Query 028299
Match_columns 211
No_of_seqs 115 out of 207
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 15:18:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e2z_A TIM15; protein import, 100.0 2.5E-38 8.4E-43 245.4 3.8 75 118-192 4-78 (100)
2 2jr7_A DPH3 homolog; DESR1, CS 93.6 0.023 7.9E-07 43.0 1.4 37 125-164 21-57 (89)
3 1yop_A KTI11P; zinc finger, me 93.0 0.038 1.3E-06 41.2 1.7 37 125-164 21-57 (83)
4 1wge_A Hypothetical protein 26 92.5 0.051 1.7E-06 40.5 1.9 50 111-164 15-64 (83)
5 2l6l_A DNAJ homolog subfamily 90.5 0.12 4.2E-06 40.0 2.2 36 125-164 110-145 (155)
6 1qyp_A RNA polymerase II; tran 79.9 1.6 5.5E-05 29.1 3.3 35 127-161 15-52 (57)
7 1ltl_A DNA replication initiat 78.5 1.7 5.8E-05 36.7 3.7 36 124-162 131-166 (279)
8 3po3_S Transcription elongatio 76.5 0.82 2.8E-05 37.3 1.2 36 127-162 137-175 (178)
9 1pqv_S STP-alpha, transcriptio 76.2 1.2 4E-05 38.9 2.2 37 126-162 267-306 (309)
10 3h0g_I DNA-directed RNA polyme 72.5 1.5 5.1E-05 33.2 1.7 34 128-161 73-109 (113)
11 1k81_A EIF-2-beta, probable tr 70.8 1.7 5.7E-05 27.5 1.3 32 129-164 2-33 (36)
12 1tfi_A Transcriptional elongat 68.4 2.1 7.1E-05 28.7 1.5 34 128-161 10-46 (50)
13 1wee_A PHD finger family prote 66.7 2.8 9.7E-05 28.9 2.0 24 128-161 17-40 (72)
14 1gh9_A 8.3 kDa protein (gene M 63.4 4.3 0.00015 29.2 2.4 40 124-173 1-40 (71)
15 1twf_L ABC10-alpha, DNA-direct 63.1 2 6.9E-05 30.8 0.6 33 124-164 25-57 (70)
16 1vd4_A Transcription initiatio 58.6 4.1 0.00014 25.8 1.5 44 127-170 14-57 (62)
17 1wii_A Hypothetical UPF0222 pr 55.4 3.9 0.00013 30.3 1.1 39 123-164 19-59 (85)
18 2vl6_A SSO MCM N-TER, minichro 55.3 4.8 0.00016 33.5 1.7 38 124-161 138-177 (268)
19 3cc2_Z 50S ribosomal protein L 53.0 5 0.00017 31.7 1.4 32 123-161 56-87 (116)
20 1twf_I B12.6, DNA-directed RNA 51.7 7.3 0.00025 29.7 2.1 35 127-161 72-109 (122)
21 2k16_A Transcription initiatio 51.1 8.7 0.0003 26.3 2.2 26 128-163 19-45 (75)
22 3qt1_I DNA-directed RNA polyme 49.2 3.6 0.00012 32.4 0.0 35 127-161 92-129 (133)
23 2ri7_A Nucleosome-remodeling f 46.5 7.4 0.00025 30.1 1.4 25 129-163 10-35 (174)
24 1tfi_A Transcriptional elongat 45.2 14 0.00046 24.6 2.4 20 117-136 27-46 (50)
25 3lqh_A Histone-lysine N-methyl 45.1 8.4 0.00029 31.6 1.6 24 129-161 4-30 (183)
26 1we9_A PHD finger family prote 45.1 9 0.00031 25.5 1.5 26 129-163 8-34 (64)
27 1vq8_Z 50S ribosomal protein L 44.3 11 0.00037 27.7 1.9 31 124-161 24-54 (83)
28 1nee_A EIF-2-beta, probable tr 44.1 6.7 0.00023 31.2 0.8 32 129-164 104-135 (138)
29 2d74_B Translation initiation 42.8 6.8 0.00023 31.6 0.7 34 128-165 105-138 (148)
30 2kgg_A Histone demethylase jar 42.8 10 0.00035 24.7 1.4 20 144-163 10-31 (52)
31 2kvh_A Zinc finger and BTB dom 41.4 10 0.00035 19.1 1.1 10 128-137 4-13 (27)
32 1ffk_W Ribosomal protein L37AE 41.1 12 0.00041 27.2 1.7 32 123-161 23-54 (73)
33 1m2k_A Silent information regu 40.5 18 0.0006 30.1 2.9 42 127-174 121-162 (249)
34 1rik_A E6APC1 peptide; E6-bind 38.7 12 0.00041 18.8 1.1 10 128-137 3-12 (29)
35 2kvf_A Zinc finger and BTB dom 38.1 13 0.00043 18.8 1.1 10 128-137 4-13 (28)
36 1zso_A Hypothetical protein; s 37.2 13 0.00045 30.3 1.6 20 121-140 64-83 (164)
37 1yc5_A NAD-dependent deacetyla 37.0 9.5 0.00032 31.6 0.7 45 127-174 121-165 (246)
38 2e9h_A EIF-5, eukaryotic trans 36.1 20 0.00069 29.2 2.5 40 129-170 105-144 (157)
39 2lvu_A Zinc finger and BTB dom 42.2 7.7 0.00026 19.5 0.0 11 127-137 2-12 (26)
40 1ma3_A SIR2-AF2, transcription 35.8 17 0.00059 30.2 2.1 46 127-174 123-168 (253)
41 3glr_A NAD-dependent deacetyla 35.7 17 0.00057 31.6 2.1 45 127-174 139-183 (285)
42 4a17_Y RPL37A, 60S ribosomal p 35.7 13 0.00046 28.8 1.4 30 124-160 33-62 (103)
43 2kvg_A Zinc finger and BTB dom 35.3 12 0.00041 19.1 0.7 10 128-137 4-13 (27)
44 1znf_A 31ST zinc finger from X 34.2 10 0.00035 18.9 0.3 10 128-137 2-11 (27)
45 2elx_A Zinc finger protein 406 33.9 16 0.00054 19.3 1.1 10 128-137 8-17 (35)
46 2gmg_A Hypothetical protein PF 33.9 11 0.00037 29.3 0.5 31 124-162 64-94 (105)
47 1srk_A Zinc finger protein ZFP 33.1 17 0.00056 19.4 1.1 11 128-138 8-18 (35)
48 3cw2_K Translation initiation 32.5 7.1 0.00024 31.1 -0.7 32 129-164 105-136 (139)
49 4e2x_A TCAB9; kijanose, tetron 32.4 20 0.00069 30.3 2.1 39 124-163 9-64 (416)
50 3iz5_m 60S ribosomal protein L 32.4 14 0.00048 28.0 1.0 29 125-160 34-62 (92)
51 2k2d_A Ring finger and CHY zin 32.3 17 0.00057 26.3 1.3 34 123-163 33-66 (79)
52 3j21_i 50S ribosomal protein L 31.8 14 0.00046 27.6 0.8 31 124-161 32-62 (83)
53 1wjv_A Cell growth regulating 31.6 10 0.00035 28.2 0.1 41 122-162 5-47 (79)
54 3pur_A Lysine-specific demethy 31.1 24 0.00081 33.7 2.5 22 140-161 46-67 (528)
55 3flo_B DNA polymerase alpha ca 30.8 26 0.00087 29.4 2.4 37 124-160 19-57 (206)
56 2k3r_A Ribonuclease P protein 30.8 31 0.001 26.5 2.6 37 129-165 62-102 (123)
57 2m0f_A Zinc finger and BTB dom 30.7 19 0.00063 17.9 1.0 9 128-136 3-11 (29)
58 3jyw_9 60S ribosomal protein L 30.5 13 0.00043 27.1 0.4 30 124-160 23-52 (72)
59 1x0t_A Ribonuclease P protein 30.3 35 0.0012 26.0 2.9 36 129-164 67-106 (120)
60 2elq_A Zinc finger protein 406 30.2 19 0.00065 19.3 1.1 11 128-138 10-20 (36)
61 2eod_A TNF receptor-associated 30.0 13 0.00046 23.2 0.4 39 127-165 10-50 (66)
62 2m0d_A Zinc finger and BTB dom 30.0 20 0.00068 17.8 1.1 9 128-136 4-12 (30)
63 3j20_W 30S ribosomal protein S 29.9 29 0.00098 24.8 2.2 14 151-164 14-27 (63)
64 1ard_A Yeast transcription fac 29.7 13 0.00044 18.6 0.3 10 128-137 3-12 (29)
65 2els_A Zinc finger protein 406 29.6 20 0.00068 19.3 1.1 11 127-137 9-19 (36)
66 2elv_A Zinc finger protein 406 29.5 21 0.0007 19.2 1.1 11 127-137 9-19 (36)
67 3izc_m 60S ribosomal protein R 28.9 17 0.00057 27.6 0.9 30 124-160 33-62 (92)
68 2kdx_A HYPA, hydrogenase/ureas 28.3 14 0.00048 27.5 0.3 31 123-162 69-100 (119)
69 2elt_A Zinc finger protein 406 28.0 22 0.00076 18.9 1.1 11 127-137 9-19 (36)
70 2elp_A Zinc finger protein 406 27.9 22 0.00076 19.2 1.1 11 127-137 9-19 (37)
71 3axs_A Probable N(2),N(2)-dime 27.8 30 0.001 30.9 2.4 38 123-166 240-277 (392)
72 2xzm_6 RPS27E; ribosome, trans 27.6 31 0.001 25.8 2.1 16 151-166 31-46 (81)
73 1njq_A Superman protein; zinc- 27.2 23 0.00078 19.5 1.1 9 128-136 7-15 (39)
74 2elm_A Zinc finger protein 406 27.2 23 0.00079 19.4 1.1 12 127-138 9-20 (37)
75 2qkd_A Zinc finger protein ZPR 27.1 34 0.0012 31.4 2.7 21 122-142 244-264 (404)
76 2epv_A Zinc finger protein 268 27.0 24 0.00081 20.1 1.1 11 127-137 12-22 (44)
77 1qxf_A GR2, 30S ribosomal prot 27.0 34 0.0012 24.7 2.1 17 151-167 6-22 (66)
78 1klr_A Zinc finger Y-chromosom 27.0 14 0.00049 18.4 0.1 10 128-137 3-12 (30)
79 2lcq_A Putative toxin VAPC6; P 26.2 14 0.00049 28.4 0.0 32 121-161 126-157 (165)
80 1wep_A PHF8; structural genomi 26.2 32 0.0011 23.8 1.9 18 146-163 21-39 (79)
81 3a43_A HYPD, hydrogenase nicke 26.2 20 0.0007 27.8 0.9 40 124-163 67-118 (139)
82 2xb1_A Pygopus homolog 2, B-ce 26.0 27 0.00093 25.9 1.6 25 128-161 4-29 (105)
83 2elo_A Zinc finger protein 406 25.9 16 0.00053 19.8 0.1 10 128-137 10-19 (37)
84 1q14_A HST2 protein; histone d 25.8 25 0.00084 31.4 1.5 47 126-174 143-191 (361)
85 2jox_A Churchill protein; zinc 25.6 40 0.0014 26.4 2.5 48 120-169 18-72 (106)
86 2lvt_A Zinc finger and BTB dom 31.4 15 0.0005 18.6 0.0 9 128-136 3-11 (29)
87 2g2k_A EIF-5, eukaryotic trans 25.3 29 0.00098 28.7 1.7 40 129-170 98-137 (170)
88 3dzy_D Peroxisome proliferator 25.1 9.2 0.00031 34.1 -1.4 27 128-162 51-77 (419)
89 2kwq_A Protein MCM10 homolog; 24.7 45 0.0016 25.1 2.6 45 123-168 11-63 (92)
90 3dzy_A Retinoic acid receptor 24.7 8.8 0.0003 34.9 -1.6 27 128-162 138-164 (467)
91 1q1a_A HST2 protein; ternary c 24.6 21 0.00073 30.3 0.8 45 127-174 136-183 (289)
92 4b6d_A RAC GTPase-activating p 24.4 37 0.0013 23.1 1.9 24 128-160 20-43 (61)
93 2m0e_A Zinc finger and BTB dom 24.3 17 0.00059 17.9 0.1 9 128-136 3-11 (29)
94 3u5c_b RP61, YS20, 40S ribosom 24.1 43 0.0015 25.0 2.3 17 151-167 33-49 (82)
95 3p2a_A Thioredoxin 2, putative 24.1 45 0.0015 23.6 2.4 12 126-137 4-15 (148)
96 1paa_A Yeast transcription fac 23.9 17 0.00057 18.4 0.0 9 128-136 3-11 (30)
97 3iuf_A Zinc finger protein UBI 23.7 28 0.00096 20.6 1.1 10 128-137 8-17 (48)
