Query 028295
Match_columns 211
No_of_seqs 143 out of 282
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 09:17:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4259 Putative nucleic acid- 99.8 3.9E-19 8.5E-24 156.1 10.0 127 52-183 106-259 (260)
2 KOG4259 Putative nucleic acid- 99.5 6.5E-14 1.4E-18 123.5 7.6 86 74-162 149-259 (260)
3 KOG1861 Leucine permease trans 19.4 73 0.0016 32.0 2.0 24 163-186 229-252 (540)
4 PF06884 DUF1264: Protein of u 12.3 1.9E+02 0.0042 25.1 2.6 12 127-138 146-157 (171)
5 PF02042 RWP-RK: RWP-RK domain 10.7 1.5E+02 0.0032 20.9 1.1 12 127-138 31-42 (52)
6 PF10642 Tom5: Mitochondrial i 10.0 2.8E+02 0.0062 19.3 2.4 19 89-107 2-21 (49)
7 PF04081 DNA_pol_delta_4: DNA 7.5 2.8E+02 0.006 22.9 1.7 16 98-113 85-100 (124)
8 COG1149 MinD superfamily P-loo 7.3 3.7E+02 0.0081 25.1 2.6 49 57-111 186-241 (284)
9 PF05673 DUF815: Protein of un 6.4 4.9E+02 0.011 23.8 2.9 9 131-139 206-214 (249)
10 KOG2147 Nucleolar protein invo 5.9 1.7E+03 0.036 24.0 6.6 14 99-112 115-128 (823)
No 1
>KOG4259 consensus Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=3.9e-19 Score=156.15 Aligned_cols=127 Identities=35% Similarity=0.415 Sum_probs=80.5
Q ss_pred ccCCCCCcceeecCCCCCCCCCCCCChHHHHHHHHh---hhCCCCCCCH---HHHHHHHHhhhCCCCCCCC-------C-
Q 028295 52 KNGNDSKTAVTITAVSPVSGDADLVTDTQKKIRRAE---RFGMPVQMSE---EEKRNTRAERFGTGSKTQG-------S- 117 (211)
Q Consensus 52 k~~~~~kk~vkIt~~~~~~~~~~~lSe~EKk~~RAe---RFGip~~lse---~eKkk~RAeRFGl~~~~~~-------s- 117 (211)
+....++++|.|+++. -............|++ ||+.|+++.+ .+++..||+||||+..... +
T Consensus 106 k~~~~Eks~v~~tstg----k~~E~paet~~~srae~~~rf~~Pvvae~k~a~e~laaRAkRFgIp~d~t~i~sadnKas 181 (260)
T KOG4259|consen 106 KIISKEKSQVPETSTG----KEAEEPAETTEESRAEVSNRFSSPVVAEEKTAQEKLAARAKRFGIPVDDTQIKSADNKAS 181 (260)
T ss_pred hhhhhccccccccccc----cccccchhhhhhhhcccccccCCCcccccccchHHHHHHHHhcCCCCchHHHHhhccchh
Confidence 3344577888887743 1123333445556666 6666665433 3566666666666533210 0
Q ss_pred -------ccccchHHHHHHHHHhhhCCCCCCC--cc---hHHHHHHHHhhhcCCCCCCCchHHHHH-HHHHhccCCCCC
Q 028295 118 -------EVSKTSEELKRKARAERFGLPVPSS--VS---EEEAKRKARLARFAPYPKTDSVEEDKR-KARALRFSKTSS 183 (211)
Q Consensus 118 -------~~~k~~eeeKlKkRAERFG~~~~~~--~~---~~eeKkkkRaERFG~~s~~d~~eE~Kk-kkRaeRFg~~~s 183 (211)
........+++|.||+|||+++++. .. +...|+++|++|||. ...+...|+|| ++|+||||+..+
T Consensus 182 ~a~~fG~~~~~p~a~dklk~rAqrfg~~v~s~Sr~s~~de~~~kl~arkkRfgg-titde~tEAKKaRaRaERFgtA~~ 259 (260)
T KOG4259|consen 182 SAANFGNKIQQPLASDKLKNRAQRFGPQVRSNSRSSQRDENAPKLSARKKRFGG-TITDEPTEAKKARARAERFGTAAK 259 (260)
T ss_pred hhhhcCCcccchhhhHHHHHHHHhcCCCCCcccccCccccccchhhhhHHhcCC-CCCCchhhHHHHHHHHHHhcccCC
Confidence 0011235679999999999999864 11 223599999999993 34566778887 999999998765
