Query 028296
Match_columns 211
No_of_seqs 199 out of 1536
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 09:18:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 1.3E-38 2.7E-43 258.7 5.9 158 1-158 1-188 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 1.5E-34 3.3E-39 201.5 5.0 77 2-80 1-77 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 1.5E-31 3.3E-36 189.0 6.4 74 2-76 1-74 (83)
4 smart00432 MADS MADS domain. 100.0 2.6E-31 5.7E-36 175.2 5.4 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 1.9E-30 4.1E-35 171.2 4.7 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 1.8E-28 4E-33 156.7 2.9 51 9-59 1-51 (51)
7 PF01486 K-box: K-box region; 99.8 5.9E-20 1.3E-24 134.4 11.5 98 71-168 1-98 (100)
8 KOG0015 Regulator of arginine 99.8 3.9E-20 8.5E-25 154.9 2.8 60 2-61 63-122 (338)
9 COG5068 ARG80 Regulator of arg 99.5 1.7E-14 3.6E-19 126.3 4.2 61 1-61 81-141 (412)
10 PF06005 DUF904: Protein of un 91.7 1.6 3.5E-05 29.8 7.4 47 116-167 1-47 (72)
11 PRK04098 sec-independent trans 88.4 0.54 1.2E-05 37.0 3.3 30 42-75 14-43 (158)
12 PF01166 TSC22: TSC-22/dip/bun 86.4 1.8 3.8E-05 28.2 4.2 28 141-168 17-44 (59)
13 smart00787 Spc7 Spc7 kinetocho 85.3 23 0.00049 31.1 12.0 70 99-168 182-255 (312)
14 KOG4797 Transcriptional regula 85.1 4.6 9.9E-05 29.7 6.3 25 142-166 71-95 (123)
15 PRK10884 SH3 domain-containing 84.8 21 0.00045 29.4 11.0 30 139-168 140-169 (206)
16 PF06698 DUF1192: Protein of u 84.2 2.7 6E-05 27.5 4.4 33 107-139 12-44 (59)
17 PF05812 Herpes_BLRF2: Herpesv 83.8 10 0.00022 28.4 7.9 69 83-154 4-76 (118)
18 PHA03155 hypothetical protein; 83.4 13 0.00027 27.7 8.1 57 83-139 9-65 (115)
19 PRK15422 septal ring assembly 81.7 12 0.00025 26.0 6.9 43 116-163 1-43 (79)
20 PF10584 Proteasome_A_N: Prote 81.5 0.51 1.1E-05 25.0 0.1 12 45-56 5-16 (23)
21 PF08317 Spc7: Spc7 kinetochor 78.9 43 0.00092 29.3 11.5 58 111-168 201-260 (325)
22 TIGR02894 DNA_bind_RsfA transc 78.5 31 0.00067 27.3 11.3 55 113-168 77-134 (161)
23 PHA02592 52 DNA topisomerase I 76.4 63 0.0014 29.7 12.9 44 24-74 283-326 (439)
24 TIGR03752 conj_TIGR03752 integ 76.2 60 0.0013 30.1 11.8 70 86-168 70-139 (472)
25 PF07106 TBPIP: Tat binding pr 75.9 18 0.00039 28.4 7.6 56 84-143 81-136 (169)
26 COG2433 Uncharacterized conser 75.4 53 0.0012 31.4 11.4 73 87-168 427-504 (652)
27 COG3074 Uncharacterized protei 74.7 24 0.00051 23.9 7.4 44 116-164 1-44 (79)
28 KOG3759 Uncharacterized RUN do 74.4 48 0.001 30.7 10.5 64 96-168 184-250 (621)
29 PHA03162 hypothetical protein; 74.2 37 0.00079 25.9 10.6 69 83-154 14-86 (135)
30 cd07429 Cby_like Chibby, a nuc 73.7 5.8 0.00013 29.2 3.9 20 149-168 76-95 (108)
31 PRK13169 DNA replication intia 73.7 26 0.00057 25.9 7.4 46 118-168 7-52 (110)
32 PF07106 TBPIP: Tat binding pr 73.5 42 0.0009 26.3 9.9 55 85-140 112-166 (169)
33 PF06156 DUF972: Protein of un 72.6 29 0.00063 25.5 7.4 45 119-168 8-52 (107)
34 PRK01919 tatB sec-independent 72.2 12 0.00027 29.7 5.6 28 43-74 15-42 (169)
35 PF10504 DUF2452: Protein of u 71.8 27 0.00058 27.5 7.4 44 117-160 28-74 (159)
36 KOG1962 B-cell receptor-associ 71.7 57 0.0012 27.1 9.8 53 116-168 155-209 (216)
37 PF04849 HAP1_N: HAP1 N-termin 69.7 38 0.00082 29.6 8.6 87 83-169 161-265 (306)
38 TIGR02338 gimC_beta prefoldin, 69.7 40 0.00087 24.5 8.9 44 124-168 61-104 (110)
39 cd00187 TOP4c DNA Topoisomeras 69.7 43 0.00094 30.8 9.4 27 44-75 302-328 (445)
40 PRK01371 sec-independent trans 69.6 2.6 5.7E-05 32.4 1.3 53 42-121 14-66 (137)
41 TIGR02231 conserved hypothetic 68.5 68 0.0015 29.9 10.8 51 114-165 122-172 (525)
42 PF07888 CALCOCO1: Calcium bin 68.0 92 0.002 29.5 11.2 24 145-168 213-236 (546)
43 PRK09343 prefoldin subunit bet 67.2 50 0.0011 24.6 9.7 41 127-168 68-108 (121)
44 KOG4797 Transcriptional regula 66.1 12 0.00025 27.6 4.0 45 124-168 46-90 (123)
45 PF10186 Atg14: UV radiation r 65.5 81 0.0018 26.5 10.4 12 51-62 7-18 (302)
46 PF00170 bZIP_1: bZIP transcri 65.1 31 0.00068 22.4 5.7 34 131-168 16-49 (64)
47 PF08700 Vps51: Vps51/Vps67; 64.8 42 0.00091 22.9 6.7 63 58-127 2-66 (87)
48 PF09278 MerR-DNA-bind: MerR, 62.9 29 0.00063 22.3 5.3 49 115-164 14-62 (65)
49 PF14009 DUF4228: Domain of un 61.7 7.8 0.00017 30.0 2.7 33 40-74 14-46 (181)
50 PF10226 DUF2216: Uncharacteri 60.8 52 0.0011 26.7 7.2 28 139-166 49-76 (195)
51 PF07926 TPR_MLP1_2: TPR/MLP1/ 59.6 73 0.0016 23.9 10.9 41 127-168 88-128 (132)
52 PRK10884 SH3 domain-containing 59.4 62 0.0013 26.6 7.7 26 143-168 137-162 (206)
53 KOG0971 Microtubule-associated 58.8 2E+02 0.0044 29.2 11.9 56 82-137 325-389 (1243)
54 PRK11637 AmiB activator; Provi 58.6 1.4E+02 0.0031 27.0 11.5 49 120-168 76-126 (428)
55 smart00338 BRLZ basic region l 58.2 45 0.00098 21.6 5.6 34 131-168 16-49 (65)
56 PF07716 bZIP_2: Basic region 56.0 48 0.001 20.8 5.7 34 131-168 15-48 (54)
57 PF15397 DUF4618: Domain of un 55.7 1.2E+02 0.0027 25.8 9.0 31 138-168 186-216 (258)
58 cd01109 HTH_YyaN Helix-Turn-He 55.3 58 0.0013 23.6 6.3 53 115-168 57-109 (113)
59 KOG4603 TBP-1 interacting prot 54.6 1.1E+02 0.0024 24.5 8.7 55 85-140 119-173 (201)
60 PF04977 DivIC: Septum formati 54.6 21 0.00045 23.9 3.6 26 143-168 22-47 (80)
61 PF01920 Prefoldin_2: Prefoldi 53.8 75 0.0016 22.3 7.9 25 144-168 75-99 (106)
62 PF06156 DUF972: Protein of un 53.5 32 0.0007 25.2 4.6 37 131-168 9-45 (107)
63 PRK00888 ftsB cell division pr 53.4 30 0.00064 25.2 4.4 25 144-168 33-57 (105)
64 PRK05561 DNA topoisomerase IV 52.1 2.2E+02 0.0048 28.1 11.4 111 44-160 337-459 (742)
65 PF10211 Ax_dynein_light: Axon 50.8 1.3E+02 0.0028 24.2 10.2 19 150-168 168-186 (189)
66 PF09755 DUF2046: Uncharacteri 49.0 1.9E+02 0.004 25.4 11.0 40 123-162 106-152 (310)
67 cd04769 HTH_MerR2 Helix-Turn-H 48.9 55 0.0012 23.9 5.3 54 115-168 56-109 (116)
68 PF09941 DUF2173: Uncharacteri 48.7 15 0.00032 27.1 2.2 27 32-59 3-29 (108)
69 KOG4637 Adaptor for phosphoino 48.0 14 0.00031 33.1 2.3 41 33-75 367-412 (464)
70 TIGR01478 STEVOR variant surfa 47.9 41 0.00089 29.1 5.0 45 7-73 25-69 (295)
71 PF06005 DUF904: Protein of un 47.9 65 0.0014 21.8 5.1 26 141-166 14-39 (72)
72 COG4467 Regulator of replicati 47.0 1.1E+02 0.0025 22.5 7.0 46 118-168 7-52 (114)
73 COG4831 Roadblock/LC7 domain [ 46.7 19 0.0004 26.0 2.3 31 30-61 3-33 (109)
74 COG4917 EutP Ethanolamine util 46.7 15 0.00033 28.1 2.0 25 35-59 59-83 (148)
75 PLN03128 DNA topoisomerase 2; 46.2 1.9E+02 0.004 30.1 10.1 27 44-74 961-987 (1135)
76 KOG4445 Uncharacterized conser 46.1 54 0.0012 28.7 5.4 106 28-139 100-219 (368)
77 KOG0930 Guanine nucleotide exc 46.0 69 0.0015 27.9 6.0 44 112-164 7-50 (395)
78 PF07889 DUF1664: Protein of u 45.5 1.3E+02 0.0029 22.7 7.5 21 117-137 76-96 (126)
79 PF05529 Bap31: B-cell recepto 43.6 1.7E+02 0.0036 23.3 8.1 30 139-168 155-184 (192)
80 PRK13169 DNA replication intia 42.0 63 0.0014 23.8 4.6 37 131-168 9-45 (110)
81 TIGR01950 SoxR redox-sensitive 41.9 72 0.0016 24.4 5.2 54 115-168 57-110 (142)
82 PF04849 HAP1_N: HAP1 N-termin 41.5 34 0.00073 29.9 3.6 23 146-168 161-183 (306)
83 PRK13729 conjugal transfer pil 41.4 1.3E+02 0.0029 27.9 7.5 28 141-168 93-120 (475)
84 PF11365 DUF3166: Protein of u 41.3 80 0.0017 22.8 4.9 30 139-168 9-38 (96)
85 PF10491 Nrf1_DNA-bind: NLS-bi 41.1 68 0.0015 26.4 5.0 45 28-74 41-88 (214)
86 PF03980 Nnf1: Nnf1 ; InterPr 41.1 1.3E+02 0.0029 21.5 11.5 44 112-168 60-103 (109)
87 smart00338 BRLZ basic region l 40.8 96 0.0021 20.0 5.0 30 139-168 34-63 (65)
88 PF12925 APP_E2: E2 domain of 40.4 2E+02 0.0044 23.4 10.1 89 65-169 9-98 (193)
89 cd01107 HTH_BmrR Helix-Turn-He 40.4 1.2E+02 0.0026 21.8 6.0 48 115-168 58-105 (108)
90 cd04776 HTH_GnyR Helix-Turn-He 39.9 1.5E+02 0.0032 21.8 6.6 54 115-168 55-110 (118)
91 PRK01770 sec-independent trans 39.5 28 0.00062 27.8 2.6 28 43-74 15-42 (171)
92 cd04787 HTH_HMRTR_unk Helix-Tu 39.1 1.2E+02 0.0026 22.6 6.0 53 115-168 57-109 (133)
93 PF02009 Rifin_STEVOR: Rifin/s 39.0 28 0.00061 30.3 2.7 30 37-76 20-49 (299)
94 COG0216 PrfA Protein chain rel 38.6 2.7E+02 0.0058 24.9 8.6 25 141-165 79-103 (363)
95 PF14723 SSFA2_C: Sperm-specif 38.6 1.1E+02 0.0025 24.4 5.8 18 120-137 160-177 (179)
96 PRK00708 sec-independent trans 38.4 44 0.00095 27.6 3.6 28 43-74 15-42 (209)
97 KOG0709 CREB/ATF family transc 38.2 41 0.00088 31.0 3.7 24 146-169 287-310 (472)
98 PF07888 CALCOCO1: Calcium bin 38.0 3.6E+02 0.0078 25.6 10.8 30 31-61 78-114 (546)
99 PLN03230 acetyl-coenzyme A car 37.9 1.5E+02 0.0032 27.3 7.1 77 52-135 37-121 (431)
100 PF04859 DUF641: Plant protein 37.9 1.7E+02 0.0036 22.3 6.5 50 117-167 81-130 (131)
101 PRK09822 lipopolysaccharide co 37.8 29 0.00062 29.3 2.4 39 20-59 119-160 (269)
102 PF14645 Chibby: Chibby family 37.5 59 0.0013 24.2 3.9 19 150-168 76-94 (116)
103 KOG4643 Uncharacterized coiled 37.1 3.8E+02 0.0082 27.6 10.2 42 127-168 282-324 (1195)
104 PF13815 Dzip-like_N: Iguana/D 37.0 1.7E+02 0.0037 21.5 6.9 49 117-166 67-115 (118)
105 cd01282 HTH_MerR-like_sg3 Heli 36.7 1.3E+02 0.0029 21.7 5.7 52 115-167 56-110 (112)
106 PF04880 NUDE_C: NUDE protein, 36.4 92 0.002 24.8 5.0 43 121-168 2-47 (166)
107 KOG0183 20S proteasome, regula 36.3 19 0.00042 29.8 1.2 16 41-56 4-19 (249)
108 PRK15002 redox-sensitivie tran 36.1 1.2E+02 0.0025 23.7 5.6 54 115-168 67-120 (154)
109 cd01108 HTH_CueR Helix-Turn-He 36.0 1.5E+02 0.0033 21.9 6.1 53 115-168 57-109 (127)
110 cd04770 HTH_HMRTR Helix-Turn-H 36.0 1.4E+02 0.0031 21.8 5.9 53 115-168 57-109 (123)
111 TIGR00606 rad50 rad50. This fa 35.7 5.5E+02 0.012 27.1 12.0 12 43-54 150-161 (1311)
112 KOG0184 20S proteasome, regula 35.7 19 0.00042 30.0 1.1 21 36-56 3-23 (254)
113 PRK10227 DNA-binding transcrip 35.6 1.4E+02 0.003 22.6 5.8 53 115-168 57-109 (135)
114 KOG0804 Cytoplasmic Zn-finger 35.5 3.7E+02 0.008 25.0 9.5 22 143-164 387-408 (493)
115 KOG4360 Uncharacterized coiled 35.5 3.9E+02 0.0085 25.3 10.0 86 83-168 160-263 (596)
116 PRK11637 AmiB activator; Provi 35.4 3.4E+02 0.0073 24.5 11.3 25 144-168 109-133 (428)
117 KOG0977 Nuclear envelope prote 35.3 4E+02 0.0087 25.4 10.3 21 85-105 109-129 (546)
118 PRK13923 putative spore coat p 35.0 1E+02 0.0022 24.6 5.1 25 144-168 110-134 (170)
119 TIGR01069 mutS2 MutS2 family p 34.9 4.6E+02 0.01 26.0 12.6 25 120-144 540-564 (771)
120 PF09726 Macoilin: Transmembra 34.9 4.5E+02 0.0097 25.8 12.4 49 121-169 599-653 (697)
121 cd02980 TRX_Fd_family Thioredo 34.6 30 0.00066 22.8 1.9 30 39-70 47-76 (77)
122 cd04779 HTH_MerR-like_sg4 Heli 33.9 2.1E+02 0.0045 21.7 7.1 51 115-166 56-109 (134)
123 PF13758 Prefoldin_3: Prefoldi 33.8 1.4E+02 0.0031 21.6 5.3 18 78-95 8-25 (99)
124 COG1382 GimC Prefoldin, chaper 33.6 2.1E+02 0.0045 21.5 11.1 38 130-168 70-107 (119)
125 TIGR02047 CadR-PbrR Cd(II)/Pb( 33.3 1.7E+02 0.0036 21.7 5.9 53 115-168 57-109 (127)
126 PRK04863 mukB cell division pr 33.3 6.1E+02 0.013 27.4 11.7 54 111-165 430-483 (1486)
127 PHA02414 hypothetical protein 33.1 1.5E+02 0.0032 21.5 5.1 45 117-162 37-81 (111)
128 PF08432 Vfa1: AAA-ATPase Vps4 32.9 46 0.001 26.6 2.9 12 39-50 11-22 (182)
129 PF11460 DUF3007: Protein of u 32.9 83 0.0018 23.0 3.9 17 113-129 87-103 (104)
130 PF04697 Pinin_SDK_N: pinin/SD 32.8 75 0.0016 24.2 3.8 36 85-120 6-41 (134)
131 KOG4005 Transcription factor X 32.3 2.4E+02 0.0052 23.9 7.0 28 141-168 107-134 (292)
132 PF01920 Prefoldin_2: Prefoldi 31.9 1.5E+02 0.0033 20.6 5.3 70 32-110 35-104 (106)
133 PF07083 DUF1351: Protein of u 31.8 2.9E+02 0.0063 22.6 7.9 51 63-113 23-73 (215)
134 TIGR01410 tatB twin arginine-t 31.6 31 0.00066 23.9 1.5 29 43-75 14-42 (80)
135 PTZ00108 DNA topoisomerase 2-l 31.2 6.9E+02 0.015 26.8 12.7 27 44-74 962-988 (1388)
136 cd01110 HTH_SoxR Helix-Turn-He 31.2 1.7E+02 0.0036 22.2 5.7 53 115-168 57-110 (139)
137 smart00415 HSF heat shock fact 31.2 33 0.00072 24.7 1.7 46 29-76 6-52 (105)
138 PF06785 UPF0242: Uncharacteri 31.1 3.9E+02 0.0084 23.9 9.4 42 126-168 130-171 (401)
139 TIGR02043 ZntR Zn(II)-responsi 30.9 1.9E+02 0.0041 21.6 5.9 53 115-168 58-111 (131)
140 PRK09514 zntR zinc-responsive 30.5 1.7E+02 0.0036 22.2 5.6 54 115-168 58-111 (140)
141 KOG2129 Uncharacterized conser 30.3 4.4E+02 0.0096 24.3 11.1 25 145-169 278-302 (552)
142 KOG4252 GTP-binding protein [S 30.2 29 0.00063 28.3 1.3 28 39-74 91-118 (246)
143 cd01106 HTH_TipAL-Mta Helix-Tu 30.2 2E+02 0.0043 20.3 5.7 14 115-128 57-70 (103)
144 PF10226 DUF2216: Uncharacteri 30.1 3E+02 0.0066 22.4 10.2 27 142-168 112-138 (195)
145 PF12252 SidE: Dot/Icm substra 30.1 4E+02 0.0087 27.7 9.1 67 85-152 1127-1193(1439)
146 PF14662 CCDC155: Coiled-coil 29.9 3.1E+02 0.0067 22.4 9.6 48 119-167 70-117 (193)
147 TIGR02209 ftsL_broad cell divi 29.9 1.5E+02 0.0032 20.0 4.8 28 141-168 27-54 (85)
148 PF09789 DUF2353: Uncharacteri 29.5 4E+02 0.0086 23.5 13.1 76 20-106 34-110 (319)
149 COG5068 ARG80 Regulator of arg 29.4 27 0.0006 31.6 1.2 60 8-74 18-77 (412)
150 TIGR02168 SMC_prok_B chromosom 29.4 6.1E+02 0.013 25.6 13.5 13 47-59 139-151 (1179)
151 PF06785 UPF0242: Uncharacteri 29.3 4.2E+02 0.009 23.7 9.6 50 118-168 101-150 (401)
152 PHA02109 hypothetical protein 29.1 2.5E+02 0.0054 22.7 6.3 43 107-161 179-223 (233)
153 PF09789 DUF2353: Uncharacteri 29.1 4E+02 0.0087 23.5 10.1 41 127-168 69-109 (319)
154 TIGR03185 DNA_S_dndD DNA sulfu 29.0 5.3E+02 0.011 24.8 10.9 22 85-106 394-415 (650)
155 cd04785 HTH_CadR-PbrR-like Hel 28.9 2.2E+02 0.0047 21.0 5.9 53 115-168 57-109 (126)
156 PF02416 MttA_Hcf106: mttA/Hcf 28.8 4.2 9.2E-05 25.9 -3.0 29 43-75 12-40 (53)
157 cd04786 HTH_MerR-like_sg7 Heli 28.7 2.4E+02 0.0052 21.2 6.1 52 115-168 57-108 (131)
158 PF13252 DUF4043: Protein of u 28.6 28 0.00061 30.9 1.1 28 33-60 272-299 (341)
159 PF05470 eIF-3c_N: Eukaryotic 28.4 5.4E+02 0.012 24.7 10.0 111 45-168 19-131 (595)
160 PF07407 Seadorna_VP6: Seadorn 28.4 1.6E+02 0.0035 26.1 5.6 36 110-157 23-58 (420)
161 PF07956 DUF1690: Protein of U 28.1 2.8E+02 0.006 21.3 9.2 14 66-79 13-26 (142)
162 KOG0250 DNA repair protein RAD 28.0 6.9E+02 0.015 25.9 11.6 22 144-165 442-463 (1074)
163 cd03064 TRX_Fd_NuoE TRX-like [ 27.9 38 0.00083 22.8 1.5 29 39-71 52-80 (80)
164 PF15254 CCDC14: Coiled-coil d 27.8 6.3E+02 0.014 25.3 10.3 52 116-168 427-478 (861)
165 PF15188 CCDC-167: Coiled-coil 27.8 2.2E+02 0.0048 20.0 7.5 61 84-162 7-67 (85)
166 TIGR00606 rad50 rad50. This fa 27.5 7.5E+02 0.016 26.1 12.5 50 117-167 299-348 (1311)
167 PRK00409 recombination and DNA 27.5 6.2E+02 0.013 25.1 12.6 6 44-49 465-470 (782)
168 TIGR02449 conserved hypothetic 27.2 1.9E+02 0.0042 19.2 7.8 44 120-168 1-44 (65)
169 PRK00404 tatB sec-independent 26.7 60 0.0013 25.1 2.4 15 43-58 15-29 (141)
170 PF10112 Halogen_Hydrol: 5-bro 26.6 69 0.0015 25.7 3.0 51 24-76 95-150 (199)
171 PF15058 Speriolin_N: Sperioli 26.4 1.1E+02 0.0025 24.9 4.1 25 143-168 17-41 (200)
172 smart00340 HALZ homeobox assoc 26.3 1.6E+02 0.0035 17.9 3.7 21 148-168 8-28 (44)
173 cd03063 TRX_Fd_FDH_beta TRX-li 26.3 57 0.0012 23.2 2.1 36 38-74 44-80 (92)
174 PF04728 LPP: Lipoprotein leuc 26.2 1.9E+02 0.0041 18.7 4.9 30 139-168 4-33 (56)
175 PF04873 EIN3: Ethylene insens 26.2 22 0.00048 31.7 0.0 41 22-62 50-91 (354)
176 KOG3612 PHD Zn-finger protein 26.1 4.6E+02 0.01 25.0 8.4 72 35-106 404-477 (588)
177 PF07676 PD40: WD40-like Beta 25.9 53 0.0012 18.5 1.6 20 41-60 9-28 (39)
178 PF03428 RP-C: Replication pro 25.9 2E+02 0.0042 23.1 5.4 65 41-108 96-170 (177)
179 cd04783 HTH_MerR1 Helix-Turn-H 25.8 2.4E+02 0.0053 20.7 5.7 51 115-168 57-107 (126)
180 PF10498 IFT57: Intra-flagella 25.7 4.9E+02 0.011 23.3 11.1 27 63-89 199-227 (359)
181 PF09151 DUF1936: Domain of un 25.6 52 0.0011 18.6 1.4 23 35-57 3-25 (36)
182 TIGR02044 CueR Cu(I)-responsiv 25.3 2.7E+02 0.0058 20.5 5.8 53 115-168 57-109 (127)
183 TIGR03752 conj_TIGR03752 integ 25.1 1.5E+02 0.0033 27.5 5.1 12 157-168 121-132 (472)
184 cd02973 TRX_GRX_like Thioredox 25.1 82 0.0018 19.8 2.7 26 43-73 1-26 (67)
