLVGNKCDLAHRRAVSKE---E-------GEQF----A-KEN--------GLLFLEASAR----------- 151 (211)
Q Consensus 106 ~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~-------~~~~----~-~~~--------~~~~~~~s~~----------- 151 (211)
. .+.|+++|+||+|+........+ + .... . ... ..+++++||+
T Consensus 228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 2 36789999999998643211110 1 1111 1 111 2369999999
Q ss_pred ---CCCCHHHHHHHHHHHHHH
Q 028294 152 ---TAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 152 ---~~~~i~~~~~~i~~~~~~ 169 (211)
++.|++++++.|.+.+..
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHH
Confidence 999999999998887654
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.76 E-value=1e-17 Score=140.50 Aligned_cols=117 Identities=16% Similarity=0.130 Sum_probs=79.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------CCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV--------------------HDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G 64 (211)
...+|+++|++++|||||+++|+....... .....+.++......++.....+.||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 578999999999999999999996421110 001122222222233333446789999999
Q ss_pred ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
+..+......++..+|++|+|+|+.+..... ...++..+ ...+.|+++++||+|+..
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence 9999888889999999999999998854322 22222222 224899999999999854
No 181
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.75 E-value=6.6e-18 Score=145.90 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=82.4
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCC--CCCC--------C------CCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV--------H------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~~--------~------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (211)
.+...+|+|+|+.|+|||||+++|+... +... . ....+.+.......+......+.||||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 3568899999999999999999998421 1000 0 0011222222222222224678999999999
Q ss_pred chhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 67 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
.+...+..++..+|++|+|+|+++.........|.. +.. .+.|+++++||+|+..
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 999999999999999999999998776666555543 333 3899999999999854
No 182
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.74 E-value=5.1e-19 Score=138.92 Aligned_cols=165 Identities=16% Similarity=0.232 Sum_probs=88.0
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhC-CCCCCCC--------CCeeeEEEEEEEEECCEEEEEEEEeCCCc-------cc
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDK-RFQPVHD--------LTIGVEFGARMVTIDGRPIKLQIWDTAGQ-------ES 67 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~-------~~ 67 (211)
+..++|+|+|++|+|||||+++|.+. .+..... ++............++....+.+||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 35689999999999999999998875 3332221 11111111111222344568899999997 44
Q ss_pred hhhchH-------HHhccc-------------cEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028294 68 FRSITR-------SYYRGA-------------AGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (211)
Q Consensus 68 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 127 (211)
+..+.. .++... ++++++.+.+.. ++..+. ...+.... .+.|+++|+||.|+....
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l~-~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAIH-NKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHHT-TTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHHH-hcCCEEEEEEeCCCCCHH
Confidence 454443 444333 335555554221 122222 12233332 367999999999996543
Q ss_pred CC--CHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHHhh
Q 028294 128 AV--SKEEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAKILQNIQE 173 (211)
Q Consensus 128 ~~--~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~ 173 (211)
+. ..+++.+++...+++++++||+++ +++++|..+.+.+.+..+.
T Consensus 172 e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~ 218 (301)
T 2qnr_A 172 ERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPF 218 (301)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCc
Confidence 32 235677788889999999999999 9999999999988765543
No 183
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.74 E-value=5.5e-20 Score=156.22 Aligned_cols=150 Identities=22% Similarity=0.185 Sum_probs=80.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCC-----------------------------CCCCeeeEEEEEEEEECCEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPV-----------------------------HDLTIGVEFGARMVTIDGRPI 55 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (211)
..++|+++|++++|||||+++|+....... .....|++.......+.....
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~ 255 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKK 255 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCe
Confidence 568999999999999999999964210000 000123444444444444557
Q ss_pred EEEEEeCCCccchhhchHHHhccccEEEEEEECCCHH---HH---HHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCCCC
Q 028294 56 KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE---TF---NHLSSWLEDARQHANPNMS-IMLVGNKCDLAHRRA 128 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~~~ 128 (211)
.+.||||||++.|.......+..+|++|+|+|++++. .+ ......+..+... +.| ++|++||+|+.+...
T Consensus 256 ~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl~~~~~ 332 (592)
T 3mca_A 256 IYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDLMSWSE 332 (592)
T ss_dssp ---CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGGGTTCH
T ss_pred EEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEeccccccccH
Confidence 7899999999999998888999999999999998532 11 1111222222222 565 999999999965221
Q ss_pred CCH----HHHHHHH-HHcCC-----cEEEEeCCCCCCHH
Q 028294 129 VSK----EEGEQFA-KENGL-----LFLEASARTAQNVE 157 (211)
Q Consensus 129 ~~~----~~~~~~~-~~~~~-----~~~~~s~~~~~~i~ 157 (211)
... ++...+. ...++ +++++||++|.|+.
T Consensus 333 ~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 333 DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 111 2233333 33344 69999999999998
No 184
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.73 E-value=1.5e-17 Score=131.31 Aligned_cols=161 Identities=14% Similarity=0.131 Sum_probs=95.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC----CeeeEEEEE----------------------------------
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL----TIGVEFGAR---------------------------------- 46 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~----~~~~~~~~~---------------------------------- 46 (211)
..++|+|+|.+|+|||||+|+|++..+.+.... ..+......
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 467999999999999999999999876332211 000000000
Q ss_pred -------------------EEE-ECCEEEEEEEEeCCCccc-------------hhhchHHHhccccEEEEEEECCCHH-
Q 028294 47 -------------------MVT-IDGRPIKLQIWDTAGQES-------------FRSITRSYYRGAAGALLVYDITRRE- 92 (211)
Q Consensus 47 -------------------~~~-~~~~~~~l~l~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~- 92 (211)
.+. .......+.||||||... +......++..+|++|+|+|..+..
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 000 001123588999999753 4456777889999999999974322
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCCC------CCCHHHHHHHHHHH
Q 028294 93 TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASART------AQNVEEAFIKTAAK 166 (211)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~i~~~~~~i~~~ 166 (211)
.......+... ....+.|+++|+||+|+........+.........+..++++++.. +.|+.++++.+.+.
T Consensus 183 ~~~~~~~i~~~---~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~ 259 (315)
T 1jwy_B 183 ANSDALQLAKE---VDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILY 259 (315)
T ss_dssp TTCSHHHHHHH---HCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHH---hCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHH
Confidence 10111122222 2234789999999999976543223332211111225566666654 67888888777666
Q ss_pred HH
Q 028294 167 IL 168 (211)
Q Consensus 167 ~~ 168 (211)
+.
T Consensus 260 ~~ 261 (315)
T 1jwy_B 260 FK 261 (315)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 185
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.72 E-value=1.8e-16 Score=137.17 Aligned_cols=118 Identities=17% Similarity=0.140 Sum_probs=82.7
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCC--CCCC-----------CC---CCeeeEEEEEE--EEEC-----CEEEEEEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--FQPV-----------HD---LTIGVEFGARM--VTID-----GRPIKLQIW 60 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~--~~~~-----------~~---~~~~~~~~~~~--~~~~-----~~~~~l~l~ 60 (211)
+...+|+|+|+.++|||||+++|+... +... .. ...+.+..... +.++ +..+.+.||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 567899999999999999999997531 1110 00 01122332222 2222 233789999
Q ss_pred eCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 61 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
||||+..|...+..+++.+|++|+|+|+++.........| ..... .+.|+++++||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~---~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK---YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH---cCCCEEEEEeCCCccc
Confidence 9999999998899999999999999999987554444334 33222 3799999999999854
No 186
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.72 E-value=4.2e-17 Score=140.96 Aligned_cols=117 Identities=18% Similarity=0.181 Sum_probs=82.1
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhC--CCCCCC---CC-----------CeeeEEE--EEEEEECCEEEEEEEEeCCC
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDK--RFQPVH---DL-----------TIGVEFG--ARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~--~~~~~~---~~-----------~~~~~~~--~~~~~~~~~~~~l~l~D~~G 64 (211)
.+...+|+|+|++|+|||||+++|+.. .+.... .. ..+.+.. ...+..+ ...+.||||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcC
Confidence 356789999999999999999999852 221000 00 0111221 2223333 46789999999
Q ss_pred ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
+..+......+++.+|++|+|+|+++..+......|. .+.. .+.|+++++||+|+..
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTT
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccc
Confidence 9999988999999999999999999876665554443 3333 3789999999999864
No 187
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.72 E-value=6.1e-17 Score=130.87 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=101.7
Q ss_pred CeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCC----------HHHHHHHHHHHHHHHHh
Q 028294 38 TIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR----------RETFNHLSSWLEDARQH 107 (211)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~ 107 (211)
|+|... ..+.+++ +.+.+|||+|++.++..|..+++.++++|+|||+++ ..++.....|+..+...
T Consensus 204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 344443 3455554 779999999999999999999999999999999999 88899999999888765
Q ss_pred c-CCCCeEEEEEecCCCCCCCC---C---------------------------CHHHHHHHH-----HH--------cCC
Q 028294 108 A-NPNMSIMLVGNKCDLAHRRA---V---------------------------SKEEGEQFA-----KE--------NGL 143 (211)
Q Consensus 108 ~-~~~~p~ivv~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~ 143 (211)
. ..+.|+++|+||+|+.+.+. . ..+++..++ .. ..+
T Consensus 280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~ 359 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC 359 (402)
T ss_dssp TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence 3 36899999999999843221 1 134555553 22 245
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Q 028294 144 LFLEASARTAQNVEEAFIKTAAKILQNIQ 172 (211)
Q Consensus 144 ~~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 172 (211)
.++++||+++.||+++|..+.+.+++...
T Consensus 360 ~~~~TSA~d~~nV~~vF~~v~~~I~~~~l 388 (402)
T 1azs_C 360 YPHFTCAVDTENIRRVFNDCRDIIQRMHL 388 (402)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCcCHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999888876654
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=9.1e-18 Score=136.73 Aligned_cols=158 Identities=16% Similarity=0.233 Sum_probs=79.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCC--------CCCeeeEEEEEEEEECCEEEEEEEEeCCCccchh-------
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVH--------DLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFR------- 69 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~------- 69 (211)
..++|+|+|++|+|||||+++|++..+.... .++.+.......+..++....+.+||++|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 4578999999999999999999987663221 1121211111111223334578999999976431
Q ss_pred h------------------chHHHhccccEEEEEEECCCH-HHHHHHH-HHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028294 70 S------------------ITRSYYRGAAGALLVYDITRR-ETFNHLS-SWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 70 ~------------------~~~~~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 129 (211)
. +...++..+++.+++|+.... .++.... .|+..+. .+.|+|+|+||+|+....++
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHH
Confidence 1 112233445544444444322 2233332 4555443 37999999999998654443
Q ss_pred CH--HHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 130 SK--EEGEQFAKENGLLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 130 ~~--~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
.. +.+...+..++++++++|+.++.++.++|..+.+.
