BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028297
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DY0|A Chain A, Crystal Structure Of Project Jw0458 From Escherichia Coli
pdb|2DY0|B Chain B, Crystal Structure Of Project Jw0458 From Escherichia Coli
Length = 190
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/150 (52%), Positives = 114/150 (76%), Gaps = 2/150 (1%)
Query: 48 QIWWAAGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAI 107
Q + GI+F+D+T+LL D KA+ ++D+ V+RY++ GI+ V G EARGF+FG +AL +
Sbjct: 26 QDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGL 85
Query: 108 GAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAA 167
G FVP+RKP KLP E ISE Y LEYGTD+LE+HV AI+PG++ LV+DDL+ATGGT+ A
Sbjct: 86 GVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEAT 145
Query: 168 VRLLERMGAEVVECACVVGLPE--GQRRLD 195
V+L+ R+G EV + A ++ L + G++RL+
Sbjct: 146 VKLIRRLGGEVADAAFIINLFDLGGEQRLE 175
>pdb|1ORE|A Chain A, Human Adenine Phosphoribosyltransferase
pdb|1ZN7|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN7|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Prpp, Ade And R5p
pdb|1ZN8|A Chain A, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN8|B Chain B, Human Adenine Phosphoribosyltransferase Complexed With
Amp, In Space Group P1 At 1.76 A Resolution
pdb|1ZN9|A Chain A, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
pdb|1ZN9|B Chain B, Human Adenine Phosphoribosyltransferase In Apo And Amp
Complexed Forms
Length = 180
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 100/156 (64%), Gaps = 5/156 (3%)
Query: 54 GIMFQDITTLLLDHKAFKDTVDIFVDRYRDMG---ISVVAGIEARGFVFGPSIALAIGAK 110
G++F+DI+ +L D +F+ + + + I +AG+++RGF+FGPS+A +G
Sbjct: 23 GVVFRDISPVLKDPASFRAAIGLLARHLKATHGGRIDYIAGLDSRGFLFGPSLAQELGLG 82
Query: 111 FVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRL 170
V +RK KLPG + +Y LEYG LE+ A+EPG+R +V+DDL+ATGGT++AA L
Sbjct: 83 CVLIRKRGKLPGPTLWASYSLEYGKAELEIQKDALEPGQRVVVVDDLLATGGTMNAACEL 142
Query: 171 LERMGAEVVECACVVGLP--EGQRRLDGKPLYILVE 204
L R+ AEV+EC +V L +G+ +L P + L++
Sbjct: 143 LGRLQAEVLECVSLVELTSLKGREKLAPVPFFSLLQ 178
>pdb|1G2Q|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2Q|B Chain B, Crystal Structure Of Adenine Phosphoribosyltransferase
pdb|1G2P|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
Length = 187
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 99/160 (61%), Gaps = 7/160 (4%)
Query: 50 WWAAGIMFQDITTLLLDHKAFKDTVDIFV----DRYRDMGISVVAGIEARGFVFGPSIAL 105
+ + GI+F+D + + F+ +D F + + ++ I + G+E+RGF+FGP++AL
Sbjct: 20 FPSEGILFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGPTLAL 79
Query: 106 AIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLS 165
A+G FVP+RK KLPGE Y EYG+D E+ AI G +++DD++ATGG+ +
Sbjct: 80 ALGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDIIATGGSAA 139
Query: 166 AAVRLLERMGAEVVECACVVGLP--EGQRRLDGKPLYILV 203
AA L+E++ A ++E V+ L +G+ +L+ P++ L+
Sbjct: 140 AAGELVEQLEANLLEYNFVMELDFLKGRSKLNA-PVFTLL 178
>pdb|1MZV|A Chain A, Crystal Structure Of Adenine Phosphoribosyltransferase
(Aprt) From Leishmania Tarentolae
Length = 235
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 82/138 (59%), Gaps = 6/138 (4%)
Query: 57 FQDITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPL 114
F D++++ + K D V+RYR M + + G +ARGF+FGP IA+ +G FV +
Sbjct: 42 FADVSSITESPETLKAIRDFLVERYRTMSPAPTHILGFDARGFLFGPMIAVELGIPFVLM 101
Query: 115 RKPNKLPGEVI-SEAYVLEY---GTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRL 170
RK +K G +I SE Y EY + + + G+I R ++IDD++ATGGT + ++L
Sbjct: 102 RKADKNAGLLIRSEPYEKEYKEAAPEVMTIRHGSIGKNSRVVLIDDVLATGGTALSGLQL 161
Query: 171 LERMGAEVVECACVVGLP 188
+E GAEVVE ++ +P
Sbjct: 162 VEASGAEVVEMVSILTIP 179
>pdb|1L1Q|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine
pdb|1L1R|A Chain A, Crystal Structure Of Aprtase From Giardia Lamblia
Complexed With 9- Deazaadenine, Mg2+ And Prpp
Length = 186
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/129 (36%), Positives = 72/129 (55%), Gaps = 1/129 (0%)
Query: 50 WWAAGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGA 109