185 PRK14858 tatA twin arginine tr 25.1 26 0.00057 25.8 0.2 29 43-75 15-43 (108)
186 PF10267 Tmemb_cc2: Predicted 24.6 5.4E+02 0.012 23.4 9.4 71 85-164 7-81 (395)
187 PRK14860 tatA twin arginine tr 24.3 12 0.00025 25.0 -1.6 36 34-75 8-43 (64)
188 PF09744 Jnk-SapK_ap_N: JNK_SA 24.1 3.6E+02 0.0077 21.2 10.8 25 144-168 88-112 (158)
189 PF09388 SpoOE-like: Spo0E lik 23.9 1.7E+02 0.0038 17.5 4.1 38 96-135 4-41 (45)
190 PF09726 Macoilin: Transmembra 23.9 7E+02 0.015 24.5 10.0 49 120-169 464-512 (697)
191 cd04790 HTH_Cfa-like_unk Helix 23.7 2.5E+02 0.0055 22.1 5.7 47 115-168 58-104 (172)
192 TIGR01411 tatAE twin arginine- 23.7 10 0.00022 23.6 -1.9 35 34-74 6-40 (47)
193 PRK13752 putative transcriptio 23.6 2.7E+02 0.0059 21.2 5.7 51 115-168 64-114 (144)
194 TIGR02051 MerR Hg(II)-responsi 23.4 3.1E+02 0.0066 20.2 6.6 51 115-168 56-106 (124)
195 PF06574 FAD_syn: FAD syntheta 23.2 1.7E+02 0.0038 22.6 4.6 26 26-51 22-47 (157)
196 KOG0964 Structural maintenance 23.2 8.5E+02 0.018 25.2 11.0 59 109-168 771-830 (1200)
197 PF05812 Herpes_BLRF2: Herpesv 23.1 1.3E+02 0.0028 22.6 3.5 22 147-168 5-26 (118)
198 PF06020 Roughex: Drosophila r 23.0 43 0.00093 29.0 1.1 14 37-50 184-197 (334)
199 PF08614 ATG16: Autophagy prot 22.7 4E+02 0.0086 21.2 11.1 46 123-168 134-181 (194)
200 PRK09413 IS2 repressor TnpA; R 22.7 2.2E+02 0.0048 20.8 4.9 26 143-168 76-101 (121)
201 TIGR03156 GTP_HflX GTP-binding 22.5 4.8E+02 0.01 23.0 7.8 14 34-47 24-37 (351)
202 KOG2702 Predicted panthothenat 22.3 2E+02 0.0044 24.6 4.9 53 41-94 23-79 (323)
203 PF03233 Cauli_AT: Aphid trans 22.3 4E+02 0.0086 21.1 6.3 25 49-73 25-49 (163)
204 PHA00327 minor capsid protein 22.3 2.2E+02 0.0047 22.7 4.8 48 49-102 88-135 (187)
205 PHA03162 hypothetical protein; 22.2 1.3E+02 0.0028 23.0 3.4 22 147-168 15-36 (135)
206 PLN03229 acetyl-coenzyme A car 22.1 3.8E+02 0.0083 26.5 7.4 21 42-62 49-69 (762)
207 KOG4196 bZIP transcription fac 22.1 1.5E+02 0.0033 22.6 3.8 19 87-105 86-104 (135)
208 PF13870 DUF4201: Domain of un 22.1 3.9E+02 0.0084 20.9 12.1 21 148-168 80-100 (177)
209 KOG3048 Molecular chaperone Pr 22.0 3.4E+02 0.0074 21.1 5.7 29 110-138 7-35 (153)
210 PF02887 PK_C: Pyruvate kinase 21.7 99 0.0021 22.4 2.8 33 30-73 6-38 (117)
211 PRK00888 ftsB cell division pr 21.2 1.6E+02 0.0034 21.4 3.7 27 82-108 34-60 (105)
212 PHA02698 hypothetical protein; 21.2 2.5E+02 0.0055 19.3 4.4 17 56-73 39-55 (89)
213 PF03962 Mnd1: Mnd1 family; I 21.2 4.4E+02 0.0095 21.1 11.8 22 85-106 72-93 (188)
214 PF12325 TMF_TATA_bd: TATA ele 21.1 3.6E+02 0.0078 20.1 8.0 39 66-106 16-54 (120)
215 PF10662 PduV-EutP: Ethanolami 21.1 83 0.0018 24.3 2.3 24 35-58 58-81 (143)
216 PHA03155 hypothetical protein; 20.9 1.4E+02 0.0031 22.1 3.4 22 147-168 10-31 (115)
217 PF11629 Mst1_SARAH: C termina 20.9 1.6E+02 0.0034 18.5 3.1 17 113-129 5-21 (49)
218 PF07558 Shugoshin_N: Shugoshi 20.8 1.1E+02 0.0024 18.7 2.4 30 139-168 15-44 (46)
219 PF02183 HALZ: Homeobox associ 20.6 2.2E+02 0.0047 17.4 5.0 31 138-168 5-35 (45)
220 cd04788 HTH_NolA-AlbR Helix-Tu 20.6 2.3E+02 0.0049 19.8 4.4 37 115-158 57-93 (96)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=1.3e-38 Score=258.68 Aligned_cols=158 Identities=33% Similarity=0.473 Sum_probs=123.9
Q ss_pred CCccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhhccccc
Q 028296 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLW 80 (211)
Q Consensus 1 MgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~~~~~ 80 (211)
|||+||+|++|+|.++|+|||+|||+||||||+||||||||+||||||||+|++|+||+|+.+|..|++||...+.....
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999876699999999886542211
Q ss_pred h---hhhHH----------------------hHhhHHHHHHHHHHHH---HHHHhhcCCCCCCCCH-HHHHHHHHHHHHH
Q 028296 81 S---SHYEK----------------------MLENLGAVEQVNRILK---KQIRQRMGESLNDLTL-EELTGLEQDILDG 131 (211)
Q Consensus 81 ~---~~~e~----------------------lq~el~kLk~~~~~L~---~~ir~~~Ge~L~~Ls~-~EL~~LE~~Le~~ 131 (211)
. ..... .......+....+.+. ...+++.|+++.+++. .+|..++.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 0 00000 1111222333333333 2357888999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhhhhHH
Q 028296 132 LKIIHECKDQVLARQIN-TFKRKVRGVQ 158 (211)
Q Consensus 132 L~~Ir~RK~~ll~~qi~-~l~kk~~~l~ 158 (211)
+..++..+...+.+++. .++.+...+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (195)
T KOG0014|consen 161 LHNSRSSKSKPLSDSNFQVLQEKEKSLE 188 (195)
T ss_pred hcCCCCCCCcCCcchhhhhhcccchhcc
Confidence 99999999988887776 4444444333
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=1.5e-34 Score=201.51 Aligned_cols=77 Identities=62% Similarity=0.998 Sum_probs=73.4
Q ss_pred CccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhhccccc
Q 028296 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLW 80 (211)
Q Consensus 2 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~~~~~ 80 (211)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|+|+||+ +++||+||.+.++.++|
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s--~~~vl~ry~~~~~~~~~ 77 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS--MEKIIERYQKTSGSSLW 77 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCC--HHHHHHHHHhccccccC
Confidence 899999999999999999999999999999999999999999999999999999999986 59999999998876654
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=1.5e-31 Score=189.02 Aligned_cols=74 Identities=42% Similarity=0.685 Sum_probs=70.7
Q ss_pred CccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhhc
Q 028296 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (211)
Q Consensus 2 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~ 76 (211)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+++.|++++. +..++++|...+.
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~ 74 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSA 74 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCH
Confidence 8999999999999999999999999999999999999999999999999999999988874 9999999988764
No 4
>smart00432 MADS MADS domain.
Probab=99.97 E-value=2.6e-31 Score=175.22 Aligned_cols=59 Identities=68% Similarity=1.042 Sum_probs=58.2
Q ss_pred CccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCC
Q 028296 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60 (211)
Q Consensus 2 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp 60 (211)
||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||+|||||+|+++.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999987
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=1.9e-30 Score=171.24 Aligned_cols=59 Identities=64% Similarity=1.014 Sum_probs=57.8
Q ss_pred CccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCC
Q 028296 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISP 60 (211)
Q Consensus 2 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp 60 (211)
||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||+|||||+|+++.|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999999999875
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.94 E-value=1.8e-28 Score=156.69 Aligned_cols=51 Identities=51% Similarity=0.812 Sum_probs=46.8
Q ss_pred eeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccC
Q 028296 9 KRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59 (211)
Q Consensus 9 ~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~s 59 (211)
|+|+|++.|++||+||+.||||||+|||+||||+||+|||||+|++|.|+|
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 589999999999999999999999999999999999999999999999975
No 7
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.83 E-value=5.9e-20 Score=134.37 Aligned_cols=98 Identities=38% Similarity=0.614 Sum_probs=94.9
Q ss_pred HhhhhccccchhhhHHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028296 71 YQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTF 150 (211)
Q Consensus 71 Y~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l 150 (211)
|.+.++.+.|...++.++.++.+++.+++.|+..+|+++|++|++||++||..||.+|+.+|..||+||.+++.++|+.|
T Consensus 1 Y~~~~~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l 80 (100)
T PF01486_consen 1 YQKQSGTDLWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEEL 80 (100)
T ss_pred CCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHH
Q 028296 151 KRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 151 ~kk~~~l~een~~L~~~~ 168 (211)
++|++.+.++|..|+.++
T Consensus 81 ~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 81 KKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999987
No 8
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.78 E-value=3.9e-20 Score=154.95 Aligned_cols=60 Identities=43% Similarity=0.661 Sum_probs=58.8
Q ss_pred CccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCc
Q 028296 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61 (211)
Q Consensus 2 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~ 61 (211)
||.||+|++|+|+..|.|||||||.||||||+|||||+|.+|-|+|.|.+|-+|.|+.|.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpK 122 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPK 122 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccc
Confidence 799999999999999999999999999999999999999999999999999999999985
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.49 E-value=1.7e-14 Score=126.26 Aligned_cols=61 Identities=38% Similarity=0.586 Sum_probs=59.9
Q ss_pred CCccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCc
Q 028296 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPS 61 (211)
Q Consensus 1 MgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~ 61 (211)
|||+|+.|..|+|+.+|.|||+||+.||+|||+||+||.|.+|.++|.|.+|.++.|+.|.
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~ 141 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPK 141 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCc
Confidence 7899999999999999999999999999999999999999999999999999999999985
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=91.70 E-value=1.6 Score=29.76 Aligned_cols=47 Identities=26% Similarity=0.367 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 028296 116 LTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDG 167 (211)
Q Consensus 116 Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~ 167 (211)
+|++.+..||..+..++..|..= ..++..|+.+...|.++|..|...
T Consensus 1 M~~E~l~~LE~ki~~aveti~~L-----q~e~eeLke~n~~L~~e~~~L~~e 47 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALL-----QMENEELKEKNNELKEENEELKEE 47 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 47889999999999999988653 445566666655555555554443
No 11
>PRK04098 sec-independent translocase; Provisional
Probab=88.44 E-value=0.54 Score=36.98 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=21.7
Q ss_pred eEEEEEecCCCccccccCCcchhHHHHHHHhhhh
Q 028296 42 KVSILICSSTAKAHEYISPSTTTKQLLDLYQKTL 75 (211)
Q Consensus 42 eva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~ 75 (211)
=||||||+| ++++..+- ++-..+..|++..
T Consensus 14 vVaLlvfGP-~KLP~~~r---~lGk~ir~~K~~~ 43 (158)
T PRK04098 14 VVAIIFLGP-DKLPQAMV---DIAKFFKAVKKTI 43 (158)
T ss_pred HHHHhhcCc-hHHHHHHH---HHHHHHHHHHHHH
Confidence 378999999 58888764 4566777777654
No 12
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=86.45 E-value=1.8 Score=28.22 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 141 QVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 141 ~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+.+.++|..|..+...|+.||..|+...
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4667888888888888999988888765
No 13
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.35 E-value=23 Score=31.06 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=46.9
Q ss_pred HHHHHHHHhhc--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 99 RILKKQIRQRM--GESLNDLTLEELTGLEQDILDGLKIIHECKDQVL--ARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 99 ~~L~~~ir~~~--Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll--~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
..|+.++.++. -.+++.++.++|..+-..|..-...|...+.++- .+++..+..++....+.-..+...+
T Consensus 182 ~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I 255 (312)
T smart00787 182 DALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEI 255 (312)
T ss_pred HHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 3568899999999999999888888877665543 3455566666666666656666665
No 14
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=85.05 E-value=4.6 Score=29.70 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Q 028296 142 VLARQINTFKRKVRGVQKENKSLQD 166 (211)
Q Consensus 142 ll~~qi~~l~kk~~~l~een~~L~~ 166 (211)
.+.+||..|..+...|++||.-|+.
T Consensus 71 ~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 71 VLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555566666555544
No 15
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.75 E-value=21 Score=29.38 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 139 KDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 139 K~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
..+-+.+++..++.+...|+.+|..+....
T Consensus 140 ~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444557777888888888888887777665
No 16
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=84.21 E-value=2.7 Score=27.52 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=27.0
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028296 107 QRMGESLNDLTLEELTGLEQDILDGLKIIHECK 139 (211)
Q Consensus 107 ~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK 139 (211)
+..|+||+.||++||..--..|+.-+.+++.-.
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999998888887777776643
No 17
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=83.77 E-value=10 Score=28.37 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=46.6
Q ss_pred hhHHhHhhHHHHHHHHHHHHHHHHhhcC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028296 83 HYEKMLENLGAVEQVNRILKKQIRQRMG----ESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKV 154 (211)
Q Consensus 83 ~~e~lq~el~kLk~~~~~L~~~ir~~~G----e~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~ 154 (211)
.++.|..++.+|+-+|..|++.+++-.| .+-.-|+..+=..+-...-.+|...-.+| |...+..+-.+.
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~K---Ie~kVr~~t~~~ 76 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKK---IEAKVRKLTAKL 76 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhh
Confidence 3578889999999999999999999887 66778899888777766666666655554 444444444443
No 18
>PHA03155 hypothetical protein; Provisional
Probab=83.37 E-value=13 Score=27.67 Aligned_cols=57 Identities=21% Similarity=0.196 Sum_probs=44.5
Q ss_pred hhHHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 028296 83 HYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECK 139 (211)
Q Consensus 83 ~~e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK 139 (211)
..|.|..++.+|+-+|..|++.+++-.+++=.-|+..+=..+-...-.+|...-++|
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK 65 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999999998766666577898888877777766666655554
No 19
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.67 E-value=12 Score=26.00 Aligned_cols=43 Identities=23% Similarity=0.412 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 028296 116 LTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKS 163 (211)
Q Consensus 116 Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~ 163 (211)
+|++=|.+||..+..++..|- ++.-+|+.|+.|...|.+++..
T Consensus 1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 477788999999998888875 4555667777766555554443
No 20
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=81.45 E-value=0.51 Score=24.96 Aligned_cols=12 Identities=17% Similarity=0.210 Sum_probs=9.9
Q ss_pred EEEecCCCcccc
Q 028296 45 ILICSSTAKAHE 56 (211)
Q Consensus 45 ~Iifs~~gkl~~ 56 (211)
+.+|||.|+++.