T Consensus 186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~ 224 (418)
T 2qag_C 186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 224 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence 32 55667777889999999999999998877666543
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.71 E-value=1e-17 Score=136.03 Aligned_cols=85 Identities=21% Similarity=0.210 Sum_probs=47.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEE--E-------------------EECC-EEEEEEEEeCCC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARM--V-------------------TIDG-RPIKLQIWDTAG 64 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~l~l~D~~G 64 (211)
++|+++|.+|||||||+|+|++........+.++.+..... + .+++ ..+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987733222222222111111 1 1232 246799999999
Q ss_pred ccch----hhchH---HHhccccEEEEEEECCCH
Q 028294 65 QESF----RSITR---SYYRGAAGALLVYDITRR 91 (211)
Q Consensus 65 ~~~~----~~~~~---~~~~~~d~~i~v~d~~~~ 91 (211)
.... ..+.. ..++.+|++++|+|+.+.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 7532 22222 346899999999999874
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=5.4e-18 Score=133.14 Aligned_cols=133 Identities=16% Similarity=0.119 Sum_probs=107.3
Q ss_pred HHHHHHHhCCCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHH-HHHHHH
Q 028294 21 CLLLQFTDKRFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRE-TFNHLS 98 (211)
Q Consensus 21 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~ 98 (211)
+|+++++.+.|. ..+.+++|..+.. .+..++ .+.+||+ ++++..++..+++++|++|+|||++++. ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~-~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEY-TPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEE-ECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEE-EEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577888888887 7888898866543 222222 6789999 8999999999999999999999999987 688888
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcC--CcEEEEeCCCCCCHHHHHHHHH
Q 028294 99 SWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENG--LLFLEASARTAQNVEEAFIKTA 164 (211)
Q Consensus 99 ~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~i~ 164 (211)
.|+..+.. .+.|+++|+||+|+.+... .++...++...+ ++++++||++|.|++++|+.+.
T Consensus 106 ~~l~~~~~---~~~piilv~NK~DL~~~~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH---CCCCEEEEEeHHHcCCchh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 99887755 3799999999999965432 244666666666 8999999999999999998764
No 191
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.66 E-value=2.9e-15 Score=119.59 Aligned_cols=145 Identities=16% Similarity=0.145 Sum_probs=90.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCccchh--
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQESFR-- 69 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~-- 69 (211)
++|+++|.+|+|||||+|+|++..+.....+.++.......+.+++. ...+.+||+||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987743322222222222223344442 2468999999987643
Q ss_pred --h---chHHHhccccEEEEEEECCCH----------HHHHHHHHHHHH-------------------------------
Q 028294 70 --S---ITRSYYRGAAGALLVYDITRR----------ETFNHLSSWLED------------------------------- 103 (211)
Q Consensus 70 --~---~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~------------------------------- 103 (211)
. .....++.+|++++|+|+.+. +.+..+..+..+
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 1 233457899999999999752 122222111111
Q ss_pred ---------HH-------------------Hh-cCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeCC
Q 028294 104 ---------AR-------------------QH-ANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASAR 151 (211)
Q Consensus 104 ---------~~-------------------~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 151 (211)
+. .+ ....+|+++++|+.|.........+.+..++...+.+++++||+
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~ 239 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA 239 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechH
Confidence 10 01 11359999999999964322223456677887889999999965
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.65 E-value=9.5e-17 Score=120.37 Aligned_cols=155 Identities=15% Similarity=0.099 Sum_probs=94.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEE------------EEEEEECC------------------EE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG------------ARMVTIDG------------------RP 54 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~------------------~~ 54 (211)
...+|+++|++|+|||||+++|............+..+.. .....++. ..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4578999999999999999999865321110000000000 00011111 23
Q ss_pred EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028294 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 134 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 134 (211)
..+.+|||+|+..... .+....+.+|+|+|+.+.... ...+. ... +.|+++++||+|+.+......++.
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~---~~~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHP---EIF---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCH---HHH---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhh---hhh---hcCCEEEEecccCCcchhhHHHHH
Confidence 4678999998511100 111246789999998764321 11111 111 578999999999854322345666
Q ss_pred HHHHHHc--CCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028294 135 EQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 135 ~~~~~~~--~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 170 (211)
...+... +.+++++|+++|.|+++++++|.+.+...
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 5655553 46899999999999999999998877543
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.64 E-value=5e-17 Score=130.38 Aligned_cols=158 Identities=17% Similarity=0.138 Sum_probs=94.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC----eeeEE-------------------------------------
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT----IGVEF------------------------------------- 43 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~----~~~~~------------------------------------- 43 (211)
..++|+|+|.+++|||||+|+|++..+.+..... .+...
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998875322111 11000
Q ss_pred --------EEEEEEECC-EEEEEEEEeCCCcc-------------chhhchHHHhcccc-EEEEEEECCCHHHHHHHHHH
Q 028294 44 --------GARMVTIDG-RPIKLQIWDTAGQE-------------SFRSITRSYYRGAA-GALLVYDITRRETFNHLSSW 100 (211)
Q Consensus 44 --------~~~~~~~~~-~~~~l~l~D~~G~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~ 100 (211)
....+.+.+ ....+.||||||.. .+..+...++...+ ++++|++++....-. .+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~~ 186 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---DA 186 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---HH
Confidence 000011110 12468899999953 33445666776666 455566665432211 22
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHH--HHHcC-CcEEEEeCCCCCCHHHHHHHHHH
Q 028294 101 LEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQF--AKENG-LLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 101 ~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~--~~~~~-~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
...+......+.|+++|+||+|+.+......+..+.. ....+ .+++.+||+++.|++++++.+.+
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2233333345899999999999975433222221110 00112 24678999999999999998876
No 194
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.62 E-value=1.3e-15 Score=134.20 Aligned_cols=118 Identities=20% Similarity=0.177 Sum_probs=85.3
Q ss_pred CCceeeEEEEcCCCCCHHHHHHHHHhCCCCC----------------CCCC--CeeeEEEEEEEE------------ECC
Q 028294 3 YDYLFKYIIIGDTGVGKSCLLLQFTDKRFQP----------------VHDL--TIGVEFGARMVT------------IDG 52 (211)
Q Consensus 3 ~~~~~~i~vvG~~~~GKSsli~~l~~~~~~~----------------~~~~--~~~~~~~~~~~~------------~~~ 52 (211)
.+...+|+|+|+.++|||||+++|+...... +... ++........+. .++
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~ 95 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 95 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence 4567899999999999999999998641100 0011 111111111122 234
Q ss_pred EEEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028294 53 RPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 53 ~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 124 (211)
..+.++||||||+..|...+..+++.+|++|+|+|+++..+++....|..... .+.|+++++||+|+.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH----TTCEEEEEEECHHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH----cCCCeEEEEECCCcc
Confidence 47889999999999999999999999999999999999877766655543332 378999999999985
No 195
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.60 E-value=7.5e-15 Score=123.69 Aligned_cols=117 Identities=18% Similarity=0.169 Sum_probs=81.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCC------------------CC--CCCCCeeeEEEEEEEEECCEEEEEEEEeCCC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF------------------QP--VHDLTIGVEFGARMVTIDGRPIKLQIWDTAG 64 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~------------------~~--~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G 64 (211)
..=+|+|+|+.++|||||..+|+.... .. ....-.|+++....+.+......++|+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 456899999999999999999963211 00 0111123333333344444456789999999
Q ss_pred ccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 65 QESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
+..|.......++-+|++|+|+|+.+.-..+...-| .....+ +.|.++++||+|...
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~---~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR---ATPVMTFVNKMDREA 166 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT---TCCEEEEEECTTSCC
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh---CCceEEEEecccchh
Confidence 999999999999999999999999986544444444 333333 899999999999753
No 196
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.58 E-value=1.7e-15 Score=127.64 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=80.2
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCCCC---CCCCCCeeeEEEEEE-----EEECCE---------------E------
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKRFQ---PVHDLTIGVEFGARM-----VTIDGR---------------P------ 54 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~---------------~------ 54 (211)
+..++|+|+|.+|+|||||+|+|++..+. ....+++........ +..+.. .
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999998864 222222211000000 000000 0
Q ss_pred -----------EEEEEEeCCCccc-----------hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Q 028294 55 -----------IKLQIWDTAGQES-----------FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM 112 (211)
Q Consensus 55 -----------~~l~l~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (211)
..+.||||||... +......++..+|++|+|+|+++.........|+..+.. .+.
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~ 219 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HED 219 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCC
Confidence 2578999999764 445667788999999999999875433444555544432 368
Q ss_pred eEEEEEecCCCCCC
Q 028294 113 SIMLVGNKCDLAHR 126 (211)
Q Consensus 113 p~ivv~nK~Dl~~~ 126 (211)
|+++|+||+|+...
T Consensus 220 pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 220 KIRVVLNKADMVET 233 (550)
T ss_dssp GEEEEEECGGGSCH
T ss_pred CEEEEEECCCccCH
Confidence 99999999998653
No 197
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.58 E-value=2.4e-17 Score=124.01 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=92.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEE------------EEEEEEC-CE------------------
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG------------ARMVTID-GR------------------ 53 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 53 (211)
..++|+|+|++|||||||+++|+...+.....++++.++. ...+.++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999977554433333333322 1222222 10
Q ss_pred -EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHH
Q 028294 54 -PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKE 132 (211)
Q Consensus 54 -~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 132 (211)
...+.++|++|.-... ..+-...+..+.++|........ ...... .+.|.++++||+|+.+......+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~--~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTI--EKHPGI------MKTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTT--TTCHHH------HTTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhH--hhhhhH------hhcCCEEEEeccccCchhHHHHH
Confidence 1134556666531110 01112334566677753211100 000011 15788999999998654334566
Q ss_pred HHHHHHHHc--CCcEEEEeCCCCCCHHHHHHHHHHHHHH
Q 028294 133 EGEQFAKEN--GLLFLEASARTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 133 ~~~~~~~~~--~~~~~~~s~~~~~~i~~~~~~i~~~~~~ 169 (211)
+....+... +.+++++||++|.|++++|+.|.+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 666666653 5789999999999999999999887643
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.58 E-value=7.2e-15 Score=117.90 Aligned_cols=155 Identities=17% Similarity=0.124 Sum_probs=92.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECC-------------------EEEEEEEEeCCCccc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDG-------------------RPIKLQIWDTAGQES 67 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~l~l~D~~G~~~ 67 (211)
++|+++|.+|+|||||+|+|++........+..+.........+++ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999997643222112111111111122221 235689999999765
Q ss_pred hh----hc---hHHHhccccEEEEEEECCCH----------HHHHHHHHHHHH---------------------------
Q 028294 68 FR----SI---TRSYYRGAAGALLVYDITRR----------ETFNHLSSWLED--------------------------- 103 (211)
Q Consensus 68 ~~----~~---~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~--------------------------- 103 (211)
.. .+ ....++.+|++++|+|+.+. +.+..+..+..+
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 42 12 33457899999999999751 111111110000
Q ss_pred ------------HHH-------------------hc-CCCCeEEEEEecCCCC--CC-CCCCHHHHHHHHHHcCCcEEEE
Q 028294 104 ------------ARQ-------------------HA-NPNMSIMLVGNKCDLA--HR-RAVSKEEGEQFAKENGLLFLEA 148 (211)
Q Consensus 104 ------------~~~-------------------~~-~~~~p~ivv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~~~ 148 (211)
+.. +. ...+|+++++||.|.. +. .....+.++.++...+.+++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i 241 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV 241 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence 000 00 1248999999999842 21 1233566777888888999999
Q ss_pred eCCCCCCHHHHHH
Q 028294 149 SARTAQNVEEAFI 161 (211)
Q Consensus 149 s~~~~~~i~~~~~ 161 (211)
||+....+.++.+
T Consensus 242 SAk~E~el~eL~~ 254 (368)
T 2dby_A 242 SARLEAELAELSG 254 (368)
T ss_dssp CHHHHHHHHTSCH
T ss_pred echhHHHHHHhch
Confidence 9987655554433
No 199
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.58 E-value=8.4e-16 Score=123.31 Aligned_cols=105 Identities=12% Similarity=0.052 Sum_probs=69.3
Q ss_pred EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC--HH
Q 028294 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KE 132 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~ 132 (211)
+.+.||||||... .....+..+|++|+|+|....+....+.. ...+.|+++|+||+|+....... .+
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~~~~~ 240 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEARLAAR 240 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHHHHHH
Confidence 5688999999532 23345688999999999876543222111 01246899999999985421111 11
Q ss_pred HHHHHHHHc-------CCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028294 133 EGEQFAKEN-------GLLFLEASARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 133 ~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 170 (211)
+........ +.+++++||++|.|++++++.|.+.+...