+ GI F+D++ +L A Y+D+ I+ V GIE+RGF+ G +A ++G
Sbjct: 18 FPTKGIAFKDLSDILSTPAALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIVANSLGV 77
Query: 110 KFVPLRKPNKLPGEVISEAYVLEYGTD-RLEMHVGAIEPGERALVIDDLVATGGTLSAAV 168
FV LRK KLPG+V + +EY +E+ + P + L+ DD++ATGGTL AA+
Sbjct: 78 GFVALRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGGTLLAAI 137
Query: 169 RLLERMGAE 177
L E G +
Sbjct: 138 ELCETAGVK 146
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 79/138 (57%), Gaps = 6/138 (4%)
Query: 57 FQDITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPL 114
F D++++ + K D V RYR M + + G +ARGF+FGP IA+ + FV +
Sbjct: 41 FADVSSITESPETLKAIRDFLVQRYRAMSPAPTHILGFDARGFLFGPMIAVELEIPFVLM 100
Query: 115 RKPNKLPGEVI-SEAYVLEY---GTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRL 170
RK +K G +I SE Y EY + + + G+I G R ++IDD++ATGGT + ++L
Sbjct: 101 RKADKNAGLLIRSEPYEKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLATGGTALSGLQL 160
Query: 171 LERMGAEVVECACVVGLP 188
+E A VVE ++ +P
Sbjct: 161 VEASDAVVVEMVSILSIP 178
>pdb|1O57|A Chain A, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|B Chain B, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|C Chain C, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
pdb|1O57|D Chain D, Crystal Structure Of The Purine Operon Repressor Of
Bacillus Subtilis
Length = 291
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 76 IFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP-GEVISEAYVLEYG 134
+F + + I VV + +G + A + V +RK NK+ G +S YV
Sbjct: 121 LFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYV-SGS 179
Query: 135 TDRLE---MHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 185
++R++ + +++ G L+IDD + GGT++ + LL+ A V +V
Sbjct: 180 SNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLV 233
>pdb|1P4A|A Chain A, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|B Chain B, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|C Chain C, Crystal Structure Of The Purr Complexed With Cprpp
pdb|1P4A|D Chain D, Crystal Structure Of The Purr Complexed With Cprpp
Length = 285
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 76 IFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP-GEVISEAYVLEYG 134
+F + + I VV + +G + A + V +RK NK+ G +S YV
Sbjct: 121 LFASVFAEREIDVVMTVATKGIPLAYAAASYLNVPVVIVRKDNKVTEGSTVSINYV-SGS 179
Query: 135 TDRLE---MHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 185
++R++ + +++ G L+IDD + GGT++ + LL+ A V +V
Sbjct: 180 SNRIQTMSLAKRSMKTGSNVLIIDDFMKAGGTINGMINLLDEFNANVAGIGVLV 233
>pdb|1U9Y|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Y|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
From Methanocaldococcus Jannaschii
pdb|1U9Z|A Chain A, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|B Chain B, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|C Chain C, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
pdb|1U9Z|D Chain D, Crystal Structure Of Phosphoribosyl Diphosphate Synthase
Complexed With Amp And Ribose 5-Phosphate
Length = 284
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 26/33 (78%)
Query: 152 LVIDDLVATGGTLSAAVRLLERMGAEVVECACV 184
++DD+++TGGT++ AV+LL+ GA+ + ACV
Sbjct: 209 FIVDDIISTGGTMATAVKLLKEQGAKKIIAACV 241
>pdb|2WNS|A Chain A, Human Orotate Phosphoribosyltransferase (Oprtase) Domain
Of Uridine 5'-Monophosphate Synthase (Umps) In Complex
With Its Substrate Orotidine 5'-Monophosphate (Omp)
pdb|2WNS|B Chain B, Human Orotate Phosphoribosyltransferase (Oprtase) Domain
Of Uridine 5'-Monophosphate Synthase (Umps) In Complex
With Its Substrate Orotidine 5'-Monophosphate (Omp)
Length = 205
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 118 NKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAE 177
N++P +I +YGT RL G I PGE L+I+D+V +G ++ V +L++ G +
Sbjct: 84 NQIP-MLIRRKETKDYGTKRLVE--GTINPGETCLIIEDVVTSGSSVLETVEVLQKEGLK 140
Query: 178 VVECACVVGLPEG 190
V + ++ +G
Sbjct: 141 VTDAIVLLDREQG 153
>pdb|3LPN|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LPN|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With An Atp Analog (Ampcpp).
