Query 028296
Match_columns 211
No_of_seqs 199 out of 1536
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 15:13:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 6.5E-39 2.2E-43 221.2 5.7 72 2-75 1-72 (77)
2 3p57_A Myocyte-specific enhanc 100.0 2.3E-38 7.8E-43 223.7 5.3 73 2-76 1-73 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 5.6E-37 1.9E-41 220.2 4.4 78 1-83 16-93 (100)
4 1hbx_A SRF, serum response fac 100.0 9.5E-37 3.3E-41 216.3 3.1 71 1-73 10-80 (92)
5 1k6o_B SRF, serum response fac 100.0 4E-36 1.4E-40 217.0 3.5 70 1-72 9-78 (103)
6 1dip_A Delta-sleep-inducing pe 83.3 1.7 5.9E-05 28.6 4.2 28 141-168 18-45 (78)
7 1ytz_T Troponin T; muscle, THI 80.5 4.2 0.00015 28.9 5.9 51 110-168 36-86 (107)
8 3nmd_A CGMP dependent protein 80.2 10 0.00035 24.9 7.4 49 113-168 15-63 (72)
9 2w6a_A ARF GTPase-activating p 78.7 9.8 0.00034 23.9 8.4 53 114-166 8-62 (63)
10 2jee_A YIIU; FTSZ, septum, coi 78.5 13 0.00043 25.0 8.6 43 116-163 3-45 (81)
11 1j1d_B Troponin T, TNT; THIN f 77.7 4.1 0.00014 28.9 5.0 32 112-143 38-69 (106)
12 2dgc_A Protein (GCN4); basic d 75.5 8.8 0.0003 24.4 5.7 33 132-168 21-53 (63)
13 1dh3_A Transcription factor CR 74.4 10 0.00036 23.3 5.7 32 133-168 14-45 (55)
14 3s9g_A Protein hexim1; cyclin 73.4 19 0.00066 25.0 7.3 53 115-168 29-88 (104)
15 2oa5_A Hypothetical protein BQ 72.3 18 0.00063 25.6 7.2 70 83-155 9-80 (110)
16 1j1d_C Troponin I, TNI; THIN f 71.5 27 0.00094 25.6 11.8 34 110-143 52-85 (133)
17 2yy0_A C-MYC-binding protein; 71.2 8.8 0.0003 23.6 4.8 27 142-168 23-49 (53)
18 2l5g_B Putative uncharacterize 69.3 14 0.00049 21.5 5.5 38 115-160 1-38 (42)
19 2oqq_A Transcription factor HY 67.1 16 0.00055 21.2 5.3 26 143-168 15-40 (42)
20 2wt7_A Proto-oncogene protein 66.5 18 0.00062 22.7 5.7 32 133-168 15-46 (63)
21 1t2k_D Cyclic-AMP-dependent tr 66.4 19 0.00064 22.5 5.7 32 133-168 14-45 (61)
22 1jnm_A Proto-oncogene C-JUN; B 64.4 21 0.00073 22.3 5.7 33 132-168 13-45 (62)
23 1ci6_A Transcription factor AT 62.1 25 0.00085 22.2 5.7 24 145-168 23-46 (63)
24 1j1e_C Troponin I, TNI; THIN f 60.9 55 0.0019 25.2 10.7 34 111-144 53-86 (180)
25 2dfs_A Myosin-5A; myosin-V, in 60.7 84 0.0029 30.9 11.8 21 148-168 1019-1039(1080)
26 3gp4_A Transcriptional regulat 58.2 42 0.0014 24.5 7.3 53 115-168 59-111 (142)
27 1a93_B MAX protein, coiled coi 56.4 18 0.00061 20.1 3.6 25 138-162 7-31 (34)
28 3hnw_A Uncharacterized protein 56.0 57 0.002 23.9 10.9 16 43-61 10-25 (138)
29 2l16_A SEC-independent protein 54.7 0.46 1.6E-05 32.0 -3.7 29 43-75 16-44 (78)
30 3hnw_A Uncharacterized protein 54.4 61 0.0021 23.7 8.3 24 145-168 110-133 (138)
31 4gfh_A DNA topoisomerase 2; to 54.3 1.4E+02 0.0047 29.7 12.1 44 25-74 957-1000(1177)
32 1gd2_E Transcription factor PA 52.6 37 0.0013 22.0 5.4 39 130-168 18-59 (70)
33 3na7_A HP0958; flagellar bioge 49.7 83 0.0028 25.2 8.4 50 117-166 88-139 (256)
34 2oxj_A Hybrid alpha/beta pepti 49.4 19 0.00064 19.9 2.9 22 147-168 3-24 (34)
35 3gpv_A Transcriptional regulat 49.2 70 0.0024 23.3 7.3 53 115-168 73-125 (148)
36 2rpa_A Katanin P60 ATPase-cont 48.6 6.5 0.00022 26.2 1.2 35 29-76 16-50 (78)
37 1q08_A Zn(II)-responsive regul 48.2 49 0.0017 22.0 5.9 53 115-168 16-69 (99)
38 3qx3_A DNA topoisomerase 2-bet 47.3 1.9E+02 0.0066 27.4 12.6 26 45-74 598-623 (803)
39 1go4_E MAD1 (mitotic arrest de 47.3 11 0.00038 26.4 2.3 21 85-105 22-42 (100)
40 2l5g_A GPS2 protein, G protein 47.2 27 0.00093 19.7 3.5 20 145-164 15-34 (38)
41 3ghg_A Fibrinogen alpha chain; 47.0 1.6E+02 0.0056 26.5 11.6 41 127-168 114-154 (562)
42 3m48_A General control protein 45.1 20 0.00068 19.7 2.6 21 148-168 3-23 (33)
43 1go4_E MAD1 (mitotic arrest de 43.6 30 0.001 24.1 4.1 24 145-168 12-35 (100)
44 2dfs_A Myosin-5A; myosin-V, in 43.6 1.9E+02 0.0064 28.5 11.1 8 144-151 1036-1043(1080)
45 1m2d_A [2Fe-2S] ferredoxin; th 43.0 9.3 0.00032 26.7 1.4 33 39-73 59-91 (110)
46 1t2k_D Cyclic-AMP-dependent tr 42.9 57 0.002 20.1 5.3 29 140-168 31-59 (61)
47 1kd8_B GABH BLL, GCN4 acid bas 42.6 27 0.00093 19.5 2.9 18 149-166 5-22 (36)
48 3oja_A Leucine-rich immune mol 42.5 1.7E+02 0.0057 25.3 12.0 37 128-168 422-458 (487)
49 1deq_A Fibrinogen (alpha chain 41.2 1.7E+02 0.0059 25.2 11.8 57 28-95 23-80 (390)
50 1ci6_A Transcription factor AT 39.5 69 0.0023 20.0 5.3 28 141-168 33-60 (63)
51 3c3f_A Alpha/beta peptide with 39.5 33 0.0011 18.9 2.9 22 147-168 3-24 (34)
52 3oja_B Anopheles plasmodium-re 38.6 1.8E+02 0.006 25.8 9.6 23 146-168 552-574 (597)
53 1ytz_I Troponin I; muscle, THI 38.6 1.3E+02 0.0046 23.1 9.4 33 110-143 50-82 (182)
54 3q4f_C DNA repair protein XRCC 37.9 34 0.0011 26.5 3.9 25 144-168 160-184 (186)
55 1m1j_B Fibrinogen beta chain; 37.2 1.6E+02 0.0056 26.0 8.8 43 27-74 55-97 (464)
56 1fxk_A Prefoldin; archaeal pro 35.9 99 0.0034 20.8 10.4 34 134-168 69-102 (107)
57 3nrf_A APAG protein; structura 34.1 1.4 4.9E-05 31.1 -4.0 42 11-57 21-62 (106)
58 1gk7_A Vimentin; intermediate 34.0 66 0.0023 18.2 4.8 25 144-168 12-36 (39)
59 3hvz_A Uncharacterized protein 33.6 30 0.001 22.7 2.7 26 44-70 7-32 (78)
60 1m1j_C Fibrinogen gamma chain; 33.6 2.4E+02 0.0081 24.5 13.6 59 51-111 12-70 (409)
61 1g6u_A Domain swapped dimer; d 32.9 71 0.0024 18.3 6.9 18 114-131 15-32 (48)
