BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028299
         (211 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E2Z|A Chain A, Solution Nmr Structure Of Yeast Tim15, Co-Chaperone Of
           Mitochondrial Hsp70
          Length = 100

 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSF 182
           +M +AFTC  C  R++  ++  AY  GTV + C  C V H + D+L +FH+    V    
Sbjct: 9   KMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLM 68

Query: 183 --NYRDAKWDVG 192
             N      DVG
Sbjct: 69  KANGEQVSQDVG 80


>pdb|1UAP|A Chain A, Nmr Structure Of The Ntr Domain From Human Pcolce1
          Length = 154

 Score = 26.9 bits (58), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 48 LQSNSKETSIVPLFGNQTLSKDEAMGLVLSAASVRGWTTGSGMEGPSVPAGA 99
          LQSN   +S+V     +++ ++   GL ++ + +  + TG G++ PS P GA
Sbjct: 40 LQSNFCASSLVVTATVKSMVREPGEGLAVTVSLIGAYKTG-GLDLPSPPTGA 90


>pdb|4DIM|A Chain A, Crystal Structure Of Phosphoribosylglycinamide Synthetase
           From Anaerococcus Prevotii
          Length = 403

 Score = 26.9 bits (58), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 17  PLTIFSIKSKNSPARLVRFPAPSKKNGNDSD-LQSNSKETSIVPL 60
           PL  +S KSK + A L R    ++K+G   + L SN+K+  IV +
Sbjct: 310 PLVFWSQKSKENKAGLARXIIETEKSGILKEILNSNAKDDDIVEI 354


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,568,091
Number of Sequences: 62578
Number of extensions: 211254
Number of successful extensions: 478
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 4
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)