T Consensus 5 ~t~FSp~Grl~Q 16 (23)
T PF10584_consen 5 ITTFSPDGRLFQ 16 (23)
T ss_dssp TTSBBTTSSBHH
T ss_pred ceeECCCCeEEe
Confidence 458999999985
No 21
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=78.87 E-value=43 Score=29.32 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=43.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 111 ESLNDLTLEELTGLEQDILDGLKIIHECKDQVL--ARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 111 e~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll--~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
..++.++.++|..+-..|...-..|.++|..+- ..++..++.++..+.++...+...+
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999888888877666553 3556666666666666666666665
No 22
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=78.54 E-value=31 Score=27.25 Aligned_cols=55 Identities=16% Similarity=0.293 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 113 LNDLTLEELTGLEQDILDGLK---IIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 113 L~~Ls~~EL~~LE~~Le~~L~---~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
...|++++...+-+.+..... .++.. .+.+.+++..|+.+...|+.++..|.+++
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e-~~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKE-NERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999998888886533 23332 34457788889999999999999998887
No 23
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=76.39 E-value=63 Score=29.72 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=30.0
Q ss_pred hhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhh
Q 028296 24 RRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (211)
Q Consensus 24 Rr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~ 74 (211)
--++|+|+- .|.+ -.-+-+++|+++|++..|.+ +.+||..|-.+
T Consensus 283 ~~~~L~k~~-~L~~--~~~~Nm~~~d~~g~~~~~~~----~~~Il~~f~~~ 326 (439)
T PHA02592 283 THEKIMKDF-GLIE--RVSQNITVINENGKLKVYEN----AEDLIRDFVEI 326 (439)
T ss_pred HHHHHHHhc-Cchh--eeeeeEEEEecCCeeeecCC----HHHHHHHHHHH
Confidence 335666543 3332 23477888999999998854 57999999765
No 24
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=76.22 E-value=60 Score=30.11 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=37.7
Q ss_pred HhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 028296 86 KMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQ 165 (211)
Q Consensus 86 ~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~ 165 (211)
.++.++..+..+|+.|..+...+. .....+.+++..++...|. -+.++.+.|+.....++.....|.
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~---------~r~~~id~~i~~av~~~~~----~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQ---------KREQSIDQQIQQAVQSETQ----ELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------HhhhhHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666555443221 1223344556666655543 234456666666666666666676
Q ss_pred HHH
Q 028296 166 DGF 168 (211)
Q Consensus 166 ~~~ 168 (211)
+++
T Consensus 137 ~~l 139 (472)
T TIGR03752 137 RRL 139 (472)
T ss_pred HHH
Confidence 666
No 25
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.90 E-value=18 Score=28.35 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=29.7
Q ss_pred hHHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028296 84 YEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVL 143 (211)
Q Consensus 84 ~e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll 143 (211)
+..+++++..++.++..|+.++..+. ..++.+||...-..|..-+..+.+|-..+-
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544433 345666666666666665555555554443
No 26
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=75.38 E-value=53 Score=31.41 Aligned_cols=73 Identities=16% Similarity=0.280 Sum_probs=41.2
Q ss_pred hHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhHHHHH
Q 028296 87 MLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIH-----ECKDQVLARQINTFKRKVRGVQKEN 161 (211)
Q Consensus 87 lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir-----~RK~~ll~~qi~~l~kk~~~l~een 161 (211)
+...+++|..+|..|+..+..+. .++..|+..|+..-..++ .|+.+.+...|..|+++..+-...-
T Consensus 427 ~~~~ve~l~~e~~~L~~~~ee~k---------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 427 LEETVERLEEENSELKRELEELK---------REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666655544333 566666666665555443 3445556677777777766555555
Q ss_pred HHHHHHH
Q 028296 162 KSLQDGF 168 (211)
Q Consensus 162 ~~L~~~~ 168 (211)
..|..++
T Consensus 498 e~L~~~l 504 (652)
T COG2433 498 EELERKL 504 (652)
T ss_pred HHHHHHH
Confidence 5555544
No 27
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.66 E-value=24 Score=23.94 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 028296 116 LTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSL 164 (211)
Q Consensus 116 Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L 164 (211)
+|++=+..||..+..++..|. ++.-+|+.|+.|...|..+-..+
T Consensus 1 MSlEv~ekLE~KiqqAvdTI~-----LLQmEieELKEknn~l~~e~q~~ 44 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhHhHHHHHHH
Confidence 466777788877777776663 44555666666655444444433
No 28
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=74.40 E-value=48 Score=30.73 Aligned_cols=64 Identities=22% Similarity=0.381 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 96 QVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIH---ECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 96 ~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir---~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
..+++|+.++. +.-+|+.||-+||+. ++|+++..+- .-|.|+ ++.|+.++..|+.=.+.|+...
T Consensus 184 ~ilDeLr~Kl~--lnl~i~~lsteelr~---qVD~A~~q~VnP~k~KeQL----V~QLkTQItDLErFInFlQ~e~ 250 (621)
T KOG3759|consen 184 AILDELREKLE--LNLDIDKLSTEELRR---QVDDALKQLVNPFKEKEQL----VDQLKTQITDLERFINFLQDEV 250 (621)
T ss_pred HHHHHHHHHhh--ccCCcccccHHHHHH---HHHHHHHHHhChHHHHHHH----HHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444332 345699999999886 7788877663 335555 4578888888888878887776
No 29
>PHA03162 hypothetical protein; Provisional
Probab=74.18 E-value=37 Score=25.90 Aligned_cols=69 Identities=17% Similarity=0.156 Sum_probs=48.1
Q ss_pred hhHHhHhhHHHHHHHHHHHHHHHHhhcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028296 83 HYEKMLENLGAVEQVNRILKKQIRQRMGES----LNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKV 154 (211)
Q Consensus 83 ~~e~lq~el~kLk~~~~~L~~~ir~~~Ge~----L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~ 154 (211)
..|.|..++.+|+-+|..|++.+++-.|.+ =..|+..+=+.+-...-.+|...-.+| |...+..+--+.
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kK---Ie~KVr~~t~~~ 86 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKK---IEAKIRHETLKA 86 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhcc
Confidence 457888999999999999999998777665 234888877776666666666555544 444454444443
No 30
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=73.70 E-value=5.8 Score=29.25 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=12.8
Q ss_pred HHHHhhhhHHHHHHHHHHHH
Q 028296 149 TFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 149 ~l~kk~~~l~een~~L~~~~ 168 (211)
.+++|...|+|||+.|+-++
T Consensus 76 rlkkk~~~LeEENNlLklKi 95 (108)
T cd07429 76 RLKKKNQQLEEENNLLKLKI 95 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666777777666665
No 31
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=73.69 E-value=26 Score=25.87 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 118 LEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 118 ~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++.+.+||+++...+..+.+-|. ++..+-+....|+-||..|+.++
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~-----~~~el~EEN~~L~iEN~~Lr~~l 52 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKK-----QLAELLEENTALRLENDKLRERL 52 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888877777766553 34456666777888888888888
No 32
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=73.54 E-value=42 Score=26.28 Aligned_cols=55 Identities=18% Similarity=0.177 Sum_probs=42.2
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028296 85 EKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKD 140 (211)
Q Consensus 85 e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~ 140 (211)
+.+...+..+..++..++..+..+.+ +-...|.+|...++.......+..+.||.
T Consensus 112 ~el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 112 EELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677777777777777766665 44558899999999999998888888874
No 33
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=72.55 E-value=29 Score=25.47 Aligned_cols=45 Identities=24% Similarity=0.361 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 119 EELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 119 ~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+.+..||++|..-+..|.+=| .++..|-+....|.-||..|+.++
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK-----~~~~~l~EEN~~L~~EN~~Lr~~l 52 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELK-----KQLQELLEENARLRIENEHLRERL 52 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777776666665544 334455555666777788888887
No 34
>PRK01919 tatB sec-independent translocase; Provisional
Probab=72.22 E-value=12 Score=29.71 Aligned_cols=28 Identities=14% Similarity=0.211 Sum_probs=18.4
Q ss_pred EEEEEecCCCccccccCCcchhHHHHHHHhhh
Q 028296 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (211)
Q Consensus 43 va~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~ 74 (211)
||||||+| .+|+..+- ++-..+.++++.
T Consensus 15 VALiV~GP-ekLP~~aR---tlGk~i~k~Rr~ 42 (169)
T PRK01919 15 VALVVIGP-ERLPRVAR---TAGALFGRAQRY 42 (169)
T ss_pred HHHheeCc-hHhHHHHH---HHHHHHHHHHHH
Confidence 78999999 57776643 344555555543
No 35
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=71.83 E-value=27 Score=27.55 Aligned_cols=44 Identities=25% Similarity=0.292 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhHHHH
Q 028296 117 TLEELTGLEQDILDGLKIIHEC---KDQVLARQINTFKRKVRGVQKE 160 (211)
Q Consensus 117 s~~EL~~LE~~Le~~L~~Ir~R---K~~ll~~qi~~l~kk~~~l~ee 160 (211)
+..+|..|-++++.+-..+|++ |-.+|.+||..|+++-+.+.++
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile~ 74 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILEE 74 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999888888765 6677788888888777666554
No 36
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=71.75 E-value=57 Score=27.06 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 116 LTLEELTGLEQDILDGLKIIHECK--DQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 116 Ls~~EL~~LE~~Le~~L~~Ir~RK--~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
-..+++..|+..++..-....... ...+..|.+.++..-..|-++|+.|+.++
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 345567777777666544443322 23344556666666667777777777777
No 37
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=69.75 E-value=38 Score=29.61 Aligned_cols=87 Identities=18% Similarity=0.321 Sum_probs=52.4
Q ss_pred hhHHhHhhHHHHHHHHHHHHHHHHhhc--------------CCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 028296 83 HYEKMLENLGAVEQVNRILKKQIRQRM--------------GESLNDLT--LEELTGLEQDILDGLKIIHECKDQV--LA 144 (211)
Q Consensus 83 ~~e~lq~el~kLk~~~~~L~~~ir~~~--------------Ge~L~~Ls--~~EL~~LE~~Le~~L~~Ir~RK~~l--l~ 144 (211)
+++.++..+..|.++|..|+.+..++. -+++..|+ -.++..|...|............++ +.
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~Ll 240 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLL 240 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888887776654433 22222221 1234444444444444443333333 23
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Q 028296 145 RQINTFKRKVRGVQKENKSLQDGFI 169 (211)
Q Consensus 145 ~qi~~l~kk~~~l~een~~L~~~~~ 169 (211)
.||-.+++|.+.+--||..|...+.
T Consensus 241 sqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 241 SQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5778888888888888888888773
No 38
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=69.68 E-value=40 Score=24.50 Aligned_cols=44 Identities=18% Similarity=0.367 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 124 LEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 124 LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++...+.++..+..|+..+ ...|+.+.++...+++....+...+
T Consensus 61 v~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred heecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666665544 6667777777777777777777666
No 39
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=69.66 E-value=43 Score=30.83 Aligned_cols=27 Identities=7% Similarity=0.263 Sum_probs=21.4
Q ss_pred EEEEecCCCccccccCCcchhHHHHHHHhhhh
Q 028296 44 SILICSSTAKAHEYISPSTTTKQLLDLYQKTL 75 (211)
Q Consensus 44 a~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~ 75 (211)
-+++|.++|++..| + +.+||..|-.+-
T Consensus 302 Nm~~~~~~g~p~~~-~----l~~iL~~f~~~R 328 (445)
T cd00187 302 NMVAFDPNGRPKKL-N----LKEILQEFLDHR 328 (445)
T ss_pred eEEEEecCCeeEEe-C----HHHHHHHHHHHH
Confidence 67778889999888 3 578999997653
No 40
>PRK01371 sec-independent translocase; Provisional
Probab=69.56 E-value=2.6 Score=32.37 Aligned_cols=53 Identities=17% Similarity=0.335 Sum_probs=30.1
Q ss_pred eEEEEEecCCCccccccCCcchhHHHHHHHhhhhccccchhhhHHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHH
Q 028296 42 KVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEEL 121 (211)
Q Consensus 42 eva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL 121 (211)
=|+||||+| .|+++++- .+-+.+..|++. ....+.+++.-+|.+++++.+.+|
T Consensus 14 vVallvfGP-eKLP~~ar---~lg~~ir~~R~~-----------------------~~~ak~~i~~Elg~ef~d~d~r~l 66 (137)
T PRK01371 14 VLAVLVFGP-DKLPKAAR---DAGRTLRQLREM-----------------------ANNARNDLRSELGPEFADLDLRDL 66 (137)
T ss_pred HHHhheeCc-hHHHHHHH---HHHHHHHHHHHH-----------------------HHHHHHHHHHHhcchhcccchhhc
Confidence 367899999 57777643 333444444332 223334445556777777755444
No 41
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=68.52 E-value=68 Score=29.88 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 028296 114 NDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQ 165 (211)
Q Consensus 114 ~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~ 165 (211)
+..++.++.++-..+...+..++.+...+ ..++..++++...|+.+...|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 122 NEPDLKEWFQAFDFNGSEIERLLTEDREA-ERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 36688999999999988888888776544 4556666666666665555443
No 42
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=67.97 E-value=92 Score=29.52 Aligned_cols=24 Identities=17% Similarity=0.367 Sum_probs=13.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 145 RQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 145 ~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.+...+..++..|+++...|..+.
T Consensus 213 ~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 213 EQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666665555544
No 43
>PRK09343 prefoldin subunit beta; Provisional
Probab=67.16 E-value=50 Score=24.60 Aligned_cols=41 Identities=22% Similarity=0.238 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 127 DILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 127 ~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
..+.+...|..|+.- +...|..|.++...+++....+...+
T Consensus 68 d~~e~~~~l~~r~E~-ie~~ik~lekq~~~l~~~l~e~q~~l 108 (121)
T PRK09343 68 DKTKVEKELKERKEL-LELRSRTLEKQEKKLREKLKELQAKI 108 (121)
T ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555433 35778888888888888888777777
No 44
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=66.12 E-value=12 Score=27.63 Aligned_cols=45 Identities=11% Similarity=0.321 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 124 LEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 124 LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+...++.++.-|...-+-...++++.|+.+++.|.+.|..|.+.-
T Consensus 46 IDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN 90 (123)
T KOG4797|consen 46 IDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALEREN 90 (123)
T ss_pred echHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666667666666667999999999999999999998765
No 45
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=65.52 E-value=81 Score=26.46 Aligned_cols=12 Identities=8% Similarity=0.207 Sum_probs=7.0
Q ss_pred CCccccccCCcc
Q 028296 51 TAKAHEYISPST 62 (211)
Q Consensus 51 ~gkl~~~~sp~~ 62 (211)
..+...||..++
T Consensus 7 ~~~~~~~C~~C~ 18 (302)
T PF10186_consen 7 NSRRRFYCANCV 18 (302)
T ss_pred CCCCCeECHHHH
Confidence 345556777664
No 46
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=65.09 E-value=31 Score=22.39 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 131 GLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 131 ~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+-...|.||... +..|..++..|..+|..|...+
T Consensus 16 AAr~~R~RKk~~----~~~Le~~~~~L~~en~~L~~~~ 49 (64)
T PF00170_consen 16 AARRSRQRKKQY----IEELEEKVEELESENEELKKEL 49 (64)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777444 5577777878888887777766
No 47
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=64.78 E-value=42 Score=22.88 Aligned_cols=63 Identities=14% Similarity=0.168 Sum_probs=33.0
Q ss_pred cCCcchhHHHHHHHhhhhccccchhhhHHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCC--CHHHHHHHHHH
Q 028296 58 ISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDL--TLEELTGLEQD 127 (211)
Q Consensus 58 ~sp~~~~~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~L--s~~EL~~LE~~ 127 (211)
.+|+.+++..+..+..... ...+..-..+|..++.....+++.+.|.+-.++ ..+++..++..
T Consensus 2 ~~~~fd~~~~~~~~l~~~s-------~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~ 66 (87)
T PF08700_consen 2 DSENFDVDEYFKDLLKNSS-------IKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMEND 66 (87)
T ss_pred CCCcCCHHHHHHHHHhhCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4555566666665544322 233444445566666666777777776644333 33444444443
No 48
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=62.90 E-value=29 Score=22.27 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSL 164 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L 164 (211)
|+|++|+..+-..-+..-....... .++.++++.+.++...|+.--..|
T Consensus 14 GfsL~eI~~~l~l~~~~~~~~~~~~-~~l~~~~~~i~~~i~~L~~~~~~L 62 (65)
T PF09278_consen 14 GFSLEEIRELLELYDQGDPPCADRR-ALLEEKLEEIEEQIAELQALRAQL 62 (65)
T ss_dssp T--HHHHHHHHHHCCSHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888887733222222222222 566666666666666655544433
No 49
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=61.72 E-value=7.8 Score=30.03 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=25.7
Q ss_pred CCeEEEEEecCCCccccccCCcchhHHHHHHHhhh
Q 028296 40 DAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (211)
Q Consensus 40 daeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~ 74 (211)
...++-||+ ++|++.+|.+| +++.+|+..|=.+
T Consensus 14 ~~~~vkvv~-~~G~v~~~~~p-v~a~evm~~~P~h 46 (181)
T PF14009_consen 14 SAATVKVVH-PDGKVEEFKRP-VTAAEVMLENPGH 46 (181)
T ss_pred CCceEEEEc-CCCcEEEeCCC-cCHHHHHHHCCCC
Confidence 445555555 78999999998 5899999999655
No 50
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=60.82 E-value=52 Score=26.70 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 028296 139 KDQVLARQINTFKRKVRGVQKENKSLQD 166 (211)
Q Consensus 139 K~~ll~~qi~~l~kk~~~l~een~~L~~ 166 (211)
+-+.-..+|..|+.-...|+++|..|+.
T Consensus 49 rlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 49 RLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555555555566655544
No 51
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=59.63 E-value=73 Score=23.94 Aligned_cols=41 Identities=17% Similarity=0.401 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 127 DILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 127 ~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.|+.+-..--.+|. .+..++..++++...|...|+.|..+|
T Consensus 88 ~l~~~e~sw~~qk~-~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 88 ELEESEASWEEQKE-QLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344443 457789999999999999999999998
No 52
>PRK10884 SH3 domain-containing protein; Provisional
Probab=59.43 E-value=62 Score=26.56 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 143 LARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 143 l~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+.++...|+++...++.++..|..++
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666665555
No 53
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.76 E-value=2e+02 Score=29.20 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=38.2
Q ss_pred hhhHHhHhhHHHHHHHHHHHHHHHHhh------cCCCCCCCCHHHHHHHHH---HHHHHHHHHHH
Q 028296 82 SHYEKMLENLGAVEQVNRILKKQIRQR------MGESLNDLTLEELTGLEQ---DILDGLKIIHE 137 (211)
Q Consensus 82 ~~~e~lq~el~kLk~~~~~L~~~ir~~------~Ge~L~~Ls~~EL~~LE~---~Le~~L~~Ir~ 137 (211)
...+.||.++..+++.++.|..++.-+ .|.+....|.-++.+||+ .|.++|-+.|.
T Consensus 325 ERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 445678888888888888777654222 266666777777777775 56777776664
No 54
>PRK11637 AmiB activator; Provisional
Probab=58.64 E-value=1.4e+02 Score=26.97 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 120 ELTGLEQDILDGLKIIHECK--DQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 120 EL~~LE~~Le~~L~~Ir~RK--~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+|..++.+|...-..|+... ...+..+|..+++++..++++...+...+
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544443332 22234455555555555555554444444
No 55
>smart00338 BRLZ basic region leucin zipper.
Probab=58.15 E-value=45 Score=21.64 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 131 GLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 131 ~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+-...|.||.. .+..|..++..|..+|..|..++
T Consensus 16 aA~~~R~rKk~----~~~~Le~~~~~L~~en~~L~~~~ 49 (65)
T smart00338 16 AARRSRERKKA----EIEELERKVEQLEAENERLKKEI 49 (65)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666644 45578888888888888888777
No 56
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=55.99 E-value=48 Score=20.77 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 131 GLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 131 ~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+-..-|.||. ..+..|..++..|..+|..|..++
T Consensus 15 AA~r~R~rkk----~~~~~le~~~~~L~~en~~L~~~i 48 (54)
T PF07716_consen 15 AARRSRQRKK----QREEELEQEVQELEEENEQLRQEI 48 (54)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555553 335688888999999999998887
No 57
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=55.68 E-value=1.2e+02 Score=25.84 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 138 CKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 138 RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+..+.|..+|...++-+..+.++...|+..+
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV 216 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEV 216 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777778888888888877
No 58
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=55.32 E-value=58 Score=23.59 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-......-..+.. -..++.+++..+..+...|+.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIPE-RLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888766543322122222 245667777777777777777766666655
No 59
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=54.57 E-value=1.1e+02 Score=24.53 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=27.7
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 028296 85 EKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKD 140 (211)
Q Consensus 85 e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~ 140 (211)
+.||+++..|+++....+..+..+. ......+++|-.+.+..-+...+.-|.||.