No 2
>KOG4259 consensus Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=6.5e-14 Score=123.46 Aligned_cols=86 Identities=36% Similarity=0.521 Sum_probs=60.6
Q ss_pred CCCChHHHHHHHHhhhCCCCCC-----------------------CHHHHHHHHHhhhCCCCCCCCCccccch-HHHHHH
Q 028295 74 DLVTDTQKKIRRAERFGMPVQM-----------------------SEEEKRNTRAERFGTGSKTQGSEVSKTS-EELKRK 129 (211)
Q Consensus 74 ~~lSe~EKk~~RAeRFGip~~l-----------------------se~eKkk~RAeRFGl~~~~~~s~~~k~~-eeeKlK 129 (211)
-+.+..+++.+||+|||||+.. -..++++.||+|||+..... +..++.. ..-+|+
T Consensus 149 e~k~a~e~laaRAkRFgIp~d~t~i~sadnKas~a~~fG~~~~~p~a~dklk~rAqrfg~~v~s~-Sr~s~~de~~~kl~ 227 (260)
T KOG4259|consen 149 EEKTAQEKLAARAKRFGIPVDDTQIKSADNKASSAANFGNKIQQPLASDKLKNRAQRFGPQVRSN-SRSSQRDENAPKLS 227 (260)
T ss_pred ccccchHHHHHHHHhcCCCCchHHHHhhccchhhhhhcCCcccchhhhHHHHHHHHhcCCCCCcc-cccCccccccchhh
Confidence 3456778899999999999631 12789999999999986532 2222221 224899
Q ss_pred HHHhhhCCCCCCCcchHHHHH-HHHhhhcCCCCC
Q 028295 130 ARAERFGLPVPSSVSEEEAKR-KARLARFAPYPK 162 (211)
Q Consensus 130 kRAERFG~~~~~~~~~~eeKk-kkRaERFG~~s~ 162 (211)
+|++|||-..- ....+.|+ ++|+||||++.+
T Consensus 228 arkkRfggtit--de~tEAKKaRaRaERFgtA~~ 259 (260)
T KOG4259|consen 228 ARKKRFGGTIT--DEPTEAKKARARAERFGTAAK 259 (260)
T ss_pred hhHHhcCCCCC--CchhhHHHHHHHHHHhcccCC
Confidence 99999993321 23455666 999999998643
No 3
>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]
Probab=19.36 E-value=73 Score=31.99 Aligned_cols=24 Identities=50% Similarity=0.566 Sum_probs=18.8
Q ss_pred CCchHHHHHHHHHhccCCCCCCcc
Q 028295 163 TDSVEEDKRKARALRFSKTSSSSV 186 (211)
Q Consensus 163 ~d~~eE~KkkkRaeRFg~~~s~s~ 186 (211)
...+++++++.|++||....+.+.
T Consensus 229 ~~~d~e~rr~~Ra~RF~~~~s~s~ 252 (540)
T KOG1861|consen 229 AGSDEEARRKRRARRFSQGGSRST 252 (540)
T ss_pred cCchHHHHHHHHHHHHhhcccccc
Confidence 367888899999999977766544
No 4
>PF06884 DUF1264: Protein of unknown function (DUF1264); InterPro: IPR010686 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 200 residues long. Some family members are annotated as putative lipoproteins.
Probab=12.32 E-value=1.9e+02 Score=25.10 Aligned_cols=12 Identities=50% Similarity=0.736 Sum_probs=6.5
Q ss_pred HHHHHHhhhCCC
Q 028295 127 KRKARAERFGLP 138 (211)
Q Consensus 127 KlKkRAERFG~~ 138 (211)
-.+.|-+|||+.
T Consensus 146 lv~~RD~r~gv~ 157 (171)
T PF06884_consen 146 LVKERDERFGVD 157 (171)
T ss_pred HHHHHHHhcCCC
Confidence 345555555554
No 5
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=10.67 E-value=1.5e+02 Score=20.89 Aligned_cols=12 Identities=42% Similarity=0.827 Sum_probs=7.0
Q ss_pred HHHHHHhhhCCC
Q 028295 127 KRKARAERFGLP 138 (211)
Q Consensus 127 KlKkRAERFG~~ 138 (211)
.+|++.-++||.