62 2xus_A Breast cancer metastasi 31.7 86 0.0029 18.8 5.4 33 118-157 12-44 (49)
63 2bni_A General control protein 31.3 48 0.0017 18.3 2.8 21 148-168 4-24 (34)
64 3na7_A HP0958; flagellar bioge 31.0 2E+02 0.0068 22.8 12.0 44 66-109 74-117 (256)
65 3oja_B Anopheles plasmodium-re 30.0 2.9E+02 0.0098 24.3 13.3 28 139-166 524-551 (597)
66 3c3g_A Alpha/beta peptide with 29.9 73 0.0025 17.4 3.5 20 149-168 4-23 (33)
67 2zqm_A Prefoldin beta subunit 28.9 1.4E+02 0.0048 20.4 11.1 38 130-168 70-107 (117)
68 1t6f_A Geminin; coiled-coil, c 28.7 62 0.0021 18.1 3.0 19 84-102 16-34 (37)
69 3mq7_A Bone marrow stromal ant 28.3 1.6E+02 0.0056 20.9 7.6 30 139-168 72-101 (121)
70 3w03_C DNA repair protein XRCC 27.6 66 0.0022 24.9 4.1 34 134-168 142-175 (184)
71 2hy6_A General control protein 27.0 64 0.0022 17.8 2.8 21 148-168 4-24 (34)
72 1a0r_P Phosducin, MEKA, PP33; 26.8 84 0.0029 25.0 4.8 35 111-145 67-103 (245)
73 1kd8_A GABH AIV, GCN4 acid bas 26.5 46 0.0016 18.6 2.2 15 150-164 6-20 (36)
74 1nkp_B MAX protein, MYC proto- 26.0 1.1E+02 0.0038 19.9 4.6 25 144-168 53-77 (83)
75 2aze_A Transcription factor DP 25.7 2.1E+02 0.0072 21.4 7.9 47 117-165 3-49 (155)
76 1deb_A APC protein, adenomatou 25.2 87 0.003 18.9 3.4 19 150-168 8-26 (54)
77 1r8e_A Multidrug-efflux transp 23.9 1.6E+02 0.0054 23.2 6.0 47 115-161 63-109 (278)
78 1uo4_A General control protein 23.8 79 0.0027 17.4 2.8 21 148-168 4-24 (34)
79 2ky6_A Mediator of RNA polymer 23.8 61 0.0021 24.6 3.1 23 36-58 116-139 (166)
80 1gu4_A CAAT/enhancer binding p 23.8 1.6E+02 0.0054 19.3 6.0 22 147-168 38-59 (78)
81 3oa7_A Head morphogenesis prot 23.3 1.2E+02 0.0043 23.6 4.9 40 82-121 44-83 (206)
82 1q06_A Transcriptional regulat 23.1 2E+02 0.0067 20.4 5.9 53 115-168 57-109 (135)
83 3goe_A DNA repair protein RAD6 23.1 88 0.003 20.9 3.4 34 43-76 10-44 (82)
84 1zbd_B Rabphilin-3A; G protein 22.1 1.8E+02 0.0063 20.9 5.5 20 110-129 4-23 (134)
85 2ke4_A CDC42-interacting prote 21.8 1.8E+02 0.0062 19.8 5.1 37 142-180 19-55 (98)
86 1z0k_B FYVE-finger-containing 21.7 1.7E+02 0.0058 18.8 5.0 19 144-162 45-63 (69)
87 3swk_A Vimentin; cytoskeleton, 21.7 1.4E+02 0.0046 19.9 4.3 39 126-165 45-83 (86)
88 1hjb_A Ccaat/enhancer binding 21.2 1.9E+02 0.0066 19.3 5.4 25 144-168 49-73 (87)
89 3a7p_A Autophagy protein 16; c 21.1 2.6E+02 0.0089 20.8 11.4 47 122-168 85-133 (152)
90 3ghg_A Fibrinogen alpha chain; 21.0 3.9E+02 0.013 24.1 8.2 48 85-132 134-189 (562)
91 1a92_A Delta antigen; leucine 20.5 1.1E+02 0.0037 18.3 3.1 18 144-161 20-37 (50)
92 1z56_A Ligase interacting fact 20.3 1.8E+02 0.0061 23.4 5.4 61 9-75 117-177 (246)
93 3v1a_A Computational design, M 20.1 1.5E+02 0.0051 17.6 3.7 28 135-162 17-44 (48)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=6.5e-39 Score=221.22 Aligned_cols=72 Identities=42% Similarity=0.698 Sum_probs=68.9
Q ss_pred CccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhh
Q 028296 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTL 75 (211)
Q Consensus 2 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~ 75 (211)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+|| +|++||+||+..+
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~--~~~~il~ry~~~~ 72 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEYN 72 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHC-
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCC--CHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999999987 4899999999865
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=2.3e-38 Score=223.72 Aligned_cols=73 Identities=41% Similarity=0.690 Sum_probs=70.4
Q ss_pred CccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhhc
Q 028296 2 GRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (211)
Q Consensus 2 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~ 76 (211)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+|| +|..||+||+..+.
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~--~~~~il~rY~~~~~ 73 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEYNE 73 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHCCS
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCC--CHHHHHHHHHhcCc
Confidence 89999999999999999999999999999999999999999999999999999999996 58999999998765
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=5.6e-37 Score=220.16 Aligned_cols=78 Identities=36% Similarity=0.523 Sum_probs=71.2
Q ss_pred CCccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhhccccc
Q 028296 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLRVDLW 80 (211)
Q Consensus 1 MgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~~~~~ 80 (211)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+ +..|+++|.. .++|
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps--~~~il~r~~G---~~lw 90 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK--FEPIVTQQEG---RNLI 90 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT--TTHHHHSHHH---HHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCC--HHHHHHHhhC---CcHH
Confidence 8999999999999999999999999999999999999999999999999999999999995 5799988864 3455
Q ss_pred hhh
Q 028296 81 SSH 83 (211)
Q Consensus 81 ~~~ 83 (211)
+..