98 1p7a_A BF3, BKLF, kruppel-like 23.3 19 0.00065 19.4 0.2 10 128-137 12-21 (37)
99 2lvr_A Zinc finger and BTB dom 29.0 17 0.00059 18.2 0.0 10 127-136 3-12 (30)
100 2en2_A B-cell lymphoma 6 prote 23.2 30 0.001 19.2 1.1 10 128-137 12-21 (42)
101 2kfq_A FP1; protein, de novo p 23.0 15 0.00053 19.6 -0.2 9 128-136 3-11 (32)
102 2elr_A Zinc finger protein 406 22.8 20 0.0007 19.0 0.3 10 128-137 10-19 (36)
103 2vpb_A Hpygo1, pygopus homolog 22.6 39 0.0013 23.2 1.7 26 127-161 8-34 (65)
104 1x5w_A Zinc finger protein 64, 22.6 13 0.00043 23.3 -0.8 40 128-167 10-52 (70)
105 2eoy_A Zinc finger protein 473 22.5 32 0.0011 19.6 1.1 10 128-137 13-22 (46)
106 2ytp_A Zinc finger protein 484 22.5 32 0.0011 19.6 1.1 11 128-138 13-23 (46)
107 2emj_A Zinc finger protein 28 22.4 32 0.0011 19.6 1.1 10 128-137 13-22 (46)
108 3r8s_0 50S ribosomal protein L 22.4 37 0.0013 23.1 1.5 21 150-171 25-48 (56)
109 2emi_A Zinc finger protein 484 22.1 33 0.0011 19.4 1.1 10 128-137 13-22 (46)
110 1vk6_A NADH pyrophosphatase; 1 22.0 31 0.0011 29.0 1.3 17 127-143 125-141 (269)
111 3iz6_X 40S ribosomal protein S 22.0 45 0.0015 25.1 2.0 19 150-168 34-52 (86)
112 3w0f_A Endonuclease 8-like 3; 22.0 48 0.0016 29.1 2.5 30 129-162 253-283 (287)
113 2yts_A Zinc finger protein 484 21.9 34 0.0012 19.3 1.1 10 128-137 13-22 (46)
114 3j21_g 50S ribosomal protein L 21.8 20 0.00067 24.5 0.0 30 123-163 10-39 (51)
115 2em2_A Zinc finger protein 28 21.7 34 0.0012 19.5 1.1 11 128-138 13-23 (46)
116 1lko_A Rubrerythrin all-iron(I 21.6 49 0.0017 26.5 2.4 28 125-161 153-180 (191)
117 2yrj_A Zinc finger protein 473 21.6 34 0.0012 19.3 1.1 11 128-138 13-23 (46)
118 2el5_A Zinc finger protein 268 21.4 35 0.0012 18.9 1.1 10 128-137 11-20 (42)
119 2em4_A Zinc finger protein 28 21.4 35 0.0012 19.4 1.1 10 128-137 13-22 (46)
120 3u31_A SIR2A, transcriptional 21.3 58 0.002 28.1 2.9 44 127-174 154-201 (290)
121 2yu5_A Zinc finger protein 473 21.3 35 0.0012 19.2 1.1 11 128-138 13-23 (44)
122 3h0g_L DNA-directed RNA polyme 21.1 18 0.00061 25.6 -0.3 32 125-164 19-50 (63)
123 2ytf_A Zinc finger protein 268 21.1 36 0.0012 19.2 1.1 10 128-137 13-22 (46)
124 1rim_A E6APC2 peptide; E6-bind 21.0 22 0.00076 19.2 0.2 10 128-137 3-12 (33)
125 2ept_A Zinc finger protein 32; 20.9 37 0.0013 18.7 1.1 11 127-137 10-20 (41)
126 2epc_A Zinc finger protein 32; 20.8 37 0.0013 18.7 1.1 10 128-137 12-21 (42)
127 2yto_A Zinc finger protein 484 20.7 37 0.0013 19.3 1.1 10 128-137 13-22 (46)
128 2eof_A Zinc finger protein 268 20.6 36 0.0012 18.9 1.1 10 128-137 13-22 (44)
129 2en3_A ZFP-95, zinc finger pro 20.5 37 0.0013 19.2 1.1 10 128-137 13-22 (46)
130 2lv2_A Insulinoma-associated p 20.4 15 0.00051 25.7 -0.8 41 128-168 29-72 (85)
131 2eor_A Zinc finger protein 224 20.3 37 0.0013 19.2 1.1 10 128-137 13-22 (46)
132 2ep3_A Zinc finger protein 484 20.3 38 0.0013 19.2 1.1 11 128-138 13-23 (46)
133 3kqi_A GRC5, PHD finger protei 20.2 48 0.0016 22.8 1.8 17 145-161 18-34 (75)
134 2eoz_A Zinc finger protein 473 20.2 31 0.0011 19.6 0.7 10 128-137 13-22 (46)
135 3i2d_A E3 SUMO-protein ligase 20.2 31 0.001 31.6 1.0 41 152-192 288-334 (371)
136 1yui_A GAGA-factor; complex (D 20.1 37 0.0013 20.3 1.1 10 127-136 24-33 (54)
137 2eow_A Zinc finger protein 347 20.0 38 0.0013 19.1 1.1 10 128-137 13-22 (46)
138 2emb_A Zinc finger protein 473 20.0 38 0.0013 19.0 1.1 11 128-138 13-23 (44)
No 1
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-38 Score=245.39 Aligned_cols=75 Identities=28% Similarity=0.606 Sum_probs=73.2
Q ss_pred cCCCcceEEEEEcccCCCccccccCcccccCccEEEEcCCCCccceeeecccccccCCCCcchhhhcCCCCcccc
Q 028299 118 KSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEMKCYVNPSFNYRDAKWDVG 192 (211)
Q Consensus 118 k~prr~~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIADNLgwF~e~~~tIEdi~k~KGe~v~kg 192 (211)
|.++++|+|+|||++|++|++|+|||+||++|||||||+||+|+||||||||||.|.+.+||+||++|||.|.++
T Consensus 4 k~~~~~~~l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~HlIaDnLgwF~d~~~~IEdil~~kGe~V~~~ 78 (100)
T 2e2z_A 4 MVDKPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLMKANGEQVSQD 78 (100)
T ss_dssp CSCCCEEEEEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEEESCCSSCSGGGSCCCHHHHHHHHCCCCSSS
T ss_pred cCCCCcEEEEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccceEeehhhhhhccCCCCHHHHHHHcCCEeeec
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999885
No 2
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=93.56 E-value=0.023 Score=43.01 Aligned_cols=37 Identities=22% Similarity=0.596 Sum_probs=32.1
Q ss_pred EEEEEcccCCCccccccCcccccCccEEEEcCCCCcccee
Q 028299 125 RVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKL 164 (211)
Q Consensus 125 ~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLI 164 (211)
...|.|. ||.+ -.|++...+.|.++|+|++|.-+=.|
T Consensus 21 ~y~ypCr-CGd~--F~IteedLe~ge~iv~C~sCSL~IkV 57 (89)
T 2jr7_A 21 TYFYPCP-CGDN--FSITKEDLENGEDVATCPSCSLIIKV 57 (89)
T ss_dssp EEEEECT-TSSE--EEEEHHHHHHTCCEEECTTTCCEEEE
T ss_pred EEEEcCC-CCCE--EEECHHHHhCCCEEEECCCCccEEEE
Confidence 5789997 9988 68999999999999999999976544
No 3
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=92.96 E-value=0.038 Score=41.22 Aligned_cols=37 Identities=19% Similarity=0.525 Sum_probs=31.1
Q ss_pred EEEEEcccCCCccccccCcccccCccEEEEcCCCCcccee
Q 028299 125 RVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKL 164 (211)
Q Consensus 125 ~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLI 164 (211)
...|.|. || ..-.|++.-.+.|-++|+|++|.-+=.|
T Consensus 21 ~y~ypCr-CG--d~F~it~edL~~ge~iv~C~sCSL~I~V 57 (83)
T 1yop_A 21 MFTYPCP-CG--DRFQIYLDDMFEGEKVAVCPSCSLMIDV 57 (83)
T ss_dssp EEEEEET-TT--EEEEEEHHHHHTTCCEEECSSSCCEEEC
T ss_pred EEEEeCC-CC--CeEEECHHHHhCCCEEEECCCCccEEEE
Confidence 5789997 99 4558999999999999999999975544
No 4
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=92.47 E-value=0.051 Score=40.50 Aligned_cols=50 Identities=20% Similarity=0.426 Sum_probs=37.6
Q ss_pred ccccccccCCCcceEEEEEcccCCCccccccCcccccCccEEEEcCCCCcccee
Q 028299 111 FPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKL 164 (211)
Q Consensus 111 ~P~s~~~k~prr~~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLI 164 (211)
+-+..|.-.+. .-...|.|. ||.+ -.|++...+.|.++|+|++|.-+=.|
T Consensus 15 v~LeDm~~de~-~~~y~y~Cr-CGd~--F~it~edL~~ge~iv~C~sCSL~I~V 64 (83)
T 1wge_A 15 VEIEDFQYDED-SETYFYPCP-CGDN--FAITKEDLENGEDVATCPSCSLIIKV 64 (83)
T ss_dssp EEGGGSCCBTT-TTEEEECCS-SSSC--EEEEHHHHHTTCCEEECTTTCCEEEE
T ss_pred EEHHHceEccC-CCEEEEeCC-CCCE--EEECHHHHhCCCEEEECCCCceEEEE
Confidence 34444554432 346889997 9988 68999999999999999999975544
No 5
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=90.45 E-value=0.12 Score=39.98 Aligned_cols=36 Identities=17% Similarity=0.581 Sum_probs=27.9
Q ss_pred EEEEEcccCCCccccccCcccccCccEEEEcCCCCcccee
Q 028299 125 RVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKL 164 (211)
Q Consensus 125 ~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLI 164 (211)
...|.|. ||.+ -.|.+.-.+.| ++|+|++|..+-.+
T Consensus 110 ~f~~~Cr-CG~~--f~i~~~~l~~~-~~v~C~sCSl~~~v 145 (155)
T 2l6l_A 110 SFYLSCR-CGGK--YSVSKDEAEEV-SLISCDTCSLIIEL 145 (155)
T ss_dssp EEEEECS-SSCE--EEEETTHHHHC-CEEECSSSSCEEEE
T ss_pred EEEEcCC-CCCe--EEecHHHhCCC-CEEECCCCceEEEE
Confidence 5778996 9976 45776666667 88999999987654
No 6
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=79.94 E-value=1.6 Score=29.05 Aligned_cols=35 Identities=26% Similarity=0.496 Sum_probs=26.4
Q ss_pred EEEcccCCCccccccCc---ccccCccEEEEcCCCCcc
Q 028299 127 AFTCNVCGQRTTRAINP---HAYTDGTVFVQCCGCNVF 161 (211)
Q Consensus 127 ~FTC~~C~tRS~k~iSK---~AY~~GvViVqC~GC~n~ 161 (211)
.+.|..|+++...-+.. .|=+--++|.+|..|...
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCE
Confidence 57899999977654433 355666899999999865
No 7
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=78.50 E-value=1.7 Score=36.73 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=23.5
Q ss_pred eEEEEEcccCCCccccccCcccccCccEEEEcCCCCccc
Q 028299 124 MRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFH 162 (211)
Q Consensus 124 ~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~H 162 (211)
....|+|..|++.....+....| +.-..|++|.+..