pdb|3LRT|A Chain A, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3LRT|B Chain B, Crystal Structure Of The Phosphoribosyl Pyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp.
pdb|3NAG|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
pdb|3NAG|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp
Length = 286
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 138 LEMHVGAIE-PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 187
+EM V ++ G++ L++DD+++TGGT++ + LL GA + + V GL
Sbjct: 192 VEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGL 242
>pdb|3MBI|A Chain A, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|B Chain B, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|C Chain C, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
pdb|3MBI|D Chain D, Crystal Structure Of The Phosphoribosylpyrophosphate
(Prpp) Synthetase From Thermoplasma Volcanium In Complex
With Adp-Mg2+ And Ribose 5- Phosphate
Length = 287
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 138 LEMHVGAIE-PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 187
+EM V ++ G++ L++DD+++TGGT++ + LL GA + + V GL
Sbjct: 194 VEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREKGASKIYVSAVHGL 244
>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
Length = 209
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 31/44 (70%)
Query: 152 LVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLD 195
+++D ++ATGG+ AA+ L++ GA+ ++ C++ PEG + ++
Sbjct: 128 IIVDPMLATGGSAVAAIDALKKRGAKSIKFMCLIAAPEGVKAVE 171
>pdb|1V9S|A Chain A, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|B Chain B, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|C Chain C, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|D Chain D, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
Length = 208
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 150 RALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRL 194
RA ++D +ATGG+ S A+ LL+ GA V+ ++ PEG R+
Sbjct: 125 RAFLLDPXLATGGSASLALSLLKERGATGVKLXAILAAPEGLERI 169
>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|B Chain B, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|C Chain C, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|D Chain D, Structure Of Uracil Phosphoribosyl Transferase
Length = 208
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 151 ALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEG 190
AL++D ++ATGG++ A + LL++ G ++ +V PEG
Sbjct: 126 ALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLVAAPEG 165
>pdb|2E55|A Chain A, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|B Chain B, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|C Chain C, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|D Chain D, Structure Of Aq2163 Protein From Aquifex Aeolicus
Length = 208
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 148 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGK 197
G+ +++D ++ATGGTL A+R + + V+ + PEG +R++ K
Sbjct: 121 GKIVVILDPMLATGGTLEVALREILKHSPLKVKSVHAIAAPEGLKRIEEK 170
>pdb|3QW4|B Chain B, Structure Of Leishmania Donovani Ump Synthase
pdb|3QW4|C Chain C, Structure Of Leishmania Donovani Ump Synthase
Length = 453
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 143 GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGK 197
G + G+R ++IDDLV+TG T A+ L G EVV +V G + K
Sbjct: 360 GEYKKGDRVVIIDDLVSTGETKVEAIEKLRSAGLEVVSIVVLVDRDMGAKAFLNK 414
>pdb|3DEZ|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
pdb|3DEZ|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Mutans
Length = 243
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 28/42 (66%)
Query: 143 GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 184
G + G++ ++I+DL++TGG++ AV +R GA+V+ +
Sbjct: 144 GRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGADVLGVVAI 185
>pdb|1DKR|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKR|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|A Chain A, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1DKU|B Chain B, Crystal Structures Of Bacillus Subtilis
Phosphoribosylpyrophosphate Synthetase: Molecular Basis
Of Allosteric Inhibition And Activation.