T Consensus 91 ~~c 93 (100)
T 1mnm_A 91 QAC 93 (100)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=9.5e-37 Score=216.26 Aligned_cols=71 Identities=32% Similarity=0.484 Sum_probs=67.5
Q ss_pred CCccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhh
Q 028296 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQK 73 (211)
Q Consensus 1 MgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~ 73 (211)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+||+ |..+|++|..
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~--~~~~i~~~~G 80 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSETG 80 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGG--GGGGTSSHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCC--HHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999985 7899997653
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=4e-36 Score=217.04 Aligned_cols=70 Identities=33% Similarity=0.496 Sum_probs=66.7
Q ss_pred CCccccceeeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHh
Q 028296 1 MGRGKMEMKRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQ 72 (211)
Q Consensus 1 MgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~ 72 (211)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|++|+ |..||+++.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~--~~~vi~~~~ 78 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK--LQPMITSET 78 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGG--GGGGTSSHH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCcc--HHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999984 789998653
No 6
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=83.34 E-value=1.7 Score=28.64 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 141 QVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 141 ~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.++.++|..|..+...|+.||..|+.-.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4678889999999999999998887755
No 7
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=80.54 E-value=4.2 Score=28.87 Aligned_cols=51 Identities=14% Similarity=0.196 Sum_probs=38.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 110 GESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 110 Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
--++++||.++|+.+-..|-..+..+-+-|+.+-. +++.-.-+.+.|..++
T Consensus 36 pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~--------kv~kq~yEI~eL~~rV 86 (107)
T 1ytz_T 36 PLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE--------QIKRKKYEIVTLRNRI 86 (107)
T ss_dssp CCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHH--------HHHhhhhHHHHHHHHH
Confidence 34799999999999999999999999998877633 3333334455566666
No 8
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=80.18 E-value=10 Score=24.91 Aligned_cols=49 Identities=10% Similarity=0.173 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 113 LNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 113 L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+++++. +.+|+..|..+...||.+- +.|..+.+......++...|+.++
T Consensus 15 ~~~mgt--i~eLq~~L~~K~eELr~kd-----~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 15 IEGRGS--LRDLQYALQEKIEELRQRD-----ALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp ----CH--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCc--HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 8888888999988888863 336677788888888888888887
No 9
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=78.74 E-value=9.8 Score=23.92 Aligned_cols=53 Identities=19% Similarity=0.349 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 028296 114 NDLTLEELTGLEQDILDGLKIIHE--CKDQVLARQINTFKRKVRGVQKENKSLQD 166 (211)
Q Consensus 114 ~~Ls~~EL~~LE~~Le~~L~~Ir~--RK~~ll~~qi~~l~kk~~~l~een~~L~~ 166 (211)
+..++.|..++...|-.+=.+|.. +-+.-+.+++..+++++..|+.||..|++
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 356788888877766665554432 12233467788899999999999998874
No 10
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=78.52 E-value=13 Score=25.03 Aligned_cols=43 Identities=23% Similarity=0.412 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 028296 116 LTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKS 163 (211)
Q Consensus 116 Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~ 163 (211)
+|++=|.+||..+..++..|- ++..+|+.|+.|...|.+++..
T Consensus 3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999988774 4445566666665554444443
No 11
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=77.73 E-value=4.1 Score=28.91 Aligned_cols=32 Identities=9% Similarity=0.184 Sum_probs=29.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028296 112 SLNDLTLEELTGLEQDILDGLKIIHECKDQVL 143 (211)
Q Consensus 112 ~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll 143 (211)
+|++||.++|+.+-..|-..+..+-+-|+.+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 68999999999999999999999999988763
No 12
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=75.48 E-value=8.8 Score=24.40 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 132 LKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 132 L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
-...|.||. +.+..|..++..|..+|..|...+
T Consensus 21 ArrsR~RK~----~~~~~Le~~v~~L~~eN~~L~~ev 53 (63)
T 2dgc_A 21 ARRSRARKL----QRMKQLEDKVEELLSKNYHLENEV 53 (63)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566663 456789999999999999999988
No 13
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=74.40 E-value=10 Score=23.34 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 133 KIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 133 ~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
..-|.||. ..++.|..++..|+.+|..|..++
T Consensus 14 ~rSR~RKk----~~~~~LE~~v~~L~~eN~~L~~~~ 45 (55)
T 1dh3_A 14 RESRRKKK----EYVKSLENRVAVLENQNKTLIEEL 45 (55)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456664 446789999999999999999998
No 14
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=73.38 E-value=19 Score=24.98 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKII-------HECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~I-------r~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|-.||.+=--.|+..+..+ |.. .+-...+|..|..++..|..+|..|+..-
T Consensus 29 ~mSKqELIqEYl~LE~~~s~le~e~~rlr~~-~~~~~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 29 NMSKQELIKEYLELEKSLSRMEDENNRLRLE-SKRLDARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 556555554444444444444 221 11224578889999999999999998876
No 15
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=72.28 E-value=18 Score=25.60 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=45.1
Q ss_pred hhHHhHhhHHHHHHHHHHHHHHHHhh--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028296 83 HYEKMLENLGAVEQVNRILKKQIRQR--MGESLNDLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVR 155 (211)
Q Consensus 83 ~~e~lq~el~kLk~~~~~L~~~ir~~--~Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~ 155 (211)
..+.|..++.+|+-+|..|++.++.- .+.+-.-|+..+=..+-...-.+|...-.+| |...+...-.+..
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~K---Ie~kVr~~ta~~v 80 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK---IEAKVRSRAAKAV 80 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccc
Confidence 45778889999999999999988752 2245677899888777666666666555544 4445545444443
No 16
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=71.51 E-value=27 Score=25.60 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=30.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028296 110 GESLNDLTLEELTGLEQDILDGLKIIHECKDQVL 143 (211)
Q Consensus 110 Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll 143 (211)
.-++++||.++|+.+-..|-..+..+-+-|+.+-
T Consensus 52 pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE 85 (133)
T 1j1d_C 52 PLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (133)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3479999999999999999999999999988773
No 17
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=71.17 E-value=8.8 Score=23.58 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 142 VLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 142 ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.|..++..|+.|...|.+++..|..++
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677889999999999999998888
No 18
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=69.25 E-value=14 Score=21.48 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKE 160 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~ee 160 (211)
++|-+||.+--..++.-+..++ ++|..|++|.+.|++.
