Query 028297
Match_columns 211
No_of_seqs 240 out of 1578
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 09:19:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0462 PrsA Phosphoribosylpyr 100.0 4.9E-38 1.1E-42 267.6 7.1 187 3-207 46-275 (314)
2 KOG1712 Adenine phosphoribosyl 100.0 2E-32 4.3E-37 210.4 16.8 165 42-206 13-182 (183)
3 PLN02293 adenine phosphoribosy 100.0 2.1E-30 4.5E-35 209.2 19.6 163 45-207 22-186 (187)
4 PRK02269 ribose-phosphate pyro 100.0 3.5E-31 7.6E-36 229.8 14.6 189 3-207 47-278 (320)
5 PRK07199 phosphoribosylpyropho 100.0 5.3E-31 1.2E-35 226.9 13.5 186 3-207 44-272 (301)
6 PRK00553 ribose-phosphate pyro 100.0 2.5E-31 5.4E-36 231.5 9.4 187 3-207 51-283 (332)
7 PTZ00145 phosphoribosylpyropho 100.0 4.7E-31 1E-35 234.8 8.9 187 3-207 161-396 (439)
8 PRK04923 ribose-phosphate pyro 100.0 8.5E-31 1.8E-35 227.0 9.2 187 3-207 48-278 (319)
9 PRK03092 ribose-phosphate pyro 100.0 1.1E-30 2.3E-35 225.4 9.0 189 3-207 31-262 (304)
10 PRK02304 adenine phosphoribosy 100.0 1.1E-28 2.4E-33 197.4 18.4 163 45-207 11-175 (175)
11 PRK02458 ribose-phosphate pyro 100.0 1.6E-30 3.4E-35 225.8 8.0 186 3-207 51-279 (323)
12 PRK00934 ribose-phosphate pyro 100.0 2.1E-29 4.6E-34 215.8 11.4 186 3-207 41-265 (285)
13 TIGR01090 apt adenine phosphor 100.0 4.8E-28 1E-32 192.7 18.1 162 44-205 5-169 (169)
14 KOG1448 Ribose-phosphate pyrop 100.0 1.1E-30 2.3E-35 218.9 2.7 180 3-199 45-267 (316)
15 PRK06827 phosphoribosylpyropho 100.0 1.9E-29 4.2E-34 222.5 9.9 195 3-206 72-327 (382)
16 PRK02812 ribose-phosphate pyro 100.0 1.1E-29 2.4E-34 220.9 7.8 187 3-207 63-291 (330)
17 PRK01259 ribose-phosphate pyro 100.0 3.5E-29 7.7E-34 216.4 8.6 186 3-206 42-268 (309)
18 PLN02369 ribose-phosphate pyro 100.0 3E-28 6.5E-33 210.0 12.8 187 3-207 33-263 (302)
19 PLN02297 ribose-phosphate pyro 99.9 3.5E-27 7.5E-32 204.3 12.2 182 3-207 61-297 (326)
20 TIGR01251 ribP_PPkin ribose-ph 99.9 1.1E-27 2.3E-32 207.3 8.8 186 3-206 42-270 (308)
21 PRK13810 orotate phosphoribosy 99.9 5.8E-26 1.3E-30 183.2 15.7 146 50-209 38-186 (187)
22 COG0503 Apt Adenine/guanine ph 99.9 1.6E-25 3.5E-30 179.6 18.0 163 44-206 12-178 (179)
23 PRK13809 orotate phosphoribosy 99.9 2E-25 4.3E-30 182.6 16.1 149 51-211 33-184 (206)
24 PRK09219 xanthine phosphoribos 99.9 6.8E-25 1.5E-29 177.3 16.7 151 58-208 20-181 (189)
25 TIGR01744 XPRTase xanthine pho 99.9 9.6E-25 2.1E-29 176.8 17.0 148 62-210 27-183 (191)
26 PRK12560 adenine phosphoribosy 99.9 1.5E-24 3.2E-29 175.3 17.9 160 45-208 11-179 (187)
27 PRK13812 orotate phosphoribosy 99.9 1.4E-24 3E-29 173.8 14.7 143 53-211 28-173 (176)
28 TIGR01743 purR_Bsub pur operon 99.9 5.5E-24 1.2E-28 179.6 17.1 151 57-208 100-253 (268)
29 PRK09213 pur operon repressor; 99.9 7.8E-24 1.7E-28 179.1 16.8 151 57-208 102-255 (271)
30 PRK13811 orotate phosphoribosy 99.9 6.8E-24 1.5E-28 169.0 14.6 137 56-210 30-169 (170)
31 PRK05500 bifunctional orotidin 99.9 6.2E-24 1.4E-28 192.1 13.7 157 36-210 299-458 (477)
32 PRK08558 adenine phosphoribosy 99.9 3.2E-23 7E-28 173.1 16.8 150 56-206 82-238 (238)
33 PRK02277 orotate phosphoribosy 99.9 6.7E-23 1.4E-27 167.3 16.3 149 51-208 49-199 (200)
34 PRK00455 pyrE orotate phosphor 99.9 4.5E-23 9.8E-28 168.5 15.1 144 53-210 30-178 (202)
35 TIGR00336 pyrE orotate phospho 99.9 5E-23 1.1E-27 164.5 14.4 144 51-208 19-173 (173)
36 TIGR01367 pyrE_Therm orotate p 99.9 2.2E-22 4.7E-27 162.6 17.9 134 56-206 27-163 (187)
37 COG0461 PyrE Orotate phosphori 99.9 9.8E-23 2.1E-27 164.9 14.0 144 53-210 28-177 (201)
38 PRK07322 adenine phosphoribosy 99.9 3E-21 6.6E-26 154.9 16.9 152 43-195 11-167 (178)
39 PRK06031 phosphoribosyltransfe 99.8 4.5E-19 9.7E-24 147.6 16.6 150 58-207 54-220 (233)
40 PF00156 Pribosyltran: Phospho 99.8 1.2E-19 2.7E-24 136.3 11.6 122 62-185 2-125 (125)
41 COG0856 Orotate phosphoribosyl 99.8 1.3E-18 2.8E-23 135.9 12.9 140 56-206 54-198 (203)
42 COG1040 ComFC Predicted amidop 99.7 3.4E-18 7.3E-23 141.9 8.0 146 31-188 66-224 (225)
43 KOG1503 Phosphoribosylpyrophos 99.7 6.1E-18 1.3E-22 138.6 7.8 196 3-206 50-307 (354)
44 TIGR00201 comF comF family pro 99.7 1.4E-17 3E-22 134.9 8.7 120 65-185 56-189 (190)
45 PRK09162 hypoxanthine-guanine 99.7 2.8E-16 6.1E-21 126.4 13.7 119 65-191 17-140 (181)
46 PRK08525 amidophosphoribosyltr 99.7 1E-16 2.2E-21 145.1 11.6 137 68-206 259-400 (445)
47 TIGR01203 HGPRTase hypoxanthin 99.7 4.1E-16 8.8E-21 123.8 13.3 119 66-191 4-127 (166)
48 PF14572 Pribosyl_synth: Phosp 99.7 8.6E-17 1.9E-21 128.3 8.6 119 87-207 5-144 (184)
49 PRK11595 DNA utilization prote 99.7 3.1E-16 6.7E-21 130.4 10.9 122 64-187 84-226 (227)
50 PLN02238 hypoxanthine phosphor 99.7 2.6E-15 5.6E-20 121.6 15.2 135 64-207 11-160 (189)
51 PRK15423 hypoxanthine phosphor 99.6 6.4E-15 1.4E-19 118.2 12.7 118 65-191 9-135 (178)
52 PRK09177 xanthine-guanine phos 99.6 1.3E-14 2.9E-19 114.0 13.0 114 65-194 10-125 (156)
53 PRK05793 amidophosphoribosyltr 99.6 8.3E-15 1.8E-19 133.4 11.2 135 70-205 274-412 (469)
54 PRK09246 amidophosphoribosyltr 99.6 6.4E-15 1.4E-19 135.1 9.8 119 67-186 275-396 (501)
55 PRK05205 bifunctional pyrimidi 99.6 3.1E-14 6.7E-19 114.0 12.3 119 64-188 6-136 (176)
56 TIGR01134 purF amidophosphorib 99.6 3.9E-15 8.5E-20 134.7 7.7 140 68-210 257-423 (442)
57 PRK07272 amidophosphoribosyltr 99.6 3.5E-15 7.6E-20 135.9 6.9 138 71-210 272-435 (484)
58 PTZ00271 hypoxanthine-guanine 99.6 9.6E-14 2.1E-18 113.9 13.5 120 62-190 25-160 (211)
59 PLN02440 amidophosphoribosyltr 99.5 3.1E-14 6.7E-19 130.0 10.8 115 70-186 261-378 (479)
60 PRK06781 amidophosphoribosyltr 99.5 2.3E-14 4.9E-19 130.4 8.6 117 68-186 267-386 (471)
61 PRK07349 amidophosphoribosyltr 99.5 5.4E-14 1.2E-18 128.5 10.2 116 68-185 296-414 (500)
62 COG0634 Hpt Hypoxanthine-guani 99.5 4.9E-13 1.1E-17 105.3 12.9 120 63-191 10-136 (178)
63 PRK08341 amidophosphoribosyltr 99.5 9.9E-14 2.1E-18 125.3 10.3 115 68-185 255-371 (442)
64 PRK09123 amidophosphoribosyltr 99.5 2E-13 4.4E-18 124.5 11.9 114 68-183 279-395 (479)
65 PTZ00149 hypoxanthine phosphor 99.5 4.3E-13 9.3E-18 112.0 12.2 119 61-189 54-191 (241)
66 COG2236 Predicted phosphoribos 99.5 1.3E-13 2.9E-18 111.2 8.8 111 65-184 7-123 (192)
67 PRK07631 amidophosphoribosyltr 99.5 7.8E-14 1.7E-18 126.8 7.7 117 68-186 267-386 (475)
68 PRK06388 amidophosphoribosyltr 99.5 3.2E-13 7E-18 122.9 11.3 117 68-186 275-394 (474)
69 PRK07847 amidophosphoribosyltr 99.4 4.7E-13 1E-17 122.6 10.8 117 68-185 286-404 (510)
70 PRK00129 upp uracil phosphorib 99.3 1.7E-11 3.6E-16 100.8 11.9 99 87-195 72-171 (209)
71 COG0034 PurF Glutamine phospho 99.3 5.7E-12 1.2E-16 112.1 7.7 117 68-185 267-385 (470)
72 TIGR01091 upp uracil phosphori 99.3 4.8E-11 1E-15 98.0 11.8 99 87-195 70-169 (207)
73 COG2065 PyrR Pyrimidine operon 99.1 8.1E-10 1.7E-14 86.1 11.2 118 65-189 7-138 (179)
74 COG1926 Predicted phosphoribos 99.1 1.8E-09 4E-14 87.4 13.7 127 68-195 9-171 (220)
75 PF13793 Pribosyltran_N: N-ter 99.1 1E-11 2.2E-16 93.0 -2.4 57 3-65 42-113 (116)
76 KOG0572 Glutamine phosphoribos 99.0 1E-09 2.2E-14 95.7 6.1 112 71-184 278-392 (474)
77 KOG3367 Hypoxanthine-guanine p 98.8 3.5E-08 7.6E-13 77.5 9.3 121 59-189 31-166 (216)
78 PLN02541 uracil phosphoribosyl 98.5 9.3E-07 2E-11 74.2 10.7 49 147-195 156-206 (244)
79 COG0035 Upp Uracil phosphoribo 98.5 1.3E-06 2.8E-11 71.2 9.4 110 88-210 73-190 (210)
80 PF14681 UPRTase: Uracil phosp 98.4 3.9E-06 8.4E-11 68.9 10.2 98 87-195 69-170 (207)
81 PF15609 PRTase_2: Phosphoribo 98.2 4.7E-05 1E-09 61.3 12.1 124 66-189 32-163 (191)
82 PF15610 PRTase_3: PRTase ComF 96.7 0.011 2.4E-07 50.1 8.9 72 137-209 128-205 (274)
83 KOG1017 Predicted uracil phosp 95.7 0.062 1.3E-06 43.8 7.6 59 146-204 187-248 (267)
84 PF13793 Pribosyltran_N: N-ter 93.6 1.4 3E-05 32.7 10.1 75 95-183 8-86 (116)
85 PRK02812 ribose-phosphate pyro 91.0 2.8 6.1E-05 36.9 10.2 82 88-184 23-108 (330)
86 PTZ00145 phosphoribosylpyropho 90.3 3.7 7.9E-05 37.6 10.5 83 88-184 120-206 (439)
87 KOG1377 Uridine 5'- monophosph 90.0 1.3 2.7E-05 37.4 6.7 133 36-188 48-192 (261)
88 PRK07199 phosphoribosylpyropho 88.9 5.7 0.00012 34.4 10.3 76 95-184 10-88 (301)
89 PRK03092 ribose-phosphate pyro 88.9 3.7 7.9E-05 35.7 9.1 72 99-184 1-76 (304)
90 PLN02369 ribose-phosphate pyro 88.9 3.6 7.7E-05 35.7 9.0 73 98-184 2-78 (302)
91 PRK00934 ribose-phosphate pyro 88.7 4.5 9.8E-05 34.7 9.6 76 95-184 7-85 (285)
92 PRK01259 ribose-phosphate pyro 88.6 5.2 0.00011 34.8 9.9 76 95-184 8-87 (309)
93 PRK00553 ribose-phosphate pyro 88.6 5.6 0.00012 35.0 10.2 77 94-184 16-96 (332)
94 PRK02269 ribose-phosphate pyro 88.5 6.6 0.00014 34.4 10.6 76 95-184 13-92 (320)
95 PRK04923 ribose-phosphate pyro 87.4 7.7 0.00017 34.0 10.3 82 88-184 8-93 (319)
96 COG0462 PrsA Phosphoribosylpyr 87.1 3.4 7.4E-05 36.1 7.7 74 97-184 14-91 (314)
97 TIGR01251 ribP_PPkin ribose-ph 86.1 9.2 0.0002 33.2 10.0 76 95-184 8-88 (308)
98 PRK02458 ribose-phosphate pyro 83.6 17 0.00038 31.8 10.6 77 94-184 16-96 (323)
99 PLN02297 ribose-phosphate pyro 79.1 32 0.0007 30.3 10.7 83 88-184 18-104 (326)
100 PRK06827 phosphoribosylpyropho 77.1 35 0.00075 30.7 10.5 40 144-184 73-130 (382)
101 PF01488 Shikimate_DH: Shikima 68.1 12 0.00027 28.1 4.8 33 146-182 10-42 (135)
102 cd00158 RHOD Rhodanese Homolog 65.7 15 0.00033 24.3 4.5 33 146-181 48-80 (89)
103 smart00450 RHOD Rhodanese Homo 62.1 17 0.00037 24.4 4.3 33 145-180 53-85 (100)
104 cd01529 4RHOD_Repeats Member o 61.2 17 0.00036 25.2 4.1 33 146-181 54-86 (96)
105 cd01444 GlpE_ST GlpE sulfurtra 61.0 16 0.00034 25.0 4.0 33 145-180 53-85 (96)
106 PF11382 DUF3186: Protein of u 53.7 39 0.00085 29.4 5.9 44 146-189 81-124 (308)
107 TIGR01809 Shik-DH-AROM shikima 53.2 28 0.0006 29.7 4.9 33 146-182 123-155 (282)
108 PRK12342 hypothetical protein; 51.9 59 0.0013 27.5 6.6 42 72-113 96-141 (254)
109 COG3535 Uncharacterized conser 51.7 1.7E+02 0.0038 25.9 12.6 108 68-182 79-190 (357)
110 PRK04195 replication factor C 48.7 1.3E+02 0.0027 27.8 8.8 111 59-176 12-131 (482)
111 cd01523 RHOD_Lact_B Member of 48.2 37 0.00079 23.5 4.2 29 146-177 59-87 (100)
112 cd01715 ETF_alpha The electron 47.8 53 0.0011 25.5 5.4 42 72-113 70-112 (168)
113 PRK03359 putative electron tra 47.1 42 0.00092 28.4 5.0 42 72-113 99-144 (256)
114 cd01518 RHOD_YceA Member of th 46.8 42 0.00091 23.3 4.3 32 146-180 59-90 (101)
115 cd01714 ETF_beta The electron 44.9 56 0.0012 26.4 5.2 42 72-113 95-140 (202)
116 PF02684 LpxB: Lipid-A-disacch 44.5 70 0.0015 28.7 6.2 52 59-110 56-108 (373)
117 PF07931 CPT: Chloramphenicol 43.9 30 0.00066 27.5 3.5 37 147-186 82-119 (174)
118 PRK01021 lpxB lipid-A-disaccha 42.4 81 0.0018 30.3 6.5 55 59-113 284-341 (608)
119 COG1537 PelA Predicted RNA-bin 41.3 73 0.0016 28.4 5.6 55 149-205 290-349 (352)
120 cd01985 ETF The electron trans 40.5 69 0.0015 25.0 5.1 42 72-113 78-120 (181)
121 cd01528 RHOD_2 Member of the R 40.0 63 0.0014 22.4 4.3 31 147-180 57-87 (101)
122 PF01012 ETF: Electron transfe 39.7 49 0.0011 25.4 4.0 42 72-113 77-119 (164)
123 cd01532 4RHOD_Repeat_1 Member 39.0 49 0.0011 22.7 3.6 31 147-180 49-81 (92)
124 TIGR00215 lpxB lipid-A-disacch 39.0 98 0.0021 27.5 6.3 42 73-114 77-119 (385)
125 cd01519 RHOD_HSP67B2 Member of 38.6 59 0.0013 22.5 4.1 32 147-181 65-96 (106)
126 PF02875 Mur_ligase_C: Mur lig 37.3 59 0.0013 22.3 3.8 35 149-183 12-48 (91)
127 PF10865 DUF2703: Domain of un 37.3 36 0.00079 25.5 2.8 49 157-205 18-78 (120)
128 PRK00258 aroE shikimate 5-dehy 37.0 75 0.0016 26.9 5.1 33 146-182 121-153 (278)
129 COG0784 CheY FOG: CheY-like re 36.7 99 0.0022 21.7 5.1 26 147-175 4-29 (130)
130 PRK14027 quinate/shikimate deh 36.7 61 0.0013 27.7 4.5 33 146-182 125-157 (283)
131 PF12646 DUF3783: Domain of un 36.1 94 0.002 19.8 4.3 36 150-187 2-37 (58)
132 PRK05329 anaerobic glycerol-3- 35.9 96 0.0021 28.2 5.8 58 55-114 188-249 (422)
133 cd01525 RHOD_Kc Member of the 34.8 71 0.0015 22.1 3.9 31 147-180 64-94 (105)
134 PF05728 UPF0227: Uncharacteri 34.2 1.2E+02 0.0025 24.4 5.4 39 75-114 47-87 (187)
135 COG0371 GldA Glycerol dehydrog 33.2 80 0.0017 28.2 4.7 40 75-114 74-114 (360)
136 PF04723 GRDA: Glycine reducta 32.7 89 0.0019 24.1 4.2 36 146-183 3-38 (150)
137 cd01524 RHOD_Pyr_redox Member 32.7 94 0.002 21.0 4.2 29 145-176 48-76 (90)
138 TIGR00111 pelota probable tran 32.4 1.1E+02 0.0023 27.2 5.4 55 149-205 295-349 (351)
139 COG2984 ABC-type uncharacteriz 32.4 3.5E+02 0.0077 23.8 8.9 40 72-114 75-115 (322)
140 PRK12749 quinate/shikimate deh 32.4 82 0.0018 27.0 4.6 34 146-183 122-155 (288)
141 cd01527 RHOD_YgaP Member of th 32.3 80 0.0017 21.7 3.8 31 146-179 52-82 (99)
142 PF14502 HTH_41: Helix-turn-he 31.6 65 0.0014 20.1 2.8 20 160-179 19-38 (48)
143 cd01534 4RHOD_Repeat_3 Member 31.6 1.1E+02 0.0023 20.9 4.4 28 147-177 55-82 (95)
144 cd01447 Polysulfide_ST Polysul 31.6 51 0.0011 22.7 2.7 32 146-180 59-90 (103)
145 PF07726 AAA_3: ATPase family 31.3 2.4E+02 0.0051 21.5 7.3 74 98-174 14-89 (131)
146 PRK04940 hypothetical protein; 31.1 1.7E+02 0.0036 23.5 5.8 30 85-115 60-89 (180)
147 PRK12446 undecaprenyldiphospho 31.0 3E+02 0.0065 24.1 8.0 33 80-114 86-120 (352)
148 PF11760 CbiG_N: Cobalamin syn 30.8 1.3E+02 0.0027 21.1 4.4 14 97-110 63-76 (84)
149 PF04392 ABC_sub_bind: ABC tra 30.5 2E+02 0.0044 24.2 6.7 104 74-180 48-165 (294)
150 PRK12548 shikimate 5-dehydroge 28.6 1.2E+02 0.0027 25.8 5.1 34 146-183 124-157 (289)
151 cd01577 IPMI_Swivel Aconatase- 28.5 78 0.0017 22.5 3.1 40 149-188 18-57 (91)
152 PLN02160 thiosulfate sulfurtra 28.5 97 0.0021 23.2 3.9 32 146-180 79-110 (136)
153 PRK00676 hemA glutamyl-tRNA re 28.4 1.2E+02 0.0026 26.9 5.0 32 146-181 172-203 (338)
154 PRK11024 colicin uptake protei 27.5 1.8E+02 0.004 21.9 5.4 37 147-183 102-138 (141)
155 cd01533 4RHOD_Repeat_2 Member 27.4 1.2E+02 0.0027 21.2 4.2 29 147-178 65-93 (109)
156 TIGR02981 phageshock_pspE phag 27.4 1.4E+02 0.0031 21.1 4.5 32 147-181 57-88 (101)
157 PF03681 UPF0150: Uncharacteri 27.0 21 0.00045 21.7 -0.0 19 156-174 23-41 (48)
158 PRK05320 rhodanese superfamily 26.6 1.2E+02 0.0027 25.5 4.6 31 147-180 174-204 (257)
159 PRK13265 glycine/sarcosine/bet 26.6 1.2E+02 0.0026 23.4 4.0 36 146-183 4-39 (154)
160 PRK13940 glutamyl-tRNA reducta 26.4 1.1E+02 0.0023 27.9 4.5 32 146-181 179-210 (414)
161 cd01449 TST_Repeat_2 Thiosulfa 26.4 1.1E+02 0.0025 21.5 3.9 32 146-180 76-107 (118)
162 PRK12549 shikimate 5-dehydroge 26.4 1.2E+02 0.0025 25.9 4.5 36 146-188 125-160 (284)
163 cd00404 Aconitase_swivel Aconi 26.4 1.2E+02 0.0026 21.4 3.8 39 147-185 14-52 (88)
164 TIGR02801 tolR TolR protein. T 26.2 2E+02 0.0043 21.1 5.3 37 147-183 92-128 (129)
165 cd01522 RHOD_1 Member of the R 26.2 1.1E+02 0.0024 22.0 3.8 31 147-180 63-93 (117)
166 COG5418 Predicted secreted pro 25.8 1.2E+02 0.0025 23.7 3.9 46 47-93 57-106 (164)
167 cd03785 GT1_MurG MurG is an N- 25.8 3.4E+02 0.0074 22.8 7.4 38 76-113 80-117 (350)
168 cd08177 MAR Maleylacetate redu 25.2 1.9E+02 0.0042 25.1 5.8 42 73-114 65-107 (337)
169 cd01526 RHOD_ThiF Member of th 24.8 1.1E+02 0.0023 22.1 3.5 33 146-181 70-103 (122)
170 PRK11267 biopolymer transport 24.8 2.2E+02 0.0047 21.5 5.3 37 147-183 98-134 (141)
171 COG2072 TrkA Predicted flavopr 24.6 1.1E+02 0.0023 28.0 4.2 29 145-177 172-200 (443)
172 PF13189 Cytidylate_kin2: Cyti 24.6 60 0.0013 25.5 2.2 20 94-113 10-29 (179)
173 PF13738 Pyr_redox_3: Pyridine 24.3 1.2E+02 0.0026 23.5 4.0 30 146-180 165-194 (203)
174 PRK10287 thiosulfate:cyanide s 24.1 1.9E+02 0.0041 20.7 4.6 31 147-180 59-89 (104)
175 cd08172 GlyDH-like1 Glycerol d 24.1 2E+02 0.0043 25.1 5.6 41 74-114 65-106 (347)
176 PF07728 AAA_5: AAA domain (dy 24.0 2.9E+02 0.0062 20.0 6.1 86 88-175 3-92 (139)
177 TIGR03865 PQQ_CXXCW PQQ-depend 24.0 1.5E+02 0.0033 22.9 4.4 33 146-181 114-147 (162)
178 cd08170 GlyDH Glycerol dehydro 23.7 2E+02 0.0044 25.1 5.6 41 74-114 66-107 (351)
179 KOG0519 Sensory transduction h 23.7 1E+02 0.0022 30.5 4.0 35 145-182 663-697 (786)
180 PRK01641 leuD isopropylmalate 23.7 1.2E+02 0.0025 24.8 3.8 42 147-188 66-107 (200)
181 PRK14089 ipid-A-disaccharide s 23.5 2.3E+02 0.005 25.1 5.9 29 84-113 75-107 (347)
182 PRK08057 cobalt-precorrin-6x r 23.2 1.9E+02 0.0041 24.3 5.1 37 81-117 186-224 (248)
183 cd08550 GlyDH-like Glycerol_de 23.2 2E+02 0.0043 25.1 5.5 41 74-114 66-107 (349)
184 cd01520 RHOD_YbbB Member of th 23.1 1.9E+02 0.0041 21.1 4.6 31 145-177 83-113 (128)
185 PF01555 N6_N4_Mtase: DNA meth 22.6 67 0.0015 25.3 2.2 21 150-170 192-212 (231)
186 COG0763 LpxB Lipid A disacchar 22.4 2.2E+02 0.0048 25.7 5.5 40 74-113 74-116 (381)
187 cd08173 Gro1PDH Sn-glycerol-1- 22.4 2.1E+02 0.0047 24.8 5.5 41 74-114 67-108 (339)
188 PRK09423 gldA glycerol dehydro 22.3 2E+02 0.0043 25.4 5.3 41 74-114 73-114 (366)
189 PRK12550 shikimate 5-dehydroge 22.3 1.1E+02 0.0023 26.2 3.4 32 147-182 121-152 (272)
190 PRK13584 hisG ATP phosphoribos 22.0 40 0.00087 27.7 0.7 19 155-180 149-167 (204)
191 cd07766 DHQ_Fe-ADH Dehydroquin 22.0 2.5E+02 0.0054 24.1 5.8 40 75-114 68-110 (332)
192 cd08171 GlyDH-like2 Glycerol d 22.0 2.2E+02 0.0047 24.9 5.5 39 76-114 69-108 (345)
193 cd05191 NAD_bind_amino_acid_DH 21.8 2.6E+02 0.0057 18.8 4.9 33 146-182 21-53 (86)
194 TIGR02803 ExbD_1 TonB system t 21.7 2.8E+02 0.0061 20.1 5.3 37 148-184 85-121 (122)
195 PRK13947 shikimate kinase; Pro 21.3 89 0.0019 23.8 2.6 27 88-114 5-32 (171)
196 COG2086 FixA Electron transfer 21.3 2.1E+02 0.0045 24.4 4.9 42 72-113 98-143 (260)
197 KOG0081 GTPase Rab27, small G 21.1 2.4E+02 0.0053 22.5 4.9 29 85-113 124-160 (219)
198 PTZ00428 60S ribosomal protein 21.0 1.9E+02 0.0041 26.1 4.8 25 152-176 151-175 (381)
199 PF03192 DUF257: Pyrococcus pr 21.0 59 0.0013 26.7 1.5 21 150-170 40-60 (210)
200 TIGR01426 MGT glycosyltransfer 20.9 2.8E+02 0.0061 24.2 6.0 34 78-113 85-118 (392)
201 COG0169 AroE Shikimate 5-dehyd 20.8 1.2E+02 0.0025 26.2 3.4 33 146-182 124-156 (283)
202 PF10662 PduV-EutP: Ethanolami 20.8 1E+02 0.0022 23.7 2.8 25 156-180 100-124 (143)
203 PF00694 Aconitase_C: Aconitas 20.7 1.6E+02 0.0035 22.3 3.8 37 147-183 72-109 (131)
204 PF13685 Fe-ADH_2: Iron-contai 20.5 91 0.002 26.3 2.6 38 77-114 67-105 (250)
205 PF13604 AAA_30: AAA domain; P 20.3 4.4E+02 0.0095 20.8 6.8 33 147-179 92-125 (196)
206 PRK01686 hisG ATP phosphoribos 20.3 48 0.0011 27.4 0.9 18 156-180 160-177 (215)
207 COG3958 Transketolase, C-termi 20.2 5.7E+02 0.012 22.4 7.3 47 137-184 180-229 (312)
208 TIGR02804 ExbD_2 TonB system t 20.1 3.4E+02 0.0074 19.7 5.4 37 147-183 83-119 (121)
No 1
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-38 Score=267.65 Aligned_cols=187 Identities=22% Similarity=0.264 Sum_probs=154.9
Q ss_pred cccccceeeEEEeeecccCcccceeeeeeeeee---------------eeeecceeeeeecCCCCCCeeheeHHHHhcCH
Q 028297 3 SEETRGYRAFLKQSVWCLTSQYQVSFSFFFLFF---------------CFVFSSWSFFFFQIWWAAGIMFQDITTLLLDH 67 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~~ 67 (211)
.|||||+||||+||+++| +|+|+||++. ++||++|+||+....+++||+.+.+++++...
T Consensus 46 ~EsVrg~dVfI~qs~~~p-----vnd~lmELLi~idA~k~asA~~It~ViPY~gYARQDk~~~~repIsaklvA~lL~~a 120 (314)
T COG0462 46 EESVRGKDVFIIQSTSPP-----VNDNLMELLIMIDALKRASAKRITAVIPYFGYARQDKAFKPREPISAKLVANLLETA 120 (314)
T ss_pred cccccCCeEEEEeCCCCC-----cCHHHHHHHHHHHHHHhcCCceEEEEeecchhhccCcccCCCCCEeHHHHHHHHHHc
Confidence 599999999999999976 9999999843 79999999999655899999999999999877
Q ss_pred HHHH-HHHHHHHHHHhh---------------------c-C--CcEEEEecCCccchHHHHHHHhCCCeEEeecCCC-CC
Q 028297 68 KAFK-DTVDIFVDRYRD---------------------M-G--ISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNK-LP 121 (211)
Q Consensus 68 ~~~~-~~~~~la~~i~~---------------------~-~--~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~-~~ 121 (211)
+..+ .+.+.|+.++++ . . -.+||+|+.||..+|+.+|+.||.|+.++.|+|. .+
T Consensus 121 G~drv~TvDlH~~qiqgfFdipvdnl~a~p~l~~~~~~~~~~~d~vVVSPD~Ggv~RAr~~A~~L~~~~a~i~K~R~~~~ 200 (314)
T COG0462 121 GADRVLTVDLHAPQIQGFFDIPVDNLYAAPLLAEYIREKYDLDDPVVVSPDKGGVKRARALADRLGAPLAIIDKRRDSSP 200 (314)
T ss_pred CCCeEEEEcCCchhhcccCCCccccccchHHHHHHHHHhcCCCCcEEECCCccHHHHHHHHHHHhCCCEEEEEEeecCCC
Confidence 6666 666666666442 2 1 2499999999999999999999999999998884 33
Q ss_pred CceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCCe
Q 028297 122 GEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPL 199 (211)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~l 199 (211)
+.. .+....+++ +||+|+|||||++||+|+..|+++|++.||++|+++|+|+.++ +.+++++..+
T Consensus 201 ~~v------------~~~~~~gdV-~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs~~a~~~l~~~~i 267 (314)
T COG0462 201 NVV------------EVMNLIGDV-EGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFSGAALERLEASAI 267 (314)
T ss_pred CeE------------EEeeccccc-CCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEEEchhhChHHHHHHhcCCC
Confidence 322 111123554 9999999999999999999999999999999999999999998 7788887677
Q ss_pred EEEEcccc
Q 028297 200 YILVEPRL 207 (211)
Q Consensus 200 ~sl~~~~~ 207 (211)
..++.-+.
T Consensus 268 ~~vivTnT 275 (314)
T COG0462 268 DEVIVTDT 275 (314)
T ss_pred CEEEEeCC
Confidence 77765443
No 2
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism]
Probab=100.00 E-value=2e-32 Score=210.43 Aligned_cols=165 Identities=66% Similarity=1.097 Sum_probs=158.1
Q ss_pred eeeeeecCCCCCCeeheeHHHHhcCHHHHHHHHHHHHHHHhh---cCCcEEEEecCCccchHHHHHHHhCCCeEEeecCC
Q 028297 42 WSFFFFQIWWAAGIMFQDITTLLLDHKAFKDTVDIFVDRYRD---MGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPN 118 (211)
Q Consensus 42 ~~~~~~~~~~~~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~---~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~ 118 (211)
.+.+.+|+||.+||.+.|+..++.||..++.+.+.+.+++++ .++|+|++++.|||.++..+|.++|++++.+||.+
T Consensus 13 ~~ir~~pdFPk~GI~F~Di~pll~dP~af~~lidlf~~h~~~~~~~~Id~iaGlEaRGFLFGP~iAlalG~~fVPiRK~g 92 (183)
T KOG1712|consen 13 TAIRVVPDFPKKGIMFQDITPLLLDPKAFKKLIDLFVDHYRETFEMKIDVIAGLEARGFLFGPSIALALGAGFVPIRKPG 92 (183)
T ss_pred HhheeCCCCCCCceehhhhhhhhcCHHHHHHHHHHHHHHHHHHhcCcceEEEeeeecceecCcHHHHHhCCCeeecccCC
Confidence 445679999999999999999999999999999999999987 47999999999999999999999999999999999
Q ss_pred CCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCC
Q 028297 119 KLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDG 196 (211)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~ 196 (211)
++|+++.+.+|..+|+.+.+++..+.+.+|.+|+||||++.||+|+.+|.++|.+.||+++.++|+++.++ |+++|.+
T Consensus 93 KLPG~~i~~~Y~lEYg~d~~Emq~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vvE~~~vieL~~LkGr~kL~~ 172 (183)
T KOG1712|consen 93 KLPGEVISESYELEYGEDRFEMQKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVVECACVIELPELKGREKLKG 172 (183)
T ss_pred CCCCceeEEEEeeecCccceeeeccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEEEEEEEEEccccCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988 9999999
Q ss_pred CCeEEEEccc
Q 028297 197 KPLYILVEPR 206 (211)
Q Consensus 197 ~~l~sl~~~~ 206 (211)
.|+++|+++.
T Consensus 173 ~pl~~Ll~~~ 182 (183)
T KOG1712|consen 173 KPLFSLLEYQ 182 (183)
T ss_pred CccEEEeecC
Confidence 9999999875
No 3
>PLN02293 adenine phosphoribosyltransferase
Probab=99.97 E-value=2.1e-30 Score=209.16 Aligned_cols=163 Identities=79% Similarity=1.245 Sum_probs=149.6
Q ss_pred eeecCCCCCCeeheeHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCce
Q 028297 45 FFFQIWWAAGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEV 124 (211)
Q Consensus 45 ~~~~~~~~~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~ 124 (211)
+.+++||.+++.|+|++.++.+|+.++.+++.+++++++.++|+|++++.+|+++|..+|..|++|+..+||.++.++..
T Consensus 22 ~~~~~~p~~gi~f~D~~~l~~~p~~~~~~~~~l~~~~~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~rK~~k~~~~~ 101 (187)
T PLN02293 22 RVVPDFPKPGIMFQDITTLLLDPKAFKDTIDLFVERYRDMGISVVAGIEARGFIFGPPIALAIGAKFVPLRKPGKLPGEV 101 (187)
T ss_pred ccCCCCCcCCcEEEECHHHhhCHHHHHHHHHHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHCCCEEEEEecCCCCCce
Confidence 56899999999999999999999999999999999998878999999999999999999999999999999988887777
Q ss_pred eeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCCeEEE
Q 028297 125 ISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYIL 202 (211)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~l~sl 202 (211)
.+..+..+++++.+++..+.+.+|++||||||+++||+|+.+++++|+++|++.++++++++.++ +++++.++|+++|
T Consensus 102 ~~~~~~~~~g~~~l~l~~~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v~~~~~~~~~~~~g~~~l~~~~~~sl 181 (187)
T PLN02293 102 ISEEYVLEYGTDCLEMHVGAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVVECACVIELPELKGREKLNGKPLFVL 181 (187)
T ss_pred EEEEEeccCCceEEEEEcCccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEEEEEEEEEcCCccHHHHhcCCceEEE
Confidence 76666667777777766666668999999999999999999999999999999999999999887 9999999999999
Q ss_pred Ecccc
Q 028297 203 VEPRL 207 (211)
Q Consensus 203 ~~~~~ 207 (211)
+++++
T Consensus 182 ~~~~~ 186 (187)
T PLN02293 182 VESRG 186 (187)
T ss_pred EecCC
Confidence 98865
No 4
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.97 E-value=3.5e-31 Score=229.82 Aligned_cols=189 Identities=16% Similarity=0.199 Sum_probs=149.1
Q ss_pred cccccceeeEEEeeecccCcccceeeeeeeeee---------------eeeecceeeeeecCCCCCCeeheeHHHHhcCH
Q 028297 3 SEETRGYRAFLKQSVWCLTSQYQVSFSFFFLFF---------------CFVFSSWSFFFFQIWWAAGIMFQDITTLLLDH 67 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~~ 67 (211)
.|+|||+||||+||++.| +|+++||++. ++||++|++|++...++++++.+.+++++...
T Consensus 47 ~~~vrg~dV~iv~s~~~~-----~nd~lmelll~~~alr~~~a~~i~~V~PYl~YaRQDr~~~~~e~isak~~a~ll~~~ 121 (320)
T PRK02269 47 EESIRGHHVFILQSTSSP-----VNDNLMEILIMVDALKRASAESINVVMPYYGYARQDRKARSREPITSKLVANMLEVA 121 (320)
T ss_pred CCCCCCCEEEEEecCCCC-----ccchHHHHHHHHHHHHHhCCCeEEEEEeccccchhhcccCCCCCchHHHHHHHHhhc
Confidence 489999999999999755 8999999843 79999999999999999999999999888642
Q ss_pred ----------------------HHHHHHHHHHHHHHhhc----CCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCC
Q 028297 68 ----------------------KAFKDTVDIFVDRYRDM----GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP 121 (211)
Q Consensus 68 ----------------------~~~~~~~~~la~~i~~~----~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~ 121 (211)
-..-.....+++++.+. +..+||+|+.||..+|..+|+.||+|+..++|++...
T Consensus 122 g~d~vit~D~H~~~~~~~f~~p~~~l~~~p~l~~~i~~~~~~~~~~vvVsPd~G~~~~A~~lA~~lg~~~~~~~k~r~~~ 201 (320)
T PRK02269 122 GVDRLLTVDLHAAQIQGFFDIPVDHLMGAPLIADYFDRRGLVGDDVVVVSPDHGGVTRARKLAQFLKTPIAIIDKRRSVD 201 (320)
T ss_pred CCCEEEEECCChHHHhccccCCchhhhhHHHHHHHHHHhCCCCCCcEEEEECccHHHHHHHHHHHhCCCEEEEEecccCC
Confidence 11123344455555443 2358999999999999999999999998877765321
Q ss_pred CceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCCe
Q 028297 122 GEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPL 199 (211)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~l 199 (211)
.... ...+.+ .+. .+||+|||||||+|||+|+.++++.|+++||++|+++|+|+.++ +.++|.+.++
T Consensus 202 ~~~~---------~~~~~~-~gd-v~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHglf~~~a~~~l~~~~i 270 (320)
T PRK02269 202 KMNT---------SEVMNI-IGN-VKGKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHPVLSGPALDNIQKSAI 270 (320)
T ss_pred CCce---------eEEEEe-ccc-cCCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEEEEECcccCchHHHHHHhCCC
Confidence 1000 112222 245 48999999999999999999999999999999999999999987 7788877678
Q ss_pred EEEEcccc
Q 028297 200 YILVEPRL 207 (211)
Q Consensus 200 ~sl~~~~~ 207 (211)
..+++-+-
T Consensus 271 ~~iv~Tdt 278 (320)
T PRK02269 271 EKLVVLDT 278 (320)
T ss_pred CEEEEeCC
Confidence 77776554
No 5
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.97 E-value=5.3e-31 Score=226.93 Aligned_cols=186 Identities=19% Similarity=0.188 Sum_probs=146.8
Q ss_pred cccccceeeEEEeeecccCcccceeeeeeeeee---------------eeeecceeeeeecCCCCCCeeheeHHHHhcCH
Q 028297 3 SEETRGYRAFLKQSVWCLTSQYQVSFSFFFLFF---------------CFVFSSWSFFFFQIWWAAGIMFQDITTLLLDH 67 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~~ 67 (211)
.|+|||+||||+||+++| |++|||++. ++||++|++|++...++++++.+.+++++..
