BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028299
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9D113|DNLZ_MOUSE DNL-type zinc finger protein OS=Mus musculus GN=Dnlz PE=2 SV=1
Length = 177
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 77 SAASVRGWTTG--SGMEGPSVPAGAEEGSSTEKVSTFPWSLFTKSPRRRMRVAFTCNVCG 134
+A +RGW G SG S G+ ++ +V + L +TC VCG
Sbjct: 35 TAERLRGWAWGWASGWRSSSSAPGSGRAAALGRVEADHYQLV-----------YTCKVCG 83
Query: 135 QRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVN 179
R+++ I+ AY G V V C GC H + DNL+ F ++K N
Sbjct: 84 TRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLSWFSDLKGKRN 128
>sp|P42844|ZIM17_YEAST Mitochondrial protein import protein ZIM17 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ZIM17 PE=1
SV=2
Length = 174
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSF 182
+M +AFTC C R++ ++ AY GTV + C C V H + D+L +FH+ V
Sbjct: 68 KMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLM 127
Query: 183 --NYRDAKWDVG 192
N DVG
Sbjct: 128 KANGEQVSQDVG 139
>sp|A6ZSH0|ZIM17_YEAS7 Mitochondrial protein import protein ZIM17 OS=Saccharomyces
cerevisiae (strain YJM789) GN=ZIM17 PE=3 SV=2
Length = 174
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSF 182
+M +AFTC C R++ ++ AY GTV + C C V H + D+L +FH+ V
Sbjct: 68 KMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLM 127
Query: 183 --NYRDAKWDVG 192
N DVG
Sbjct: 128 KANGEQVSQDVG 139
>sp|B5VQB0|ZIM17_YEAS6 Mitochondrial protein import protein ZIM17 OS=Saccharomyces
cerevisiae (strain AWRI1631) GN=ZIM17 PE=3 SV=2
Length = 174
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSF 182
+M +AFTC C R++ ++ AY GTV + C C V H + D+L +FH+ V
Sbjct: 68 KMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLM 127
Query: 183 --NYRDAKWDVG 192
N DVG
Sbjct: 128 KANGEQVSQDVG 139
>sp|B3LPE4|ZIM17_YEAS1 Mitochondrial protein import protein ZIM17 OS=Saccharomyces
cerevisiae (strain RM11-1a) GN=ZIM17 PE=3 SV=2
Length = 174
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSF 182
+M +AFTC C R++ ++ AY GTV + C C V H + D+L +FH+ V
Sbjct: 68 KMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLM 127
Query: 183 --NYRDAKWDVG 192
N DVG
Sbjct: 128 KANGEQVSQDVG 139
>sp|Q0IH40|DNLZ_XENLA DNL-type zinc finger protein OS=Xenopus laevis GN=dnlz PE=2 SV=1
Length = 188
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 119 SPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMK 175
+P R+ +TC VC R+++ I+ AY G V V+C GC H + DNL F +++
Sbjct: 77 APSSHYRLIYTCKVCATRSSKTISKVAYHKGVVIVRCPGCENHHIIADNLGWFSDLE 133
>sp|Q5SXM8|DNLZ_HUMAN DNL-type zinc finger protein OS=Homo sapiens GN=DNLZ PE=2 SV=1
Length = 178
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 125 RVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEM 174
++ +TC VCG R+++ I+ AY G V V C GC H + DNL F ++
Sbjct: 70 QLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDL 119
>sp|Q09759|YA72_SCHPO Uncharacterized protein C24H6.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC24H6.02c PE=4 SV=1
Length = 175
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 30/55 (54%)
Query: 119 SPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHE 173
P+ V+FTC VC R+ + AY +GTV VQC C H + D+L +F E
Sbjct: 71 QPKPTYNVSFTCTVCNTRSNHNFSKQAYHNGTVLVQCPKCKNRHLMADHLKIFSE 125
>sp|A1L1P7|DNLZ_DANRE DNL-type zinc finger protein OS=Danio rerio GN=dnlz PE=2 SV=1
Length = 183
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 126 VAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMK 175
+ +TC VC R+ + I+ AY G V V C GC H + DNL F +++
Sbjct: 83 LVYTCKVCSTRSMKKISKLAYHKGVVIVTCPGCKNHHVIADNLKWFSDLE 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,621,870
Number of Sequences: 539616
Number of extensions: 3289460
Number of successful extensions: 9484
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 9400
Number of HSP's gapped (non-prelim): 92
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)