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte--------~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVE--------QQISKLKKKQQQLEEE 38 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHh
Confidence 3566676665555555554444 4577888888888775
No 19
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=67.06 E-value=16 Score=21.23 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 143 LARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 143 l~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+...+..|..++.-|+.||..|++-+
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 34556778888888999999888765
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=66.51 E-value=18 Score=22.74 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 133 KIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 133 ~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
..-|.||.+. +..|..++..|..+|..|...+
T Consensus 15 ~rcR~rKk~~----~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 15 AKCRNRRREL----TDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666444 6688888888888888888887
No 21
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=66.39 E-value=19 Score=22.46 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 133 KIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 133 ~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
...|.||.+ .+..|..++..|..+|..|..++
T Consensus 14 ~k~R~rKk~----~~~~Le~~~~~L~~~n~~L~~~i 45 (61)
T 1t2k_D 14 SRSRQKRKV----WVQSLEKKAEDLSSLNGQLQSEV 45 (61)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666644 35678888888888888888877
No 22
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=64.35 E-value=21 Score=22.28 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 132 LKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 132 L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
-..-|.||.+ .+..|..++..|..+|..|..++
T Consensus 13 A~k~R~rKk~----~~~~Le~~v~~L~~~n~~L~~~v 45 (62)
T 1jnm_A 13 ASKSRKRKLE----RIARLEEKVKTLKAQNSELASTA 45 (62)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666644 46689999999999999998888
No 23
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=62.07 E-value=25 Score=22.15 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 145 RQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 145 ~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+.+..|..++..|..+|..|..++
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i 46 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERA 46 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777777666
No 24
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=60.89 E-value=55 Score=25.23 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=30.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028296 111 ESLNDLTLEELTGLEQDILDGLKIIHECKDQVLA 144 (211)
Q Consensus 111 e~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~ 144 (211)
-+|++||.++|+.+-..|-..+..+-+-|+.+-.
T Consensus 53 Lnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE~ 86 (180)
T 1j1e_C 53 LELAGLGFAELQDLARQLHARVDKVDEERYDIEA 86 (180)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4899999999999999999999999999887743
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=60.71 E-value=84 Score=30.89 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=16.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q 028296 148 NTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 148 ~~l~kk~~~l~een~~L~~~~ 168 (211)
+.|+.|+..|+++|..|++++
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~ 1039 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEK 1039 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888887766
No 26
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=58.17 E-value=42 Score=24.46 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++++..+-...+..-..+..+ ..++.+++..+.++...|+.....|...+
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~i 111 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKI 111 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999888776554433223322 34666777777777777777777666665
No 27
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=56.44 E-value=18 Score=20.14 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH
Q 028296 138 CKDQVLARQINTFKRKVRGVQKENK 162 (211)
Q Consensus 138 RK~~ll~~qi~~l~kk~~~l~een~ 162 (211)
||..--...|+.|+++...|+++-.
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 5666667777777777666666543
No 28
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=56.04 E-value=57 Score=23.89 Aligned_cols=16 Identities=6% Similarity=0.061 Sum_probs=9.1
Q ss_pred EEEEEecCCCccccccCCc
Q 028296 43 VSILICSSTAKAHEYISPS 61 (211)
Q Consensus 43 va~Iifs~~gkl~~~~sp~ 61 (211)
|-|.|+ |+.|....|.
T Consensus 10 V~V~I~---Gk~Y~i~g~e 25 (138)
T 3hnw_A 10 AEVILG---GKVIKLGGYE 25 (138)
T ss_dssp EEEEET---TEEEEECSCS
T ss_pred eEEEEC---CEEEEecCCC
Confidence 444444 6667766654
No 29
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=54.74 E-value=0.46 Score=31.98 Aligned_cols=29 Identities=14% Similarity=0.203 Sum_probs=21.6
Q ss_pred EEEEEecCCCccccccCCcchhHHHHHHHhhhh
Q 028296 43 VSILICSSTAKAHEYISPSTTTKQLLDLYQKTL 75 (211)
Q Consensus 43 va~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~ 75 (211)
||+|||+| +|+++.+. ++-+.+..|++..
T Consensus 16 VaLlvfGp-kkLP~l~r---~lGk~ir~fK~~~ 44 (78)
T 2l16_A 16 IALIIFGP-SKLPEIGR---AAGRTLLEFKSAT 44 (78)
T ss_dssp HHHHHSCT-TTHHHHHH---HHHHHHHHHHHHH
T ss_pred HHhheeCc-cHhHHHHH---HHHHHHHHHHHHH
Confidence 67899999 58888764 4567777777654
No 30
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.36 E-value=61 Score=23.73 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=11.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 145 RQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 145 ~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.++..++++...|++++..|...+
T Consensus 110 ~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 110 KEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555554444433
No 31
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=54.28 E-value=1.4e+02 Score=29.74 Aligned_cols=44 Identities=14% Similarity=0.304 Sum_probs=29.2
Q ss_pred hccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhh
Q 028296 25 RNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (211)
Q Consensus 25 r~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~ 74 (211)
.++|+|.- .|.+-.++ ..+++|.+.|++..|.+ +++||..|-.+
T Consensus 957 ~~~L~k~t-~L~~s~~~-~Nm~~~d~~g~i~k~~~----l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 957 KIGFYERF-KLISPISL-MNMVAFDPHGKIKKYNS----VNEILSEFYYV 1000 (1177)
T ss_dssp HHCHHHHT-TCEEEECC-SCCEEECTTSCEEECSS----HHHHHHHHHHH
T ss_pred HHhHHHhc-cCcceecc-eEEEEEcCCCCccCcCC----HHHHHHHHHHH
Confidence 35666553 34433332 14788999999998865 57899988665
No 32
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=52.56 E-value=37 Score=21.98 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHH
Q 028296 130 DGLKIIHECKDQVLAR---QINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 130 ~~L~~Ir~RK~~ll~~---qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.+-..+|+||.+-+.+ ++..|......+..+|..|+..+
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i 59 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKV 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777655442 33444444444455566665555
No 33
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=49.67 E-value=83 Score=25.17 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHH
Q 028296 117 TLEELTGLEQDILDGLKIIHECKDQVL--ARQINTFKRKVRGVQKENKSLQD 166 (211)
Q Consensus 117 s~~EL~~LE~~Le~~L~~Ir~RK~~ll--~~qi~~l~kk~~~l~een~~L~~ 166 (211)
+.+|+..|...++..-..+...-.+++ +++++.++.....+......+..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~ 139 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEK 139 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888866655544433332 34454444444444444444433
No 34
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=49.41 E-value=19 Score=19.93 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=13.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHH
Q 028296 147 INTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 147 i~~l~kk~~~l~een~~L~~~~ 168 (211)
+.+|..|+..|..+|..|..++
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV 24 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHH
Confidence 4455666666666666665554
No 35
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=49.22 E-value=70 Score=23.33 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++++..+-...+..-..+.. ...++.+++..+.++...|+.....|...+
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i 125 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILH-RLKLMKQQEANVLQLIQDTEKNLKKIQQKI 125 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999988887654433222322 235677888888888888888888887777
No 36
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=48.63 E-value=6.5 Score=26.25 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=27.3
Q ss_pred HHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhhc
Q 028296 29 FKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTLR 76 (211)
Q Consensus 29 ~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~~ 76 (211)
+|+|+|.+.+++=|.|++.|.. +-.-|+||.....