T Consensus 44 ~~~v~g~~V~ivqs~~~~------n~~l~elll~~~alr~~~a~~i~~ViPY~~YaRqDr~~~~ge~isak~vA~ll~~- 116 (301)
T PRK07199 44 DSPVAGRTVVLVCSLDRP------DEKLLPLLFAAEAARELGARRVGLVAPYLAYMRQDIAFHPGEAISQRHFARLLSG- 116 (301)
T ss_pred CCCCCCCEEEEECCCCCC------cHHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCccHHHHHHHHHh-
Confidence 379999999999998743 889999843 7999999999999999999999999998852
Q ss_pred HHHH-------------------------HHHHHHHHHHhhc-CCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCC
Q 028297 68 KAFK-------------------------DTVDIFVDRYRDM-GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP 121 (211)
Q Consensus 68 ~~~~-------------------------~~~~~la~~i~~~-~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~ 121 (211)
+..+ .....+++++.+. +.++|++|+.||..+|..+|+.+++|+..++|++...
T Consensus 117 ~~d~vit~DlH~~~~~~~~~~f~ip~~nl~~~~~la~~l~~~~~~~vVVsPd~g~~~~a~~la~~l~~~~~~~~K~R~~~ 196 (301)
T PRK07199 117 SFDRLVTVDPHLHRYPSLSEVYPIPAVVLSAAPAIAAWIRAHVPRPLLIGPDEESEQWVAAVAERAGAPHAVLRKTRHGD 196 (301)
T ss_pred hcCeEEEEeccchhhHHhcCcccCCccccchHHHHHHHHHhcCCCcEEEEeCCChHHHHHHHHHHhCCCEEEEEEEecCC
Confidence 1111 2334445555432 3469999999999999999999999998888766432
Q ss_pred CceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCCe
Q 028297 122 GEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPL 199 (211)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~l 199 (211)
+.. .+....+...+||+|+|||||+|||+|+.++++.|+++||++|+++++|+.++ +.++|++.++
T Consensus 197 ~~~------------~~~~~~~~~v~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgvfs~~a~~~l~~~~i 264 (301)
T PRK07199 197 RDV------------EISLPDAAPWAGRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCVVVHALFAGDAYSALAAAGI 264 (301)
T ss_pred CeE------------EEEeccCcccCCCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEEeeeCChHHHHHHHhCCC
Confidence 211 11111233359999999999999999999999999999999999999999887 7888876667
Q ss_pred EEEEcccc
Q 028297 200 YILVEPRL 207 (211)
Q Consensus 200 ~sl~~~~~ 207 (211)
..+++-+-
T Consensus 265 ~~iv~Tdt 272 (301)
T PRK07199 265 ARVVSTDT 272 (301)
T ss_pred CEEEEeCC
Confidence 77766543
No 6
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.97 E-value=2.5e-31 Score=231.48 Aligned_cols=187 Identities=20% Similarity=0.209 Sum_probs=147.0
Q ss_pred cccccceeeEEEeeecccCcccceeeeeeeeee---------------eeeecceeeeeecCCCCCCeeheeHHHHhcCH
Q 028297 3 SEETRGYRAFLKQSVWCLTSQYQVSFSFFFLFF---------------CFVFSSWSFFFFQIWWAAGIMFQDITTLLLDH 67 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~~ 67 (211)
.|+|||+||||+||++.| +|+++||++. ++||++|++|++...++++++.+.+++++...
T Consensus 51 ~~~vrg~dV~ivqs~~~p-----~nd~l~eLll~~~alr~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~vA~ll~~~ 125 (332)
T PRK00553 51 DESVRNKDVVIFQSTCSP-----VNDSLMELLIAIDALKRGSAKSITAILPYYGYARQDRKTAGREPITSKLVADLLTKA 125 (332)
T ss_pred CCCCCCCEEEEEcCCCCC-----CchHHHHHHHHHHHHHHcCCCeEEEEeeccccchhhcccCCCCCccHHHHHHHHHhc
Confidence 379999999999999766 7999999843 79999999999999999999999999988642
Q ss_pred HHHH----------------------HHHHHHHHHHhh---cCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCC
Q 028297 68 KAFK----------------------DTVDIFVDRYRD---MGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPG 122 (211)
Q Consensus 68 ~~~~----------------------~~~~~la~~i~~---~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~ 122 (211)
+..+ .....+++++.+ .+..+|++|+.||..+|..+|+.||+|+..++|++...+
T Consensus 126 g~d~vit~DlH~~~i~~~F~ipv~~l~a~~~~~~~~~~~~~~~~~vvVsPD~gg~~rA~~lA~~lg~~~~vi~K~r~~~~ 205 (332)
T PRK00553 126 GVTRVTLTDIHSDQTQGFFDIPVDILRTYHVFLSRVLELLGKKDLVVVSPDYGGVKRARLIAESLELPLAIIDKRRPKHN 205 (332)
T ss_pred CCCEEEEEeCChHHHHhhcCCCcceeechHHHHHHHHHhcCCCCeEEEEECCCcHHHHHHHHHHhCCCEEEEEEecCCcc
Confidence 1111 122234444433 133489999999999999999999999999888764322
Q ss_pred ceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCC----
Q 028297 123 EVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDG---- 196 (211)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~---- 196 (211)
. ...+.+ .+. .+||+|+|||||++||+|+.++++.|+++||+.|+++++|+.++ +.++|.+
T Consensus 206 ~-----------~~~~~~-~gd-v~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~~~~~~ 272 (332)
T PRK00553 206 V-----------AESINV-LGE-VKNKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLFNKNAIQLFDEAFKK 272 (332)
T ss_pred e-----------EeeEEe-ecc-CCCCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEeeecCchHHHHHHhcccc
Confidence 1 112332 244 49999999999999999999999999999999999999999987 7777753
Q ss_pred CCeEEEEcccc
Q 028297 197 KPLYILVEPRL 207 (211)
Q Consensus 197 ~~l~sl~~~~~ 207 (211)
.++..+++-+-
T Consensus 273 ~~i~~iv~Tnt 283 (332)
T PRK00553 273 KLIDKLFVSNS 283 (332)
T ss_pred CCCCEEEEeCC
Confidence 36777776544
No 7
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.97 E-value=4.7e-31 Score=234.78 Aligned_cols=187 Identities=19% Similarity=0.234 Sum_probs=149.0
Q ss_pred cccccceeeEEEeeecccCcccceeeeeeeeee---------------eeeecceeeeeecCCCCCCeeheeHHHHhcCH
Q 028297 3 SEETRGYRAFLKQSVWCLTSQYQVSFSFFFLFF---------------CFVFSSWSFFFFQIWWAAGIMFQDITTLLLDH 67 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~~ 67 (211)
.|+|||+|||||||++.| +|++|||++. ++||++|++|++...++++++.+.+++++...
T Consensus 161 ~e~VrG~dV~IVqS~~~p-----vNd~LmELLllidAlr~agAkrItlViPYl~YaRQDR~~~~gepIsak~vA~lL~~~ 235 (439)
T PTZ00145 161 LESIRGKDVYIIQPTCPP-----VNENLIELLLMISTCRRASAKKITAVIPYYGYARQDRKLSSRVPISAADVARMIEAM 235 (439)
T ss_pred CCCcCCCeEEEEecCCCC-----CcHHHHHHHHHHHHHHHhccCeEEEEeecccchheecccCCCCChhHHHHHHHHHHc
Confidence 489999999999999866 8999999843 79999999999999899999999999998643
Q ss_pred HHHH-HH-----------------------HHHHHHHHhhc--CCcEEEEecCCccchHHHHHHHhC------CCeEEee
Q 028297 68 KAFK-DT-----------------------VDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIG------AKFVPLR 115 (211)
Q Consensus 68 ~~~~-~~-----------------------~~~la~~i~~~--~~d~Iv~i~~gG~~~A~~lA~~L~------~p~~~~~ 115 (211)
+..+ .+ ...+++++... ...+||+|+.||..+|+.+|..|+ +++..+.
T Consensus 236 G~d~VitvDlHs~~i~~fF~~~iPvdnl~a~~~~a~~i~~~~l~~pVVVsPD~Ga~~RAr~~A~~L~~~~~~~~~~avl~ 315 (439)
T PTZ00145 236 GVDRVVAIDLHSGQIQGFFGPRVPVDNLEAQLIGLDYFTKKDLYKPVIVSPDAGGVYRARKFQDGLNHRGISDCGIAMLI 315 (439)
T ss_pred CCCeEEEEecChHHHHhhcCCCcccccccccHHHHHHHhhcCCCccEEEccCcchHHHHHHHHHHhccccccCCCEEEEE
Confidence 1111 11 12234444332 235899999999999999999997 7888888
Q ss_pred cCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcc
Q 028297 116 KPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRR 193 (211)
Q Consensus 116 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~ 193 (211)
|+|..+++.. .+.+ .++ ++||+|+|||||++||+|+.+|++.|+++||+.|+++++|+.++ +.++
T Consensus 316 K~R~~~~~v~-----------~~~l-vgd-V~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA~~V~~~~THglfs~~A~~r 382 (439)
T PTZ00145 316 KQRTKPNEIE-----------KMDL-VGN-VYDSDVIIVDDMIDTSGTLCEAAKQLKKHGARRVFAFATHGLFSGPAIER 382 (439)
T ss_pred eecCCCCceE-----------EEec-cCC-CCCCEEEEEcceeCcHHHHHHHHHHHHHcCCCEEEEEEEcccCChhHHHH
Confidence 7775433221 2332 245 49999999999999999999999999999999999999999997 7888
Q ss_pred cCCCCeEEEEcccc
Q 028297 194 LDGKPLYILVEPRL 207 (211)
Q Consensus 194 l~~~~l~sl~~~~~ 207 (211)
|.+.++..+++-+-
T Consensus 383 l~~s~i~~IvvTdT 396 (439)
T PTZ00145 383 IEASPLEEVVVTDT 396 (439)
T ss_pred HhcCCCCEEEEeCC
Confidence 98778888876554
No 8
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.97 E-value=8.5e-31 Score=227.01 Aligned_cols=187 Identities=18% Similarity=0.179 Sum_probs=145.3
Q ss_pred cccccceeeEEEeeecccCcccceeeeeeeeee---------------eeeecceeeeeecCC-CCCCeeheeHHHHhcC
Q 028297 3 SEETRGYRAFLKQSVWCLTSQYQVSFSFFFLFF---------------CFVFSSWSFFFFQIW-WAAGIMFQDITTLLLD 66 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~-~~~~i~~~d~~~l~~~ 66 (211)
.|+|||+||||+||++.| +|+++||++. ++||++|++|++... ++++++.+.+++++..
T Consensus 48 ~~~v~g~~V~iiqs~~~p-----~nd~lmeLl~~~~alr~~~a~~i~~ViPYl~YaRQDr~~~~~~~~isak~va~ll~~ 122 (319)
T PRK04923 48 EESVRRQEVFVIQPTCAP-----SAENLMELLVLIDALKRASAASVTAVIPYFGYSRQDRRMRSSRVPITAKVAAKMISA 122 (319)
T ss_pred CCCcCCCeEEEEecCCCC-----CchHHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccCCCCCccHHHHHHHHHh
Confidence 478999999999999766 7999999843 799999999999874 4678999999988864
Q ss_pred HHHHH----------------------HHHHHHHHHHhh---cCCcEEEEecCCccchHHHHHHHhC-CCeEEeecCCCC
Q 028297 67 HKAFK----------------------DTVDIFVDRYRD---MGISVVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKL 120 (211)
Q Consensus 67 ~~~~~----------------------~~~~~la~~i~~---~~~d~Iv~i~~gG~~~A~~lA~~L~-~p~~~~~k~~~~ 120 (211)
.+..+ .....+++++.+ .+..+||+|+.||..+|..+|+.|+ +|+..+.|+|..
T Consensus 123 ~g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~~~~~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~ 202 (319)
T PRK04923 123 MGADRVLTVDLHADQIQGFFDVPVDNVYASPLLLADIWRAYGTDNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPR 202 (319)
T ss_pred cCCCEEEEEeCChHHHHhhcCCCceeeeChHHHHHHHHHhcCCCCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCC
Confidence 21111 112233444422 1335899999999999999999998 899998887643
Q ss_pred CCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCC
Q 028297 121 PGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKP 198 (211)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~ 198 (211)
.+.. ..+.. .+. .+||+|+|||||++||+|+.++++.|+++||++|+++++|+.++ +.++|++.+
T Consensus 203 ~~~~-----------~~~~~-~gd-v~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~THgvfs~~a~~~l~~s~ 269 (319)
T PRK04923 203 ANVA-----------TVMNI-IGD-VQGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVLSGPAVDNINNSQ 269 (319)
T ss_pred CCce-----------EEEec-ccC-CCCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEEEECcccCchHHHHHhhCC
Confidence 2211 12222 245 49999999999999999999999999999999999999999997 778887777
Q ss_pred eEEEEcccc
Q 028297 199 LYILVEPRL 207 (211)
Q Consensus 199 l~sl~~~~~ 207 (211)
+..+++-+-
T Consensus 270 i~~iv~Tdt 278 (319)
T PRK04923 270 LDELVVTDT 278 (319)
T ss_pred CCEEEEeCC
Confidence 777776543
No 9
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.97 E-value=1.1e-30 Score=225.36 Aligned_cols=189 Identities=22% Similarity=0.198 Sum_probs=145.8
Q ss_pred cccccceeeEEEeeecccCcccceeeeeeeeee---------------eeeecceeeeeecCCCCCCeeheeHHHHhcCH
Q 028297 3 SEETRGYRAFLKQSVWCLTSQYQVSFSFFFLFF---------------CFVFSSWSFFFFQIWWAAGIMFQDITTLLLDH 67 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~~ 67 (211)
.|+|||+|||||||++.| +|+++||++. ++||++|++|++...++++++.+.+++++...
T Consensus 31 ~~~v~g~~v~ii~s~~~p-----~nd~l~ell~~~~a~r~~~a~~i~~ViPYl~YaRQDr~~~~~e~isak~va~lL~~~ 105 (304)
T PRK03092 31 EESVRGCDAFVLQSHTAP-----INKWLMEQLIMIDALKRASAKRITVVLPFYPYARQDKKHRGREPISARLVADLFKTA 105 (304)
T ss_pred CCCCCCCEEEEEeCCCCC-----CcHHHHHHHHHHHHHHHcCCCeEEEEEecccccccccccCCCCCccHHHHHHHHHhc
Confidence 379999999999999866 8999999843 79999999999999899999999999998642
Q ss_pred HHHH----------------------HHHHHHHHHHhhc---CCcEEEEecCCccchHHHHHHHhC-CCeEEeecCCCCC
Q 028297 68 KAFK----------------------DTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLP 121 (211)
Q Consensus 68 ~~~~----------------------~~~~~la~~i~~~---~~d~Iv~i~~gG~~~A~~lA~~L~-~p~~~~~k~~~~~ 121 (211)
+..+ .....+++++.+. +..+||+|+.||+.+|..+|+.|+ .|+..++|.+...
T Consensus 106 g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~la~~i~~~~~~~~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~ 185 (304)
T PRK03092 106 GADRIMTVDLHTAQIQGFFDGPVDHLFAMPLLADYVRDKYDLDNVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPT 185 (304)
T ss_pred CCCeEEEEecChHHHHhhcCCCeeeEechHHHHHHHHHhcCCCCcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccC
Confidence 1111 1233444555332 234999999999999999999999 9998887765321
Q ss_pred CceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCCe
Q 028297 122 GEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPL 199 (211)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~l 199 (211)
.... .....+ .+. .+||+|+|||||++||+|+.++++.|++.||+++.++++|+.++ +.++|.+.++
T Consensus 186 ~~~~---------~~~~~~-~~d-v~gr~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~~a~~~l~~~~~ 254 (304)
T PRK03092 186 VPNQ---------VVANRV-VGD-VEGRTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSGPAAERLKNCGA 254 (304)
T ss_pred CCCc---------eEEEec-CcC-CCCCEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCChHHHHHHHHCCC
Confidence 1000 001111 234 49999999999999999999999999999999999999999986 7788876566
Q ss_pred EEEEcccc
Q 028297 200 YILVEPRL 207 (211)
Q Consensus 200 ~sl~~~~~ 207 (211)
..++.-+.
T Consensus 255 ~~i~~t~t 262 (304)
T PRK03092 255 REVVVTDT 262 (304)
T ss_pred CEEEEeee
Confidence 66665443
No 10
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=99.96 E-value=1.1e-28 Score=197.38 Aligned_cols=163 Identities=53% Similarity=0.913 Sum_probs=142.3
Q ss_pred eeecCCCCCCeeheeHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCce
Q 028297 45 FFFQIWWAAGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEV 124 (211)
Q Consensus 45 ~~~~~~~~~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~ 124 (211)
...|.||.+++.+.|+++++.+|+..+.+++.+++.+++.++|+|++++.||+++|..+|..|++|+..++|.++.++..
T Consensus 11 ~~~~~~~~~~~~~~d~~~l~~~p~~~~~~~~~la~~~~~~~~d~Ivgv~~~Gi~~a~~la~~l~~p~~~~rk~~~~~~~~ 90 (175)
T PRK02304 11 RTIPDFPKPGILFRDITPLLADPEAFREVIDALVERYKDADIDKIVGIEARGFIFGAALAYKLGIGFVPVRKPGKLPRET 90 (175)
T ss_pred ccCCCCCCCCcEEEeChhHhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEEcCCCCCCce
Confidence 45789999999999999999999999999999999998767899999999999999999999999999888877655554
Q ss_pred eeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCCeEEE
Q 028297 125 ISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYIL 202 (211)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~l~sl 202 (211)
.+..++..++.+.+.+..+...+|++||||||++|||+|+.++++.|+++||++++++|++++.+ |.+++.++|++||
T Consensus 91 ~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~Ga~~v~v~vl~~~~~~~g~~~l~~~~~~sl 170 (175)
T PRK02304 91 ISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGTLEAAIKLLERLGAEVVGAAFVIELPDLGGREKLEGYPVKSL 170 (175)
T ss_pred EeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHHHHHHHHHHHHcCCEEEEEEEEEEcccccchhhcCCCceEEE
Confidence 44455555555566654444569999999999999999999999999999999999999999986 7888889999999
Q ss_pred Ecccc
Q 028297 203 VEPRL 207 (211)
Q Consensus 203 ~~~~~ 207 (211)
++++.
T Consensus 171 ~~~~~ 175 (175)
T PRK02304 171 VKFDG 175 (175)
T ss_pred EEeCC
Confidence 99863
No 11
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.96 E-value=1.6e-30 Score=225.81 Aligned_cols=186 Identities=20% Similarity=0.233 Sum_probs=146.2
Q ss_pred cccccceeeEEEeeecccCcccceeeeeeeeee---------------eeeecceeeeeecCCCCCCeeheeHHHHhcCH
Q 028297 3 SEETRGYRAFLKQSVWCLTSQYQVSFSFFFLFF---------------CFVFSSWSFFFFQIWWAAGIMFQDITTLLLDH 67 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~~ 67 (211)
.|+|||+|||||||++.| +|+++||++. ++||.+|++|++...++++++.+.+++++...
T Consensus 51 ~~~v~g~dV~ii~s~~~~-----~nd~l~eLll~~~alr~~~a~~i~lViPYl~YaRQDr~~~~ge~isak~~a~lL~~~ 125 (323)
T PRK02458 51 EESVRGDDIYIIQSTSFP-----VNDHLWELLIMIDACKRASANTVNVVLPYFGYARQDRIAKPREPITAKLVANMLVKA 125 (323)
T ss_pred cCCcCCCeEEEEecCCCC-----CchHHHHHHHHHHHHHHcCCceEEEEEeccccchhhcccCCCCCchHHHHHHHHhhc
Confidence 478999999999999755 7999999843 79999999999998899999999999998653
Q ss_pred HHHH-H---------------------HHHHHHHHHhhc----CCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCC
Q 028297 68 KAFK-D---------------------TVDIFVDRYRDM----GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP 121 (211)
Q Consensus 68 ~~~~-~---------------------~~~~la~~i~~~----~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~ 121 (211)
+..+ . ....+++++.+. +..+|++|+.||..+|..+|+.|++|+..+++++...
T Consensus 126 g~d~vitvD~H~~~i~~~F~~p~~nl~~~p~~~~~l~~~~~~~~~~vvV~pd~Ga~~~A~~la~~L~~~~~~~~~~r~~~ 205 (323)
T PRK02458 126 GVDRVLTLDLHAVQVQGFFDIPVDNLFTVPLFAKHYCKKGLSGSDVVVVSPKNSGIKRARSLAEYLDAPIAIIDYAQDDS 205 (323)
T ss_pred CCCeEEEEecCcHHhhccccCCceEEEEHHHHHHHHHHhCCCCCceEEEEECCChHHHHHHHHHHhCCCEEEEEEecCCC
Confidence 2111 1 122334444332 2248999999999999999999999998777544211
Q ss_pred CceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCCe
Q 028297 122 GEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPL 199 (211)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~l 199 (211)
.. . ...+ .+. .+||+|+|||||++||+|+.++++.|+++||++|+++++|+.++ +.++|.+.++
T Consensus 206 ~~-----------~-~~~i-~gd-V~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgif~~~a~~~l~~s~i 271 (323)
T PRK02458 206 ER-----------E-EGYI-IGD-VAGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLFAGGAAEVLENAPI 271 (323)
T ss_pred cc-----------e-eecc-ccc-cCCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEEEEChhcCchHHHHHhhCCC
Confidence 10 0 1111 244 49999999999999999999999999999999999999999987 7778887778
Q ss_pred EEEEcccc
Q 028297 200 YILVEPRL 207 (211)
Q Consensus 200 ~sl~~~~~ 207 (211)
..+++-+-
T Consensus 272 ~~iv~TdT 279 (323)
T PRK02458 272 KEILVTDS 279 (323)
T ss_pred CEEEEECC
Confidence 88776554
No 12
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.96 E-value=2.1e-29 Score=215.75 Aligned_cols=186 Identities=17% Similarity=0.213 Sum_probs=144.6
Q ss_pred cccccceeeEEEeeecccCcccceeeeeeeeee---------------eeeecceeeeeecCCCCCCeeheeHHHHhcCH
Q 028297 3 SEETRGYRAFLKQSVWCLTSQYQVSFSFFFLFF---------------CFVFSSWSFFFFQIWWAAGIMFQDITTLLLDH 67 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~~ 67 (211)
.|+|||+||||+||+. | +|++|||++. ++||.+|++|++...++++++.+.+++++...
T Consensus 41 ~~~v~g~~v~i~~~~~-~-----~~d~l~ell~~~~alr~~ga~~i~~v~PY~~YaRqDr~~~~ge~isak~~a~ll~~~ 114 (285)
T PRK00934 41 LGEIDGEDVVIISTTY-P-----QDENLVELLLLIDALRDEGAKSITLVIPYLGYARQDKRFKPGEPISARAIAKIISAY 114 (285)
T ss_pred CCCcCCCEEEEEeCCC-C-----CcHHHHHHHHHHHHHHHcCCCeEEEEecCCcccccccccCCCCCccHHHHHHHHHHh
Confidence 3799999999999975 4 7999999843 79999999999999999999999999987531
Q ss_pred H---------------------HHHHHHHHHHHHHhhc-CCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCcee
Q 028297 68 K---------------------AFKDTVDIFVDRYRDM-GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVI 125 (211)
Q Consensus 68 ~---------------------~~~~~~~~la~~i~~~-~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~ 125 (211)
. ..-..+..+++++... +.++|++|+.||+.+|..+|+.+++|+..++|.+......
T Consensus 115 ~d~vitvD~H~~~~~~~f~~~~~~l~a~~~la~~i~~~~~~~vvv~pd~Ga~~~a~~lA~~l~~~~~~i~k~r~~~~~~- 193 (285)
T PRK00934 115 YDRIITINIHEPSILEFFPIPFINLDAAPLIAEYIGDKLDDPLVLAPDKGALELAKEAAEILGCEYDYLEKTRISPTEV- 193 (285)
T ss_pred cCEEEEEcCChHHHcCcCCCcEeEeecHHHHHHHHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEEEEecCCCeE-
Confidence 1 0012344555555331 3359999999999999999999999998887765322211
Q ss_pred eeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCCeEEEE
Q 028297 126 SEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYILV 203 (211)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~l~sl~ 203 (211)
.+...... .+||+|||||||++||+|+.++++.|+++||+++.++++|+.++ +.+++.+..+..++
T Consensus 194 -----------~~~~~~~~-v~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~~H~i~~~~a~~~l~~~~i~~i~ 261 (285)
T PRK00934 194 -----------EIAPKNLD-VKGKDVLIVDDIISTGGTMATAIKILKEQGAKKVYVACVHPVLVGDAILKLYNAGVDEII 261 (285)
T ss_pred -----------EEeccccc-cCCCEEEEEcCccccHHHHHHHHHHHHHCCCCEEEEEEEeeccCcHHHHHHHhCCCCEEE
Confidence 11111123 48999999999999999999999999999999999999999876 77888766677766
Q ss_pred cccc
Q 028297 204 EPRL 207 (211)
Q Consensus 204 ~~~~ 207 (211)
+.+.
T Consensus 262 ~tnt 265 (285)
T PRK00934 262 VTDT 265 (285)
T ss_pred EcCC
Confidence 5543
No 13
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=99.96 E-value=4.8e-28 Score=192.74 Aligned_cols=162 Identities=46% Similarity=0.834 Sum_probs=140.0
Q ss_pred eeeecCCCCCCeeheeHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCc
Q 028297 44 FFFFQIWWAAGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGE 123 (211)
Q Consensus 44 ~~~~~~~~~~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~ 123 (211)
..+.++||.+++.+.|++.++.+|+..+.+++.+++++.+.++|+|++++.||+++|..+|..|++|+..++|+++.++.
T Consensus 5 ~~~~~~~~~~~~~~~d~~~~l~~p~~~~~~~~~la~~i~~~~~d~ivgi~~~G~~~A~~la~~L~~~~~~i~k~~~~~~~ 84 (169)
T TIGR01090 5 IRSIPDFPKKGILFRDITPLLNNPELFRFLIDLLVERYKDANIDYIVGPEARGFIFGAALAYKLGVGFVPVRKPGKLPGE 84 (169)
T ss_pred cccCCCCCCCCceeEeChhhhcCHHHHHHHHHHHHHHhccCCCCEEEeehhccHHHHHHHHHHHCCCEEEEEeCCCCCCc
Confidence 45689999999999999999999999999999999999877889999999999999999999999999888877665555
Q ss_pred eeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCC-CCeE
Q 028297 124 VISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDG-KPLY 200 (211)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~-~~l~ 200 (211)
..+..++..++.+.+++......+||+|||||||+|||+|+.++++.|+++||++++++++.++.+ |.+.+.+ +|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~Ga~~v~~~~l~~~~~~~g~~~i~~~~~~~ 164 (169)
T TIGR01090 85 TISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTAEATDELIRKLGGEVVEAAFLIELKDLNGRAKLEPNVPVF 164 (169)
T ss_pred eeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHHHHHHHHHHHcCCEEEEEEEEEEccccChHHHhccCCceE
Confidence 555555555655556654444469999999999999999999999999999999999999999874 7778854 8999
Q ss_pred EEEcc
Q 028297 201 ILVEP 205 (211)
Q Consensus 201 sl~~~ 205 (211)
||+++
T Consensus 165 sl~~~ 169 (169)
T TIGR01090 165 SLLEY 169 (169)
T ss_pred EEEeC
Confidence 99864
No 14
>KOG1448 consensus Ribose-phosphate pyrophosphokinase [Nucleotide transport and metabolism; Amino acid transport and metabolism]
Probab=99.96 E-value=1.1e-30 Score=218.85 Aligned_cols=180 Identities=23% Similarity=0.229 Sum_probs=149.3
Q ss_pred cccccceeeEEEeeecccCcccceeeeeeeeee---------------eeeecceeeeeecCCCCCCeeheeHHHHhcCH
Q 028297 3 SEETRGYRAFLKQSVWCLTSQYQVSFSFFFLFF---------------CFVFSSWSFFFFQIWWAAGIMFQDITTLLLDH 67 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~~ 67 (211)
-|||||+|||++||.+.| +|+++|||++ ++||++|++|+.++..|.+++.+.++|++...
T Consensus 45 ~esvR~~dV~iiqsgsg~-----ind~lmELLI~I~ac~~asa~~vTaViP~Fpyarq~~k~~~r~~i~aklVanlls~a 119 (316)
T KOG1448|consen 45 GESVRGEDVYIIQSGSGP-----INDNLMELLIMINACKRASASRVTAVIPYFPYARQDKKDKSRAPILAKLVANLLSSA 119 (316)
T ss_pred ccccccCcEEEeccCCCc-----chHHHHHHHHHHHhcchhhhheeEEeccCCccccchhhhhhhhhHHHHHHHhhhhcc
Confidence 489999999999999865 9999999844 79999999999999999999999999999988
Q ss_pred HHHH-HHHHHHHHHHhh-------------------------cCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCC
Q 028297 68 KAFK-DTVDIFVDRYRD-------------------------MGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP 121 (211)
Q Consensus 68 ~~~~-~~~~~la~~i~~-------------------------~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~ 121 (211)
+..+ .++++|+.|++. ++.-+||+|+.||..++..+|+.|+..+..+.|.+...
T Consensus 120 G~dhvItmDlHa~Q~qgfF~ipVdnly~~p~~l~~ir~~~~~~~~~vivSPdaGgaKR~~s~ad~l~~~fali~ker~k~ 199 (316)
T KOG1448|consen 120 GADHVITMDLHASQIQGFFDIPVDNLYAEPAVLNYIRENIPDSENAVIVSPDAGGAKRVTSLADRLNLDFALIHKERRKA 199 (316)
T ss_pred CCceEEEecccchhhCceeeccchhhccchHHHHHHHhhCCCccceEEECCCcchhhhhHHHHHhhcchhhhhhhhhhcc
Confidence 8666 777777776442 12347889999999999999999999887766555433
Q ss_pred CceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCCe
Q 028297 122 GEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPL 199 (211)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~l 199 (211)
+++. ..+. ..|++ +||.++||||+++||+|+..|++.|.++||++|+++++|+.++ +.++++...+
T Consensus 200 ~~v~----------~~m~-LVGDv-~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVfs~~a~er~~~s~~ 267 (316)
T KOG1448|consen 200 NEVD----------IRMV-LVGDV-KGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVFSGPAIERLNESAL 267 (316)
T ss_pred cccc----------eEEE-EEecc-CCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceeccccHHHHhhhccc
Confidence 2221 0222 34675 9999999999999999999999999999999999999999998 7888864333
No 15
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=99.96 E-value=1.9e-29 Score=222.47 Aligned_cols=195 Identities=17% Similarity=0.126 Sum_probs=141.8
Q ss_pred cccccceeeEEEeeeccc--C-------cccceeeeeeeeee--------------eeeecceeeeeecCCCCCCeehee
Q 028297 3 SEETRGYRAFLKQSVWCL--T-------SQYQVSFSFFFLFF--------------CFVFSSWSFFFFQIWWAAGIMFQD 59 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~~d 59 (211)
.|+|||+|||||||++.- | ...++|++||||+. ++||++|++|++. .++++++.+.
T Consensus 72 ~~~Vrg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalragA~rIt~ViPY~~YaRQDr~-~~~e~itak~ 150 (382)
T PRK06827 72 LESVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIRGKARRITVIMPFLYESRQHKR-KGRESLDCAL 150 (382)
T ss_pred CCCCCCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHhcCCCeEEEEeecccccccccc-cCCCCccHHH
Confidence 379999999999998620 0 00138999999733 7999999999998 6899999999
Q ss_pred HHHHhcCHHHHH-H----------------------HHHHHHHHHhhc--------CCcEEEEecCCccchHHHHHHHhC
Q 028297 60 ITTLLLDHKAFK-D----------------------TVDIFVDRYRDM--------GISVVAGIEARGFVFGPSIALAIG 108 (211)
Q Consensus 60 ~~~l~~~~~~~~-~----------------------~~~~la~~i~~~--------~~d~Iv~i~~gG~~~A~~lA~~L~ 108 (211)
+++++...+..+ . ....+++++.+. +..+||+|+.||..+|..+|..||
T Consensus 151 vA~lL~~~G~d~vitvDlHs~~i~~~F~~~pvdnl~a~~~l~~~i~~~i~~l~~d~~~~VVVsPD~Gg~~rA~~~A~~Lg 230 (382)
T PRK06827 151 ALQELEELGVDNIITFDAHDPRIENAIPLMGFENLYPSYQIIKALLKNEKDLEIDKDHLMVISPDTGAMDRAKYYASVLG 230 (382)
T ss_pred HHHHHHHcCCCeEEEecCChHHhcccCCCCCcCCcCchHHHHHHHHHhcccccccCCCcEEEEECccchHHHHHHHHHhC
Confidence 998885421111 1 111223333211 346899999999999999999999
Q ss_pred CCeEEeecCCCCCCceeeeeeeeecCcee-EEE-ecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEe
Q 028297 109 AKFVPLRKPNKLPGEVISEAYVLEYGTDR-LEM-HVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVG 186 (211)
Q Consensus 109 ~p~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~ 186 (211)
+|+.+++|+|....... +.+. ... ..+...+||+|||||||++||+|+.++++.|+++||+.|+++++|+
T Consensus 231 ~~~ai~~K~R~~~~~~~--------g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~ 302 (382)
T PRK06827 231 VDLGLFYKRRDYSRVVN--------GRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFG 302 (382)
T ss_pred CCEEEEEcccCCccccc--------CCCceEEEecCCcccCCCEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEee
Confidence 99999888764322110 1111 111 1242359999999999999999999999999999999999999999
Q ss_pred Cch-hhcccCC----CCeEEEEccc
Q 028297 187 LPE-GQRRLDG----KPLYILVEPR 206 (211)
Q Consensus 187 ~~~-~~~~l~~----~~l~sl~~~~ 206 (211)
.++ +.++|.. .++..+++-+
T Consensus 303 vf~~a~~~l~~~~~~g~i~~iv~Td 327 (382)
T PRK06827 303 FFTNGLEKFDKAYEEGYFDRIIGTN 327 (382)
T ss_pred cChHHHHHHHhhcccCCCCEEEEeC
Confidence 976 7777642 2466666544
No 16
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.96 E-value=1.1e-29 Score=220.92 Aligned_cols=187 Identities=19% Similarity=0.237 Sum_probs=146.5
Q ss_pred cccccceeeEEEeeecccCcccceeeeeeeeee---------------eeeecceeeeeecCCCCCCeeheeHHHHhcCH
Q 028297 3 SEETRGYRAFLKQSVWCLTSQYQVSFSFFFLFF---------------CFVFSSWSFFFFQIWWAAGIMFQDITTLLLDH 67 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~~ 67 (211)
.|+|||+|||||||++.| +|++|||++. ++||.+|++|++...++++++.+.+++++...
T Consensus 63 ~~~vrg~~V~ivqs~~~p-----~nd~l~eLll~~~alr~~ga~ri~~ViPYl~YaRQDr~~~~~e~isak~vA~lL~~~ 137 (330)
T PRK02812 63 QESIRGCDVYLIQPTCAP-----VNDHLMELLIMVDACRRASARQITAVIPYYGYARADRKTAGRESITAKLVANLITKA 137 (330)
T ss_pred CCCCCCCEEEEECCCCCC-----ccHHHHHHHHHHHHHHHhCCceEEEEEecccccccccccCCCCCchHHHHHHHHHhc
Confidence 479999999999998766 8999999843 79999999999999999999999999888643
Q ss_pred HHHH----------------------HHHHHHHHHHhhc--CCcEEEEecCCccchHHHHHHHhC-CCeEEeecCCCCCC
Q 028297 68 KAFK----------------------DTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPG 122 (211)
Q Consensus 68 ~~~~----------------------~~~~~la~~i~~~--~~d~Iv~i~~gG~~~A~~lA~~L~-~p~~~~~k~~~~~~ 122 (211)
+..+ .....+++++.+. +-.+|++|+.||..+|..+|+.|+ .|+..+.|++...+
T Consensus 138 g~d~vitvDlH~~~~~~fF~ipv~nl~~~~~l~~~i~~~~~~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~ 217 (330)
T PRK02812 138 GADRVLAMDLHSAQIQGYFDIPCDHVYGSPVLLDYLASKNLEDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHN 217 (330)
T ss_pred CCCEEEEEECCchHHcCccCCCceeeeChHHHHHHHHhcCCCCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCc
Confidence 2111 1223334444332 335899999999999999999995 89988887664222
Q ss_pred ceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCCeE
Q 028297 123 EVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLY 200 (211)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~l~ 200 (211)
.. ..+.+ .+. .+||+|+||||+++||+|+.++++.|+++||+.|+++++|+.++ +.++|.+.++.
T Consensus 218 ~~-----------~~~~~-~~~-v~g~~viiVDDii~TG~T~~~a~~~L~~~Ga~~v~~~~tH~v~s~~a~~~l~~~~id 284 (330)
T PRK02812 218 VA-----------EVLNV-IGD-VKGKTAILVDDMIDTGGTICEGARLLRKEGAKQVYACATHAVFSPPAIERLSSGLFE 284 (330)
T ss_pred ee-----------eeEec-ccc-CCCCEEEEEccccCcHHHHHHHHHHHhccCCCeEEEEEEcccCChHHHHHHhhCCCC
Confidence 11 12222 234 49999999999999999999999999999999999999999987 77888766677
Q ss_pred EEEcccc
Q 028297 201 ILVEPRL 207 (211)
Q Consensus 201 sl~~~~~ 207 (211)
.++..+.
T Consensus 285 ~iv~tnt 291 (330)
T PRK02812 285 EVIVTNT 291 (330)
T ss_pred EEEEeCC
Confidence 7766543
No 17
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.96 E-value=3.5e-29 Score=216.43 Aligned_cols=186 Identities=19% Similarity=0.226 Sum_probs=146.0
Q ss_pred cccccceeeEEEeeecccCcccceeeeeeeeee---------------eeeecceeeeeecCCCCCCeeheeHHHHhcCH
Q 028297 3 SEETRGYRAFLKQSVWCLTSQYQVSFSFFFLFF---------------CFVFSSWSFFFFQIWWAAGIMFQDITTLLLDH 67 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~~ 67 (211)
.|+|||+||||+||++.| +|+++||++. ++||.+|++|++...++++++.+.+++++...
T Consensus 42 ~~~v~g~~V~ii~s~~~~-----~nd~l~eLll~~~alr~~ga~~i~lViPYl~YsRQDr~~~~ge~isak~~a~lL~~~ 116 (309)
T PRK01259 42 NENVRGKDVFIIQSTCAP-----TNDNLMELLIMIDALKRASAGRITAVIPYFGYARQDRKARSRVPITAKLVANLLETA 116 (309)
T ss_pred CCCCCCCEEEEECCCCCC-----CcHHHHHHHHHHHHHHHcCCceEEEEeeccccchhhhhhccCCCchHHHHHHHHhhc
Confidence 378999999999998755 7899999833 79999999999999899999999999988643
Q ss_pred HHHH----------------------HHHHHHHHHHhhc--CCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCc
Q 028297 68 KAFK----------------------DTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGE 123 (211)
Q Consensus 68 ~~~~----------------------~~~~~la~~i~~~--~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~ 123 (211)
+..+ .....+++++.+. +..+|++|+.||+.+|..+|+.||+|+..++|+++.++.
T Consensus 117 g~d~vitvD~H~~~~~~~f~~p~~~l~~~~~l~~~i~~~~~~~~vvv~pd~Gg~~~A~~la~~Lg~~~~~~~k~r~~~~~ 196 (309)
T PRK01259 117 GADRVLTMDLHADQIQGFFDIPVDNLYGSPILLEDIKQKNLENLVVVSPDVGGVVRARALAKRLDADLAIIDKRRPRANV 196 (309)
T ss_pred CCCEEEEEcCChHHHcCcCCCCceeeeecHHHHHHHHhcCCCCcEEEEECCCcHHHHHHHHHHhCCCEEEEEeeccccee
Confidence 1111 1234455566443 457999999999999999999999999888776543322
Q ss_pred eeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCCeEE
Q 028297 124 VISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYI 201 (211)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~l~s 201 (211)
. ..+.+ .+. .+|++|+|||||++||+|+.++++.|+++|++.+.++++|+.++ +.+++....+..
T Consensus 197 ~-----------~~~~~-~~~-~~g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~~~tH~i~~~~a~~~l~~~~~~~ 263 (309)
T PRK01259 197 S-----------EVMNI-IGD-VEGRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAYATHPVLSGGAIERIENSVIDE 263 (309)
T ss_pred E-----------EEEee-ccc-CCCCEEEEEecccCcHHHHHHHHHHHHccCCCEEEEEEEeeeCChHHHHHHhcCCCCE
Confidence 1 12222 234 48999999999999999999999999999999999999999886 777776545555
Q ss_pred EEccc
Q 028297 202 LVEPR 206 (211)
Q Consensus 202 l~~~~ 206 (211)
++..+
T Consensus 264 iv~t~ 268 (309)
T PRK01259 264 LVVTD 268 (309)
T ss_pred EEEec
Confidence 55443
No 18
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.95 E-value=3e-28 Score=209.97 Aligned_cols=187 Identities=17% Similarity=0.200 Sum_probs=144.5
Q ss_pred cccccceeeEEEeeecccCcccceeeeeeeeee---------------eeeecceeeeeecCCCCCCeeheeHHHHhcCH
Q 028297 3 SEETRGYRAFLKQSVWCLTSQYQVSFSFFFLFF---------------CFVFSSWSFFFFQIWWAAGIMFQDITTLLLDH 67 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~~ 67 (211)
.|+|||+||||+||++.| +|+++||++. ++||.+|++|++...++++++.+.+++++...