T Consensus 241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~ 285 (355)
T 3p32_A 241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL 285 (355)
T ss_dssp HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 111111111 46899999999999999999999887653
No 200
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.6e-13 Score=110.10 Aligned_cols=152 Identities=14% Similarity=0.079 Sum_probs=98.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccch-------hhchHHHhc
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESF-------RSITRSYYR 77 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~-------~~~~~~~~~ 77 (211)
...+|+++|.|+||||||+|+|++........+.++.+.....+.+++.. +.++|+||.... .......++
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~--i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK--IQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE--EEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE--EEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 34689999999999999999999887655555666777767777777754 679999995321 122334568
Q ss_pred cccEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEecCCCCC--------CCCCCHHHHHHHHHHcCCcEEE
Q 028294 78 GAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAH--------RRAVSKEEGEQFAKENGLLFLE 147 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~ 147 (211)
.+|++++|+|+.++.. .......++.... ..+.|.++++||.|... ......++...+.....+..-+
T Consensus 149 ~ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp 226 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE 226 (376)
T ss_dssp HCSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred hcCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence 8999999999998743 2222222332221 14678899999999632 1234556666666655543222
Q ss_pred EeCCCCCCHHHHH
Q 028294 148 ASARTAQNVEEAF 160 (211)
Q Consensus 148 ~s~~~~~~i~~~~ 160 (211)
+--..+...+++.
T Consensus 227 v~~~~nv~eddl~ 239 (376)
T 4a9a_A 227 IAFRCDATVDDLI 239 (376)
T ss_dssp EEECSCCCHHHHH
T ss_pred eeecccCCHHHHH
Confidence 2223344445543
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.52 E-value=5.3e-15 Score=118.30 Aligned_cols=103 Identities=11% Similarity=0.034 Sum_probs=62.6
Q ss_pred EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028294 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 134 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 134 (211)
+.+.|+||+|.... ...+...+|++++|+|+.++.....+.. .+ ...|.++++||+|+.+.... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 45789999995321 2445678999999999987543221111 11 14688999999998531110 0111
Q ss_pred HHHHH----------HcCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Q 028294 135 EQFAK----------ENGLLFLEASARTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 135 ~~~~~----------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~ 169 (211)
..+.. ....+++.+|++++.|+++++++|.+.+..
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 12211 124568999999999999999999887644
No 202
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.50 E-value=5.5e-15 Score=126.77 Aligned_cols=115 Identities=15% Similarity=0.160 Sum_probs=82.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCC--CCC---CC-----------CCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRF--QPV---HD-----------LTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS 70 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~--~~~---~~-----------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~ 70 (211)
-+|+|+|+.++|||||..+|+.... ... .. .-.|+++....+.+......++|.||||+..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 4799999999999999999973211 100 00 0114444444455555667789999999999999
Q ss_pred chHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 71 ITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
.....++-+|++|+|+|+.+.-..+...-| .....+ +.|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc---CCCeEEEEecccccc
Confidence 999999999999999999886443333333 333443 789999999999743
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.48 E-value=2.7e-13 Score=104.04 Aligned_cols=109 Identities=15% Similarity=0.050 Sum_probs=66.9
Q ss_pred EEEEEEeCCCccchhhchH------HHhccccEEEEEEECCCH---HHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 55 IKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRR---ETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
+.+.||||||......... ..+.. +++|+++|+... ..+.....+..... ...+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~--~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID--LRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH--HHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh--cccCCCeEEEEecccccc
Confidence 4688999999876543321 23455 888889887542 22222111111111 112689999999999864
Q ss_pred CCCCCHHHHHHH----------------------------HHHc--CCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 126 RRAVSKEEGEQF----------------------------AKEN--GLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 126 ~~~~~~~~~~~~----------------------------~~~~--~~~~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
.... ++...+ +... ..+++++||+++.|+++++++|.+.+.
T Consensus 186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 3211 111111 1232 247999999999999999999887763
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.47 E-value=9.3e-14 Score=120.03 Aligned_cols=158 Identities=15% Similarity=0.141 Sum_probs=95.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeE---E--------------------------------------
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE---F-------------------------------------- 43 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~---~-------------------------------------- 43 (211)
..++|+|+|.+++|||||+|+|++..+.+.....++.. .
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 46799999999999999999999987743322111100 0
Q ss_pred --------EEEEEE--ECCEEEEEEEEeCCCccc-------------hhhchHHHh-ccccEEEEEEECCCHHHHHHHHH
Q 028294 44 --------GARMVT--IDGRPIKLQIWDTAGQES-------------FRSITRSYY-RGAAGALLVYDITRRETFNHLSS 99 (211)
Q Consensus 44 --------~~~~~~--~~~~~~~l~l~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~ 99 (211)
....+. ..+ ...+.|+||||... .......++ ..+|++++|+|+++.........
T Consensus 130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 000011 111 11477999999543 222334444 57899999999987432222212
Q ss_pred HHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHH--HcC-CcEEEEeCCCCCCHHHHHHHHHHH
Q 028294 100 WLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAK--ENG-LLFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 100 ~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~--~~~-~~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
+... ....+.|+++|+||+|+................ ..+ .+++.+||++|.|++++++.+.+.
T Consensus 209 ll~~---L~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKE---VDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHH---HCTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHH---HHhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 2222 233478999999999997654333221110000 012 247889999999999999888764
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.45 E-value=1.8e-14 Score=114.96 Aligned_cols=103 Identities=14% Similarity=0.037 Sum_probs=64.5
Q ss_pred EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC--HH
Q 028294 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS--KE 132 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~--~~ 132 (211)
+.+.||||||...... .....+|++++|+|+.....+..+.. .. .+.|.++|+||+|+....... .+
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 4688999999654433 24689999999999976533211110 00 146789999999986421111 01
Q ss_pred HHHHHHHHc-------CCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 133 EGEQFAKEN-------GLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 133 ~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
+........ ..+++++||++|.|++++++.|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 122211221 346899999999999999999988765
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.43 E-value=3.7e-12 Score=110.60 Aligned_cols=117 Identities=17% Similarity=0.169 Sum_probs=79.9
Q ss_pred CceeeEEEEcCCCCCHHHHHHHHHhCC--------CCC--------CCCCCeeeEEEEEEEEE--C-----CEEEEEEEE
Q 028294 4 DYLFKYIIIGDTGVGKSCLLLQFTDKR--------FQP--------VHDLTIGVEFGARMVTI--D-----GRPIKLQIW 60 (211)
Q Consensus 4 ~~~~~i~vvG~~~~GKSsli~~l~~~~--------~~~--------~~~~~~~~~~~~~~~~~--~-----~~~~~l~l~ 60 (211)
++.=+|+|+|+.++|||||..+|+... ... ....-.|+++....+.+ . ...+.++|+
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 355689999999999999999996221 000 00111233333333333 2 235789999
Q ss_pred eCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 028294 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA 124 (211)
Q Consensus 61 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~ 124 (211)
||||+..|.......++-+|++|+|+|+...-..+...-|.+... . +.|.++++||+|..
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~-~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK-Y---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-H---TCCEEEEEECSSST
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH-c---CCCeEEEEcccccc
Confidence 999999999999999999999999999988654444444444333 3 89999999999974
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.39 E-value=6.9e-13 Score=104.03 Aligned_cols=96 Identities=19% Similarity=0.143 Sum_probs=78.3
Q ss_pred ccchhhchHHHhccccEEEEEEECCCHH-HHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC-HHHHHHHHHHcC
Q 028294 65 QESFRSITRSYYRGAAGALLVYDITRRE-TFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-KEEGEQFAKENG 142 (211)
Q Consensus 65 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 142 (211)
++++..+...++.++|++++|+|++++. ++..+..|+..+.. .+.|+++|+||+|+.+..... .++...++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 6777778888999999999999999986 78888888887655 389999999999996533211 344556666778
Q ss_pred CcEEEEeCCCCCCHHHHHHHH
Q 028294 143 LLFLEASARTAQNVEEAFIKT 163 (211)
Q Consensus 143 ~~~~~~s~~~~~~i~~~~~~i 163 (211)
++++++||+++.|++++++.+
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYL 163 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHhhc
Confidence 999999999999999998765
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.36 E-value=2.7e-12 Score=102.13 Aligned_cols=104 Identities=8% Similarity=0.035 Sum_probs=63.1
Q ss_pred EEEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHH
Q 028294 54 PIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEE 133 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~ 133 (211)
...+.|+||||..... ......+|.+++|+|....+....+... +. ..|.++++||+|+..........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~ 215 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAA 215 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHH
Confidence 3467899999964322 2345789999999998654321111111 11 23557778999974322211112
Q ss_pred HHHHHHH----c------CCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 134 GEQFAKE----N------GLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 134 ~~~~~~~----~------~~~~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
...+... . ..+++.+|++++.|++++++.|.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2223221 1 356899999999999999999888654
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.36 E-value=2.2e-11 Score=98.36 Aligned_cols=86 Identities=21% Similarity=0.219 Sum_probs=61.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCC-CCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCccc-
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRF-QPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQES- 67 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~- 67 (211)
...+++++|++|+|||||+|+|++... .....++++.......+.+++. ...+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 346899999999999999999999776 4444444444444445555541 13578999999432
Q ss_pred ------hhhchHHHhccccEEEEEEECCC
Q 028294 68 ------FRSITRSYYRGAAGALLVYDITR 90 (211)
Q Consensus 68 ------~~~~~~~~~~~~d~~i~v~d~~~ 90 (211)
........++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 23345556789999999999863
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.33 E-value=1.3e-12 Score=105.33 Aligned_cols=88 Identities=18% Similarity=0.132 Sum_probs=52.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCE---------------EEEEEEEeCCCccchh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGR---------------PIKLQIWDTAGQESFR 69 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~l~l~D~~G~~~~~ 69 (211)
..++|+++|.+|+|||||+|+|++........+.++.......+.+++. ...+.+||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4578999999999999999999988764444444444444444555432 2358999999977544
Q ss_pred h-------chHHHhccccEEEEEEECCCHH
Q 028294 70 S-------ITRSYYRGAAGALLVYDITRRE 92 (211)
Q Consensus 70 ~-------~~~~~~~~~d~~i~v~d~~~~~ 92 (211)
. ....+++.+|++++|+|+.+..
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 4567789999999999987643
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.27 E-value=5.4e-12 Score=92.39 Aligned_cols=103 Identities=6% Similarity=-0.040 Sum_probs=68.2
Q ss_pred CCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHH----HHhc-CCCCeEEEEEecC-CCCCCCCCCHHHHHH
Q 028294 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDA----RQHA-NPNMSIMLVGNKC-DLAHRRAVSKEEGEQ 136 (211)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~----~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~~ 136 (211)
+|+...+.+|..|+.++|++|||+|.+|.+.++ ....+..+ .... ..+.|++|++||. |++. .++..++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence 378899999999999999999999999975433 22222222 1211 2588999999995 6743 455555544
Q ss_pred HHHH----cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 137 FAKE----NGLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 137 ~~~~----~~~~~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
.... ....+..|||.+|+|+.+.++||.+.+.