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g-------------~~~qI~k~l~~~~ 50 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQG-------------VLDQMNKYLYSVK 50 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHH-------------HHHHHHHHHHTCS
T ss_pred HHHHHHHHHhcChHHHHHHHHH-------------HHHHHHHHHHhcC
Confidence 6899999999998888776654 4577888876643
No 37
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=48.17 E-value=49 Score=22.01 Aligned_cols=53 Identities=15% Similarity=0.196 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLK-IIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~-~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
|+|++|+..+-...+..-. .+ ..-..++.+++..+.++...|+.....|...+
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~-~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~ 69 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTC-QESKGIVQERLQEVEARIAELQSMQRSLQRLN 69 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCcccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999888764432110 11 12345777888888888888888877777776
No 38
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=47.34 E-value=1.9e+02 Score=27.43 Aligned_cols=26 Identities=8% Similarity=0.252 Sum_probs=19.9
Q ss_pred EEEecCCCccccccCCcchhHHHHHHHhhh
Q 028296 45 ILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (211)
Q Consensus 45 ~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~ 74 (211)
+++|.+.|++..|.+ +++||..|-.+
T Consensus 598 ~~l~d~~g~~pk~~~----l~eiL~~F~~~ 623 (803)
T 3qx3_A 598 MVLFDHMGCLKKYET----VQDILKEFFDL 623 (803)
T ss_dssp EEEECTTSCEEEESC----HHHHHHHHHHH
T ss_pred EEEECCCCCcceeCC----HHHHHHHHHHH
Confidence 467888888888854 57899999765
No 39
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=47.27 E-value=11 Score=26.36 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=9.8
Q ss_pred HHhHhhHHHHHHHHHHHHHHH
Q 028296 85 EKMLENLGAVEQVNRILKKQI 105 (211)
Q Consensus 85 e~lq~el~kLk~~~~~L~~~i 105 (211)
+.|..+-+.|+++++.|+.++
T Consensus 22 ~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 22 EELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444454454444444
No 40
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=47.22 E-value=27 Score=19.72 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=12.8
Q ss_pred HHHHHHHHhhhhHHHHHHHH
Q 028296 145 RQINTFKRKVRGVQKENKSL 164 (211)
Q Consensus 145 ~qi~~l~kk~~~l~een~~L 164 (211)
+||..|+.|...|.+|--.|
T Consensus 15 eQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666777777666665554
No 41
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.99 E-value=1.6e+02 Score=26.52 Aligned_cols=41 Identities=15% Similarity=0.274 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 127 DILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 127 ~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.|+..+..|+.+-+-.+ .+|..||.-++.+..+-++|.-.|
T Consensus 114 ELRRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666655555 667777777777777777777766
No 42
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=45.13 E-value=20 Score=19.75 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=13.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q 028296 148 NTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 148 ~~l~kk~~~l~een~~L~~~~ 168 (211)
++|..|+..|..+|..|...+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV 23 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEV 23 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHH
Confidence 455666666777777666655
No 43
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=43.64 E-value=30 Score=24.12 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 145 RQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 145 ~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++++.+++++..|+.||..|++++
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~ 35 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEK 35 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888888776
No 44
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=43.56 E-value=1.9e+02 Score=28.47 Aligned_cols=8 Identities=0% Similarity=0.111 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 028296 144 ARQINTFK 151 (211)
Q Consensus 144 ~~qi~~l~ 151 (211)
.+|++.|.
T Consensus 1036 ~qq~~~l~ 1043 (1080)
T 2dfs_A 1036 KTEKEELN 1043 (1080)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444433
No 45
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=43.01 E-value=9.3 Score=26.68 Aligned_cols=33 Identities=6% Similarity=0.090 Sum_probs=24.4
Q ss_pred cCCeEEEEEecCCCccccccCCcchhHHHHHHHhh
Q 028296 39 CDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQK 73 (211)
Q Consensus 39 Cdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~ 73 (211)
|+---.|+|+ |+|..|...+|. ++.+|++.+..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e-~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPE-DVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGG-GHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHH-HHHHHHHHHHH
Confidence 4444445555 889899888886 79999998753
No 46
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=42.91 E-value=57 Score=20.09 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 140 DQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 140 ~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
...+..+...|+.++..|.+++..|+..+
T Consensus 31 ~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 31 AEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456667778888888888888887765
No 47
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=42.61 E-value=27 Score=19.53 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=7.2
Q ss_pred HHHHhhhhHHHHHHHHHH
Q 028296 149 TFKRKVRGVQKENKSLQD 166 (211)
Q Consensus 149 ~l~kk~~~l~een~~L~~ 166 (211)
+|..|+..|..+|..|..
T Consensus 5 QLE~KVEeLl~~~~~Le~ 22 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKN 22 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 333444444444443333
No 48
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.48 E-value=1.7e+02 Score=25.32 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 128 ILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 128 Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+...+...|.+. ....+..+..+..+.++++++...+
T Consensus 422 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (487)
T 3oja_A 422 MYVEQQSVQNNA----IRDWDMYQHKETQLAEENARLKKLN 458 (487)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc----hhhhhhhhhHHHHHHHHhhhhhhhh
Confidence 334444444443 3334455666666666666666655
No 49
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=41.24 E-value=1.7e+02 Score=25.17 Aligned_cols=57 Identities=14% Similarity=0.109 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhcCCeEEEEEecCCCcccc-ccCCcchhHHHHHHHhhhhccccchhhhHHhHhhHHHHH
Q 028296 28 LFKKARELTILCDAKVSILICSSTAKAHE-YISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVE 95 (211)
Q Consensus 28 L~KKA~ELSvLCdaeva~Iifs~~gkl~~-~~sp~~~~~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk 95 (211)
++-+|+.-|---|+..|+ +..+=. .++-+ .|+.+|++..+. +...++.|++.|..+.
T Consensus 23 ~vE~~~s~Ck~~d~~~C~-----DeDwG~kCPsGC-rLqg~Ldk~er~-----~~~rIe~L~~~L~~~s 80 (390)
T 1deq_A 23 LVERQQSACKETGWPFCS-----DEDWNTKCPSGC-RMKGLIDEVDQD-----FTSRINKLRDSLFNYQ 80 (390)
T ss_pred hhhhhccccCCCCCCCCc-----hhhccCCCCccc-hHHHHHHHhhhh-----HHHHHHHHHHHHHHHH
Confidence 334555544444566665 222222 22233 688999888642 2334455555554443
No 50
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.51 E-value=69 Score=20.02 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 141 QVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 141 ~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+-+..+...|+.++..|+.|+..|+.-+
T Consensus 33 ~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 33 KELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666677777777666544
No 51
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=39.50 E-value=33 Score=18.89 Aligned_cols=22 Identities=5% Similarity=0.131 Sum_probs=11.7
Q ss_pred HHHHHHhhhhHHHHHHHHHHHH
Q 028296 147 INTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 147 i~~l~kk~~~l~een~~L~~~~ 168 (211)
+++|..|+..|..+|..|...+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV 24 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEX 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHH
Confidence 3445555555555555555544
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.65 E-value=1.8e+02 Score=25.76 Aligned_cols=23 Identities=13% Similarity=0.198 Sum_probs=12.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Q 028296 146 QINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 146 qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+++..+++...+.+++..+..++
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~ 574 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKV 574 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHH
Confidence 33444445555556666665555
No 53
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=38.56 E-value=1.3e+02 Score=23.09 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=28.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028296 110 GESLNDLTLEELTGLEQDILDGLKIIHECKDQVL 143 (211)
Q Consensus 110 Ge~L~~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll 143 (211)
.-+|++ |.++|+.+-..|-..+..+-+-|+.+-
T Consensus 50 PLnid~-se~~L~e~ckELh~~I~~LEeEKYDlE 82 (182)
T 1ytz_I 50 PLSLPG-SMQELQELSKKLHAKIDSVDEERYDTE 82 (182)
T ss_dssp CCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 347899 999999999999999999999887663
No 54
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=37.93 E-value=34 Score=26.47 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 144 ARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 144 ~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
..+|..|+.+...|++||.+|.++-
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457788889999999999998764
No 55
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=37.19 E-value=1.6e+02 Score=26.02 Aligned_cols=43 Identities=16% Similarity=-0.024 Sum_probs=21.7
Q ss_pred cHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhh
Q 028296 27 GLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKT 74 (211)
Q Consensus 27 GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~ 74 (211)
|+-||.-|.. -||.-|.+ +++..=.||+..=.+.+.|.+|+..