T Consensus 33 ~~~v~g~~V~iv~s~~~p-----~nd~l~eLl~~~~a~r~~~a~~i~~ViPYl~YsRQDr~~~~~e~isak~va~lL~~~ 107 (302)
T PLN02369 33 QESVRGCDVFLVQPTCPP-----ANENLMELLIMIDACRRASAKRITAVIPYFGYARADRKTQGRESIAAKLVANLITEA 107 (302)
T ss_pred CCCCCCCeEEEEecCCCC-----cchHHHHHHHHHHHHHHcCCCeEEEEeecccccccccccCCCCCchHHHHHHHHHhc
Confidence 378999999999999866 7999999843 79999999999998899999999999888642
Q ss_pred HHHH----------------------HHHHHHHHHHhhc----CCcEEEEecCCccchHHHHHHHh-CCCeEEeecCCCC
Q 028297 68 KAFK----------------------DTVDIFVDRYRDM----GISVVAGIEARGFVFGPSIALAI-GAKFVPLRKPNKL 120 (211)
Q Consensus 68 ~~~~----------------------~~~~~la~~i~~~----~~d~Iv~i~~gG~~~A~~lA~~L-~~p~~~~~k~~~~ 120 (211)
+..+ .....+++++.+. +.-+|++|+.||..+|..+++.+ +.|+..++|+|..
T Consensus 108 g~d~vi~vDlHs~~i~~~F~ip~~~l~~~~~~~~~i~~~~~~~~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~ 187 (302)
T PLN02369 108 GADRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTISSPDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQG 187 (302)
T ss_pred CCCEEEEEECCchHHhhccCCceecccchHHHHHHHHHhCCCCCceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCC
Confidence 1111 1222333444332 12389999999999999999999 7999888877642
Q ss_pred CCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCC
Q 028297 121 PGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKP 198 (211)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~ 198 (211)
.+.. ..+.+ .+. .+||+|+|||||++||+|+.++++.|++.|++++.++++|..++ +.++|++..
T Consensus 188 ~~~~-----------~~~~~-~~~-v~g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~v~~~~a~~~l~~~~ 254 (302)
T PLN02369 188 HNVA-----------EVMNL-IGD-VKGKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVFSPPAIERLSSGL 254 (302)
T ss_pred ccee-----------eeEec-CCC-CCCCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEeeeeCHHHHHHHHhCC
Confidence 2211 12222 234 48999999999999999999999999999999999999998886 777887656
Q ss_pred eEEEEcccc
Q 028297 199 LYILVEPRL 207 (211)
Q Consensus 199 l~sl~~~~~ 207 (211)
+..++..+.
T Consensus 255 ~~~iv~t~t 263 (302)
T PLN02369 255 FQEVIVTNT 263 (302)
T ss_pred CCEEEEeCC
Confidence 666665543
No 19
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=99.94 E-value=3.5e-27 Score=204.29 Aligned_cols=182 Identities=15% Similarity=0.115 Sum_probs=140.3
Q ss_pred cccccceeeEEEeeecccCcccceeeeeeeeee---------------eeeecceeeeeecCCCCCCeeheeHHHHhcC-
Q 028297 3 SEETRGYRAFLKQSVWCLTSQYQVSFSFFFLFF---------------CFVFSSWSFFFFQIWWAAGIMFQDITTLLLD- 66 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~- 66 (211)
.|+|||+||||+||++.| +++||++. ++||++|++|++...|+++++.+.+++++..
T Consensus 61 ~~~vrg~~V~ivqs~~~p-------d~lmELLl~~dAlr~~ga~~i~~ViPY~~YaRQDr~~~~ge~isak~vA~ll~~~ 133 (326)
T PLN02297 61 AHGIRGQHVAFLASFSSP-------AVIFEQLSVIYALPKLFVASFTLVLPFFPTGTSERVEREGDVATAFTLARILSNI 133 (326)
T ss_pred CCCcCCCeEEEECCCCCC-------hHHHHHHHHHHHHHHcCCCEEEEEeeCChhhcCCCCCCCCCCchHHHHHHHHhcc
Confidence 379999999999998732 67999844 7999999999999999999999999988765
Q ss_pred ----H-------------HH--------H---HHHHHHHHHHHhhc---CCcEEEEecCCccchHHHHHHHhCCCeEEee
Q 028297 67 ----H-------------KA--------F---KDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGAKFVPLR 115 (211)
Q Consensus 67 ----~-------------~~--------~---~~~~~~la~~i~~~---~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~ 115 (211)
. .. . ......+++++++. +-.+||+|+.||..++..++ +++|+..+.
T Consensus 134 ~~~~~g~d~vitvDlH~~~~~~fF~~~~~~l~l~a~~~l~~~i~~~~~~~~~vvVsPD~Ga~~ra~~~a--~~~~~~~~~ 211 (326)
T PLN02297 134 PISRGGPTSLVIFDIHALQERFYFGDNVLPCFESGIPLLKKRLQQLPDSDNIVIAFPDDGAWKRFHKQF--EHFPMVVCT 211 (326)
T ss_pred cccccCCCEEEEEeCCChHHCCccCCcccchhhccHHHHHHHHHhccccCCcEEEecCccHHHHHHHHc--CCCCEEEEE
Confidence 1 00 0 02345566666443 23589999999998877766 678999888
Q ss_pred cCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcc
Q 028297 116 KPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRR 193 (211)
Q Consensus 116 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~ 193 (211)
|++. +... ......+. .+||+|+|||||++||+|+.++++.|++.|++.|+++++|+.++ +.++
T Consensus 212 K~R~--g~~~-----------~~~~~~~d-v~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga~~V~~~~THglfs~~a~~~ 277 (326)
T PLN02297 212 KVRE--GDKR-----------IVRIKEGN-PAGRHVVIVDDLVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFPNESWER 277 (326)
T ss_pred eEEC--CCce-----------EEEecccc-cCCCeEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEECcccChhHHHH
Confidence 7763 1110 11111234 59999999999999999999999999999999999999999997 7777
Q ss_pred cCC------CCeEEEEcccc
Q 028297 194 LDG------KPLYILVEPRL 207 (211)
Q Consensus 194 l~~------~~l~sl~~~~~ 207 (211)
|.. .++..++.-+-
T Consensus 278 l~~~~~~~~~~i~~iv~TdT 297 (326)
T PLN02297 278 FTHDNGGPEAGFAYFWITDS 297 (326)
T ss_pred HHhcccccccCcCEEEEcCC
Confidence 764 36777765543
No 20
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=99.94 E-value=1.1e-27 Score=207.33 Aligned_cols=186 Identities=21% Similarity=0.245 Sum_probs=143.8
Q ss_pred cccccceeeEEE-eeecccCcccceeeeeeeeee---------------eeeecceeeeeecCCCCCCeeheeHHHHhcC
Q 028297 3 SEETRGYRAFLK-QSVWCLTSQYQVSFSFFFLFF---------------CFVFSSWSFFFFQIWWAAGIMFQDITTLLLD 66 (211)
Q Consensus 3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~ 66 (211)
.|+|||+||||+ ||+..| +|+++||++. ++||.+|++|++...+.++++.+.+++++..
T Consensus 42 ~~~v~g~~v~iv~~s~~~~-----~~~~l~el~~~~~a~r~~ga~~i~~v~PYl~Y~RqDr~~~~ge~is~~~~a~ll~~ 116 (308)
T TIGR01251 42 NESVRGKDVFIIQQSTSAP-----VNDNLMELLIMIDALKRASAKSITAVIPYYGYARQDKKFKSREPISAKLVANLLET 116 (308)
T ss_pred CCCCCCCeEEEEeCCCCCC-----ccHHHHHHHHHHHHHHHcCCCeEEEEEEecccchhccccCCCCCchHHHHHHHHHH
Confidence 378999999999 998755 7999999843 7999999999999889999999999988864
Q ss_pred HHHH----------------------HHHHHHHHHHHhhc--CCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCC-C
Q 028297 67 HKAF----------------------KDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKL-P 121 (211)
Q Consensus 67 ~~~~----------------------~~~~~~la~~i~~~--~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~-~ 121 (211)
.+.. -.....+++++.+. +.++|++|+.||+.+|..+|+.||+|+..++|.+.. .
T Consensus 117 ~g~d~vit~DlHs~~~~~~f~ip~~~l~a~~~l~~~i~~~~~~~~viv~pd~g~~~~A~~lA~~Lg~~~~~i~k~r~~~~ 196 (308)
T TIGR01251 117 AGADRVLTVDLHSPQIQGFFDVPVDNLYASPVLAEYLKKKILDNPVVVSPDAGGVERAKKVADALGCPLAIIDKRRISAT 196 (308)
T ss_pred cCCCEEEEecCChHHhcCcCCCceecccCHHHHHHHHHhhCCCCCEEEEECCchHHHHHHHHHHhCCCEEEEEEEecCCC
Confidence 2111 12233445555433 457999999999999999999999999888776642 1
Q ss_pred CceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCCe
Q 028297 122 GEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPL 199 (211)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~l 199 (211)
+.. ......+. .+||+|+||||+++||+|+.++++.|+++||++++++++|+.+. +.+++....+
T Consensus 197 ~~~------------~~~~~~~~-v~g~~vliVDDii~tG~Tl~~a~~~l~~~ga~~v~~~~th~v~~~~a~~~l~~~~~ 263 (308)
T TIGR01251 197 NEV------------EVMNLVGD-VEGKDVVIVDDIIDTGGTIAKAAEILKSAGAKRVIAAATHGVFSGPAIERIANAGV 263 (308)
T ss_pred CEE------------EEEecccc-cCCCEEEEEccccCCHHHHHHHHHHHHhcCCCEEEEEEEeeecCcHHHHHHHhCCC
Confidence 111 11111233 48999999999999999999999999999999999999998665 6677765556
Q ss_pred EEEEccc
Q 028297 200 YILVEPR 206 (211)
Q Consensus 200 ~sl~~~~ 206 (211)
..+++.+
T Consensus 264 ~~iv~td 270 (308)
T TIGR01251 264 EEVIVTN 270 (308)
T ss_pred CEEEEeC
Confidence 6666544
No 21
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=99.94 E-value=5.8e-26 Score=183.23 Aligned_cols=146 Identities=24% Similarity=0.342 Sum_probs=129.5
Q ss_pred CCCCCeeheeHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCceeeeee
Q 028297 50 WWAAGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAY 129 (211)
Q Consensus 50 ~~~~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~ 129 (211)
..+++..|.|++.++.+|..++.+++.+++.+++.++|.|++++.+|+++|..+|..+|+|++++||..+..+.
T Consensus 38 SG~~s~~yiD~~~~~~~p~~~~~i~~~la~~~~~~~~d~I~g~~~~GiplA~~vA~~l~~p~v~vRK~~k~~g~------ 111 (187)
T PRK13810 38 SGKKSKYYIDIKKASTDPKTLKLIARQAALRIKEMDVDTVAGVELGGVPLATAVSLETGLPLLIVRKSVKDYGT------ 111 (187)
T ss_pred CCCcCCEEEECchhcCCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEecCCCccCC------
Confidence 45566789999999999999999999999999877899999999999999999999999999999987653322
Q ss_pred eeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch-hhcccC--CCCeEEEEccc
Q 028297 130 VLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-GQRRLD--GKPLYILVEPR 206 (211)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~-~~~~l~--~~~l~sl~~~~ 206 (211)
..+. .+.+.+|++|+||||++|||+|+.+++++|+++|++++++++++++.+ ++++|+ |+|++||++++
T Consensus 112 ------~~~~--~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~~v~vlvdr~~g~~~~l~~~gi~~~sl~~~~ 183 (187)
T PRK13810 112 ------GSRF--VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIKYVITVVDREEGAEENLKEADVELVPLVSAS 183 (187)
T ss_pred ------CceE--EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEEEEEEEEECCcChHHHHHHcCCcEEEEEEHH
Confidence 1222 255569999999999999999999999999999999999999999988 788886 89999999999
Q ss_pred ccc
Q 028297 207 LSV 209 (211)
Q Consensus 207 ~~~ 209 (211)
|++
T Consensus 184 ~~~ 186 (187)
T PRK13810 184 DLL 186 (187)
T ss_pred Hhh
Confidence 886
No 22
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=99.94 E-value=1.6e-25 Score=179.65 Aligned_cols=163 Identities=45% Similarity=0.749 Sum_probs=146.3
Q ss_pred eeeecCCCCCCeeheeHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCc
Q 028297 44 FFFFQIWWAAGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGE 123 (211)
Q Consensus 44 ~~~~~~~~~~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~ 123 (211)
.+..+.||..++.|.+....+.++.......+.+++++...++|.|++++.+|+++|..+|..||+|++.+||.++.+..
T Consensus 12 i~~~~~~~~~g~~f~d~~~~~~~~~~~~~~i~~~~~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~vRK~~kl~~~ 91 (179)
T COG0503 12 IREIPDFPKGGILFVDITLLLGDPELLAKLIDELAERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVPVRKKGKLPEE 91 (179)
T ss_pred HhhcccccCCCceEEecchhhcCcHHHHHHHHHHHHHhcccCCCEEEEEccccchhHHHHHHHhCCCEEEEEecCCCCCc
Confidence 34678999999999999999999999998888999999888899999999999999999999999999999999998887
Q ss_pred eeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccC--CCCe
Q 028297 124 VISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLD--GKPL 199 (211)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~--~~~l 199 (211)
.....+..+++...+++..+.+.+|++||||||++.||+|+.+..++++++|+++++++++++.++ ++.++. +.|+
T Consensus 92 ~~~~~~~~~~~~~~l~~~~~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg~~~~ie~~~~~gr~~l~~~~~~v 171 (179)
T COG0503 92 SVVETYYLEYGSETLELHKDALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVVGAAFVIELGELDGRKKLEDDGLPV 171 (179)
T ss_pred ceeEEEEEeccceEEEEEhhhCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEEEEEEEEEcCccccchhhccCCceE
Confidence 777777777776678877777779999999999999999999999999999999999999999987 666666 4888
Q ss_pred EEEEccc
Q 028297 200 YILVEPR 206 (211)
Q Consensus 200 ~sl~~~~ 206 (211)
++|..+.
T Consensus 172 ~~l~~~~ 178 (179)
T COG0503 172 FSLVRIV 178 (179)
T ss_pred EEEEecc
Confidence 8887654
No 23
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=99.94 E-value=2e-25 Score=182.61 Aligned_cols=149 Identities=18% Similarity=0.242 Sum_probs=129.6
Q ss_pred CCCCeeheeHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCceeeeeee
Q 028297 51 WAAGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYV 130 (211)
Q Consensus 51 ~~~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~ 130 (211)
.+++-.|.|++.++.+|..++.+++.+++.+.+.++|+|++|+.+|+++|..+|..+++|+.+.||..+.++...
T Consensus 33 G~~S~~y~D~~~i~~~p~~l~~i~~~l~~~~~~~~~d~IvG~~~~Gi~~A~~vA~~l~~p~~~~RK~~K~~G~~~----- 107 (206)
T PRK13809 33 GEETPIYVDMRLVISSPEVLQTIATLIWRLRPSFNSSLLCGVPYTALTLATSISLKYNIPMVLRRKELKNVDPSD----- 107 (206)
T ss_pred cCCCCEEEEChhhccCHHHHHHHHHHHHHHhccCCCCEEEEecCccHHHHHHHHHHhCCCEEEEeCCCCCCCCcC-----
Confidence 334447999999999999999999999999877688999999999999999999999999999998877665421
Q ss_pred eecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch-hhcccC--CCCeEEEEcccc
Q 028297 131 LEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-GQRRLD--GKPLYILVEPRL 207 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~-~~~~l~--~~~l~sl~~~~~ 207 (211)
.+++ .+...+|++|+||||++|||+|+.++++.|+++|++++++++++++.. +.++++ |+|++||++++|
T Consensus 108 ------~~~~-~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v~sl~~~~~ 180 (206)
T PRK13809 108 ------AIKV-EGLFTPGQTCLVINDMVSSGKSIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKLSSVFTVPD 180 (206)
T ss_pred ------EEEE-ccccCCCCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCEEEEEEHHH
Confidence 3433 244569999999999999999999999999999999999999999876 777774 899999999999
Q ss_pred cccC
Q 028297 208 SVNY 211 (211)
Q Consensus 208 ~~~~ 211 (211)
++++
T Consensus 181 l~~~ 184 (206)
T PRK13809 181 LIKS 184 (206)
T ss_pred HHHH
Confidence 8763
No 24
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=99.93 E-value=6.8e-25 Score=177.28 Aligned_cols=151 Identities=26% Similarity=0.401 Sum_probs=124.6
Q ss_pred eeHHHHh---cCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCC--Cceeeee-eee
Q 028297 58 QDITTLL---LDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP--GEVISEA-YVL 131 (211)
Q Consensus 58 ~d~~~l~---~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~--~~~~~~~-~~~ 131 (211)
.++..++ .+|+.++.+++.+++.++..++|+|++++.+|+++|..+|..|++|++++||.++.+ +...... ++.
T Consensus 20 ~~~~~~~~~~~~P~~l~~i~~~la~~~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~~k~~~~~~~~~~~~~~~ 99 (189)
T PRK09219 20 LKVDSFLNHQVDPKLMNEIGKEFARRFKDEGITKILTIEASGIAPAVMAALALGVPVVFAKKKKSLTLTDDVYTATVYSF 99 (189)
T ss_pred EEEhhhhccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEECCCCCCCCceEEEEEeee
Confidence 3444444 899999999999999998878999999999999999999999999999999887664 3332221 111
Q ss_pred ec-CceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccC--CCCeEEEEccc
Q 028297 132 EY-GTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLD--GKPLYILVEPR 206 (211)
Q Consensus 132 ~~-~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~--~~~l~sl~~~~ 206 (211)
.. ....+++..+.+.+|++||||||+++||+|+.+++++++++||+++++++++++.. +++++. |+|++||++++
T Consensus 100 ~~~~~~~l~i~~~~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vvgv~~lvd~~~~~g~~~l~~~g~~~~sl~~~~ 179 (189)
T PRK09219 100 TKQVTSTVSVSKKFLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVAGIGIVIEKSFQDGRKLLEEKGYRVESLARIA 179 (189)
T ss_pred ccCceEEEEEEhhhCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEEEEEEEEEccCccHHHHHHhcCCcEEEEEEee
Confidence 11 22356666666679999999999999999999999999999999999999999873 777774 89999999998
Q ss_pred cc
Q 028297 207 LS 208 (211)
Q Consensus 207 ~~ 208 (211)
++
T Consensus 180 ~~ 181 (189)
T PRK09219 180 SL 181 (189)
T ss_pred ec
Confidence 75
No 25
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=99.93 E-value=9.6e-25 Score=176.76 Aligned_cols=148 Identities=22% Similarity=0.301 Sum_probs=122.9
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCC-----ceeeeeeeeecCce
Q 028297 62 TLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPG-----EVISEAYVLEYGTD 136 (211)
Q Consensus 62 ~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~-----~~~~~~~~~~~~~~ 136 (211)
+...+|+.++.+++.+++++.+.++|+|++++.+|+++|..+|.+||+|++++||.++.+. .....++.. ++..
T Consensus 27 ~~~~~p~~l~~v~~~l~~~~~~~~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK~~k~~~~~~~~~~~~~s~~~-~~~~ 105 (191)
T TIGR01744 27 NHQIDPKLMQEVGEEFARRFADDGITKIVTIEASGIAPAIMTGLKLGVPVVFARKKKPLTLTDNLLTASVHSFTK-QTTS 105 (191)
T ss_pred ccccCHHHHHHHHHHHHHHhccCCCCEEEEEccccHHHHHHHHHHHCCCEEEEEeCCCCCCCCcceEEEEEEeec-CccE
Confidence 3347999999999999999987789999999999999999999999999999998876543 111112222 3334
Q ss_pred eEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccC--CCCeEEEEccccccc
Q 028297 137 RLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLD--GKPLYILVEPRLSVN 210 (211)
Q Consensus 137 ~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~--~~~l~sl~~~~~~~~ 210 (211)
.+++..+.+.+|++||||||++|||+|+.+++++++++||+++++++++++.. ++++|+ ++|++||++++++-|
T Consensus 106 ~l~i~~~~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vvgv~~lvd~~~~~g~~~l~~~gvpv~sL~~~~~l~~ 183 (191)
T TIGR01744 106 TVAVSGEFLSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIAGIGIVIEKSFQNGRQELVELGYRVESLARIQSLEE 183 (191)
T ss_pred EEEEEHHhCCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEEEEEEEEEecCccHHHHHHhcCCcEEEEEEEeeEeC
Confidence 55655555669999999999999999999999999999999999999999873 778884 799999999987643
No 26
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=99.93 E-value=1.5e-24 Score=175.28 Aligned_cols=160 Identities=26% Similarity=0.358 Sum_probs=130.8
Q ss_pred eeecCCCCCCe--eheeHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCC
Q 028297 45 FFFQIWWAAGI--MFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPG 122 (211)
Q Consensus 45 ~~~~~~~~~~i--~~~d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~ 122 (211)
+.++.||.+++ .|.|++.++. |...+.+++.+++.+ +.++|+|++++.+|+++|..+|..+++|+...+|.+....
T Consensus 11 ~~~~~~~~~~~~~~~~D~~~~l~-P~~l~~~~~~l~~~~-~~~~D~Ivg~e~~Gi~lA~~vA~~l~~p~~~~rk~~~~~~ 88 (187)
T PRK12560 11 RVVNSGKALTTVNEFTDQLPALR-PKVLKETAKEIIKYI-DKDIDKIVTEEDKGAPLATPVSLLSGKPLAMARWYPYSLS 88 (187)
T ss_pred CccCCCCCCCcceeEEeChhhcC-HHHHHHHHHHHHHHh-CCCCCEEEEEccccHHHHHHHHHhhCCCEEEeccCCCccc
Confidence 56889999999 8999999999 999999999999988 5689999999999999999999999999999887653322
Q ss_pred ceeeeeeeeecCceeEE--EecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhccc---C
Q 028297 123 EVISEAYVLEYGTDRLE--MHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRL---D 195 (211)
Q Consensus 123 ~~~~~~~~~~~~~~~~~--~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l---~ 195 (211)
..... ...+++..++ +..+...+|++||||||+++||+|+.+++++|+++||+++++++++++.+ +++++ .
T Consensus 89 ~~~~~--~~~~~~~~~eg~~~~~~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv~v~~vvd~~~~~g~~~l~~~~ 166 (187)
T PRK12560 89 ELNYN--VVEIGSEYFEGVVYLNGIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVSDVICVIEKTQNNGRKKLFTQT 166 (187)
T ss_pred ceeEE--eeeeeccceeeeeEccCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEEecccchHHHHhhcc
Confidence 11100 0112222222 22234569999999999999999999999999999999999999999975 67777 4
Q ss_pred CCCeEEEEccccc
Q 028297 196 GKPLYILVEPRLS 208 (211)
Q Consensus 196 ~~~l~sl~~~~~~ 208 (211)
|+|+.||++++++
T Consensus 167 gv~v~sl~~~~~~ 179 (187)
T PRK12560 167 GINVKSLVKIDVK 179 (187)
T ss_pred CCcEEEEEEEEEe
Confidence 9999999999875
No 27
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=99.92 E-value=1.4e-24 Score=173.79 Aligned_cols=143 Identities=23% Similarity=0.292 Sum_probs=122.9
Q ss_pred CCeeheeHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeee
Q 028297 53 AGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLE 132 (211)
Q Consensus 53 ~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~ 132 (211)
.+-.|.|.+.+..+|...+.+++.+++.+.+ .|+|++|+.||+++|..+|..||+|+.+.||+++..+.
T Consensus 28 ~S~~yid~~~~~~~p~~~~~i~~~l~~~i~~--~d~ivg~~~ggi~lA~~lA~~l~~p~~~~rk~~k~yg~--------- 96 (176)
T PRK13812 28 TSEYYVDKYLFETDPDCLRLIAEAFADRIDE--DTKLAGVALGAVPLVAVTSVETGVPYVIARKQAKEYGT--------- 96 (176)
T ss_pred cCCEEEeCeeccCCHHHHHHHHHHHHHHhcc--CCEEEEeecchHHHHHHHHHHHCCCEEEEeccCCcCCC---------
Confidence 3336899999999999999999999999864 38999999999999999999999999999987653322
Q ss_pred cCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch-hhcccC--CCCeEEEEcccccc
Q 028297 133 YGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-GQRRLD--GKPLYILVEPRLSV 209 (211)
Q Consensus 133 ~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~-~~~~l~--~~~l~sl~~~~~~~ 209 (211)
.... .+.+.+|++||||||+++||+|+.++++.|+++|++++++++++++.+ ++++++ |+|++||++++|++
T Consensus 97 ---~~~~--~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~Ga~vv~~~vlvdr~~~~~~~l~~~g~~v~sL~~~~~~~ 171 (176)
T PRK13812 97 ---GNRI--EGRLDEGEEVVVLEDIATTGQSAVDAVEALREAGATVNRVLVVVDREEGARENLADHDVELEALVTASDLL 171 (176)
T ss_pred ---CCeE--EecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHCCCeEEEEEEEEECCcchHHHHHhcCCcEEEEEeHHHHH
Confidence 1111 144558999999999999999999999999999999999999999987 677774 89999999999987
Q ss_pred cC
Q 028297 210 NY 211 (211)
Q Consensus 210 ~~ 211 (211)
++
T Consensus 172 ~~ 173 (176)
T PRK13812 172 AD 173 (176)
T ss_pred hh
Confidence 64
No 28
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=99.92 E-value=5.5e-24 Score=179.60 Aligned_cols=151 Identities=20% Similarity=0.351 Sum_probs=130.9
Q ss_pred heeHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCC-CCceeeeeeeeecCc
Q 028297 57 FQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKL-PGEVISEAYVLEYGT 135 (211)
Q Consensus 57 ~~d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~-~~~~~~~~~~~~~~~ 135 (211)
|.++..++.+|...+.+++.++..+.+.++|+|++++.+|+++|..+|.+|++|++++||..+. +++..+.+|...+.+
T Consensus 100 ~~~~s~ll~~P~~l~~ig~~la~~~~~~~iD~VvgvetkGIpLA~avA~~L~vp~vivRK~~K~t~g~~vs~nY~sgs~~ 179 (268)
T TIGR01743 100 YLYLTDILGKPSILSKIGKILASVFAEREIDAVMTVATKGIPLAYAVASVLNVPLVIVRKDSKVTEGSTVSINYVSGSSN 179 (268)
T ss_pred eEEechhhcCHHHHHHHHHHHHHHhcCCCCCEEEEEccchHHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEcccCc
Confidence 6788899999999999999999999887899999999999999999999999999999998765 566666666443221
Q ss_pred --eeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCchhhcccCCCCeEEEEccccc
Q 028297 136 --DRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGKPLYILVEPRLS 208 (211)
Q Consensus 136 --~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~~~~~l~~~~l~sl~~~~~~ 208 (211)
..+.+..+.+.+|++||||||+++||+|+.+++++++++||+++++++++++..+.+++ +.++.||++++++
T Consensus 180 ~ie~m~l~k~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlve~~~~~~~l-~~~~~SL~~~~~~ 253 (268)
T TIGR01743 180 RIQTMSLAKRSLKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIGVLIDNEGVDEKL-VDDYMSLLTLSNI 253 (268)
T ss_pred cceEEEEehhhCCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEEEEEECCCChHHc-CCCceEEEEEeec
Confidence 25666666677999999999999999999999999999999999999999998766666 3489999998876
No 29
>PRK09213 pur operon repressor; Provisional
Probab=99.92 E-value=7.8e-24 Score=179.09 Aligned_cols=151 Identities=24% Similarity=0.408 Sum_probs=130.3
Q ss_pred heeHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCC-CCceeeeeeeeecCc
Q 028297 57 FQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKL-PGEVISEAYVLEYGT 135 (211)
Q Consensus 57 ~~d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~-~~~~~~~~~~~~~~~ 135 (211)
|.++.+++.+|...+.+++.++.++.+.++|+|++++.+|+++|..+|.+|++|++++||..+. ++.+.+.+|.....+
T Consensus 102 f~y~sdll~~P~~l~~i~~~la~~~~~~~iD~Vvtvet~GIplA~~vA~~L~vp~vivRK~~K~~~G~~vs~~y~sgs~~ 181 (271)
T PRK09213 102 YLYLSDLLGNPSILRKIGRIIASAFADKKIDAVMTVETKGIPLAYAVANYLNVPFVIVRRDSKVTEGSTVSINYVSGSSK 181 (271)
T ss_pred eEEeCcccCCHHHHHHHHHHHHHHhcccCCCEEEEEccccHHHHHHHHHHHCCCEEEEEECCCCCCCCcEEEEEEecccc
Confidence 6688889999999999999999999887899999999999999999999999999999987765 566666555443221
Q ss_pred --eeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCchhhcccCCCCeEEEEccccc
Q 028297 136 --DRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGKPLYILVEPRLS 208 (211)
Q Consensus 136 --~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~~~~~l~~~~l~sl~~~~~~ 208 (211)
..+++..+.+.+|++||||||+++||+|+.+++++++++||+++++++++++..+.+++ ..|+.||++++++
T Consensus 182 ~ie~m~L~~~~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~vlVd~~~~~~~l-~~~~~SL~~~~~v 255 (271)
T PRK09213 182 RIETMSLSKRSLKEGSRVLIVDDFMKAGGTINGMISLLKEFDAEVVGIGVLVETKEPEERL-VDDYVSLLKLSEV 255 (271)
T ss_pred cceEEEEeHhhcCCcCEEEEEeeecccCHhHHHHHHHHHHCCCEEEEEEEEEECCCChhhc-CCceEEEEEEehh
Confidence 25666666777999999999999999999999999999999999999999998765665 4589999999876
No 30
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=99.91 E-value=6.8e-24 Score=169.02 Aligned_cols=137 Identities=28% Similarity=0.428 Sum_probs=118.1
Q ss_pred eheeHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCc
Q 028297 56 MFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGT 135 (211)
Q Consensus 56 ~~~d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~ 135 (211)
.|.|+..++.+|...+.+++.+++.+ ++|+|++|+.+|+++|..+|..||+|+..+||+++.++..
T Consensus 30 ~y~d~~~l~~~p~~~~~l~~~l~~~~---~~d~Vvg~~~gGi~~A~~~a~~l~~p~~~~rK~~k~~g~~----------- 95 (170)
T PRK13811 30 YYIDIKTAITHPALLKEIAAEVAKRY---DFDVVAGVAVGGVPLAVAVSLAAGKPYAIIRKEAKDHGKA----------- 95 (170)
T ss_pred EEEeCchhccCHHHHHHHHHHHHhhC---CCCEEEecCcCcHHHHHHHHHHHCCCEEEEecCCCCCCCc-----------
Confidence 47799999999999999988886543 6899999999999999999999999999999876543321
Q ss_pred eeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch-hhcccC--CCCeEEEEccccccc
Q 028297 136 DRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-GQRRLD--GKPLYILVEPRLSVN 210 (211)
Q Consensus 136 ~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~-~~~~l~--~~~l~sl~~~~~~~~ 210 (211)
... .+. .+|++|+||||+++||+|+.+++++|+++||+++++++++++.+ ++++++ |+|++||+++++++|
T Consensus 96 -~~~--~g~-~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga~v~~~~~~vdr~~g~~~~l~~~gv~~~sl~~~~~~~~ 169 (170)
T PRK13811 96 -GLI--IGD-VKGKRVLLVEDVTTSGGSALYGIEQLRAAGAVVDDVVTVVDREQGAEELLAELGITLTPLVRVSELLN 169 (170)
T ss_pred -ceE--Ecc-cCCCEEEEEEecccccHHHHHHHHHHHHCCCeEEEEEEEEECCccHHHHHHhcCCcEEEEeEHHHHhc
Confidence 122 244 48999999999999999999999999999999999999999987 677764 999999999999876
No 31
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=99.91 E-value=6.2e-24 Score=192.08 Aligned_cols=157 Identities=19% Similarity=0.360 Sum_probs=135.6
Q ss_pred eeeecceeeeeecCCCCCCeeheeHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEee
Q 028297 36 CFVFSSWSFFFFQIWWAAGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLR 115 (211)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~ 115 (211)
++-+..+...+-...| .|.|++.++.+|..++.+++.+++.+++.++|.|+|++.||+++|..+|..+++|+.+.|
T Consensus 299 al~fG~F~L~SG~~S~----~YiD~~~lls~P~~l~~v~~~la~~l~~~~~D~I~Gia~gGiPlAt~lA~~lg~p~v~vR 374 (477)
T PRK05500 299 CLLFGEYVQASGATFS----YYIDLRKIISNPQLFHQVLSAYAEILKNLTFDRIAGIPYGSLPTATGLALHLHHPMIFPR 374 (477)
T ss_pred CeEeCcEEECCcCcCC----EEEEChhhhcCHHHHHHHHHHHHHHhccCCCCEEEEEccchHHHHHHHHHHhCCCEEEEe
Confidence 4556665555544444 799999999999999999999999998778999999999999999999999999999999
Q ss_pred cCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch-hhccc
Q 028297 116 KPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-GQRRL 194 (211)
Q Consensus 116 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~-~~~~l 194 (211)
|+.+.++. ..+ ..+.+.+|++||||||++|||+|+.++++.|+++|++++++++++++.+ ++++|
T Consensus 375 Ke~K~~G~------------~~~--ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~aG~~V~~v~vlVDR~~g~~~~L 440 (477)
T PRK05500 375 KEVKAHGT------------RRL--IEGNFHPGETVVVVDDILITGKSVMEGAEKLKSAGLNVRDIVVFIDHEQGVKDKL 440 (477)
T ss_pred cCcCccCC------------Cce--EecCCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEEEEEEEEECCcchHHHH
Confidence 88664432 122 2355679999999999999999999999999999999999999999988 77888
Q ss_pred C--CCCeEEEEccccccc
Q 028297 195 D--GKPLYILVEPRLSVN 210 (211)
Q Consensus 195 ~--~~~l~sl~~~~~~~~ 210 (211)
+ |+|++||++++|+++
T Consensus 441 ~~~gv~~~Sl~tl~el~~ 458 (477)
T PRK05500 441 QSHGYQAYSVLTISEITE 458 (477)
T ss_pred HhcCCCEEEEEEHHHHHH
Confidence 5 899999999999876
No 32
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=99.91 E-value=3.2e-23 Score=173.15 Aligned_cols=150 Identities=23% Similarity=0.362 Sum_probs=124.3
Q ss_pred eheeHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCC-ceeeeeeeeec-
Q 028297 56 MFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPG-EVISEAYVLEY- 133 (211)
Q Consensus 56 ~~~d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~-~~~~~~~~~~~- 133 (211)
.|.|+..++.+|.+.+.+++.++.++.+.++|+|++++.+|+++|..+|.+||+|++++||.++... ...+ +|....
T Consensus 82 gy~d~~~il~~p~~~~~v~~~la~~~~~~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~Rk~~~~~~~~~v~-~y~s~s~ 160 (238)
T PRK08558 82 GYVDNSSVVFDPSFLRLIAPVVAERFMGLRVDVVLTAATDGIPLAVAIASYFGADLVYAKKSKETGVEKFYE-EYQRLAS 160 (238)
T ss_pred CEEEchhhhcCHHHHHHHHHHHHHHccCCCCCEEEEECcccHHHHHHHHHHHCcCEEEEEecCCCCCcceEE-EeeccCC
Confidence 4899999999999999999999999987789999999999999999999999999999887654322 2222 232111
Q ss_pred Cc-eeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch-hhcccC---CCCeEEEEccc
Q 028297 134 GT-DRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-GQRRLD---GKPLYILVEPR 206 (211)
Q Consensus 134 ~~-~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~-~~~~l~---~~~l~sl~~~~ 206 (211)
+. ..+.+..+.+.+|++||||||+++||+|+.+++++++++||++++++++++... +.+++. ++|+.+|++++
T Consensus 161 ~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vvgv~vlv~~~~~~~~~l~~~~~vpv~sl~~~~ 238 (238)
T PRK08558 161 GIEVTLYLPASALKKGDRVLIVDDIIRSGETQRALLDLARQAGADVVGVFFLIAVGEVGIDRAREETDAPVDALYTLE 238 (238)
T ss_pred CceeEEEecHHHcCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEEEEEEEEecCchHHHHHhHhcCCCEEEEEEeC
Confidence 11 234554445679999999999999999999999999999999999999999987 567664 89999999875
No 33
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=99.90 E-value=6.7e-23 Score=167.31 Aligned_cols=149 Identities=19% Similarity=0.296 Sum_probs=119.9
Q ss_pred CCCCeeheeHHHHhcCHHHHHHHHHHHHHHHhh--cCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCceeeee
Q 028297 51 WAAGIMFQDITTLLLDHKAFKDTVDIFVDRYRD--MGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEA 128 (211)
Q Consensus 51 ~~~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~--~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~ 128 (211)
|.++..|.|+..+..+|...+.+++.+++.+.. .++|+|+|++.||+++|..+|..|++|+...++++..++...
T Consensus 49 ~~~~~~yid~~~~~~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~k~~~~~~~--- 125 (200)
T PRK02277 49 PAPKDIHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPLATLVADELGKDLAIYHPKKWDHGEGE--- 125 (200)
T ss_pred CCCCCEEEEChhhccCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHHHHHHHHHHhCCCcEEEecccccccccc---
Confidence 456678999999999999999999999998853 378999999999999999999999999987765442111110
Q ss_pred eeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCchhhcccCCCCeEEEEccccc
Q 028297 129 YVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGKPLYILVEPRLS 208 (211)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~~~~~l~~~~l~sl~~~~~~ 208 (211)
.....+..... ..+|++||||||++|||+|+.++++.|+++||+++++++++++. +.++++|+|++||++++.+
T Consensus 126 ----~~~~~~~~~~~-~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~Ga~~v~v~vlvdk~-g~~~~~~vpv~sl~~~~~~ 199 (200)
T PRK02277 126 ----KKTGSFSRNFA-SVEGKRCVIVDDVITSGTTMKETIEYLKEHGGKPVAVVVLIDKS-GIDEIDGVPVYSLIRVVRV 199 (200)
T ss_pred ----cccceeccccc-cCCcCEEEEEeeccCchHHHHHHHHHHHHcCCEEEEEEEEEECc-chhhhcCCCeEEEEEEEec
Confidence 00111211112 25899999999999999999999999999999999999999987 4567789999999998754
No 34
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=99.90 E-value=4.5e-23 Score=168.53 Aligned_cols=144 Identities=28% Similarity=0.380 Sum_probs=122.7
Q ss_pred CCeeheeHHHHhcCHHHHHHHHHHHHHHHhhc--CCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCceeeeeee
Q 028297 53 AGIMFQDITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYV 130 (211)
Q Consensus 53 ~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~~--~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~ 130 (211)
++-.|.|.+.++.+|...+.+++.+++++.+. ++|+|++++.||+++|..+|..|++|+...+|..+..+.
T Consensus 30 ~s~~y~d~~~i~~~p~~~~~~~~~la~~i~~~~~~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk~~~~~g~------- 102 (202)
T PRK00455 30 KSPYYFDCRKLLSYPEALALLGRFLAEAIKDSGIEFDVVAGPATGGIPLAAAVARALDLPAIFVRKEAKDHGE------- 102 (202)
T ss_pred cCCeeEeChhhhcCHHHHHHHHHHHHHHHHhcCCCCCEEEecccCcHHHHHHHHHHhCCCEEEEecccCCCCC-------
Confidence 34468999999999999999999999999876 789999999999999999999999999998875533221
Q ss_pred eecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch-hhcccC--CCCeEEEEcccc
Q 028297 131 LEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-GQRRLD--GKPLYILVEPRL 207 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~-~~~~l~--~~~l~sl~~~~~ 207 (211)
...+. +...+|++||||||+++||+|+.++++.|+++|++++++++++++.+ ++++++ |+|++||+++++
T Consensus 103 ----~~~~~---~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga~~v~~~vlv~~~~~~~~~~~~~g~~~~sl~~~~~ 175 (202)
T PRK00455 103 ----GGQIE---GRRLFGKRVLVVEDVITTGGSVLEAVEAIRAAGAEVVGVAVIVDRQSAAQEVFADAGVPLISLITLDD 175 (202)
T ss_pred ----CceEE---ccCCCCCEEEEEecccCCcHHHHHHHHHHHHcCCEEEEEEEEEECcchHHHHHHhcCCcEEEEeeHHH
Confidence 01222 22347999999999999999999999999999999999999999975 556554 899999999998
Q ss_pred ccc
Q 028297 208 SVN 210 (211)
Q Consensus 208 ~~~ 210 (211)
+.+
T Consensus 176 ~~~ 178 (202)
T PRK00455 176 LLE 178 (202)
T ss_pred HHH
Confidence 765
No 35
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=99.90 E-value=5e-23 Score=164.47 Aligned_cols=144 Identities=17% Similarity=0.260 Sum_probs=122.7
Q ss_pred CCCCeeheeHHHHhcCHHHHHHHHHHHHHHHhh-cCCcEEEEecCCccchHHHHHHHhCCC-----eEEeecCCCCCCce
Q 028297 51 WAAGIMFQDITTLLLDHKAFKDTVDIFVDRYRD-MGISVVAGIEARGFVFGPSIALAIGAK-----FVPLRKPNKLPGEV 124 (211)
Q Consensus 51 ~~~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~-~~~d~Iv~i~~gG~~~A~~lA~~L~~p-----~~~~~k~~~~~~~~ 124 (211)
.+++-.|.|.+.++.+|...+.+++.+++.+++ .++|+|++++.||+++|..+|..|++| +...||.++..+..