T Consensus 119 eemQe~i~~L~kev~~~~erl~~~k-~g~~~vtpedk~~v~~~y~~~~~~wrk~kr 173 (201)
T KOG4603|consen 119 EEMQEEIQELKKEVAGYRERLKNIK-AGTNHVTPEDKEQVYREYQKYCKEWRKRKR 173 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544444444333322 234455666666666666666555555554
No 60
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=54.56 E-value=21 Score=23.87 Aligned_cols=26 Identities=23% Similarity=0.569 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 143 LARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 143 l~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+..++..++++...+..+|..|..++
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888888877
No 61
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=53.76 E-value=75 Score=22.28 Aligned_cols=25 Identities=16% Similarity=0.433 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 144 ARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 144 ~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
..+|+.++++.+.+.++-..+...+
T Consensus 75 ~~~i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 75 EKEIKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777776666
No 62
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=53.49 E-value=32 Score=25.22 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 131 GLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 131 ~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.+..+-. ....+.+++..|+..+..+.+||..|+-.-
T Consensus 9 ~l~~le~-~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN 45 (107)
T PF06156_consen 9 RLDQLEQ-QLGQLLEELEELKKQLQELLEENARLRIEN 45 (107)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433 334457789999999999999999998776
No 63
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=53.38 E-value=30 Score=25.23 Aligned_cols=25 Identities=12% Similarity=0.151 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 144 ARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 144 ~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.+++..++++...++++|..|..++
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI 57 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEI 57 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555554
No 64
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=52.15 E-value=2.2e+02 Score=28.06 Aligned_cols=111 Identities=11% Similarity=0.121 Sum_probs=57.8
Q ss_pred EEEEecCCCccccccCCcchhHHHHHHHhhhhc---cccchhhhHHhHhhHHHHH---HHHHHHHHHHHhhcCC-C----
Q 028296 44 SILICSSTAKAHEYISPSTTTKQLLDLYQKTLR---VDLWSSHYEKMLENLGAVE---QVNRILKKQIRQRMGE-S---- 112 (211)
Q Consensus 44 a~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~---~~~~~~~~e~lq~el~kLk---~~~~~L~~~ir~~~Ge-~---- 112 (211)
-+++|+++|++.. .++.+||..|-.+-- .........++++++..+. .....+..-+.-..+. +
T Consensus 337 n~~~~d~~~~p~~-----~~l~~il~~f~~~R~~~~~rr~~~~l~k~~~r~~~l~g~~~~~~~id~vI~iir~s~~ak~~ 411 (742)
T PRK05561 337 NMNAIGLDGRPRV-----KGLKEILSEWLDHRREVVTRRSQFRLDKVEKRLHILEGLLIAFLNIDEVIRIIRESDEPKAN 411 (742)
T ss_pred eEEEEccCCEEEE-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCccHHHH
Confidence 6778888888743 257899999976532 1111122233333332221 1111111111100000 0
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028296 113 -LNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKE 160 (211)
Q Consensus 113 -L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~ee 160 (211)
+..+.+.+ .+.+..|+..|.++..-....+.++++.|+++...++.-
T Consensus 412 l~~~f~~~~-~qa~~Il~m~L~~Lt~le~~kl~~E~~~l~~ei~~l~~i 459 (742)
T PRK05561 412 LMARFDLSE-IQAEAILELRLRRLAKLEEIEIRKEQDELRKEIAELEAI 459 (742)
T ss_pred HHHHhCCCH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112222 356667777888887777777778888888777766665
No 65
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=50.76 E-value=1.3e+02 Score=24.19 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=8.9
Q ss_pred HHHhhhhHHHHHHHHHHHH
Q 028296 150 FKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 150 l~kk~~~l~een~~L~~~~ 168 (211)
.+..+..|...|..|..++
T Consensus 168 ~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 168 HQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444555555544
No 66
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=49.03 E-value=1.9e+02 Score=25.44 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHhhhhHHHHHH
Q 028296 123 GLEQDILDGLKIIHECKDQVLA----R---QINTFKRKVRGVQKENK 162 (211)
Q Consensus 123 ~LE~~Le~~L~~Ir~RK~~ll~----~---qi~~l~kk~~~l~een~ 162 (211)
.|-..|...|..+|.-|..+=. + .+..|+++...|+.+-.
T Consensus 106 ~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~ 152 (310)
T PF09755_consen 106 FLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKS 152 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777788877765422 1 25667777776655443
No 67
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=48.89 E-value=55 Score=23.92 Aligned_cols=54 Identities=15% Similarity=0.073 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-...+..-...-..-..++.+++..+.++.+.++...+.|...+
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFE 109 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888887765544321111122235556666666666666666666655544
No 68
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=48.69 E-value=15 Score=27.09 Aligned_cols=27 Identities=22% Similarity=0.073 Sum_probs=21.8
Q ss_pred HHHHhhhcCCeEEEEEecCCCccccccC
Q 028296 32 ARELTILCDAKVSILICSSTAKAHEYIS 59 (211)
Q Consensus 32 A~ELSvLCdaeva~Iifs~~gkl~~~~s 59 (211)
-.+|..|-||- |+..||++|++.+|-.
T Consensus 3 l~~Lm~lpGv~-AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 3 LDKLMKLPGVV-AAGEFSDDGKLVEYKG 29 (108)
T ss_pred HHHhhcCCCeE-EEEEECCCCeEEeeec
Confidence 46777788874 5678999999999876
No 69
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=48.00 E-value=14 Score=33.10 Aligned_cols=41 Identities=27% Similarity=0.429 Sum_probs=27.2
Q ss_pred HHHhhhcCCeE--EEEEecCCCccccccCCcc---hhHHHHHHHhhhh
Q 028296 33 RELTILCDAKV--SILICSSTAKAHEYISPST---TTKQLLDLYQKTL 75 (211)
Q Consensus 33 ~ELSvLCdaev--a~Iifs~~gkl~~~~sp~~---~~~~ii~RY~~~~ 75 (211)
+-|||+||-+| |||--..+| |-|+.|-. ++++++..|+..+
T Consensus 367 yalSV~~~~~V~HClIy~tatG--~GFa~pyn~y~tlk~lV~hY~h~S 412 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATG--FGFAEPYNLYSTLKELVLHYQHTS 412 (464)
T ss_pred eEEEEEECCceeeeEEeecccc--ccccchhHHHHHHHHHHHHHhhhh
Confidence 45899998777 555444444 55666633 6778888887654
No 70
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=47.92 E-value=41 Score=29.08 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=31.2
Q ss_pred ceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhh
Q 028296 7 EMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQK 73 (211)
Q Consensus 7 ~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~ 73 (211)
.+..|.|.+.|..+=++ .||..|.+ ++| .|-+ ...|++|++.|..
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~n-DpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHN-DPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCC-cHHHHHHHHHHhH
Confidence 46788898888776332 47988886 455 2322 2379999999876
No 71
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=47.91 E-value=65 Score=21.83 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHH
Q 028296 141 QVLARQINTFKRKVRGVQKENKSLQD 166 (211)
Q Consensus 141 ~ll~~qi~~l~kk~~~l~een~~L~~ 166 (211)
+-..+.|..|+.++..|.++|..|..
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~ 39 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKE 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344455555555555555555543
No 72
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=47.04 E-value=1.1e+02 Score=22.47 Aligned_cols=46 Identities=15% Similarity=0.277 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 118 LEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 118 ~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++.+..||.+|-..+..+-.-|.++ ..|-.....|+=||..|+.++
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL 52 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERL 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHh
Confidence 4567888888888887777765444 344445666777888888888
No 73
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=46.71 E-value=19 Score=26.03 Aligned_cols=31 Identities=23% Similarity=0.101 Sum_probs=23.5
Q ss_pred HHHHHHhhhcCCeEEEEEecCCCccccccCCc
Q 028296 30 KKARELTILCDAKVSILICSSTAKAHEYISPS 61 (211)
Q Consensus 30 KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~ 61 (211)
.|..||--+-||= |.=.|||+||+.+|-++-
T Consensus 3 ekLdeLlqi~Gv~-AAGefs~DGkLv~Ykgdm 33 (109)
T COG4831 3 EKLDELLQIKGVM-AAGEFSPDGKLVEYKGDM 33 (109)
T ss_pred hhHHHHhCcccee-EeceeCCCCceEEeeCCC
Confidence 4567777777764 456799999999998863
No 74
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=46.70 E-value=15 Score=28.13 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=20.9
Q ss_pred HhhhcCCeEEEEEecCCCccccccC
Q 028296 35 LTILCDAKVSILICSSTAKAHEYIS 59 (211)
Q Consensus 35 LSvLCdaeva~Iifs~~gkl~~~~s 59 (211)
+.++|||+|-++|-|.+.+-..|+.
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~p 83 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFPP 83 (148)
T ss_pred HHHhhccceeeeeecccCccccCCc
Confidence 6788999999999999888777653
No 75
>PLN03128 DNA topoisomerase 2; Provisional
Probab=46.23 E-value=1.9e+02 Score=30.12 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=21.7
Q ss_pred EEEEecCCCccccccCCcchhHHHHHHHhhh
Q 028296 44 SILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (211)
Q Consensus 44 a~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~ 74 (211)
-+++|.+.|++..|.+ +.+||..|-.+
T Consensus 961 nm~l~d~~~~i~ky~~----~~~il~~f~~~ 987 (1135)
T PLN03128 961 NMHLFDKDGKIKKYDS----PEDILEEFFHL 987 (1135)
T ss_pred EEEEECCCCcccCCCC----HHHHHHHHHHH
Confidence 5778999999998865 46899999765
No 76
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=46.11 E-value=54 Score=28.69 Aligned_cols=106 Identities=14% Similarity=0.122 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhc-----CCeEEEEEecCCCc-----cccccCCcchhHHHHHHHhhhhccccchhhhHHhHhhHHHHHHH
Q 028296 28 LFKKARELTILC-----DAKVSILICSSTAK-----AHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQV 97 (211)
Q Consensus 28 L~KKA~ELSvLC-----daeva~Iifs~~gk-----l~~~~sp~~~~~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~ 97 (211)
||.+.+|.-+=- ++-|||+.|.+... .|.|-+ ---+.||...-... +.+++++++.++.+.++.
T Consensus 100 lie~~~e~LT~nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H-----~~ClaRyl~~~~~~-lrqe~q~~~~~~qh~~~~ 173 (368)
T KOG4445|consen 100 LIEHCSEFLTENNHPNGQCVICLYGFASSPAFTVTACDHYMH-----FACLARYLTECLTG-LRQEIQDAQKERQHMKEQ 173 (368)
T ss_pred HHHHHHHHcccCCCCCCceEEEEEeecCCCceeeehhHHHHH-----HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhh
Confidence 556666653321 45688998987431 222322 13467776543221 234555666666666666
Q ss_pred HHHHHHHHHhhcCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHH
Q 028296 98 NRILKKQIRQRMGESLNDLTL----EELTGLEQDILDGLKIIHECK 139 (211)
Q Consensus 98 ~~~L~~~ir~~~Ge~L~~Ls~----~EL~~LE~~Le~~L~~Ir~RK 139 (211)
-+.+..-.|...+.+.++|-. .++..+-...-.+|.....||
T Consensus 174 ~eavcpVcre~i~~e~~slk~a~~Pt~~l~~~~~~~eslrq~~~r~ 219 (368)
T KOG4445|consen 174 VEAVCPVCRERIKIEENSLKIAEFPTYPMELYQPSAESLRQQEERK 219 (368)
T ss_pred HhhhhhHhhhhccccccceeccCCCccccccCcccHHHHHHHHHHH
Confidence 666655566667766666532 233333334455555566666
No 77
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.05 E-value=69 Score=27.88 Aligned_cols=44 Identities=34% Similarity=0.421 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 028296 112 SLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSL 164 (211)
Q Consensus 112 ~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L 164 (211)
.-++||.+|-..|+ .||.||.+++ ++|+.|+..+....++...+
T Consensus 7 ep~~Ls~~E~~eL~--------~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 7 EPNDLSEEERMELE--------NIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCCCHHHHHhHH--------HHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 35688888887766 5999998885 56888888888777766554
No 78
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=45.51 E-value=1.3e+02 Score=22.72 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=8.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHH
Q 028296 117 TLEELTGLEQDILDGLKIIHE 137 (211)
Q Consensus 117 s~~EL~~LE~~Le~~L~~Ir~ 137 (211)
.+++...+-..+.+-+..|+.
T Consensus 76 klDe~~ei~~~i~~eV~~v~~ 96 (126)
T PF07889_consen 76 KLDEQKEISKQIKDEVTEVRE 96 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444433333
No 79
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.56 E-value=1.7e+02 Score=23.32 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 139 KDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 139 K~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+.....++++.++++....+.+...|+++.
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567778888888888888888888877
No 80
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=41.97 E-value=63 Score=23.84 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 131 GLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 131 ~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++..+-.. ...+..++..|+..+..+.+||..|+-.-
T Consensus 9 ~l~~le~~-l~~l~~el~~LK~~~~el~EEN~~L~iEN 45 (110)
T PRK13169 9 ALDDLEQN-LGVLLKELGALKKQLAELLEENTALRLEN 45 (110)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344332 33456778999999999999999997764
No 81
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=41.86 E-value=72 Score=24.42 Aligned_cols=54 Identities=6% Similarity=0.072 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++++..+-..+...-...-.....++.+++..+.++...|+.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999888776543221111122234667777888888888877777776666
No 82
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=41.51 E-value=34 Score=29.93 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Q 028296 146 QINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 146 qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+++.|++|.+.|++||..|+...
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea 183 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEA 183 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999876
No 83
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=41.40 E-value=1.3e+02 Score=27.91 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 141 QVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 141 ~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+++..+...++.|++.++.+|..|+.++
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455666778888889999999999998
No 84
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=41.34 E-value=80 Score=22.75 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 139 KDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 139 K~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.-|+..++..-|+++...++++|..|..++
T Consensus 9 qLqFvEEEa~LlRRkl~ele~eN~~l~~EL 38 (96)
T PF11365_consen 9 QLQFVEEEAELLRRKLSELEDENKQLTEEL 38 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999988
No 85
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=41.10 E-value=68 Score=26.44 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=33.2
Q ss_pred HHHHHHHHhhhcCCeEEEEEecCC---CccccccCCcchhHHHHHHHhhh
Q 028296 28 LFKKARELTILCDAKVSILICSST---AKAHEYISPSTTTKQLLDLYQKT 74 (211)
Q Consensus 28 L~KKA~ELSvLCdaeva~Iifs~~---gkl~~~~sp~~~~~~ii~RY~~~ 74 (211)
|-.=..|++|=+|-+++|++.+|+ +....|+.. -++.|+..|...
T Consensus 41 l~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~--pL~~vv~~~~~~ 88 (214)
T PF10491_consen 41 LRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAA--PLENVVRNLKPV 88 (214)
T ss_pred HHHHHHHHHHhhhceeEEEEecCCCCCCceeeecch--hHHHHHHHHHHH
Confidence 333457999999999999999983 333456653 468899988764
No 86
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=41.08 E-value=1.3e+02 Score=21.53 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=35.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 112 SLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 112 ~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
..+.++++++. ++.-......+++.|..+...++.+|..|...+
T Consensus 60 ~~~~l~P~~~i-------------~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i 103 (109)
T PF03980_consen 60 WRHSLTPEEDI-------------RAHLAPYKKKEREQLNARLQELEEENEALAEEI 103 (109)
T ss_pred CCCCCChHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888764 444555557778899999999999999999998
No 87
>smart00338 BRLZ basic region leucin zipper.
Probab=40.83 E-value=96 Score=20.03 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 139 KDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 139 K~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+-+.+..++..|+.++..|..++..|...+
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456677778888888888888877655
No 88
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=40.43 E-value=2e+02 Score=23.42 Aligned_cols=89 Identities=12% Similarity=0.241 Sum_probs=48.7
Q ss_pred HHHHHHHhhhhccccchhhhHHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028296 65 KQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLA 144 (211)
Q Consensus 65 ~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~ 144 (211)
.+++|.|...++.+.-...+...+..++.- -+..+.++ +.|...+|.+.. .+....-.+.+.+.
T Consensus 9 ~~~~D~Y~~~~~~~~Eh~~f~~Ak~rLe~~------hr~r~~~V---------mkeW~eaE~~~~-~l~~~DPk~Ae~~k 72 (193)
T PF12925_consen 9 SDAVDPYFEHPDPENEHQRFKEAKERLEEK------HRERMTKV---------MKEWSEAEERYK-ELPKADPKKAEQFK 72 (193)
T ss_dssp --HHHHHHHSSTTSTHHHHHHHHHHHHHHH------HHHHHHHH---------HHHHHHHHHTTT-TSHHHHHHHHHHHH
T ss_pred CCCCChHhhcCCCCchHHHHHHHHHHHHHH------HHHHHHHH---------HHHHHHHHHHHH-hchhhhhhhhhHHH
Confidence 467799999887553223333333333221 11111111 134455555444 33445555555555
Q ss_pred HHH-HHHHHhhhhHHHHHHHHHHHHH
Q 028296 145 RQI-NTFKRKVRGVQKENKSLQDGFI 169 (211)
Q Consensus 145 ~qi-~~l~kk~~~l~een~~L~~~~~ 169 (211)
..+ ...++++..|++++..-+++++
T Consensus 73 ~~m~~rFQ~~v~aLE~e~~~er~qL~ 98 (193)
T PF12925_consen 73 KEMTQRFQKTVQALEQEAAAERQQLV 98 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 5688889999999988888874
No 89
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=40.42 E-value=1.2e+02 Score=21.76 Aligned_cols=48 Identities=17% Similarity=0.295 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|+.|+..+-..... ..-..++.+++..+.++...++.....|...+
T Consensus 58 G~sl~~i~~l~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 58 GFPLEEIKEILDADND------DELRKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred CCCHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888887654432 44455666666666666666666665555544
No 90
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=39.87 E-value=1.5e+02 Score=21.75 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKII--HECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~I--r~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
|+|++++..+-...+..-... ......++.+++..+..+...++.....|...+
T Consensus 55 G~~L~~I~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~ 110 (118)
T cd04776 55 GFSLEEIRELLDLYDPPGGNRKQLEKMLEKIEKRRAELEQQRRDIDAALAELDAAE 110 (118)
T ss_pred CCCHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777665544321111 122335667777777777777777666666555
No 91
>PRK01770 sec-independent translocase; Provisional
Probab=39.55 E-value=28 Score=27.76 Aligned_cols=28 Identities=4% Similarity=0.143 Sum_probs=18.2
Q ss_pred EEEEEecCCCccccccCCcchhHHHHHHHhhh
Q 028296 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (211)
Q Consensus 43 va~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~ 74 (211)
||||||+| .+|+...- ++-..+.++++.
T Consensus 15 VaLlV~GP-erLP~~~r---~lg~~i~~~R~~ 42 (171)
T PRK01770 15 IGLVVLGP-QRLPVAVK---TVAGWIRALRSL 42 (171)
T ss_pred HHHHhcCc-hHHHHHHH---HHHHHHHHHHHH
Confidence 68899999 47776643 344555566554
No 92
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=39.08 E-value=1.2e+02 Score=22.65 Aligned_cols=53 Identities=9% Similarity=0.242 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-...+..-... .....++.+++..+.++...++.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPC-PMVRRLIEQRLAETERRIKELLKLRDRMQQAV 109 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888765433221111 12235677778888888888877777776666
No 93
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=38.97 E-value=28 Score=30.31 Aligned_cols=30 Identities=13% Similarity=0.392 Sum_probs=20.9
Q ss_pred hhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhhc
Q 028296 37 ILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (211)
Q Consensus 37 vLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~ 76 (211)
+||.+|.=.-.|.++ | .|++|++.|.+.+.