T Consensus 131 ~~~~f~C~~C~~~~~v~~~~~~~---~~P~~Cp~C~~~~ 166 (279)
T 1ltl_A 131 VKAVFECRGCMRHHAVTQSTNMI---TEPSLCSECGGRS 166 (279)
T ss_dssp EEEEEEETTTCCEEEEECSSSSC---CCCSCCTTTCCCC
T ss_pred EEEEEEcCCCCCEEEEEecCCcc---cCCCcCCCCCCCC
Confidence 45779999999765433332222 2335899999864
No 8
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=76.48 E-value=0.82 Score=37.32 Aligned_cols=36 Identities=25% Similarity=0.468 Sum_probs=28.7
Q ss_pred EEEcccCCCccccccC---cccccCccEEEEcCCCCccc
Q 028299 127 AFTCNVCGQRTTRAIN---PHAYTDGTVFVQCCGCNVFH 162 (211)
Q Consensus 127 ~FTC~~C~tRS~k~iS---K~AY~~GvViVqC~GC~n~H 162 (211)
.++|..|+++....+- |.|-+.-++|+.|..|..+.
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w 175 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW 175 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence 4689999998886554 45777889999999998753
No 9
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=76.19 E-value=1.2 Score=38.95 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=29.9
Q ss_pred EEEEcccCCCccccccC---cccccCccEEEEcCCCCccc
Q 028299 126 VAFTCNVCGQRTTRAIN---PHAYTDGTVFVQCCGCNVFH 162 (211)
Q Consensus 126 l~FTC~~C~tRS~k~iS---K~AY~~GvViVqC~GC~n~H 162 (211)
-.|+|..|+++....+- |.|=+--++|+.|..|.++.
T Consensus 267 ~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w 306 (309)
T 1pqv_S 267 DRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRW 306 (309)
T ss_pred ccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCce
Confidence 36999999999886543 55777779999999998753
No 10
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=72.49 E-value=1.5 Score=33.15 Aligned_cols=34 Identities=21% Similarity=0.302 Sum_probs=28.5
Q ss_pred EEcccCCCccccccC---cccccCccEEEEcCCCCcc
Q 028299 128 FTCNVCGQRTTRAIN---PHAYTDGTVFVQCCGCNVF 161 (211)
Q Consensus 128 FTC~~C~tRS~k~iS---K~AY~~GvViVqC~GC~n~ 161 (211)
++|.+|+++.+..+- |.|-+.-++|.+|..|..+
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~ 109 (113)
T 3h0g_I 73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFA 109 (113)
T ss_dssp SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCC
T ss_pred cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCE
Confidence 689999999887664 5588899999999999865
No 11
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=70.81 E-value=1.7 Score=27.47 Aligned_cols=32 Identities=22% Similarity=0.692 Sum_probs=26.1
Q ss_pred EcccCCCccccccCcccccCccEEEEcCCCCcccee
Q 028299 129 TCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKL 164 (211)
Q Consensus 129 TC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLI 164 (211)
.|..|+...+..+- ++++.+.+|..|...+-+
T Consensus 2 lC~~C~~peT~l~~----~~~~~~l~C~aCG~~~~v 33 (36)
T 1k81_A 2 ICRECGKPDTKIIK----EGRVHLLKCMACGAIRPI 33 (36)
T ss_dssp CCSSSCSCEEEEEE----ETTEEEEEEETTTEEEEE
T ss_pred CCcCCCCCCcEEEE----eCCcEEEEhhcCCCcccc
Confidence 48899998888664 469999999999887765
No 12
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=68.37 E-value=2.1 Score=28.68 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=24.6
Q ss_pred EEcccCCCcccccc---CcccccCccEEEEcCCCCcc
Q 028299 128 FTCNVCGQRTTRAI---NPHAYTDGTVFVQCCGCNVF 161 (211)
Q Consensus 128 FTC~~C~tRS~k~i---SK~AY~~GvViVqC~GC~n~ 161 (211)
++|.+|+++.+..+ .|.|-+.=+++..|..|..+
T Consensus 10 ~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 10 FTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp SCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred cCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCe
Confidence 57888888777544 34566777888888888754
No 13
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=66.69 E-value=2.8 Score=28.89 Aligned_cols=24 Identities=38% Similarity=1.028 Sum_probs=18.2
Q ss_pred EEcccCCCccccccCcccccCccEEEEcCCCCcc
Q 028299 128 FTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVF 161 (211)
Q Consensus 128 FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~ 161 (211)
..| +|+.. |..|...|||..|..|
T Consensus 17 ~~C-~C~~~---------~~~g~~mI~Cd~C~~W 40 (72)
T 1wee_A 17 VDC-KCGTK---------DDDGERMLACDGCGVW 40 (72)
T ss_dssp ECC-TTCCC---------SCCSSCEEECSSSCEE
T ss_pred eEe-eCCCc---------cCCCCcEEECCCCCCc
Confidence 356 58764 5668889999999776
No 14
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=63.42 E-value=4.3 Score=29.22 Aligned_cols=40 Identities=23% Similarity=0.598 Sum_probs=30.0
Q ss_pred eEEEEEcccCCCccccccCcccccCccEEEEcCCCCccceeeeccccccc
Q 028299 124 MRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHE 173 (211)
Q Consensus 124 ~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIADNLgwF~e 173 (211)
|.++|-|. |+..+. -+.|.--.+|+ |...|-+. .|..|.+
T Consensus 1 mY~vv~C~-C~~~~~-------~~~~~kT~~C~-CG~~~~~~-k~rif~~ 40 (71)
T 1gh9_A 1 MYIIFRCD-CGRALY-------SREGAKTRKCV-CGRTVNVK-DRRIFGR 40 (71)
T ss_dssp CEEEEEET-TSCCEE-------EETTCSEEEET-TTEEEECC-SSSCBSC
T ss_pred CeEEEECC-CCCEEE-------EcCCCcEEECC-CCCeeeec-eEEEEEe
Confidence 57899999 998643 23366678999 99999764 5777764
No 15
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=63.05 E-value=2 Score=30.78 Aligned_cols=33 Identities=18% Similarity=0.494 Sum_probs=23.0
Q ss_pred eEEEEEcccCCCccccccCcccccCccEEEEcCCCCcccee
Q 028299 124 MRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKL 164 (211)
Q Consensus 124 ~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLI 164 (211)
..+.|.|..|+...... .... |+|+.|..+=|.
T Consensus 25 ~~v~Y~C~~CG~~~e~~------~~d~--irCp~CG~RILy 57 (70)
T 1twf_L 25 ATLKYICAECSSKLSLS------RTDA--VRCKDCGHRILL 57 (70)
T ss_dssp CCCCEECSSSCCEECCC------TTST--TCCSSSCCCCCB
T ss_pred ceEEEECCCCCCcceeC------CCCC--ccCCCCCceEeE
Confidence 45789999999986543 1122 489999976543
No 16
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=58.56 E-value=4.1 Score=25.78 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=30.1
Q ss_pred EEEcccCCCccccccCcccccCccEEEEcCCCCccceeeecccc
Q 028299 127 AFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNL 170 (211)
Q Consensus 127 ~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIADNLgw 170 (211)
.|.|..|+..-...-.-...|.|.---+|+-|.......++++-
T Consensus 14 ~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~~~~~ 57 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDESAMP 57 (62)
T ss_dssp EEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECTTCSC
T ss_pred CccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCccccc
Confidence 49999999754321111145667667899999988877777664
No 17
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=55.37 E-value=3.9 Score=30.34 Aligned_cols=39 Identities=18% Similarity=0.455 Sum_probs=29.7
Q ss_pred ceEEEEEcccCCCcccc--ccCcccccCccEEEEcCCCCcccee
Q 028299 123 RMRVAFTCNVCGQRTTR--AINPHAYTDGTVFVQCCGCNVFHKL 164 (211)
Q Consensus 123 ~~~l~FTC~~C~tRS~k--~iSK~AY~~GvViVqC~GC~n~HLI 164 (211)
.+--.|+|-.|++-.+- .|.| ..|+-.+.|.-|...+-.
T Consensus 19 ~L~t~F~CPfCnh~~sV~vkidk---~~~~g~l~C~~Cg~~~~~ 59 (85)
T 1wii_A 19 TLETQFTCPFCNHEKSCDVKMDR---ARNTGVISCTVCLEEFQT 59 (85)
T ss_dssp CCSSCCCCTTTCCSSCEEEEEET---TTTEEEEEESSSCCEEEE
T ss_pred CCCCeEcCCCCCCCCeEEEEEEc---cCCEEEEEcccCCCeEEe
Confidence 45568999999998432 3443 478999999999987755
No 18
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=55.33 E-value=4.8 Score=33.50 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=23.2
Q ss_pred eEEEEEc--ccCCCccccccCcccccCccEEEEcCCCCcc
Q 028299 124 MRVAFTC--NVCGQRTTRAINPHAYTDGTVFVQCCGCNVF 161 (211)
Q Consensus 124 ~~l~FTC--~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~ 161 (211)
....|+| ..|++.....+..+.+..=+--..|++|.+.
T Consensus 138 ~~~~f~C~~~~C~~~~~~~~~~~~~~~~~~P~~Cp~C~~~ 177 (268)
T 2vl6_A 138 YKATYKHIHPDCMQEFEWPEDEEMPEVLEMPTICPKCGKP 177 (268)
T ss_dssp EECEEEEECTTCCCEEESSTTSCCCTTCCCCSBCTTTCCB
T ss_pred EEEEEECCCCCCCCEEeeeecccCCCcccCCccCCCCCCC
Confidence 3567999 9999765444211222222334679999985
No 19
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=52.98 E-value=5 Score=31.69 Aligned_cols=32 Identities=25% Similarity=0.511 Sum_probs=22.8
Q ss_pred ceEEEEEcccCCCccccccCcccccCccEEEEcCCCCcc
Q 028299 123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVF 161 (211)
Q Consensus 123 ~~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~ 161 (211)
...-.|||..|+..+.+. .| +-|-+|..|...
T Consensus 56 ~q~akytCPfCGk~~vKR---~a----vGIW~C~~Cgk~ 87 (116)
T 3cc2_Z 56 EMNEDHACPNCGEDRVDR---QG----TGIWQCSYCDYK 87 (116)
T ss_dssp HHHSCEECSSSCCEEEEE---EE----TTEEEETTTCCE
T ss_pred HhccCCcCCCCCCceeEe---cC----ceeEECCCCCCE
Confidence 344579999999755443 33 458899999854
No 20
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=51.68 E-value=7.3 Score=29.69 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=27.8
Q ss_pred EEEcccCCCcccccc---CcccccCccEEEEcCCCCcc
Q 028299 127 AFTCNVCGQRTTRAI---NPHAYTDGTVFVQCCGCNVF 161 (211)
Q Consensus 127 ~FTC~~C~tRS~k~i---SK~AY~~GvViVqC~GC~n~ 161 (211)
.++|..|+++-+..+ .|.|-+.-++|.+|..|..+
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~ 109 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHI 109 (122)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCE
T ss_pred CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCE
Confidence 468999999877654 46688888999999999754
No 21
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=51.13 E-value=8.7 Score=26.30 Aligned_cols=26 Identities=27% Similarity=0.805 Sum_probs=19.5
Q ss_pred EEcccCCCccccccCcccccCccEEEEcCCCCcc-ce
Q 028299 128 FTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVF-HK 163 (211)
Q Consensus 128 FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~-HL 163 (211)
..|.+|+... .|-.+|+|.+|..+ |+
T Consensus 19 ~~C~~C~~~~----------~~~~mi~CD~C~~wfH~ 45 (75)
T 2k16_A 19 WICPGCNKPD----------DGSPMIGCDDCDDWYHW 45 (75)
T ss_dssp ECBTTTTBCC----------SSCCEEECSSSSSEEEH
T ss_pred cCCCCCCCCC----------CCCCEEEcCCCCccccc
Confidence 4599998652 36678999999876 54
No 22
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=49.15 E-value=3.6 Score=32.39 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=0.0
Q ss_pred EEEcccCCCcccccc---CcccccCccEEEEcCCCCcc
Q 028299 127 AFTCNVCGQRTTRAI---NPHAYTDGTVFVQCCGCNVF 161 (211)
Q Consensus 127 ~FTC~~C~tRS~k~i---SK~AY~~GvViVqC~GC~n~ 161 (211)
..+|..|+++.+..+ .|.|-+.-++|.+|..|..+
T Consensus 92 ~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~C~~~ 129 (133)
T 3qt1_I 92 DRECPKCHSRENVFFQLQIRSADEPMTTFYKCVNCGHR 129 (133)
T ss_dssp --------------------------------------
T ss_pred cCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCCCCCE
Confidence 479999999988766 45688889999999999864
No 23
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=46.47 E-value=7.4 Score=30.14 Aligned_cols=25 Identities=20% Similarity=0.744 Sum_probs=18.2
Q ss_pred EcccCCCccccccCcccccCccEEEEcCCCCcc-ce
Q 028299 129 TCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVF-HK 163 (211)
Q Consensus 129 TC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~-HL 163 (211)
.| +|+.. |..+--.|+|.+|..| |.