T Consensus 19 G~~s~~y~d~~~i~~~p~~~~~v~~~~~~~~~~~~~~d~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g~~ 98 (173)
T TIGR00336 19 GRKSPYYFNIKLFNTGPELANLIARYAAAIIKSHLEFDVIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGEG 98 (173)
T ss_pred CCcCCEEEECeecCChHHHHHHHHHHHHHHHHhcCCCCEEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCcccCCCC
Confidence 344446899999999999999999999999876 578999999999999999999999999 88887765432221
Q ss_pred eeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccC---CCCe
Q 028297 125 ISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLD---GKPL 199 (211)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~---~~~l 199 (211)
... .+...+|++||||||+++||+|+.++++.|+++|+++++++|++++.+ +.+++. |+|+
T Consensus 99 ------------~~~--~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~Ga~v~~~~vlvdr~~~~~~~~l~~~~gv~~ 164 (173)
T TIGR00336 99 ------------GNI--EGELLEGDKVVVVEDVITTGTSILEAVEIIQAAGGQVAGVIIAVDRQERSAGQEFEKEYGLPV 164 (173)
T ss_pred ------------Cce--ecCCCCCCEEEEEeccccChHHHHHHHHHHHHcCCeEEEEEEEEecCchhHHHHHHHhcCCeE
Confidence 111 244568999999999999999999999999999999999999999986 677773 9999
Q ss_pred EEEEccccc
Q 028297 200 YILVEPRLS 208 (211)
Q Consensus 200 ~sl~~~~~~ 208 (211)
+||++++|+
T Consensus 165 ~sl~~~~~l 173 (173)
T TIGR00336 165 ISLITLKDL 173 (173)
T ss_pred EEEEeHhhC
Confidence 999999874
No 36
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=99.90 E-value=2.2e-22 Score=162.64 Aligned_cols=134 Identities=27% Similarity=0.496 Sum_probs=115.3
Q ss_pred eheeHHHHhcCHHHHHHHHHHHHHHHhhc--CCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeec
Q 028297 56 MFQDITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEY 133 (211)
Q Consensus 56 ~~~d~~~l~~~~~~~~~~~~~la~~i~~~--~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~ 133 (211)
.|.|++.++.+|...+.+++.+++++++. ++|+|++++.||+++|..+|..|++|+...+|.+ +.
T Consensus 27 ~yid~~~l~~~p~~~~~~~~~La~~i~~~~~~~d~Ivgi~~gGi~~A~~la~~L~~~~i~~~k~~---~~---------- 93 (187)
T TIGR01367 27 YFLQSATLLEHPEALMELGGELAQKILDYGLKVDFIVGPAMGGVILGYEVARQLSVRSIFAEREG---GG---------- 93 (187)
T ss_pred eeEechhhhcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEccCcHHHHHHHHHHhCCCeEEEEEeC---Cc----------
Confidence 69999999999999999999999999865 7799999999999999999999999988776543 11
Q ss_pred CceeEEEecC-CcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCchhhcccCCCCeEEEEccc
Q 028297 134 GTDRLEMHVG-AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGKPLYILVEPR 206 (211)
Q Consensus 134 ~~~~~~~~~~-~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~~~~~l~~~~l~sl~~~~ 206 (211)
+.+..+ .+.+|++|||||||++||+|+.++++.|+++||+++++++++++.++.....++|+++|++++
T Consensus 94 ----~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga~vv~~~vlid~~~~~~~~~~~~~~sl~~~~ 163 (187)
T TIGR01367 94 ----MKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGGQVVGLACIIDRSQGGKPDSGVPLMSLKELE 163 (187)
T ss_pred ----EEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCCeEEEEEEEEECcCCCcccCCCCEEEEEEEe
Confidence 111112 235899999999999999999999999999999999999999998755555689999999983
No 37
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.90 E-value=9.8e-23 Score=164.88 Aligned_cols=144 Identities=26% Similarity=0.360 Sum_probs=123.4
Q ss_pred CCeeheeHHHHhcCHHHHHHHHHHHHHHHhhc-CCcEEEEecCCccchHHHHHHHhC-CC-eEEeecCCCCCCceeeeee
Q 028297 53 AGIMFQDITTLLLDHKAFKDTVDIFVDRYRDM-GISVVAGIEARGFVFGPSIALAIG-AK-FVPLRKPNKLPGEVISEAY 129 (211)
Q Consensus 53 ~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~~-~~d~Iv~i~~gG~~~A~~lA~~L~-~p-~~~~~k~~~~~~~~~~~~~ 129 (211)
++..|.|.+.+..+|+..+.++..++..+.++ ++|+|+||+.||+++|..+|..|+ .| +.+.||..+.++..
T Consensus 28 ~SpyY~d~~~~~~~p~~~~~i~~~~a~~~~~~~~~d~v~G~a~ggiP~A~~~a~~l~~~~~~~~~Rke~K~hG~~----- 102 (201)
T COG0461 28 KSPYYVDLRLFLTGPELLQLIAFALAEIIKEALEFDVVAGPALGGIPLAAATALALAHLPPMAYVRKEAKDHGTG----- 102 (201)
T ss_pred cCCeEEecccccCCHHHHHHHHHHHHHHhhccCCCcEEEeccccchHHHHHHHHHhccCCcEEEEeceeccCCCc-----
Confidence 44479999999999999999999999999885 899999999999999999999994 22 66778776655542
Q ss_pred eeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch-hhcccC--CCCeEEEEccc
Q 028297 130 VLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-GQRRLD--GKPLYILVEPR 206 (211)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~-~~~~l~--~~~l~sl~~~~ 206 (211)
+.++ +...+|++|+||||++|||+++.+++++|+++|+.++++++++++.+ +.+.++ |+++.+|++++
T Consensus 103 ------~~ie---G~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~gv~~ivDR~~~~~~~~~~~g~~~~sl~tl~ 173 (201)
T COG0461 103 ------GLIE---GGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVVGVAVIVDRQSGAKEVLKEYGVKLVSLVTLS 173 (201)
T ss_pred ------ceeE---ecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEEEEEEEEecchhHHHHHHhcCCceEEEeeHH
Confidence 1233 34459999999999999999999999999999999999999999987 666665 99999999999
Q ss_pred cccc
Q 028297 207 LSVN 210 (211)
Q Consensus 207 ~~~~ 210 (211)
|+++
T Consensus 174 dl~~ 177 (201)
T COG0461 174 DLLE 177 (201)
T ss_pred HHHH
Confidence 9875
No 38
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=99.88 E-value=3e-21 Score=154.86 Aligned_cols=152 Identities=24% Similarity=0.352 Sum_probs=117.3
Q ss_pred eeeeecCCCCCCeeheeHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCC--
Q 028297 43 SFFFFQIWWAAGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKL-- 120 (211)
Q Consensus 43 ~~~~~~~~~~~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~-- 120 (211)
+.+..++|+..+..+.+..+++.+|.+.+.+++.+++.+.+ ++|+|++++.||+++|..+|..|++|+..++|.++.
T Consensus 11 ~~~~~~~~~~~~~~~i~~~k~~~dp~l~~~~~~~La~~l~~-~~d~Iv~v~~gGiplA~~lA~~L~~p~~~~~k~~~~~~ 89 (178)
T PRK07322 11 VTRELPLIRVGPDLAIALFVILGDTELTEAAAEALAKRLPT-EVDVLVTPETKGIPLAHALSRRLGKPYVVARKSRKPYM 89 (178)
T ss_pred EEeecCeeEeCCCCEEEEEhhhCCHHHHHHHHHHHHHHcCC-CCCEEEEeccCCHHHHHHHHHHHCCCEEEEEEeCCCCC
Confidence 44557888887777889999999999999999999999976 789999999999999999999999999877665432
Q ss_pred CCceeeeeeeeecCce-eEEEecCC--cCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCchhhcccC
Q 028297 121 PGEVISEAYVLEYGTD-RLEMHVGA--IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLD 195 (211)
Q Consensus 121 ~~~~~~~~~~~~~~~~-~~~~~~~~--~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~~~~~l~ 195 (211)
+.......+....+.. .+...... ..+|++||||||+++||+|+.+++++|+++||+.++++++++..++..+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~aa~~~L~~~GA~~V~~~~v~~~~~~~~~~~ 167 (178)
T PRK07322 90 QDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVSTGGTLTALERLVERAGGQVVAKAAIFAEGDASNRLD 167 (178)
T ss_pred CCceEEEEEEEEeccceEEEecCccccccCCCEEEEEeccccccHHHHHHHHHHHHcCCEEEEEEEEEEcCCCCCCCc
Confidence 1111111111111111 22221111 248999999999999999999999999999999999999999988655654
No 39
>PRK06031 phosphoribosyltransferase; Provisional
Probab=99.82 E-value=4.5e-19 Score=147.57 Aligned_cols=150 Identities=21% Similarity=0.370 Sum_probs=108.8
Q ss_pred eeHHHHhcCH---HHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCC-eEEeecCCCCCC-ceee---eee
Q 028297 58 QDITTLLLDH---KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAK-FVPLRKPNKLPG-EVIS---EAY 129 (211)
Q Consensus 58 ~d~~~l~~~~---~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p-~~~~~k~~~~~~-~~~~---~~~ 129 (211)
++++.++.++ ...+.+++.+++++...++|+|++++.+|+++|..+|..||++ +..+++.++... .... .+.
T Consensus 54 ~~i~~ll~~~~~~~~~~~la~~La~~~~~~~~DvIVgv~~~Gi~lA~~lA~~Lg~~~~vpl~~~rK~~~~~~l~~~~~si 133 (233)
T PRK06031 54 RALASLIVNQASFEVLDALAEHLAEKARAFDPDVVAGLPTLGLTLAAAVARKLGHTRYVPLGTSRKFWYRDELSVPLSSI 133 (233)
T ss_pred CchhhHhCChhHHHHHHHHHHHHHHHcccCCCcEEEEeccCCHHHHHHHHHHHCCCCceEEEEccccccccccccceeee
Confidence 5888888887 5556799999999877788999999999999999999999974 344443332211 0000 000
Q ss_pred eeecCceeEEEecC--CcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch-hhcccC--C----CCeE
Q 028297 130 VLEYGTDRLEMHVG--AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE-GQRRLD--G----KPLY 200 (211)
Q Consensus 130 ~~~~~~~~~~~~~~--~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~-~~~~l~--~----~~l~ 200 (211)
........+.+... ...+|++||||||+++||+|+.+++++|+++|++++++++++.+++ ++++|. + .++.
T Consensus 134 tt~~~~~~~~l~~~~~~~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga~Vvgv~v~v~~g~~~~~~l~~~~~~~~~~~~ 213 (233)
T PRK06031 134 TTPDQGKRLYIDPRMLPLLEGRRVALIDDVISSGASIVAGLRLLAACGIEPAGIGAAMLQSERWRESLAAAGPQWPARVV 213 (233)
T ss_pred eccCccceEEecccccccCCCCEEEEEEeEccccHHHHHHHHHHHHcCCeEEEEEEEEEccccHHHHHHhcCCCcccceE
Confidence 00011123333221 2358999999999999999999999999999999999999999998 777775 2 4577
Q ss_pred EEEcccc
Q 028297 201 ILVEPRL 207 (211)
Q Consensus 201 sl~~~~~ 207 (211)
++.+++-
T Consensus 214 ~~~~~p~ 220 (233)
T PRK06031 214 GVFATPI 220 (233)
T ss_pred EEeeccc
Confidence 7776653
No 40
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=99.82 E-value=1.2e-19 Score=136.30 Aligned_cols=122 Identities=26% Similarity=0.402 Sum_probs=91.7
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhc--CCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCceeEE
Q 028297 62 TLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLE 139 (211)
Q Consensus 62 ~l~~~~~~~~~~~~~la~~i~~~--~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 139 (211)
+++.+++..+.+++.+++++.+. ++|.|+|++.||+++|..+|..|+.|+....+......... ..........+.
T Consensus 2 ~i~~~~~~~~~~~~~la~~i~~~~~~~~~ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 79 (125)
T PF00156_consen 2 KIILSPEQIEALAERLAEQIKESGFDFDVIVGIPRGGIPLAAALARALGIPLVFVRKRKSYYPGSD--KTSREKNNQELF 79 (125)
T ss_dssp EEEEBHHHHHHHHHHHHHHHHHHTTTSSEEEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEESEEE--EEEEETEEEEEE
T ss_pred EEEEcHHHHHHHHHHHHHHHHHhCCCCCEEEeehhccHHHHHHHHHHhCCCccceeeeecccccch--hhhhccCceEEe
Confidence 45678899999999999999876 45779999999999999999999999877554321100000 001111111222
Q ss_pred EecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEE
Q 028297 140 MHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 185 (211)
Q Consensus 140 ~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~ 185 (211)
.......+||+||||||+++||+|+.++++.|+++|++++++++++
T Consensus 80 ~~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v~~~vl~ 125 (125)
T PF00156_consen 80 IIDKEDIKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVVGVAVLV 125 (125)
T ss_dssp EEESSSGTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEEEEEEEE
T ss_pred ecccccccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEEEEEEEC
Confidence 2234446999999999999999999999999999999999999986
No 41
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=99.80 E-value=1.3e-18 Score=135.93 Aligned_cols=140 Identities=19% Similarity=0.325 Sum_probs=110.8
Q ss_pred eheeHHHHhcCHHHHHHHHHHHHHHH-hhc--CCcEEEEecCCccchHHHHHHHhCCCeEEee--cCCCCCCceeeeeee
Q 028297 56 MFQDITTLLLDHKAFKDTVDIFVDRY-RDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLR--KPNKLPGEVISEAYV 130 (211)
Q Consensus 56 ~~~d~~~l~~~~~~~~~~~~~la~~i-~~~--~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~--k~~~~~~~~~~~~~~ 130 (211)
.+.+++.+-..+.-.+.++..+++.+ +.. ++|+|+++...|+|+|.++|..||..+...+ |.++..+.-
T Consensus 54 i~i~W~siG~s~sRl~~Is~am~Dm~m~~~~~evDvVvGIa~sGvPlAtmvA~elg~elaiY~PrK~~~de~~~------ 127 (203)
T COG0856 54 IKIDWRSIGKSGSRLRYISEAMADMIMEKVSFEVDVVVGIAISGVPLATMVAYELGKELAIYHPRKHRKDEGAG------ 127 (203)
T ss_pred eEEechhhccchHHHHHHHHHHHHHHHHhccceeEEEEEEeecCccHHHHHHHHhCCceEEEecccccccccCC------
Confidence 47899999888888888888888843 332 6799999999999999999999999997754 333221110
Q ss_pred eecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCchhhcccCCCCeEEEEccc
Q 028297 131 LEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGKPLYILVEPR 206 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~~~~~l~~~~l~sl~~~~ 206 (211)
..+.+.-.... ..||+|+||||++|||+|+.++++.|++.|++.+.+.+++++. |...++|+|+.||+.+.
T Consensus 128 ---~~G~iS~NFa~-V~gK~cvIVDDvittG~Ti~E~Ie~lke~g~kpv~v~VL~dK~-G~dei~gvPi~sLlri~ 198 (203)
T COG0856 128 ---KGGSISSNFAS-VEGKRCVIVDDVITTGSTIKETIEQLKEEGGKPVLVVVLADKK-GVDEIEGVPVESLLRIL 198 (203)
T ss_pred ---cCceeeccccc-ccCceEEEEecccccChhHHHHHHHHHHcCCCcEEEEEEEccC-CcccccCcchHHhheee
Confidence 01122211123 4999999999999999999999999999999999999999987 66789999999998753
No 42
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=99.74 E-value=3.4e-18 Score=141.86 Aligned_cols=146 Identities=18% Similarity=0.151 Sum_probs=101.2
Q ss_pred eeeeeeeeecceeeeeecCCCCCCeeheeHHHHhcCHHHHHHHHHHHHHHHhh--cCCcEEEEec-------CCccchHH
Q 028297 31 FFLFFCFVFSSWSFFFFQIWWAAGIMFQDITTLLLDHKAFKDTVDIFVDRYRD--MGISVVAGIE-------ARGFVFGP 101 (211)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~--~~~d~Iv~i~-------~gG~~~A~ 101 (211)
...+.++.|.+..++-+.. .+...+....+.++++++..+.. ..+|.||++| .+||+++.
T Consensus 66 ~~~~~~~~Y~~~l~~~i~~-----------~Kf~~~~~l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ~~ 134 (225)
T COG1040 66 ERLRSLGSYNGPLRELISQ-----------LKFQGDLDLAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQSE 134 (225)
T ss_pred eeEEEEEEccHHHHHHHHH-----------hhhCCchhHHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCCHHH
Confidence 3344455555555553333 33345667778888888888872 3689999999 58999999
Q ss_pred HHHHHhC----CCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCe
Q 028297 102 SIALAIG----AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAE 177 (211)
Q Consensus 102 ~lA~~L~----~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~ 177 (211)
.+|+.++ .|+...+++.+.++.......+..+.+++|.+.. .....++|+|||||+|||+|+.++++.|+++||+
T Consensus 135 ~la~~l~~~~~~~~~~~r~k~~~~q~~l~~~~rr~nl~~aF~~~~-~~~~~~~vlLvDDV~TTGaTl~~~~~~L~~~Ga~ 213 (225)
T COG1040 135 LLARALARRLGKPIALRRVKDTSPQQGLKALERRRNLKGAFRLKK-GIEEPKNVLLVDDVYTTGATLKEAAKLLREAGAK 213 (225)
T ss_pred HHHHHHHHHhCchHHHHHHhccccccccchHHHHHhccCCeecCC-CCCCCCeEEEEecccccHHHHHHHHHHHHHcCCc
Confidence 9988775 4443333333333333333344445566777643 3323399999999999999999999999999999
Q ss_pred EEEEEEEEeCc
Q 028297 178 VVECACVVGLP 188 (211)
Q Consensus 178 ~V~v~~~~~~~ 188 (211)
+|.+++++...
T Consensus 214 ~v~~~~lar~~ 224 (225)
T COG1040 214 RVFVLTLARAP 224 (225)
T ss_pred eEEEEEEEecC
Confidence 99999998653
No 43
>KOG1503 consensus Phosphoribosylpyrophosphate synthetase-associated protein [Amino acid transport and metabolism; Nucleotide transport and metabolism]
Probab=99.73 E-value=6.1e-18 Score=138.64 Aligned_cols=196 Identities=18% Similarity=0.198 Sum_probs=135.1
Q ss_pred cccccceeeEEEeeecccCcccceeeeeeeee-e--------------eeeecceeeeeecCCCCCCeeheeHHHHhcCH
Q 028297 3 SEETRGYRAFLKQSVWCLTSQYQVSFSFFFLF-F--------------CFVFSSWSFFFFQIWWAAGIMFQDITTLLLDH 67 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------------~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~~ 67 (211)
+|||||+|+||+|+.... +|.+.|||+ | ++||.-|++|. +-..|..|.-+.++.++..+
T Consensus 50 ~~svrgkdvfiiqt~skd-----vn~~vmellim~yackts~aksiigvipy~pyskqc-kmrkrgsiv~klla~mmcka 123 (354)
T KOG1503|consen 50 KESVRGKDVFIIQTGSKD-----VNNDVMELLIMAYACKTSCAKSIIGVIPYLPYSKQC-KMRKRGSIVSKLLASMMCKA 123 (354)
T ss_pred hhhccCceEEEEEecCcc-----cchHHHHHHHHHHHHhhhhhhceEEEeecCccchhh-hhhhcccHHHHHHHHHHHhc
Confidence 589999999999998754 999999984 3 57777777773 33345556666667766666
Q ss_pred HHHH-HHHHHHHHHHhh---------------------c----CCcEEEEecCCccchHHHHHHHhCCCeEEeecCCCCC
Q 028297 68 KAFK-DTVDIFVDRYRD---------------------M----GISVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLP 121 (211)
Q Consensus 68 ~~~~-~~~~~la~~i~~---------------------~----~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~ 121 (211)
++.+ ..++++.+.+++ . ..-+||+-..|-.+.|...|++|.+.++.++-+.+..
T Consensus 124 glthlitmdlhqkeiqgff~~pvdnlraspfllqyiqe~ipdyrnavivaksp~~akka~syaerlrlglavihge~k~~ 203 (354)
T KOG1503|consen 124 GLTHLITMDLHQKEIQGFFSIPVDNLRASPFLLQYIQEEIPDYRNAVIVAKSPGVAKKAQSYAERLRLGLAVIHGEQKDT 203 (354)
T ss_pred ccceEEeehhhhHhhcceecccccccccCHHHHHHHHHhCccccceEEEecCcchhhHHHhHHHHHhhceeEeecccccc
Confidence 6555 444555444332 1 2246777777788899999999988877765322110
Q ss_pred -----------Cceeeeee--eee------cCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEE
Q 028297 122 -----------GEVISEAY--VLE------YGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 182 (211)
Q Consensus 122 -----------~~~~~~~~--~~~------~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~ 182 (211)
-.+...+. ..+ ..+..+.+ .|++ .|+-.++|||+++.-.+-.+|++.|++.||-++++.
T Consensus 204 e~d~~dgr~spp~~~~~t~~~~~~lp~~~~k~kppltv-vgdv-ggriaimvddiiddvqsfvaaae~lkergaykiyv~ 281 (354)
T KOG1503|consen 204 ESDLVDGRHSPPPVVTATTHPSLELPAQISKEKPPLTV-VGDV-GGRIAIMVDDIIDDVQSFVAAAEVLKERGAYKIYVM 281 (354)
T ss_pred ccccccCCcCCCCccccccCccccCchhhcccCCCeEE-Eecc-CceEEEEehhhHHhHHHHHHHHHHHHhcCceEEEEE
Confidence 00000000 000 01112332 2444 899999999999999999999999999999999999
Q ss_pred EEEeCch--hhcccCCCCeEEEEccc
Q 028297 183 CVVGLPE--GQRRLDGKPLYILVEPR 206 (211)
Q Consensus 183 ~~~~~~~--~~~~l~~~~l~sl~~~~ 206 (211)
++|+..+ +-..|+.+|+.+++.-+
T Consensus 282 athgllssdapr~lees~idevvvtn 307 (354)
T KOG1503|consen 282 ATHGLLSSDAPRLLEESPIDEVVVTN 307 (354)
T ss_pred eecccccccchhhhhcCCCceEEEec
Confidence 9999987 66667899998887544
No 44
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=99.72 E-value=1.4e-17 Score=134.89 Aligned_cols=120 Identities=17% Similarity=0.213 Sum_probs=83.0
Q ss_pred cCHHHHHHHHHHHHHHHhhc---CCcEEEEec-------CCccchHHHHHHHhCCC---eE-EeecCCCCCCceeeeeee
Q 028297 65 LDHKAFKDTVDIFVDRYRDM---GISVVAGIE-------ARGFVFGPSIALAIGAK---FV-PLRKPNKLPGEVISEAYV 130 (211)
Q Consensus 65 ~~~~~~~~~~~~la~~i~~~---~~d~Iv~i~-------~gG~~~A~~lA~~L~~p---~~-~~~k~~~~~~~~~~~~~~ 130 (211)
.+..+.+.+++.++..+... .+|.|+++| .+||+++..+|+.+... +. .+.+.+..++...+...+
T Consensus 56 ~~~~l~~~l~~~l~~~~~~~~~~~~~~ivpVP~~~~r~~~RGfnq~~~la~~l~~~~~~~~~~l~r~~~~~Q~~l~~~~R 135 (190)
T TIGR00201 56 GQAEIIRALASLLSLTVSKAYRDLPDVIVPVPLSKEREWRRGFNQADLLAQCLSRWLFNYHNIVIRLNNETQSKLKATLR 135 (190)
T ss_pred CChHHHHHHHHHHHHHHHhhccCCCCEEEeCCCCHHHHHHhCCCHHHHHHHHHHHHhCCCcceEEEecccccccCCHHHH
Confidence 35566677777777665432 358999999 49999888888766422 11 122222233333333333
Q ss_pred eecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEE
Q 028297 131 LEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 185 (211)
Q Consensus 131 ~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~ 185 (211)
..+.++.|.+... ..+|++|||||||+|||+|+.++++.|+++||++|++++++
T Consensus 136 ~~n~~~~f~~~~~-~~~~~~vllvDDV~TTGaTl~~~~~~L~~~Ga~~V~~~~la 189 (190)
T TIGR00201 136 FLNLENAFDLKNN-SFQGRNIVLVDDVVTTGATLHEIARLLLELGAASVQVWTLA 189 (190)
T ss_pred HHHHhCcEEccCC-CCCCCEEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEEE
Confidence 3344556765433 34899999999999999999999999999999999999986
No 45
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.71 E-value=2.8e-16 Score=126.41 Aligned_cols=119 Identities=19% Similarity=0.193 Sum_probs=84.5
Q ss_pred cCHHHHHHHHHHHHHHHhhc---CCcEEEEecCCccchHHHHHHHhCCCeE--EeecCCCCCCceeeeeeeeecCceeEE
Q 028297 65 LDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGAKFV--PLRKPNKLPGEVISEAYVLEYGTDRLE 139 (211)
Q Consensus 65 ~~~~~~~~~~~~la~~i~~~---~~d~Iv~i~~gG~~~A~~lA~~L~~p~~--~~~k~~~~~~~~~~~~~~~~~~~~~~~ 139 (211)
.+.+......+.++.++.+. +.++|++++.||+.+|..+|+.|++|+. .+++.+....... ..-.+.
T Consensus 17 ~s~~~i~~~i~~la~~i~~~~~~~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~~~~~~~~~--------~~~~~~ 88 (181)
T PRK09162 17 VSAAEVEAAIDRMADEITADLADENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHATRYRNETTG--------GELVWK 88 (181)
T ss_pred ecHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHHcCCCcccCEEEEEecCCCccC--------CceeEe
Confidence 34455555666666666542 3479999999999999999999999863 2333222111100 000122
Q ss_pred EecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCchhh
Q 028297 140 MHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQ 191 (211)
Q Consensus 140 ~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~~~ 191 (211)
......++||+|||||||+|||+|+.++++.|+++||+.|++++++++...+
T Consensus 89 ~~~~~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga~~V~~avL~~k~~~~ 140 (181)
T PRK09162 89 VKPRESLKGRTVLVVDDILDEGHTLAAIRDRCLEMGAAEVYSAVLVDKTHDR 140 (181)
T ss_pred cCCCCCCCCCEEEEEccccCcHHHHHHHHHHHHhCCCCEEEEEEEEEcCccc
Confidence 2122235999999999999999999999999999999999999999997543
No 46
>PRK08525 amidophosphoribosyltransferase; Provisional
Probab=99.70 E-value=1e-16 Score=145.11 Aligned_cols=137 Identities=18% Similarity=0.182 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCe--EEeecCCCCCCceeeeeeeeecCceeEEEec-CC
Q 028297 68 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKF--VPLRKPNKLPGEVISEAYVLEYGTDRLEMHV-GA 144 (211)
Q Consensus 68 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~--~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 144 (211)
.....+++.|++.+.. +.|.|+++|.+|+++|..+|+.||+|+ ..++|++. .........+.++.+.++.+.. ..
T Consensus 259 ~~R~~~G~~La~~~~~-~~d~Vv~vPd~g~~~A~~~A~~lgip~~~~l~rk~~~-~r~~i~~~qr~rn~~~~~~~~~~~~ 336 (445)
T PRK08525 259 EVRKKMGEELAKKFPI-KADFVVPVPDSGVPAAIGYAQESGIPFEMAIVRNHYV-GRTFIEPTQEMRNLKVKLKLNPMSK 336 (445)
T ss_pred HHHHHHHHHHHHHhcc-cCCeEEECCchHHHHHHHHHHHhCCCccceEEEeecc-ccccCCHHHHHHhhheeEEeccccc
Confidence 4455888888887753 678999999999999999999999998 34554421 1111111111122222343322 23
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCCeEEEEccc
Q 028297 145 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYILVEPR 206 (211)
Q Consensus 145 ~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~l~sl~~~~ 206 (211)
.++||+||||||++|||+|+.++++.|+++||++|+++++|.... +...++..++..|+.-+
T Consensus 337 ~v~gK~VlLVDDvitTG~Tl~~a~~~Lr~aGA~~V~v~~~hp~~~~~~~~~i~~~~~~~li~~~ 400 (445)
T PRK08525 337 VLEGKRIVVIDDSIVRGTTSKKIVSLLRAAGAKEIHLRIACPEIKFPCYYGIDTPTFEELISAN 400 (445)
T ss_pred ccCCCeEEEEecccCcHHHHHHHHHHHHhcCCCEEEEEEECCCcCCchhhhCcCCChhhEEEcC
Confidence 358999999999999999999999999999999999999999876 66677666677776544
No 47
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.70 E-value=4.1e-16 Score=123.83 Aligned_cols=119 Identities=15% Similarity=0.182 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHHHhhc---CCcEEEEecCCccchHHHHHHHhCCCeEE--eecCCCCCCceeeeeeeeecCceeEEE
Q 028297 66 DHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNKLPGEVISEAYVLEYGTDRLEM 140 (211)
Q Consensus 66 ~~~~~~~~~~~la~~i~~~---~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~--~~k~~~~~~~~~~~~~~~~~~~~~~~~ 140 (211)
+++..+...+.+|.++.+. +.++|++|.+||+.+|..+++.|++|... +.-........ ..+......
T Consensus 4 s~~~i~~~i~~lA~~I~~~~~~~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~~-------~~~~~~~~~ 76 (166)
T TIGR01203 4 PEEQIKARIAELAKQITEDYAGKPLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGMQ-------SSGDVKILK 76 (166)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCCeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCCc-------ccCceEEec
Confidence 4455666667777776543 45799999999999999999999987532 32111000000 000001111
Q ss_pred ecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCchhh
Q 028297 141 HVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQ 191 (211)
Q Consensus 141 ~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~~~ 191 (211)
......+||+|||||||++||+|+.++++.|++.|++.+.++|++.++.++
T Consensus 77 ~~~~~~~gk~vlivDDii~TG~Tl~~~~~~l~~~g~~~i~~~~l~~k~~~~ 127 (166)
T TIGR01203 77 DLDLSIKGKDVLIVEDIVDTGLTLQYLLDLLKARKPKSLKIVTLLDKPSRR 127 (166)
T ss_pred CCCCCCCCCEEEEEeeeeCcHHHHHHHHHHHHHCCCCEEEEEEEEecCccC
Confidence 122335899999999999999999999999999999999999999998643
No 48
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=99.69 E-value=8.6e-17 Score=128.33 Aligned_cols=119 Identities=23% Similarity=0.329 Sum_probs=81.7
Q ss_pred cEEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCc-----------e----eeeee--eee--cCceeEEEecCCcCC
Q 028297 87 SVVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGE-----------V----ISEAY--VLE--YGTDRLEMHVGAIEP 147 (211)
Q Consensus 87 d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~-----------~----~~~~~--~~~--~~~~~~~~~~~~~~~ 147 (211)
-+||+++.||...|..+|++|++.+..+++.++.... . ..... ... ..+..+.+ .|++ +
T Consensus 5 aVIVa~~~g~akRAts~Ad~L~l~~avih~e~~~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~e~~~~~v-VGDV-~ 82 (184)
T PF14572_consen 5 AVIVAKDPGGAKRATSFADRLRLGFAVIHGERRDSESDGVDGRHSPPMSRSAAVSSSEEIPEMTPKEKPPMNV-VGDV-K 82 (184)
T ss_dssp EEEEESSGGGHHHHHHHHHHCT-EEEEE------------------------------------------EEE-ES---T
T ss_pred CEEEeCCCCchHhHHHHHHHhCCCeeEecCccccccccccccccCCCccccccccccchhhhcccCcccceEE-EEEc-c
Confidence 4899999999999999999999999887755432100 0 00000 000 00112332 3665 9
Q ss_pred CCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCCeEEEEcccc
Q 028297 148 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYILVEPRL 207 (211)
Q Consensus 148 gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~l~sl~~~~~ 207 (211)
||.++||||+++||+|+.++++.|++.||+.|+++++|+.++ +.++|++.++..++.-+-
T Consensus 83 gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs~~A~~~l~~s~Id~vvvTnT 144 (184)
T PF14572_consen 83 GKICIIVDDIIDTGGTLIKAAELLKERGAKKVYACATHGVFSGDAPERLEESPIDEVVVTNT 144 (184)
T ss_dssp TSEEEEEEEEESSTHHHHHHHHHHHHTTESEEEEEEEEE---TTHHHHHHHSSESEEEEETT
T ss_pred CCeEeeecccccchHHHHHHHHHHHHcCCCEEEEEEeCcccCchHHHHHhhcCCeEEEEecc
Confidence 999999999999999999999999999999999999999998 888899889999886543
No 49
>PRK11595 DNA utilization protein GntX; Provisional
Probab=99.68 E-value=3.1e-16 Score=130.39 Aligned_cols=122 Identities=16% Similarity=0.238 Sum_probs=82.6
Q ss_pred hcCHHHHHHHHHHHHHHHhh-------cCCcEEEEec-------CCccchHHHHHH----HhCCCeEE--eec-CCCCCC
Q 028297 64 LLDHKAFKDTVDIFVDRYRD-------MGISVVAGIE-------ARGFVFGPSIAL----AIGAKFVP--LRK-PNKLPG 122 (211)
Q Consensus 64 ~~~~~~~~~~~~~la~~i~~-------~~~d~Iv~i~-------~gG~~~A~~lA~----~L~~p~~~--~~k-~~~~~~ 122 (211)
..+..+.+.+++.+++.+.. ..+|.|+++| .|||+++..+|+ .+++|+.. +.+ +...++
T Consensus 84 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~d~ivpVPl~~~r~~~RGfnq~~~la~~la~~~~~~~~~~~l~r~~~~~~q 163 (227)
T PRK11595 84 SRRSELASVLARLLLLEWLQARRSTGLQKPDRIISVPLHQRRHWRRGFNQSDLLCRPLARWLGCDYDSEALTRTRATATQ 163 (227)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEecCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCcccceEEecCCCCc
Confidence 34556666777776654321 1468999998 369998766665 56787632 222 222233
Q ss_pred ceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeC
Q 028297 123 EVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 187 (211)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~ 187 (211)
...+...+..+.++.|.+. +. .+|++|||||||+|||+|+.++++.|+++|+++|++++++..
T Consensus 164 ~~l~~~~R~~n~~~~f~~~-~~-~~~~~vllvDDv~tTG~Tl~~~~~~L~~~g~~~V~~~~la~~ 226 (227)
T PRK11595 164 HFLSARLRKRNLKNAFRLE-LP-VQGQHMAIVDDVVTTGSTVAEIAQLLLRNGAASVQVWCLCRT 226 (227)
T ss_pred ccCCHHHHhhhhhhhhccC-CC-CCCCEEEEEeeeecchHHHHHHHHHHHHcCCcEEEEEEEEec
Confidence 3233233333334455542 33 489999999999999999999999999999999999999753
No 50
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=99.67 E-value=2.6e-15 Score=121.58 Aligned_cols=135 Identities=21% Similarity=0.243 Sum_probs=93.7
Q ss_pred hcCHHHHHHHHHHHHHHHhhc---CCcEEEEecCCccchHHHHHHHhCC---CeE--EeecCCCCCCceeeeeeeeecCc
Q 028297 64 LLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGA---KFV--PLRKPNKLPGEVISEAYVLEYGT 135 (211)
Q Consensus 64 ~~~~~~~~~~~~~la~~i~~~---~~d~Iv~i~~gG~~~A~~lA~~L~~---p~~--~~~k~~~~~~~~~~~~~~~~~~~ 135 (211)
+-+++..+...+.+|.++.+. ..++|+|+..||+++|..+++.|+. |+. .++..+...+.. .+
T Consensus 11 lis~~~I~~~i~~lA~~I~~~~~~~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi~~~sy~~~~~---------~~ 81 (189)
T PLN02238 11 LWTAEDISARVAELAAQIASDYAGKSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFIRASSYGGGTE---------SS 81 (189)
T ss_pred EcCHHHHHHHHHHHHHHHHHHcCCCCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEEEeeecCCCcc---------cc
Confidence 445555666666677777553 3589999999999999999999998 663 244322111110 01
Q ss_pred eeEEEec---CCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCchhhc----ccCCCCeEEEEcccc
Q 028297 136 DRLEMHV---GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQR----RLDGKPLYILVEPRL 207 (211)
Q Consensus 136 ~~~~~~~---~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~~~~----~l~~~~l~sl~~~~~ 207 (211)
+...+.. ....+||+|||||||+|||.|+.++++.|++.|++++.++|+++++..++ ..++.|=+.-+++++
T Consensus 82 g~~~i~~~~~~~~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~~~v~~avL~dK~~~r~~~~~~~~~~~d~~G~~ipd 160 (189)
T PLN02238 82 GVAKVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGAASVSVCALLDKRARRKVKYELVGDGKEYVGFECPD 160 (189)
T ss_pred CceeEecCCCCCCCCCCEEEEEecccchHHHHHHHHHHHHhCCCCEEEEEEEEECCccccCCccCCCCCceEEEEecCC
Confidence 1122211 22359999999999999999999999999999999999999999986322 122446666666554
No 51
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.62 E-value=6.4e-15 Score=118.16 Aligned_cols=118 Identities=14% Similarity=0.234 Sum_probs=84.8
Q ss_pred cCHHHHHHHHHHHHHHHhhc-----CCcEEEEecCCccchHHHHHHHhCCCeE--EeecCCCCCCceeeeeeeeecCcee
Q 028297 65 LDHKAFKDTVDIFVDRYRDM-----GISVVAGIEARGFVFGPSIALAIGAKFV--PLRKPNKLPGEVISEAYVLEYGTDR 137 (211)
Q Consensus 65 ~~~~~~~~~~~~la~~i~~~-----~~d~Iv~i~~gG~~~A~~lA~~L~~p~~--~~~k~~~~~~~~~~~~~~~~~~~~~ 137 (211)
-+.+..+...+.+|.++.+. ...+++||..||+.+|..|++.|+.|.. .++..+...+... .+.
T Consensus 9 ~~~~~i~~~i~~lA~~I~~~~~~~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~ssY~~~~~~---------~~~ 79 (178)
T PRK15423 9 IPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTASSYGSGMST---------TRD 79 (178)
T ss_pred cCHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEEEecCCCcc---------cCc
Confidence 34455555566666666432 2369999999999999999999999853 4443322111100 111
Q ss_pred EEEe--cCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCchhh
Q 028297 138 LEMH--VGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQ 191 (211)
Q Consensus 138 ~~~~--~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~~~ 191 (211)
..+. .....+||+|||||||++||.||.++.+.|++.|++++.++++++++.++
T Consensus 80 v~i~~~~~~~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~~~v~~avL~~K~~~r 135 (178)
T PRK15423 80 VKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRR 135 (178)
T ss_pred eEEecCCCCCCCCCEEEEEeeecCchHHHHHHHHHHHhCCCCEEEEEEEEECCCCC
Confidence 2222 12235999999999999999999999999999999999999999998643
No 52
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=99.61 E-value=1.3e-14 Score=114.01 Aligned_cols=114 Identities=23% Similarity=0.308 Sum_probs=83.6
Q ss_pred cCHHHHHHHHHHHHHHHhhc-CCcEEEEecCCccchHHHHHHHhCCCeEE-eecCCCCCCceeeeeeeeecCceeEEEec
Q 028297 65 LDHKAFKDTVDIFVDRYRDM-GISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMHV 142 (211)
Q Consensus 65 ~~~~~~~~~~~~la~~i~~~-~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (211)
-+.+.....++.++.++.+. ++|+|+|+++||+.+|..++++|++|+.. ++-. +|..+ .++.+.+..
T Consensus 10 is~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~s----------sY~~~-~~~~~~~~~ 78 (156)
T PRK09177 10 VSWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILARELGIRLVDTVCIS----------SYDHD-NQGELKVLK 78 (156)
T ss_pred cCHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHHcCCCceeEEEEE----------EECCC-cCCcEEEec
Confidence 45566677888888888765 47999999999999999999999999642 2110 11100 112233333
Q ss_pred CCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCchhhccc
Q 028297 143 GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRL 194 (211)
Q Consensus 143 ~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~~~~~l 194 (211)
+...+|++||||||+++||.|+.++.+.+++ +.+++++.++.++.+.
T Consensus 79 ~~~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~-----v~~a~l~~K~~~~~~~ 125 (156)
T PRK09177 79 RAEGDGEGFLVVDDLVDTGGTARAVREMYPK-----AHFATVYAKPAGRPLV 125 (156)
T ss_pred CCCcCcCEEEEEeeeeCCHHHHHHHHHHHhh-----CCEEEEEECcCCCCCC
Confidence 3346999999999999999999999999974 6788899888654443
No 53
>PRK05793 amidophosphoribosyltransferase; Provisional
Probab=99.59 E-value=8.3e-15 Score=133.39 Aligned_cols=135 Identities=19% Similarity=0.177 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEE-eecCCCCCCceeeeeeeeecCceeEEEe-cCCcCC
Q 028297 70 FKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMH-VGAIEP 147 (211)
Q Consensus 70 ~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 147 (211)
...+++.|++.+.. +.|+|+++|.+|.++|..+|+.+|+|+.. +.+.+.........+...+....++... .....+
T Consensus 274 R~~~G~~La~~~~~-~~D~Vv~vPdsg~~~A~~~A~~lgip~~~~l~r~~~~~rtfi~~~q~~R~~~~~~k~~~~~~~v~ 352 (469)
T PRK05793 274 RVRAGRQLYKEYPV-DADIVIGVPDSGIPAAIGYAEASGIPYGIGFIKNKYVGRTFIAPSQELRERAVRVKLNPLKVNVE 352 (469)
T ss_pred HHHHHHHHHHhcCC-CCCEEEEcCccHHHHHHHHHHHhCCCEeeeEEEeeeccccccChhHhhhhhhheEecccCccccC
Confidence 34778888877643 67899999999999999999999999965 2222211000010000000001122211 112358
Q ss_pred CCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch--hhcccCCCCeEEEEcc
Q 028297 148 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE--GQRRLDGKPLYILVEP 205 (211)
Q Consensus 148 gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~--~~~~l~~~~l~sl~~~ 205 (211)
||+||||||+++||+|+.++++.|+++||++|++++.|.... ....++-.+..+|+..