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 3222 3445899999999999999999987653
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.15 E-value=1.3e-10 Score=89.20 Aligned_cols=105 Identities=7% Similarity=-0.030 Sum_probs=73.0
Q ss_pred CCCccchhhchHHHhccccEEEEEEECCCHHHHH---HHHHHHHHHHHhc-CCCCeEEEEEec-CCCCCCCCCCHHHHHH
Q 028294 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFN---HLSSWLEDARQHA-NPNMSIMLVGNK-CDLAHRRAVSKEEGEQ 136 (211)
Q Consensus 62 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~---~~~~~~~~~~~~~-~~~~p~ivv~nK-~Dl~~~~~~~~~~~~~ 136 (211)
.+|+...+.+|..|+.++|++|||+|++|.+.++ .+..+...+.... ..+.|++|++|| .|++. .++..++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 3578899999999999999999999999976433 1221112222221 258999999997 57754 355555544
Q ss_pred HHHH----cCCcEEEEeCCCCCCHHHHHHHHHHHHH
Q 028294 137 FAKE----NGLLFLEASARTAQNVEEAFIKTAAKIL 168 (211)
Q Consensus 137 ~~~~----~~~~~~~~s~~~~~~i~~~~~~i~~~~~ 168 (211)
.... ....+..+||.+|+|+.+.++||.+.+.
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 3222 2345899999999999999999988763
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.05 E-value=7.5e-10 Score=89.03 Aligned_cols=96 Identities=26% Similarity=0.298 Sum_probs=73.3
Q ss_pred CccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHH----HHHH
Q 028294 64 GQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE----QFAK 139 (211)
Q Consensus 64 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~~~~ 139 (211)
..+.|.+....+++..|++++|+|+.++. ..|...+.+... +.|+++|+||+|+.+.. ...+... ..+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-NNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-SSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-CCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 46788888999999999999999999864 355555555543 78999999999996533 2333333 3355
Q ss_pred HcCC---cEEEEeCCCCCCHHHHHHHHHHH
Q 028294 140 ENGL---LFLEASARTAQNVEEAFIKTAAK 166 (211)
Q Consensus 140 ~~~~---~~~~~s~~~~~~i~~~~~~i~~~ 166 (211)
..++ .++.+||++|.|++++++.|.+.
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 6677 79999999999999999888664
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.96 E-value=4.6e-11 Score=96.17 Aligned_cols=139 Identities=16% Similarity=0.152 Sum_probs=80.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC-----CCC-CCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh--------ch
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK-----RFQ-PVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS--------IT 72 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~--------~~ 72 (211)
.+|+++|.+|+|||||+|+|++. ... ....+ +.+.....+.++.. +.++||||...... ..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFP--GTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECT--TSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCC--CeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 57999999999999999999976 221 11112 33333334444432 67999999543221 12
Q ss_pred HHHh--ccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEeC
Q 028294 73 RSYY--RGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEASA 150 (211)
Q Consensus 73 ~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s~ 150 (211)
..++ ...|.++++++......+..+. .+......+.|+++++||.|....... ....+.+.+..+..+.+.++
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~----~l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 312 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLA----RLDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSK 312 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCG
T ss_pred HHHhcccccCceEEEEcCCceEEECCEE----EEEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCc
Confidence 2222 6788999999984321101110 022223347899999999998653322 23334444556666666655
Q ss_pred CCCCC
Q 028294 151 RTAQN 155 (211)
Q Consensus 151 ~~~~~ 155 (211)
.+..+
T Consensus 313 ~~~~~ 317 (369)
T 3ec1_A 313 RYAAE 317 (369)
T ss_dssp GGTTT
T ss_pred hhhhh
Confidence 54433
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.95 E-value=5.9e-09 Score=84.82 Aligned_cols=139 Identities=17% Similarity=0.234 Sum_probs=69.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCC--CeeeEEEEEEEEECC--EEEEEEEEeCCCccch--------------
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMVTIDG--RPIKLQIWDTAGQESF-------------- 68 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~l~l~D~~G~~~~-------------- 68 (211)
++++|+|++|+|||||+|.|.+..+...... ..+.......+.+.. ....+.++|++|....
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i 122 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI 122 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence 5799999999999999999998754321111 112222222222222 2236789999885321
Q ss_pred hhchHHHh-------------cc--ccE-EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCC--
Q 028294 69 RSITRSYY-------------RG--AAG-ALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVS-- 130 (211)
Q Consensus 69 ~~~~~~~~-------------~~--~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~-- 130 (211)
...+..++ .. +|+ ++++.|...+-+... +..+.... .+.|+|+|.||+|.....+..
T Consensus 123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l 197 (427)
T 2qag_B 123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKLD-SKVNIIPIIAKADAISKSELTKF 197 (427)
T ss_dssp HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHTC-SCSEEEEEESCGGGSCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHHh-hCCCEEEEEcchhccchHHHHHH
Confidence 01111111 11 233 445556554322222 12222222 589999999999985432211
Q ss_pred HHHHHHHHHHcCCcEEEEeC
Q 028294 131 KEEGEQFAKENGLLFLEASA 150 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~s~ 150 (211)
...+.......+++++.+|.
T Consensus 198 ~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 198 KIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHcCCcEEecCC
Confidence 01112222235677777764
No 216
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.92 E-value=2.2e-09 Score=83.24 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=71.0
Q ss_pred EEeCCCcc-chhhchHHHhccccEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHH
Q 028294 59 IWDTAGQE-SFRSITRSYYRGAAGALLVYDITRRETFN--HLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGE 135 (211)
Q Consensus 59 l~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~ 135 (211)
+-..||+. .........+..+|+++.|+|+.++.+.. .+..++ .++|.++++||+|+.+.. ..+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence 34578876 34456777889999999999999987653 233332 379999999999996521 122334
Q ss_pred HHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Q 028294 136 QFAKENGLLFLEASARTAQNVEEAFIKTAAKILQN 170 (211)
Q Consensus 136 ~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 170 (211)
.+....+++++.+|++++.|++++++.+.+.+...
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK 107 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 44445678999999999999999998888777544
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.89 E-value=2.3e-09 Score=86.24 Aligned_cols=98 Identities=23% Similarity=0.211 Sum_probs=71.8
Q ss_pred CCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHH----HH
Q 028294 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQ----FA 138 (211)
Q Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----~~ 138 (211)
..++.|.+....++..++++++|+|+.++.+ .|...+..... +.|+++|+||+|+.+.. ...+.... .+
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-DNPILLVGNKADLLPRS-VKYPKLLRWMRRMA 128 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-TSCEEEEEECGGGSCTT-CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-CCCEEEEEEChhcCCCc-cCHHHHHHHHHHHH
Confidence 3578899999999899999999999999763 34444444433 78999999999996532 22333333 34
Q ss_pred HHcCC---cEEEEeCCCCCCHHHHHHHHHHHH
Q 028294 139 KENGL---LFLEASARTAQNVEEAFIKTAAKI 167 (211)
Q Consensus 139 ~~~~~---~~~~~s~~~~~~i~~~~~~i~~~~ 167 (211)
...++ .++.+||++|.|++++++.+.+..
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 55666 689999999999999998887653
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.86 E-value=5.4e-11 Score=95.67 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=75.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCC-----CCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccchhh----c----hH
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQP-----VHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQESFRS----I----TR 73 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~----~----~~ 73 (211)
.+|+++|.+|+|||||+|+|++..... ......+.+.....+.++.. +.++||||...... + ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 579999999999999999999763211 11122244444444554433 67999999643321 1 11
Q ss_pred HH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHHcCCcEEEEe
Q 028294 74 SY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 74 ~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~s 149 (211)
.+ ....+.++++++.........+. .+......+.|+++++||.|....... ....+.+.+..+..+.+.+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~----~~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA----RFDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE----EEEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred HhccccccCceEEEEcCCCEEEEcceE----EEEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence 11 25677888898874321101110 112223347899999999998653322 2233344444565554444
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.81 E-value=1.9e-08 Score=83.73 Aligned_cols=151 Identities=11% Similarity=0.046 Sum_probs=82.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHH------hCCCCC----CCCCC-----------eeeEEEEEEEE-------------E
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFT------DKRFQP----VHDLT-----------IGVEFGARMVT-------------I 50 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~------~~~~~~----~~~~~-----------~~~~~~~~~~~-------------~ 50 (211)
....|+++|.+||||||+++.|. +.+... .+.+. .+..+...... +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998 332100 00000 00111110000 0
Q ss_pred CCEEEEEEEEeCCCccchhh-ch---HHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeE-EEEEecCCC
Q 028294 51 DGRPIKLQIWDTAGQESFRS-IT---RSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSI-MLVGNKCDL 123 (211)
Q Consensus 51 ~~~~~~l~l~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl 123 (211)
....+.+.|+||||...... +. ..+ +..+|.+++|+|+........ ....+.. ..|+ ++|+||+|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD----KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH----HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh----hcCceEEEEeCCcc
Confidence 00234688999999653221 11 111 227899999999987532111 1122222 2564 899999998
Q ss_pred CCCCCCCHHHHHHHHHHcCCcE------------------EEEeCCCCCC-HHHHHHHHHHH
Q 028294 124 AHRRAVSKEEGEQFAKENGLLF------------------LEASARTAQN-VEEAFIKTAAK 166 (211)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-i~~~~~~i~~~ 166 (211)
...... ........+.|+ +.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 643211 112223344443 3467888888 88888777654
No 220
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.79 E-value=2.1e-08 Score=77.20 Aligned_cols=137 Identities=22% Similarity=0.204 Sum_probs=68.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCC-------CCeeeEEEEEEEEECCE--EEEEEEEeCCCccchh-------
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD-------LTIGVEFGARMVTIDGR--PIKLQIWDTAGQESFR------- 69 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~l~l~D~~G~~~~~------- 69 (211)
.++++|+|++|+|||||+|.|++........ ...........+.+... ...+.++|++|.....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 5799999999999999999998654322110 00000001111112222 2367899999832100
Q ss_pred hc-------hHH--------------HhccccEEEEEEECC-CHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCC
Q 028294 70 SI-------TRS--------------YYRGAAGALLVYDIT-RRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRR 127 (211)
Q Consensus 70 ~~-------~~~--------------~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 127 (211)
.+ ... .+..+++.++++|.. .+-.... +..+..... ..+++++++|+|.....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD----~~~l~~L~~-~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD----LEFMKHLSK-VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH----HHHHHHHHT-TSEEEEEETTGGGSCHH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH----HHHHHHHHh-cCcEEEEEeccccCCHH
Confidence 00 000 112257888888854 2211111 222233333 38999999999985432
Q ss_pred CCC--HHHHHHHHHHcCCcEEE
Q 028294 128 AVS--KEEGEQFAKENGLLFLE 147 (211)
Q Consensus 128 ~~~--~~~~~~~~~~~~~~~~~ 147 (211)
+.. .+.........++.++.