T Consensus 10 ~C-~C~~~---------~~~~~~mi~Cd~C~~WfH~ 35 (174)
T 2ri7_A 10 YC-ICKTP---------EDESKFYIGCDRCQNWYHG 35 (174)
T ss_dssp ET-TTTEE---------CCTTSCEEECTTTCCEEEH
T ss_pred Ee-eCCCC---------CCCCCCEeECCCCCchhCh
Confidence 57 88753 4556678999999877 54
No 24
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=45.16 E-value=14 Score=24.64 Aligned_cols=20 Identities=40% Similarity=0.762 Sum_probs=16.2
Q ss_pred ccCCCcceEEEEEcccCCCc
Q 028299 117 TKSPRRRMRVAFTCNVCGQR 136 (211)
Q Consensus 117 ~k~prr~~~l~FTC~~C~tR 136 (211)
+.+....|.+-|+|..|++|
T Consensus 27 ~RsaDE~mT~Fy~C~~Cg~~ 46 (50)
T 1tfi_A 27 TRSADEPMTTFVVCNECGNR 46 (50)
T ss_dssp SSSSSSCCEEEEEESSSCCE
T ss_pred CcCCCCCceEEEEcCCCCCe
Confidence 34555679999999999987
No 25
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=45.11 E-value=8.4 Score=31.56 Aligned_cols=24 Identities=29% Similarity=0.901 Sum_probs=18.0
Q ss_pred EcccCCCccccccCcccccCc---cEEEEcCCCCcc
Q 028299 129 TCNVCGQRTTRAINPHAYTDG---TVFVQCCGCNVF 161 (211)
Q Consensus 129 TC~~C~tRS~k~iSK~AY~~G---vViVqC~GC~n~ 161 (211)
.|.+|+ ..|..+ .-+|||.+|+.|
T Consensus 4 ~CpiC~---------k~Y~~~~~~~~MIqCd~C~~W 30 (183)
T 3lqh_A 4 FCPLCD---------KCYDDDDYESKMMQCGKCDRW 30 (183)
T ss_dssp BCTTTC---------CBCTTCCTTCCEEECTTTCCE
T ss_pred cCCCCc---------CccCCcccCCCeEECCCCCcc
Confidence 488886 356655 459999999986
No 26
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=45.09 E-value=9 Score=25.45 Aligned_cols=26 Identities=27% Similarity=0.920 Sum_probs=18.3
Q ss_pred EcccCCCccccccCcccccCccEEEEcCCCCcc-ce
Q 028299 129 TCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVF-HK 163 (211)
Q Consensus 129 TC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~-HL 163 (211)
.|.+|+. .|..+...|||..|..| |.
T Consensus 8 ~C~~C~~---------~~~~~~~mI~Cd~C~~WfH~ 34 (64)
T 1we9_A 8 QCGACGE---------SYAADEFWICCDLCEMWFHG 34 (64)
T ss_dssp CCSSSCC---------CCCSSSCEEECSSSCCEEET
T ss_pred CCCCCCC---------ccCCCCCEEEccCCCCCCCc
Confidence 3667764 35556778999999776 44
No 27
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=44.29 E-value=11 Score=27.71 Aligned_cols=31 Identities=29% Similarity=0.585 Sum_probs=21.9
Q ss_pred eEEEEEcccCCCccccccCcccccCccEEEEcCCCCcc
Q 028299 124 MRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVF 161 (211)
Q Consensus 124 ~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~ 161 (211)
+...|+|..||....+. .++-|.+|+.|...
T Consensus 24 q~~~y~Cp~CG~~~v~r-------~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 24 MNEDHACPNCGEDRVDR-------QGTGIWQCSYCDYK 54 (83)
T ss_dssp HHSCEECSSSCCEEEEE-------EETTEEEETTTCCE
T ss_pred ccccCcCCCCCCcceec-------cCCCeEECCCCCCE
Confidence 34579999999754432 23458899999863
No 28
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=44.12 E-value=6.7 Score=31.23 Aligned_cols=32 Identities=25% Similarity=0.588 Sum_probs=27.2
Q ss_pred EcccCCCccccccCcccccCccEEEEcCCCCcccee
Q 028299 129 TCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKL 164 (211)
Q Consensus 129 TC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLI 164 (211)
+|..|+...+..+- ++++.+.+|..|....-+
T Consensus 104 lC~~C~sPdT~l~k----~~r~~~l~C~ACGa~~~V 135 (138)
T 1nee_A 104 ICHECNRPDTRIIR----EGRISLLKCEACGAKAPL 135 (138)
T ss_dssp HHTCCSSCSSCCEE----ETTTTEEECSTTSCCCCS
T ss_pred ECCCCCCcCcEEEE----cCCeEEEEccCCCCCccc
Confidence 79999999998873 469999999999887654
No 29
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=42.83 E-value=6.8 Score=31.62 Aligned_cols=34 Identities=29% Similarity=0.659 Sum_probs=28.0
Q ss_pred EEcccCCCccccccCcccccCccEEEEcCCCCccceee
Q 028299 128 FTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLV 165 (211)
Q Consensus 128 FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIA 165 (211)
-+|..|+...+..+- ++++.+.+|..|....-+.
T Consensus 105 VlC~~C~sPdT~L~k----~~r~~~l~C~ACGa~~~V~ 138 (148)
T 2d74_B 105 VICPVCGSPDTKIIK----RDRFHFLKCEACGAETPIQ 138 (148)
T ss_dssp SSCSSSCCTTCCCCB----SSSSBCCCCSSSCCCCCCC
T ss_pred EECCCCCCcCcEEEE----eCCEEEEEecCCCCCcccc
Confidence 479999999998874 4689999999998876553
No 30
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=42.78 E-value=10 Score=24.70 Aligned_cols=20 Identities=35% Similarity=0.811 Sum_probs=15.3
Q ss_pred ccccCccEEEEcC-CCCcc-ce
Q 028299 144 HAYTDGTVFVQCC-GCNVF-HK 163 (211)
Q Consensus 144 ~AY~~GvViVqC~-GC~n~-HL 163 (211)
+.|..+.-.|+|. +|+.| |.
T Consensus 10 ~p~~~~~~mI~Cd~~C~~WfH~ 31 (52)
T 2kgg_A 10 RPCKDKVDWVQCDGGCDEWFHQ 31 (52)
T ss_dssp CCCCTTCCEEECTTTTCCEEET
T ss_pred CccCCCCcEEEeCCCCCccCcc
Confidence 3566678889999 89876 54
No 31
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=41.42 E-value=10 Score=19.15 Aligned_cols=10 Identities=50% Similarity=1.381 Sum_probs=8.1
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 8899998753
No 32
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=41.05 E-value=12 Score=27.19 Aligned_cols=32 Identities=22% Similarity=0.525 Sum_probs=23.6
Q ss_pred ceEEEEEcccCCCccccccCcccccCccEEEEcCCCCcc
Q 028299 123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVF 161 (211)
Q Consensus 123 ~~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~ 161 (211)
.+.-.|||..|+.-..+.. ++=|-+|..|...
T Consensus 23 ~q~~ky~C~fCgk~~vkR~-------a~GIW~C~~C~~~ 54 (73)
T 1ffk_W 23 KHKKKYKCPVCGFPKLKRA-------STSIWVCGHCGYK 54 (73)
T ss_pred hcccCccCCCCCCceeEEE-------EeEEEECCCCCcE
Confidence 4556799999997655543 3678999999753
No 33
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=40.45 E-value=18 Score=30.12 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=28.3
Q ss_pred EEEcccCCCccccccCcccccCccEEEEcCCCCccceeeecccccccC
Q 028299 127 AFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEM 174 (211)
Q Consensus 127 ~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIADNLgwF~e~ 174 (211)
...|..|+.+-...- ....+ .+-+|+.|. .++-.|.=||+|.
T Consensus 121 ~~~C~~C~~~~~~~~---~~~~~-~~p~C~~Cg--g~lrP~Vv~FgE~ 162 (249)
T 1m2k_A 121 VVRCTSCNNSFEVES---APKIP-PLPKCDKCG--SLLRPGVVWAGEM 162 (249)
T ss_dssp EEEESSSSCEEECSS---CCCSS-SCCBCSSSS--SBEEEEECCTTSC
T ss_pred eeEeCCCCCcccchh---hccCC-CCCCCCCCC--CCcCCeEEecCCC
Confidence 467999987522110 12334 357999998 4688899999885
No 34
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=38.68 E-value=12 Score=18.84 Aligned_cols=10 Identities=40% Similarity=1.006 Sum_probs=7.7
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 3 ~~C~~C~k~f 12 (29)
T 1rik_A 3 FACPECPKRF 12 (29)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCCCchh
Confidence 7899998653
No 35
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=38.14 E-value=13 Score=18.75 Aligned_cols=10 Identities=50% Similarity=1.481 Sum_probs=8.0
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 4 ~~C~~C~k~f 13 (28)
T 2kvf_A 4 YSCSVCGKRF 13 (28)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCCCccc
Confidence 8899998753
No 36
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=37.21 E-value=13 Score=30.26 Aligned_cols=20 Identities=10% Similarity=0.004 Sum_probs=11.9
Q ss_pred CcceEEEEEcccCCCccccc
Q 028299 121 RRRMRVAFTCNVCGQRTTRA 140 (211)
Q Consensus 121 rr~~~l~FTC~~C~tRS~k~ 140 (211)
|+...+.+.|+.|+..++-.
T Consensus 64 RG~aNfv~KCk~C~re~Si~ 83 (164)
T 1zso_A 64 RGTANFMIKWTEYPKYSTIN 83 (164)
T ss_dssp SCEESEEECCSSSSCCEEEE
T ss_pred CcceeEEEeccccCCcceEE
Confidence 45556666666666655543
No 37
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=36.99 E-value=9.5 Score=31.62 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=28.2
Q ss_pred EEEcccCCCccccccCcccccCccEEEEcCCCCccceeeecccccccC
Q 028299 127 AFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEM 174 (211)
Q Consensus 127 ~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIADNLgwF~e~ 174 (211)
...|..|+.+-...--......+ .+-+|+.|. .++-.|.=||+|.
T Consensus 121 ~~~C~~C~~~~~~~~~~~~~~~~-~~p~C~~Cg--g~lrP~vv~FgE~ 165 (246)
T 1yc5_A 121 EYYCVRCEKKYTVEDVIKKLESS-DVPLCDDCN--SLIRPNIVFFGEN 165 (246)
T ss_dssp EEEETTTCCEEEHHHHHHHTTTC-SSCBCTTTC--CBEEEEECCBTSB
T ss_pred eeEcCCCCCCCcHHHHHHHhccC-CCCCCCCCC--CccCcceEECCCC
Confidence 46799999852210000111233 356999998 4788999999885
No 38
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.06 E-value=20 Score=29.18 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=30.5
Q ss_pred EcccCCCccccccCcccccCccEEEEcCCCCccceeeecccc
Q 028299 129 TCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNL 170 (211)
Q Consensus 129 TC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIADNLgw 170 (211)
+|..|+...+..+-- -++++.+.+|..|....-+.=+.++
T Consensus 105 lC~~C~sPdT~L~~~--~~~r~~~l~C~ACGa~~~V~~~~Kl 144 (157)
T 2e9h_A 105 LCPECENPETDLHVN--PKKQTIGNSCKACGYRGMLDTHHKL 144 (157)
T ss_dssp SCTTTCCSCCEEEEE--TTTTEEEEECSSSCCEEECCCCSSH
T ss_pred ECCCCCCCccEEEEe--cCCCEEEEEccCCCCCCcccchhhh
Confidence 799999999886630 1278999999999988777544444
No 39
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=42.17 E-value=7.7 Score=19.46 Aligned_cols=11 Identities=36% Similarity=1.147 Sum_probs=8.2
Q ss_pred EEEcccCCCcc
Q 028299 127 AFTCNVCGQRT 137 (211)
Q Consensus 127 ~FTC~~C~tRS 137 (211)
.|.|..|+.+-
T Consensus 2 p~~C~~C~k~f 12 (26)
T 2lvu_A 2 PYVCERCGKRF 12 (26)
Confidence 37899998653
No 40
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=35.83 E-value=17 Score=30.24 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=27.8
Q ss_pred EEEcccCCCccccccCcccccCccEEEEcCCCCccceeeecccccccC
Q 028299 127 AFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEM 174 (211)
Q Consensus 127 ~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIADNLgwF~e~ 174 (211)
...|..|+.+-...--......+. +-+|+.|.. .++-.|.=||+|.