T Consensus 353 gk~VlLVDD~ItTGtTl~~~~~~Lr~aGAk~V~~~~~~p~~~~p~~~gid~~~~~elia~ 412 (469)
T PRK05793 353 GKRVVLIDDSIVRGTTSKRLVELLRKAGAKEVHFRVSSPPVKYPCYFGIDTPYRKELIGA 412 (469)
T ss_pred CCEEEEEccccCchHHHHHHHHHHHHcCCCEEEEEEECCCcCcchhhhccCCChhhEEEc
Confidence 999999999999999999999999999999999999998765 4444444445555543
No 54
>PRK09246 amidophosphoribosyltransferase; Provisional
Probab=99.58 E-value=6.4e-15 Score=135.14 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEE--eecCCCCCC-ceeeeeeeeecCceeEEEecC
Q 028297 67 HKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNKLPG-EVISEAYVLEYGTDRLEMHVG 143 (211)
Q Consensus 67 ~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~--~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 143 (211)
..+.+.+++.+...+...+.|+|+++|.+|..+|..+|+.+++|+.. ++++..... ....+..+..+.+.+|....
T Consensus 275 ~~lg~~LA~~l~~~~~~~~~D~VvpVP~s~~~~A~~la~~lgip~~~~l~k~~~~~rt~i~~~q~~R~~~vr~~f~~~~- 353 (501)
T PRK09246 275 LRMGEKLAEKIKREWPDLDIDVVIPIPDTSRDAALEIARILGVPYREGFVKNRYVGRTFIMPGQAQRKKSVRQKLNAIR- 353 (501)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEeCccHHHHHHHHHHHHCCCccceEEEEecccccccCcCHHHHHHHHHhhcCCcc-
Confidence 34445555555444443357999999999999999999999999853 332221111 00111111112223443222
Q ss_pred CcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEe
Q 028297 144 AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVG 186 (211)
Q Consensus 144 ~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~ 186 (211)
...+||+||||||++|||+|+.++++.|+++||+.|++++++.
T Consensus 354 ~~v~gK~VlLVDDvitTGaTl~~~~~~L~~aGA~~V~v~v~ap 396 (501)
T PRK09246 354 AEFKGKNVLLVDDSIVRGTTSEQIVQMAREAGAKKVYFASAAP 396 (501)
T ss_pred ccccCCeEEEEeccccccHHHHHHHHHHHHcCCCEEEEEEEcc
Confidence 2358999999999999999999999999999999999999964
No 55
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.58 E-value=3.1e-14 Score=114.00 Aligned_cols=119 Identities=21% Similarity=0.250 Sum_probs=82.5
Q ss_pred hcCHHHHHHHHHHHHHHHhhc----CCcEEEEecCCccchHHHHHHHh----CCC--eEEeecCCCCCCceeeeeeeeec
Q 028297 64 LLDHKAFKDTVDIFVDRYRDM----GISVVAGIEARGFVFGPSIALAI----GAK--FVPLRKPNKLPGEVISEAYVLEY 133 (211)
Q Consensus 64 ~~~~~~~~~~~~~la~~i~~~----~~d~Iv~i~~gG~~~A~~lA~~L----~~p--~~~~~k~~~~~~~~~~~~~~~~~ 133 (211)
+-+++..+...+.++.++.+. ..++|+|+..||+++|..+++.| +.| +..++......+... ..
T Consensus 6 l~s~~~i~~~i~~la~~i~~~~~~~~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~l~~~~y~~~~~~------~~ 79 (176)
T PRK05205 6 ILDAEALRRALTRIAHEIIERNKGLDNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGELDITLYRDDLTK------KG 79 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccceEEEEEeecCccc------cC
Confidence 346677777788888887653 36899999999999999999999 544 333322110000000 00
Q ss_pred CceeEE-EecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCC-CeEEEEEEEEeCc
Q 028297 134 GTDRLE-MHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMG-AEVVECACVVGLP 188 (211)
Q Consensus 134 ~~~~~~-~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~G-a~~V~v~~~~~~~ 188 (211)
...... .......+|++|||||||++||+|+.++++.|++.| ++.+.+++++++.
T Consensus 80 ~~~~~~~~~l~~~v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~~~v~~avL~~K~ 136 (176)
T PRK05205 80 LHPQVKPTDIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYGRPARVQLAVLVDRG 136 (176)
T ss_pred cccccccccCCCCCCCCEEEEEecccCcHHHHHHHHHHHHhcCCCcEEEEEEEEECC
Confidence 000110 011222589999999999999999999999999999 7899999999874
No 56
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=99.57 E-value=3.9e-15 Score=134.69 Aligned_cols=140 Identities=19% Similarity=0.189 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEE-eecCCCCCCcee---eeeeeeecCceeEEEecC
Q 028297 68 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVI---SEAYVLEYGTDRLEMHVG 143 (211)
Q Consensus 68 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~-~~k~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 143 (211)
.....+++.||+... .++|+|+++|.+|+++|..+|+.+|+|+.. +.|.+. .+.+. .+..+....+..+....
T Consensus 257 ~~R~~~g~~La~~~~-~~~D~Vv~VP~sg~~~A~~la~~lgip~~~~l~r~~~-~~r~~i~~~q~~R~~~v~~k~~~~~- 333 (442)
T TIGR01134 257 KARKRMGEKLARESP-VEADVVIPVPDSGRSAALGFAQASGIPYREGLIKNRY-VGRTFIMPTQELRELSVRLKLNPIR- 333 (442)
T ss_pred HHHHHHHHHHHHhcC-CCCEEEEEccCCHHHHHHHHHHHhCCCchHHeEEecc-ccccccCCCHHHHHHHHhhhccccc-
Confidence 334478888887643 368999999999999999999999999864 333221 11111 00011111122332222
Q ss_pred CcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEE-----------EeCchhhccc---------C---CCCeE
Q 028297 144 AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV-----------VGLPEGQRRL---------D---GKPLY 200 (211)
Q Consensus 144 ~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~-----------~~~~~~~~~l---------~---~~~l~ 200 (211)
...+||+||||||++|||+|+.+++++|+++||++|++.+. .+.++-.|.+ . |.+.-
T Consensus 334 ~~~~gk~v~lvDD~ittG~T~~~~~~~l~~~ga~~v~~~~~spp~~~pc~yg~d~~~~~el~~~~~~~~~i~~~~~~~~l 413 (442)
T TIGR01134 334 EVFRGKRVVLVDDSIVRGTTSRQIVKMLRDAGAKEVHVRIASPPIRYPCYYGIDMPTREELIANGRTVEEIAKEIGADSL 413 (442)
T ss_pred ccCCCCEEEEEeccccccHHHHHHHHHHHHcCCcEEEEEEccCCccCCcccccCCCCHHHHhhcCCCHHHHHHHhCCCEE
Confidence 23589999999999999999999999999999999998776 4444311111 1 66777
Q ss_pred EEEccccccc
Q 028297 201 ILVEPRLSVN 210 (211)
Q Consensus 201 sl~~~~~~~~ 210 (211)
+.++++++.+
T Consensus 414 ~~~~~~~l~~ 423 (442)
T TIGR01134 414 AYLSLEGLKE 423 (442)
T ss_pred EEecHHHHHH
Confidence 7777777654
No 57
>PRK07272 amidophosphoribosyltransferase; Provisional
Probab=99.57 E-value=3.5e-15 Score=135.88 Aligned_cols=138 Identities=16% Similarity=0.208 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEE-eecCCCCCCce--eeeeeeeecCceeEEEecCCcCC
Q 028297 71 KDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEV--ISEAYVLEYGTDRLEMHVGAIEP 147 (211)
Q Consensus 71 ~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~-~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 147 (211)
..+++.|++.+.. +.|+|+++|..|..+|..+|+.+|+|+.. +.|.+...... ..+..+..+.+..|.... ...+
T Consensus 272 ~~lg~~La~~~~~-~~D~VvpVPnqa~~lA~~la~~lgip~~~~lvk~~~~~rt~~~~~q~~R~~~vr~~f~~~~-~~~~ 349 (484)
T PRK07272 272 KRMGKRLAQEFPH-DADIVIGVPNSSLSAASGYAEESGLPYEMGLVKNQYVARTFIQPTQELREQGVRMKLSAVS-GVVK 349 (484)
T ss_pred HHHHHHHHhhcCC-CCCEEEEecHHHHHHHHHHHHHHCCCcccCeEEEccCCccccCCCHHHHHHHHhhCccccc-cccC
Confidence 4777777766543 57999999999999999999999999843 22222111111 111112222233454322 3459
Q ss_pred CCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEE-----------EeCchhh---------cccC---CCCeEEEEc
Q 028297 148 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV-----------VGLPEGQ---------RRLD---GKPLYILVE 204 (211)
Q Consensus 148 gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~-----------~~~~~~~---------~~l~---~~~l~sl~~ 204 (211)
||+|+||||++|||+|+.+++++|+++||+.|++++. .+.++-. +.+. |.+.-+.++
T Consensus 350 gk~vllVDDvittG~T~~~~~~~L~~~Ga~~v~~~~~~p~~~~~c~ygid~~~~~~lia~~~~~~ei~~~~~~dsl~~~~ 429 (484)
T PRK07272 350 GKRVVMVDDSIVRGTTSRRIVQLLKEAGAKEVHVAIASPELKYPCFYGIDIQTRRELISANHSVEEICDIIGADSLTYLS 429 (484)
T ss_pred CCEEEEEccccCchHHHHHHHHHHHhcCCcEEEEEEeCCccccChhhhccCcCHHHHHhcCCCHHHHHHHhCCCEEEEec
Confidence 9999999999999999999999999999999999999 4444311 1111 677777777
Q ss_pred cccccc
Q 028297 205 PRLSVN 210 (211)
Q Consensus 205 ~~~~~~ 210 (211)
++++.+
T Consensus 430 ~~~l~~ 435 (484)
T PRK07272 430 VDGLIE 435 (484)
T ss_pred HHHHHH
Confidence 777665
No 58
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=99.55 E-value=9.6e-14 Score=113.94 Aligned_cols=120 Identities=13% Similarity=0.171 Sum_probs=84.8
Q ss_pred HHhcCHHHHHHHHHHHHHHHhhc---------CCcEEEEecCCccchHHHHHHHhC---CCeEE--eecCCCCCCceeee
Q 028297 62 TLLLDHKAFKDTVDIFVDRYRDM---------GISVVAGIEARGFVFGPSIALAIG---AKFVP--LRKPNKLPGEVISE 127 (211)
Q Consensus 62 ~l~~~~~~~~~~~~~la~~i~~~---------~~d~Iv~i~~gG~~~A~~lA~~L~---~p~~~--~~k~~~~~~~~~~~ 127 (211)
..+-+++..+...+.+|.+|.+. ++++|+|+..||+.+|..|++.|+ .|+.. ++-.....+.
T Consensus 25 ~~lis~e~I~~~i~~LA~~I~~~~~~~~~~~~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi~vssY~~~~---- 100 (211)
T PTZ00271 25 HTLVTQEQVWAATAKCAKKIAEDYRSFKLTTENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICASSYGTGV---- 100 (211)
T ss_pred cEecCHHHHHHHHHHHHHHHHHHhhhccccCCCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEEEEEecCCCC----
Confidence 34456666666666777666542 256899999999999999999996 56422 2211110010
Q ss_pred eeeeecCceeEEEe--cCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCchh
Q 028297 128 AYVLEYGTDRLEMH--VGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEG 190 (211)
Q Consensus 128 ~~~~~~~~~~~~~~--~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~~ 190 (211)
..++.+.+. ....++||+|||||||++||.||.++.+.|++.|++.+.++++++++..
T Consensus 101 -----~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p~svk~avL~dK~~~ 160 (211)
T PTZ00271 101 -----ETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPSG 160 (211)
T ss_pred -----cccCceEEecCCCCCCCCCEEEEEecccCCHHHHHHHHHHHHhcCCCEEEEEEEEEcccC
Confidence 011122221 1223589999999999999999999999999999999999999999764
No 59
>PLN02440 amidophosphoribosyltransferase
Probab=99.54 E-value=3.1e-14 Score=129.96 Aligned_cols=115 Identities=22% Similarity=0.251 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEE--eecCCCCCCceeeeeeeeecCceeEEEec-CCcC
Q 028297 70 FKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNKLPGEVISEAYVLEYGTDRLEMHV-GAIE 146 (211)
Q Consensus 70 ~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~--~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 146 (211)
...+++.|++.+.. ++|+|+++|.+|+.+|..+|+.+++|+.. +|.+.. ................++.... ....
T Consensus 261 r~~~g~~La~~~~~-~~d~vvpVP~s~~~~A~~la~~lgiP~~~~lvr~ry~-~rt~i~~~q~~r~~~~~~k~~~~~~~v 338 (479)
T PLN02440 261 RLEFGEILATEIPV-DCDVVIPVPDSGRVAALGYAAKLGVPFQQGLIRSHYV-GRTFIEPSQKIRDFSVKLKLNPVRSVL 338 (479)
T ss_pred HHHHHHHHHHhcCC-CCCEEEEeCCcHHHHHHHHHHHhCCCchhheEEEeec-cccccCcchhhhhhhheeeeecccccc
Confidence 34677777776643 68999999999999999999999999853 332221 1111101111111111222211 1235
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEe
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVG 186 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~ 186 (211)
+||+||||||++|||+|+.++++.|+++||++|+++++..
T Consensus 339 ~gk~VlLVDDiittGtTl~~i~~~L~~aGa~~V~v~v~~p 378 (479)
T PLN02440 339 EGKRVVVVDDSIVRGTTSSKIVRMLREAGAKEVHMRIASP 378 (479)
T ss_pred cCceEEEEeceeCcHHHHHHHHHHHHhcCCCEEEEEEECC
Confidence 9999999999999999999999999999999999999873
No 60
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=99.53 E-value=2.3e-14 Score=130.36 Aligned_cols=117 Identities=20% Similarity=0.158 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEE--eecCCCC-CCceeeeeeeeecCceeEEEecCC
Q 028297 68 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNKL-PGEVISEAYVLEYGTDRLEMHVGA 144 (211)
Q Consensus 68 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~--~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 144 (211)
.....+++.||+... .++|+|+++|..|...|..+|+.+|+|+.. +++++.. +.....+..+..+.+..|.... .
T Consensus 267 ~~R~~~G~~La~~~~-~~~D~vv~VP~s~~~~A~~~a~~~gip~~~~lik~~~~~rt~~~~~~~~R~~~v~~~f~~~~-~ 344 (471)
T PRK06781 267 AARKNMGKRLAAEAP-IEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVR-G 344 (471)
T ss_pred HHHHHHHHHHhhhCC-CCCcEEEEcChhHHHHHHHHHHHhCCCcccceEEEccCCCCCcCCCHHHHHHHHhcceeccc-c
Confidence 444588888887654 368999999999999999999999999864 3332211 1111111122223344555333 3
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEe
Q 028297 145 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVG 186 (211)
Q Consensus 145 ~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~ 186 (211)
..+||+|+||||++|||+|+.+++++|+++||++|++.....
T Consensus 345 ~i~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sP 386 (471)
T PRK06781 345 VVEGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASP 386 (471)
T ss_pred ccCCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCC
Confidence 458999999999999999999999999999999999887653
No 61
>PRK07349 amidophosphoribosyltransferase; Provisional
Probab=99.52 E-value=5.4e-14 Score=128.49 Aligned_cols=116 Identities=17% Similarity=0.185 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEE-eecCCCCCCceeee--eeeeecCceeEEEecCC
Q 028297 68 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISE--AYVLEYGTDRLEMHVGA 144 (211)
Q Consensus 68 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~-~~k~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 144 (211)
.....+++.||+... .++|+|+++|.+|+++|..+|+.+|+|+.. +.|.+......... ..+....+..+.. ...
T Consensus 296 ~~R~~~G~~La~~~~-~~~DvVv~VP~sg~~~A~g~A~~lgip~~~~L~r~~y~grtfi~p~q~~R~~~~~~kl~~-~~~ 373 (500)
T PRK07349 296 SYRQRLGQQLAKESP-VDADLVIGVPDSGIPAAIGFSQASGIPYAEGLIKNRYVGRTFIQPTQSMRESGIRMKLNP-LKD 373 (500)
T ss_pred HHHHHHHHHHhhhcc-cCCcEEEEeccccHHHHHHHHHHHCCCchhceEEEeccCccccCCCHHHHHhhhheeeec-ccc
Confidence 344577888875543 368999999999999999999999999964 22222110000000 0010011112211 123
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEE
Q 028297 145 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 185 (211)
Q Consensus 145 ~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~ 185 (211)
..+||+||||||++|||+|+.+++++|+++||++|++....
T Consensus 374 ~~~gkrVlLVDDvIttGtTl~~~~~~Lr~aGAkeV~~~i~s 414 (500)
T PRK07349 374 VLAGKRIIIVDDSIVRGTTSRKIVKALRDAGATEVHMRISS 414 (500)
T ss_pred ccCCCEEEEEeceeCCcHHHHHHHHHHHHhCCeEEEEEeCC
Confidence 35899999999999999999999999999999999877543
No 62
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.50 E-value=4.9e-13 Score=105.32 Aligned_cols=120 Identities=20% Similarity=0.308 Sum_probs=86.0
Q ss_pred HhcCHHHHHHHHHHHHHHHhhc---CCcEEEEecCCccchHHHHHHHhCCCeEE--eecCCCCCCceeeeeeeeecCcee
Q 028297 63 LLLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNKLPGEVISEAYVLEYGTDR 137 (211)
Q Consensus 63 l~~~~~~~~~~~~~la~~i~~~---~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~--~~k~~~~~~~~~~~~~~~~~~~~~ 137 (211)
.+-+.+..+.-.+.+++++.+. +..+++|+-.|+++++..|.++++.|... +.-... .+.+. +++.
T Consensus 10 vLisee~I~~ri~ela~~I~~~y~g~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSY-g~~t~--------ssg~ 80 (178)
T COG0634 10 VLISEEQIKARIKELAAQITEDYGGKDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSY-GGGTS--------SSGE 80 (178)
T ss_pred EeeCHHHHHHHHHHHHHHHHHhhCCCceEEEEEcccchhhHHHHHHhcCCCceeEEEEEecc-CCCcc--------cCCc
Confidence 3344555555556666666543 45699999999999999999999988643 221111 11111 1122
Q ss_pred EEEec--CCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCchhh
Q 028297 138 LEMHV--GAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQ 191 (211)
Q Consensus 138 ~~~~~--~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~~~ 191 (211)
+.+.. +...+||+|||||||++||.||..+.+.|+..||+++.++++.+++..+
T Consensus 81 v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~~l~~r~a~sv~i~tLldK~~~r 136 (178)
T COG0634 81 VKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATLLDKPERR 136 (178)
T ss_pred eEEecccccCCCCCeEEEEecccccChhHHHHHHHHHhCCCCeEEEEEEeeCcccc
Confidence 33322 2346999999999999999999999999999999999999999999743
No 63
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=99.50 E-value=9.9e-14 Score=125.29 Aligned_cols=115 Identities=19% Similarity=0.185 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEE-eecCCCCCCceeeeeeeeecCceeEEEe-cCCc
Q 028297 68 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMH-VGAI 145 (211)
Q Consensus 68 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 145 (211)
.....+++.|++.... ++|+|+++|..|..+|..+|+.+|+|+.. +.|.+...........+. ....+.+. ....
T Consensus 255 ~~R~~~G~~La~~~~~-~~D~Vv~VPdsg~~~A~~~a~~lgip~~~~l~k~r~~~rtfi~~~qr~--~~~~~k~~~~~~~ 331 (442)
T PRK08341 255 SARYRMGVELARESPA-EGDVVIAVPDSGRTAALGFAHESGIPYMEGLIKNRYIGRTFIMPSGRE--LKVKLKLSPVREV 331 (442)
T ss_pred HHHHHHHHHhhcccCC-CCceEEEecCchHHHHHHHHHHhCCCchheEEEeccccccccCcCchh--hhheeeecccccc
Confidence 3444888888876543 57999999999999999999999999964 444332111111010111 11122211 1223
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 185 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~ 185 (211)
.+||+|+||||++|||+|+.+++++|+++||++|++....
T Consensus 332 v~gk~VlLVDD~IttGtTl~~~~~~L~~aGAk~V~~~~~s 371 (442)
T PRK08341 332 INGKRVVLVDDSIVRGTTMKRIVKMLRDAGAREVHVRIAS 371 (442)
T ss_pred cCCCEEEEEeeeeccHHHHHHHHHHHHhcCCcEEEEEEcC
Confidence 5899999999999999999999999999999999988754
No 64
>PRK09123 amidophosphoribosyltransferase; Provisional
Probab=99.49 E-value=2e-13 Score=124.49 Aligned_cols=114 Identities=19% Similarity=0.190 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEE--eecCCCCCCceeeeeeeeecCceeEEEe-cCC
Q 028297 68 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNKLPGEVISEAYVLEYGTDRLEMH-VGA 144 (211)
Q Consensus 68 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~--~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 144 (211)
.+.+.+++.|++.... ++|+|+++|.+|+++|..+|+.+++|+.. +|.+.. ...........+...-++... ...
T Consensus 279 ~~R~~~g~~La~~~~~-~~D~Vv~VP~sg~~~A~~la~~lgip~~~~lir~~y~-grt~i~~~q~~r~~~v~~k~~~~~~ 356 (479)
T PRK09123 279 EVRKNIGRELARESPV-DADVVVPVPDSGVPAAIGYAQESGIPFELGIIRNHYV-GRTFIQPTQQIRNLGVKLKHNANRA 356 (479)
T ss_pred HHHHHHHHHHHHhCCC-CCeEEEEcCccHHHHHHHHHHhcCCCeeheEEEEeec-CccccccccccccccEEEEeccccc
Confidence 5556888888877643 68999999999999999999999999963 443221 111010000001111112111 123
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEE
Q 028297 145 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 183 (211)
Q Consensus 145 ~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~ 183 (211)
..+||+||||||+++||+|+.++++.|+++||++|++++
T Consensus 357 ~~~gk~vvlvDD~i~tG~Tl~~~~~~l~~~Ga~~v~~~~ 395 (479)
T PRK09123 357 VIEGKRVVLVDDSIVRGTTSRKIVQMLRDAGAKEVHLRI 395 (479)
T ss_pred ccCCCEEEEEeceeCchHHHHHHHHHHHHcCCCEEEEEE
Confidence 358999999999999999999999999999999999988
No 65
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=99.48 E-value=4.3e-13 Score=112.02 Aligned_cols=119 Identities=18% Similarity=0.224 Sum_probs=85.5
Q ss_pred HHHhcCHHHHHHHHHHHHHHHhhc---CCcEEEEecCCccchHHHHHHHhCC---------Ce-----EEeecCCCCCCc
Q 028297 61 TTLLLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIGA---------KF-----VPLRKPNKLPGE 123 (211)
Q Consensus 61 ~~l~~~~~~~~~~~~~la~~i~~~---~~d~Iv~i~~gG~~~A~~lA~~L~~---------p~-----~~~~k~~~~~~~ 123 (211)
...+-+.+..+...+.+|.+|.+. +..+|+|+..||+.++..|.+.|+. |. ..++-
T Consensus 54 ~~vLis~~~I~~rI~~LA~~I~~dy~~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~~~~~~~dfi~v------- 126 (241)
T PTZ00149 54 TKILLPNGLIKDRVEKLAYDIKQVYGNEELHILCILKGSRGFFSALVDYLNRIHNYSSTESPKPPYQEHYVRV------- 126 (241)
T ss_pred cEEEeCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccCcccccccEEEE-------
Confidence 344556677777778888887653 3469999999999999999998872 21 11211
Q ss_pred eeeeeeeeecCceeEEEecC--CcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch
Q 028297 124 VISEAYVLEYGTDRLEMHVG--AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 189 (211)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~--~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~ 189 (211)
.+|+.....+.+.+... ...+||+|||||||++||.|+.++++.|++.|++.+.+++++.+..
T Consensus 127 ---sSY~~~~s~g~v~i~~~~~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~~~V~va~L~~K~~ 191 (241)
T PTZ00149 127 ---KSYCNDESTGKLEIVSDDLSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEPKTIRIATLFEKRT 191 (241)
T ss_pred ---EEccCCCcCCceEEecccccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCCCEEEEEEEEecCc
Confidence 11211111122222211 2259999999999999999999999999999999999999998875
No 66
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.48 E-value=1.3e-13 Score=111.21 Aligned_cols=111 Identities=18% Similarity=0.333 Sum_probs=78.9
Q ss_pred cCHHHHHHHHHHHHHHHhhc--CCcEEEEecCCccchHHHHHHHhCC-CeEEeecC-CCCCCceeeeeeeeecCceeEEE
Q 028297 65 LDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGA-KFVPLRKP-NKLPGEVISEAYVLEYGTDRLEM 140 (211)
Q Consensus 65 ~~~~~~~~~~~~la~~i~~~--~~d~Iv~i~~gG~~~A~~lA~~L~~-p~~~~~k~-~~~~~~~~~~~~~~~~~~~~~~~ 140 (211)
-+.+..+..+..+|+++.+. .+|+|+++.+||+.+|+.|+..|++ |+..+.-. ....++.. +...+.-
T Consensus 7 vSw~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~--------~~~~v~~ 78 (192)
T COG2236 7 VSWEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERD--------GEAKVKY 78 (192)
T ss_pred ecHHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccC--------Ccceeec
Confidence 45677788899999999754 7899999999999999999999998 66554321 11111000 0001111
Q ss_pred --ecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEE
Q 028297 141 --HVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 184 (211)
Q Consensus 141 --~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~ 184 (211)
..+. ..||+|||||||.+||.||..|.+.|++.....+..+++
T Consensus 79 ~~~~d~-l~GkkVLIVDDI~DTG~Tl~~a~~~l~~~~p~e~rta~l 123 (192)
T COG2236 79 PITIDP-LSGKKVLIVDDIVDTGETLELALEELKKLAPAEVRTAVL 123 (192)
T ss_pred Cccccc-cCCCeEEEEecccCchHhHHHHHHHHHhhCchhhhhhhh
Confidence 1122 599999999999999999999999999955555554444
No 67
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=99.48 E-value=7.8e-14 Score=126.83 Aligned_cols=117 Identities=19% Similarity=0.129 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEE--eecCCCC-CCceeeeeeeeecCceeEEEecCC
Q 028297 68 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNKL-PGEVISEAYVLEYGTDRLEMHVGA 144 (211)
Q Consensus 68 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~--~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 144 (211)
.....+++.||+... .+.|+|+++|..|..+|..+|+.+|+|+.. +++++.. +.....+..+..+.+..|... ..
T Consensus 267 ~~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~gla~~~gip~~~~lik~~~~~Rt~i~~~~~~R~~nv~~~f~~~-~~ 344 (475)
T PRK07631 267 TARKNLGKRLALEAP-VEADVVTGVPDSSISAAIGYAEATGIPYELGLIKNRYVGRTFIQPSQALREQGVKMKLSPV-RG 344 (475)
T ss_pred HHHHHHHHHHHhhCC-CCCcEEEEechhHHHHHHHHHHHHCCCcccceEEEecCCCCCcCCCHHHHHHHHhhhhhhc-cc
Confidence 344588888887653 367999999999999999999999999954 3322211 111111111222223344432 23
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEe
Q 028297 145 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVG 186 (211)
Q Consensus 145 ~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~ 186 (211)
..+||+|+||||++|||+|+.+++++|+++||++|++.....
T Consensus 345 ~v~gk~VlLVDDsittGtTl~~~~~~L~~aGA~eV~v~~~sP 386 (475)
T PRK07631 345 VVEGKRVVMVDDSIVRGTTSRRIVTMLREAGATEVHVRISSP 386 (475)
T ss_pred ccCCceEEEEeeeeccHHHHHHHHHHHHHcCCCEEEEEEeCC
Confidence 458999999999999999999999999999999998887653
No 68
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=99.47 E-value=3.2e-13 Score=122.87 Aligned_cols=117 Identities=16% Similarity=0.204 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEE-eec-CCCCCCceeeeeeeeecCceeEEEe-cCC
Q 028297 68 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRK-PNKLPGEVISEAYVLEYGTDRLEMH-VGA 144 (211)
Q Consensus 68 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~-~~k-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 144 (211)
.....+++.|++... .+.|+|+++|..|.++|..+|+.+|+|+.. +.| +....+... .....+...-++.+. ...
T Consensus 275 ~~R~~~G~~La~~~~-~~~D~VvpVP~s~~~~A~g~a~~~gip~~~~L~r~r~~~r~fi~-~~q~~R~~~~~~kl~~~~~ 352 (474)
T PRK06388 275 QARVRMGMRLAKESP-VEADVVVPVPDSGRSQAIGFSMASGIPYTEGLIKNRYSERTFIM-PTQSDRKAAIKLKLNPIRE 352 (474)
T ss_pred HHHHHHHHHHHhhcc-CCCcEEEeeCCCcHHHHHHHHHHhCCCchhheEEecccCCcccC-CchhhhhhceeEEeccccc
Confidence 344478888887653 367999999999999999999999999954 233 322111111 000000111122211 122
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEe
Q 028297 145 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVG 186 (211)
Q Consensus 145 ~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~ 186 (211)
..+||+||||||++|||+|+.+++++|+++||++|++.....
T Consensus 353 ~i~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~sP 394 (474)
T PRK06388 353 VISGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSP 394 (474)
T ss_pred cccCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 358999999999999999999999999999999998876543
No 69
>PRK07847 amidophosphoribosyltransferase; Provisional
Probab=99.45 E-value=4.7e-13 Score=122.64 Aligned_cols=117 Identities=21% Similarity=0.218 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEE-eecCCCCCCceeeeeeeeecCceeEEEe-cCCc
Q 028297 68 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMH-VGAI 145 (211)
Q Consensus 68 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 145 (211)
.....+++.||+... .+.|+|+++|.+|+++|..+|+.+|+|+.. +.|.+.............+...-++... ....
T Consensus 286 ~~R~~~G~~La~~~~-~~~D~VvpVP~sG~~~A~g~a~~~gip~~~~l~kn~~~grtfi~~~q~~r~~~~r~k~~~~~~~ 364 (510)
T PRK07847 286 AARVEIGRRLAREHP-VEADLVIPVPESGTPAAVGYAQESGIPFGQGLVKNAYVGRTFIQPSQTIRQLGIRLKLNPLREV 364 (510)
T ss_pred HHHHHHHHHHHhhCC-CCCeEEEeccCchHHHHHHHHHHhCCChhhceEeecccccCccCcchhhhhhceeeecCccccc
Confidence 444588888887653 367999999999999999999999999855 3332111000000000000000011110 1233
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 185 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~ 185 (211)
.+||+||||||++|||+|+.++++.|+++||+.|++....
T Consensus 365 ~~gk~vllVDD~ittG~T~~~~~~~L~~~ga~~v~~ri~s 404 (510)
T PRK07847 365 IRGKRLVVVDDSIVRGNTQRALVRMLREAGAAEVHVRISS 404 (510)
T ss_pred cCCCEEEEEecccCchHHHHHHHHHHHHcCCCEEEEEECC
Confidence 5999999999999999999999999999999998876554
No 70
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=99.33 E-value=1.7e-11 Score=100.81 Aligned_cols=99 Identities=23% Similarity=0.327 Sum_probs=74.8
Q ss_pred cEEEEecCCccchHHHHHHHhC-CCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHH
Q 028297 87 SVVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLS 165 (211)
Q Consensus 87 d~Iv~i~~gG~~~A~~lA~~L~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~ 165 (211)
-++|++.++|++++..+++.++ +++..+...+... .. +........+...+|++||||||+++||+|+.
T Consensus 72 ~vvV~IlrgG~~~~~~l~~~l~~~~~~~i~~~r~~~-t~---------~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~ 141 (209)
T PRK00129 72 LVIVPILRAGLGMVDGVLKLIPSARVGHIGLYRDEE-TL---------EPVEYYVKLPEDIDERTVIVVDPMLATGGSAI 141 (209)
T ss_pred EEEEEEeCCCHHHHHHHHHhCCcCeeeeEEEEeCCC-CC---------CCEEEEeeCCCcCCCCEEEEECCcccchHHHH
Confidence 4888999999999999999997 4555444332110 00 00011222233358999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEEEeCchhhcccC
Q 028297 166 AAVRLLERMGAEVVECACVVGLPEGQRRLD 195 (211)
Q Consensus 166 ~a~~~L~~~Ga~~V~v~~~~~~~~~~~~l~ 195 (211)
++++.|++.|+++|.++++...+.+.+++.
T Consensus 142 ~ai~~L~~~G~~~I~~~~ll~~~~gl~~l~ 171 (209)
T PRK00129 142 AAIDLLKKRGAKNIKVLCLVAAPEGIKALE 171 (209)
T ss_pred HHHHHHHHcCCCEEEEEEEecCHHHHHHHH
Confidence 999999999999999999999988888875
No 71
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=99.30 E-value=5.7e-12 Score=112.05 Aligned_cols=117 Identities=22% Similarity=0.232 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEE-eecCCCCCCceeeeeeeeecCceeEEEe-cCCc
Q 028297 68 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP-LRKPNKLPGEVISEAYVLEYGTDRLEMH-VGAI 145 (211)
Q Consensus 68 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~-~~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 145 (211)
.....+++.||+.... +.|+|+|+|.+|.+.|-.+|+.+|+|+.. +-|.+....+....+...+...-++.+. ....
T Consensus 267 ~~R~~mG~~La~e~~~-eaDvVipVPDSg~~aAig~A~~sGiPy~~GliKNrYvgRTFI~P~q~~R~~~Vr~KLnpvr~~ 345 (470)
T COG0034 267 EARKRMGEKLAEEIPV-EADVVIPVPDSGRPAAIGYARASGIPYEEGLIKNRYVGRTFIMPTQELREKGVRLKLNPVREV 345 (470)
T ss_pred HHHHHHHHHHHHhCCc-cccEEEecCCCChHHHHHHHHHhCCchhhccccccccceeeeCCcHHHHHhhhhhhcCchHHH
Confidence 3445888888877643 56999999999999999999999999955 3233222111111111001000012211 1234
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 185 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~ 185 (211)
.+||+|+||||-|-.|+|++..+++|+++||++|++..-.
T Consensus 346 v~GKrVvlVDDSIVRGTTsr~IV~mlReAGAkEVHvrias 385 (470)
T COG0034 346 VKGKRVVLVDDSIVRGTTSRRIVQMLREAGAKEVHVRIAS 385 (470)
T ss_pred hCCCeEEEEccccccCccHHHHHHHHHHhCCCEEEEEecC
Confidence 6999999999999999999999999999999999987654
No 72
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=99.28 E-value=4.8e-11 Score=97.96 Aligned_cols=99 Identities=23% Similarity=0.276 Sum_probs=73.7
Q ss_pred cEEEEecCCccchHHHHHHHhC-CCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHHH
Q 028297 87 SVVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTLS 165 (211)
Q Consensus 87 d~Iv~i~~gG~~~A~~lA~~L~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~ 165 (211)
-+++++-++|+.++..+++.+. +++..+.+.+.. ... +........+...+|++||||||+++||+|+.
T Consensus 70 i~~V~ILrgg~~~~~~l~~~l~~~~v~~i~~~r~~-~t~---------~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~ 139 (207)
T TIGR01091 70 IVLVPILRAGLGMVDGVLKLIPEAKVGHVGAYRNE-ETL---------KPVPYYSKLPEDIDERTVIVLDPMLATGGTMI 139 (207)
T ss_pred EEEEEEeCCcHHHHHHHHHhCCcCceeEEEEEeCC-CCC---------CCEEEEecCCCCCCCCEEEEECCCccchHHHH
Confidence 4778888999999999999986 455444332211 000 00011212233358999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEEEEEeCchhhcccC
Q 028297 166 AAVRLLERMGAEVVECACVVGLPEGQRRLD 195 (211)
Q Consensus 166 ~a~~~L~~~Ga~~V~v~~~~~~~~~~~~l~ 195 (211)
++++.|++.|+++|.++++...+.+.+++.
T Consensus 140 ~ai~~L~~~G~~~I~v~~ll~~~~gl~~l~ 169 (207)
T TIGR01091 140 AALDLLKKRGAKKIKVLSIVAAPEGIEAVE 169 (207)
T ss_pred HHHHHHHHcCCCEEEEEEEecCHHHHHHHH
Confidence 999999999999999999999988777774
No 73
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=99.13 E-value=8.1e-10 Score=86.10 Aligned_cols=118 Identities=22% Similarity=0.258 Sum_probs=77.8
Q ss_pred cCHHHHHHHHHHHHHHHhhc----CCcEEEEecCCccchHHHHHHHhC------CCeEEeecCC---CCCCceeeeeeee
Q 028297 65 LDHKAFKDTVDIFVDRYRDM----GISVVAGIEARGFVFGPSIALAIG------AKFVPLRKPN---KLPGEVISEAYVL 131 (211)
Q Consensus 65 ~~~~~~~~~~~~la~~i~~~----~~d~Iv~i~~gG~~~A~~lA~~L~------~p~~~~~k~~---~~~~~~~~~~~~~ 131 (211)
.++...+.+...++.++.+. +--+++|+.+||.++|+.+++.++ +|+..+.-.- ...... ....
T Consensus 7 ld~~~i~RtitRia~eIiErnk~~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~lDIt~yRDDl~~~~---~~~p 83 (179)
T COG2065 7 LDEAAIRRTITRIAHEIIERNKGLDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGELDITLYRDDLTQKG---PLRP 83 (179)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeeeEEeEEeechhhhcC---ccCC
Confidence 35555555555666665443 334889999999999999999762 4554332110 000000 0000
Q ss_pred ecCceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCC-CeEEEEEEEEeCch
Q 028297 132 EYGTDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMG-AEVVECACVVGLPE 189 (211)
Q Consensus 132 ~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~G-a~~V~v~~~~~~~~ 189 (211)
.. +.. . ......||+|+||||++-||.|+++|.+.|...| +..|..+|+++++.
T Consensus 84 ~~-~~t-~--~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRPa~I~LavLVDRGH 138 (179)
T COG2065 84 QA-KTT-I--LPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAKIQLAVLVDRGH 138 (179)
T ss_pred cc-cCc-c--CcccccCCEEEEEeeecccCccHHHHHHHHHhcCCcceEEEEEEEcCCC
Confidence 00 000 0 1122589999999999999999999999999999 68999999999974
No 74
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=99.13 E-value=1.8e-09 Score=87.41 Aligned_cols=127 Identities=23% Similarity=0.265 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEE--eecCCCCCCce-----eee-e-----eeeecC
Q 028297 68 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP--LRKPNKLPGEV-----ISE-A-----YVLEYG 134 (211)
Q Consensus 68 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~--~~k~~~~~~~~-----~~~-~-----~~~~~~ 134 (211)
+..+.+++.++..-. .+..+|.++|+||++.|..+|+.||.|+.. +||-.-..+.- ..+ . +...+.
T Consensus 9 dAGr~La~~l~~~~~-~~~~iVlaLpRGGvpva~evA~~lga~ldvliVrKiG~P~n~E~aiGAvae~g~~v~n~~~~~~ 87 (220)
T COG1926 9 DAGRKLAQELAALRD-LKDVIVLALPRGGVPVAFEVAQALGAPLDVLIVRKIGAPGNPELAIGAVAEGGDVVLNYDVVRS 87 (220)
T ss_pred HHHHHHHHHHHhhcc-CCCcEEEEecCCCchHHHHHHHHhCCCeeEEEEeecCCCCCchhceeeeccCCcEecchhhhhh
Confidence 334444444443221 133589999999999999999999999844 55543221110 000 0 000000
Q ss_pred --------------------ceeEEEecC---CcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCchhh
Q 028297 135 --------------------TDRLEMHVG---AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQ 191 (211)
Q Consensus 135 --------------------~~~~~~~~~---~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~~~ 191 (211)
+.......+ ..++||+|+||||-+.||+||.++++.++++|++.+.+++-+...++.
T Consensus 88 ~~i~~~~i~~~~~~e~~El~rrr~~yr~~~~~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~~~IviAVPV~p~~a~ 167 (220)
T COG1926 88 LGIDDAYIEAAAARERKELLRRREAYRGGRPVPSLKGRTVILVDDGIATGATMKAAVRALRAKGPKEIVIAVPVAPEDAA 167 (220)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCCceEEEEcccCCHHHH
Confidence 000000111 125999999999999999999999999999999999999998877755
Q ss_pred cccC
Q 028297 192 RRLD 195 (211)
Q Consensus 192 ~~l~ 195 (211)
..|+
T Consensus 168 ~~l~ 171 (220)
T COG1926 168 AELE 171 (220)
T ss_pred HHHH
Confidence 5554
No 75
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=99.05 E-value=1e-11 Score=92.97 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=43.1
Q ss_pred cccccceeeEEEeeecccCcccceeeeeeeeee---------------eeeecceeeeeecCCCCCCeeheeHHHHhc
Q 028297 3 SEETRGYRAFLKQSVWCLTSQYQVSFSFFFLFF---------------CFVFSSWSFFFFQIWWAAGIMFQDITTLLL 65 (211)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~ 65 (211)
.|++||+|||||||++.| +|+++||++. ++||.+|++|+.. .++++++.+.+++++.