pdb|1IBS|A Chain A, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
pdb|1IBS|B Chain B, Phosphoribosyldiphosphate Synthetase In Complex With
Cadmium Ions
Length = 317
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 142 VGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 183
VG IE G+ A++IDD++ T GT++ A L GA+ V C
Sbjct: 212 VGNIE-GKTAILIDDIIDTAGTITLAANALVENGAKEVYACC 252
>pdb|1VDM|A Chain A, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|B Chain B, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|C Chain C, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|D Chain D, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|E Chain E, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|F Chain F, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|G Chain G, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|H Chain H, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|I Chain I, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|J Chain J, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|K Chain K, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
pdb|1VDM|L Chain L, Crystal Structure Of Purine Phosphoribosyltransferase From
Pyrococcus Horikoshii Ot3
Length = 153
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 149 ERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLP 188
+R +++DD+ TG TL + ++++GA+ ++ AC+ P
Sbjct: 84 KRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKP 123
>pdb|1Y0B|A Chain A, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|B Chain B, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|C Chain C, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis.
pdb|1Y0B|D Chain D, Crystal Structure Of Xanthine Phosphoribosyltransferase
From Bacillus Subtilis
Length = 197
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 75 DIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP-GEVISEAYVLEY 133
D F R+ GI+ + IE+ G L +G V RK L + + A V +
Sbjct: 43 DEFASRFAKDGITKIVTIESSGIAPAVXTGLKLGVPVVFARKHKSLTLTDNLLTASVYSF 102
Query: 134 GTDRLEMHVGA----IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 185
T + E + + + L+IDD +A G V ++++ GA + V+
Sbjct: 103 -TKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVI 157
>pdb|3M3H|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor'
pdb|3OSC|A Chain A, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|B Chain B, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
pdb|3OSC|C Chain C, 2.65 Angstrom Resolution Crystal Structure Of An Orotate
Phosphoribosyltransferase From Bacillus Anthracis Str.