T Consensus 123 ~~~C~~C~~~~~~~~~~~~~~~~~-~p~C~~Cgg-~~lrP~Vv~FgE~ 168 (253)
T 1ma3_A 123 KLDCLDCHETYDWSEFVEDFNKGE-IPRCRKCGS-YYVKPRVVLFGEP 168 (253)
T ss_dssp EEEETTTCCEEEGGGTHHHHHTTC-CCCCTTTCC-SCEEEEECCBTSB
T ss_pred eeeeCCCCCcCcHHHHHHHhccCC-CCCCCCCCC-ccccceEEEeCCC
Confidence 457999987522110001112333 479999974 1678888899885
No 41
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=35.74 E-value=17 Score=31.56 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=28.5
Q ss_pred EEEcccCCCccccccCcccccCccEEEEcCCCCccceeeecccccccC
Q 028299 127 AFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNLFHEM 174 (211)
Q Consensus 127 ~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIADNLgwF~e~ 174 (211)
...|..|+.+-...--+.....+ .+-+|+.|. .+|-.+.=||+|.
T Consensus 139 ~~~C~~C~~~~~~~~~~~~i~~~-~~P~C~~Cg--g~lrP~IV~FGE~ 183 (285)
T 3glr_A 139 SATCTVCQRPFPGEDIRADVMAD-RVPRCPVCT--GVVKPDIVFFGEP 183 (285)
T ss_dssp EEEETTTCCEEEGGGGHHHHHTT-CCCBCTTTC--CBEEEEECCTTSB
T ss_pred eEEECCCCCcCCHHHHHHHhhcC-CCCCCCCCC--CccCCcEEEeCCc
Confidence 45899999653321101111122 247899997 5799999999984
No 42
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=35.68 E-value=13 Score=28.77 Aligned_cols=30 Identities=17% Similarity=0.543 Sum_probs=22.7
Q ss_pred eEEEEEcccCCCccccccCcccccCccEEEEcCCCCc
Q 028299 124 MRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNV 160 (211)
Q Consensus 124 ~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n 160 (211)
+...|||..|+....+. .++=|-+|..|..
T Consensus 33 q~aky~CpfCgk~~vKR-------~a~GIW~C~kCg~ 62 (103)
T 4a17_Y 33 QHAKYGCPFCGKVAVKR-------AAVGIWKCKPCKK 62 (103)
T ss_dssp HHSCEECTTTCCEEEEE-------EETTEEEETTTTE
T ss_pred hhcCCCCCCCCCceeee-------cCcceEEcCCCCC
Confidence 34569999999876554 3467889999974
No 43
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=35.26 E-value=12 Score=19.12 Aligned_cols=10 Identities=20% Similarity=0.870 Sum_probs=7.8
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvg_A 4 YRCPLCRAGC 13 (27)
T ss_dssp EEETTTTEEE
T ss_pred cCCCCCCccc
Confidence 8899998653
No 44
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=34.21 E-value=10 Score=18.87 Aligned_cols=10 Identities=20% Similarity=0.956 Sum_probs=7.6
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 7899998653
No 45
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=33.91 E-value=16 Score=19.29 Aligned_cols=10 Identities=20% Similarity=0.906 Sum_probs=8.3
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 8 ~~C~~C~k~f 17 (35)
T 2elx_A 8 YVCALCLKKF 17 (35)
T ss_dssp EECSSSCCEE
T ss_pred eECCCCcchh
Confidence 8999998753
No 46
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=33.89 E-value=11 Score=29.30 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=20.4
Q ss_pred eEEEEEcccCCCccccccCcccccCccEEEEcCCCCccc
Q 028299 124 MRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFH 162 (211)
Q Consensus 124 ~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~H 162 (211)
+..-|.|+.||..-...+.+ =++||.|+...
T Consensus 64 ~v~p~~C~~CG~~F~~~~~k--------PsrCP~CkSe~ 94 (105)
T 2gmg_A 64 LIKPAQCRKCGFVFKAEINI--------PSRCPKCKSEW 94 (105)
T ss_dssp EECCCBBTTTCCBCCCCSSC--------CSSCSSSCCCC
T ss_pred EEECcChhhCcCeecccCCC--------CCCCcCCCCCc
Confidence 44568999999884112221 27999998753
No 47
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=33.13 E-value=17 Score=19.39 Aligned_cols=11 Identities=36% Similarity=0.875 Sum_probs=8.7
Q ss_pred EEcccCCCccc
Q 028299 128 FTCNVCGQRTT 138 (211)
Q Consensus 128 FTC~~C~tRS~ 138 (211)
|.|..|+.+-.
T Consensus 8 ~~C~~C~k~f~ 18 (35)
T 1srk_A 8 FVCRICLSAFT 18 (35)
T ss_dssp EECSSSCCEES
T ss_pred eeCCCCCcccC
Confidence 89999987543
No 48
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=32.54 E-value=7.1 Score=31.11 Aligned_cols=32 Identities=16% Similarity=0.459 Sum_probs=22.0
Q ss_pred EcccCCCccccccCcccccCccEEEEcCCCCcccee
Q 028299 129 TCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKL 164 (211)
Q Consensus 129 TC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLI 164 (211)
+|..|+...+..+- ++++.+.+|..|....-+
T Consensus 105 lC~~C~sPdT~l~k----~~r~~~l~C~ACGa~~~V 136 (139)
T 3cw2_K 105 ECSTCKSLDTILKK----EKKSWYIVCLACGAQTPV 136 (139)
T ss_dssp SCCSSSSSCCCSCS----SCSTTTSSCCC-------
T ss_pred ECCCCCCcCcEEEE----eCCeEEEEecCCCCCCcc
Confidence 79999999988775 469999999999887654
No 49
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=32.44 E-value=20 Score=30.31 Aligned_cols=39 Identities=18% Similarity=0.437 Sum_probs=23.7
Q ss_pred eEEEEEcccCCCccccccCc-------ccc----------cCccEEEEcCCCCccce
Q 028299 124 MRVAFTCNVCGQRTTRAINP-------HAY----------TDGTVFVQCCGCNVFHK 163 (211)
Q Consensus 124 ~~l~FTC~~C~tRS~k~iSK-------~AY----------~~GvViVqC~GC~n~HL 163 (211)
|+-..+|..|+.. .+.|-. .+| ..-+.+.+|+.|....+
T Consensus 9 ~~~~~~C~~Cg~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~ 64 (416)
T 4e2x_A 9 VSPPTACRVCGGG-VQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQL 64 (416)
T ss_dssp ---CEECTTTSCE-EEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEE
T ss_pred cccCCcCCCCCCe-eeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceee
Confidence 4445799999998 554411 112 11367899999986554
No 50
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=32.37 E-value=14 Score=28.02 Aligned_cols=29 Identities=17% Similarity=0.550 Sum_probs=22.3
Q ss_pred EEEEEcccCCCccccccCcccccCccEEEEcCCCCc
Q 028299 125 RVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNV 160 (211)
Q Consensus 125 ~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n 160 (211)
...|||..|+.-..+. .++=|-+|..|..
T Consensus 34 ~~ky~CpfCgk~~vkR-------~a~GIW~C~~Cg~ 62 (92)
T 3iz5_m 34 HSKYFCEFCGKFAVKR-------KAVGIWGCKDCGK 62 (92)
T ss_dssp HSCBCCTTTCSSCBEE-------EETTEEECSSSCC
T ss_pred hccccCcccCCCeeEe-------cCcceEEcCCCCC
Confidence 4468999999886554 3467889999975
No 51
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=32.26 E-value=17 Score=26.27 Aligned_cols=34 Identities=26% Similarity=0.566 Sum_probs=23.7
Q ss_pred ceEEEEEcccCCCccccccCcccccCccEEEEcCCCCccce
Q 028299 123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHK 163 (211)
Q Consensus 123 ~~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HL 163 (211)
...+.-.|+.|+..+.-.+ .++-.+|++|..+-.
T Consensus 33 ~~~v~I~CnDC~~~s~v~~-------h~lg~kC~~C~SyNT 66 (79)
T 2k2d_A 33 NMTVDILCNDCNGRSTVQF-------HILGMKCKICESYNT 66 (79)
T ss_dssp CCEEEEEESSSCCEEEEEC-------CTTCCCCTTTSCCCE
T ss_pred CCEeEEECCCCCCCccCCc-------eeecccCcCCCCcCe
Confidence 4567788999999886554 223347999987643
No 52
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=31.81 E-value=14 Score=27.62 Aligned_cols=31 Identities=35% Similarity=0.680 Sum_probs=23.1
Q ss_pred eEEEEEcccCCCccccccCcccccCccEEEEcCCCCcc
Q 028299 124 MRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVF 161 (211)
Q Consensus 124 ~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~ 161 (211)
+...|||..|+....+. .++=|-+|..|...
T Consensus 32 q~~ky~CpfCGk~~vkR-------~a~GIW~C~kCg~~ 62 (83)
T 3j21_i 32 MRQKHTCPVCGRKAVKR-------ISTGIWQCQKCGAT 62 (83)
T ss_dssp HHSCBCCSSSCSSCEEE-------EETTEEEETTTCCE
T ss_pred hhcccCCCCCCCceeEe-------cCcCeEEcCCCCCE
Confidence 34469999999886554 34678899999753
No 53
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=31.59 E-value=10 Score=28.17 Aligned_cols=41 Identities=24% Similarity=0.535 Sum_probs=26.8
Q ss_pred cceEEEEEcccCCCcccc-ccCccccc-CccEEEEcCCCCccc
Q 028299 122 RRMRVAFTCNVCGQRTTR-AINPHAYT-DGTVFVQCCGCNVFH 162 (211)
Q Consensus 122 r~~~l~FTC~~C~tRS~k-~iSK~AY~-~GvViVqC~GC~n~H 162 (211)
..-++.|||+.||.--.| .+.+|.+. +|--...|--|....
T Consensus 5 ~~~MV~F~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F 47 (79)
T 1wjv_A 5 SSGMVFFTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDF 47 (79)
T ss_dssp SCCCCEEEESSSCCEEETTHHHHHHHHCTTCCEEEETTTTEEE
T ss_pred CCceeEEEcCCCCCeeecccchhHHhhCCCCCcEEecccCCee
Confidence 356789999999976664 67777653 233345555555443
No 54
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=31.08 E-value=24 Score=33.75 Aligned_cols=22 Identities=14% Similarity=0.445 Sum_probs=17.2
Q ss_pred ccCcccccCccEEEEcCCCCcc
Q 028299 140 AINPHAYTDGTVFVQCCGCNVF 161 (211)
Q Consensus 140 ~iSK~AY~~GvViVqC~GC~n~ 161 (211)
+=|+..++.+...|+|++|+.|
T Consensus 46 kk~~~~~n~~~~mI~CD~C~~W 67 (528)
T 3pur_A 46 KKSHHHKKNDFQWIGCDSCQTW 67 (528)
T ss_dssp CCTTTTTTSTTSEEECTTTCCE
T ss_pred cccccCCCcCCCEEECCCCCcC
Confidence 3345567789999999999965
No 55
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=30.82 E-value=26 Score=29.35 Aligned_cols=37 Identities=22% Similarity=0.450 Sum_probs=21.9
Q ss_pred eEEEEEcccCCCccc-cccCcc-cccCccEEEEcCCCCc
Q 028299 124 MRVAFTCNVCGQRTT-RAINPH-AYTDGTVFVQCCGCNV 160 (211)
Q Consensus 124 ~~l~FTC~~C~tRS~-k~iSK~-AY~~GvViVqC~GC~n 160 (211)
-.+.|+|..|++.+. .-+... .+..-...++|+.|+.