T Consensus 157 e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHcCccccC
Confidence 211 12233344456776654
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.75 E-value=2.3e-07 Score=75.43 Aligned_cols=157 Identities=17% Similarity=0.134 Sum_probs=81.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCe-eeEE--EEEEEEECCEEEEEEEEeCCCccchhhchHHH-----hc
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTI-GVEF--GARMVTIDGRPIKLQIWDTAGQESFRSITRSY-----YR 77 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~-----~~ 77 (211)
...++|+|++|+|||||+|.|.+........... +... ........ ..-.+.+||++|..........+ +.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3479999999999999999999853322111111 1111 01111111 11146799999853221111222 23
Q ss_pred cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC-------CCCCCCHHH----HHHHHH----HcC
Q 028294 78 GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLA-------HRRAVSKEE----GEQFAK----ENG 142 (211)
Q Consensus 78 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~-------~~~~~~~~~----~~~~~~----~~~ 142 (211)
..+..++ ++..... -..+ .+...+.. .+.|+++|.||.|+. .-.....++ +..+.. +.+
T Consensus 148 ~~~~~~~-lS~G~~~-kqrv-~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g 221 (413)
T 1tq4_A 148 EYDFFII-ISATRFK-KNDI-DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG 221 (413)
T ss_dssp GCSEEEE-EESSCCC-HHHH-HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCeEE-eCCCCcc-HHHH-HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455554 7775211 1111 11112222 278999999999962 111122222 333331 222
Q ss_pred ---CcEEEEeC--CCCCCHHHHHHHHHHHHHH
Q 028294 143 ---LLFLEASA--RTAQNVEEAFIKTAAKILQ 169 (211)
Q Consensus 143 ---~~~~~~s~--~~~~~i~~~~~~i~~~~~~ 169 (211)
..++.+|+ ..+.+++++.+.|.+.+.+
T Consensus 222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 35788999 5566788888877766533
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.59 E-value=4.9e-08 Score=75.65 Aligned_cols=58 Identities=28% Similarity=0.405 Sum_probs=36.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCcc
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQE 66 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 66 (211)
..++|+++|.+|+|||||+|+|.+......... .+.+.....+.++. .+.+|||||..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~-~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDR-PGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCC-CCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 458999999999999999999998764332221 13333332333332 46799999964
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.53 E-value=3.5e-08 Score=75.65 Aligned_cols=57 Identities=25% Similarity=0.403 Sum_probs=36.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES 67 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~ 67 (211)
++++++|.+|+|||||+|+|.+....... +..+.+.....+.++. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~-~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG-AQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC-CCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 58999999999999999999987653322 2224444333333332 468999999654
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.40 E-value=6.9e-08 Score=74.01 Aligned_cols=93 Identities=12% Similarity=0.074 Sum_probs=62.1
Q ss_pred CCCccc-hhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHHHHHHHH
Q 028294 62 TAGQES-FRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEGEQFAKE 140 (211)
Q Consensus 62 ~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~ 140 (211)
.||+.. ........+..+|++|.|+|+.++.+..+.. +. .. ++|.++++||+|+.+.. ..+....+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll--~k~~iivlNK~DL~~~~--~~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS--RKETIILLNKVDIADEK--TTKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT--TSEEEEEEECGGGSCHH--HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc--CCCcEEEEECccCCCHH--HHHHHHHHHHH
Confidence 467653 2345677889999999999999986543211 11 11 78999999999996531 12233445555
Q ss_pred cCCcEEEEeCCCCCCHHHHHHHHHH
Q 028294 141 NGLLFLEASARTAQNVEEAFIKTAA 165 (211)
Q Consensus 141 ~~~~~~~~s~~~~~~i~~~~~~i~~ 165 (211)
.+.++ .+|++++.|++++++.+.+
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 67888 9999999999998876644
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.37 E-value=2.2e-06 Score=70.12 Aligned_cols=86 Identities=15% Similarity=0.034 Sum_probs=51.1
Q ss_pred EEEEEEeCCCccchhhc----hH--HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028294 55 IKLQIWDTAGQESFRSI----TR--SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 128 (211)
+.+.|+||||....... .. .....+|.+++|+|+........ ....+... -.+..||+||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCccc--
Confidence 56889999995432211 11 11235789999999876433222 22233322 3456789999998532
Q ss_pred CCHHHHHHHHHHcCCcEEEEeC
Q 028294 129 VSKEEGEQFAKENGLLFLEASA 150 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s~ 150 (211)
...+.......+.|+.+++.
T Consensus 255 --gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC
T ss_pred --ccHHHHHHHHHCCCEEEEEc
Confidence 23344555567888877775
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.20 E-value=1.7e-06 Score=73.21 Aligned_cols=63 Identities=22% Similarity=0.125 Sum_probs=39.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCC-eeeEEEEEEEE--E-CCEEEEEEEEeCCCccc
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLT-IGVEFGARMVT--I-DGRPIKLQIWDTAGQES 67 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~--~-~~~~~~l~l~D~~G~~~ 67 (211)
..+.|+|+|.+|+|||||+|+|++.........+ .+.+.....+. + ......+.|+||||...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 4688999999999999999999987642111111 12222222221 1 12234578999999643
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.19 E-value=9e-07 Score=72.30 Aligned_cols=91 Identities=13% Similarity=0.056 Sum_probs=53.8
Q ss_pred EEEEEEEeCCCccc--hh----hchHHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 028294 54 PIKLQIWDTAGQES--FR----SITRSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAH 125 (211)
Q Consensus 54 ~~~l~l~D~~G~~~--~~----~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~ 125 (211)
...+.|+||||... .. .....+ ....|.+++|+|+........ ....+... -.+..|++||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~---~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA---SPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH---CSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc---cCCcEEEEecccccc
Confidence 34677999999643 11 111111 124589999999976433222 22333322 346789999999753
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEeCCCCCCH
Q 028294 126 RRAVSKEEGEQFAKENGLLFLEASARTAQNV 156 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 156 (211)
....+.......+.|+.+++. |+++
T Consensus 253 ----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 233445555667899888875 5554
No 228
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.17 E-value=5.4e-07 Score=70.44 Aligned_cols=89 Identities=12% Similarity=0.119 Sum_probs=60.0
Q ss_pred hchHHHhccccEEEEEEECCCHHHH-HHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC--CCHHHHHHHHHHcCCcEE
Q 028294 70 SITRSYYRGAAGALLVYDITRRETF-NHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA--VSKEEGEQFAKENGLLFL 146 (211)
Q Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 146 (211)
.+....+.++|.+++|+|+.+|..- ..+..++.... ..++|.++|+||+|+.+... ...+.........+.+++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 154 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 154 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence 3445578999999999999987542 33333332222 23789999999999975422 012344455556788999
Q ss_pred EEeCCCCCCHHHHHH
Q 028294 147 EASARTAQNVEEAFI 161 (211)
Q Consensus 147 ~~s~~~~~~i~~~~~ 161 (211)
.+|+.++.|++++++
T Consensus 155 ~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 155 LTSSKDQDSLADIIP 169 (307)
T ss_dssp ECCHHHHTTCTTTGG
T ss_pred EEecCCCCCHHHHHh
Confidence 999998888776553
No 229
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.13 E-value=1e-05 Score=66.20 Aligned_cols=85 Identities=15% Similarity=0.048 Sum_probs=48.3
Q ss_pred EEEEEEEeCCCccchhhch----HHH--hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC-e-EEEEEecCCCCC
Q 028294 54 PIKLQIWDTAGQESFRSIT----RSY--YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNM-S-IMLVGNKCDLAH 125 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~~~----~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~Dl~~ 125 (211)
.+.+.|+||||........ ..+ +..+|.+++|+|+..... .... ...... .. | ..+|+||+|...
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~---~~~~~~-~~~~i~gvVlnK~D~~~ 252 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQ---AKAFKE-AVGEIGSIIVTKLDGSA 252 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHH---HHHHHT-TSCSCEEEEEECSSSCS
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHH---HHHHhh-cccCCeEEEEeCCCCcc
Confidence 3467899999965432111 111 126889999999865432 1111 122221 34 5 889999999753
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEe
Q 028294 126 RRAVSKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~s 149 (211)
.. ..........+.++.+++
T Consensus 253 ~~----g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 253 KG----GGALSAVAETKAPIKFIG 272 (432)
T ss_dssp TT----HHHHHHHHHSSCCEEEEC
T ss_pred ch----HHHHHHHHHHCCCEEEee
Confidence 21 223345556777766553
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.05 E-value=1.2e-05 Score=68.76 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
..|+|+|++|||||||++.+.+..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999999864
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.03 E-value=1.4e-05 Score=62.15 Aligned_cols=92 Identities=15% Similarity=0.085 Sum_probs=55.6
Q ss_pred EEEEEEEeCCCccc--hhh-chH-----HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCC
Q 028294 54 PIKLQIWDTAGQES--FRS-ITR-----SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLA 124 (211)
Q Consensus 54 ~~~l~l~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~ 124 (211)
.+.+.|+||||... ... +.. .....+|.+++|+|+..... .......+.. ..| ..+++||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence 34678999999765 322 111 13447899999999864321 1111222222 345 77889999974
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028294 125 HRRAVSKEEGEQFAKENGLLFLEASARTAQNVEE 158 (211)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 158 (211)
. ............+.++.+++ .|+++++
T Consensus 253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 A----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp T----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred c----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 3 23344556667888888776 4556544
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.93 E-value=2.9e-05 Score=61.82 Aligned_cols=84 Identities=18% Similarity=0.166 Sum_probs=54.8
Q ss_pred HhccccEEEEEEECCCHHH-HHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC-CHHHHHHHHHHcCCcEEEEeCCC
Q 028294 75 YYRGAAGALLVYDITRRET-FNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV-SKEEGEQFAKENGLLFLEASART 152 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~ 152 (211)
...++|.+++|.+. +|.. ...+..++...... ++|.+||+||+|+.+.... ..+.........+++++.+|+.+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 46889999988665 4543 33344443333332 7888999999999653210 01223344445788999999999
Q ss_pred CCCHHHHHHH
Q 028294 153 AQNVEEAFIK 162 (211)
Q Consensus 153 ~~~i~~~~~~ 162 (211)
+.|++++...
T Consensus 203 ~~gl~~L~~~ 212 (358)
T 2rcn_A 203 QDGLKPLEEA 212 (358)
T ss_dssp TBTHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 9999887653
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.85 E-value=4.8e-05 Score=60.03 Aligned_cols=91 Identities=12% Similarity=0.022 Sum_probs=51.2
Q ss_pred EEEEEeCCCccchhhchHH------HhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCC
Q 028294 56 KLQIWDTAGQESFRSITRS------YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAV 129 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~~~~~------~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~ 129 (211)
.+.+.|++|.......... ..-..|-.+++.|..... ++......+.... ...++++||.|....
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~it~iilTKlD~~a~--- 283 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---KIDGIILTKLDADAR--- 283 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---CCCEEEEECGGGCSC---
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---CCCEEEEeCcCCccc---
Confidence 3567999996432221111 112468889999975542 2222333333221 234788899996321
Q ss_pred CHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Q 028294 130 SKEEGEQFAKENGLLFLEASARTAQNVEE 158 (211)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 158 (211)
.-.........+.|+.+++ +|+++++
T Consensus 284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 284 -GGAALSISYVIDAPILFVG--VGQGYDD 309 (328)
T ss_dssp -CHHHHHHHHHHTCCEEEEE--CSSSTTC
T ss_pred -hhHHHHHHHHHCCCEEEEe--CCCCccc
Confidence 2334456666788888876 5666544
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.79 E-value=1.6e-06 Score=71.92 Aligned_cols=113 Identities=15% Similarity=0.149 Sum_probs=62.4
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhCCCCCCCCCCeeeEEEEEEEEECCEEEEEEEEeCCCccc--hhhch--------HH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGRPIKLQIWDTAGQES--FRSIT--------RS 74 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~--~~~~~--------~~ 74 (211)
....|+++|.+|+||||+.++|....... ...+.............+......+||..|.+. ....+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999987442111 111111000000000111112335789888632 22222 45
Q ss_pred HhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Q 028294 75 YYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCD 122 (211)
Q Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D 122 (211)
++...++.++|+|.++. +......|+..+... +.+++++-..++
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~---~~~vv~l~~~~~ 160 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN---GYKTFFVESICV 160 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH---TCEEEEEEECCC
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc---CCcEEEEEEECC
Confidence 55567888999999987 445555666655544 445555543333
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.58 E-value=7.4e-05 Score=61.26 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=21.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
...-|.|+|++++|||+|+|+|++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 4566899999999999999999863
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.47 E-value=7.3e-05 Score=53.69 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.+++++|++|+|||||++.+.+.-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999988653
No 237
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.34 E-value=0.00013 Score=53.54 Aligned_cols=29 Identities=31% Similarity=0.293 Sum_probs=22.2
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
|+-.....|+|+|++|||||||++.|.+.