T Consensus 20 ~LcECely~snYDND--------P--eMK~Vme~F~rqTs 49 (299)
T PF02009_consen 20 SLCECELYTSNYDND--------P--EMKSVMENFDRQTS 49 (299)
T ss_pred chhhhcccccCCCCc--------H--HHHHHHHHHHHHHH
Confidence 578877654444443 3 69999999987664
No 94
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=38.65 E-value=2.7e+02 Score=24.91 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH
Q 028296 141 QVLARQINTFKRKVRGVQKENKSLQ 165 (211)
Q Consensus 141 ~ll~~qi~~l~kk~~~l~een~~L~ 165 (211)
.+..++|..++.+...|+++.+.|.
T Consensus 79 ema~~Ei~~~~~~~~~le~~L~~lL 103 (363)
T COG0216 79 EMAEEEIKELEAKIEELEEELKILL 103 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566788888888888888877763
No 95
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=38.64 E-value=1.1e+02 Score=24.41 Aligned_cols=18 Identities=39% Similarity=0.435 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028296 120 ELTGLEQDILDGLKIIHE 137 (211)
Q Consensus 120 EL~~LE~~Le~~L~~Ir~ 137 (211)
||++||.+|++.+..|++
T Consensus 160 ElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 160 ELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 566666666666665553
No 96
>PRK00708 sec-independent translocase; Provisional
Probab=38.41 E-value=44 Score=27.59 Aligned_cols=28 Identities=11% Similarity=0.150 Sum_probs=17.2
Q ss_pred EEEEEecCCCccccccCCcchhHHHHHHHhhh
Q 028296 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (211)
Q Consensus 43 va~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~ 74 (211)
|+||||+| .+|....- ++-..+.++++.
T Consensus 15 VaLvV~GP-krLP~~~R---~lGk~v~k~R~~ 42 (209)
T PRK00708 15 VLIVVVGP-KDLPPMLR---AFGKMTARMRKM 42 (209)
T ss_pred HHHhhcCc-hHHHHHHH---HHHHHHHHHHHH
Confidence 67899999 46665532 344555555543
No 97
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=38.24 E-value=41 Score=31.04 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=20.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH
Q 028296 146 QINTFKRKVRGVQKENKSLQDGFI 169 (211)
Q Consensus 146 qi~~l~kk~~~l~een~~L~~~~~ 169 (211)
|...|++|+..|+..|..|..++.
T Consensus 287 eNqeL~kkV~~Le~~N~sLl~qL~ 310 (472)
T KOG0709|consen 287 ENQELQKKVEELELSNRSLLAQLK 310 (472)
T ss_pred CcHHHHHHHHHHhhccHHHHHHHH
Confidence 567899999999999999988763
No 98
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=38.05 E-value=3.6e+02 Score=25.64 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=15.5
Q ss_pred HHHHHhhhcCCeEEEEEecC-CC------ccccccCCc
Q 028296 31 KARELTILCDAKVSILICSS-TA------KAHEYISPS 61 (211)
Q Consensus 31 KA~ELSvLCdaeva~Iifs~-~g------kl~~~~sp~ 61 (211)
+|+.|.---| +-=..+|.. .| .+|.|+.|.
T Consensus 78 ~ayyLPk~~~-e~YqfcYv~~~g~V~G~S~pFqf~~~~ 114 (546)
T PF07888_consen 78 QAYYLPKDDD-EFYQFCYVDQKGEVRGASTPFQFRAPK 114 (546)
T ss_pred CcccCCCCCC-CeEEEEEECCCccEEEecCCcccCCCC
Confidence 4666665433 333334433 33 477888765
No 99
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=37.88 E-value=1.5e+02 Score=27.29 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=34.9
Q ss_pred CccccccCCcc----hhH----HHHHHHhhhhccccchhhhHHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 028296 52 AKAHEYISPST----TTK----QLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTG 123 (211)
Q Consensus 52 gkl~~~~sp~~----~~~----~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~ 123 (211)
+..++|+||.. .+. ..+.+|+-+.+.. ...+-.....+..|.++++.|+.- ....=-+++ +|+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~fe~pi~ele~ki~el~~~----~~~~~~~~~-~ei~~ 109 (431)
T PLN03230 37 RLEHEYPWPEKLPQGELTTGALKILNRFKPLKNKP--KPVTLPFEKPIVDLENRIDEVREL----ANKTGVDFS-AQIAE 109 (431)
T ss_pred CCCCCCCCcccCCCCcccccHHHHHHhcCCCCCCC--CCCccchhhHHHHHHHHHHHHHhh----hhcccccHH-HHHHH
Confidence 33489999864 222 3666666443321 111222233444555555555431 111101222 46666
Q ss_pred HHHHHHHHHHHH
Q 028296 124 LEQDILDGLKII 135 (211)
Q Consensus 124 LE~~Le~~L~~I 135 (211)
||..++.....|
T Consensus 110 l~~~~~~~~~~i 121 (431)
T PLN03230 110 LEERYDQVRREL 121 (431)
T ss_pred HHHHHHHHHHHH
Confidence 666555444433
No 100
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=37.86 E-value=1.7e+02 Score=22.34 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 028296 117 TLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDG 167 (211)
Q Consensus 117 s~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~ 167 (211)
.+.|++.+-.-.+..+......-... -.+|..|+++...+...|..|.++
T Consensus 81 ~~~e~qsli~~yE~~~~kLe~e~~~K-dsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 81 EIQEQQSLIKTYEIVVKKLEAELRAK-DSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56788888777777777665544333 457889999999999999988665
No 101
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=37.79 E-value=29 Score=29.28 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=29.0
Q ss_pred HHhhhhccHHHHHHHHhhhcCC---eEEEEEecCCCccccccC
Q 028296 20 TFSKRRNGLFKKARELTILCDA---KVSILICSSTAKAHEYIS 59 (211)
Q Consensus 20 Tf~KRr~GL~KKA~ELSvLCda---eva~Iifs~~gkl~~~~s 59 (211)
-|.+-+.|++||.. ...||+. -||-|.||+.++..-|++
T Consensus 119 ~~~~~~~~~~~~~~-~~~L~~~~~~l~~~v~fS~~~r~IGFSk 160 (269)
T PRK09822 119 FYRREKGGFLKKIK-FNILKRVHKALLISVPLSKRGRLAGFCK 160 (269)
T ss_pred hhhhccCchhhhhH-HHHHhhhhhhhEEEeeccccCCceeeee
Confidence 34555888998874 7788854 466667999999888876
No 102
>PF14645 Chibby: Chibby family
Probab=37.46 E-value=59 Score=24.16 Aligned_cols=19 Identities=16% Similarity=0.336 Sum_probs=8.9
Q ss_pred HHHhhhhHHHHHHHHHHHH
Q 028296 150 FKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 150 l~kk~~~l~een~~L~~~~ 168 (211)
++++.+.|+|||+.|+-++
T Consensus 76 l~~~n~~L~EENN~Lklk~ 94 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKI 94 (116)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444555555444443
No 103
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=37.07 E-value=3.8e+02 Score=27.60 Aligned_cols=42 Identities=14% Similarity=0.217 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 127 DILDGLKIIHECKDQV-LARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 127 ~Le~~L~~Ir~RK~~l-l~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.|+.-|...|+|=+++ +..+|=++++|...++.++...+.++
T Consensus 282 MLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kt 324 (1195)
T KOG4643|consen 282 MLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKT 324 (1195)
T ss_pred HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4666677777765442 34577788888888888888888888
No 104
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=36.99 E-value=1.7e+02 Score=21.50 Aligned_cols=49 Identities=22% Similarity=0.323 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 028296 117 TLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQD 166 (211)
Q Consensus 117 s~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~ 166 (211)
+++=|-..-+.|...+....++-. .+.+++..++++.+.+.++.+.|++
T Consensus 67 ~ieYLl~~q~~L~~~~~~l~~~~~-~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 67 SIEYLLHCQEYLSSQLEQLEERLQ-ELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444322 2244455555555555555555544
No 105
>cd01282 HTH_MerR-like_sg3 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 3). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=36.67 E-value=1.3e+02 Score=21.74 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGL---KIIHECKDQVLARQINTFKRKVRGVQKENKSLQDG 167 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L---~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~ 167 (211)
++|++|+..+-...+..- ... ....+++.+++..+..+...|+.....|...
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~ 110 (112)
T cd01282 56 GLTLEEIREFLPCLRGGEPTFRPC-PDLLAVLRRELARIDRQIADLTRSRDRLDAY 110 (112)
T ss_pred CCCHHHHHHHHHHhhCCCccCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888887765443321 111 1223566666777777777666665555443
No 106
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=36.41 E-value=92 Score=24.75 Aligned_cols=43 Identities=14% Similarity=0.404 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhhHHHHHHHHHHHH
Q 028296 121 LTGLEQDILDGLKIIHECKDQVLARQI---NTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 121 L~~LE~~Le~~L~~Ir~RK~~ll~~qi---~~l~kk~~~l~een~~L~~~~ 168 (211)
|.++|..+..++.+ .-+|..+| +.|+..+.-|.+|...|+.++
T Consensus 2 LeD~EsklN~AIER-----nalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIER-----NALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555543 22334433 233444444444444444444
No 107
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=36.32 E-value=19 Score=29.80 Aligned_cols=16 Identities=6% Similarity=0.113 Sum_probs=13.9
Q ss_pred CeEEEEEecCCCcccc
Q 028296 41 AKVSILICSSTAKAHE 56 (211)
Q Consensus 41 aeva~Iifs~~gkl~~ 56 (211)
-|-|+-||||+|.++.
T Consensus 4 ydraltvFSPDGhL~Q 19 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQ 19 (249)
T ss_pred cccceEEECCCCCEEe
Confidence 4678999999999986
No 108
>PRK15002 redox-sensitivie transcriptional activator SoxR; Provisional
Probab=36.06 E-value=1.2e+02 Score=23.70 Aligned_cols=54 Identities=9% Similarity=0.110 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-......-...-.....++.+++..+.++...|+.....|...+
T Consensus 67 G~sL~eIk~ll~~~~~~~~~~~~~~~~ll~~k~~~l~~~I~~L~~~~~~L~~~i 120 (154)
T PRK15002 67 GIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCI 120 (154)
T ss_pred CCCHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888776443221111112344556666777777777777666665544
No 109
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=36.04 E-value=1.5e+02 Score=21.94 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-...+..-.... .-..++.+++..+.++...|+.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 109 (127)
T cd01108 57 GFSLEEIRELLALWRDPSRASA-DVKALALEHIAELERKIAELQAMRRTLQQLA 109 (127)
T ss_pred CCCHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888886653332211111 1235677788888888887777766666655
No 110
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=36.02 E-value=1.4e+02 Score=21.77 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-.....+-... ....+++.+++..+.++...|+.....|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (123)
T cd04770 57 GFSLAEIRELLSLRDDGAAPC-AEVRALLEEKLAEVEAKIAELQALRAELAGLL 109 (123)
T ss_pred CCCHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888765543321111 22345667777777777777766666665544
No 111
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.71 E-value=5.5e+02 Score=27.06 Aligned_cols=12 Identities=8% Similarity=0.180 Sum_probs=8.1
Q ss_pred EEEEEecCCCcc
Q 028296 43 VSILICSSTAKA 54 (211)
Q Consensus 43 va~Iifs~~gkl 54 (211)
...|||-|-|..
T Consensus 150 f~~vi~~~Qge~ 161 (1311)
T TIGR00606 150 LNNVIFCHQEDS 161 (1311)
T ss_pred HhhceeeCCccc
Confidence 345677787875
No 112
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=35.67 E-value=19 Score=29.98 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=18.0
Q ss_pred hhhcCCeEEEEEecCCCcccc
Q 028296 36 TILCDAKVSILICSSTAKAHE 56 (211)
Q Consensus 36 SvLCdaeva~Iifs~~gkl~~ 56 (211)
||=.|-|.|.-+|||+|++|.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQ 23 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQ 23 (254)
T ss_pred cccccccccceeeCCCCceeh
Confidence 455788999999999999986
No 113
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=35.61 E-value=1.4e+02 Score=22.61 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-...+..-..... ..+++.+++..+..+...|+.....|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T PRK10227 57 GFNLEESGELVNLFNDPQRHSAD-VKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_pred CCCHHHHHHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888876544321111111 234566777888888888888777776655
No 114
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=35.51 E-value=3.7e+02 Score=24.98 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH
Q 028296 143 LARQINTFKRKVRGVQKENKSL 164 (211)
Q Consensus 143 l~~qi~~l~kk~~~l~een~~L 164 (211)
+...++.+++....+.|+|+.|
T Consensus 387 ~q~k~~k~~kel~~~~E~n~~l 408 (493)
T KOG0804|consen 387 LQTKLKKCQKELKEEREENKKL 408 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 115
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=35.49 E-value=3.9e+02 Score=25.29 Aligned_cols=86 Identities=19% Similarity=0.269 Sum_probs=45.5
Q ss_pred hhHHhHhhHHHHHHHHHHHHHHHHhhcCCC---------CCCCCHHHHHHHHHHHHHHHHHHHHHH---------HHHHH
Q 028296 83 HYEKMLENLGAVEQVNRILKKQIRQRMGES---------LNDLTLEELTGLEQDILDGLKIIHECK---------DQVLA 144 (211)
Q Consensus 83 ~~e~lq~el~kLk~~~~~L~~~ir~~~Ge~---------L~~Ls~~EL~~LE~~Le~~L~~Ir~RK---------~~ll~ 144 (211)
+.+.|+..|..++++|..++-+..++.-+. +.++=+++|+..-.++-..-..+..+- .-.++
T Consensus 160 ~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLl 239 (596)
T KOG4360|consen 160 LLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLL 239 (596)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888899988887665554332 112222333333222222211111111 12344
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 145 RQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 145 ~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.+|..+++|++.+.=++..|-.-+
T Consensus 240 sql~d~qkk~k~~~~Ekeel~~~L 263 (596)
T KOG4360|consen 240 SQLVDLQKKIKYLRHEKEELDEHL 263 (596)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 567778888887766666554433
No 116
>PRK11637 AmiB activator; Provisional
Probab=35.36 E-value=3.4e+02 Score=24.52 Aligned_cols=25 Identities=8% Similarity=0.072 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 144 ARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 144 ~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
..+|..+++++..+++....+...+
T Consensus 109 ~~eI~~~q~~l~~~~~~l~~rlra~ 133 (428)
T PRK11637 109 NASIAKLEQQQAAQERLLAAQLDAA 133 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666555555554
No 117
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=35.34 E-value=4e+02 Score=25.36 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=11.2
Q ss_pred HHhHhhHHHHHHHHHHHHHHH
Q 028296 85 EKMLENLGAVEQVNRILKKQI 105 (211)
Q Consensus 85 e~lq~el~kLk~~~~~L~~~i 105 (211)
..++.++.+|+.+++.++...
T Consensus 109 a~~e~ei~kl~~e~~elr~~~ 129 (546)
T KOG0977|consen 109 AKLEIEITKLREELKELRKKL 129 (546)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 345555566666555555433
No 118
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=35.03 E-value=1e+02 Score=24.57 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 144 ARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 144 ~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.+++..++.+...|..++..|..+.
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~ 134 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQEL 134 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544
No 119
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=34.91 E-value=4.6e+02 Score=25.97 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028296 120 ELTGLEQDILDGLKIIHECKDQVLA 144 (211)
Q Consensus 120 EL~~LE~~Le~~L~~Ir~RK~~ll~ 144 (211)
++..+...++..+..+.++|.+++.
T Consensus 540 e~~~~~~~l~~~~~~l~~~~~~~~~ 564 (771)
T TIGR01069 540 EQEKLKKELEQEMEELKERERNKKL 564 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 120
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=34.90 E-value=4.5e+02 Score=25.81 Aligned_cols=49 Identities=16% Similarity=0.214 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhhhhHHHHHHHHHHHHH
Q 028296 121 LTGLEQDILDGLKIIHECKDQVLAR------QINTFKRKVRGVQKENKSLQDGFI 169 (211)
Q Consensus 121 L~~LE~~Le~~L~~Ir~RK~~ll~~------qi~~l~kk~~~l~een~~L~~~~~ 169 (211)
+++=-..||.+|..=..-|..|+.. |++.++...+.-..|...|+.+|.
T Consensus 599 mqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 599 MQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333456777776665556666542 666666666667777778888873
No 121
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=34.62 E-value=30 Score=22.81 Aligned_cols=30 Identities=7% Similarity=0.283 Sum_probs=21.1
Q ss_pred cCCeEEEEEecCCCccccccCCcchhHHHHHH
Q 028296 39 CDAKVSILICSSTAKAHEYISPSTTTKQLLDL 70 (211)
Q Consensus 39 Cdaeva~Iifs~~gkl~~~~sp~~~~~~ii~R 70 (211)
|+..-.++|+ |.|..|...+|. .+.+|++.
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~-~~~~il~~ 76 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPE-DVEEIVEE 76 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHH-HHHHHHHh
Confidence 6555555555 678888888875 67787765
No 122
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.85 E-value=2.1e+02 Score=21.66 Aligned_cols=51 Identities=12% Similarity=0.266 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILD---GLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQD 166 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~---~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~ 166 (211)
++|++|+..+-...+. ....+.. +.+.+..++..+..+...+++-...|.+
T Consensus 56 G~sL~eI~~~l~~~~~~~~~~~~~~~-~~~~l~~~i~~Le~~l~~L~~~~~~l~~ 109 (134)
T cd04779 56 RLSLAEIKDQLEEVQRSDKEQREVAQ-EVQLVCDQIDGLEHRLKQLKPIASQTDR 109 (134)
T ss_pred CCCHHHHHHHHHhhccccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777666544332 2223333 3445677777777777777666666644
No 123
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=33.80 E-value=1.4e+02 Score=21.58 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=12.6
Q ss_pred ccchhhhHHhHhhHHHHH
Q 028296 78 DLWSSHYEKMLENLGAVE 95 (211)
Q Consensus 78 ~~~~~~~e~lq~el~kLk 95 (211)
..|...|+.|++++..+.
T Consensus 8 q~w~aEYe~LKEEi~~l~ 25 (99)
T PF13758_consen 8 QTWEAEYEGLKEEIEALP 25 (99)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 346777777777777773
No 124
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=33.56 E-value=2.1e+02 Score=21.49 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 130 DGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 130 ~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.++..+..|+. .+.-+|++|.++++.++++...|+..+
T Consensus 70 ~~~~eL~er~E-~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 70 EAVDELEERKE-TLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555543 446779999999999999999999998
No 125
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=33.33 E-value=1.7e+02 Score=21.74 Aligned_cols=53 Identities=19% Similarity=0.138 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-...+..-... ..-.+++.+++..+..+...|+.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T TIGR02047 57 DMSLAEIRQLLRYQDKPEKSC-SDVNALLDEHISHVRARIIKLQALIEQLVDLR 109 (127)
T ss_pred CCCHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888654332221111 12235677888888888888888777776655
No 126
>PRK04863 mukB cell division protein MukB; Provisional
Probab=33.31 E-value=6.1e+02 Score=27.36 Aligned_cols=54 Identities=9% Similarity=0.061 Sum_probs=33.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 028296 111 ESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQ 165 (211)
Q Consensus 111 e~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~ 165 (211)
.++.+||.++|...-..++..+......-..+ .+++..++.....+.+..+.+.
T Consensus 430 ~~~~~~SdEeLe~~LenF~aklee~e~qL~el-E~kL~~lea~leql~~~~~~l~ 483 (1486)
T PRK04863 430 CGLPDLTADNAEDWLEEFQAKEQEATEELLSL-EQKLSVAQAAHSQFEQAYQLVR 483 (1486)
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999988887777776655533222 3444455555555555444443
No 127
>PHA02414 hypothetical protein
Probab=33.12 E-value=1.5e+02 Score=21.50 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 028296 117 TLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENK 162 (211)
Q Consensus 117 s~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~ 162 (211)
.+.||+.+--.|+.-+. |.+.|.--+.-||+.|.+++..|.+-|.