T Consensus 19 ~~l~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~ 57 (206)
T 3flo_B 19 VTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQ 57 (206)
T ss_dssp CCEEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCC
T ss_pred ceeEEECCCCCCccCCCCcccCCCcccccccccCCCCCC
Confidence 468999999998654 111110 0111123688999986
No 56
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=30.78 E-value=31 Score=26.53 Aligned_cols=37 Identities=19% Similarity=0.418 Sum_probs=21.3
Q ss_pred EcccCCCccccccCc-ccccCc---cEEEEcCCCCccceee
Q 028299 129 TCNVCGQRTTRAINP-HAYTDG---TVFVQCCGCNVFHKLV 165 (211)
Q Consensus 129 TC~~C~tRS~k~iSK-~AY~~G---vViVqC~GC~n~HLIA 165 (211)
.|+.|++-=.--++- .--.++ .|+++|-.|...+-+.
T Consensus 62 ~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 62 YCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYP 102 (123)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEe
Confidence 699998732211111 111122 6999999998766543
No 57
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=30.66 E-value=19 Score=17.87 Aligned_cols=9 Identities=33% Similarity=1.224 Sum_probs=7.3
Q ss_pred EEcccCCCc
Q 028299 128 FTCNVCGQR 136 (211)
Q Consensus 128 FTC~~C~tR 136 (211)
|.|..|+..
T Consensus 3 ~~C~~C~k~ 11 (29)
T 2m0f_A 3 LKCRECGKQ 11 (29)
T ss_dssp EECTTTSCE
T ss_pred ccCCCCCCc
Confidence 789999864
No 58
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=30.54 E-value=13 Score=27.12 Aligned_cols=30 Identities=20% Similarity=0.668 Sum_probs=22.3
Q ss_pred eEEEEEcccCCCccccccCcccccCccEEEEcCCCCc
Q 028299 124 MRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNV 160 (211)
Q Consensus 124 ~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n 160 (211)
+...|||..|+....+. .++=|-+|..|..
T Consensus 23 q~~ky~C~fCgk~~vkR-------~a~GIW~C~~C~~ 52 (72)
T 3jyw_9 23 QHARYDCSFCGKKTVKR-------GAAGIWTCSCCKK 52 (72)
T ss_dssp HHSCBCCSSCCSSCBSB-------CSSSCBCCSSSCC
T ss_pred hccCccCCCCCCceeEe-------cCCCeEECCCCCC
Confidence 44569999999876554 3466789999974
No 59
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=30.34 E-value=35 Score=26.00 Aligned_cols=36 Identities=17% Similarity=0.418 Sum_probs=21.3
Q ss_pred EcccCCCccccccCc-ccccCc---cEEEEcCCCCcccee
Q 028299 129 TCNVCGQRTTRAINP-HAYTDG---TVFVQCCGCNVFHKL 164 (211)
Q Consensus 129 TC~~C~tRS~k~iSK-~AY~~G---vViVqC~GC~n~HLI 164 (211)
-|+.|++-=.--++- .--..| .|+++|-.|...+-+
T Consensus 67 ~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~ 106 (120)
T 1x0t_A 67 YCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRY 106 (120)
T ss_dssp BCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEE
T ss_pred hccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEE
Confidence 699998732211111 112223 699999999876654
No 60
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.25 E-value=19 Score=19.33 Aligned_cols=11 Identities=36% Similarity=0.969 Sum_probs=8.7
Q ss_pred EEcccCCCccc
Q 028299 128 FTCNVCGQRTT 138 (211)
Q Consensus 128 FTC~~C~tRS~ 138 (211)
|.|..|+..-.
T Consensus 10 ~~C~~C~k~f~ 20 (36)
T 2elq_A 10 FKCSLCEYATR 20 (36)
T ss_dssp EECSSSSCEES
T ss_pred ccCCCCCchhC
Confidence 89999987543
No 61
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.05 E-value=13 Score=23.18 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=24.8
Q ss_pred EEEcccCCCccc-cccCcccccCccEEEEcC-CCCccceee
Q 028299 127 AFTCNVCGQRTT-RAINPHAYTDGTVFVQCC-GCNVFHKLV 165 (211)
Q Consensus 127 ~FTC~~C~tRS~-k~iSK~AY~~GvViVqC~-GC~n~HLIA 165 (211)
.|.|..|+..-. ..+.+|....|-.-.+|+ .|.....-.
T Consensus 10 ~~~C~~C~k~f~~~~L~~H~~~~~~~p~~C~~~C~k~f~~~ 50 (66)
T 2eod_A 10 TQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVAR 50 (66)
T ss_dssp EEECSSSCCEEEHHHHHHHHHHCSSSEEECTTCCSCCEEET
T ss_pred CeeccccCCccCHHHHHHHHHHcCCcCccCCcccCcccccH
Confidence 489999997543 223333323677788999 998754433
No 62
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=29.97 E-value=20 Score=17.81 Aligned_cols=9 Identities=33% Similarity=1.372 Sum_probs=7.4
Q ss_pred EEcccCCCc
Q 028299 128 FTCNVCGQR 136 (211)
Q Consensus 128 FTC~~C~tR 136 (211)
|.|..|+..
T Consensus 4 ~~C~~C~~~ 12 (30)
T 2m0d_A 4 YQCDYCGRS 12 (30)
T ss_dssp EECTTTCCE
T ss_pred ccCCCCCcc
Confidence 789999865
No 63
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.90 E-value=29 Score=24.82 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=6.5
Q ss_pred EEEEcCCCCcccee
Q 028299 151 VFVQCCGCNVFHKL 164 (211)
Q Consensus 151 ViVqC~GC~n~HLI 164 (211)
+-|+|++|.|.-.|
T Consensus 14 m~VkCp~C~~~q~V 27 (63)
T 3j20_W 14 LRVKCIDCGNEQIV 27 (63)
T ss_dssp EEEECSSSCCEEEE
T ss_pred EEEECCCCCCeeEE
Confidence 34445555444444
No 64
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=29.67 E-value=13 Score=18.60 Aligned_cols=10 Identities=40% Similarity=1.062 Sum_probs=7.5
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+..-
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 7899998653
No 65
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.62 E-value=20 Score=19.27 Aligned_cols=11 Identities=36% Similarity=0.884 Sum_probs=8.7
Q ss_pred EEEcccCCCcc
Q 028299 127 AFTCNVCGQRT 137 (211)
Q Consensus 127 ~FTC~~C~tRS 137 (211)
.|.|..|+..-
T Consensus 9 ~~~C~~C~k~f 19 (36)
T 2els_A 9 IFTCEYCNKVF 19 (36)
T ss_dssp CEECTTTCCEE
T ss_pred CEECCCCCcee
Confidence 38999998753
No 66
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.46 E-value=21 Score=19.19 Aligned_cols=11 Identities=18% Similarity=0.981 Sum_probs=8.5
Q ss_pred EEEcccCCCcc
Q 028299 127 AFTCNVCGQRT 137 (211)
Q Consensus 127 ~FTC~~C~tRS 137 (211)
.|.|..|+..-
T Consensus 9 ~~~C~~C~k~f 19 (36)
T 2elv_A 9 LYDCHICERKF 19 (36)
T ss_dssp CEECSSSCCEE
T ss_pred CeECCCCCCcc
Confidence 38999998643
No 67
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=28.94 E-value=17 Score=27.64 Aligned_cols=30 Identities=20% Similarity=0.668 Sum_probs=22.3
Q ss_pred eEEEEEcccCCCccccccCcccccCccEEEEcCCCCc
Q 028299 124 MRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNV 160 (211)
Q Consensus 124 ~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n 160 (211)
+...|||..|+....+. .++=|-+|..|..
T Consensus 33 q~~ky~CpfCgk~~vkR-------~a~GIW~C~~C~~ 62 (92)
T 3izc_m 33 QHARYDCSFCGKKTVKR-------GAAGIWTCSCCKK 62 (92)
T ss_dssp HHSCCCCSSSCSSCCEE-------EETTEEECTTTCC
T ss_pred HhcCCcCCCCCCceeee-------cccceEEcCCCCC
Confidence 34568999999776544 3466889999975
No 68
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=28.29 E-value=14 Score=27.50 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=21.4
Q ss_pred ceEEEEEcccCCCccccccCcccccCccEEE-EcCCCCccc
Q 028299 123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFV-QCCGCNVFH 162 (211)
Q Consensus 123 ~~~l~FTC~~C~tRS~k~iSK~AY~~GvViV-qC~GC~n~H 162 (211)
..-+.|.|..||+.-.. ..+ .. +||.|....
T Consensus 69 ~~p~~~~C~~CG~~~e~----~~~-----~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKP----NAL-----DYGVCEKCHSKN 100 (119)
T ss_dssp EECCEEECSSSSCEECS----CCS-----TTCCCSSSSSCC
T ss_pred eccceEEcCCCCCEEeC----CCC-----CCCcCccccCCC
Confidence 44568999999987543 111 34 799998763
No 69
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.00 E-value=22 Score=18.88 Aligned_cols=11 Identities=18% Similarity=0.779 Sum_probs=8.6
Q ss_pred EEEcccCCCcc
Q 028299 127 AFTCNVCGQRT 137 (211)
Q Consensus 127 ~FTC~~C~tRS 137 (211)
.|.|..|+..-
T Consensus 9 ~~~C~~C~k~f 19 (36)
T 2elt_A 9 PYKCPQCSYAS 19 (36)
T ss_dssp SEECSSSSCEE
T ss_pred CCCCCCCCccc
Confidence 38999998753
No 70
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.92 E-value=22 Score=19.18 Aligned_cols=11 Identities=27% Similarity=0.564 Sum_probs=8.6
Q ss_pred EEEcccCCCcc
Q 028299 127 AFTCNVCGQRT 137 (211)
Q Consensus 127 ~FTC~~C~tRS 137 (211)
.|.|..|+..-
T Consensus 9 ~~~C~~C~k~f 19 (37)
T 2elp_A 9 AMKCPYCDFYF 19 (37)
T ss_dssp CEECSSSSCEE
T ss_pred CeECCCCChhh
Confidence 38999998753
No 71
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=27.84 E-value=30 Score=30.89 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=26.3
Q ss_pred ceEEEEEcccCCCccccccCcccccCccEEEEcCCCCccceeee
Q 028299 123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVD 166 (211)
Q Consensus 123 ~~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIAD 166 (211)
++-+.|-|..|+.+.... .. ..+-.+|+.|...+.|+=
T Consensus 240 ~~g~v~~C~~C~~~~~~~----~~--~~~~~~C~~cg~~~~~~G 277 (392)
T 3axs_A 240 QFGYIQYCFNCMNREVVT----DL--YKFKEKCPHCGSKFHIGG 277 (392)
T ss_dssp TEEEEEECTTTCCEEEEC----CG--GGCCSBCTTTCSBCEEEE
T ss_pred hcceEEECCCCCCeEeec----CC--CCCCCcCCCCCCccceec
Confidence 578889999999887621 00 124467999998776654
No 72
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=27.63 E-value=31 Score=25.77 Aligned_cols=16 Identities=19% Similarity=0.567 Sum_probs=7.7
Q ss_pred EEEEcCCCCccceeee
Q 028299 151 VFVQCCGCNVFHKLVD 166 (211)
Q Consensus 151 ViVqC~GC~n~HLIAD 166 (211)
+-|+|+||.|.-.|-+
T Consensus 31 m~VkCp~C~n~q~VFS 46 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFS 46 (81)
T ss_dssp EEEECSSSCCEEEEET
T ss_pred EEeECCCCCCeeEEEe
Confidence 4455555555444433
No 73
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=27.22 E-value=23 Score=19.53 Aligned_cols=9 Identities=33% Similarity=1.198 Sum_probs=7.7
Q ss_pred EEcccCCCc
Q 028299 128 FTCNVCGQR 136 (211)
Q Consensus 128 FTC~~C~tR 136 (211)
|.|..|+..
T Consensus 7 ~~C~~C~k~ 15 (39)
T 1njq_A 7 YTCSFCKRE 15 (39)
T ss_dssp EECTTTCCE
T ss_pred eECCCCCcc
Confidence 899999875
No 74
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.21 E-value=23 Score=19.45 Aligned_cols=12 Identities=17% Similarity=0.611 Sum_probs=9.3
Q ss_pred EEEcccCCCccc
Q 028299 127 AFTCNVCGQRTT 138 (211)
Q Consensus 127 ~FTC~~C~tRS~ 138 (211)
.|.|..|+..-.