T Consensus 55 ~~~~~~~~~~--~~a~~c~~---~~~~~G~~CPTtC~l~D~L~k~q~~ 97 (464)
T 1m1j_B 55 QAMKKGPIIY--PDAGGCKH---PLDELGVLCPTGCELQTTLLKQEKT 97 (464)
T ss_dssp --------CC--CCCSCEEC---SSTTTCEEEECTTHHHHHHHHHHHH
T ss_pred hhhccCcccC--CCCCCccc---cCCCccCcCCCccHHHHHHHHhhhh
Confidence 5567777776 77777765 4445556664322667777777664
No 56
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.86 E-value=99 Score=20.80 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 134 IIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 134 ~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.+..++..+ ...|+.|.++...++.+...|...+
T Consensus 69 ~L~~~~e~i-~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 69 ELQEKLETL-QLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333 5678888888888888888887777
No 57
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=34.15 E-value=1.4 Score=31.15 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=31.9
Q ss_pred eCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccc
Q 028296 11 IENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEY 57 (211)
Q Consensus 11 I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~ 57 (211)
|.++.-...||-=.-.-|.++.-+||.+| ++.|+|.|+-|..
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l 62 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL 62 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe
Confidence 34455556667667777888888899777 9999999987765
No 58
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=34.03 E-value=66 Score=18.23 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 144 ARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 144 ~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.+.....-.|++.|+.+|..|..++
T Consensus 12 NdrlAsyidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 12 NDRFANYIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455578899999999998877
No 59
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=33.64 E-value=30 Score=22.74 Aligned_cols=26 Identities=8% Similarity=0.041 Sum_probs=20.4
Q ss_pred EEEEecCCCccccccCCcchhHHHHHH
Q 028296 44 SILICSSTAKAHEYISPSTTTKQLLDL 70 (211)
Q Consensus 44 a~Iifs~~gkl~~~~sp~~~~~~ii~R 70 (211)
-+.||.|+|...+++..+ ++.++...
T Consensus 7 ~i~v~tP~G~~~~lp~Ga-T~~D~A~~ 32 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGS-TVIDFAYA 32 (78)
T ss_dssp EEEEECTTSCEEEEETTC-BHHHHHHH
T ss_pred eEEEECCCCCEEEecCCC-CHHHHHHH
Confidence 378999999999999886 56666543
No 60
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=33.57 E-value=2.4e+02 Score=24.49 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=36.7
Q ss_pred CCccccccCCcchhHHHHHHHhhhhccccchhhhHHhHhhHHHHHHHHHHHHHHHHhhcCC
Q 028296 51 TAKAHEYISPSTTTKQLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGE 111 (211)
Q Consensus 51 ~gkl~~~~sp~~~~~~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~~ir~~~Ge 111 (211)
+.++=.||+..=.+.+.|.+|+..-..++ ..++.+..++..+......|.+.+...+.+
T Consensus 12 ~~~~G~~CPT~C~i~d~L~k~e~~V~~~l--~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~ 70 (409)
T 1m1j_C 12 DERFGSYCPTTCGIADFFNKYRLTTDGEL--LEIEGLLQQATNSTGSIEYLIQHIKTIYPS 70 (409)
T ss_dssp CGGGCCEEECTTHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred CcccCCcCCCcccHHHHHHHHHhcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33444555432289999999998543322 334555567777777777777777666544
No 61
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=32.94 E-value=71 Score=18.28 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=14.1
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 028296 114 NDLTLEELTGLEQDILDG 131 (211)
Q Consensus 114 ~~Ls~~EL~~LE~~Le~~ 131 (211)
++.|++||-.||..|..-
T Consensus 15 egfspeelaaleselqal 32 (48)
T 1g6u_A 15 EGFSPEELAALESELQAL 32 (48)
T ss_dssp TTCSHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 389999999999766543
No 62
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=31.75 E-value=86 Score=18.83 Aligned_cols=33 Identities=18% Similarity=0.440 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 028296 118 LEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGV 157 (211)
Q Consensus 118 ~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l 157 (211)
+++|..||. ..-.-|+++..+.+..++++...+
T Consensus 12 ld~l~~LEk-------qF~~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 12 VSEMLDLEK-------QFSELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556653 334456777778777777776554
No 63
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=31.34 E-value=48 Score=18.27 Aligned_cols=21 Identities=5% Similarity=0.235 Sum_probs=10.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q 028296 148 NTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 148 ~~l~kk~~~l~een~~L~~~~ 168 (211)
++|..|+..|..+|..|...+
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV 24 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHH
Confidence 344445555555555554443
No 64
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=30.98 E-value=2e+02 Score=22.83 Aligned_cols=44 Identities=7% Similarity=-0.024 Sum_probs=24.2
Q ss_pred HHHHHHhhhhccccchhhhHHhHhhHHHHHHHHHHHHHHHHhhc
Q 028296 66 QLLDLYQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRM 109 (211)
Q Consensus 66 ~ii~RY~~~~~~~~~~~~~e~lq~el~kLk~~~~~L~~~ir~~~ 109 (211)
.-+++|......-..+..+..++.+++.++..+..++.++..++
T Consensus 74 ~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~ 117 (256)
T 3na7_A 74 AKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQ 117 (256)
T ss_dssp HHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544322222335566777777777777776666654443
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.99 E-value=2.9e+02 Score=24.34 Aligned_cols=28 Identities=14% Similarity=0.298 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 028296 139 KDQVLARQINTFKRKVRGVQKENKSLQD 166 (211)
Q Consensus 139 K~~ll~~qi~~l~kk~~~l~een~~L~~ 166 (211)
+.+...++++..+++...++++...+.+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~ 551 (597)
T 3oja_B 524 ETQARRTEADAKQKETEDLEQENIALEK 551 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcchhhHHhhhHHHHH
Confidence 3444444444444444444444444444
No 66
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=29.87 E-value=73 Score=17.42 Aligned_cols=20 Identities=5% Similarity=0.147 Sum_probs=9.7
Q ss_pred HHHHhhhhHHHHHHHHHHHH
Q 028296 149 TFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 149 ~l~kk~~~l~een~~L~~~~ 168 (211)
+|..|+..|..+|..|..++
T Consensus 4 QLEdKvEeLl~~~~~Le~EV 23 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXL 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 44445555555555554443
No 67
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=28.89 E-value=1.4e+02 Score=20.36 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 130 DGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 130 ~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.++..+..++..+ ...|+.|.++...++.+...|...+
T Consensus 70 ea~~~L~~~~e~i-e~~i~~le~~~~~l~~~l~~lk~~l 107 (117)
T 2zqm_A 70 KAVAELKEKIETL-EVRLNALERQEKKLNEKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555444 6678888888888888888888888
No 68
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=28.67 E-value=62 Score=18.06 Aligned_cols=19 Identities=16% Similarity=0.239 Sum_probs=11.9
Q ss_pred hHHhHhhHHHHHHHHHHHH
Q 028296 84 YEKMLENLGAVEQVNRILK 102 (211)
Q Consensus 84 ~e~lq~el~kLk~~~~~L~ 102 (211)
++.-++++..|+++|..|.