'ames Ancestor' In Complex With
5-Phospho-Alpha-D-Ribosyl Diphosphate (Prpp)
Length = 234
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 143 GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVV 179
G E G++ +V++DL++TGG+ V L G EV+
Sbjct: 132 GKAEKGQKVVVVEDLISTGGSAITCVEALREAGCEVL 168
>pdb|2FXV|A Chain A, Bacillus Subtilis Xanthine Phosphoribosyltransferase In
Complex With Guanosine 5'-monophosphate (gmp)
pdb|2FXV|B Chain B, Bacillus Subtilis Xanthine Phosphoribosyltransferase In
Complex With Guanosine 5'-monophosphate (gmp)
Length = 194
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 75 DIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP-GEVISEAYVLEY 133
D F R+ GI+ + IE+ G L +G V RK L + + A V +
Sbjct: 40 DEFASRFAKDGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLTASVYSF 99
Query: 134 GTDRLEMHVGA----IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 185
T + E + + + L+IDD +A G V ++++ GA + V+
Sbjct: 100 -TKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVI 154
>pdb|2P1Z|A Chain A, Crystal Structure Of Phosphoribosyltransferase From
Corynebacterium Diphtheriae
pdb|2P1Z|B Chain B, Crystal Structure Of Phosphoribosyltransferase From
Corynebacterium Diphtheriae
Length = 180
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 148 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEG 190
G++ LV++D TG + AV+ L GAEVV A VV G
Sbjct: 114 GKKVLVVEDTTTTGNSPLTAVKALREAGAEVVGVATVVDRATG 156
>pdb|2AEE|A Chain A, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
pdb|2AEE|B Chain B, Crystal Structure Of Orotate Phosphoribosyltransferase
From Streptococcus Pyogenes
Length = 211
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 23/152 (15%)
Query: 51 WAAGI---MFQDITTLLLDHKAFKDTVDI-FVDRYRDM--GISVVAGIEARGFVFGPSIA 104
WA+GI ++ D + L + +D ++ FV+ + + V+AG G G IA
Sbjct: 29 WASGIKSPIYTD-NRVTLSYPKTRDLIENGFVETIKAHFPEVEVIAGTATAGIPHGAIIA 87
Query: 105 LAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTL 164
+ F +R K G +++E G + G++ ++I+DL++TGG++
Sbjct: 88 DKMTLPFAYIRSKPKDHG-----------AGNQIE---GRVLKGQKMVIIEDLISTGGSV 133
Query: 165 SAAVRLLERMGAEVVECACVVG--LPEGQRRL 194
A R GA+V+ + LP+ +
Sbjct: 134 LDAAAAASREGADVLGVVAIFTYELPKASQNF 165
>pdb|4HPP|A Chain A, Crystal Structure Of Novel Glutamine Synthase Homolog
Length = 443
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 18/77 (23%)
Query: 78 VDRYRDMGISVVAGIEARGFVFG-----PSIALAIGAKFVPLRKPNKLPGEVIS------ 126
V+RYRD G+ V+A E + G P+ A ++ A+ R + PG ++S
Sbjct: 116 VERYRDSGLQVIAAFEHEFSLLGLPGERPAAAFSLQAQ----RAAGQFPGWLVSALAQAG 171
Query: 127 ---EAYVLEYGTDRLEM 140
E ++ EYG + E+
Sbjct: 172 TEPEMFLPEYGQRQYEV 188
>pdb|2VFA|A Chain A, Crystal Structure Of A Chimera Of Plasmodium Falciparum
And Human Hypoxanthine-Guanine Phosphoribosyl
Transferases
pdb|2VFA|B Chain B, Crystal Structure Of A Chimera Of Plasmodium Falciparum
And Human Hypoxanthine-Guanine Phosphoribosyl
Transferases
Length = 229
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 148 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 184
G+ L+++D++ TG T+ + L+ + ++V+ AC+
Sbjct: 135 GKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVACL 171
>pdb|3H83|A Chain A, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3H83|B Chain B, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3H83|C Chain C, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3H83|D Chain D, 2.06 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor'
pdb|3HVU|A Chain A, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3HVU|B Chain B, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3HVU|C Chain C, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3HVU|D Chain D, 1.95 Angstrom Crystal Structure Of Complex Of
Hypoxanthine-Guanine Phosphoribosyltransferase From
Bacillus Anthracis With 2-(N- Morpholino)ethanesulfonic
Acid (Mes)
pdb|3KB8|A Chain A, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
pdb|3KB8|B Chain B, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
pdb|3KB8|C Chain C, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
pdb|3KB8|D Chain D, 2.09 Angstrom Resolution Structure Of A
Hypoxanthine-Guanine Phosphoribosyltransferase (Hpt-1)
From Bacillus Anthracis Str. 'ames Ancestor' In Complex
With Gmp
Length = 204
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 148 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGKPLYI 201