T Consensus 31 ~LKr~CR~~GI~ 42 (52)
T PF02042_consen 31 TLKRRCRRLGIP 42 (52)
T ss_pred HHHHHHHHcCCC
Confidence 355666666664
No 6
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=10.01 E-value=2.8e+02 Score=19.34 Aligned_cols=19 Identities=47% Similarity=0.597 Sum_probs=12.0
Q ss_pred hCC-CCCCCHHHHHHHHHhh
Q 028295 89 FGM-PVQMSEEEKRNTRAER 107 (211)
Q Consensus 89 FGi-p~~lse~eKkk~RAeR 107 (211)
||. +..+|++|++...++-
T Consensus 2 Fgg~~~qpS~eE~k~~e~~A 21 (49)
T PF10642_consen 2 FGGPPPQPSEEEIKAAEAQA 21 (49)
T ss_pred CCCCCCCCCHHHHHHHHHHH
Confidence 666 3456777777766653
No 7
>PF04081 DNA_pol_delta_4: DNA polymerase delta, subunit 4 ; InterPro: IPR007218 DNA polymerase is responsible for effective DNA replication. The function of the delta subunit 4 of DNA polymerase is not yet known.; GO: 0006260 DNA replication, 0005634 nucleus
Probab=7.47 E-value=2.8e+02 Score=22.93 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=12.7
Q ss_pred HHHHHHHHhhhCCCCC
Q 028295 98 EEKRNTRAERFGTGSK 113 (211)
Q Consensus 98 ~eKkk~RAeRFGl~~~ 113 (211)
--++=.||++|||+.|
T Consensus 85 Rl~RW~RA~~lgL~PP 100 (124)
T PF04081_consen 85 RLERWERAKRLGLNPP 100 (124)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 3466789999999865
No 8
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=7.34 E-value=3.7e+02 Score=25.11 Aligned_cols=49 Identities=20% Similarity=0.398 Sum_probs=33.9
Q ss_pred CCcceeecCCCCCCCCCCCCChHHHHHHHHhhhCCCCCC-------CHHHHHHHHHhhhCCC
Q 028295 57 SKTAVTITAVSPVSGDADLVTDTQKKIRRAERFGMPVQM-------SEEEKRNTRAERFGTG 111 (211)
Q Consensus 57 ~kk~vkIt~~~~~~~~~~~lSe~EKk~~RAeRFGip~~l-------se~eKkk~RAeRFGl~ 111 (211)
-..+|-+|+|+|. -+.|..|-..=.++||+|... ... .-..++..-|++
T Consensus 186 aD~ai~VTEPTp~-----glhD~kr~~el~~~f~ip~~iViNr~~~g~s-~ie~~~~e~gi~ 241 (284)
T COG1149 186 ADLAILVTEPTPF-----GLHDLKRALELVEHFGIPTGIVINRYNLGDS-EIEEYCEEEGIP 241 (284)
T ss_pred CCEEEEEecCCcc-----chhHHHHHHHHHHHhCCceEEEEecCCCCch-HHHHHHHHcCCC
Confidence 3457788888877 788999999999999998632 112 445555555554
No 9
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=6.42 E-value=4.9e+02 Score=23.75 Aligned_cols=9 Identities=56% Similarity=0.958 Sum_probs=4.5
Q ss_pred HHhhhCCCC
Q 028295 131 RAERFGLPV 139 (211)
Q Consensus 131 RAERFG~~~ 139 (211)
=++++|+..
T Consensus 206 ~~~~~g~~~ 214 (249)
T PF05673_consen 206 YAERYGLEL 214 (249)
T ss_pred HHHHcCCCC
Confidence 445555554
No 10
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=5.89 E-value=1.7e+03 Score=23.95 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=7.3
Q ss_pred HHHHHHHhhhCCCC
Q 028295 99 EKRNTRAERFGTGS 112 (211)
Q Consensus 99 eKkk~RAeRFGl~~ 112 (211)
.+...+|.-|.|+.
T Consensus 115 q~~~~kas~fNL~d 128 (823)
T KOG2147|consen 115 QQSYKKASLFNLND 128 (823)
T ss_pred HHHHhHhhhcCCCc
Confidence 34445555666553
Done!