T Consensus 37 av~ELRdivvslDKd~A-v~sEKqshi~yQi~~Lee~i~aL~~~n~ 81 (111)
T PHA02414 37 AVAELRDIVVSLDKDVA-VNSEKQSHIYYQIERLEEKISALAESNK 81 (111)
T ss_pred HHHHHHHHHHHhhhHhh-hhHHHhhHHHHHHHHHHHHHHHHHhccc
Confidence 45678888777777665 4555666667889999999999888775
No 128
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=32.93 E-value=46 Score=26.61 Aligned_cols=12 Identities=25% Similarity=0.354 Sum_probs=10.3
Q ss_pred cCCeEEEEEecC
Q 028296 39 CDAKVSILICSS 50 (211)
Q Consensus 39 Cdaeva~Iifs~ 50 (211)
.|+..|+|||-|
T Consensus 11 ~~~k~C~IC~Kp 22 (182)
T PF08432_consen 11 TDAKACFICYKP 22 (182)
T ss_pred CCCCceeEecCC
Confidence 688999999887
No 129
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=32.88 E-value=83 Score=23.03 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=14.6
Q ss_pred CCCCCHHHHHHHHHHHH
Q 028296 113 LNDLTLEELTGLEQDIL 129 (211)
Q Consensus 113 L~~Ls~~EL~~LE~~Le 129 (211)
++.||++|+..|...++
T Consensus 87 le~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 87 LEELSPEELEALQAEIE 103 (104)
T ss_pred HHhCCHHHHHHHHHHhc
Confidence 56899999999988776
No 130
>PF04697 Pinin_SDK_N: pinin/SDK conserved region; InterPro: IPR006787 This conserved region is found at the N-terminal of the member proteins. It is located adjacent and N-terminal to the pinin/SKD/memA domain IPR006786 from INTERPRO. Members of this family have very varied localisations within the eukaryotic cell. Pinin is known to localise at the desmosomes and is implicated in anchoring intermediate filaments to the desmosomal plaque [, ]. SDK2/3 is a dynamically localised nuclear protein thought to be involved in modulation of alternative pre-mRNA splicing []. MemA is a tumour marker preferentially expressed in human melanoma cell lines. A common feature of the members of this family is that they may all participate in regulating protein-protein interactions [].
Probab=32.78 E-value=75 Score=24.18 Aligned_cols=36 Identities=8% Similarity=0.168 Sum_probs=29.2
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHH
Q 028296 85 EKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEE 120 (211)
Q Consensus 85 e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~E 120 (211)
..|+.+|++.++.+..+...|+++.|.|.++.-+-+
T Consensus 6 ~~Lq~qlE~Ake~Lk~vDenIkKltGRDp~e~rp~q 41 (134)
T PF04697_consen 6 RTLQAQLEKAKESLKNVDENIKKLTGRDPSENRPGQ 41 (134)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhCCCccccCccc
Confidence 467888999999899999999999999876665443
No 131
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=32.32 E-value=2.4e+02 Score=23.91 Aligned_cols=28 Identities=11% Similarity=0.291 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 141 QVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 141 ~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+++..+.+.|+.+.+.|.-+|..|...+
T Consensus 107 ~~L~~en~~Lr~~n~~L~~~n~el~~~l 134 (292)
T KOG4005|consen 107 EILQNENDSLRAINESLLAKNHELDSEL 134 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3344455556666666666665555555
No 132
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.87 E-value=1.5e+02 Score=20.61 Aligned_cols=70 Identities=20% Similarity=0.168 Sum_probs=34.1
Q ss_pred HHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhhccccchhhhHHhHhhHHHHHHHHHHHHHHHHhhcC
Q 028296 32 ARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMG 110 (211)
Q Consensus 32 A~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~~ir~~~G 110 (211)
..||..|-|- ..||-.-|++|.-.+. ..+...|+.-... ....+..+...+..+.++...++..++.+.|
T Consensus 35 ~~eL~~l~~~---~~~y~~vG~~fv~~~~-~~~~~~L~~~~~~-----~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~ 104 (106)
T PF01920_consen 35 LEELEKLDDD---RKVYKSVGKMFVKQDK-EEAIEELEERIEK-----LEKEIKKLEKQLKYLEKKLKELKKKLYELFG 104 (106)
T ss_dssp HHHHHTSSTT----EEEEEETTEEEEEEH-HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHhCCCc---chhHHHHhHHHHHhhH-HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567776554 3444444777765432 2333333333221 2334445555555555555555555554444
No 133
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=31.77 E-value=2.9e+02 Score=22.64 Aligned_cols=51 Identities=10% Similarity=0.150 Sum_probs=30.5
Q ss_pred hhHHHHHHHhhhhccccchhhhHHhHhhHHHHHHHHHHHHHHHHhhcCCCC
Q 028296 63 TTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESL 113 (211)
Q Consensus 63 ~~~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~~ir~~~Ge~L 113 (211)
.+..+++.|....-+.---........+|.++.+.++.-++.+..-+-.++
T Consensus 23 ~v~~~~~~Y~~~vvTee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~ 73 (215)
T PF07083_consen 23 EVDEAVEKYKGYVVTEENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPI 73 (215)
T ss_pred HHHHHHHHhCCcccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 566788888765432211122234556788888888887887765554433
No 134
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=31.62 E-value=31 Score=23.91 Aligned_cols=29 Identities=7% Similarity=0.146 Sum_probs=19.2
Q ss_pred EEEEEecCCCccccccCCcchhHHHHHHHhhhh
Q 028296 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKTL 75 (211)
Q Consensus 43 va~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~ 75 (211)
||+|||+| .|+++.+- ++-+.+.++++..
T Consensus 14 vallv~GP-~kLP~~~r---~~G~~i~~~r~~~ 42 (80)
T TIGR01410 14 VALVVLGP-ERLPVAIR---AVGKFVRRLRGMA 42 (80)
T ss_pred HHHheECc-hHHHHHHH---HHHHHHHHHHHhh
Confidence 67999999 47776643 4456666666543
No 135
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=31.20 E-value=6.9e+02 Score=26.81 Aligned_cols=27 Identities=11% Similarity=0.308 Sum_probs=21.5
Q ss_pred EEEEecCCCccccccCCcchhHHHHHHHhhh
Q 028296 44 SILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (211)
Q Consensus 44 a~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~ 74 (211)
-+++|.++|++..|.+ +.+||..|-.+
T Consensus 962 Nm~~~d~~g~i~~~~~----~~~Il~~f~~~ 988 (1388)
T PTZ00108 962 NMVLFDENGKIKKYSD----ALDILKEFYLV 988 (1388)
T ss_pred eEEEEeCCCCcceeCC----HHHHHHHHHHH
Confidence 5678999999999865 46899888654
No 136
>cd01110 HTH_SoxR Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.
Probab=31.19 E-value=1.7e+02 Score=22.22 Aligned_cols=53 Identities=9% Similarity=0.114 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGL-KIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L-~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-..+...- ... .....++..+...+.++...|+.-...|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i 110 (139)
T cd01110 57 GLSLAEIAEALATLPEDRTPTK-ADWERLSRAWRDRLDERIAELQQLRDQLDGCI 110 (139)
T ss_pred CCCHHHHHHHHHHhccCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999888765433221 111 11224555566777777777777777776666
No 137
>smart00415 HSF heat shock factor.
Probab=31.15 E-value=33 Score=24.72 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=32.6
Q ss_pred HHHHHHHhhhcCCeEE-EEEecCCCccccccCCcchhHHHHHHHhhhhc
Q 028296 29 FKKARELTILCDAKVS-ILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (211)
Q Consensus 29 ~KKA~ELSvLCdaeva-~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~ 76 (211)
+.|-++ +|.|.+.. +|-.+|+|+.+.-..|..-...|+.+|-++..
T Consensus 6 ~~kL~~--~l~~~~~~~iI~W~~~G~~f~I~d~~~f~~~vLp~~Fk~~~ 52 (105)
T smart00415 6 LTKLYL--LVEDPSTDKIISWSPSGKSFVIWDPEEFAKNLLPRYFKHNN 52 (105)
T ss_pred HHHHHH--HHhCCCCCCEEEECCCCCEEEEcCHHHHHHHHHHHhcCCCC
Confidence 444444 45666665 88899999988877776555678999876653
No 138
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=31.10 E-value=3.9e+02 Score=23.90 Aligned_cols=42 Identities=12% Similarity=0.254 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 126 QDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 126 ~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++||..+...++++.++ .-|++.+++.-++.++|...|.+.+
T Consensus 130 q~LE~li~~~~EEn~~l-qlqL~~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCL-QLQLDALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHHhHhHHHHHHHHHHH
Confidence 45555666666665554 4456677766666777777776655
No 139
>TIGR02043 ZntR Zn(II)-responsive transcriptional regulator. This model represents the zinc and cadmium (II) responsive transcriptional activator of the gamma proteobacterial zinc efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-Cys-X(8-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=30.88 E-value=1.9e+02 Score=21.58 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILD-GLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~-~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-..... .-... ..-..++.+++..++++...|+.-...|...+
T Consensus 58 G~sl~eI~~~l~~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (131)
T TIGR02043 58 GFTLDEIKELLSIKLDATEHSC-AEVKAIVDAKLELVDEKINELTKIRRSLKKLS 111 (131)
T ss_pred CCCHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888887653311 10011 22345677788888888888777766666555
No 140
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=30.50 E-value=1.7e+02 Score=22.22 Aligned_cols=54 Identities=22% Similarity=0.198 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-......-..--.....++.+++..+.++...|+.....|....
T Consensus 58 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 111 (140)
T PRK09514 58 GFTLEEIRELLSIRLDPEHHTCQEVKGIVDEKLAEVEAKIAELQHMRRSLQRLN 111 (140)
T ss_pred CCCHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888887654321100000122335667777777777777777666665554
No 141
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=30.26 E-value=4.4e+02 Score=24.32 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Q 028296 145 RQINTFKRKVRGVQKENKSLQDGFI 169 (211)
Q Consensus 145 ~qi~~l~kk~~~l~een~~L~~~~~ 169 (211)
+.+..+...++..+++|.+|++++.
T Consensus 278 ek~~qy~~Ee~~~reen~rlQrkL~ 302 (552)
T KOG2129|consen 278 EKLMQYRAEEVDHREENERLQRKLI 302 (552)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3344455555566666666666554
No 142
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=30.23 E-value=29 Score=28.29 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=19.3
Q ss_pred cCCeEEEEEecCCCccccccCCcchhHHHHHHHhhh
Q 028296 39 CDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (211)
Q Consensus 39 Cdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~ 74 (211)
-||++||+|||.++. + +.+.+++=|.+.
T Consensus 91 rgaqa~vLVFSTTDr-~-------SFea~~~w~~kv 118 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDR-Y-------SFEATLEWYNKV 118 (246)
T ss_pred ccccceEEEEecccH-H-------HHHHHHHHHHHH
Confidence 589999999999854 2 234555555543
No 143
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=30.23 E-value=2e+02 Score=20.30 Aligned_cols=14 Identities=29% Similarity=0.461 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDI 128 (211)
Q Consensus 115 ~Ls~~EL~~LE~~L 128 (211)
+++++++..+-...
T Consensus 57 g~~l~~i~~~~~~~ 70 (103)
T cd01106 57 GFSLKEIKELLKDP 70 (103)
T ss_pred CCCHHHHHHHHHcC
Confidence 78888888877654
No 144
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=30.14 E-value=3e+02 Score=22.38 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 142 VLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 142 ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
...+.+..|..|...|..+|..|+.-+
T Consensus 112 ~Y~~KL~eLE~kq~~L~rEN~eLKElc 138 (195)
T PF10226_consen 112 QYQQKLKELEDKQEELIRENLELKELC 138 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334445555555556667777776655
No 145
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=30.07 E-value=4e+02 Score=27.70 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=40.3
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028296 85 EKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKR 152 (211)
Q Consensus 85 e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~k 152 (211)
.+.-..+..|+++...|+.+- -+|..+-+.+++.+...||++|...-..+-.-=---+..||..|.+
T Consensus 1127 kK~ia~lnnlqqElklLRnEK-~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~ 1193 (1439)
T PF12252_consen 1127 KKAIANLNNLQQELKLLRNEK-IRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEK 1193 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHhHH-HhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 333345556666666665542 2345555678999999999998876555544333333446666665
No 146
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=29.92 E-value=3.1e+02 Score=22.38 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 028296 119 EELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDG 167 (211)
Q Consensus 119 ~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~ 167 (211)
++|..+-..|+..-..+-++-.+ +..+...|-.++..|+++|..|...
T Consensus 70 edLk~~~~~lEE~~~~L~aq~rq-lEkE~q~L~~~i~~Lqeen~kl~~e 117 (193)
T PF14662_consen 70 EDLKTLAKSLEEENRSLLAQARQ-LEKEQQSLVAEIETLQEENGKLLAE 117 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 34444444444444444333222 2334445555555566666555443
No 147
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=29.88 E-value=1.5e+02 Score=20.00 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 141 QVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 141 ~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
..+..++..++++...++.+|..|+.++
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei 54 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEV 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888999999998887
No 148
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=29.49 E-value=4e+02 Score=23.52 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=40.8
Q ss_pred HHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccC-CcchhHHHHHHHhhhhccccchhhhHHhHhhHHHHHHHH
Q 028296 20 TFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS-PSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVN 98 (211)
Q Consensus 20 Tf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~s-p~~~~~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~~ 98 (211)
++..|..+|-|+-.|+--.|+ ..|.+..++. ...++..++..++... ..+..+.+.++..+..++..+
T Consensus 34 qLqer~q~LKkk~~el~~~~~---------~~~d~~~~~~~~~~~La~lL~~sre~N--k~L~~Ev~~Lrqkl~E~qGD~ 102 (319)
T PF09789_consen 34 QLQERYQALKKKYRELIQEAA---------GFGDPSIPPEKENKNLAQLLSESREQN--KKLKEEVEELRQKLNEAQGDI 102 (319)
T ss_pred HHHHHHHHHHHHHHHhhhhhc---------ccCCccCCcccchhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhchH
Confidence 567788899898888773321 1122222211 1125566777776532 123344455566666666666
Q ss_pred HHHHHHHH
Q 028296 99 RILKKQIR 106 (211)
Q Consensus 99 ~~L~~~ir 106 (211)
..|+..+.
T Consensus 103 KlLR~~la 110 (319)
T PF09789_consen 103 KLLREKLA 110 (319)
T ss_pred HHHHHHHH
Confidence 66666553
No 149
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=29.44 E-value=27 Score=31.58 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=46.3
Q ss_pred eeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhh
Q 028296 8 MKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (211)
Q Consensus 8 i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~ 74 (211)
|+++.+...-..||..|+.| ||+.+||..+-+.||....-...|..+. ...+.-+-|+..
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~i~q~~a~~q~~ 77 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNEE-PIEQTKAQLQKF 77 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCcc-cccccHHHHhhh
Confidence 77888888888999999999 9999999999999988876677776654 233444444443
No 150
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=29.35 E-value=6.1e+02 Score=25.60 Aligned_cols=13 Identities=23% Similarity=0.138 Sum_probs=9.0
Q ss_pred EecCCCccccccC
Q 028296 47 ICSSTAKAHEYIS 59 (211)
Q Consensus 47 ifs~~gkl~~~~s 59 (211)
.|-+.|++..|..
T Consensus 139 ~~~~q~~~~~~~~ 151 (1179)
T TIGR02168 139 SIIEQGKISEIIE 151 (1179)
T ss_pred hheecccHHHHHc
Confidence 3446788888873
No 151
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=29.31 E-value=4.2e+02 Score=23.71 Aligned_cols=50 Identities=22% Similarity=0.236 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 118 LEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 118 ~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.++|+.--++|-+.|..+|+ -.-.+...+..|..=++.+.|||..|.-++
T Consensus 101 ~~qL~~qnqkL~nqL~~~~~-vf~k~k~~~q~LE~li~~~~EEn~~lqlqL 150 (401)
T PF06785_consen 101 SEQLQSQNQKLKNQLFHVRE-VFMKTKGDIQHLEGLIRHLREENQCLQLQL 150 (401)
T ss_pred HHHHHHhHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444555555555554 222233344444444555555555554443
No 152
>PHA02109 hypothetical protein
Probab=29.13 E-value=2.5e+02 Score=22.66 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=23.1
Q ss_pred hhcCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 028296 107 QRMGESLNDLT--LEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKEN 161 (211)
Q Consensus 107 ~~~Ge~L~~Ls--~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een 161 (211)
...|+.|++|+ ++|+..|+. |-..+..+..+++-|..++..+-
T Consensus 179 ~~t~~~L~~~~~~L~~I~~L~~------------ki~~LS~E~~Q~~~Ki~N~R~~V 223 (233)
T PHA02109 179 SHTGENLEGLTDKLKQISELTI------------KLEALSDEACQVKHKILNLRAEV 223 (233)
T ss_pred ccchhhhhhhhHHHHhhHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666664 444444443 33445666666666665555443
No 153
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=29.10 E-value=4e+02 Score=23.48 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 127 DILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 127 ~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.|..-|...|++-. -+..+++.|+++...++.++..|+.++
T Consensus 69 ~La~lL~~sre~Nk-~L~~Ev~~Lrqkl~E~qGD~KlLR~~l 109 (319)
T PF09789_consen 69 NLAQLLSESREQNK-KLKEEVEELRQKLNEAQGDIKLLREKL 109 (319)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 34444556666544 457889999999999999999999988
No 154
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=28.99 E-value=5.3e+02 Score=24.78 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=11.4
Q ss_pred HHhHhhHHHHHHHHHHHHHHHH
Q 028296 85 EKMLENLGAVEQVNRILKKQIR 106 (211)
Q Consensus 85 e~lq~el~kLk~~~~~L~~~ir 106 (211)
..+..++..+..+.+.+...++
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555443
No 155
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=28.89 E-value=2.2e+02 Score=21.05 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-...+..-... ..-..++.+++..+.++...|+.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (126)
T cd04785 57 GFSLEEIRALLALSDRPDRSC-AEADAIARAHLADVRARIADLRRLEAELKRMV 109 (126)
T ss_pred CCCHHHHHHHHhhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888755433211111 12245677778888888888877777776655
No 156
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=28.85 E-value=4.2 Score=25.91 Aligned_cols=29 Identities=17% Similarity=0.340 Sum_probs=19.0
Q ss_pred EEEEEecCCCccccccCCcchhHHHHHHHhhhh
Q 028296 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKTL 75 (211)
Q Consensus 43 va~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~ 75 (211)
|++|||+| +|++.++. ++-+.+..|++..
T Consensus 12 valllfGp-~kLP~~~r---~lG~~ir~fk~~~ 40 (53)
T PF02416_consen 12 VALLLFGP-KKLPELAR---SLGKAIREFKKAI 40 (53)
T ss_dssp HHHHHS-T-TTHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHhCc-hHHHHHHH---HHHHHHHHHHHHH
Confidence 56788999 68887764 4556677776543
No 157
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=28.74 E-value=2.4e+02 Score=21.16 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-......- .. ..-..++.+++..+..+...|++....|...+
T Consensus 57 GfsL~eI~~ll~~~~~~~-~~-~~~~~~l~~k~~~i~~~i~~L~~~~~~L~~~i 108 (131)
T cd04786 57 GFSLDEIRQLLPADASNW-QH-DELLAALERKVADIEALEARLAQNKAQLLVLI 108 (131)
T ss_pred CCCHHHHHHHHhcccCCC-CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777776654221100 00 12234667777777777777777777776665
No 158
>PF13252 DUF4043: Protein of unknown function (DUF4043)
Probab=28.57 E-value=28 Score=30.85 Aligned_cols=28 Identities=7% Similarity=0.135 Sum_probs=20.1
Q ss_pred HHHhhhcCCeEEEEEecCCCccccccCC
Q 028296 33 RELTILCDAKVSILICSSTAKAHEYISP 60 (211)
Q Consensus 33 ~ELSvLCdaeva~Iifs~~gkl~~~~sp 60 (211)
-.-++||||+++++.|+..+..-.|.|.