T Consensus 9 ~~~C~~C~k~f~ 20 (37)
T 2elm_A 9 LYYCSQCHYSSI 20 (37)
T ss_dssp EEECSSSSCEEE
T ss_pred CeECCCCCcccC
Confidence 399999997643
No 75
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=27.06 E-value=34 Score=31.44 Aligned_cols=21 Identities=29% Similarity=0.592 Sum_probs=13.2
Q ss_pred cceEEEEEcccCCCccccccC
Q 028299 122 RRMRVAFTCNVCGQRTTRAIN 142 (211)
Q Consensus 122 r~~~l~FTC~~C~tRS~k~iS 142 (211)
.-+.+.|.|..||.|+.-..+
T Consensus 244 eViims~~C~~CGyr~neVk~ 264 (404)
T 2qkd_A 244 EVIIMATNCENCGHRTNEVKS 264 (404)
T ss_dssp CEEEEEEECSSSCCEEEEEEE
T ss_pred cEEEEEEECCCCCCcccceee
Confidence 356777777777777654433
No 76
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.02 E-value=24 Score=20.10 Aligned_cols=11 Identities=36% Similarity=1.075 Sum_probs=8.7
Q ss_pred EEEcccCCCcc
Q 028299 127 AFTCNVCGQRT 137 (211)
Q Consensus 127 ~FTC~~C~tRS 137 (211)
.|.|..|+.+-
T Consensus 12 ~~~C~~C~k~F 22 (44)
T 2epv_A 12 PYECNECGKAF 22 (44)
T ss_dssp SEECSSSCCEE
T ss_pred CeECCCCCccc
Confidence 38999998753
No 77
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=27.01 E-value=34 Score=24.68 Aligned_cols=17 Identities=29% Similarity=0.555 Sum_probs=11.4
Q ss_pred EEEEcCCCCccceeeec
Q 028299 151 VFVQCCGCNVFHKLVDN 167 (211)
Q Consensus 151 ViVqC~GC~n~HLIADN 167 (211)
+-|+|++|.|.-.|=+|
T Consensus 6 m~VKCp~C~niq~VFSh 22 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDH 22 (66)
T ss_dssp EEEECTTTCCEEEEESS
T ss_pred EEEECCCCCCceEEEec
Confidence 56777777776666554
No 78
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=26.95 E-value=14 Score=18.41 Aligned_cols=10 Identities=30% Similarity=1.016 Sum_probs=7.5
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1klr_A 3 YQCQYCEFRS 12 (30)
T ss_dssp CCCSSSSCCC
T ss_pred ccCCCCCCcc
Confidence 6788888653
No 79
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=26.20 E-value=14 Score=28.43 Aligned_cols=32 Identities=16% Similarity=0.434 Sum_probs=22.0
Q ss_pred CcceEEEEEcccCCCccccccCcccccCccEEEEcCCCCcc
Q 028299 121 RRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVF 161 (211)
Q Consensus 121 rr~~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~ 161 (211)
+....-.|.|..|++.-... .. ...||.|.+.
T Consensus 126 ~~~~~~~y~C~~Cg~~~~~~------~~---~~~Cp~CG~~ 157 (165)
T 2lcq_A 126 KKVIKWRYVCIGCGRKFSTL------PP---GGVCPDCGSK 157 (165)
T ss_dssp SSCCCCCEEESSSCCEESSC------CG---GGBCTTTCCB
T ss_pred cccccEEEECCCCCCcccCC------CC---CCcCCCCCCc
Confidence 34455569999999876543 11 1379999986
No 80
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.20 E-value=32 Score=23.85 Aligned_cols=18 Identities=22% Similarity=0.647 Sum_probs=13.5
Q ss_pred ccCccEEEEcCCCCcc-ce
Q 028299 146 YTDGTVFVQCCGCNVF-HK 163 (211)
Q Consensus 146 Y~~GvViVqC~GC~n~-HL 163 (211)
|..+...|||..|..| |.
T Consensus 21 ~d~~~~MIqCd~C~~WfH~ 39 (79)
T 1wep_A 21 YNVNHFMIECGLCQDWFHG 39 (79)
T ss_dssp CCSSSCEEEBTTTCCEEEH
T ss_pred cCCCCceEEcCCCCCcEEe
Confidence 4446678999999887 54
No 81
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=26.19 E-value=20 Score=27.77 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=22.4
Q ss_pred eEEEEEcccCCCcccccc-----C---cccc----cCccEEEEcCCCCccce
Q 028299 124 MRVAFTCNVCGQRTTRAI-----N---PHAY----TDGTVFVQCCGCNVFHK 163 (211)
Q Consensus 124 ~~l~FTC~~C~tRS~k~i-----S---K~AY----~~GvViVqC~GC~n~HL 163 (211)
.-..+.|..||..-.-.- . ++++ +-.....+||.|....+
T Consensus 67 ~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 67 EEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp ECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred cCCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCcc
Confidence 345799999998643211 0 0010 01112468999998754
No 82
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=26.04 E-value=27 Score=25.87 Aligned_cols=25 Identities=20% Similarity=0.691 Sum_probs=16.9
Q ss_pred EEcccCCCccccccCcccccCccEEEEcC-CCCcc
Q 028299 128 FTCNVCGQRTTRAINPHAYTDGTVFVQCC-GCNVF 161 (211)
Q Consensus 128 FTC~~C~tRS~k~iSK~AY~~GvViVqC~-GC~n~ 161 (211)
|.|.+|... |...--+|+|. +|+.|
T Consensus 4 ~~C~iC~~p---------~~~~~~mi~Cdd~C~~W 29 (105)
T 2xb1_A 4 YPCGACRSE---------VNDDQDAILCEASCQKW 29 (105)
T ss_dssp CBCTTTCSB---------CCTTSCEEECTTTTCCE
T ss_pred CCCCCCCCc---------cCCCCCEEEecCCcccc
Confidence 678888653 43444589998 99754
No 83
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.88 E-value=16 Score=19.76 Aligned_cols=10 Identities=30% Similarity=1.012 Sum_probs=8.2
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 10 ~~C~~C~k~f 19 (37)
T 2elo_A 10 YSCPVCEKSF 19 (37)
T ss_dssp CEETTTTEEC
T ss_pred cCCCCCCCcc
Confidence 8999998753
No 84
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=25.82 E-value=25 Score=31.42 Aligned_cols=47 Identities=19% Similarity=0.304 Sum_probs=28.0
Q ss_pred EEEEcccCCCcccc-ccCccccc-CccEEEEcCCCCccceeeecccccccC
Q 028299 126 VAFTCNVCGQRTTR-AINPHAYT-DGTVFVQCCGCNVFHKLVDNLNLFHEM 174 (211)
Q Consensus 126 l~FTC~~C~tRS~k-~iSK~AY~-~GvViVqC~GC~n~HLIADNLgwF~e~ 174 (211)
-.+.|..|+.+-.. .+-+.... ..-.+-+|+.|.. ++-.|.=||+|.
T Consensus 143 ~~~~C~~C~~~~~~~~~~~~~~~~~~~~~P~Cp~Cgg--~lrP~VV~FGE~ 191 (361)
T 1q14_A 143 AHCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGE--LVKPAIVFFGED 191 (361)
T ss_dssp EEEEETTTCCEECTHHHHHHTTSSSCSCCCBCTTTCC--BEEEEECCBTSC
T ss_pred cccCcCCCCccCcHHHHHHHHhhcccCCCCCCcCCCC--EeCCCccccccc
Confidence 35679999864221 11000000 1113579999984 788999999985
No 85
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=25.59 E-value=40 Score=26.36 Aligned_cols=48 Identities=27% Similarity=0.553 Sum_probs=33.2
Q ss_pred CCcceEEEEE-cccCCCccccccCcccc--cCccEEE----EcCCCCccceeeeccc
Q 028299 120 PRRRMRVAFT-CNVCGQRTTRAINPHAY--TDGTVFV----QCCGCNVFHKLVDNLN 169 (211)
Q Consensus 120 prr~~~l~FT-C~~C~tRS~k~iSK~AY--~~GvViV----qC~GC~n~HLIADNLg 169 (211)
..+.|+|-|. |..|+.|....++.++- +.|-=+| -|+.|. |+||-|==
T Consensus 18 e~Gsyl~Nf~gC~~C~~~~~~~v~nk~~~eedgeEiity~H~C~nC~--HvIA~HeY 72 (106)
T 2jox_A 18 ENGSFLLNFTGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCH--HVIARHEY 72 (106)
T ss_dssp SSCCCTTTBCCCSSSCCSSCEEEEEEEEEEETTEEEEEEEEEETTTC--CEEEEEEE
T ss_pred cCcceeeechhhhhcCCCceEEEeccccccCCCcEEEEEEEecCCCc--eEeeeeeE
Confidence 3467888886 77999999777765543 2343333 499886 99998743
No 86
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.45 E-value=15 Score=18.64 Aligned_cols=9 Identities=33% Similarity=1.076 Sum_probs=7.3
Q ss_pred EEcccCCCc
Q 028299 128 FTCNVCGQR 136 (211)
Q Consensus 128 FTC~~C~tR 136 (211)
|.|..|+..
T Consensus 3 ~~C~~C~k~ 11 (29)
T 2lvt_A 3 CQCVMCGKA 11 (29)
Confidence 789999865
No 87
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=25.29 E-value=29 Score=28.67 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=31.7
Q ss_pred EcccCCCccccccCcccccCccEEEEcCCCCccceeeecccc
Q 028299 129 TCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKLVDNLNL 170 (211)
Q Consensus 129 TC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLIADNLgw 170 (211)
+|..|+...+..+-.. +.++.+.+|..|....-+.=+.++
T Consensus 98 lC~~C~sPdT~L~k~~--~~r~~~l~C~ACGa~~~V~~~~kl 137 (170)
T 2g2k_A 98 LCPECENPETDLHVNP--KKQTIGNSCKACGYRGMLDTHHKL 137 (170)
T ss_dssp SCTTTSSSCEEEEEET--TTTEEEEEETTTCCCCCSCSSSSH
T ss_pred ECCCCCCCccEEEEec--CCCEEEEEccccCCccccccccce
Confidence 7999999998876421 479999999999998888655554
No 88
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=25.10 E-value=9.2 Score=34.06 Aligned_cols=27 Identities=33% Similarity=0.939 Sum_probs=19.9
Q ss_pred EEcccCCCccccccCcccccCccEEEEcCCCCccc
Q 028299 128 FTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFH 162 (211)
Q Consensus 128 FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~H 162 (211)
-.|.+||.+. +.||.||. .|.||+...