T Consensus 16 ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 16 IEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 4445566777777776654
No 69
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.32 E-value=1.6e+02 Score=20.95 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 139 KDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 139 K~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
+.+-+..+|.+|..+......+-.+|++..
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456667888889888888888888888876
No 70
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=27.59 E-value=66 Score=24.89 Aligned_cols=34 Identities=26% Similarity=0.219 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 134 IIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 134 ~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.+++ -...+++.+..|+.++..|+++|.+|+.+.
T Consensus 142 ~i~e-lid~~ld~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 142 VIRE-LICYCLDTIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 333446678888999999999999998876
No 71
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=26.98 E-value=64 Score=17.75 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=10.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q 028296 148 NTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 148 ~~l~kk~~~l~een~~L~~~~ 168 (211)
++|..|+..|..+|..|...+
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV 24 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAV 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHH
Confidence 344555555555555554443
No 72
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=26.78 E-value=84 Score=25.04 Aligned_cols=35 Identities=9% Similarity=0.042 Sum_probs=23.6
Q ss_pred CCCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 028296 111 ESLNDLTLEELTGLEQ--DILDGLKIIHECKDQVLAR 145 (211)
Q Consensus 111 e~L~~Ls~~EL~~LE~--~Le~~L~~Ir~RK~~ll~~ 145 (211)
..++.++++||..++. .=+.-|..+|.++.+-|..
T Consensus 67 ~~~~~~~~~e~~~~~~d~eDe~fL~~~r~~Rl~el~~ 103 (245)
T 1a0r_P 67 RFSRKMSVQEYELIHKDKEDENCLRKYRRQCMQDMHQ 103 (245)
T ss_dssp -CCCCSCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhccCChhhhhhcccccccHHHHHHHHHHHHHHHHH
Confidence 3456789999988872 2345678888887665554
No 73
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=26.53 E-value=46 Score=18.56 Aligned_cols=15 Identities=20% Similarity=0.299 Sum_probs=5.8
Q ss_pred HHHhhhhHHHHHHHH
Q 028296 150 FKRKVRGVQKENKSL 164 (211)
Q Consensus 150 l~kk~~~l~een~~L 164 (211)
|..|+..|..++..|
T Consensus 6 LE~kVEeLl~~~~~L 20 (36)
T 1kd8_A 6 LEAEVEEIESEVWHL 20 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHH
Confidence 333333333333333
No 74
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.01 E-value=1.1e+02 Score=19.86 Aligned_cols=25 Identities=16% Similarity=0.368 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 144 ARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 144 ~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.+++..|+.....|..+|..|..++
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777777788887777
No 75
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=25.72 E-value=2.1e+02 Score=21.38 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 028296 117 TLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQ 165 (211)
Q Consensus 117 s~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~ 165 (211)
|+.|...|+..-...+.+|+.++.+| . ++..-+.--+.|-+.|..+.
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~L-q-eL~~Q~vafknLv~RN~~~e 49 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQL-Q-ELILQQIAFKNLVQRNRHAE 49 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHH
Confidence 67788888888778888888766544 2 12222222355666666554
No 76
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=25.18 E-value=87 Score=18.90 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=10.5
Q ss_pred HHHhhhhHHHHHHHHHHHH
Q 028296 150 FKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 150 l~kk~~~l~een~~L~~~~ 168 (211)
|-+++..|..||..|++.+
T Consensus 8 L~~QVe~Lk~ENshLrrEL 26 (54)
T 1deb_A 8 LLKQVEALKMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHH
Confidence 3344555556666666655
No 77
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=23.91 E-value=1.6e+02 Score=23.21 Aligned_cols=47 Identities=9% Similarity=0.116 Sum_probs=19.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKEN 161 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een 161 (211)
++|++|...+-..-...+..+-..+.+.+.++|..|++....|+...
T Consensus 63 g~~l~~i~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (278)
T 1r8e_A 63 GTPLEEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVK 109 (278)
T ss_dssp TCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777666654321111222222233333444555544444444433
No 78
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=23.84 E-value=79 Score=17.40 Aligned_cols=21 Identities=5% Similarity=0.123 Sum_probs=10.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q 028296 148 NTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 148 ~~l~kk~~~l~een~~L~~~~ 168 (211)
.+|..|+..|..+|..|...+
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV 24 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENEL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555554444
No 79
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=23.82 E-value=61 Score=24.58 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=18.6
Q ss_pred hhhcCCeEEEEEecCCCcccc-cc
Q 028296 36 TILCDAKVSILICSSTAKAHE-YI 58 (211)
Q Consensus 36 SvLCdaeva~Iifs~~gkl~~-~~ 58 (211)
+.-|++.|-+++|||+-+.|- |.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfI 139 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLI 139 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEE
T ss_pred CCCcceEEEEEEEcCCcceeeeec
Confidence 456999999999999877775 44
No 80
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=23.79 E-value=1.6e+02 Score=19.30 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=15.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHH
Q 028296 147 INTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 147 i~~l~kk~~~l~een~~L~~~~ 168 (211)
...++.+...|+.+|..|+.++
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v 59 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKV 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777778888777777
No 81
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=23.26 E-value=1.2e+02 Score=23.62 Aligned_cols=40 Identities=13% Similarity=0.296 Sum_probs=24.7
Q ss_pred hhhHHhHhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHH
Q 028296 82 SHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEEL 121 (211)
Q Consensus 82 ~~~e~lq~el~kLk~~~~~L~~~ir~~~Ge~L~~Ls~~EL 121 (211)
+.+..++...+++..++..|+..+..+.|..-+.++++-+
T Consensus 44 s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~ 83 (206)
T 3oa7_A 44 SEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIKNI 83 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHHHH
Confidence 4455566666777778888887777666654444443333
No 82
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=23.14 E-value=2e+02 Score=20.43 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 115 DLTLEELTGLEQDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 115 ~Ls~~EL~~LE~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
++|++|...+-...+..-... ..-..++.+++..+.++...|+.....|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T 1q06_A 57 GFNLEESGELVNLFNDPQRHS-ADVKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_dssp TCCHHHHHHHHHHHHCTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888887665433211111 11234667777777777777777666666555
No 83
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=23.09 E-value=88 Score=20.86 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=26.7
Q ss_pred EEEEEec-CCCccccccCCcchhHHHHHHHhhhhc
Q 028296 43 VSILICS-STAKAHEYISPSTTTKQLLDLYQKTLR 76 (211)
Q Consensus 43 va~Iifs-~~gkl~~~~sp~~~~~~ii~RY~~~~~ 76 (211)
+.++.-| .++.++.+..|.+.+.+++..|....+
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~ 44 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVK 44 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHT
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcC
Confidence 3445544 478999999999999999999987654
No 84
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=22.11 E-value=1.8e+02 Score=20.94 Aligned_cols=20 Identities=25% Similarity=0.121 Sum_probs=12.2
Q ss_pred CCCCCCCCHHHHHHHHHHHH
Q 028296 110 GESLNDLTLEELTGLEQDIL 129 (211)
Q Consensus 110 Ge~L~~Ls~~EL~~LE~~Le 129 (211)
..||+.|+-+|...+.+-|.