T Consensus 272 v~ralLlGaQA~~~A~G~~~~~~~~~w~ 299 (341)
T PF13252_consen 272 VARALLLGAQALVIAFGKSGSGMRFFWV 299 (341)
T ss_pred eeeeeeechhheeeeeeccCCCcccccc
Confidence 3457899999999999984444444443
No 159
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=28.40 E-value=5.4e+02 Score=24.74 Aligned_cols=111 Identities=16% Similarity=0.279 Sum_probs=62.4
Q ss_pred EEEecCCCccccccCCcchhHHHHHHHhhhhccccchhhhHHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 028296 45 ILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGL 124 (211)
Q Consensus 45 ~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~L 124 (211)
-||=|..+|.++ .|+.++..-.+.-.++-|. .+..++++|.+...+.. +...+..+-.+=+.-|-.|
T Consensus 19 RVVkSaKdKr~d------el~~~i~~i~n~~ki~Dw~----~i~~eFd~L~k~~~K~~---~~~~~~~~P~~yir~l~~L 85 (595)
T PF05470_consen 19 RVVKSAKDKRFD------ELEEIIKQIRNAMKINDWS----SILTEFDKLNKQLEKSK---KIQQNEGIPRFYIRALVEL 85 (595)
T ss_pred ccccchHHHHHH------HHHHHHHHHHHHHhhccHH----HHHHHHHHHHHHHHHHh---hhhhcCCCChhHHHHHHHH
Confidence 344444444443 3444555444443333333 34455555554444322 2334566677778999999
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 125 EQDILDGLKIIHECK--DQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 125 E~~Le~~L~~Ir~RK--~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
|..|...+..-..+| ..--..-.++++.|++.-..+.......+
T Consensus 86 ed~v~e~~~~ke~~Kkms~~nakaln~lkQklkK~~k~~e~~i~~y 131 (595)
T PF05470_consen 86 EDFVNETWADKEAKKKMSKNNAKALNTLKQKLKKYNKEYEAQIAKY 131 (595)
T ss_pred HHHHHHHHhhhHhhhhcCHHhHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999764422222 11112345788888888777777776666
No 160
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=28.40 E-value=1.6e+02 Score=26.11 Aligned_cols=36 Identities=19% Similarity=0.356 Sum_probs=24.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028296 110 GESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGV 157 (211)
Q Consensus 110 Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l 157 (211)
...|++.|++|+-.|-+ -++.+..+++.|+.|+..|
T Consensus 23 ~~~~~~~~~~e~~aLr~------------EN~~LKkEN~~Lk~eVerL 58 (420)
T PF07407_consen 23 NHELEGVSIDENFALRM------------ENHSLKKENNDLKIEVERL 58 (420)
T ss_pred cccccccchhhhhhHHH------------HhHHHHHHHHHHHHHHHHH
Confidence 34688999999888754 2334556677777777776
No 161
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=28.12 E-value=2.8e+02 Score=21.32 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=9.6
Q ss_pred HHHHHHhhhhcccc
Q 028296 66 QLLDLYQKTLRVDL 79 (211)
Q Consensus 66 ~ii~RY~~~~~~~~ 79 (211)
.+|+.....+..+.
T Consensus 13 ~ll~~L~~s~etD~ 26 (142)
T PF07956_consen 13 SLLSQLQSSTETDS 26 (142)
T ss_pred HHHHHHhCCCCCCh
Confidence 67888877766553
No 162
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=28.01 E-value=6.9e+02 Score=25.86 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHH
Q 028296 144 ARQINTFKRKVRGVQKENKSLQ 165 (211)
Q Consensus 144 ~~qi~~l~kk~~~l~een~~L~ 165 (211)
...|.+++++...-.++.+.|.
T Consensus 442 ~~~i~~l~k~i~~~~~~l~~lk 463 (1074)
T KOG0250|consen 442 EGEILQLRKKIENISEELKDLK 463 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555554444443
No 163
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=27.87 E-value=38 Score=22.81 Aligned_cols=29 Identities=17% Similarity=0.437 Sum_probs=21.1
Q ss_pred cCCeEEEEEecCCCccccccCCcchhHHHHHHH
Q 028296 39 CDAKVSILICSSTAKAHEYISPSTTTKQLLDLY 71 (211)
Q Consensus 39 Cdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY 71 (211)
|+-..+++| +|..|...+|. .+.+|++.|
T Consensus 52 C~~gP~v~v---~g~~y~~vt~~-~i~~i~~~~ 80 (80)
T cd03064 52 CDLAPVMMI---NDDVYGRLTPE-KVDAILEAL 80 (80)
T ss_pred CCCCCEEEE---CCEEECCCCHH-HHHHHHHhC
Confidence 776666666 37888888885 677887654
No 164
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=27.84 E-value=6.3e+02 Score=25.27 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 116 LTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 116 Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+-+--|+.|--.|+.-|..-.. -.+++....+.|-|-...+.+||++|...+
T Consensus 427 ~El~sLqSlN~~Lq~ql~es~k-~~e~lq~kneellk~~e~q~~Enk~~~~~~ 478 (861)
T PF15254_consen 427 LELFSLQSLNMSLQNQLQESLK-SQELLQSKNEELLKVIENQKEENKRLRKMF 478 (861)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-hHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555554444444433222 123445555666666777778888777765
No 165
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=27.83 E-value=2.2e+02 Score=20.02 Aligned_cols=61 Identities=18% Similarity=0.346 Sum_probs=33.6
Q ss_pred hHHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 028296 84 YEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENK 162 (211)
Q Consensus 84 ~e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~ 162 (211)
++.+.+.+...+...+.+...++ + ..||.++=..||..+. .++.++....++.+.|..||.
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~---~---~eLs~e~R~~lE~E~~------------~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLR---R---RELSPEARRSLEKELN------------ELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHc---c---cCCChHHHHHHHHHHH------------HHHHHhhccHHHHHHHHHhhh
Confidence 33444444444444444444332 2 3688888888883322 234455566666666777765
No 166
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.54 E-value=7.5e+02 Score=26.09 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 028296 117 TLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDG 167 (211)
Q Consensus 117 s~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~ 167 (211)
|.++|..+...+...+...+.+...+ ..++..+......+.++...+...
T Consensus 299 s~eEL~~ll~~f~~~~~e~~~~~~~l-e~e~~~l~~el~~l~~~~~~l~~e 348 (1311)
T TIGR00606 299 TDEQLNDLYHNHQRTVREKERELVDC-QRELEKLNKERRLLNQEKTELLVE 348 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899998888888777766644333 445555555555555555544443
No 167
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=27.54 E-value=6.2e+02 Score=25.14 Aligned_cols=6 Identities=0% Similarity=-0.103 Sum_probs=2.6
Q ss_pred EEEEec
Q 028296 44 SILICS 49 (211)
Q Consensus 44 a~Iifs 49 (211)
+-+.|.
T Consensus 465 ~~~~~d 470 (782)
T PRK00409 465 ASVEFD 470 (782)
T ss_pred EEEEEe
Confidence 334454
No 168
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=27.22 E-value=1.9e+02 Score=19.20 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 120 ELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 120 EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+|..|+..++.-+..... +..+...|+..+..+..|+..|..+.
T Consensus 1 ~L~~Le~kle~Li~~~~~-----L~~EN~~Lr~q~~~~~~ER~~L~ekn 44 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLER-----LKSENRLLRAQEKTWREERAQLLEKN 44 (65)
T ss_pred CHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777665543 23444555555555555555555544
No 169
>PRK00404 tatB sec-independent translocase; Provisional
Probab=26.71 E-value=60 Score=25.11 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=10.9
Q ss_pred EEEEEecCCCcccccc
Q 028296 43 VSILICSSTAKAHEYI 58 (211)
Q Consensus 43 va~Iifs~~gkl~~~~ 58 (211)
|+||||+| .|+....
T Consensus 15 VaLlV~GP-kkLP~la 29 (141)
T PRK00404 15 VALLVLGP-ERLPGAA 29 (141)
T ss_pred HHHHhcCc-hHHHHHH
Confidence 67889999 4666654
No 170
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=26.57 E-value=69 Score=25.71 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=24.8
Q ss_pred hhccHHHHHHHHhhhcCCeEEEEEecCC-----CccccccCCcchhHHHHHHHhhhhc
Q 028296 24 RRNGLFKKARELTILCDAKVSILICSST-----AKAHEYISPSTTTKQLLDLYQKTLR 76 (211)
Q Consensus 24 Rr~GL~KKA~ELSvLCdaeva~Iifs~~-----gkl~~~~sp~~~~~~ii~RY~~~~~ 76 (211)
|..-++++..++...|..=...|.=.|. .+.+.|.=| ++.+++++|.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~I~~~v~~~P~~l~~a~~Fl~~yLp--~~~~l~~kY~~l~~ 150 (199)
T PF10112_consen 95 RDLEMIEKVSRIEKIARRIFKYVEKDPERLTQARKFLYYYLP--TAVKLLEKYAELES 150 (199)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCHHhHHHHHHHHHHHhh--HHHHHHHHHHHHHh
Confidence 3444556666666665443333333331 222223334 35677777776544
No 171
>PF15058 Speriolin_N: Speriolin N terminus
Probab=26.40 E-value=1.1e+02 Score=24.86 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 143 LARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 143 l~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+..+.+.|||.++ |..||..|++-+
T Consensus 17 Lv~ENeeLKKlVr-LirEN~eLksaL 41 (200)
T PF15058_consen 17 LVRENEELKKLVR-LIRENHELKSAL 41 (200)
T ss_pred HHhhhHHHHHHHH-HHHHHHHHHHHH
Confidence 3467899999999 556688888887
No 172
>smart00340 HALZ homeobox associated leucin zipper.
Probab=26.34 E-value=1.6e+02 Score=17.92 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=17.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q 028296 148 NTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 148 ~~l~kk~~~l~een~~L~~~~ 168 (211)
+.|++=-..|-+||.+|++.+
T Consensus 8 e~LKrcce~LteeNrRL~ke~ 28 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEV 28 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456777778999999999998
No 173
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=26.33 E-value=57 Score=23.20 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=28.6
Q ss_pred hcCCeEEEEEecCCC-ccccccCCcchhHHHHHHHhhh
Q 028296 38 LCDAKVSILICSSTA-KAHEYISPSTTTKQLLDLYQKT 74 (211)
Q Consensus 38 LCdaeva~Iifs~~g-kl~~~~sp~~~~~~ii~RY~~~ 74 (211)
+|..+--|.|+-|.| -.|....|. .+.+|++.+...
T Consensus 44 ~C~~ePlV~V~~p~g~v~Y~~V~~e-dv~~Iv~~~~~~ 80 (92)
T cd03063 44 MYWLEPLVEVETPGGRVAYGPVTPA-DVASLLDAGALE 80 (92)
T ss_pred ecCCCCEEEEEeCCCcEEEEeCCHH-HHHHHHHHHhhc
Confidence 588888888887877 677777776 788999987653
No 174
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=26.22 E-value=1.9e+02 Score=18.71 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 139 KDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 139 K~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
|..-|..++.+|..|+..|..+.+.|+..+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567778888888888888888887776
No 175
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=26.22 E-value=22 Score=31.71 Aligned_cols=41 Identities=34% Similarity=0.403 Sum_probs=0.0
Q ss_pred hhhhccHHHHHHHHhhhcCCeEEE-EEecCCCccccccCCcc
Q 028296 22 SKRRNGLFKKARELTILCDAKVSI-LICSSTAKAHEYISPST 62 (211)
Q Consensus 22 ~KRr~GL~KKA~ELSvLCdaeva~-Iifs~~gkl~~~~sp~~ 62 (211)
+.=-.||+|=+.=..-||+|-.+| -+.+.+||+.+|+||+.
T Consensus 50 s~aqd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~sl 91 (354)
T PF04873_consen 50 SRAQDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPSL 91 (354)
T ss_dssp ------------------------------------------
T ss_pred hhhhhHHHHhhccccccccCceeeecCCCCCCCccCCcCCcc
Confidence 333457777778889999999999 78888999999999975
No 176
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=26.06 E-value=4.6e+02 Score=24.95 Aligned_cols=72 Identities=13% Similarity=-0.004 Sum_probs=35.4
Q ss_pred HhhhcCCeEEEEEecCCCccccccCC--cchhHHHHHHHhhhhccccchhhhHHhHhhHHHHHHHHHHHHHHHH
Q 028296 35 LTILCDAKVSILICSSTAKAHEYISP--STTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIR 106 (211)
Q Consensus 35 LSvLCdaeva~Iifs~~gkl~~~~sp--~~~~~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~~ir 106 (211)
+.++|+-..|-+.|+..--.+.+... +..|.++|--++.....+........+...+.+|..+++.++...+
T Consensus 404 ~~t~v~~~la~~~~st~~~~~~~d~~~~~~km~~~i~~~~~~~~sd~~~~rer~l~a~t~kL~~E~e~~q~~~~ 477 (588)
T KOG3612|consen 404 KLTQVSKMLADLHYSTQLGGVHADPTVVEDKMKDAIIDLQESTLSDYSGSRERSLVAATEKLRQEFEELQQTSR 477 (588)
T ss_pred hhcccchhhhhcccccccCCcccchHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHHHh
Confidence 45667777776677764333332211 0133333333333322222222223456677777777777665443
No 177
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=25.88 E-value=53 Score=18.54 Aligned_cols=20 Identities=15% Similarity=-0.037 Sum_probs=14.7
Q ss_pred CeEEEEEecCCCccccccCC
Q 028296 41 AKVSILICSSTAKAHEYISP 60 (211)
Q Consensus 41 aeva~Iifs~~gkl~~~~sp 60 (211)
..-.-..|||+|+-..|++-
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEE
T ss_pred ccccCEEEecCCCEEEEEec
Confidence 34566789999999998873
No 178
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=25.85 E-value=2e+02 Score=23.06 Aligned_cols=65 Identities=11% Similarity=0.134 Sum_probs=35.3
Q ss_pred CeEEEEEe--cCCCccccccCCcc--------hhHHHHHHHhhhhccccchhhhHHhHhhHHHHHHHHHHHHHHHHhh
Q 028296 41 AKVSILIC--SSTAKAHEYISPST--------TTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQR 108 (211)
Q Consensus 41 aeva~Iif--s~~gkl~~~~sp~~--------~~~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~~ir~~ 108 (211)
+++++|+. ||+||=|-.-++.. +..-++.||...... .......+..+..++.+...+...++++
T Consensus 96 veaGLI~rrDS~NgkRy~~R~~~G~I~~A~GfdLsPL~~R~~El~~~---a~~~~~~~~~~r~lr~~it~~rR~i~~l 170 (177)
T PF03428_consen 96 VEAGLIVRRDSPNGKRYARRDRGGRIVEAFGFDLSPLIARAEELAAL---AEAARAERRALRRLRRRITLLRRDIRKL 170 (177)
T ss_pred HHCCCeeeccCCCCCccCccCCCCCEEeEeCcCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667775 58999887655431 445667777654321 1222223344555666666666555543
No 179
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=25.79 E-value=2.4e+02 Score=20.68 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|...+-..-... .. ..-..++.+++..++++...|+.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~--~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~l~~~~ 107 (126)
T cd04783 57 GFTLDEIAELLELDDGT--DC-SEARELAEQKLAEVDEKIADLQRMRASLQELV 107 (126)
T ss_pred CCCHHHHHHHHhcccCC--CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888877765432211 11 12245566677777777777766666665555
No 180
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.66 E-value=4.9e+02 Score=23.29 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=12.8
Q ss_pred hhHHHHHHHhhh--hccccchhhhHHhHh
Q 028296 63 TTKQLLDLYQKT--LRVDLWSSHYEKMLE 89 (211)
Q Consensus 63 ~~~~ii~RY~~~--~~~~~~~~~~e~lq~ 89 (211)
.+++|+-+.+-. ++.+-|..+++.++.
T Consensus 199 EvERV~PqLKv~~~~d~kDWR~hleqm~~ 227 (359)
T PF10498_consen 199 EVERVLPQLKVTIRADAKDWRSHLEQMKQ 227 (359)
T ss_pred HHHHHhhhheeeccCCcchHHHHHHHHHH
Confidence 455555555421 122445555555543
No 181
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=25.64 E-value=52 Score=18.62 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=16.8
Q ss_pred HhhhcCCeEEEEEecCCCccccc
Q 028296 35 LTILCDAKVSILICSSTAKAHEY 57 (211)
Q Consensus 35 LSvLCdaeva~Iifs~~gkl~~~ 57 (211)
|+--||+-|-+-||...|..-.|
T Consensus 3 lcpkcgvgvl~pvy~~kgeikvf 25 (36)
T PF09151_consen 3 LCPKCGVGVLEPVYNQKGEIKVF 25 (36)
T ss_dssp B-TTTSSSBEEEEE-TTS-EEEE
T ss_pred cCCccCceEEEEeecCCCcEEEE
Confidence 56679999999999999976655
No 182
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=25.25 E-value=2.7e+02 Score=20.53 Aligned_cols=53 Identities=17% Similarity=0.103 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-...+..-... .....++.+++..+.++...|+.....|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (127)
T TIGR02044 57 GFSLEECKELLNLWNDPNRTS-ADVKARTLEKVAEIERKISELQSMRDQLEALA 109 (127)
T ss_pred CCCHHHHHHHHHhhccCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888887655332211111 22234566777788888888877777776665
No 183
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=25.14 E-value=1.5e+02 Score=27.52 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 028296 157 VQKENKSLQDGF 168 (211)
Q Consensus 157 l~een~~L~~~~ 168 (211)
|.++...+...+
T Consensus 121 l~~~~~~~~~~l 132 (472)
T TIGR03752 121 LKSERQQLQGLI 132 (472)
T ss_pred HHHHHHHHHHHH
Confidence 333333343333
No 184
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=25.13 E-value=82 Score=19.84 Aligned_cols=26 Identities=15% Similarity=0.022 Sum_probs=19.7
Q ss_pred EEEEEecCCCccccccCCcchhHHHHHHHhh
Q 028296 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQK 73 (211)
Q Consensus 43 va~Iifs~~gkl~~~~sp~~~~~~ii~RY~~ 73 (211)
|.+.+|+.. ||+++..++.+++.+..
T Consensus 1 ~~v~~f~~~-----~C~~C~~~~~~l~~l~~ 26 (67)
T cd02973 1 VNIEVFVSP-----TCPYCPDAVQAANRIAA 26 (67)
T ss_pred CEEEEEECC-----CCCCcHHHHHHHHHHHH
Confidence 567888875 68888788888887754
No 185
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=25.09 E-value=26 Score=25.79 Aligned_cols=29 Identities=10% Similarity=0.245 Sum_probs=20.5
Q ss_pred EEEEEecCCCccccccCCcchhHHHHHHHhhhh
Q 028296 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKTL 75 (211)
Q Consensus 43 va~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~ 75 (211)
|+||||+| .|++.... ++-..+.+|++..
T Consensus 15 VallvfGP-kKLPelar---~lGk~i~~fk~~~ 43 (108)
T PRK14858 15 IALIVIGP-QKLPDLAR---SLGRGLAEFKKAT 43 (108)
T ss_pred HHHHhcCc-hHHHHHHH---HHHHHHHHHHHHH
Confidence 67899999 58887654 4556667776653
No 186
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=24.55 E-value=5.4e+02 Score=23.41 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=43.0
Q ss_pred HHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028296 85 EKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDIL----DGLKIIHECKDQVLARQINTFKRKVRGVQKE 160 (211)
Q Consensus 85 e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~LE~~Le----~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~ee 160 (211)
+.++..+.++++++...+..- +=++.|.-.|-..-| .-++.+-++|++.-...|..|+||....+..
T Consensus 7 ~~l~~Ki~~~~eqi~~e~~~r---------d~nv~eyLkl~~~aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~~y~~~ 77 (395)
T PF10267_consen 7 DHLQQKILKLKEQIKVEQTAR---------DENVAEYLKLASNADKQQAARIKQVFEKKNQKSAQTIAQLQKKLEQYHKR 77 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HhhHHHHHHHhhhccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544332211 123444444444333 3477788999999999999999998766655
Q ss_pred HHHH
Q 028296 161 NKSL 164 (211)
Q Consensus 161 n~~L 164 (211)
...|
T Consensus 78 l~el 81 (395)
T PF10267_consen 78 LKEL 81 (395)
T ss_pred HHHH
Confidence 5444
No 187
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=24.28 E-value=12 Score=24.98 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=24.8
Q ss_pred HHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhh
Q 028296 34 ELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTL 75 (211)
Q Consensus 34 ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~ 75 (211)
||-|++= ||+|||+|. |++..+. ++-+.+..|++..