T Consensus 1 ~~~~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 1 MSAPKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp ----CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 65556678999999999999999998763
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.33 E-value=0.00012 Score=52.42 Aligned_cols=22 Identities=23% Similarity=0.529 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.33 E-value=0.00012 Score=53.31 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
-.++|+|++|+|||||++.|.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
No 240
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.30 E-value=0.00017 Score=52.54 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=22.4
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
+....--|+|+|++|+|||||++.|...
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3444456899999999999999999854
No 241
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.29 E-value=0.00017 Score=52.56 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=23.6
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhCC
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
|+......|+|+|++||||||+++.|.+.-
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 555666789999999999999999998654
No 242
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.27 E-value=0.0002 Score=57.00 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~ 31 (211)
.++|+|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999997653
No 243
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.26 E-value=7e-05 Score=58.48 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++++|++|+|||||+|.|.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 68999999999999999998654
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.24 E-value=0.00017 Score=51.98 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~ 29 (211)
++|+|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999854
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.21 E-value=0.0002 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-++|+|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999865
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.20 E-value=0.0002 Score=52.53 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998653
No 247
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.19 E-value=0.00023 Score=51.88 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=21.3
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
|+....-.|+|+|++|||||||++.|.+.
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 33344457999999999999999998753
No 248
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.18 E-value=0.00022 Score=52.96 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-++|+|++|||||||++.|.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998753
No 249
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.16 E-value=0.00027 Score=50.84 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.-.|+|+|++|||||||++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999999865
No 250
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.16 E-value=0.00023 Score=52.67 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|||||||++.|.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998743
No 251
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.14 E-value=0.013 Score=47.95 Aligned_cols=83 Identities=14% Similarity=0.038 Sum_probs=44.8
Q ss_pred EEEEEEEeCCCccchhhchH------HHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEecCCCCCC
Q 028294 54 PIKLQIWDTAGQESFRSITR------SYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMS-IMLVGNKCDLAHR 126 (211)
Q Consensus 54 ~~~l~l~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p-~ivv~nK~Dl~~~ 126 (211)
.+.+.|+||||......... .....+|.+++|+|+...... ......+.. ..+ ..+|+||.|....
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence 35688999999654322111 123468899999998754221 111222222 234 3578999997532
Q ss_pred CCCCHHHHHHHHHHcCCcEEE
Q 028294 127 RAVSKEEGEQFAKENGLLFLE 147 (211)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~ 147 (211)
. ..........+.|+.+
T Consensus 256 ~----g~~l~i~~~~~~Pi~~ 272 (433)
T 2xxa_A 256 G----GAALSIRHITGKPIKF 272 (433)
T ss_dssp C----THHHHHHHHHCCCEEE
T ss_pred H----HHHHHHHHHHCCCeEE
Confidence 2 1233444445665433
No 252
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.14 E-value=0.00079 Score=52.43 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++++|++|+|||||+|.|. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57899999999999999999 53
No 253
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.14 E-value=0.00027 Score=49.68 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999998764
No 254
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.09 E-value=0.00024 Score=50.48 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=17.7
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 028294 8 KYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~ 27 (211)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 255
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.08 E-value=0.00028 Score=52.98 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998653
No 256
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.05 E-value=0.00036 Score=51.18 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
--|+|+|++|||||||++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358899999999999999998653
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.02 E-value=0.00033 Score=51.34 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=21.5
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
....|+|+|++|+|||||++.|.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998754
No 258
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.02 E-value=0.00033 Score=52.16 Aligned_cols=23 Identities=39% Similarity=0.397 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 259
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.01 E-value=0.00041 Score=50.10 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~ 29 (211)
|+|+||+||||+||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999854
No 260
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.00 E-value=0.00041 Score=52.24 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++++|++|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998653
No 261
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.98 E-value=0.00041 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 262
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.96 E-value=0.00042 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 263
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.96 E-value=0.00042 Score=53.24 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 264
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.93 E-value=0.00045 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999865
No 265
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.92 E-value=0.00053 Score=49.32 Aligned_cols=21 Identities=43% Similarity=0.635 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
.++|+|++|+|||||++.|..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 266
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.92 E-value=0.00046 Score=52.46 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998653
No 267
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.92 E-value=0.00053 Score=49.65 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999998754
No 268
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.91 E-value=0.0005 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998653
No 269
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.91 E-value=0.00047 Score=52.71 Aligned_cols=23 Identities=43% Similarity=0.491 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998653
No 270
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.90 E-value=0.0005 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999999865
No 271
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.90 E-value=0.00082 Score=47.63 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+|+|++|+||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 272
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.90 E-value=0.0005 Score=51.70 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998653
No 273
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.90 E-value=0.00057 Score=51.52 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998653
No 274
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.89 E-value=0.00052 Score=52.16 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 275
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.89 E-value=0.00057 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 276
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.88 E-value=0.00057 Score=51.71 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999975
No 277
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.88 E-value=0.00054 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998653
No 278
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.87 E-value=0.00064 Score=48.03 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
..|+|+|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998754
No 279
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.87 E-value=0.0006 Score=52.13 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999975
No 280
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.86 E-value=0.00074 Score=48.47 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=23.5
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
|.......|+|+|++||||||+.+.|...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44445678999999999999999998754
No 281
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.85 E-value=0.00043 Score=50.91 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999876
No 282
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.84 E-value=0.00066 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.-|+|+|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999754
No 283
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.84 E-value=0.00065 Score=51.76 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999998753
No 284
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.84 E-value=0.00066 Score=52.28 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998653
No 285
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.83 E-value=0.00067 Score=51.67 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5799999999999999999865
No 286
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.82 E-value=0.00063 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 287
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.81 E-value=0.00065 Score=51.52 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998653
No 288
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.79 E-value=0.00068 Score=51.81 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998653
No 289
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.79 E-value=0.00082 Score=50.55 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHH
Q 028294 7 FKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~ 27 (211)
..|+|+|++|||||||++.|.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 290
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.79 E-value=0.001 Score=47.64 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=23.7
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
|+-.....|+|.|++||||||+.+.|..
T Consensus 1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 1 MEKSKPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence 5666667899999999999999998864
No 291
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.78 E-value=0.0008 Score=52.40 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.|.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999999854
No 292
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.75 E-value=0.00089 Score=47.07 Aligned_cols=20 Identities=30% Similarity=0.300 Sum_probs=18.6
Q ss_pred eeEEEEcCCCCCHHHHHHHH
Q 028294 7 FKYIIIGDTGVGKSCLLLQF 26 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l 26 (211)
+.|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 293
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.74 E-value=0.00088 Score=51.09 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998654
No 294
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.72 E-value=0.00091 Score=50.06 Aligned_cols=20 Identities=35% Similarity=0.655 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 028294 8 KYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~ 27 (211)
-++|+|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 295
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.71 E-value=0.0009 Score=49.44 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-++|+|++|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998743
No 296
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.70 E-value=0.0009 Score=47.71 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
No 297
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.69 E-value=0.00095 Score=52.22 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=21.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
...-|+|+|++|||||||++.|.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4567999999999999999998754
No 298
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.68 E-value=0.001 Score=48.62 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=21.7
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
|.-.....|+|.|.+||||||+.+.|..
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4434456899999999999999999874
No 299
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.68 E-value=0.0006 Score=50.78 Aligned_cols=23 Identities=13% Similarity=0.327 Sum_probs=15.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHH-hC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFT-DK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~-~~ 29 (211)
--++|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999998 54
No 300
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.68 E-value=0.0011 Score=46.70 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998643
No 301
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.68 E-value=0.0013 Score=46.67 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
..|+|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 302
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.67 E-value=0.0011 Score=48.71 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999853
No 303
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.66 E-value=0.0012 Score=51.39 Aligned_cols=24 Identities=33% Similarity=0.311 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~ 31 (211)
.++++|++|+|||||+|.|.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987543
No 304
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.66 E-value=0.0013 Score=48.62 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 305
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.65 E-value=0.00092 Score=48.61 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
...|+|+|++|+||||+.+.|.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988754
No 306
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.65 E-value=0.0013 Score=49.43 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
....|+|+|+.|||||||++.|.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345699999999999999999876
No 307
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.65 E-value=0.001 Score=53.04 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999998654
No 308
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.64 E-value=0.0012 Score=48.00 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
..|+|+|++||||||+.+.|..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999986
No 309
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.64 E-value=0.0012 Score=48.57 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999853
No 310
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.63 E-value=0.0012 Score=47.02 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.-++++|++|+|||||+++|...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 311
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.62 E-value=0.0011 Score=51.31 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999865
No 312
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.60 E-value=0.0013 Score=47.86 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
..|+|+|++||||||+.+.|...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998643
No 313
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.59 E-value=0.0012 Score=52.52 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998654
No 314
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.59 E-value=0.0015 Score=47.53 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
+.|+|+|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999975
No 315
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.59 E-value=0.0017 Score=46.32 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999863
No 316
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.58 E-value=0.0013 Score=52.55 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 47899999999999999998653
No 317
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.58 E-value=0.0015 Score=47.44 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 318
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.57 E-value=0.0011 Score=53.00 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.-+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999865
No 319
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.57 E-value=0.00077 Score=52.58 Aligned_cols=22 Identities=27% Similarity=0.455 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5899999999999999988854
No 320
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.56 E-value=0.0013 Score=52.46 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999998653
No 321
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.56 E-value=0.0013 Score=52.74 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37899999999999999998654
No 322
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.55 E-value=0.0013 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-++++|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998653
No 323
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.55 E-value=0.0016 Score=47.16 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999875
No 324
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.54 E-value=0.0014 Score=46.37 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
..|+|.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999753
No 325
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.53 E-value=0.0016 Score=47.78 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
+.|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998863
No 326
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.53 E-value=0.0046 Score=42.35 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
..|++.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 46999999999999999877643
No 327
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.51 E-value=0.0018 Score=46.05 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=20.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
....|++.|++|+||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345699999999999999999863
No 328
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.51 E-value=0.00072 Score=48.12 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998854
No 329
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.51 E-value=0.0015 Score=52.42 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 37899999999999999998654
No 330
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.50 E-value=0.0021 Score=46.50 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
...|+|.|++||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999864
No 331
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.50 E-value=0.0015 Score=52.31 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-++|+|++|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999998653
No 332
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.50 E-value=0.0015 Score=52.11 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.|+|+|++|+|||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999998753
No 333
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.49 E-value=0.0017 Score=46.47 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 334
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.47 E-value=0.0019 Score=46.17 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
..|+|.|++||||||+.+.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 335
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.47 E-value=0.0021 Score=46.80 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999874
No 336
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.44 E-value=0.0017 Score=49.75 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||+|++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3899999999999999999864
No 337
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.44 E-value=0.0026 Score=46.28 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=21.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
....|+|+|++|+|||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 338
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.44 E-value=0.0018 Score=50.51 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
-.|+++|++||||||+++.|.+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 4689999999999999999863
No 339
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.43 E-value=0.0019 Score=47.44 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
++|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999864
No 340
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.42 E-value=0.0018 Score=50.38 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
--++++|++||||||+++.|.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 341
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.40 E-value=0.0027 Score=49.82 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
..+-|+|+|++|||||||++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998864
No 342
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.39 E-value=0.0024 Score=46.90 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
.+.|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 343
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.39 E-value=0.0012 Score=45.75 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999864
No 344
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.38 E-value=0.0024 Score=45.80 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+|.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 345
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.38 E-value=0.003 Score=45.77 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=20.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
....|+|.|++||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999863
No 346
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.38 E-value=0.0012 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-++++|++|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998653
No 347
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.38 E-value=0.0018 Score=51.72 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.|.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999864
No 348
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.37 E-value=0.0022 Score=45.73 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999863
No 349
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.37 E-value=0.0029 Score=46.09 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
...|+|+|++|+||||+.+.|...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
No 350
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.37 E-value=0.0026 Score=45.59 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+|.|++||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998863
No 351
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.37 E-value=0.0019 Score=50.31 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
...|+|+|++|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 352
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.36 E-value=0.0024 Score=48.22 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=21.5
Q ss_pred CCCceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 2 SYDYLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 2 ~~~~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
.....+.|+|.|++||||||+.+.|..