T Consensus 4 ~~dls~LteeE~~~Il~Vl~ 23 (134)
T 1zbd_B 4 MRKQEELTDEEKEIINRVIA 23 (134)
T ss_dssp ----CCCCSSHHHHHHHHHH
T ss_pred CCCcccCCHHHHHHHHHHHh
Confidence 35788999999877766443
No 85
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=21.83 E-value=1.8e+02 Score=19.84 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCCCCc
Q 028296 142 VLARQINTFKRKVRGVQKENKSLQDGFIINAKEEDPHYE 180 (211)
Q Consensus 142 ll~~qi~~l~kk~~~l~een~~L~~~~~~~~~~~~~~~~ 180 (211)
.|...|..|++.+......-.-|.+-. ..=..+|+||
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~--~vY~~nP~~G 55 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMK--DVYEKTPQMG 55 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHH--HHHHHCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCccC
Confidence 334444444444443333333333222 2224456665
No 86
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=21.66 E-value=1.7e+02 Score=18.82 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=9.1
Q ss_pred HHHHHHHHHhhhhHHHHHH
Q 028296 144 ARQINTFKRKVRGVQKENK 162 (211)
Q Consensus 144 ~~qi~~l~kk~~~l~een~ 162 (211)
.+++.+|+.-.+.|+++..
T Consensus 45 ~DEV~tLe~NLrEL~~ei~ 63 (69)
T 1z0k_B 45 MDEVRTLQENLRQLQDEYD 63 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544443
No 87
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=21.65 E-value=1.4e+02 Score=19.89 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 028296 126 QDILDGLKIIHECKDQVLARQINTFKRKVRGVQKENKSLQ 165 (211)
Q Consensus 126 ~~Le~~L~~Ir~RK~~ll~~qi~~l~kk~~~l~een~~L~ 165 (211)
..++.-+..+|.--+..-+.. ..|..|+..|.+|...|+
T Consensus 45 ~~~E~d~~~LrkdvD~a~l~r-~dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 45 EEAENTLQSFRQDVDNASLAR-LDLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 344444444544444444432 346666777777766654
No 88
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=21.23 E-value=1.9e+02 Score=19.32 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 144 ARQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 144 ~~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
..+...|+.++..|..|...|+.-+
T Consensus 49 e~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 49 TAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555554444444
No 89
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=21.09 E-value=2.6e+02 Score=20.79 Aligned_cols=47 Identities=17% Similarity=0.209 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHH
Q 028296 122 TGLEQDILDGLKIIHECKDQVLA--RQINTFKRKVRGVQKENKSLQDGF 168 (211)
Q Consensus 122 ~~LE~~Le~~L~~Ir~RK~~ll~--~qi~~l~kk~~~l~een~~L~~~~ 168 (211)
.+|+..|...-+.+-.-++.++. -|...+..|.+.|++||..|..+.
T Consensus 85 ~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 85 RRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433 345668889999999998886654
No 90
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.97 E-value=3.9e+02 Score=24.07 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=29.0
Q ss_pred HHhHhhHHHHHHHHHHHHHHH----HhhcCCCC----CCCCHHHHHHHHHHHHHHH
Q 028296 85 EKMLENLGAVEQVNRILKKQI----RQRMGESL----NDLTLEELTGLEQDILDGL 132 (211)
Q Consensus 85 e~lq~el~kLk~~~~~L~~~i----r~~~Ge~L----~~Ls~~EL~~LE~~Le~~L 132 (211)
..||..|+.+..++.+|+..| |.-.|.|- ..++++....++++|+...
T Consensus 134 rvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHh
Confidence 344455555555555555443 44456553 3568888888888888754
No 91
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=20.50 E-value=1.1e+02 Score=18.28 Aligned_cols=18 Identities=22% Similarity=0.663 Sum_probs=10.6
Q ss_pred HHHHHHHHHhhhhHHHHH
Q 028296 144 ARQINTFKRKVRGVQKEN 161 (211)
Q Consensus 144 ~~qi~~l~kk~~~l~een 161 (211)
...+...+++++.|+++|
T Consensus 20 er~lrk~kk~iKklEdeN 37 (50)
T 1a92_A 20 ERDLRKLKKKIKKLEEDN 37 (50)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhccC
Confidence 444555566666666665
No 92
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=20.34 E-value=1.8e+02 Score=23.42 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=11.5
Q ss_pred eeeCCCcchhhHHhhhhccHHHHHHHHhhhcCCeEEEEEecCCCccccccCCcchhHHHHHHHhhhh
Q 028296 9 KRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYISPSTTTKQLLDLYQKTL 75 (211)
Q Consensus 9 ~~I~n~~~R~vTf~KRr~GL~KKA~ELSvLCdaeva~Iifs~~gkl~~~~sp~~~~~~ii~RY~~~~ 75 (211)
-.|++...=++|+.||-.||..|..+|+.--+-+=++=.|-=+.++|..++ .+-++|.+.-
T Consensus 117 ~~iev~~~~~itmrkri~~Itqrlg~ltL~~~~~~eIdLFewA~~L~q~i~------~ln~k~~~~E 177 (246)
T 1z56_A 117 CRMQDDEVWKVVMELESSAIIRKIAELTLHPVKKGEIDLFEMADKLYKDIC------CVNDSYRNIK 177 (246)
T ss_dssp ------------------------------------------CTTSGGGTT------HHHHHHHHTT
T ss_pred cCceeCCEEEEEEeehhhHHHhhheeEEeecCccchhhHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 445555566899999999999999999876655555555555556665443 5667887654
No 93
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=20.08 E-value=1.5e+02 Score=17.64 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 028296 135 IHECKDQVLARQINTFKRKVRGVQKENK 162 (211)
Q Consensus 135 Ir~RK~~ll~~qi~~l~kk~~~l~een~ 162 (211)
|+.-|..--.+++..|.+-.+.|+.|..
T Consensus 17 I~qAk~~rRfdEV~~L~~NL~EL~~E~~ 44 (48)
T 3v1a_A 17 IHQAKAAGRMDEVRTLQENLHQLMHEYF 44 (48)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3333444445677777777777776654
Done!