T Consensus 42 ~~~v~g~dv~iiqs~~~~-----~nd~lmeLll~i~a~r~~~a~~i~~ViPYl~YaRQDr~-~~ge~isak~~a~lL~ 113 (116)
T PF13793_consen 42 PESVRGKDVFIIQSTSPP-----VNDNLMELLLLIDALRRAGAKRITLVIPYLPYARQDRR-KPGEPISAKVVAKLLS 113 (116)
T ss_dssp SS--TTSEEEEE---SSS-----HHHHHHHHHHHHHHHHHTTBSEEEEEESS-TTTTSSSS-STTC--HHHHHHHHHH
T ss_pred cccccCCceEEEEecCCc-----hhHHHHHHHHHHHHHHHcCCcEEEEeccchhhhhhccC-CCCCcchHHHHHHHHH
Confidence 479999999999999865 8999999844 7999999999999 9999999888888775
No 76
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Probab=98.96 E-value=1e-09 Score=95.65 Aligned_cols=112 Identities=18% Similarity=0.208 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEEee-cCCCCCCceeeeeeeee-cC-ceeEEEecCCcCC
Q 028297 71 KDTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVPLR-KPNKLPGEVISEAYVLE-YG-TDRLEMHVGAIEP 147 (211)
Q Consensus 71 ~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~-k~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 147 (211)
..+++.||. ....+.|+|+++|.+|..-|...|...|+|+.... |.+.........+.+.+ .+ +..+-... ...+
T Consensus 278 ~~~G~~LA~-e~P~d~DvVi~VPdS~~~aAlgyA~~sG~py~e~l~rnrYvGRTFI~P~q~iR~~~V~~Kl~~l~-~~~~ 355 (474)
T KOG0572|consen 278 LQCGEQLAT-EAPVDADVVIPVPDSGTTAALGYAAKSGLPYQEVLIRNRYVGRTFIEPNQRIRQLGVKKKLGPLR-QNFE 355 (474)
T ss_pred HHHHhHhhh-cCCcccceEEecCCchhHHHHHHHHHhCCchhhhhhhcccccceecCccHHHHHhhhhhhcccch-hhcC
Confidence 366666665 22347899999999999999999999999996632 22221111111111111 11 11232222 2359
Q ss_pred CCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEE
Q 028297 148 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 184 (211)
Q Consensus 148 gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~ 184 (211)
||+|+||||-|--|+|+...+++|+++||+.|+...-
T Consensus 356 GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riA 392 (474)
T KOG0572|consen 356 GKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIA 392 (474)
T ss_pred CceEEEEecceeccCchHHHHHHHHHcCCcEEEEEec
Confidence 9999999999999999999999999999999987654
No 77
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.81 E-value=3.5e-08 Score=77.54 Aligned_cols=121 Identities=17% Similarity=0.303 Sum_probs=78.9
Q ss_pred eHHHHhcCHHHHHHHHHHHHHHHhhc---CCcEEEEecCCccchHHHHHHHhC-------CCeEE--eecCCCCCCceee
Q 028297 59 DITTLLLDHKAFKDTVDIFVDRYRDM---GISVVAGIEARGFVFGPSIALAIG-------AKFVP--LRKPNKLPGEVIS 126 (211)
Q Consensus 59 d~~~l~~~~~~~~~~~~~la~~i~~~---~~d~Iv~i~~gG~~~A~~lA~~L~-------~p~~~--~~k~~~~~~~~~~ 126 (211)
|+....--.++.+.-.+.+|.-+.+. .+-+++|+..||+.+-+.+-++|. .|+.. +|-+.
T Consensus 31 Dls~v~ip~gli~dr~~rlakDi~~~~g~~~i~~lcVlkG~ykF~adLve~l~n~~s~~~~pmtvDFIR~kS-------- 102 (216)
T KOG3367|consen 31 DLSGVVIPHGLIRDRVERLAKDIMKEIGNKPIIFLCVLKGGYKFFADLVERLKNRNSDRPLPMTVDFIRAKS-------- 102 (216)
T ss_pred cccccccccchhhhHHHHhhhhhhhccCCCceEEEEEecchhHHHHHHHHHHhhcccCCCcceeeeeeehhh--------
Confidence 33333333455555555666555433 345888999999998777777752 33322 33211
Q ss_pred eeeeeecCceeEEEecCC---cCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch
Q 028297 127 EAYVLEYGTDRLEMHVGA---IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 189 (211)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~---~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~ 189 (211)
|......+.+.+..++ .+.||+|||||||++||.||....+.+++.+++.+.++.+..+..
T Consensus 103 --Y~n~~stg~iqiig~d~l~~ltgK~VliVeDIvdTGrTl~~Lls~~~~~k~~~v~vasLL~Krt 166 (216)
T KOG3367|consen 103 --YCNDQSTGDIQIIGGDDLSTLTGKNVLIVEDIVDTGRTLSTLLSHMKAYKPSMVKVASLLVKRT 166 (216)
T ss_pred --hcCCcccCCceeecCCCHHHhcCCcEEEEEeeccccchHHHHHHHHHhcCccceeeeeeccccc
Confidence 1111112233322121 259999999999999999999999999999999999999988764
No 78
>PLN02541 uracil phosphoribosyltransferase
Probab=98.53 E-value=9.3e-07 Score=74.23 Aligned_cols=49 Identities=39% Similarity=0.674 Sum_probs=44.4
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCe--EEEEEEEEeCchhhcccC
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAE--VVECACVVGLPEGQRRLD 195 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~--~V~v~~~~~~~~~~~~l~ 195 (211)
++++|||+||++.||+|+.++++.|+++|++ .+.+++++..++|.+++.
T Consensus 156 ~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias~~Gl~~i~ 206 (244)
T PLN02541 156 EGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAAPPALKKLS 206 (244)
T ss_pred CCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEECHHHHHHHH
Confidence 4789999999999999999999999999997 888999998888777764
No 79
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.46 E-value=1.3e-06 Score=71.23 Aligned_cols=110 Identities=22% Similarity=0.298 Sum_probs=76.3
Q ss_pred EEEEecCCccchHHHHHHHhC-CCeEEee-cCCCCCCceeeeeeeeecCceeEEE-ecCCcCCCCEEEEEeccccchHHH
Q 028297 88 VVAGIEARGFVFGPSIALAIG-AKFVPLR-KPNKLPGEVISEAYVLEYGTDRLEM-HVGAIEPGERALVIDDLVATGGTL 164 (211)
Q Consensus 88 ~Iv~i~~gG~~~A~~lA~~L~-~p~~~~~-k~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gk~VLIVDDiitTG~Tl 164 (211)
++|++-+.|..+...+.+.+- .+...+- .|...+.+ ...+. ..+...+++.|+|+|-++.||+|+
T Consensus 73 ~~V~ILRAGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~------------p~~yy~KLP~~~~~~~viv~DPMLATG~s~ 140 (210)
T COG0035 73 VIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETLE------------PVLYYEKLPEDIDERTVIVLDPMLATGGSA 140 (210)
T ss_pred EEEEEeeccccHHHHHHHhCCcceEEEEEEEecCccCc------------eehhHHhCCCcccCCeEEEECchhhccHhH
Confidence 567888999999888888763 2322221 11111110 01111 123345899999999999999999
Q ss_pred HHHHHHHHhC-CCeEEEEEEEEeCchhhcccC----CCCeEEEEccccccc
Q 028297 165 SAAVRLLERM-GAEVVECACVVGLPEGQRRLD----GKPLYILVEPRLSVN 210 (211)
Q Consensus 165 ~~a~~~L~~~-Ga~~V~v~~~~~~~~~~~~l~----~~~l~sl~~~~~~~~ 210 (211)
..|++.|++. |++.+.+.+++..++|.+++. +++++. ..+++.||
T Consensus 141 i~ai~~L~~~G~~~~I~~v~~vAapeGi~~v~~~~p~v~I~t-a~iD~~Ln 190 (210)
T COG0035 141 IAAIDLLKKRGGPKNIKVVSLVAAPEGIKAVEKAHPDVEIYT-AAIDEGLN 190 (210)
T ss_pred HHHHHHHHHhCCCceEEEEEEEecHHHHHHHHHhCCCCeEEE-EEeccccc
Confidence 9999999999 899999999999999777764 677776 33444443
No 80
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=98.36 E-value=3.9e-06 Score=68.92 Aligned_cols=98 Identities=20% Similarity=0.235 Sum_probs=68.8
Q ss_pred cEEEEecCCccchHHHHHHHhC-CCeEEeecCCCCCCceeeeeeeeecCceeEE-EecCCcCCCCEEEEEeccccchHHH
Q 028297 87 SVVAGIEARGFVFGPSIALAIG-AKFVPLRKPNKLPGEVISEAYVLEYGTDRLE-MHVGAIEPGERALVIDDLVATGGTL 164 (211)
Q Consensus 87 d~Iv~i~~gG~~~A~~lA~~L~-~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gk~VLIVDDiitTG~Tl 164 (211)
-++|++-++|..+...+.+.+- .++..+.-++.... .+..+. ...+...++++|+|+|-++.||+|+
T Consensus 69 i~~V~IlRaG~~m~~~~~~~~p~a~~g~i~i~r~~~t-----------~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~ 137 (207)
T PF14681_consen 69 ICIVPILRAGLPMLEGFREVFPDARVGHIGIQRDEET-----------LEPVLYYNKLPEDIENRKVILLDPMLATGGSA 137 (207)
T ss_dssp EEEEEETTTHHHHHHHHHHHSTTSEEEEEEEEEETTT-----------SSEEEEEEE--TTGTTSEEEEEESEESSSHHH
T ss_pred EEEEEEeCCcHHHHHHHHHhCCCcceEEEEEEEcCCc-----------cceeeeHhhCCCCccCCEEEEEeccccchhhH
Confidence 4778888999999998888873 45444321111000 001111 1223334899999999999999999
Q ss_pred HHHHHHHHhCCC--eEEEEEEEEeCchhhcccC
Q 028297 165 SAAVRLLERMGA--EVVECACVVGLPEGQRRLD 195 (211)
Q Consensus 165 ~~a~~~L~~~Ga--~~V~v~~~~~~~~~~~~l~ 195 (211)
.++++.|+++|+ +.+.+++++..++|.+++.
T Consensus 138 ~~ai~~L~~~G~~~~~I~~v~~ias~~Gl~~l~ 170 (207)
T PF14681_consen 138 IAAIEILKEHGVPEENIIIVSVIASPEGLERLL 170 (207)
T ss_dssp HHHHHHHHHTTG-GGEEEEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHcCCCcceEEEEEEEecHHHHHHHH
Confidence 999999999987 7899999998888777764
No 81
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=98.17 E-value=4.7e-05 Score=61.31 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHHHHhhc--CCcEEEEecCCccchHHHHHHHhCCCeEEeec-CCCCCCceeeeeeeeecC--ce-eEE
Q 028297 66 DHKAFKDTVDIFVDRYRDM--GISVVAGIEARGFVFGPSIALAIGAKFVPLRK-PNKLPGEVISEAYVLEYG--TD-RLE 139 (211)
Q Consensus 66 ~~~~~~~~~~~la~~i~~~--~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k-~~~~~~~~~~~~~~~~~~--~~-~~~ 139 (211)
+|...+.+...|+.++.+. +.-+++|-..-.--++..+++.++-...++.. |+..++....-.+..++. .. .++
T Consensus 32 ~P~~~~~~~~~La~~~~~~~~~~~lvIGfAETATgLG~~V~~~~~~~~~ylhTTR~~v~~~~~~~~F~E~HSHAt~h~ly 111 (191)
T PF15609_consen 32 RPSVMRDAGRLLAAQVPEALPGPVLVIGFAETATGLGHGVFDALGAACLYLHTTREPVPGVPPLLEFEEEHSHATDHLLY 111 (191)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCeEEEEEhHHHHHHHHHHHHHhhhccceeeeccccCCCCccceeeeccccccccceec
Confidence 6888889999999988765 56789999988888999999998743334332 333344111111222221 11 222
Q ss_pred Eec-CCcCCCCEEEEEeccccchHHHHHHHHHHHhCCC-eEEEEEEEEeCch
Q 028297 140 MHV-GAIEPGERALVIDDLVATGGTLSAAVRLLERMGA-EVVECACVVGLPE 189 (211)
Q Consensus 140 ~~~-~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga-~~V~v~~~~~~~~ 189 (211)
... ......+.+++|||=+|||+|....++.|++.-. +.+.++++.+-.+
T Consensus 112 ~~~~~~l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p~~~yvvasL~d~~~ 163 (191)
T PF15609_consen 112 PPDPDLLRNARTLVLVDDEISTGNTFLNLIRALHAKYPRKRYVVASLLDWRS 163 (191)
T ss_pred CCChHHhcCCCCEEEEecCccchHHHHHHHHHHHHhCCCceEEEEEEeeCCC
Confidence 211 1234577999999999999999999999988654 5677778887654
No 82
>PF15610 PRTase_3: PRTase ComF-like
Probab=96.75 E-value=0.011 Score=50.13 Aligned_cols=72 Identities=15% Similarity=0.165 Sum_probs=47.0
Q ss_pred eEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEE-EEEeC-ch---hhc-ccCCCCeEEEEcccccc
Q 028297 137 RLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA-CVVGL-PE---GQR-RLDGKPLYILVEPRLSV 209 (211)
Q Consensus 137 ~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~-~~~~~-~~---~~~-~l~~~~l~sl~~~~~~~ 209 (211)
.+.+.... .+||.+|.+|||-.||++-..+.+.+++.|++...+. ..++. .. ..| +|+-+.+.++.++.+++
T Consensus 128 ~y~ID~~~-l~gk~lIflDDIkITGshE~~V~~~~~~~~~~~~~~yly~aeln~~i~p~IEn~lN~~~v~s~~Dl~~ii 205 (274)
T PF15610_consen 128 TYHIDKEF-LSGKHLIFLDDIKITGSHEDKVRKILKEYGLENDFIYLYYAELNKDIDPNIENRLNYVAVPSIKDLAEII 205 (274)
T ss_pred ceEecHHH-hCCcEEEEeccEEecCcHHHHHHHHHHHcCccccEEEEEEecccccCCcchhhhhhhhccCcHHHHHHHh
Confidence 34443333 5999999999999999999999999999998763333 33332 11 222 23344555555555443
No 83
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=95.68 E-value=0.062 Score=43.76 Aligned_cols=59 Identities=20% Similarity=0.349 Sum_probs=45.6
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCe--EEEEEEEEeCchhhcc-cCCCCeEEEEc
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAE--VVECACVVGLPEGQRR-LDGKPLYILVE 204 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~--~V~v~~~~~~~~~~~~-l~~~~l~sl~~ 204 (211)
.-.++|||.=-++.||.|+.+|++.|+++|.. .+....+.-.+.|.+. .+..|...+++
T Consensus 187 I~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~IiL~sLF~tP~gak~i~~~fP~itilt 248 (267)
T KOG1017|consen 187 ITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNIILVSLFITPTGAKNITRKFPYITILT 248 (267)
T ss_pred ccceeEEEEeeeecCCccHHHHHHHHHHcCCCcccEEEEEeeecchhhHHHHHhCCeEEEEe
Confidence 47789999999999999999999999999963 4565666655554444 45777666665
No 84
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=93.65 E-value=1.4 Score=32.74 Aligned_cols=75 Identities=17% Similarity=0.206 Sum_probs=44.9
Q ss_pred CccchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccc--hH--HHHHHHHH
Q 028297 95 RGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT--GG--TLSAAVRL 170 (211)
Q Consensus 95 gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitT--G~--Tl~~a~~~ 170 (211)
+.-.+|..+|+.||.++..+..++-..++. .+.+ ....+|++|+||-++... -. -+.-++++
T Consensus 8 ~~~~La~~ia~~L~~~~~~~~~~~F~dGE~------------~v~i--~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a 73 (116)
T PF13793_consen 8 SSQDLAERIAEALGIPLGKVETKRFPDGET------------YVRI--PESVRGKDVFIIQSTSPPVNDNLMELLLLIDA 73 (116)
T ss_dssp SGHHHHHHHHHHTTS-EE-EEEEE-TTS-E------------EEEE--SS--TTSEEEEE---SSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCceeeeEEEEcCCCCE------------EEEe--cccccCCceEEEEecCCchhHHHHHHHHHHHH
Confidence 344699999999999887654333222221 2333 334589999999998875 22 34557788
Q ss_pred HHhCCCeEEEEEE
Q 028297 171 LERMGAEVVECAC 183 (211)
Q Consensus 171 L~~~Ga~~V~v~~ 183 (211)
++++||+.|.++.
T Consensus 74 ~r~~~a~~i~~Vi 86 (116)
T PF13793_consen 74 LRRAGAKRITLVI 86 (116)
T ss_dssp HHHTTBSEEEEEE
T ss_pred HHHcCCcEEEEec
Confidence 8999998876553
No 85
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=91.00 E-value=2.8 Score=36.88 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=53.4
Q ss_pred EEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccc-hHH---
Q 028297 88 VVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GGT--- 163 (211)
Q Consensus 88 ~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitT-G~T--- 163 (211)
.|++ -.+.-.+|..+|+.||+++..+..++-..++. .+. .....+|++|+||-..... ...
T Consensus 23 ~i~~-g~~~~~la~~ia~~lg~~l~~~~~~~FpDGE~------------~v~--i~~~vrg~~V~ivqs~~~p~nd~l~e 87 (330)
T PRK02812 23 RLFS-GSSNPALAQEVARYLGMDLGPMIRKRFADGEL------------YVQ--IQESIRGCDVYLIQPTCAPVNDHLME 87 (330)
T ss_pred EEEE-CCCCHHHHHHHHHHhCCCceeeEEEECCCCCE------------EEE--eCCCCCCCEEEEECCCCCCccHHHHH
Confidence 4444 44556799999999999986654333223332 222 2333489999999986533 222
Q ss_pred HHHHHHHHHhCCCeEEEEEEE
Q 028297 164 LSAAVRLLERMGAEVVECACV 184 (211)
Q Consensus 164 l~~a~~~L~~~Ga~~V~v~~~ 184 (211)
+.-+++.++++||++|.++.-
T Consensus 88 Lll~~~alr~~ga~ri~~ViP 108 (330)
T PRK02812 88 LLIMVDACRRASARQITAVIP 108 (330)
T ss_pred HHHHHHHHHHhCCceEEEEEe
Confidence 456778889999998776554
No 86
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=90.29 E-value=3.7 Score=37.60 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=52.6
Q ss_pred EEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccc-hH---H
Q 028297 88 VVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GG---T 163 (211)
Q Consensus 88 ~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitT-G~---T 163 (211)
.++-.-.+.-.+|..+|..||+++..+..++-..++. .+.+ ...++|+.|+||-..... -. =
T Consensus 120 m~I~sgs~~~~LA~~IA~~Lg~~l~~~~~~rFpDGE~------------~Vri--~e~VrG~dV~IVqS~~~pvNd~LmE 185 (439)
T PTZ00145 120 AILFSGSSNPLLSKNIADHLGTILGRVHLKRFADGEV------------SMQF--LESIRGKDVYIIQPTCPPVNENLIE 185 (439)
T ss_pred eEEEECCCCHHHHHHHHHHhCCCceeeEEEECCCCCE------------EEEE--CCCcCCCeEEEEecCCCCCcHHHHH
Confidence 3333334456799999999999987655444333332 2222 233489999999875433 11 2
Q ss_pred HHHHHHHHHhCCCeEEEEEEE
Q 028297 164 LSAAVRLLERMGAEVVECACV 184 (211)
Q Consensus 164 l~~a~~~L~~~Ga~~V~v~~~ 184 (211)
+.-+++.++++||+.|.++.-
T Consensus 186 LLllidAlr~agAkrItlViP 206 (439)
T PTZ00145 186 LLLMISTCRRASAKKITAVIP 206 (439)
T ss_pred HHHHHHHHHHhccCeEEEEee
Confidence 345677888999988766654
No 87
>KOG1377 consensus Uridine 5'- monophosphate synthase/orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=89.97 E-value=1.3 Score=37.38 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=75.4
Q ss_pred eeeecceeeeeecCCCCCCeeheeHHHHhcCHHHHHHHHHHHHHHHhhc--CCcE--EEEecCCc-cchHHHHHHHhCCC
Q 028297 36 CFVFSSWSFFFFQIWWAAGIMFQDITTLLLDHKAFKDTVDIFVDRYRDM--GISV--VAGIEARG-FVFGPSIALAIGAK 110 (211)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~~--~~d~--Iv~i~~gG-~~~A~~lA~~L~~p 110 (211)
+..+..+...+-...| .+.|.... ..+..+..++..++..|-+. .+|+ +++++..| ...+..+|+..+++
T Consensus 48 ~~~~Gpf~l~sk~h~d----i~~df~~~-~~~k~L~aLA~a~~f~I~edrkffDigntvg~qY~gg~~kia~wadl~n~h 122 (261)
T KOG1377|consen 48 ALRFGPFILKSKTHSD----IFFDFSLF-NSGKDLRALAQAYAFLIFEDRKFFDIGNTVGLQYKGGPLKIASWADLVNAH 122 (261)
T ss_pred HHhhCCeEeeccccCc----eeeccccc-ccHHHHHHHHHHHHHHHHhhhhcccccceeccccccchHHHHHHHHHHhcc
Confidence 3556666665444433 35566544 25677788888888877554 5799 99999766 66677888888776
Q ss_pred eEEee------cCCCCCCceeeeeeeeecC-ceeEEEecCCcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEE
Q 028297 111 FVPLR------KPNKLPGEVISEAYVLEYG-TDRLEMHVGAIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 183 (211)
Q Consensus 111 ~~~~~------k~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~ 183 (211)
...-+ +++... ..+ .+-+- ....++|.+|+.||+.++|.-+.+. .+.-....+.+..+
T Consensus 123 ~v~g~~i~~g~~rk~~k----------~~~egG~ll---lAems~kg~L~~~dy~ea~~aI~ee--~~d~~~G~v~g~~~ 187 (261)
T KOG1377|consen 123 GVPGRGIIKGLNRKLLK----------DHGEGGVLL---LAELSSKGSLITGDYTEAATAIAEE--DIDFVNGFVAGSIV 187 (261)
T ss_pred CcccchHHHHHhhhccc----------cCCCCceEE---EEEeccCCceeehhHHHHHHHHHHh--hhchheeEEeeeee
Confidence 54422 111000 000 11121 1224889999999955555555544 22222334445444
Q ss_pred EEeCc
Q 028297 184 VVGLP 188 (211)
Q Consensus 184 ~~~~~ 188 (211)
..++.
T Consensus 188 ~ldrq 192 (261)
T KOG1377|consen 188 ALDRQ 192 (261)
T ss_pred eccHH
Confidence 44443
No 88
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=88.89 E-value=5.7 Score=34.45 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=50.0
Q ss_pred CccchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchH---HHHHHHHHH
Q 028297 95 RGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG---TLSAAVRLL 171 (211)
Q Consensus 95 gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~---Tl~~a~~~L 171 (211)
+.-.+|..+|+.||+|+..+..++-..++. .+.+ ....+|++|+||-....--. -+.-+++.|
T Consensus 10 ~~~~la~~ia~~lg~~~~~~~~~~F~dGE~------------~v~i--~~~v~g~~V~ivqs~~~~n~~l~elll~~~al 75 (301)
T PRK07199 10 GNEAAAGRLAAALGVEVGRIELHRFPDGES------------YVRL--DSPVAGRTVVLVCSLDRPDEKLLPLLFAAEAA 75 (301)
T ss_pred CCHHHHHHHHHHhCCceeeeEEEECCCCCE------------EEEE--CCCCCCCEEEEECCCCCCcHHHHHHHHHHHHH
Confidence 345699999999999987654433323332 2332 23348999999998654222 244567788
Q ss_pred HhCCCeEEEEEEE
Q 028297 172 ERMGAEVVECACV 184 (211)
Q Consensus 172 ~~~Ga~~V~v~~~ 184 (211)
+++||+.+.++.-
T Consensus 76 r~~~a~~i~~ViP 88 (301)
T PRK07199 76 RELGARRVGLVAP 88 (301)
T ss_pred HHcCCCeEEEEee
Confidence 9999998766543
No 89
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=88.88 E-value=3.7 Score=35.70 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=47.3
Q ss_pred hHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccc-hHH---HHHHHHHHHhC
Q 028297 99 FGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GGT---LSAAVRLLERM 174 (211)
Q Consensus 99 ~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitT-G~T---l~~a~~~L~~~ 174 (211)
+|..+|+.||+++..+..++-..++. .+. .....+|++|+||-..... ... +.-.++.++++
T Consensus 1 la~~ia~~l~~~l~~~~~~~F~DGE~------------~vr--i~~~v~g~~v~ii~s~~~p~nd~l~ell~~~~a~r~~ 66 (304)
T PRK03092 1 LAEEVAKELGVEVTPTTAYDFANGEI------------YVR--FEESVRGCDAFVLQSHTAPINKWLMEQLIMIDALKRA 66 (304)
T ss_pred CHHHHHHHhCCceeeeEEEECCCCCE------------EEE--ECCCCCCCEEEEEeCCCCCCcHHHHHHHHHHHHHHHc
Confidence 57899999999987654443333332 122 2233589999998875542 222 45678888999
Q ss_pred CCeEEEEEEE
Q 028297 175 GAEVVECACV 184 (211)
Q Consensus 175 Ga~~V~v~~~ 184 (211)
||+++.++.-
T Consensus 67 ~a~~i~~ViP 76 (304)
T PRK03092 67 SAKRITVVLP 76 (304)
T ss_pred CCCeEEEEEe
Confidence 9998776554
No 90
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=88.86 E-value=3.6 Score=35.74 Aligned_cols=73 Identities=12% Similarity=0.164 Sum_probs=47.3
Q ss_pred chHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccc--hHH--HHHHHHHHHh
Q 028297 98 VFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT--GGT--LSAAVRLLER 173 (211)
Q Consensus 98 ~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitT--G~T--l~~a~~~L~~ 173 (211)
.+|..+|+.||+++..+..++-..++. .+.+ ....+|++|+||-..... -.. +.-.++.+++
T Consensus 2 ~lA~~ia~~lg~~l~~~~~~~FpdGE~------------~v~i--~~~v~g~~V~iv~s~~~p~nd~l~eLl~~~~a~r~ 67 (302)
T PLN02369 2 ALSQEIACYLGLELGKITIKRFADGEI------------YVQL--QESVRGCDVFLVQPTCPPANENLMELLIMIDACRR 67 (302)
T ss_pred hHHHHHHHHhCCceeeeEEEECCCCCE------------EEEE--CCCCCCCeEEEEecCCCCcchHHHHHHHHHHHHHH
Confidence 478999999999987655443333332 2222 233489999999886522 222 4557788899
Q ss_pred CCCeEEEEEEE
Q 028297 174 MGAEVVECACV 184 (211)
Q Consensus 174 ~Ga~~V~v~~~ 184 (211)
+||+.+.++.-
T Consensus 68 ~~a~~i~~ViP 78 (302)
T PLN02369 68 ASAKRITAVIP 78 (302)
T ss_pred cCCCeEEEEee
Confidence 99998755443
No 91
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=88.74 E-value=4.5 Score=34.72 Aligned_cols=76 Identities=13% Similarity=0.165 Sum_probs=49.5
Q ss_pred CccchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchH---HHHHHHHHH
Q 028297 95 RGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG---TLSAAVRLL 171 (211)
Q Consensus 95 gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~---Tl~~a~~~L 171 (211)
+.-.+|..+|+.||+++..+..++-..++. .+.+ ....+|++|+|+-....-.. -+.-+++.|
T Consensus 7 ~~~~la~~ia~~l~~~~~~~~~~~FpdGE~------------~v~i--~~~v~g~~v~i~~~~~~~~d~l~ell~~~~al 72 (285)
T PRK00934 7 ASQLLASEVARLLNTELALVETKRFPDGEL------------YVRI--LGEIDGEDVVIISTTYPQDENLVELLLLIDAL 72 (285)
T ss_pred CCHHHHHHHHHHHCCceEeeEEEECCCCCE------------EEEE--CCCcCCCEEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 334699999999999987765444333332 2332 23348999999886433222 244577888
Q ss_pred HhCCCeEEEEEEE
Q 028297 172 ERMGAEVVECACV 184 (211)
Q Consensus 172 ~~~Ga~~V~v~~~ 184 (211)
+++||+++.++.-
T Consensus 73 r~~ga~~i~~v~P 85 (285)
T PRK00934 73 RDEGAKSITLVIP 85 (285)
T ss_pred HHcCCCeEEEEec
Confidence 9999998765543
No 92
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=88.63 E-value=5.2 Score=34.82 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=48.6
Q ss_pred CccchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccc-hHH---HHHHHHH
Q 028297 95 RGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GGT---LSAAVRL 170 (211)
Q Consensus 95 gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitT-G~T---l~~a~~~ 170 (211)
+.-.+|..+|+.||.++..+..++-..++. .+.+ ....+|++|+||=+.... -.. +.-+++.
T Consensus 8 ~~~~la~~ia~~lg~~~~~~~~~~FpdGE~------------~vri--~~~v~g~~V~ii~s~~~~~nd~l~eLll~~~a 73 (309)
T PRK01259 8 ANPELAEKIAKYLGIPLGKASVGRFSDGEI------------SVEI--NENVRGKDVFIIQSTCAPTNDNLMELLIMIDA 73 (309)
T ss_pred CCHHHHHHHHHHhCCceeeeEEEECCCCCE------------EEEe--CCCCCCCEEEEECCCCCCCcHHHHHHHHHHHH
Confidence 345799999999999986654333223332 2222 233489999999765332 112 4567788
Q ss_pred HHhCCCeEEEEEEE
Q 028297 171 LERMGAEVVECACV 184 (211)
Q Consensus 171 L~~~Ga~~V~v~~~ 184 (211)
++++||+.+.++.-
T Consensus 74 lr~~ga~~i~lViP 87 (309)
T PRK01259 74 LKRASAGRITAVIP 87 (309)
T ss_pred HHHcCCceEEEEee
Confidence 89999998765544
No 93
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=88.58 E-value=5.6 Score=35.03 Aligned_cols=77 Identities=13% Similarity=0.118 Sum_probs=50.7
Q ss_pred CCccchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccc-hHH---HHHHHH
Q 028297 94 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GGT---LSAAVR 169 (211)
Q Consensus 94 ~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitT-G~T---l~~a~~ 169 (211)
.+.-.+|..+|+.||+++..+..++-..++. .+.+ ....+|+.|+||-++... -.. +.-.++
T Consensus 16 ~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~------------~v~i--~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~ 81 (332)
T PRK00553 16 SKAKKLVDSICRKLSMKPGEIVIQKFADGET------------YIRF--DESVRNKDVVIFQSTCSPVNDSLMELLIAID 81 (332)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCCCCE------------EEEE--CCCCCCCEEEEEcCCCCCCchHHHHHHHHHH
Confidence 3445799999999999987654443333332 2222 333489999999886542 112 455778
Q ss_pred HHHhCCCeEEEEEEE
Q 028297 170 LLERMGAEVVECACV 184 (211)
Q Consensus 170 ~L~~~Ga~~V~v~~~ 184 (211)
.|+++||+.+.++.-
T Consensus 82 alr~~~a~~i~~ViP 96 (332)
T PRK00553 82 ALKRGSAKSITAILP 96 (332)
T ss_pred HHHHcCCCeEEEEee
Confidence 889999998766554
No 94
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=88.53 E-value=6.6 Score=34.36 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=49.6
Q ss_pred CccchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccc----hHHHHHHHHH
Q 028297 95 RGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT----GGTLSAAVRL 170 (211)
Q Consensus 95 gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitT----G~Tl~~a~~~ 170 (211)
+.-.+|..+|+.||+++..+..++-..++. .+.+ ....+|++|+||-..... =--+.-+++.
T Consensus 13 ~~~~la~~ia~~lg~~l~~~~~~~FpdGE~------------~v~i--~~~vrg~dV~iv~s~~~~~nd~lmelll~~~a 78 (320)
T PRK02269 13 SNKELAEKVAQEIGIELGKSSVRQFSDGEI------------QVNI--EESIRGHHVFILQSTSSPVNDNLMEILIMVDA 78 (320)
T ss_pred CCHHHHHHHHHHhCCceeeeEEEECCCCCE------------EEEE--CCCCCCCEEEEEecCCCCccchHHHHHHHHHH
Confidence 345799999999999887654433333332 2222 333489999999875431 1225567788
Q ss_pred HHhCCCeEEEEEEE
Q 028297 171 LERMGAEVVECACV 184 (211)
Q Consensus 171 L~~~Ga~~V~v~~~ 184 (211)
|+++||+++.++.-
T Consensus 79 lr~~~a~~i~~V~P 92 (320)
T PRK02269 79 LKRASAESINVVMP 92 (320)
T ss_pred HHHhCCCeEEEEEe
Confidence 89999998865544
No 95
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=87.45 E-value=7.7 Score=33.97 Aligned_cols=82 Identities=20% Similarity=0.181 Sum_probs=50.7
Q ss_pred EEEEecCCccchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchH----H
Q 028297 88 VVAGIEARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG----T 163 (211)
Q Consensus 88 ~Iv~i~~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~----T 163 (211)
.|++- .+.-.+|..+|+.||+|+..+..++-..++. .+.+ ....+|++|+||-+...... =
T Consensus 8 ~i~~g-~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~------------~v~i--~~~v~g~~V~iiqs~~~p~nd~lme 72 (319)
T PRK04923 8 LVFSG-NANKPLAQSICKELGVRMGKALVTRFSDGEV------------QVEI--EESVRRQEVFVIQPTCAPSAENLME 72 (319)
T ss_pred EEEEC-CCCHHHHHHHHHHhCCceeeeEEEECCCCCE------------EEEE--CCCcCCCeEEEEecCCCCCchHHHH
Confidence 34443 3335799999999999987654433333332 2232 33348999999966433211 2
Q ss_pred HHHHHHHHHhCCCeEEEEEEE
Q 028297 164 LSAAVRLLERMGAEVVECACV 184 (211)
Q Consensus 164 l~~a~~~L~~~Ga~~V~v~~~ 184 (211)
+.-+++.|+++||+++.++.-
T Consensus 73 Ll~~~~alr~~~a~~i~~ViP 93 (319)
T PRK04923 73 LLVLIDALKRASAASVTAVIP 93 (319)
T ss_pred HHHHHHHHHHcCCcEEEEEee
Confidence 345677888999998775543
No 96
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=87.10 E-value=3.4 Score=36.09 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=50.1
Q ss_pred cchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchH----HHHHHHHHHH
Q 028297 97 FVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGG----TLSAAVRLLE 172 (211)
Q Consensus 97 ~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~----Tl~~a~~~L~ 172 (211)
-.+|+.+|+.|+.|+.....++-..++ +.+......+|+.|.|+........ -+.-.+++++
T Consensus 14 ~~La~~ia~~l~~~l~~~~~~rF~DGE--------------~~V~i~EsVrg~dVfI~qs~~~pvnd~lmELLi~idA~k 79 (314)
T COG0462 14 PELAEKIAKRLGIPLGKVEVKRFPDGE--------------IYVRIEESVRGKDVFIIQSTSPPVNDNLMELLIMIDALK 79 (314)
T ss_pred HHHHHHHHHHhCCCcccceeEEcCCCc--------------EEEEecccccCCeEEEEeCCCCCcCHHHHHHHHHHHHHH
Confidence 368999999999998765433322232 2222344459999998887766433 2344678889
Q ss_pred hCCCeEEEEEEE
Q 028297 173 RMGAEVVECACV 184 (211)
Q Consensus 173 ~~Ga~~V~v~~~ 184 (211)
.+||++|.++.-
T Consensus 80 ~asA~~It~ViP 91 (314)
T COG0462 80 RASAKRITAVIP 91 (314)
T ss_pred hcCCceEEEEee
Confidence 999998876654
No 97
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=86.09 E-value=9.2 Score=33.17 Aligned_cols=76 Identities=14% Similarity=0.199 Sum_probs=47.3
Q ss_pred CccchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEE-eccccc-hH---HHHHHHH
Q 028297 95 RGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVI-DDLVAT-GG---TLSAAVR 169 (211)
Q Consensus 95 gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIV-DDiitT-G~---Tl~~a~~ 169 (211)
+.-.+|..+|+.||.++..+..++-..++. .+.+ ....+|+.|+|| -..... -. =+.-+++
T Consensus 8 ~~~~la~~ia~~lg~~~~~~~~~~FpdGE~------------~v~i--~~~v~g~~v~iv~~s~~~~~~~~l~el~~~~~ 73 (308)
T TIGR01251 8 SNQELAQKVAKNLGLPLGDVEVKRFPDGEL------------YVRI--NESVRGKDVFIIQQSTSAPVNDNLMELLIMID 73 (308)
T ss_pred CCHHHHHHHHHHhCCeeeeeEEEECCCCCE------------EEEE--CCCCCCCeEEEEeCCCCCCccHHHHHHHHHHH
Confidence 334699999999999987754433223332 2232 233489999998 554321 11 3455678
Q ss_pred HHHhCCCeEEEEEEE
Q 028297 170 LLERMGAEVVECACV 184 (211)
Q Consensus 170 ~L~~~Ga~~V~v~~~ 184 (211)
.++++||+++.++.-
T Consensus 74 a~r~~ga~~i~~v~P 88 (308)
T TIGR01251 74 ALKRASAKSITAVIP 88 (308)
T ss_pred HHHHcCCCeEEEEEE
Confidence 888999988755544
No 98
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=83.58 E-value=17 Score=31.82 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=49.1
Q ss_pred CCccchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccc-hHH---HHHHHH
Q 028297 94 ARGFVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GGT---LSAAVR 169 (211)
Q Consensus 94 ~gG~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitT-G~T---l~~a~~ 169 (211)
.+.-.+|..+|+.||+++..+..++-..++. .+.+ ....+|+.|+||-..... -.. +.-.++
T Consensus 16 ~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~------------~v~i--~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~ 81 (323)
T PRK02458 16 NSNLEIAEKIAQAAGVPLGKLSSRQFSDGEI------------MINI--EESVRGDDIYIIQSTSFPVNDHLWELLIMID 81 (323)
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEECCCCCE------------EEEe--cCCcCCCeEEEEecCCCCCchHHHHHHHHHH
Confidence 3445799999999999986654333333332 2222 333489999999875322 222 344667
Q ss_pred HHHhCCCeEEEEEEE
Q 028297 170 LLERMGAEVVECACV 184 (211)
Q Consensus 170 ~L~~~Ga~~V~v~~~ 184 (211)
.|+++||+.+.++.-
T Consensus 82 alr~~~a~~i~lViP 96 (323)
T PRK02458 82 ACKRASANTVNVVLP 96 (323)
T ss_pred HHHHcCCceEEEEEe
Confidence 888999988766554
No 99
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=79.06 E-value=32 Score=30.26 Aligned_cols=83 Identities=7% Similarity=-0.028 Sum_probs=51.4
Q ss_pred EEEEecCCccchHHHHHHHh-CCCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccchHHH--
Q 028297 88 VVAGIEARGFVFGPSIALAI-GAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVATGGTL-- 164 (211)
Q Consensus 88 ~Iv~i~~gG~~~A~~lA~~L-~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitTG~Tl-- 164 (211)
.|++- .+.-.+|..+|+.+ |+|+..+..++-..++. .+.+......+|++|+||-..... .-+
T Consensus 18 ~i~~g-~~~~~LA~~ia~~l~g~~l~~~~~~~FpDGE~------------~v~v~~~~~vrg~~V~ivqs~~~p-d~lmE 83 (326)
T PLN02297 18 HLFYC-EETEELARKIAAESDAIELGSINWRKFPDGFP------------NLFINNAHGIRGQHVAFLASFSSP-AVIFE 83 (326)
T ss_pred EEEEC-CCCHHHHHHHHHHhCCCceeeeEEEECCCCCE------------EEEEcCCCCcCCCeEEEECCCCCC-hHHHH
Confidence 44443 34457999999996 89987765444333321 223322333589999998765433 222
Q ss_pred -HHHHHHHHhCCCeEEEEEEE
Q 028297 165 -SAAVRLLERMGAEVVECACV 184 (211)
Q Consensus 165 -~~a~~~L~~~Ga~~V~v~~~ 184 (211)
.-+++.|+++||+++.++.-
T Consensus 84 LLl~~dAlr~~ga~~i~~ViP 104 (326)
T PLN02297 84 QLSVIYALPKLFVASFTLVLP 104 (326)
T ss_pred HHHHHHHHHHcCCCEEEEEee
Confidence 34567778999998776655
No 100
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=77.13 E-value=35 Score=30.75 Aligned_cols=40 Identities=8% Similarity=0.125 Sum_probs=27.9
Q ss_pred CcCCCCEEEEEecccc---------------chHHHHH---HHHHHHhCCCeEEEEEEE
Q 028297 144 AIEPGERALVIDDLVA---------------TGGTLSA---AVRLLERMGAEVVECACV 184 (211)
Q Consensus 144 ~~~~gk~VLIVDDiit---------------TG~Tl~~---a~~~L~~~Ga~~V~v~~~ 184 (211)
...+|++|+||-+... .-..+.+ ++++|+ +||+++.++.-
T Consensus 73 ~~Vrg~dV~ivqs~~~~~v~~~~~~~~~~~p~nd~lmeLll~idalr-agA~rIt~ViP 130 (382)
T PRK06827 73 ESVRGKDIYILQDVGNYSVTYNMFGEKNHMSPDDHFQDLKRTIDAIR-GKARRITVIMP 130 (382)
T ss_pred CCCCCCeEEEEecCCcccccccccccccCCCCcHHHHHHHHHHHHHh-cCCCeEEEEee
Confidence 3359999999999652 1222333 788899 99998776544
No 101
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=68.09 E-value=12 Score=28.06 Aligned_cols=33 Identities=33% Similarity=0.520 Sum_probs=28.7
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 182 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~ 182 (211)
.+|++++|+ .+|++.+.++..|.+.|++.+.++
T Consensus 10 l~~~~vlvi----GaGg~ar~v~~~L~~~g~~~i~i~ 42 (135)
T PF01488_consen 10 LKGKRVLVI----GAGGAARAVAAALAALGAKEITIV 42 (135)
T ss_dssp GTTSEEEEE----SSSHHHHHHHHHHHHTTSSEEEEE
T ss_pred cCCCEEEEE----CCHHHHHHHHHHHHHcCCCEEEEE
Confidence 489999975 799999999999999999987543
No 102
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=65.66 E-value=15 Score=24.30 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=27.5
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVEC 181 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v 181 (211)
.+++.|+++++- |.....++..|++.|...+.+
T Consensus 48 ~~~~~vv~~c~~---~~~a~~~~~~l~~~G~~~v~~ 80 (89)
T cd00158 48 DKDKPIVVYCRS---GNRSARAAKLLRKAGGTNVYN 80 (89)
T ss_pred CCCCeEEEEeCC---CchHHHHHHHHHHhCcccEEE
Confidence 478899999886 778889999999999777653
No 103
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=62.06 E-value=17 Score=24.37 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=27.4
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEE
Q 028297 145 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 180 (211)
Q Consensus 145 ~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~ 180 (211)
..++++|++++ .+|.....++..|++.|-+.++
T Consensus 53 ~~~~~~iv~~c---~~g~~a~~~~~~l~~~G~~~v~ 85 (100)
T smart00450 53 LDKDKPVVVYC---RSGNRSAKAAWLLRELGFKNVY 85 (100)
T ss_pred CCCCCeEEEEe---CCCcHHHHHHHHHHHcCCCceE
Confidence 34788999998 5788889999999999988744
No 104
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=61.20 E-value=17 Score=25.19 Aligned_cols=33 Identities=18% Similarity=0.089 Sum_probs=25.9
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVEC 181 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v 181 (211)
.++++|+++++ +|.....++..|+..|.+.|+.