G L+++D++ +G TLS V L + A+ V+ ++ P G R++D K Y+
Sbjct: 116 GRDILIVEDIIDSGLTLSYLVDLFKYRKAKSVKIVTLLDKPTG-RKVDLKADYV 168
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex With
Tubulin Tail
Length = 98
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 143 GAIEPGERALVIDDLVATGGTLSAAVRLL 171
G+I+ GER L I D V GGT + VR L
Sbjct: 1 GSIKKGERELKIGDRVLVGGTKAGVVRFL 29
>pdb|3DAH|A Chain A, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|B Chain B, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
pdb|3DAH|C Chain C, 2.3 A Crystal Structure Of Ribose-Phosphate
Pyrophosphokinase From Burkholderia Pseudomallei
Length = 319
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 142 VGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVV 179
+G +E G +++DD+V T GTL A ++L+ GA+ V
Sbjct: 211 IGEVE-GRTCVIMDDMVDTAGTLCKAAQVLKERGAKQV 247
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 141 HVGAIEPGERALVIDDLVATGGTLSAAVRLL 171
G+I+ GER L I D V GGT + VR L
Sbjct: 28 EAGSIKKGERELKIGDRVLVGGTKAGVVRFL 58
>pdb|1CJB|A Chain A, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|B Chain B, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|C Chain C, Malarial Purine Phosphoribosyltransferase
pdb|1CJB|D Chain D, Malarial Purine Phosphoribosyltransferase
Length = 231
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 148 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 184
G+ L+++D++ TG TL L++ + V AC+
Sbjct: 137 GKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACL 173
>pdb|3OZF|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZF|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With Hypoxanthine
pdb|3OZG|A Chain A, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|B Chain B, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|C Chain C, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
pdb|3OZG|D Chain D, Crystal Structure Of Plasmodium Falciparum
Hypoxanthine-Guanine- Xanthine Phosphoribosyltransferase
In Complex With S-Serme-Immh Phosphonate
Length = 250
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 148 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 184
G+ L+++D++ TG TL L++ + V AC+
Sbjct: 156 GKHVLIVEDIIDTGKTLVKFCEYLKKFEIKTVAIACL 192
>pdb|2JBH|A Chain A, Human Phosphoribosyl Transferase Domain Containing 1
pdb|2JBH|B Chain B, Human Phosphoribosyl Transferase Domain Containing 1
Length = 225
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 148 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDG-KPLYILVE-P 205
G+ L+++D+V TG T+ A + +E+ +++ A + L + R DG +P Y E P
Sbjct: 134 GKNVLIVEDVVGTGRTMKALLSNIEKYKPNMIKVASL--LVKRTSRSDGFRPDYAGFEIP 191
Query: 206 RLSV 209
L V
Sbjct: 192 NLFV 195
>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
Length = 198
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 142 VGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 182
VG + PGER L+ ATGG AAV + + +GA + A
Sbjct: 33 VGRLSPGERVLIHS---ATGGVGMAAVSIAKMIGARIYTTA 70
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 143 GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAE 177
G I+PG+R L +D + G T + A+ +L++ G E
Sbjct: 152 GTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE 186
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate Receptor
Interacting Protein-1 (Grip1)
Length = 97
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 143 GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAE 177
G I+PG+R L +D + G T + A+ +L++ G E
Sbjct: 49 GTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE 83
>pdb|1O5O|A Chain A, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|B Chain B, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|C Chain C, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|D Chain D, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
Length = 221
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 149 ERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGK 197
+ ++D ++ATG + A+ +L+ GA+ + ++ PEG ++ K
Sbjct: 137 KEVFLLDPMLATGVSSIKAIEILKENGAKKITLVALIAAPEGVEAVEKK 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.141 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,484,521
Number of Sequences: 62578
Number of extensions: 203486
Number of successful extensions: 696
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 53
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)