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 344567899999999999999998864
No 353
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.36 E-value=0.0027 Score=47.67 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
..+.|+|.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 354
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.35 E-value=0.0022 Score=51.47 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|+|||||++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999753
No 355
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.35 E-value=0.002 Score=52.00 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|+|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999864
No 356
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.34 E-value=0.0022 Score=48.28 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999864
No 357
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.33 E-value=0.0017 Score=51.14 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+.-
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998653
No 358
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.33 E-value=0.0027 Score=49.05 Aligned_cols=24 Identities=21% Similarity=0.348 Sum_probs=21.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...-|+|.|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999974
No 359
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.32 E-value=0.0029 Score=45.86 Aligned_cols=24 Identities=17% Similarity=0.501 Sum_probs=21.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
..+.|+|.|++||||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999864
No 360
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.31 E-value=0.0055 Score=44.48 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.+++.|++|+|||+|++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988743
No 361
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.31 E-value=0.0029 Score=47.82 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHH
Q 028294 7 FKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~ 27 (211)
..|+|+|++||||||+.+.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999987
No 362
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.30 E-value=0.0026 Score=44.54 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 363
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.30 E-value=0.0023 Score=45.27 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=19.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 364
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.29 E-value=0.0025 Score=45.38 Aligned_cols=21 Identities=29% Similarity=0.210 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
-.+|+|++|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999864
No 365
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.27 E-value=0.0035 Score=48.49 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.9
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
....|+|+|++|||||||++.|..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988763
No 366
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.27 E-value=0.0024 Score=52.03 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.|+|+|++|+|||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999864
No 367
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.24 E-value=0.0012 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-++++|++|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998654
No 368
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.23 E-value=0.0031 Score=46.44 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+|+|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 369
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.22 E-value=0.0031 Score=46.66 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
+.|+|.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
No 370
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0024 Score=52.62 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-.++|+|++|||||||++.|.+-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999999764
No 371
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.18 E-value=0.003 Score=46.51 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-++|+|++|+|||||++.+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998844
No 372
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.18 E-value=0.0034 Score=44.51 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
..+.++|++|+|||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999875
No 373
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.18 E-value=0.0032 Score=46.64 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+|.|++||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999863
No 374
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.17 E-value=0.003 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
--|+++|++||||||+++.|.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4689999999999999999864
No 375
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.16 E-value=0.0027 Score=53.02 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|||||||++.+++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998643
No 376
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.15 E-value=0.0033 Score=47.56 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999999864
No 377
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.14 E-value=0.0038 Score=44.26 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988743
No 378
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.14 E-value=0.0043 Score=44.80 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=22.2
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
....|+|.|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999865
No 379
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.14 E-value=0.0031 Score=49.69 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999864
No 380
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.14 E-value=0.0033 Score=49.90 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
+++|+|++|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999774
No 381
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.13 E-value=0.0022 Score=47.75 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
..-|+|.|+.|||||||++.|.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 456899999999999999998865
No 382
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.11 E-value=0.0031 Score=46.48 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 383
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.10 E-value=0.0046 Score=47.25 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++++|++|+|||||++.+.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 48999999999999999998643
No 384
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.10 E-value=0.011 Score=48.37 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=38.0
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHh------------------CCCCC---CCCCCeeeEEEEEEE--E-ECCEEEEEEEE
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTD------------------KRFQP---VHDLTIGVEFGARMV--T-IDGRPIKLQIW 60 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~------------------~~~~~---~~~~~~~~~~~~~~~--~-~~~~~~~l~l~ 60 (211)
...-|.|+|+.++|||+|+|.|+. ..|.. ...-|.|+......+ . .++....+.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlll 145 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEE
T ss_pred ceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEE
Confidence 456677999999999999996641 12211 111233444322111 1 25667889999
Q ss_pred eCCCcc
Q 028294 61 DTAGQE 66 (211)
Q Consensus 61 D~~G~~ 66 (211)
||.|..
T Consensus 146 DTEG~~ 151 (457)
T 4ido_A 146 DTQGTF 151 (457)
T ss_dssp EECCBT
T ss_pred eccCCC
Confidence 999954
No 385
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.08 E-value=0.0038 Score=44.87 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-|++.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998743
No 386
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.08 E-value=0.0037 Score=44.72 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 387
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.06 E-value=0.0037 Score=44.87 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+|.|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998863
No 388
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.06 E-value=0.0042 Score=42.99 Aligned_cols=19 Identities=47% Similarity=0.677 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 028294 9 YIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~ 27 (211)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999975
No 389
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.05 E-value=0.0036 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
--|+|+|++|+|||||++.|.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4689999999999999999864
No 390
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.04 E-value=0.0045 Score=45.03 Aligned_cols=23 Identities=17% Similarity=-0.010 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 391
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.04 E-value=0.0026 Score=49.88 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=21.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
..-++|+|+.|||||||++.|.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4467899999999999999999764
No 392
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.02 E-value=0.0015 Score=47.77 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 393
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.01 E-value=0.0032 Score=47.56 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
....|+++|++||||||+.+.|...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999998753
No 394
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.01 E-value=0.0056 Score=43.73 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+++|.+|+||||+.+.|..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999864
No 395
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.01 E-value=0.0044 Score=44.59 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+|.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 396
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.00 E-value=0.0045 Score=43.95 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+++|.+|+||||+.+.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999875
No 397
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.00 E-value=0.0044 Score=45.59 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
+.|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 398
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.00 E-value=0.0042 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998754
No 399
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.97 E-value=0.004 Score=48.05 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-++|+|++|+|||||++.+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 400
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.96 E-value=0.0045 Score=43.51 Aligned_cols=22 Identities=14% Similarity=0.297 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
..|+|.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 401
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.96 E-value=0.0038 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-++|+|++|+|||||++.|.+.-
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998753
No 402
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.95 E-value=0.0048 Score=45.60 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 028294 9 YIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~ 28 (211)
|+|+|+|||||+|...+|..
T Consensus 32 I~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56799999999999988863
No 403
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.92 E-value=0.0044 Score=51.26 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
.++|+|++|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999864
No 404
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.92 E-value=0.0042 Score=44.24 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998864
No 405
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.91 E-value=0.005 Score=45.76 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-++|+|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 406
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.90 E-value=0.0052 Score=45.93 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=20.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
..+.|+|.|++|+||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998863
No 407
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.87 E-value=0.0052 Score=44.89 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 479999999999999999987
No 408
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.86 E-value=0.0052 Score=46.30 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
...++++|++|+|||+|++.+...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999754
No 409
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.0048 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.|.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 47999999999999999998754
No 410
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.85 E-value=0.0058 Score=46.32 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 411
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.83 E-value=0.006 Score=45.36 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+|+|++||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999864
No 412
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.82 E-value=0.0053 Score=50.27 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
+++|+|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998764
No 413
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.81 E-value=0.0063 Score=42.65 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
.|+|.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 414
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.80 E-value=0.0045 Score=43.73 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988643
No 415
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.0048 Score=45.78 Aligned_cols=24 Identities=8% Similarity=-0.087 Sum_probs=19.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
+-|+..|+++.||++|++++.+..
T Consensus 30 ilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 30 ILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred eEEEecCcccccHHHHHHHHhccc
Confidence 444444999999999999999663
No 416
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.78 E-value=0.0064 Score=44.87 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.-.++|.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988743
No 417
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.78 E-value=0.0057 Score=46.21 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
-.|+|+|++|+||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999864
No 418
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.75 E-value=0.0053 Score=52.14 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5899999999999999998864
No 419
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.74 E-value=0.0071 Score=43.73 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
..+++.|++|+|||+|++.+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998754
No 420
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.73 E-value=0.0065 Score=44.42 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+++|.+|+||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
No 421
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.72 E-value=0.004 Score=44.22 Aligned_cols=23 Identities=26% Similarity=0.210 Sum_probs=16.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 422
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.71 E-value=0.0067 Score=45.14 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.3
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
...-|++.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999998754
No 423
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.70 E-value=0.006 Score=51.81 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999865
No 424
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.66 E-value=0.0063 Score=51.93 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57999999999999999998754
No 425
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.65 E-value=0.0067 Score=48.68 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
No 426
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.65 E-value=0.0067 Score=48.45 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=17.5
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 028294 9 YIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~ 27 (211)
.+|+|++|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5699999999999999986
No 427
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.64 E-value=0.0093 Score=46.00 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999975
No 428
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.64 E-value=0.0072 Score=50.85 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999754
No 429
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.59 E-value=0.0065 Score=51.08 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 430
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.59 E-value=0.0076 Score=51.44 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.|.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999754
No 431
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=95.54 E-value=0.036 Score=39.87 Aligned_cols=84 Identities=10% Similarity=-0.013 Sum_probs=54.4
Q ss_pred EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEecCCCCCCCCCCHH
Q 028294 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHA--NPNMSIMLVGNKCDLAHRRAVSKE 132 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~ 132 (211)
+.+.++|+|+.. .......+..+|.+|+++..+... ..+..++..+.... ..+.++.+|+|+.|.... . ..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~--~-~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT--M-LN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE--E-EH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch--H-HH
Confidence 567899999866 344556677899999999876554 55556666665443 245788999999985321 1 23
Q ss_pred HHHHHHHHcCCcE
Q 028294 133 EGEQFAKENGLLF 145 (211)
Q Consensus 133 ~~~~~~~~~~~~~ 145 (211)
+..+.....+.++
T Consensus 149 ~~~~~l~~~~~~v 161 (206)
T 4dzz_A 149 VLKESIKDTGVKA 161 (206)
T ss_dssp HHHHHHHHHTCCB
T ss_pred HHHHHHHHcCCce
Confidence 3444444445443
No 432
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.52 E-value=0.0078 Score=46.03 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 433
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.52 E-value=0.0087 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.6
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~ 27 (211)
....|+|.|++||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999987
No 434
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.47 E-value=0.009 Score=43.88 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
-++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 435
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.43 E-value=0.011 Score=42.75 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
...|+|.|..||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999988753
No 436
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.42 E-value=0.0054 Score=52.23 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 437
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.41 E-value=0.009 Score=45.94 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
...+++.|++|+|||+|++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 438
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.41 E-value=0.01 Score=40.69 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhCC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
...|++.|++|+|||++.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 4569999999999999999997543
No 439
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.009 Score=50.98 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~~~ 31 (211)
++|+|++|+|||||++.+.+...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999987643
No 440
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.38 E-value=0.0061 Score=51.95 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999998854
No 441
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.37 E-value=0.0096 Score=45.46 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.-.+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346999999999999999999754
No 442
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.36 E-value=0.11 Score=40.41 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=16.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~ 29 (211)
+++.|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999999754
No 443
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.35 E-value=0.013 Score=42.33 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 444
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.34 E-value=0.011 Score=44.51 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
...+++.|++|+|||+|++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999999999999753
No 445
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.32 E-value=0.0053 Score=52.10 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5899999999999999877754
No 446
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.31 E-value=0.01 Score=45.95 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-.|++.|++|+|||+|++.+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35899999999999999999864
No 447
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.31 E-value=0.011 Score=42.98 Aligned_cols=20 Identities=45% Similarity=0.609 Sum_probs=17.5
Q ss_pred eEEEEcCCCCCHHHHHHHHH
Q 028294 8 KYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~ 27 (211)
-.+|+|+.|+||||++.++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 35789999999999999874
No 448
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.29 E-value=0.01 Score=45.96 Aligned_cols=85 Identities=12% Similarity=0.024 Sum_probs=47.0
Q ss_pred EEEEEEeCCCccchhhc----hHHHhc--cccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCC
Q 028294 55 IKLQIWDTAGQESFRSI----TRSYYR--GAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRA 128 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~ 128 (211)
..+.|.||+|....... ....+. ..+.+++|+|+... ...+..+...+.. -+ ..-++.||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~-~~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VP-VNQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SC-CCEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CC-CCEEEEeCCCcccc--
Confidence 46789999996643321 112222 35678889987643 2233333222221 12 23566799997532
Q ss_pred CCHHHHHHHHHHcCCcEEEEe
Q 028294 129 VSKEEGEQFAKENGLLFLEAS 149 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~s 149 (211)
...+.......+.++..+.