T Consensus 54 ~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~ 86 (96)
T cd01529 54 GRATRYVLTCD---GSLLARFAAQELLALGGKPVAL 86 (96)
T ss_pred CCCCCEEEEeC---ChHHHHHHHHHHHHcCCCCEEE
Confidence 46788999975 6777788888899999876643
No 105
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=61.03 E-value=16 Score=25.03 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=28.1
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEE
Q 028297 145 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 180 (211)
Q Consensus 145 ~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~ 180 (211)
+.+++.++++.. +|.+...++..|++.|...+.
T Consensus 53 ~~~~~~ivv~c~---~g~~s~~a~~~l~~~G~~~v~ 85 (96)
T cd01444 53 LDRDRPVVVYCY---HGNSSAQLAQALREAGFTDVR 85 (96)
T ss_pred cCCCCCEEEEeC---CCChHHHHHHHHHHcCCceEE
Confidence 347889999988 899999999999999987764
No 106
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=53.72 E-value=39 Score=29.38 Aligned_cols=44 Identities=23% Similarity=0.142 Sum_probs=39.4
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCch
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPE 189 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~ 189 (211)
+.||+|+||--=-.......+..+.|+.+||++.+.+.+-+.+.
T Consensus 81 L~g~~V~vV~~p~a~~~~~~~v~~~L~~AGA~v~g~i~lt~~~~ 124 (308)
T PF11382_consen 81 LTGRSVAVVTLPGADDEDVDAVRELLEQAGATVTGRITLTDKFL 124 (308)
T ss_pred cCCCEEEEEEcCCCChHHHHHHHHHHHHCCCeEEEEEEEchhhc
Confidence 59999999997777889999999999999999999999987763
No 107
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=53.18 E-value=28 Score=29.74 Aligned_cols=33 Identities=39% Similarity=0.496 Sum_probs=28.3
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 182 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~ 182 (211)
.+|++|+|+ .+|++.++++..|.+.|++.+.++
T Consensus 123 ~~~k~vlvl----GaGGaarai~~aL~~~G~~~i~I~ 155 (282)
T TIGR01809 123 LAGFRGLVI----GAGGTSRAAVYALASLGVTDITVI 155 (282)
T ss_pred cCCceEEEE----cCcHHHHHHHHHHHHcCCCeEEEE
Confidence 378999865 899999999999999999876654
No 108
>PRK12342 hypothetical protein; Provisional
Probab=51.90 E-value=59 Score=27.54 Aligned_cols=42 Identities=10% Similarity=0.095 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhcCCcEEEEe----cCCccchHHHHHHHhCCCeEE
Q 028297 72 DTVDIFVDRYRDMGISVVAGI----EARGFVFGPSIALAIGAKFVP 113 (211)
Q Consensus 72 ~~~~~la~~i~~~~~d~Iv~i----~~gG~~~A~~lA~~L~~p~~~ 113 (211)
.++..++..++..++|+|++= +...-..+..+|..||+|++.
T Consensus 96 ata~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt 141 (254)
T PRK12342 96 DTAKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVIN 141 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEe
Confidence 557777777776679988864 333345788999999999865
No 109
>COG3535 Uncharacterized conserved protein [Function unknown]
Probab=51.70 E-value=1.7e+02 Score=25.91 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhhcCCcEEEEecCCccch--HHHHHHHhCCCeEEeecCCC-CCCceeeeeeeee-cCceeEEEecC
Q 028297 68 KAFKDTVDIFVDRYRDMGISVVAGIEARGFVF--GPSIALAIGAKFVPLRKPNK-LPGEVISEAYVLE-YGTDRLEMHVG 143 (211)
Q Consensus 68 ~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~--A~~lA~~L~~p~~~~~k~~~-~~~~~~~~~~~~~-~~~~~~~~~~~ 143 (211)
+......+.+-+.+ +.+++.|+|++.||+|- --..|..+|+|++...--.+ .|.-+. .++... .....+.+ -
T Consensus 79 ~e~~ra~e~~~~~~-~k~v~ai~s~EiGG~Ns~ip~v~aa~~g~PvVD~DgmGRAfPElqM-tTf~~~g~~~tPlvi--~ 154 (357)
T COG3535 79 DEAIRAFEVLEDYL-GKPVDAIISIEIGGINSLIPLVVAAQLGLPVVDGDGMGRAFPELQM-TTFYLHGLPATPLVI--C 154 (357)
T ss_pred HHHHHHHHHHHHHh-CCceeEEEEeecCCcchhHHHHHHHhcCCceecCCcccccCcceEE-EEEEEcCCCCCceEE--E
Confidence 33334444444433 45789999999999973 33446678999887542221 121110 000000 00001111 1
Q ss_pred CcCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEE
Q 028297 144 AIEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 182 (211)
Q Consensus 144 ~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~ 182 (211)
+ .+|..+++ ..++...+-+.+..+.-+.|+..--+.
T Consensus 155 d-~~gn~~i~--e~v~n~w~ERiAR~~tv~~GG~~~~a~ 190 (357)
T COG3535 155 D-ERGNRVII--ETVSNKWAERIARAATVEMGGSAAVAL 190 (357)
T ss_pred e-cCCCEEEE--EeecchhHHHHHHHHHHHcCCeEEEEE
Confidence 2 36666665 888889999999899999998754333
No 110
>PRK04195 replication factor C large subunit; Provisional
Probab=48.75 E-value=1.3e+02 Score=27.77 Aligned_cols=111 Identities=14% Similarity=0.242 Sum_probs=60.1
Q ss_pred eHHHHhcCHHHHHHHHHHHHHHHhhc--CCcEEEEecCCcc-chHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCc
Q 028297 59 DITTLLLDHKAFKDTVDIFVDRYRDM--GISVVAGIEARGF-VFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGT 135 (211)
Q Consensus 59 d~~~l~~~~~~~~~~~~~la~~i~~~--~~d~Iv~i~~gG~-~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~ 135 (211)
.+..+..+......+..++..+..+. ..-++.|+|..|= .+|..+|+.++.++..+.-........... ...
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~-----~i~ 86 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIER-----VAG 86 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHH-----HHH
Confidence 45566677777766666665544332 3356778887775 489999999998766543211000000000 000
Q ss_pred eeEEEecCCcC-CCCEEEEEecccc-ch----HHHHHHHHHHHhCCC
Q 028297 136 DRLEMHVGAIE-PGERALVIDDLVA-TG----GTLSAAVRLLERMGA 176 (211)
Q Consensus 136 ~~~~~~~~~~~-~gk~VLIVDDiit-TG----~Tl~~a~~~L~~~Ga 176 (211)
.... ...+. .+++|||+||+=. ++ +.+.+..+.+++.+.
T Consensus 87 ~~~~--~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~ 131 (482)
T PRK04195 87 EAAT--SGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQ 131 (482)
T ss_pred Hhhc--cCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCC
Confidence 0000 01121 3589999998732 12 346677777775543
No 111
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=48.16 E-value=37 Score=23.54 Aligned_cols=29 Identities=24% Similarity=0.314 Sum_probs=24.1
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCe
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAE 177 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~ 177 (211)
.+++.|+++ +.+|.....+++.|++.|.+
T Consensus 59 ~~~~~ivv~---C~~G~rs~~aa~~L~~~G~~ 87 (100)
T cd01523 59 PDDQEVTVI---CAKEGSSQFVAELLAERGYD 87 (100)
T ss_pred CCCCeEEEE---cCCCCcHHHHHHHHHHcCce
Confidence 467788876 66888889999999999987
No 112
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=47.81 E-value=53 Score=25.46 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCCcEEEEec-CCccchHHHHHHHhCCCeEE
Q 028297 72 DTVDIFVDRYRDMGISVVAGIE-ARGFVFGPSIALAIGAKFVP 113 (211)
Q Consensus 72 ~~~~~la~~i~~~~~d~Iv~i~-~gG~~~A~~lA~~L~~p~~~ 113 (211)
..++.+++.+++.++++|+.+. ..|-.+|..+|.+||.|++.
T Consensus 70 ~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vt 112 (168)
T cd01715 70 PYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLIS 112 (168)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCcee
Confidence 4555666666666788888766 46668999999999998854
No 113
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=47.12 E-value=42 Score=28.43 Aligned_cols=42 Identities=7% Similarity=0.073 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhcCCcEEEEe----cCCccchHHHHHHHhCCCeEE
Q 028297 72 DTVDIFVDRYRDMGISVVAGI----EARGFVFGPSIALAIGAKFVP 113 (211)
Q Consensus 72 ~~~~~la~~i~~~~~d~Iv~i----~~gG~~~A~~lA~~L~~p~~~ 113 (211)
.++..|+..+++.++|+|++= +...-..+..+|..||+|++.
T Consensus 99 ~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt 144 (256)
T PRK03359 99 QTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAIN 144 (256)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCcee
Confidence 667777777777789988863 444446788999999999855
No 114
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=46.81 E-value=42 Score=23.32 Aligned_cols=32 Identities=22% Similarity=0.176 Sum_probs=25.4
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 180 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~ 180 (211)
.++++|+++++ +|..-..++..|++.|.+.++
T Consensus 59 ~~~~~ivvyC~---~G~rs~~a~~~L~~~G~~~v~ 90 (101)
T cd01518 59 LKGKKVLMYCT---GGIRCEKASAYLKERGFKNVY 90 (101)
T ss_pred cCCCEEEEECC---CchhHHHHHHHHHHhCCccee
Confidence 46788999875 777777888899999987654
No 115
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=44.88 E-value=56 Score=26.42 Aligned_cols=42 Identities=14% Similarity=0.230 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCC----ccchHHHHHHHhCCCeEE
Q 028297 72 DTVDIFVDRYRDMGISVVAGIEAR----GFVFGPSIALAIGAKFVP 113 (211)
Q Consensus 72 ~~~~~la~~i~~~~~d~Iv~i~~g----G~~~A~~lA~~L~~p~~~ 113 (211)
..++.+++.+++.++++|+.+... |-.+|..+|.+||.+++.
T Consensus 95 ~~a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvs 140 (202)
T cd01714 95 ATAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQIT 140 (202)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccc
Confidence 444555555555578888887654 778999999999998754
No 116
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=44.53 E-value=70 Score=28.66 Aligned_cols=52 Identities=19% Similarity=0.178 Sum_probs=34.4
Q ss_pred eHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccch-HHHHHHHhCCC
Q 028297 59 DITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVF-GPSIALAIGAK 110 (211)
Q Consensus 59 d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~-A~~lA~~L~~p 110 (211)
.+...+..-.......+.+.+.+.+.++|+++.+|.-||++ -...++..|.+
T Consensus 56 G~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~ 108 (373)
T PF02684_consen 56 GFVEVLKKLPKLKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIP 108 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCC
Confidence 33444444344455666777777777999999999999984 22344456666
No 117
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=43.90 E-value=30 Score=27.47 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=20.4
Q ss_pred CCCEEEEEeccccchHHHHHHH-HHHHhCCCeEEEEEEEEe
Q 028297 147 PGERALVIDDLVATGGTLSAAV-RLLERMGAEVVECACVVG 186 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~-~~L~~~Ga~~V~v~~~~~ 186 (211)
.| .=+||||++..+.-+..+. ++|. |..+..+.+.+.
T Consensus 82 aG-~~VIvD~v~~~~~~l~d~l~~~L~--~~~vl~VgV~Cp 119 (174)
T PF07931_consen 82 AG-NNVIVDDVFLGPRWLQDCLRRLLA--GLPVLFVGVRCP 119 (174)
T ss_dssp TT--EEEEEE--TTTHHHHHHHHHHHT--TS-EEEEEEE--
T ss_pred CC-CCEEEecCccCcHHHHHHHHHHhC--CCceEEEEEECC
Confidence 45 5578999999998777776 5564 445444444444
No 118
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=42.40 E-value=81 Score=30.27 Aligned_cols=55 Identities=16% Similarity=0.009 Sum_probs=36.2
Q ss_pred eHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccch-HHHHHHHhCC--CeEE
Q 028297 59 DITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVF-GPSIALAIGA--KFVP 113 (211)
Q Consensus 59 d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~-A~~lA~~L~~--p~~~ 113 (211)
.+...+..-.......+.+.+.+.+.++|+++.+|.-||++ -...++..|+ |.++
T Consensus 284 G~~EVL~~l~~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviy 341 (608)
T PRK01021 284 GFWEVLLALFKLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVH 341 (608)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEE
Confidence 33344443344445566666777777899999999999985 3344566675 7755
No 119
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]
Probab=41.31 E-value=73 Score=28.38 Aligned_cols=55 Identities=24% Similarity=0.306 Sum_probs=42.2
Q ss_pred CEEEEEeccccc-----hHHHHHHHHHHHhCCCeEEEEEEEEeCchhhcccCCCCeEEEEcc
Q 028297 149 ERALVIDDLVAT-----GGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGKPLYILVEP 205 (211)
Q Consensus 149 k~VLIVDDiitT-----G~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~~~~~l~~~~l~sl~~~ 205 (211)
..+||.|..+-+ +.++...++..++.|++++-+-+-|+.++-.+.|-| +..++.+
T Consensus 290 e~LLv~De~lr~~~~~~re~~~~ll~~ve~~ggkV~Ivs~~he~Ge~Lk~lGG--iaaILRf 349 (352)
T COG1537 290 ETLLVTDELLRSDDVEEREDVEELLEEVESMGGKVVIVSTEHEPGERLKALGG--IAAILRF 349 (352)
T ss_pred eeEEeehhhhcccchhhHHHHHHHHHHHHHcCCeEEEEecCCcchHHHHhccC--eEEEEEe
Confidence 689999998887 589999999999999998887777777643333434 5555554
No 120
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=40.53 E-value=69 Score=25.02 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCCcEEEEec-CCccchHHHHHHHhCCCeEE
Q 028297 72 DTVDIFVDRYRDMGISVVAGIE-ARGFVFGPSIALAIGAKFVP 113 (211)
Q Consensus 72 ~~~~~la~~i~~~~~d~Iv~i~-~gG~~~A~~lA~~L~~p~~~ 113 (211)
..++.+++.+++.++++|+... ..|-.++..+|.+||.|+..
T Consensus 78 ~~a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vs 120 (181)
T cd01985 78 ATAKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQIS 120 (181)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcce
Confidence 4455555556656788887765 46678999999999998854
No 121
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=39.97 E-value=63 Score=22.38 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=25.4
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCeEEE
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 180 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~ 180 (211)
++++++++++ +|.....++..|.+.|...+.
T Consensus 57 ~~~~vv~~c~---~g~rs~~~~~~l~~~G~~~v~ 87 (101)
T cd01528 57 PDKDIVVLCH---HGGRSMQVAQWLLRQGFENVY 87 (101)
T ss_pred CCCeEEEEeC---CCchHHHHHHHHHHcCCccEE
Confidence 5789999975 688888889999999987664
No 122
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=39.74 E-value=49 Score=25.40 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhcCCcEEEEec-CCccchHHHHHHHhCCCeEE
Q 028297 72 DTVDIFVDRYRDMGISVVAGIE-ARGFVFGPSIALAIGAKFVP 113 (211)
Q Consensus 72 ~~~~~la~~i~~~~~d~Iv~i~-~gG~~~A~~lA~~L~~p~~~ 113 (211)
..++.+++.+++.++++|+.+. ..|-.++..+|.+|+.|++.
T Consensus 77 ~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~ 119 (164)
T PF01012_consen 77 AYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVT 119 (164)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccc
Confidence 4555666666666888887776 35566999999999999855
No 123
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=39.03 E-value=49 Score=22.66 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=23.4
Q ss_pred CCCEEEEEeccccchHH--HHHHHHHHHhCCCeEEE
Q 028297 147 PGERALVIDDLVATGGT--LSAAVRLLERMGAEVVE 180 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~T--l~~a~~~L~~~Ga~~V~ 180 (211)
+.++|+|+.+ +|.. ...++..|++.|.+.++
T Consensus 49 ~~~~ivl~c~---~G~~~~s~~aa~~L~~~G~~~v~ 81 (92)
T cd01532 49 RDTPIVVYGE---GGGEDLAPRAARRLSELGYTDVA 81 (92)
T ss_pred CCCeEEEEeC---CCCchHHHHHHHHHHHcCccCEE
Confidence 4678888865 5543 57788899999988775
No 124
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=38.98 E-value=98 Score=27.48 Aligned_cols=42 Identities=17% Similarity=0.153 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCccchHH-HHHHHhCCCeEEe
Q 028297 73 TVDIFVDRYRDMGISVVAGIEARGFVFGP-SIALAIGAKFVPL 114 (211)
Q Consensus 73 ~~~~la~~i~~~~~d~Iv~i~~gG~~~A~-~lA~~L~~p~~~~ 114 (211)
......+.+++.++|+|++++.-|+++.- .-|+.+|+|.+..
T Consensus 77 ~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 77 IRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 33344455666789999999987887432 3466789998764
No 125
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=38.63 E-value=59 Score=22.52 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=26.3
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEE
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVEC 181 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v 181 (211)
+++.|+++++ +|.+...++..|+..|-+.|..
T Consensus 65 ~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~~ 96 (106)
T cd01519 65 KDKELIFYCK---AGVRSKAAAELARSLGYENVGN 96 (106)
T ss_pred CCCeEEEECC---CcHHHHHHHHHHHHcCCcccee
Confidence 5789999965 6888888999999999887654
No 126
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=37.34 E-value=59 Score=22.26 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=24.4
Q ss_pred CEEEEEeccccchHHHHHHHHHHHhC-C-CeEEEEEE
Q 028297 149 ERALVIDDLVATGGTLSAAVRLLERM-G-AEVVECAC 183 (211)
Q Consensus 149 k~VLIVDDiitTG~Tl~~a~~~L~~~-G-a~~V~v~~ 183 (211)
..+.+++|...+=.++.++.+.|++. + .+.+.++.
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G 48 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFG 48 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEc
Confidence 35677777999999999999999987 3 34444444
No 127
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=37.31 E-value=36 Score=25.48 Aligned_cols=49 Identities=31% Similarity=0.352 Sum_probs=31.7
Q ss_pred cccchHHHHHHHHH----HHhCCCeEEEEEEEEeCch-h-------hcccCCCCeEEEEcc
Q 028297 157 LVATGGTLSAAVRL----LERMGAEVVECACVVGLPE-G-------QRRLDGKPLYILVEP 205 (211)
Q Consensus 157 iitTG~Tl~~a~~~----L~~~Ga~~V~v~~~~~~~~-~-------~~~l~~~~l~sl~~~ 205 (211)
--.||.|+.++.+. |+.+|.++..--......+ + .-+++|.||+.++..
T Consensus 18 C~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~~~~S~~I~inG~piE~~l~~ 78 (120)
T PF10865_consen 18 CGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQPLESPTIRINGRPIEDLLGA 78 (120)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhcccCCCeeeECCEehhHhhCC
Confidence 34699999999988 5678888665444443332 3 113458888777643
No 128
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=36.99 E-value=75 Score=26.87 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=27.2
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 182 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~ 182 (211)
.++|+|+|+ .+|++-++++..|.+.|+..|.++
T Consensus 121 ~~~k~vlVl----GaGg~a~ai~~aL~~~g~~~V~v~ 153 (278)
T PRK00258 121 LKGKRILIL----GAGGAARAVILPLLDLGVAEITIV 153 (278)
T ss_pred CCCCEEEEE----cCcHHHHHHHHHHHHcCCCEEEEE
Confidence 478999876 689999999999999997665444
No 129
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=36.68 E-value=99 Score=21.72 Aligned_cols=26 Identities=42% Similarity=0.556 Sum_probs=18.8
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCC
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMG 175 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~G 175 (211)
.+.+||+||| .-.......+.|...|
T Consensus 4 ~~~~vLivdD---~~~~~~~~~~~l~~~g 29 (130)
T COG0784 4 SGLRVLVVDD---EPVNRRLLKRLLEDLG 29 (130)
T ss_pred CCcEEEEEcC---CHHHHHHHHHHHHHcC
Confidence 5789999999 4445555666677777
No 130
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=36.65 E-value=61 Score=27.75 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=27.8
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 182 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~ 182 (211)
.+||+++| +.+|++.++++-.|.+.|++.+.++
T Consensus 125 ~~~k~vli----lGaGGaarAi~~aL~~~g~~~i~i~ 157 (283)
T PRK14027 125 AKLDSVVQ----VGAGGVGNAVAYALVTHGVQKLQVA 157 (283)
T ss_pred cCCCeEEE----ECCcHHHHHHHHHHHHCCCCEEEEE
Confidence 46888884 6899999999999999999876554
No 131
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.13 E-value=94 Score=19.84 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=27.7
Q ss_pred EEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeC
Q 028297 150 RALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGL 187 (211)
Q Consensus 150 ~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~ 187 (211)
+++|+.++ ||.-+....+.+++.|.....-+++...
T Consensus 2 ~~ll~~g~--~~~el~~~l~~~r~~~~~~~~kAvlT~t 37 (58)
T PF12646_consen 2 EFLLFSGF--SGEELDKFLDALRKAGIPIPLKAVLTPT 37 (58)
T ss_pred CEEEECCC--CHHHHHHHHHHHHHcCCCcceEEEECCC
Confidence 46677777 8899999999999999966555555443
No 132
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=35.85 E-value=96 Score=28.23 Aligned_cols=58 Identities=19% Similarity=0.096 Sum_probs=44.2
Q ss_pred eeheeHHHHhcCHHHHHHHHHHHHHHHhhcCCcEEEEecCCccchH-HHHH---HHhCCCeEEe
Q 028297 55 IMFQDITTLLLDHKAFKDTVDIFVDRYRDMGISVVAGIEARGFVFG-PSIA---LAIGAKFVPL 114 (211)
Q Consensus 55 i~~~d~~~l~~~~~~~~~~~~~la~~i~~~~~d~Iv~i~~gG~~~A-~~lA---~~L~~p~~~~ 114 (211)
....+++.++.++...+.+++.+..... +.|.|+.|.-=|...+ ..++ +.||+++..+
T Consensus 188 ~~~~~iAr~ld~~~~~~~l~~~l~~~~~--~~~~V~~PavIGle~a~~v~~~L~~~LG~~V~~v 249 (422)
T PRK05329 188 FRAVNIARLLDDPENREALADALKPLAG--DAEAVLLPAVLGLDDDAAVLAELEEALGCPVFEL 249 (422)
T ss_pred ccHHHHHHHhCChhHHHHHHHHHHHhcC--CCCEEEECceecCCChHHHHHHHHHHHCCCEEEe
Confidence 3467899999999887788887766543 4689999988888877 5444 5799998765
No 133
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=34.84 E-value=71 Score=22.12 Aligned_cols=31 Identities=13% Similarity=0.182 Sum_probs=23.8
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCeEEE
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 180 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~ 180 (211)
.++.|++++ .+|.....++..|+..|.+.|+
T Consensus 64 ~~~~vv~~c---~~g~~s~~~a~~L~~~G~~~v~ 94 (105)
T cd01525 64 KGKIIVIVS---HSHKHAALFAAFLVKCGVPRVC 94 (105)
T ss_pred cCCeEEEEe---CCCccHHHHHHHHHHcCCCCEE
Confidence 367888876 4666777788899999998765
No 134
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=34.20 E-value=1.2e+02 Score=24.37 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCC--cEEEEecCCccchHHHHHHHhCCCeEEe
Q 028297 75 DIFVDRYRDMGI--SVVAGIEARGFVFGPSIALAIGAKFVPL 114 (211)
Q Consensus 75 ~~la~~i~~~~~--d~Iv~i~~gG~~~A~~lA~~L~~p~~~~ 114 (211)
..+.+.+.+... .+++|...||+ .|..+|..+++|-+.+
T Consensus 47 ~~l~~~i~~~~~~~~~liGSSlGG~-~A~~La~~~~~~avLi 87 (187)
T PF05728_consen 47 AQLEQLIEELKPENVVLIGSSLGGF-YATYLAERYGLPAVLI 87 (187)
T ss_pred HHHHHHHHhCCCCCeEEEEEChHHH-HHHHHHHHhCCCEEEE
Confidence 333344444332 59999999997 6778999999987654
No 135
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=33.25 E-value=80 Score=28.24 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=29.8
Q ss_pred HHHHHHHhhcCCcEEEEecCCcc-chHHHHHHHhCCCeEEe
Q 028297 75 DIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPL 114 (211)
Q Consensus 75 ~~la~~i~~~~~d~Iv~i~~gG~-~~A~~lA~~L~~p~~~~ 114 (211)
+.+.....+.+.|+|+++-.|-. -.|..+|..+++|++.+
T Consensus 74 ~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~pfIsv 114 (360)
T COG0371 74 ERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGLPFISV 114 (360)
T ss_pred HHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHcCCCEEEe
Confidence 33333343346899999987664 58999999999999875
No 136
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=32.70 E-value=89 Score=24.09 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=24.8
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 183 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~ 183 (211)
.+||+|+|+-|-= |----+..+.++..|+.++...+
T Consensus 3 l~gkKviiiGdRD--GiPgpAie~c~~~~gaevvfs~T 38 (150)
T PF04723_consen 3 LEGKKVIIIGDRD--GIPGPAIEECVKTAGAEVVFSST 38 (150)
T ss_pred cCCcEEEEEecCC--CCCcHHHHHHHHhcCceEEEEee
Confidence 4899999998853 33334455566788998877654
No 137
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=32.67 E-value=94 Score=20.97 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=23.3
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHhCCC
Q 028297 145 IEPGERALVIDDLVATGGTLSAAVRLLERMGA 176 (211)
Q Consensus 145 ~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga 176 (211)
+.++++++++.+ +|.....++..|++.|.
T Consensus 48 ~~~~~~vvl~c~---~g~~a~~~a~~L~~~G~ 76 (90)
T cd01524 48 LPKDKEIIVYCA---VGLRGYIAARILTQNGF 76 (90)
T ss_pred cCCCCcEEEEcC---CChhHHHHHHHHHHCCC
Confidence 345778888865 58888888999999998
No 138
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=32.44 E-value=1.1e+02 Score=27.20 Aligned_cols=55 Identities=22% Similarity=0.244 Sum_probs=38.8
Q ss_pred CEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCchhhcccCCCCeEEEEcc
Q 028297 149 ERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLPEGQRRLDGKPLYILVEP 205 (211)
Q Consensus 149 k~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~~~~~~l~~~~l~sl~~~ 205 (211)
+.+||-|+.+.+-.-+...++..++.|+++..+-.-|+.+.-...|-| +-.++.+
T Consensus 295 etLLIsD~l~~~r~~~~~l~~~v~~~gg~V~i~Ss~~e~G~qL~~lgG--iaAiLRy 349 (351)
T TIGR00111 295 EYLLVTDKVLVQREEIEKLLDSVESMGGKVVILSTEHELGKQLDSLGG--IAGILRF 349 (351)
T ss_pred eEEEEecchhhhHHHHHHHHHHHHHcCCEEEEEcCCCccHHHHhhCCC--EEEEEec
Confidence 689999999777667888899999999997766666666542223333 5566554
No 139
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=32.37 E-value=3.5e+02 Score=23.83 Aligned_cols=40 Identities=13% Similarity=0.022 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCCcEEEEecCCccchHHHHHHHh-CCCeEEe
Q 028297 72 DTVDIFVDRYRDMGISVVAGIEARGFVFGPSIALAI-GAKFVPL 114 (211)
Q Consensus 72 ~~~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L-~~p~~~~ 114 (211)
-.+..+++++...++|+|+++.. +-|..+..+. ++|.++.
T Consensus 75 ~~a~~iarql~~~~~dviv~i~t---p~Aq~~~s~~~~iPVV~a 115 (322)
T COG2984 75 GTAAQIARQLVGDKPDVIVAIAT---PAAQALVSATKTIPVVFA 115 (322)
T ss_pred HHHHHHHHHhhcCCCcEEEecCC---HHHHHHHHhcCCCCEEEE
Confidence 44556666677778899998865 6667776665 5788763
No 140
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=32.35 E-value=82 Score=27.02 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=27.7
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 183 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~ 183 (211)
.+||++|| +.+|++.++++-.|...|++.+.++.
T Consensus 122 ~~~k~vlv----lGaGGaarAi~~~l~~~g~~~i~i~n 155 (288)
T PRK12749 122 IKGKTMVL----LGAGGASTAIGAQGAIEGLKEIKLFN 155 (288)
T ss_pred cCCCEEEE----ECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 47889885 57999999999999999998765554
No 141
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=32.28 E-value=80 Score=21.66 Aligned_cols=31 Identities=10% Similarity=0.043 Sum_probs=23.9
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVV 179 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V 179 (211)
.+++.|+++ +.+|.....++..|++.|...+
T Consensus 52 ~~~~~iv~~---c~~g~~s~~~~~~L~~~g~~~v 82 (99)
T cd01527 52 VGANAIIFH---CRSGMRTQQNAERLAAISAGEA 82 (99)
T ss_pred CCCCcEEEE---eCCCchHHHHHHHHHHcCCccE
Confidence 356777774 5688888889999999998744
No 142
>PF14502 HTH_41: Helix-turn-helix domain
Probab=31.65 E-value=65 Score=20.13 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=17.1
Q ss_pred chHHHHHHHHHHHhCCCeEE
Q 028297 160 TGGTLSAAVRLLERMGAEVV 179 (211)
Q Consensus 160 TG~Tl~~a~~~L~~~Ga~~V 179 (211)
+=+|+..|.+.|++.||-.+
T Consensus 19 s~GtiQ~Alk~Le~~gaI~L 38 (48)
T PF14502_consen 19 SRGTIQNALKFLEENGAIKL 38 (48)
T ss_pred chhHHHHHHHHHHHCCcEEe
Confidence 55899999999999998654
No 143
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=31.57 E-value=1.1e+02 Score=20.92 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=22.4
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCe
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAE 177 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~ 177 (211)
++++|++..+ +|.....++..|+..|.+
T Consensus 55 ~~~~iv~~c~---~G~rs~~aa~~L~~~G~~ 82 (95)
T cd01534 55 RGARIVLADD---DGVRADMTASWLAQMGWE 82 (95)
T ss_pred CCCeEEEECC---CCChHHHHHHHHHHcCCE
Confidence 4678888864 677777888889999987
No 144
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=31.55 E-value=51 Score=22.66 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=25.1
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 180 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~ 180 (211)
.++++|++.++ +|.....++..|+..|.+.+.
T Consensus 59 ~~~~~ivv~c~---~g~~s~~~~~~l~~~G~~~v~ 90 (103)
T cd01447 59 AEDKPFVFYCA---SGWRSALAGKTLQDMGLKPVY 90 (103)
T ss_pred CCCCeEEEEcC---CCCcHHHHHHHHHHcChHHhE
Confidence 46789999975 577777888999999987554
No 145
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=31.32 E-value=2.4e+02 Score=21.49 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=38.8
Q ss_pred chHHHHHHHhCCCeEEeecCC-CCCCceeeeeeeeecCceeEEEecCCcCCCCEEEEEeccccc-hHHHHHHHHHHHhC
Q 028297 98 VFGPSIALAIGAKFVPLRKPN-KLPGEVISEAYVLEYGTDRLEMHVGAIEPGERALVIDDLVAT-GGTLSAAVRLLERM 174 (211)
Q Consensus 98 ~~A~~lA~~L~~p~~~~~k~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiitT-G~Tl~~a~~~L~~~ 174 (211)
.+|..+|+.+|..+.-+.-.. -.+....-. .-.....+.+.+..+.+ ..+++++|.|=.. -+|-.+..+++.+.
T Consensus 14 ~la~~lA~~~~~~f~RIq~tpdllPsDi~G~-~v~~~~~~~f~~~~GPi--f~~ill~DEiNrappktQsAlLeam~Er 89 (131)
T PF07726_consen 14 TLAKALARSLGLSFKRIQFTPDLLPSDILGF-PVYDQETGEFEFRPGPI--FTNILLADEINRAPPKTQSALLEAMEER 89 (131)
T ss_dssp HHHHHHHHHTT--EEEEE--TT--HHHHHEE-EEEETTTTEEEEEE-TT---SSEEEEETGGGS-HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCceeEEEecCCCCcccceee-eeeccCCCeeEeecChh--hhceeeecccccCCHHHHHHHHHHHHcC
Confidence 477888888888765443221 112211111 11111234666666665 3679999999654 46666677777765
No 146
>PRK04940 hypothetical protein; Provisional
Probab=31.12 E-value=1.7e+02 Score=23.54 Aligned_cols=30 Identities=17% Similarity=0.419 Sum_probs=25.5
Q ss_pred CCcEEEEecCCccchHHHHHHHhCCCeEEee
Q 028297 85 GISVVAGIEARGFVFGPSIALAIGAKFVPLR 115 (211)
Q Consensus 85 ~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~~~ 115 (211)
+...+||...||| .|..+|...++|-+.+.
T Consensus 60 ~~~~liGSSLGGy-yA~~La~~~g~~aVLiN 89 (180)
T PRK04940 60 ERPLICGVGLGGY-WAERIGFLCGIRQVIFN 89 (180)
T ss_pred CCcEEEEeChHHH-HHHHHHHHHCCCEEEEC
Confidence 3579999999997 78999999999977653
No 147
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=30.96 E-value=3e+02 Score=24.07 Aligned_cols=33 Identities=18% Similarity=0.061 Sum_probs=24.2
Q ss_pred HHhhcCCcEEEEecCCccc--hHHHHHHHhCCCeEEe
Q 028297 80 RYRDMGISVVAGIEARGFV--FGPSIALAIGAKFVPL 114 (211)
Q Consensus 80 ~i~~~~~d~Iv~i~~gG~~--~A~~lA~~L~~p~~~~ 114 (211)
.+++.++|+|++ .||+. ++...|..+++|....
T Consensus 86 i~~~~kPdvvi~--~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 86 RIRKLKPDVIFS--KGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHhcCCCEEEe--cCchhhHHHHHHHHHcCCCEEEE
Confidence 355668999999 77775 4567777889998653
No 148
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=30.79 E-value=1.3e+02 Score=21.11 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=10.2
Q ss_pred cchHHHHHHHhCCC
Q 028297 97 FVFGPSIALAIGAK 110 (211)
Q Consensus 97 ~~~A~~lA~~L~~p 110 (211)
-.+|..+|..||..
T Consensus 63 n~lA~~iA~~lga~ 76 (84)
T PF11760_consen 63 NELARQIAELLGAQ 76 (84)
T ss_dssp HHHHHHHHHHTT-E
T ss_pred HHHHHHHHHHhCCE
Confidence 45888899988863
No 149
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=30.53 E-value=2e+02 Score=24.22 Aligned_cols=104 Identities=14% Similarity=0.122 Sum_probs=44.5
Q ss_pred HHHHHHHHhhcCCcEEEEecCCccchHHHHHHHh-C-CCeEEeecCCCC-CCceeeeeeeeecCcee---------EEEe
Q 028297 74 VDIFVDRYRDMGISVVAGIEARGFVFGPSIALAI-G-AKFVPLRKPNKL-PGEVISEAYVLEYGTDR---------LEMH 141 (211)
Q Consensus 74 ~~~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L-~-~p~~~~~k~~~~-~~~~~~~~~~~~~~~~~---------~~~~ 141 (211)
+..+++++...++|+|+++.. +-+..+++.+ + +|++..--.... .+-..+......+-.+. +.+-
T Consensus 48 ~~~~~~~l~~~~~DlIi~~gt---~aa~~~~~~~~~~iPVVf~~V~dp~~~~l~~~~~~~~~nvTGv~~~~~~~~~l~l~ 124 (294)
T PF04392_consen 48 LRQIARKLKAQKPDLIIAIGT---PAAQALAKHLKDDIPVVFCGVSDPVGAGLVDSLDRPGKNVTGVSERPPIEKQLELI 124 (294)
T ss_dssp HHHHHHHHCCTS-SEEEEESH---HHHHHHHHH-SS-S-EEEECES-TTTTTS-S-SSS--SSEEEEEE---HHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEeCc---HHHHHHHHhcCCCcEEEEEeccChhhhhccccccCCCCCEEEEECCcCHHHHHHHH
Confidence 344445566678999999854 3345555554 4 788764321100 00000000000000111 1100
Q ss_pred cCCcCCCCEE-EEEeccccc-hHHHHHHHHHHHhCCCeEEE
Q 028297 142 VGAIEPGERA-LVIDDLVAT-GGTLSAAVRLLERMGAEVVE 180 (211)
Q Consensus 142 ~~~~~~gk~V-LIVDDiitT-G~Tl~~a~~~L~~~Ga~~V~ 180 (211)
..-.+.-|++ +|.|+--++ ......+.+..++.|.+.+.
T Consensus 125 ~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~ 165 (294)
T PF04392_consen 125 KKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVE 165 (294)
T ss_dssp HHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEE
T ss_pred HHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEE
Confidence 0112345888 566666553 35566666777788877543
No 150
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=28.59 E-value=1.2e+02 Score=25.76 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=27.3
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 183 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~ 183 (211)
.+||+++|+ .+|++-++++..|.+.|++.|.++.
T Consensus 124 ~~~k~vlI~----GAGGagrAia~~La~~G~~~V~I~~ 157 (289)
T PRK12548 124 VKGKKLTVI----GAGGAATAIQVQCALDGAKEITIFN 157 (289)
T ss_pred cCCCEEEEE----CCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 478888865 6789999999999999998766543
No 151
>cd01577 IPMI_Swivel Aconatase-like swivel domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=28.53 E-value=78 Score=22.49 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=32.8
Q ss_pred CEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCc
Q 028297 149 ERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLP 188 (211)
Q Consensus 149 k~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~ 188 (211)
-.||+.++=+.+|++=+.|+..|+..|.+.|-+-...+.+
T Consensus 18 ~~ilVaG~nfG~GSSRE~A~~al~~~Gi~avia~sFa~If 57 (91)
T cd01577 18 GDIIVAGKNFGCGSSREHAPWALKDAGIRAVIAESFARIF 57 (91)
T ss_pred CCEEEecCcccCCCcHHHHHHHHHHhCCCEEEEchHHHHH
Confidence 4799999999999999999999999998866554444333
No 152
>PLN02160 thiosulfate sulfurtransferase
Probab=28.49 E-value=97 Score=23.24 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=26.3
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 180 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~ 180 (211)
.++++|+++ +.+|.....++..|++.|.+.++
T Consensus 79 ~~~~~Iivy---C~sG~RS~~Aa~~L~~~G~~~v~ 110 (136)
T PLN02160 79 NPADDILVG---CQSGARSLKATTELVAAGYKKVR 110 (136)
T ss_pred CCCCcEEEE---CCCcHHHHHHHHHHHHcCCCCee
Confidence 366788887 57999999999999999987654
No 153
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=28.45 E-value=1.2e+02 Score=26.87 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=27.4
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVEC 181 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v 181 (211)
..||+|||| .+|.+-..+++.|.+.|++.+.+
T Consensus 172 l~~k~vLvI----GaGem~~l~a~~L~~~g~~~i~v 203 (338)
T PRK00676 172 SKKASLLFI----GYSEINRKVAYYLQRQGYSRITF 203 (338)
T ss_pred ccCCEEEEE----cccHHHHHHHHHHHHcCCCEEEE
Confidence 489999985 79999999999999999876543
No 154
>PRK11024 colicin uptake protein TolR; Provisional
Probab=27.47 E-value=1.8e+02 Score=21.86 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=29.3
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEE
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 183 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~ 183 (211)
+...|+|-=|==++=+++..+.+.++++|...+..++
T Consensus 102 ~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~~~v~l~t 138 (141)
T PRK11024 102 PKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMT 138 (141)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 3456777667777778999999999999999887653
No 155
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=27.38 E-value=1.2e+02 Score=21.23 Aligned_cols=29 Identities=17% Similarity=0.061 Sum_probs=23.0
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCeE
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAEV 178 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~ 178 (211)
+++.|+++ +.+|..-..++..|++.|.+.