T Consensus 8 ElliI~v--IalllfGp~-kLP~l~r---~lGk~ir~fkk~~ 43 (64)
T PRK14860 8 ELIVILV--IALVVFGPA-KLPQLGQ---ALGGAIRNFKKAS 43 (64)
T ss_pred HHHHHHH--HHHhhcCch-HHHHHHH---HHHHHHHHHHHHc
Confidence 5555543 789999995 8887754 4566777777654
No 188
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=24.12 E-value=3.6e+02 Score=21.17 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 144 ARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 144 ~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
..+...|..++..|+.+|+.|..++
T Consensus 88 ~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 88 RQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444556666666777776666555
No 189
>PF09388 SpoOE-like: Spo0E like sporulation regulatory protein; InterPro: IPR018540 Spore formation is an extreme response to starvation and can also be a component of disease transmission. Sporulation is controlled by an expanded two-component system where starvation signals result in sensor kinase activation and phosphorylation of the master sporulation response regulator Spo0A. Phosphatases such as Spo0E dephosphorylate Spo0A thereby inhibiting sporulation. This is a family of Spo0E-like phosphatases. The structure of a Bacillus anthracis member of this family has revealed an anti-parallel alpha-helical structure []. ; PDB: 2BZB_B 2C0S_A.
Probab=23.91 E-value=1.7e+02 Score=17.49 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 028296 96 QVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKII 135 (211)
Q Consensus 96 ~~~~~L~~~ir~~~Ge~L~~Ls~~EL~~LE~~Le~~L~~I 135 (211)
.+++.++.++..+.... +++-.+...+.+.||.-+...
T Consensus 4 ~~Ie~~R~~L~~~~~~~--~l~~~~vl~~Sq~LD~lI~~y 41 (45)
T PF09388_consen 4 EEIEELRQELNELAEKK--GLTDPEVLELSQELDKLINEY 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHC--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHHH
Confidence 34444444444333222 777788888888888776543
No 190
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.86 E-value=7e+02 Score=24.50 Aligned_cols=49 Identities=8% Similarity=0.250 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 028296 120 ELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGFI 169 (211)
Q Consensus 120 EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~~ 169 (211)
+|+.=-++|+..+..+-..+. .=++.+..|.+|.+..++.-..+..++.
T Consensus 464 qlr~ene~Lq~Kl~~L~~aRq-~DKq~l~~LEkrL~eE~~~R~~lEkQL~ 512 (697)
T PF09726_consen 464 QLRQENEQLQNKLQNLVQARQ-QDKQSLQQLEKRLAEERRQRASLEKQLQ 512 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344334455555555433332 2245677888888877777777777773
No 191
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=23.73 E-value=2.5e+02 Score=22.06 Aligned_cols=47 Identities=19% Similarity=0.394 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-..-.. ....++.+++..+.++...|+.....|...+
T Consensus 58 G~sL~eI~~ll~~~~~-------~~~~~L~~~~~~l~~ei~~L~~~~~~l~~ll 104 (172)
T cd04790 58 GVSLEDIRSLLQQPGD-------DATDVLRRRLAELNREIQRLRQQQRAIATLL 104 (172)
T ss_pred CCCHHHHHHHHhcCCh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777776543222 1234455666666666666666555554444
No 192
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=23.72 E-value=10 Score=23.60 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=22.0
Q ss_pred HHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhh
Q 028296 34 ELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (211)
Q Consensus 34 ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~ 74 (211)
||-|..= |++++|+| +|+++.+. ++-+.+..|++.
T Consensus 6 ElliI~v--i~llvfGp-~kLP~~~r---~lG~~i~~fk~~ 40 (47)
T TIGR01411 6 EWLIILV--VILLLFGA-KKLPELGR---DLGKAIKEFKKA 40 (47)
T ss_pred HHHHHHH--HHHHhcCc-hHhHHHHH---HHHHHHHHHHHH
Confidence 4444432 67889998 58887754 445666666654
No 193
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=23.62 E-value=2.7e+02 Score=21.23 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-..-+... . ..-..++.+++..++++...|+.....|...+
T Consensus 64 G~sL~eI~~ll~~~~~~~--~-~~~~~ll~~k~~~l~~~i~~L~~~~~~L~~~~ 114 (144)
T PRK13752 64 GFSLDEIAELLRLEDGTH--C-EEASSLAEHKLKDVREKMADLARMEAVLSELV 114 (144)
T ss_pred CCCHHHHHHHHhccCCCC--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888887654222111 0 12235667777788888887777777776655
No 194
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=23.40 E-value=3.1e+02 Score=20.17 Aligned_cols=51 Identities=16% Similarity=0.240 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|+..+-...+. ..+. .-..++.+++..++++...|+.....|...+
T Consensus 56 G~sl~eI~~~l~~~~~--~~~~-~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 106 (124)
T TIGR02051 56 GFSLEEIGGLLGLVDG--THCR-EMYELASRKLKSVQAKMADLLRIERLLEELL 106 (124)
T ss_pred CCCHHHHHHHHhcccC--CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888876653332 1111 1234666777777777777777766666554
No 195
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=23.22 E-value=1.7e+02 Score=22.61 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=21.7
Q ss_pred ccHHHHHHHHhhhcCCeEEEEEecCC
Q 028296 26 NGLFKKARELTILCDAKVSILICSST 51 (211)
Q Consensus 26 ~GL~KKA~ELSvLCdaeva~Iifs~~ 51 (211)
.-|+++|.+++--=++..+|+.|+|.
T Consensus 22 q~Li~~~~~~a~~~~~~~~v~tF~~~ 47 (157)
T PF06574_consen 22 QKLIKKAVEIAKEKGLKSVVLTFDPH 47 (157)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEEESS-
T ss_pred HHHHHHHhhhhhhcccceEEEEcccC
Confidence 34899999999999999999999984
No 196
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=23.20 E-value=8.5e+02 Score=25.22 Aligned_cols=59 Identities=22% Similarity=0.227 Sum_probs=38.0
Q ss_pred cCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 109 MGESL-NDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 109 ~Ge~L-~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+|.++ +.|+++|+..|.. |..-+..+......+..+.++-...|-..--..|..|..++
T Consensus 771 l~sel~sqLt~ee~e~l~k-Ln~eI~~l~~kl~~~~~er~~~~~rk~~le~~l~~kL~~r~ 830 (1200)
T KOG0964|consen 771 LGSELFSQLTPEELERLSK-LNKEINKLSVKLRALREERIDIETRKTALEANLNTKLYKRV 830 (1200)
T ss_pred HhHHHHhhcCHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35555 8899999888874 55555566666666666666655555555555556666555
No 197
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=23.13 E-value=1.3e+02 Score=22.55 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=19.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHH
Q 028296 147 INTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 147 i~~l~kk~~~l~een~~L~~~~ 168 (211)
++.|.++...|+=||+.|++++
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl 26 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKL 26 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999999999999
No 198
>PF06020 Roughex: Drosophila roughex protein; InterPro: IPR009259 This family consists of several roughex (RUX) proteins specific to Drosophila species. Roughex can influence the intracellular distribution of cyclin A and is therefore defined as a distinct and specialised cell cycle inhibitor for cyclin A-dependent kinase activity []. Rux is though to regulate the metaphase to anaphase transition during development [].
Probab=23.04 E-value=43 Score=29.04 Aligned_cols=14 Identities=0% Similarity=0.161 Sum_probs=12.3
Q ss_pred hhcCCeEEEEEecC
Q 028296 37 ILCDAKVSILICSS 50 (211)
Q Consensus 37 vLCdaeva~Iifs~ 50 (211)
-+||+||||+||--
T Consensus 184 ~~~~~EICLavYek 197 (334)
T PF06020_consen 184 QVSGFEICLAVYEK 197 (334)
T ss_pred ccccceEEeeehhh
Confidence 47999999999975
No 199
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=22.72 E-value=4e+02 Score=21.24 Aligned_cols=46 Identities=26% Similarity=0.430 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhhHHHHHHHHHHHH
Q 028296 123 GLEQDILDGLKIIHECKDQVLAR--QINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 123 ~LE~~Le~~L~~Ir~RK~~ll~~--qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.|+..|...-+.+-.-+++++.= +...+..|.+.|++||..|..+.
T Consensus 134 ~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 134 DLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333433333333334444433 34668889999999999997765
No 200
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=22.71 E-value=2.2e+02 Score=20.83 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 143 LARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 143 l~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
..+++..|+++...|..|+..|++.+
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999998876
No 201
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=22.55 E-value=4.8e+02 Score=22.97 Aligned_cols=14 Identities=29% Similarity=0.195 Sum_probs=6.3
Q ss_pred HHhhhcCCeEEEEE
Q 028296 34 ELTILCDAKVSILI 47 (211)
Q Consensus 34 ELSvLCdaeva~Ii 47 (211)
+|+--||.+|.-.+
T Consensus 24 ~L~~~~~~~v~~~~ 37 (351)
T TIGR03156 24 ELAETAGAEVVGTV 37 (351)
T ss_pred HHHHHCCCEEEEEE
Confidence 33333355555433
No 202
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=22.31 E-value=2e+02 Score=24.60 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=32.7
Q ss_pred CeEEEEEecCCCccccccCCcchhHHHHHHHhhh----hccccchhhhHHhHhhHHHH
Q 028296 41 AKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT----LRVDLWSSHYEKMLENLGAV 94 (211)
Q Consensus 41 aeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~----~~~~~~~~~~e~lq~el~kL 94 (211)
-+||+|..|+.|+++.-.... ...=+.+||... +..-.|++...-|-.-+.++
T Consensus 23 ~~~c~~~~~~~~~~~~~~~e~-~~~i~~~k~~~~~~~~~~v~~~~~~l~pm~~~v~~~ 79 (323)
T KOG2702|consen 23 YRVCVILVGSPGSGKSTIAEE-LCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSL 79 (323)
T ss_pred cceEEEEecCCCccchhhHHH-HhHHHhhhhhHHhhcCCceEEecccchhHHHHHHHh
Confidence 479999999999988655443 234567888754 23345555544444444443
No 203
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=22.26 E-value=4e+02 Score=21.12 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=16.4
Q ss_pred cCCCccccccCCcchhHHHHHHHhh
Q 028296 49 SSTAKAHEYISPSTTTKQLLDLYQK 73 (211)
Q Consensus 49 s~~gkl~~~~sp~~~~~~ii~RY~~ 73 (211)
+.+++-|.|+|...+.+.|+....+
T Consensus 25 ~~~~r~y~f~s~~~~i~~ii~h~NN 49 (163)
T PF03233_consen 25 SSNDRRYVFSSVKGNIQSIINHCNN 49 (163)
T ss_pred CCCCceEEeecCCcchHHHHHHHhh
Confidence 3567788888866556666665543
No 204
>PHA00327 minor capsid protein
Probab=22.25 E-value=2.2e+02 Score=22.69 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=27.5
Q ss_pred cCCCccccccCCcchhHHHHHHHhhhhccccchhhhHHhHhhHHHHHHHHHHHH
Q 028296 49 SSTAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILK 102 (211)
Q Consensus 49 s~~gkl~~~~sp~~~~~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~ 102 (211)
||.| -++||...|+.-|.--... ..+.-+++.++.++.+|++++..++
T Consensus 88 sPsG---Ag~Sp~Np~eSglnSa~~v---~~l~~~~~r~~aelQnL~~q~r~in 135 (187)
T PHA00327 88 SPSG---AGWSPNNPVESGLNSALAV---QRLTYERKRMQAELQNLREQNRLIN 135 (187)
T ss_pred CCCC---CCCCCCCcHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4667 3445544555555433322 1223456677778888888777655
No 205
>PHA03162 hypothetical protein; Provisional
Probab=22.23 E-value=1.3e+02 Score=23.02 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=16.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHH
Q 028296 147 INTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 147 i~~l~kk~~~l~een~~L~~~~ 168 (211)
++.|.++...|+=||+.|++++
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777888888888888
No 206
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=22.15 E-value=3.8e+02 Score=26.51 Aligned_cols=21 Identities=24% Similarity=0.418 Sum_probs=15.1
Q ss_pred eEEEEEecCCCccccccCCcc
Q 028296 42 KVSILICSSTAKAHEYISPST 62 (211)
Q Consensus 42 eva~Iifs~~gkl~~~~sp~~ 62 (211)
++.|+.--..||-++|+||..
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~ 69 (762)
T PLN03229 49 DLAVVAKIRKGKKHEYPWPAD 69 (762)
T ss_pred ceEEEeeeccccccCCCCCCC
Confidence 455555556789999999864
No 207
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=22.09 E-value=1.5e+02 Score=22.60 Aligned_cols=19 Identities=11% Similarity=0.389 Sum_probs=11.0
Q ss_pred hHhhHHHHHHHHHHHHHHH
Q 028296 87 MLENLGAVEQVNRILKKQI 105 (211)
Q Consensus 87 lq~el~kLk~~~~~L~~~i 105 (211)
++.++++|+.+|..++.++
T Consensus 86 L~qqv~~L~~e~s~~~~E~ 104 (135)
T KOG4196|consen 86 LQQQVEKLKEENSRLRREL 104 (135)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4456666666666655543
No 208
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=22.06 E-value=3.9e+02 Score=20.86 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=10.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q 028296 148 NTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 148 ~~l~kk~~~l~een~~L~~~~ 168 (211)
...++|...+..++..+...+
T Consensus 80 ~h~keKl~~~~~~~~~l~~~l 100 (177)
T PF13870_consen 80 THVKEKLHFLSEELERLKQEL 100 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554443
No 209
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=21.98 E-value=3.4e+02 Score=21.14 Aligned_cols=29 Identities=28% Similarity=0.517 Sum_probs=24.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 028296 110 GESLNDLTLEELTGLEQDILDGLKIIHEC 138 (211)
Q Consensus 110 Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~R 138 (211)
+-||..||+++|..|.+++|.-+.-+..-
T Consensus 7 ~idltkLsleQL~~lk~q~dqEl~~lq~S 35 (153)
T KOG3048|consen 7 GIDLTKLSLEQLGALKKQFDQELNFLQDS 35 (153)
T ss_pred CCChhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999998877666544
No 210
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=21.75 E-value=99 Score=22.39 Aligned_cols=33 Identities=27% Similarity=0.441 Sum_probs=20.9
Q ss_pred HHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhh
Q 028296 30 KKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQK 73 (211)
Q Consensus 30 KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~ 73 (211)
.=|.+++.-++|. |+|+|+.+|. +-..+.||+-
T Consensus 6 ~aa~~~A~~~~ak-~Ivv~T~sG~----------ta~~isk~RP 38 (117)
T PF02887_consen 6 RAAVELAEDLNAK-AIVVFTESGR----------TARLISKYRP 38 (117)
T ss_dssp HHHHHHHHHHTES-EEEEE-SSSH----------HHHHHHHT-T
T ss_pred HHHHHHHHhcCCC-EEEEECCCch----------HHHHHHhhCC
Confidence 3466777778866 6888999883 2355666654
No 211
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.20 E-value=1.6e+02 Score=21.36 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=17.6
Q ss_pred hhhHHhHhhHHHHHHHHHHHHHHHHhh
Q 028296 82 SHYEKMLENLGAVEQVNRILKKQIRQR 108 (211)
Q Consensus 82 ~~~e~lq~el~kLk~~~~~L~~~ir~~ 108 (211)
.+++.++.++..++.+|..|+.++..+
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566667777777777777666543
No 212
>PHA02698 hypothetical protein; Provisional
Probab=21.17 E-value=2.5e+02 Score=19.33 Aligned_cols=17 Identities=24% Similarity=0.399 Sum_probs=10.8
Q ss_pred cccCCcchhHHHHHHHhh
Q 028296 56 EYISPSTTTKQLLDLYQK 73 (211)
Q Consensus 56 ~~~sp~~~~~~ii~RY~~ 73 (211)
+-|||. .|..+++.|..
T Consensus 39 ~~CsPE-dMs~mLD~FLe 55 (89)
T PHA02698 39 PQCSPE-DMSDMLDNFLE 55 (89)
T ss_pred ccCCHH-HHHHHHHHHHH
Confidence 356665 56677777754
No 213
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.17 E-value=4.4e+02 Score=21.13 Aligned_cols=22 Identities=23% Similarity=0.373 Sum_probs=10.9
Q ss_pred HHhHhhHHHHHHHHHHHHHHHH
Q 028296 85 EKMLENLGAVEQVNRILKKQIR 106 (211)
Q Consensus 85 e~lq~el~kLk~~~~~L~~~ir 106 (211)
+.++.++..++..+..++..+.
T Consensus 72 ~~l~~~~~~~~~~i~~l~~~i~ 93 (188)
T PF03962_consen 72 EKLQKEIEELEKKIEELEEKIE 93 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555443
No 214
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.15 E-value=3.6e+02 Score=20.12 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=20.4
Q ss_pred HHHHHHhhhhccccchhhhHHhHhhHHHHHHHHHHHHHHHH
Q 028296 66 QLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIR 106 (211)
Q Consensus 66 ~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~~ir 106 (211)
.+++++...- .....++..++.++..+...-+.+..++-
T Consensus 16 ~~ve~L~s~l--r~~E~E~~~l~~el~~l~~~r~~l~~Eiv 54 (120)
T PF12325_consen 16 QLVERLQSQL--RRLEGELASLQEELARLEAERDELREEIV 54 (120)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777776532 22333444555555555555555554443
No 215
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=21.05 E-value=83 Score=24.30 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.0
Q ss_pred HhhhcCCeEEEEEecCCCcccccc
Q 028296 35 LTILCDAKVSILICSSTAKAHEYI 58 (211)
Q Consensus 35 LSvLCdaeva~Iifs~~gkl~~~~ 58 (211)
+++-|||++-+++.+.+.....|+
T Consensus 58 i~ta~dad~V~ll~dat~~~~~~p 81 (143)
T PF10662_consen 58 IVTAQDADVVLLLQDATEPRSVFP 81 (143)
T ss_pred HHHHhhCCEEEEEecCCCCCccCC
Confidence 688899999999999986666664
No 216
>PHA03155 hypothetical protein; Provisional
Probab=20.94 E-value=1.4e+02 Score=22.13 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=15.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHH
Q 028296 147 INTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 147 i~~l~kk~~~l~een~~L~~~~ 168 (211)
++.|.++...|+=||+.|++++
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777888888877
No 217
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=20.90 E-value=1.6e+02 Score=18.52 Aligned_cols=17 Identities=29% Similarity=0.200 Sum_probs=10.2
Q ss_pred CCCCCHHHHHHHHHHHH
Q 028296 113 LNDLTLEELTGLEQDIL 129 (211)
Q Consensus 113 L~~Ls~~EL~~LE~~Le 129 (211)
|..+|++||+..-..|+
T Consensus 5 Lk~ls~~eL~~rl~~LD 21 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLD 21 (49)
T ss_dssp GGGS-HHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCC
Confidence 55788888876544443
No 218
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=20.76 E-value=1.1e+02 Score=18.71 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 139 KDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 139 K~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
....+.-.|..+.++...|..||..|+..+
T Consensus 15 ~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 15 RNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------HHHHHHHHHHHHHHH
T ss_pred HhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 344556677888888888888998888775
No 219
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.63 E-value=2.2e+02 Score=17.38 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 138 CKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 138 RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+-...+...-+.|+..-..|..+|..|+.++
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev 35 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEV 35 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777788888888888888888877
No 220
>cd04788 HTH_NolA-AlbR Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=20.62 E-value=2.3e+02 Score=19.83 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQ 158 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~ 158 (211)
+++++|+..+-...+. ...+++.+++..+.++...|.
T Consensus 57 G~~l~eI~~~l~~~~~-------~~~~~l~~~~~~l~~~i~~l~ 93 (96)
T cd04788 57 GFSLREIGRALDGPDF-------DPLELLRRQLARLEEQLELAT 93 (96)
T ss_pred CCCHHHHHHHHhCCCh-------hHHHHHHHHHHHHHHHHHHHH
Confidence 6788888776543221 223345555555555555443
Done!