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2345566667788765554
No 449
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.23 E-value=0.007 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988754
No 450
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.22 E-value=0.011 Score=46.07 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-.+++.|++|+|||+|++.+...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998753
No 451
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.20 E-value=0.012 Score=45.44 Aligned_cols=24 Identities=29% Similarity=0.164 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
+..+++.|++|+|||+|.+.+...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346778899999999999998754
No 452
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.15 E-value=0.012 Score=46.74 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
-+.|+|++|+|||||++.+....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998653
No 453
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.15 E-value=0.01 Score=43.33 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
.+++.||+|+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999888864
No 454
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.14 E-value=0.016 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
..|+|+|++|+|||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998743
No 455
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.11 E-value=0.01 Score=46.73 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=19.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
.+++.|++|+||||+++.+.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999876
No 456
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.11 E-value=0.013 Score=42.62 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
..|+|+|++|+|||+|...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998553
No 457
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.10 E-value=0.014 Score=45.50 Aligned_cols=85 Identities=20% Similarity=0.083 Sum_probs=47.2
Q ss_pred EEEEEeCCCccchhhch-------HHH-----hccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Q 028294 56 KLQIWDTAGQESFRSIT-------RSY-----YRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDL 123 (211)
Q Consensus 56 ~l~l~D~~G~~~~~~~~-------~~~-----~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 123 (211)
.+.+.|+||........ ... ....+.+++|+|.... ...+... ..+... -...-+++||.|.
T Consensus 188 dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a-~~~~~~---~~i~gvVlTk~D~ 261 (306)
T 1vma_A 188 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQA-KIFKEA---VNVTGIILTKLDG 261 (306)
T ss_dssp SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHH-HHHHHH---SCCCEEEEECGGG
T ss_pred CEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHH-HHHHhc---CCCCEEEEeCCCC
Confidence 47899999963222211 111 1347888999998643 1222221 222222 1234567899996
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEeC
Q 028294 124 AHRRAVSKEEGEQFAKENGLLFLEASA 150 (211)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~s~ 150 (211)
... ...+.......+.|+.++..
T Consensus 262 ~~~----gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 262 TAK----GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp CSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred ccc----hHHHHHHHHHHCCCEEEEeC
Confidence 432 12355666778888877754
No 458
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.09 E-value=0.19 Score=37.14 Aligned_cols=90 Identities=12% Similarity=0.114 Sum_probs=59.5
Q ss_pred EEEEEEeCCCccchhhchHHHhccccEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCCCCCCHHHH
Q 028294 55 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLSSWLEDARQHANPNMSIMLVGNKCDLAHRRAVSKEEG 134 (211)
Q Consensus 55 ~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~ 134 (211)
+.+.|+|+|+.. .......+..+|.+|+++... ..+...+..++..+.........+.+|+|+.+... ....++
T Consensus 119 yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~~- 192 (245)
T 3ea0_A 119 YDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSDE- 192 (245)
T ss_dssp CSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHHH-
T ss_pred CCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHHH-
Confidence 567899998854 234566778899999999875 55666677777777655433456889999998643 233333
Q ss_pred HHHHHHcCCcEEEEeCCC
Q 028294 135 EQFAKENGLLFLEASART 152 (211)
Q Consensus 135 ~~~~~~~~~~~~~~s~~~ 152 (211)
+.+..+.+++..-..+
T Consensus 193 --~~~~~~~~v~~~ip~~ 208 (245)
T 3ea0_A 193 --IEKVIGRPISKRIPQD 208 (245)
T ss_dssp --HHHHHTSCEEEEECCC
T ss_pred --HHHHhCCCeEEECCCC
Confidence 3334677776654443
No 459
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.09 E-value=0.013 Score=43.45 Aligned_cols=21 Identities=29% Similarity=0.416 Sum_probs=18.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877753
No 460
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.09 E-value=0.0065 Score=46.92 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=18.4
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
|+. ..+.|+|.|+.||||||+.+.|..
T Consensus 1 Ms~-~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 1 MSK-KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp -CT-TSCEEEEESCC---CCTHHHHHHH
T ss_pred CCC-CceEEEEECCCCCCHHHHHHHHHH
Confidence 554 345699999999999999998864
No 461
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.08 E-value=0.014 Score=54.32 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
+|+|||++|+|||||++.|.+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 689999999999999998883
No 462
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.07 E-value=0.015 Score=52.13 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKRF 31 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~~ 31 (211)
.++|+|++|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 479999999999999999996543
No 463
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.05 E-value=0.013 Score=46.42 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.-.++|.|++|+|||+|++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998753
No 464
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.04 E-value=0.017 Score=42.96 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=20.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
....|+|+|++|+||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 465
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.04 E-value=0.016 Score=43.06 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
.+++.|+|++||||||+.++|..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 57899999999999999998853
No 466
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.00 E-value=0.015 Score=44.82 Aligned_cols=21 Identities=24% Similarity=0.566 Sum_probs=18.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHH
Q 028294 7 FKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~ 27 (211)
..+++.|++|+|||++++.+.
T Consensus 68 ~~vll~G~~GtGKT~la~~la 88 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMA 88 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 469999999999999998665
No 467
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.98 E-value=0.052 Score=42.41 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
..+++.|++|+|||+|++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999754
No 468
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.98 E-value=0.013 Score=47.57 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
..-|+++|++||||||+.++|..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999875
No 469
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.95 E-value=0.023 Score=45.08 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=19.8
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHH
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~ 27 (211)
...+|+++|++|+||||+.+.|.
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHH
Confidence 34679999999999999998765
No 470
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.94 E-value=0.015 Score=46.18 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998854
No 471
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.93 E-value=0.022 Score=43.27 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.7
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
....+++.|++|+|||+|++.+...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4567999999999999999999764
No 472
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.93 E-value=0.015 Score=45.70 Aligned_cols=22 Identities=18% Similarity=0.520 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.+++.|++|+||||+++.+...
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3899999999999999998754
No 473
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.89 E-value=0.017 Score=44.48 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999998753
No 474
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.88 E-value=0.022 Score=44.96 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHh
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~ 28 (211)
.-|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998864
No 475
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.85 E-value=0.017 Score=44.58 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-.++++|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999998754
No 476
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.85 E-value=0.017 Score=47.08 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-.|++.||||+|||+|++++...
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999854
No 477
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.83 E-value=0.019 Score=44.78 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.-|+|+||+|||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 45889999999999999999754
No 478
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.83 E-value=0.023 Score=44.17 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.-|+|+||+|||||+|...|...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 45789999999999999999743
No 479
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.81 E-value=0.017 Score=45.22 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-.|++.|++|+|||+|++.+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999999864
No 480
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.80 E-value=0.024 Score=42.02 Aligned_cols=28 Identities=14% Similarity=0.019 Sum_probs=21.5
Q ss_pred CCCCceeeEEEEcCCCCCHHHHHHHHHh
Q 028294 1 MSYDYLFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 1 m~~~~~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
|......-|++.|..|+||||+++.|..
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444567799999999999999998863
No 481
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.80 E-value=0.018 Score=47.06 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
+-.|++.||||+|||.|.+++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 482
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.76 E-value=0.018 Score=45.34 Aligned_cols=19 Identities=47% Similarity=0.677 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 028294 9 YIIIGDTGVGKSCLLLQFT 27 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~ 27 (211)
.+|+|++|+|||+|+.++.
T Consensus 26 ~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3799999999999999874
No 483
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.75 E-value=0.0092 Score=53.47 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhCC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.++|+|++|+|||||++.|.+..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 484
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.75 E-value=0.02 Score=45.08 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=19.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
-|+|+|++|+|||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
No 485
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.69 E-value=0.02 Score=46.83 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
+-.|++.||||+|||+|++++...
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999854
No 486
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.67 E-value=0.021 Score=44.58 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
..+++.|++|+|||+|++.+...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999754
No 487
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.64 E-value=0.0051 Score=45.80 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~~ 30 (211)
++|+|++|+|||||++.+.+..
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhccc
Confidence 4678999999999999998654
No 488
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.60 E-value=0.019 Score=48.10 Aligned_cols=20 Identities=25% Similarity=0.630 Sum_probs=0.0
Q ss_pred EEEEcCCCCCHHHHHHH--HHh
Q 028294 9 YIIIGDTGVGKSCLLLQ--FTD 28 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~--l~~ 28 (211)
++|+|++|+|||||++. +.+
T Consensus 42 ~~l~G~nGsGKSTL~~~~ll~G 63 (525)
T 1tf7_A 42 TLVSGTSGTGKTLFSIQFLYNG 63 (525)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
No 489
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.58 E-value=0.023 Score=40.56 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 028294 9 YIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 9 i~vvG~~~~GKSsli~~l~~~ 29 (211)
++|+|+++||||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999854
No 490
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.57 E-value=0.022 Score=44.77 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.+++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 491
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.54 E-value=0.023 Score=45.27 Aligned_cols=21 Identities=33% Similarity=0.287 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
-++++|++|+|||||++.+..
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 578999999999999999874
No 492
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.51 E-value=0.03 Score=39.77 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhCC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDKR 30 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~~ 30 (211)
.-|++.|++|+||||+...|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 458999999999999999998653
No 493
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.023 Score=45.89 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
+-.|++.||||+|||.|.+++.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 346999999999999999999854
No 494
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.50 E-value=0.022 Score=46.38 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHh
Q 028294 8 KYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~ 28 (211)
-++|+|++|+|||||++.+.+
T Consensus 28 ~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 368999999999999999874
No 495
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.50 E-value=0.02 Score=45.44 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.1
Q ss_pred ceeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 5 YLFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 5 ~~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
..-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999998743
No 496
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=94.48 E-value=0.022 Score=48.01 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.++++|++|+|||||++.+...
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999998754
No 497
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.48 E-value=0.026 Score=43.91 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHh
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTD 28 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~ 28 (211)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 498
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.48 E-value=0.01 Score=44.85 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCCHHHHHHHHHhC
Q 028294 7 FKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 7 ~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
..+++.|++|+|||+|++.+...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34889999999999999999753
No 499
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.45 E-value=0.023 Score=45.03 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHhC
Q 028294 8 KYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 8 ~i~vvG~~~~GKSsli~~l~~~ 29 (211)
.+++.|++|+|||+|++.+...
T Consensus 72 ~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998744
No 500
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.42 E-value=0.015 Score=49.06 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCCHHHHHHHHHhC
Q 028294 6 LFKYIIIGDTGVGKSCLLLQFTDK 29 (211)
Q Consensus 6 ~~~i~vvG~~~~GKSsli~~l~~~ 29 (211)
...|+|+|++|||||||.+.|.+.
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 357899999999999999998754
Done!