T Consensus 65 ~~~~ivv~---C~~G~rs~~a~~~L~~~G~~~ 93 (109)
T cd01533 65 PRTPIVVN---CAGRTRSIIGAQSLINAGLPN 93 (109)
T ss_pred CCCeEEEE---CCCCchHHHHHHHHHHCCCCc
Confidence 56788888 567877777899999999864
No 156
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=27.35 E-value=1.4e+02 Score=21.11 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=25.5
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEE
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVEC 181 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v 181 (211)
+++.|+++ +.+|.....++..|++.|.+.+..
T Consensus 57 ~~~~vvly---C~~G~rS~~aa~~L~~~G~~~v~~ 88 (101)
T TIGR02981 57 KNDTVKLY---CNAGRQSGMAKDILLDMGYTHAEN 88 (101)
T ss_pred CCCeEEEE---eCCCHHHHHHHHHHHHcCCCeEEe
Confidence 45677776 567988999999999999887654
No 157
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=27.00 E-value=21 Score=21.66 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=16.5
Q ss_pred ccccchHHHHHHHHHHHhC
Q 028297 156 DLVATGGTLSAAVRLLERM 174 (211)
Q Consensus 156 DiitTG~Tl~~a~~~L~~~ 174 (211)
.+++.|.|+.+|.+.++++
T Consensus 23 g~~t~G~t~eea~~~~~ea 41 (48)
T PF03681_consen 23 GCFTQGDTLEEALENAKEA 41 (48)
T ss_dssp TCEEEESSHHHHHHHHHHH
T ss_pred ChhhcCCCHHHHHHHHHHH
Confidence 5679999999999998864
No 158
>PRK05320 rhodanese superfamily protein; Provisional
Probab=26.64 E-value=1.2e+02 Score=25.51 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=27.7
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCeEEE
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 180 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~ 180 (211)
++|+|+++ +++|.-...|+..|++.|.+.|+
T Consensus 174 kdk~Ivvy---C~~G~Rs~~Aa~~L~~~Gf~~V~ 204 (257)
T PRK05320 174 AGKTVVSF---CTGGIRCEKAAIHMQEVGIDNVY 204 (257)
T ss_pred CCCeEEEE---CCCCHHHHHHHHHHHHcCCcceE
Confidence 68889988 89999999999999999998765
No 159
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=26.61 E-value=1.2e+02 Score=23.43 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=22.8
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 183 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~ 183 (211)
.+||+++|+-|-=. --=-+..+.++..||.++...+
T Consensus 4 l~gKkviiiGdRDG--iPgpAie~c~k~~gaevvfs~T 39 (154)
T PRK13265 4 LEGKKVIIIGDRDG--IPGPAIEECVKTTGAEVVFSST 39 (154)
T ss_pred ccCcEEEEEecCCC--CCcHHHHHHHhccCceEEEEee
Confidence 47899998877532 2223334445668998877654
No 160
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=26.44 E-value=1.1e+02 Score=27.86 Aligned_cols=32 Identities=13% Similarity=0.204 Sum_probs=27.0
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVEC 181 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v 181 (211)
..|++|+| +.+|+.-..+++.|.+.|++.+.+
T Consensus 179 l~~kkvlv----iGaG~~a~~va~~L~~~g~~~I~V 210 (414)
T PRK13940 179 ISSKNVLI----IGAGQTGELLFRHVTALAPKQIML 210 (414)
T ss_pred ccCCEEEE----EcCcHHHHHHHHHHHHcCCCEEEE
Confidence 48999995 589999999999999999876543
No 161
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=26.43 E-value=1.1e+02 Score=21.52 Aligned_cols=32 Identities=25% Similarity=0.311 Sum_probs=25.4
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 180 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~ 180 (211)
.++++|++++ .+|.....++..|+..|-+.+.
T Consensus 76 ~~~~~iv~yc---~~g~~s~~~~~~l~~~G~~~v~ 107 (118)
T cd01449 76 TPDKPVIVYC---GSGVTACVLLLALELLGYKNVR 107 (118)
T ss_pred CCCCCEEEEC---CcHHHHHHHHHHHHHcCCCCee
Confidence 4788999996 4577778888999999987554
No 162
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=26.40 E-value=1.2e+02 Score=25.95 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=28.7
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCc
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLP 188 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~ 188 (211)
.++++|+| +.+|++-++++..|.+.|++.+. ++++.
T Consensus 125 ~~~k~vlI----lGaGGaaraia~aL~~~G~~~I~---I~nR~ 160 (284)
T PRK12549 125 ASLERVVQ----LGAGGAGAAVAHALLTLGVERLT---IFDVD 160 (284)
T ss_pred ccCCEEEE----ECCcHHHHHHHHHHHHcCCCEEE---EECCC
Confidence 47888885 58999999999999999987754 44554
No 163
>cd00404 Aconitase_swivel Aconitase swivel domain. Aconitase (aconitate hydratase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. This is the aconitase swivel domain, which undergoes swivelling conformational change in the enzyme mechanism. The aconitase family contains the following proteins: - Iron-responsive element binding protein (IRE-BP). IRE-BP is a cytosolic protein that binds to iron-responsive elements (IREs). IREs are stem-loop structures found in the 5'UTR of ferritin, and delta aminolevulinic acid synthase mRNAs, and in the 3'UTR of transferrin receptor mRNA. IRE-BP also express aconitase activity. - 3-isopropylmalate dehydratase (isopropylmalate isomerase), the enzyme that catalyzes the second step in the biosynthesis of leucine. - Homoaconitase (homoaconitate hydratase), an enzyme that participates in the alpha-aminoadipate pathway of lysine biosynthesis and that converts cis-homoaconitate into homoisocitric acid.
Probab=26.36 E-value=1.2e+02 Score=21.39 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=31.9
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEE
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVV 185 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~ 185 (211)
.+..||+.+.-+.+|++=..|+..++.+|.+.|-+-.+.
T Consensus 14 ~~~~iiVaG~nfG~GSSRE~A~~al~~~Gi~aVia~sfa 52 (88)
T cd00404 14 AGPGVVIGDENYGTGSSREHAALELRLLGGRAVIAKSFA 52 (88)
T ss_pred CCCEEEEecCCeecCCCHHHHHHHHHHhCCCEEEEeCHH
Confidence 446899999999999999999999999998854444333
No 164
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=26.17 E-value=2e+02 Score=21.11 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=29.7
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEE
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 183 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~ 183 (211)
+...|+|-=|==++=+++..+.+.++++|...+..++
T Consensus 92 ~~~~v~i~aD~~~~~~~vv~vmd~~~~~G~~~v~l~t 128 (129)
T TIGR02801 92 PDTPVLIRADKTVPYGEVIKVMALLKQAGIEKVGLIT 128 (129)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEee
Confidence 4456777777777778899999999999999887653
No 165
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=26.17 E-value=1.1e+02 Score=21.98 Aligned_cols=31 Identities=19% Similarity=0.160 Sum_probs=24.9
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCeEEE
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 180 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~ 180 (211)
++++|+++. .+|.....++..|++.|-+.+.
T Consensus 63 ~~~~ivv~C---~~G~rs~~aa~~L~~~G~~~v~ 93 (117)
T cd01522 63 KDRPVLLLC---RSGNRSIAAAEAAAQAGFTNVY 93 (117)
T ss_pred CCCeEEEEc---CCCccHHHHHHHHHHCCCCeEE
Confidence 677888875 5788888899999999987664
No 166
>COG5418 Predicted secreted protein [Function unknown]
Probab=25.79 E-value=1.2e+02 Score=23.71 Aligned_cols=46 Identities=7% Similarity=0.117 Sum_probs=28.2
Q ss_pred ecCCCCCCeeheeHHHHhcCHHHHHHHHHHHHHHHhhcCCc----EEEEec
Q 028297 47 FQIWWAAGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMGIS----VVAGIE 93 (211)
Q Consensus 47 ~~~~~~~~i~~~d~~~l~~~~~~~~~~~~~la~~i~~~~~d----~Iv~i~ 93 (211)
+-.++|++++ ++.-+..+-..+.+.+++-+++.+.+..+| .++|++
T Consensus 57 yLg~~R~~~t-ke~~d~~~yRr~c~ki~~pi~~~l~e~k~d~~kii~IGV~ 106 (164)
T COG5418 57 YLGWPRPPMT-KEVFDHPGYRRVCRKIADPIGRVLEEEKPDGIKIIFIGVK 106 (164)
T ss_pred hhCCCCCCcC-HHHhcchhHHHHHHHHHHHHHHHHHHhCcCCceEEEEecC
Confidence 3456777775 344433344455667777778888776555 556665
No 167
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=25.78 E-value=3.4e+02 Score=22.84 Aligned_cols=38 Identities=16% Similarity=-0.043 Sum_probs=23.5
Q ss_pred HHHHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEE
Q 028297 76 IFVDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP 113 (211)
Q Consensus 76 ~la~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~ 113 (211)
.+...+++.++|+|++....-...+...+...++|++.
T Consensus 80 ~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~ 117 (350)
T cd03785 80 QARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVI 117 (350)
T ss_pred HHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEE
Confidence 34455666689999985432223345556677888765
No 168
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=25.17 E-value=1.9e+02 Score=25.09 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=31.6
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCcc-chHHHHHHHhCCCeEEe
Q 028297 73 TVDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPL 114 (211)
Q Consensus 73 ~~~~la~~i~~~~~d~Iv~i~~gG~-~~A~~lA~~L~~p~~~~ 114 (211)
..+..++.+++.++|.||++-.|.. -.|..+|..+++|++.+
T Consensus 65 ~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~~~p~i~I 107 (337)
T cd08177 65 VTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRTGLPIIAI 107 (337)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhcCCEEEE
Confidence 4455556666678999999987665 47888888889998765
No 169
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=24.83 E-value=1.1e+02 Score=22.15 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=25.6
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCC-eEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGA-EVVEC 181 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga-~~V~v 181 (211)
.+++.++++. .+|.....++..|++.|. +.++.
T Consensus 70 ~~~~~ivv~C---~~G~rs~~aa~~L~~~G~~~~v~~ 103 (122)
T cd01526 70 DKDSPIYVVC---RRGNDSQTAVRKLKELGLERFVRD 103 (122)
T ss_pred CCCCcEEEEC---CCCCcHHHHHHHHHHcCCccceee
Confidence 4678888885 578888889999999999 55543
No 170
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=24.80 E-value=2.2e+02 Score=21.50 Aligned_cols=37 Identities=14% Similarity=0.043 Sum_probs=31.0
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEE
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 183 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~ 183 (211)
++..|+|-=|==.+-+++..+.+.++++|...+..++
T Consensus 98 ~~~~V~I~aD~~~~~~~vv~vmd~l~~aG~~~v~l~t 134 (141)
T PRK11267 98 KDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVG 134 (141)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence 4567888777778888999999999999999887755
No 171
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=24.63 E-value=1.1e+02 Score=27.97 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=25.3
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHhCCCe
Q 028297 145 IEPGERALVIDDLVATGGTLSAAVRLLERMGAE 177 (211)
Q Consensus 145 ~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~ 177 (211)
..+||+|++| .+|+|....+..|.+.|++
T Consensus 172 ~~~GKrV~VI----G~GaSA~di~~~l~~~ga~ 200 (443)
T COG2072 172 DLRGKRVLVI----GAGASAVDIAPELAEVGAS 200 (443)
T ss_pred ccCCCeEEEE----CCCccHHHHHHHHHhcCCe
Confidence 3599999975 7999999999999999943
No 172
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=24.56 E-value=60 Score=25.52 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=15.5
Q ss_pred CCccchHHHHHHHhCCCeEE
Q 028297 94 ARGFVFGPSIALAIGAKFVP 113 (211)
Q Consensus 94 ~gG~~~A~~lA~~L~~p~~~ 113 (211)
.||-.+|..||+.||.++..
T Consensus 10 sgg~~Ia~~LA~~Lg~~~~d 29 (179)
T PF13189_consen 10 SGGREIAERLAEKLGYPYYD 29 (179)
T ss_dssp SSHHHHHHHHHHHCT--EE-
T ss_pred CChHHHHHHHHHHcCCccCC
Confidence 58889999999999999865
No 173
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=24.34 E-value=1.2e+02 Score=23.52 Aligned_cols=30 Identities=27% Similarity=0.385 Sum_probs=23.2
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 180 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~ 180 (211)
.+||+|+| +.+|.|...++..|.+.| +.|.
T Consensus 165 ~~~k~V~V----VG~G~SA~d~a~~l~~~g-~~V~ 194 (203)
T PF13738_consen 165 FKGKRVVV----VGGGNSAVDIAYALAKAG-KSVT 194 (203)
T ss_dssp CTTSEEEE----E--SHHHHHHHHHHTTTC-SEEE
T ss_pred cCCCcEEE----EcChHHHHHHHHHHHhhC-CEEE
Confidence 58999996 589999999999999998 4443
No 174
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=24.14 E-value=1.9e+02 Score=20.69 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=24.8
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCeEEE
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVE 180 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~ 180 (211)
+++.++++. .+|.....++..|.+.|-+.+.
T Consensus 59 ~~~~IVlyC---~~G~rS~~aa~~L~~~G~~~v~ 89 (104)
T PRK10287 59 KNDTVKLYC---NAGRQSGQAKEILSEMGYTHAE 89 (104)
T ss_pred CCCeEEEEe---CCChHHHHHHHHHHHcCCCeEE
Confidence 456788875 4788888899999999988764
No 175
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=24.12 E-value=2e+02 Score=25.12 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCCcEEEEecCCcc-chHHHHHHHhCCCeEEe
Q 028297 74 VDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPL 114 (211)
Q Consensus 74 ~~~la~~i~~~~~d~Iv~i~~gG~-~~A~~lA~~L~~p~~~~ 114 (211)
.+...+.+++.++|.|+++-.|.. -.|..+|..+++|++.+
T Consensus 65 v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~~~p~i~V 106 (347)
T cd08172 65 IERLAAQAKENGADVIIGIGGGKVLDTAKAVADRLGVPVITV 106 (347)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhCCCEEEe
Confidence 334445566668899999987665 47888888889998765
No 176
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=24.05 E-value=2.9e+02 Score=20.05 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=46.6
Q ss_pred EEEEecCCc-cchHHHHHHHhCCCeEEeecCCCCCCceeeeeeeeecCceeEEEecCCcC---CCCEEEEEeccccchHH
Q 028297 88 VVAGIEARG-FVFGPSIALAIGAKFVPLRKPNKLPGEVISEAYVLEYGTDRLEMHVGAIE---PGERALVIDDLVATGGT 163 (211)
Q Consensus 88 ~Iv~i~~gG-~~~A~~lA~~L~~p~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~gk~VLIVDDiitTG~T 163 (211)
+++|++.-| -.++..+|+.++.++..+.-.........-..+....+...+. .+.+. +...++++|++=..-.+
T Consensus 3 lL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~--~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 3 LLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFK--DGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEE--E-CCCTTHHEEEEEEESSCGG--HH
T ss_pred EEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccc--cccccccccceeEEEECCcccCCHH
Confidence 567777655 3589999999998886654332211111111122112222222 23332 35689999999877777
Q ss_pred HHHHHHHHHhCC
Q 028297 164 LSAAVRLLERMG 175 (211)
Q Consensus 164 l~~a~~~L~~~G 175 (211)
+......+.+.+
T Consensus 81 v~~~L~~ll~~~ 92 (139)
T PF07728_consen 81 VLESLLSLLEER 92 (139)
T ss_dssp HHHTTHHHHSSS
T ss_pred HHHHHHHHHhhC
Confidence 777766666554
No 177
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=23.98 E-value=1.5e+02 Score=22.90 Aligned_cols=33 Identities=9% Similarity=-0.126 Sum_probs=25.2
Q ss_pred CCCCEEEEEeccccchH-HHHHHHHHHHhCCCeEEEE
Q 028297 146 EPGERALVIDDLVATGG-TLSAAVRLLERMGAEVVEC 181 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~-Tl~~a~~~L~~~Ga~~V~v 181 (211)
.+++.|++.+. +|. ....++..|+..|-+.|+.
T Consensus 114 ~~d~~IVvYC~---~G~~~S~~aa~~L~~~G~~~V~~ 147 (162)
T TIGR03865 114 DKDRPLVFYCL---ADCWMSWNAAKRALAYGYSNVYW 147 (162)
T ss_pred CCCCEEEEEEC---CCCHHHHHHHHHHHhcCCcceEE
Confidence 37889999987 464 4556888999999987653
No 178
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=23.74 E-value=2e+02 Score=25.05 Aligned_cols=41 Identities=27% Similarity=0.312 Sum_probs=31.0
Q ss_pred HHHHHHHHhhcCCcEEEEecCCcc-chHHHHHHHhCCCeEEe
Q 028297 74 VDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPL 114 (211)
Q Consensus 74 ~~~la~~i~~~~~d~Iv~i~~gG~-~~A~~lA~~L~~p~~~~ 114 (211)
.+..++.+++.++|.||++-.|.. -.|..+|..+++|++.+
T Consensus 66 v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~P~iaI 107 (351)
T cd08170 66 IERLAEIARDNGADVVIGIGGGKTLDTAKAVADYLGAPVVIV 107 (351)
T ss_pred HHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHHcCCCEEEe
Confidence 445555566678999999987775 47888888889998665
No 179
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=23.72 E-value=1e+02 Score=30.53 Aligned_cols=35 Identities=31% Similarity=0.522 Sum_probs=29.0
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEE
Q 028297 145 IEPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 182 (211)
Q Consensus 145 ~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~ 182 (211)
..+|.+|||||| +.-+..-+..+|++.|+++..+.
T Consensus 663 ~l~g~~iLlvdd---n~vn~~Va~~~l~~~g~~~~~~~ 697 (786)
T KOG0519|consen 663 LLTGPKILLVDD---NPVNRKVATGMLKKLGAEVTEVN 697 (786)
T ss_pred cccCCceEEEec---ccchHHHHHHHHHHhCCeeEeec
Confidence 458999999999 56677888899999999876544
No 180
>PRK01641 leuD isopropylmalate isomerase small subunit; Provisional
Probab=23.70 E-value=1.2e+02 Score=24.83 Aligned_cols=42 Identities=19% Similarity=0.200 Sum_probs=35.0
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEEEeCc
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECACVVGLP 188 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~~~~~ 188 (211)
++.+||+...=+.+|+|=..|+..|+.+|.+.|.+-...+.+
T Consensus 66 ~~~~IlVaG~NFGcGSSRE~A~~al~~~Gi~aVIA~SFa~IF 107 (200)
T PRK01641 66 QGASILLAGDNFGCGSSREHAPWALADYGFRAVIAPSFADIF 107 (200)
T ss_pred CCCeEEEcCCcccCCCcHHHHHHHHHHcCCCEEEechHHHHH
Confidence 677999999999999999999999999998866554444443
No 181
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=23.50 E-value=2.3e+02 Score=25.06 Aligned_cols=29 Identities=7% Similarity=0.029 Sum_probs=22.1
Q ss_pred cCCcEEEEecCCccch--HHHHHHHh--CCCeEE
Q 028297 84 MGISVVAGIEARGFVF--GPSIALAI--GAKFVP 113 (211)
Q Consensus 84 ~~~d~Iv~i~~gG~~~--A~~lA~~L--~~p~~~ 113 (211)
.++|+++.+|.-||++ |.. ++.. |+|.++
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~-~k~~~~~i~viy 107 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKK-IKKAYPKKEIIY 107 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHH-HHhcCCCCCEEE
Confidence 4799999999999985 443 4555 688765
No 182
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=23.24 E-value=1.9e+02 Score=24.32 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=26.3
Q ss_pred HhhcCCcEEEEecCCcc--chHHHHHHHhCCCeEEeecC
Q 028297 81 YRDMGISVVAGIEARGF--VFGPSIALAIGAKFVPLRKP 117 (211)
Q Consensus 81 i~~~~~d~Iv~i~~gG~--~~A~~lA~~L~~p~~~~~k~ 117 (211)
++++++|++|+=+.||- .---..|..||+|++.+++.
T Consensus 186 ~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP 224 (248)
T PRK08057 186 LRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARP 224 (248)
T ss_pred HHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCC
Confidence 45568899999888884 32234567789998887644
No 183
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=23.23 E-value=2e+02 Score=25.15 Aligned_cols=41 Identities=12% Similarity=0.048 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcCCcEEEEecCCcc-chHHHHHHHhCCCeEEe
Q 028297 74 VDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPL 114 (211)
Q Consensus 74 ~~~la~~i~~~~~d~Iv~i~~gG~-~~A~~lA~~L~~p~~~~ 114 (211)
.+..++.+++.++|.|+++-.|.. -.|..+|..+++|++.+
T Consensus 66 v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~~~~p~i~V 107 (349)
T cd08550 66 VVKALCGAEEQEADVIIGVGGGKTLDTAKAVADRLDKPIVIV 107 (349)
T ss_pred HHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCEEEe
Confidence 444555566668899999987665 47888888889998765
No 184
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=23.14 E-value=1.9e+02 Score=21.12 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=23.7
Q ss_pred cCCCCEEEEEeccccchHHHHHHHHHHHhCCCe
Q 028297 145 IEPGERALVIDDLVATGGTLSAAVRLLERMGAE 177 (211)
Q Consensus 145 ~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~ 177 (211)
+.++++|++.++ .+|..-..++..|+..|-+
T Consensus 83 i~~~~~vvvyC~--~~G~rs~~a~~~L~~~G~~ 113 (128)
T cd01520 83 LERDPKLLIYCA--RGGMRSQSLAWLLESLGID 113 (128)
T ss_pred cCCCCeEEEEeC--CCCccHHHHHHHHHHcCCc
Confidence 457889999997 4465666777899999984
No 185
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=22.61 E-value=67 Score=25.30 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=15.9
Q ss_pred EEEEEeccccchHHHHHHHHH
Q 028297 150 RALVIDDLVATGGTLSAAVRL 170 (211)
Q Consensus 150 ~VLIVDDiitTG~Tl~~a~~~ 170 (211)
.=+|+|=...||+|+.+|.++
T Consensus 192 gdiVlDpF~GSGTT~~aa~~l 212 (231)
T PF01555_consen 192 GDIVLDPFAGSGTTAVAAEEL 212 (231)
T ss_dssp T-EEEETT-TTTHHHHHHHHT
T ss_pred ceeeehhhhccChHHHHHHHc
Confidence 347899999999999977654
No 186
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=22.40 E-value=2.2e+02 Score=25.71 Aligned_cols=40 Identities=15% Similarity=0.051 Sum_probs=25.3
Q ss_pred HHHHHHHHhhcCCcEEEEecCCccch--HHHHHHHh-CCCeEE
Q 028297 74 VDIFVDRYRDMGISVVAGIEARGFVF--GPSIALAI-GAKFVP 113 (211)
Q Consensus 74 ~~~la~~i~~~~~d~Iv~i~~gG~~~--A~~lA~~L-~~p~~~ 113 (211)
.+.+++.+...++|++++++.-||++ +..+-+.. ++|.+.
T Consensus 74 ~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iih 116 (381)
T COG0763 74 RRELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIH 116 (381)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEE
Confidence 34444555566899999999999984 33333332 266544
No 187
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=22.40 E-value=2.1e+02 Score=24.81 Aligned_cols=41 Identities=22% Similarity=0.378 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCCcEEEEecCCcc-chHHHHHHHhCCCeEEe
Q 028297 74 VDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPL 114 (211)
Q Consensus 74 ~~~la~~i~~~~~d~Iv~i~~gG~-~~A~~lA~~L~~p~~~~ 114 (211)
++.+.+.+++.++|+|+++-.|.. -.|..+|...++|++.+
T Consensus 67 v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~~~~p~i~i 108 (339)
T cd08173 67 VEKVESSARDIGADFVIGVGGGRVIDVAKVAAYKLGIPFISV 108 (339)
T ss_pred HHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHhcCCCEEEe
Confidence 444445555567899999986665 47888888889998764
No 188
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=22.33 E-value=2e+02 Score=25.37 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCcEEEEecCCcc-chHHHHHHHhCCCeEEe
Q 028297 74 VDIFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPL 114 (211)
Q Consensus 74 ~~~la~~i~~~~~d~Iv~i~~gG~-~~A~~lA~~L~~p~~~~ 114 (211)
.+..++.+++.++|.|+++-.|.. -.|..+|..+++|++.+
T Consensus 73 v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~I 114 (366)
T PRK09423 73 IDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADYLGVPVVIV 114 (366)
T ss_pred HHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCCCEEEe
Confidence 445555566668899999987765 47888888889998665
No 189
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=22.25 E-value=1.1e+02 Score=26.15 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=26.1
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEE
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 182 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~ 182 (211)
.+++++| +.+|++.++++-.|.+.|++.+.++
T Consensus 121 ~~~~vli----lGaGGaarAi~~aL~~~g~~~i~i~ 152 (272)
T PRK12550 121 PDLVVAL----RGSGGMAKAVAAALRDAGFTDGTIV 152 (272)
T ss_pred CCCeEEE----ECCcHHHHHHHHHHHHCCCCEEEEE
Confidence 4567774 5799999999999999999876544
No 190
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=22.04 E-value=40 Score=27.67 Aligned_cols=19 Identities=37% Similarity=0.373 Sum_probs=14.4
Q ss_pred eccccchHHHHHHHHHHHhCCCeEEE
Q 028297 155 DDLVATGGTLSAAVRLLERMGAEVVE 180 (211)
Q Consensus 155 DDiitTG~Tl~~a~~~L~~~Ga~~V~ 180 (211)
=|++.||+||+ +.|-+.+.
T Consensus 149 vDiv~TG~TLr-------~NgL~~~e 167 (204)
T PRK13584 149 VDIVQTGTTLK-------ANGLVEKQ 167 (204)
T ss_pred EEEECccHHHH-------HCCCEEEE
Confidence 38999999986 67776654
No 191
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=22.02 E-value=2.5e+02 Score=24.13 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCcEEEEecCCcc-chHHHHHHHh--CCCeEEe
Q 028297 75 DIFVDRYRDMGISVVAGIEARGF-VFGPSIALAI--GAKFVPL 114 (211)
Q Consensus 75 ~~la~~i~~~~~d~Iv~i~~gG~-~~A~~lA~~L--~~p~~~~ 114 (211)
+..++.+++.++|.|+++-.|.. -.|..+|..+ ++|++.+
T Consensus 68 ~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~~~~p~i~i 110 (332)
T cd07766 68 KEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLNRGLPIIIV 110 (332)
T ss_pred HHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhcCCCCEEEE
Confidence 34444455567899999987665 4788888887 8898664
No 192
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=21.99 E-value=2.2e+02 Score=24.88 Aligned_cols=39 Identities=5% Similarity=-0.059 Sum_probs=29.4
Q ss_pred HHHHHHhhcCCcEEEEecCCcc-chHHHHHHHhCCCeEEe
Q 028297 76 IFVDRYRDMGISVVAGIEARGF-VFGPSIALAIGAKFVPL 114 (211)
Q Consensus 76 ~la~~i~~~~~d~Iv~i~~gG~-~~A~~lA~~L~~p~~~~ 114 (211)
...+..++.++|.||++-.|.. -.|..+|..+++|+..+
T Consensus 69 ~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~~~p~i~V 108 (345)
T cd08171 69 RLKKNPAVQEADMIFAVGGGKAIDTVKVLADKLGKPVFTF 108 (345)
T ss_pred HHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEe
Confidence 3344555668899999987765 47888888889998765
No 193
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=21.79 E-value=2.6e+02 Score=18.78 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=26.1
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 182 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~ 182 (211)
.++++++| +.+|..-..++..|.+.|...+.++
T Consensus 21 ~~~~~v~i----~G~G~~g~~~a~~l~~~~~~~v~v~ 53 (86)
T cd05191 21 LKGKTVVV----LGAGEVGKGIAKLLADEGGKKVVLC 53 (86)
T ss_pred CCCCEEEE----ECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 47888887 5679999999999999976666554
No 194
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=21.74 E-value=2.8e+02 Score=20.15 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=28.1
Q ss_pred CCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEEE
Q 028297 148 GERALVIDDLVATGGTLSAAVRLLERMGAEVVECACV 184 (211)
Q Consensus 148 gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~~ 184 (211)
...|.|-=|==++=+.+..+.+.++++|.+.+..+++
T Consensus 85 ~~~v~I~aD~~~~~~~vv~v~d~~~~aG~~~v~l~t~ 121 (122)
T TIGR02803 85 DTTIFFRADKTVDYGDLMKVMNLLRQAGYLKIGLVGL 121 (122)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 4456666666666678889999999999998877653
No 195
>PRK13947 shikimate kinase; Provisional
Probab=21.28 E-value=89 Score=23.76 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=21.2
Q ss_pred EEEEecC-CccchHHHHHHHhCCCeEEe
Q 028297 88 VVAGIEA-RGFVFGPSIALAIGAKFVPL 114 (211)
Q Consensus 88 ~Iv~i~~-gG~~~A~~lA~~L~~p~~~~ 114 (211)
+++|++. |+-.+|..+|+.||.|++..
T Consensus 5 ~l~G~~GsGKst~a~~La~~lg~~~id~ 32 (171)
T PRK13947 5 VLIGFMGTGKTTVGKRVATTLSFGFIDT 32 (171)
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5667664 55679999999999998763
No 196
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=21.27 E-value=2.1e+02 Score=24.39 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhcCCcEEEE----ecCCccchHHHHHHHhCCCeEE
Q 028297 72 DTVDIFVDRYRDMGISVVAG----IEARGFVFGPSIALAIGAKFVP 113 (211)
Q Consensus 72 ~~~~~la~~i~~~~~d~Iv~----i~~gG~~~A~~lA~~L~~p~~~ 113 (211)
.++..++..++..++|+|++ ++...-..+..+|..||.|.+.
T Consensus 98 ~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t 143 (260)
T COG2086 98 ATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVT 143 (260)
T ss_pred HHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceee
Confidence 55667777777778887774 3333345788999999999865
No 197
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.09 E-value=2.4e+02 Score=22.54 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=21.6
Q ss_pred CCcEEEEecCCc------c--chHHHHHHHhCCCeEE
Q 028297 85 GISVVAGIEARG------F--VFGPSIALAIGAKFVP 113 (211)
Q Consensus 85 ~~d~Iv~i~~gG------~--~~A~~lA~~L~~p~~~ 113 (211)
++|+|++=...- + ..|..+|+.+|+|+..
T Consensus 124 ~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfE 160 (219)
T KOG0081|consen 124 NPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFE 160 (219)
T ss_pred CCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeee
Confidence 689888754322 2 3788999999999865
No 198
>PTZ00428 60S ribosomal protein L4; Provisional
Probab=21.03 E-value=1.9e+02 Score=26.09 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=19.7
Q ss_pred EEEeccccchHHHHHHHHHHHhCCC
Q 028297 152 LVIDDLVATGGTLSAAVRLLERMGA 176 (211)
Q Consensus 152 LIVDDiitTG~Tl~~a~~~L~~~Ga 176 (211)
|+|||.+.+-.--..++++|+..|+
T Consensus 151 lVV~d~~e~~~KTK~av~~Lk~lg~ 175 (381)
T PTZ00428 151 LVVSDSVESYEKTKEAVAFLKALGA 175 (381)
T ss_pred EEEEcCcCCCCCHHHHHHHHHHcCC
Confidence 7788877774455789999999997
No 199
>PF03192 DUF257: Pyrococcus protein of unknown function, DUF257; InterPro: IPR005489 This family of proteins is of unknown function.; PDB: 2EKD_C.
Probab=21.03 E-value=59 Score=26.70 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=15.7
Q ss_pred EEEEEeccccchHHHHHHHHH
Q 028297 150 RALVIDDLVATGGTLSAAVRL 170 (211)
Q Consensus 150 ~VLIVDDiitTG~Tl~~a~~~ 170 (211)
.=++|||+++|+.....-.+.
T Consensus 40 ~~vlI~DilDtl~i~~~~l~~ 60 (210)
T PF03192_consen 40 YPVLIDDILDTLHIYKKHLEL 60 (210)
T ss_dssp S-BEEEEETTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHH
Confidence 567899999999998854443
No 200
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=20.91 E-value=2.8e+02 Score=24.21 Aligned_cols=34 Identities=9% Similarity=-0.000 Sum_probs=23.6
Q ss_pred HHHHhhcCCcEEEEecCCccchHHHHHHHhCCCeEE
Q 028297 78 VDRYRDMGISVVAGIEARGFVFGPSIALAIGAKFVP 113 (211)
Q Consensus 78 a~~i~~~~~d~Iv~i~~gG~~~A~~lA~~L~~p~~~ 113 (211)
...+.+.++|+|+.-. ....|..+|+.+|+|++.
T Consensus 85 ~~~~~~~~pDlVi~d~--~~~~~~~~A~~~giP~v~ 118 (392)
T TIGR01426 85 EEAYKGDRPDLIVYDI--ASWTGRLLARKWDVPVIS 118 (392)
T ss_pred HHHhcCCCCCEEEECC--ccHHHHHHHHHhCCCEEE
Confidence 3334445789997744 234678889999999864
No 201
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=20.84 E-value=1.2e+02 Score=26.18 Aligned_cols=33 Identities=27% Similarity=0.480 Sum_probs=27.9
Q ss_pred CCCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEE
Q 028297 146 EPGERALVIDDLVATGGTLSAAVRLLERMGAEVVECA 182 (211)
Q Consensus 146 ~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~ 182 (211)
.+|++++|+ ..|++.++++-.|.++|++.+.++
T Consensus 124 ~~~~~vlil----GAGGAarAv~~aL~~~g~~~i~V~ 156 (283)
T COG0169 124 VTGKRVLIL----GAGGAARAVAFALAEAGAKRITVV 156 (283)
T ss_pred cCCCEEEEE----CCcHHHHHHHHHHHHcCCCEEEEE
Confidence 468999974 799999999999999999776443
No 202
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=20.79 E-value=1e+02 Score=23.73 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=20.4
Q ss_pred ccccchHHHHHHHHHHHhCCCeEEE
Q 028297 156 DLVATGGTLSAAVRLLERMGAEVVE 180 (211)
Q Consensus 156 DiitTG~Tl~~a~~~L~~~Ga~~V~ 180 (211)
|...+..-+..|.+.|+.+|++.+.
T Consensus 100 Dl~~~~~~i~~a~~~L~~aG~~~if 124 (143)
T PF10662_consen 100 DLPSDDANIERAKKWLKNAGVKEIF 124 (143)
T ss_pred cCccchhhHHHHHHHHHHcCCCCeE
Confidence 4445678899999999999999873
No 203
>PF00694 Aconitase_C: Aconitase C-terminal domain CAUTION: The Prosite patterns do not match this domain.; InterPro: IPR000573 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family []. Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively [, ]. LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis []. Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus []. This entry represents the 'swivel' domain found at the C-terminal of eukaryotic mAcn, cAcn/IPR1 and IRP2, and bacterial AcnA. This domain has a three layer beta/beta/alpha structure, and in cytosolic Acn is known to rotate between the cAcn and IRP1 forms of the enzyme. This domain is also found in the small subunit of isopropylmalate dehydratase (LeuD). More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0008152 metabolic process; PDB: 2PKP_A 2B3Y_A 2B3X_A 1V7L_B 1C97_A 1NIT_A 8ACN_A 1C96_A 1ACO_A 1NIS_A ....
Probab=20.73 E-value=1.6e+02 Score=22.30 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=28.7
Q ss_pred CCCEEEEEe-ccccchHHHHHHHHHHHhCCCeEEEEEE
Q 028297 147 PGERALVID-DLVATGGTLSAAVRLLERMGAEVVECAC 183 (211)
Q Consensus 147 ~gk~VLIVD-DiitTG~Tl~~a~~~L~~~Ga~~V~v~~ 183 (211)
++..+||+= .=+.+|++-..|+..|+..|.+.|.+-.
T Consensus 72 ~~~~ilv~~g~nfG~GSSRE~A~~al~~~Gi~aVIA~S 109 (131)
T PF00694_consen 72 EGGDILVVGGENFGCGSSREHAAWALKDLGIRAVIAES 109 (131)
T ss_dssp TTTEEEEEE-SSBTBSS--THHHHHHHHTTEEEEEESS
T ss_pred cCCCEEEECCCcccCCcchHHHHHHHHHhCCeEEEech
Confidence 467888885 9999999999999999999977654433
No 204
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=20.45 E-value=91 Score=26.31 Aligned_cols=38 Identities=16% Similarity=0.425 Sum_probs=25.0
Q ss_pred HHHHHhhcCCcEEEEecCCccc-hHHHHHHHhCCCeEEe
Q 028297 77 FVDRYRDMGISVVAGIEARGFV-FGPSIALAIGAKFVPL 114 (211)
Q Consensus 77 la~~i~~~~~d~Iv~i~~gG~~-~A~~lA~~L~~p~~~~ 114 (211)
+...++..+.|+|+++-.|-++ +++..|..+++||..+
T Consensus 67 ~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~~~p~isV 105 (250)
T PF13685_consen 67 LVEALRPKDADLIIGVGGGTIIDIAKYAAFELGIPFISV 105 (250)
T ss_dssp HHTTS--TT--EEEEEESHHHHHHHHHHHHHHT--EEEE
T ss_pred HHHHhcccCCCEEEEeCCcHHHHHHHHHHHhcCCCEEEe
Confidence 3344444578999999877764 8999999999999875
No 205
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=20.34 E-value=4.4e+02 Score=20.84 Aligned_cols=33 Identities=24% Similarity=0.521 Sum_probs=19.9
Q ss_pred CCCEEEEEeccccch-HHHHHHHHHHHhCCCeEE
Q 028297 147 PGERALVIDDLVATG-GTLSAAVRLLERMGAEVV 179 (211)
Q Consensus 147 ~gk~VLIVDDiitTG-~Tl~~a~~~L~~~Ga~~V 179 (211)
..+++||||+.---+ ..+....+.+...|++.+
T Consensus 92 ~~~~vliVDEasmv~~~~~~~ll~~~~~~~~kli 125 (196)
T PF13604_consen 92 PKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLI 125 (196)
T ss_dssp TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEE
T ss_pred CcccEEEEecccccCHHHHHHHHHHHHhcCCEEE
Confidence 556899999986665 445566666666677543
No 206
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=20.29 E-value=48 Score=27.37 Aligned_cols=18 Identities=50% Similarity=0.602 Sum_probs=14.1
Q ss_pred ccccchHHHHHHHHHHHhCCCeEEE
Q 028297 156 DLVATGGTLSAAVRLLERMGAEVVE 180 (211)
Q Consensus 156 DiitTG~Tl~~a~~~L~~~Ga~~V~ 180 (211)
|++.||+||+ +.|-+.+.
T Consensus 160 DivsTG~TLr-------~NgL~~ie 177 (215)
T PRK01686 160 DIVETGNTLR-------ANGLVEVE 177 (215)
T ss_pred EeecChHHHH-------HCcCEEee
Confidence 8999999986 67776654
No 207
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=20.21 E-value=5.7e+02 Score=22.40 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=30.9
Q ss_pred eEEEecC-CcCCCCEEEEEeccccchHHHHHHHHHHHhCCC--eEEEEEEE
Q 028297 137 RLEMHVG-AIEPGERALVIDDLVATGGTLSAAVRLLERMGA--EVVECACV 184 (211)
Q Consensus 137 ~~~~~~~-~~~~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga--~~V~v~~~ 184 (211)
.|++.+. .+..|..+.||-.-+.+...+. |++.|++.|. .++.+.++
T Consensus 180 ~F~iGka~vLrdG~D~tiiA~G~mv~~al~-AA~~L~~~GIsa~Vi~m~tI 229 (312)
T COG3958 180 TFEIGKANVLRDGSDLTIIATGVMVAEALE-AAEILKKEGISAAVINMFTI 229 (312)
T ss_pred eEeccceeEeecCCceEEEecCcchHHHHH-HHHHHHhcCCCEEEEecCcc
Confidence 4554332 2357999999888888877765 6677888884 44544444
No 208
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=20.13 E-value=3.4e+02 Score=19.73 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=28.7
Q ss_pred CCCEEEEEeccccchHHHHHHHHHHHhCCCeEEEEEE
Q 028297 147 PGERALVIDDLVATGGTLSAAVRLLERMGAEVVECAC 183 (211)
Q Consensus 147 ~gk~VLIVDDiitTG~Tl~~a~~~L~~~Ga~~V~v~~ 183 (211)
++..|+|-=|==++=+++..+.+.++++|.+.++.++
T Consensus 83 ~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~t 119 (121)
T TIGR02804 83 KDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQIVS 119 (121)
T ss_pred CCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEEe
Confidence 3456767666666777889999999999999887653
Done!