T Consensus 51 ~~C~vC~~~~------~g~hygv~--~C~~C~~FF 77 (419)
T 3dzy_D 51 IECRVCGDKA------SGFHYGVH--ACEGCKGFF 77 (419)
T ss_dssp CCCSSSCSCC------CSBCSSSB--CCHHHHHHH
T ss_pred CcCeECCCcC------CCCccCcc--cchhhhHHH
Confidence 3599999864 46888875 788887544
No 89
>2kwq_A Protein MCM10 homolog; DNA replication, DNA binding, zinc motif, zinc ribbon binding protein; NMR {Xenopus laevis}
Probab=24.73 E-value=45 Score=25.06 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=27.9
Q ss_pred ceEEEEEcccCCCcccccc-----CcccccCccE---EEEcCCCCccceeeecc
Q 028299 123 RMRVAFTCNVCGQRTTRAI-----NPHAYTDGTV---FVQCCGCNVFHKLVDNL 168 (211)
Q Consensus 123 ~~~l~FTC~~C~tRS~k~i-----SK~AY~~GvV---iVqC~GC~n~HLIADNL 168 (211)
--.=+|+|..|+....+.- .+|.|+.=-+ |-+|+ |.+++.-.|.|
T Consensus 11 ~~~~av~C~~C~yt~~~~~~~C~~~~H~l~~~~a~KRFFkC~-C~~Rt~sl~r~ 63 (92)
T 2kwq_A 11 QSCRVVTCKTCKYTHFKPKETCVSENHDFHWHNGVKRFFKCP-CGNRTISLDRL 63 (92)
T ss_dssp CEEEEEEETTTCCEESSCCHHHHHTTCCEEEEEEECEEEECT-TSCEEEESSSS
T ss_pred EeEEEEEccCCcceecCcchhHHhcCCceEEEeeeEEEEECC-CCCceeEeeeC
Confidence 3455799999995444322 2344432222 56896 99999887654
No 90
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=24.66 E-value=8.8 Score=34.87 Aligned_cols=27 Identities=33% Similarity=0.871 Sum_probs=20.2
Q ss_pred EEcccCCCccccccCcccccCccEEEEcCCCCccc
Q 028299 128 FTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFH 162 (211)
Q Consensus 128 FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~H 162 (211)
-.|.+||.+. ..||-||+ .|.||+..+
T Consensus 138 ~~C~VCg~~a------~g~hygv~--sC~~Ck~FF 164 (467)
T 3dzy_A 138 HICAICGDRS------SGKHYGVY--SCEGCKGFF 164 (467)
T ss_dssp EECTTTSSEE------CSEETTEE--CCHHHHHHH
T ss_pred CcceeCCCCC------CCCcCCCc--chhhhhHhc
Confidence 3599999874 46889965 699997543
No 91
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=24.61 E-value=21 Score=30.26 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=27.7
Q ss_pred EEEcccCCCcccc-ccCcccc--cCccEEEEcCCCCccceeeecccccccC
Q 028299 127 AFTCNVCGQRTTR-AINPHAY--TDGTVFVQCCGCNVFHKLVDNLNLFHEM 174 (211)
Q Consensus 127 ~FTC~~C~tRS~k-~iSK~AY--~~GvViVqC~GC~n~HLIADNLgwF~e~ 174 (211)
...|..|+.+-.. .+-+... ..+ .+-+|+.|. .++-.|.=||+|.
T Consensus 136 ~~~C~~C~~~~~~~~~~~~~~~~~~~-~~P~C~~Cg--g~lrP~vv~FGE~ 183 (289)
T 1q1a_A 136 HCHCIGCGKVYPPQVFKSKLAEHPIK-DFVKCDVCG--ELVKPAIVFFGED 183 (289)
T ss_dssp EEEETTTCCEECHHHHHHHHTCSSCC-SCCBCTTTC--CBEEEEECCBTSB
T ss_pred ceEECCCCCCCcHHHHHHHHhhccCC-CCccCCCCC--CEECCCEEEcCCC
Confidence 5679999764321 1100000 112 357999998 4788999999984
No 92
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=24.39 E-value=37 Score=23.10 Aligned_cols=24 Identities=29% Similarity=0.764 Sum_probs=17.7
Q ss_pred EEcccCCCccccccCcccccCccEEEEcCCCCc
Q 028299 128 FTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNV 160 (211)
Q Consensus 128 FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n 160 (211)
=+|.+|+.+-. |-|++| +|..|..
T Consensus 20 ~~C~~Cg~~i~--~gkq~~-------kC~dC~~ 43 (61)
T 4b6d_A 20 ESCVPCGKRIK--FGKLSL-------KCRDCRV 43 (61)
T ss_dssp EECTTTCCEEC--TTCEEE-------EESSSSC
T ss_pred cccccccCEEE--EeeEee-------ECCCCCC
Confidence 37999988762 777776 6888764
No 93
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.35 E-value=17 Score=17.91 Aligned_cols=9 Identities=22% Similarity=0.903 Sum_probs=6.9
Q ss_pred EEcccCCCc
Q 028299 128 FTCNVCGQR 136 (211)
Q Consensus 128 FTC~~C~tR 136 (211)
|.|..|+..
T Consensus 3 ~~C~~C~~~ 11 (29)
T 2m0e_A 3 HKCPHCDKK 11 (29)
T ss_dssp CCCSSCCCC
T ss_pred CcCCCCCcc
Confidence 678888864
No 94
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=24.15 E-value=43 Score=25.05 Aligned_cols=17 Identities=24% Similarity=0.547 Sum_probs=9.3
Q ss_pred EEEEcCCCCccceeeec
Q 028299 151 VFVQCCGCNVFHKLVDN 167 (211)
Q Consensus 151 ViVqC~GC~n~HLIADN 167 (211)
+-|+|++|.|.-.|=.|
T Consensus 33 m~VkCp~C~~~q~VFSh 49 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSH 49 (82)
T ss_dssp EEEECTTSCSCEEEESB
T ss_pred EEEECCCCCCeeEEEec
Confidence 45566666665555443
No 95
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=24.10 E-value=45 Score=23.61 Aligned_cols=12 Identities=17% Similarity=0.537 Sum_probs=9.0
Q ss_pred EEEEcccCCCcc
Q 028299 126 VAFTCNVCGQRT 137 (211)
Q Consensus 126 l~FTC~~C~tRS 137 (211)
+.++|-.|+..+
T Consensus 4 ~~~~c~~c~~~n 15 (148)
T 3p2a_A 4 MNTVCTACMATN 15 (148)
T ss_dssp EEEECTTTCCEE
T ss_pred cEEECccccccc
Confidence 577888888865
No 96
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=23.92 E-value=17 Score=18.40 Aligned_cols=9 Identities=22% Similarity=1.191 Sum_probs=7.0
Q ss_pred EEcccCCCc
Q 028299 128 FTCNVCGQR 136 (211)
Q Consensus 128 FTC~~C~tR 136 (211)
|.|..|+..
T Consensus 3 ~~C~~C~k~ 11 (30)
T 1paa_A 3 YACGLCNRA 11 (30)
T ss_dssp SBCTTTCCB
T ss_pred cCCcccCcc
Confidence 678888864
No 97
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=23.75 E-value=28 Score=20.63 Aligned_cols=10 Identities=40% Similarity=1.494 Sum_probs=8.1
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+..-
T Consensus 8 ~~C~~C~k~F 17 (48)
T 3iuf_A 8 YACDICGKRY 17 (48)
T ss_dssp EECTTTCCEE
T ss_pred EECCCcCccc
Confidence 8999999653
No 98
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=23.31 E-value=19 Score=19.38 Aligned_cols=10 Identities=30% Similarity=0.846 Sum_probs=8.1
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+..-
T Consensus 12 ~~C~~C~k~f 21 (37)
T 1p7a_A 12 FQCPDCDRSF 21 (37)
T ss_dssp BCCTTTCCCB
T ss_pred ccCCCCCccc
Confidence 8899998653
No 99
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=29.01 E-value=17 Score=18.24 Aligned_cols=10 Identities=20% Similarity=0.853 Sum_probs=7.8
Q ss_pred EEEcccCCCc
Q 028299 127 AFTCNVCGQR 136 (211)
Q Consensus 127 ~FTC~~C~tR 136 (211)
.|.|..|+..
T Consensus 3 ~~~C~~C~k~ 12 (30)
T 2lvr_A 3 PYVCIHCQRQ 12 (30)
Confidence 3889999865
No 100
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.23 E-value=30 Score=19.17 Aligned_cols=10 Identities=40% Similarity=1.265 Sum_probs=8.4
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 12 ~~C~~C~k~f 21 (42)
T 2en2_A 12 YKCETCGARF 21 (42)
T ss_dssp EECTTTCCEE
T ss_pred EeCCCcChhh
Confidence 8999999754
No 101
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=22.98 E-value=15 Score=19.62 Aligned_cols=9 Identities=44% Similarity=1.272 Sum_probs=7.1
Q ss_pred EEcccCCCc
Q 028299 128 FTCNVCGQR 136 (211)
Q Consensus 128 FTC~~C~tR 136 (211)
|.|..|+.+
T Consensus 3 ~~C~~C~k~ 11 (32)
T 2kfq_A 3 FACPACPKR 11 (32)
T ss_dssp SSSSSSCTT
T ss_pred CCCCCCCcc
Confidence 678888865
No 102
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.78 E-value=20 Score=19.03 Aligned_cols=10 Identities=30% Similarity=1.132 Sum_probs=8.0
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+..-
T Consensus 10 ~~C~~C~k~f 19 (36)
T 2elr_A 10 HLCDMCGKKF 19 (36)
T ss_dssp CBCTTTCCBC
T ss_pred eecCcCCCCc
Confidence 8899998653
No 103
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=22.64 E-value=39 Score=23.22 Aligned_cols=26 Identities=19% Similarity=0.709 Sum_probs=19.3
Q ss_pred EEEcccCCCccccccCcccccCccEEEEcC-CCCcc
Q 028299 127 AFTCNVCGQRTTRAINPHAYTDGTVFVQCC-GCNVF 161 (211)
Q Consensus 127 ~FTC~~C~tRS~k~iSK~AY~~GvViVqC~-GC~n~ 161 (211)
.+.|.+|... |..+.-.|+|. +|+.|
T Consensus 8 ~~~C~~C~~p---------~~~~~~mI~CD~~C~~W 34 (65)
T 2vpb_A 8 VYPCGICTNE---------VNDDQDAILCEASCQKW 34 (65)
T ss_dssp -CBCTTTCSB---------CCTTSCEEEBTTTTCCE
T ss_pred cCcCccCCCc---------cCCCCCeEecccCcccc
Confidence 3568888654 66678899999 99864
No 104
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.58 E-value=13 Score=23.31 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=24.6
Q ss_pred EEcccCCCccc--cccCcc-cccCccEEEEcCCCCccceeeec
Q 028299 128 FTCNVCGQRTT--RAINPH-AYTDGTVFVQCCGCNVFHKLVDN 167 (211)
Q Consensus 128 FTC~~C~tRS~--k~iSK~-AY~~GvViVqC~GC~n~HLIADN 167 (211)
|.|..|+..-. ..+.+| ..+.|.-..+|+-|.....-.++
T Consensus 10 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~ 52 (70)
T 1x5w_A 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSN 52 (70)
T ss_dssp EECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHH
T ss_pred eECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHH
Confidence 89999997533 223232 23456656799999875443333
No 105
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.51 E-value=32 Score=19.60 Aligned_cols=10 Identities=40% Similarity=1.016 Sum_probs=8.3
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2eoy_A 13 FKCNKCEKTF 22 (46)
T ss_dssp EECSSSCCEE
T ss_pred EECcCCCCcC
Confidence 8999999753
No 106
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.50 E-value=32 Score=19.60 Aligned_cols=11 Identities=27% Similarity=0.996 Sum_probs=8.8
Q ss_pred EEcccCCCccc
Q 028299 128 FTCNVCGQRTT 138 (211)
Q Consensus 128 FTC~~C~tRS~ 138 (211)
|.|..|+..-.
T Consensus 13 ~~C~~C~k~F~ 23 (46)
T 2ytp_A 13 YECSECGKAFA 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCcCCcccC
Confidence 89999997533
No 107
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=22.41 E-value=32 Score=19.64 Aligned_cols=10 Identities=40% Similarity=1.112 Sum_probs=8.3
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 13 ~~C~~C~k~F 22 (46)
T 2emj_A 13 FECAECGKSF 22 (46)
T ss_dssp EECSSSSCEE
T ss_pred EECCCCCccc
Confidence 8999998753
No 108
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=22.37 E-value=37 Score=23.12 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=14.6
Q ss_pred cEEEEcCCCCccce---eeeccccc
Q 028299 150 TVFVQCCGCNVFHK---LVDNLNLF 171 (211)
Q Consensus 150 vViVqC~GC~n~HL---IADNLgwF 171 (211)
..++.|+.|...|+ +-.+ |.|
T Consensus 25 p~l~~c~~cGe~~l~H~vc~~-G~Y 48 (56)
T 3r8s_0 25 TSLSVDKTSGEKHLRHHITAD-GYY 48 (56)
T ss_dssp CCEEECTTTCCEEETTBCCTT-SEE
T ss_pred CceeECCCCCCeecccEECCC-CeE
Confidence 34899999998643 4445 655
No 109
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.08 E-value=33 Score=19.45 Aligned_cols=10 Identities=30% Similarity=1.075 Sum_probs=8.4
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+..-
T Consensus 13 ~~C~~C~k~F 22 (46)
T 2emi_A 13 YECSECGKAF 22 (46)
T ss_dssp EECSSSCCEE
T ss_pred CCCCCCCccc
Confidence 9999999753
No 110
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=21.97 E-value=31 Score=28.97 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=10.1
Q ss_pred EEEcccCCCccccccCc
Q 028299 127 AFTCNVCGQRTTRAINP 143 (211)
Q Consensus 127 ~FTC~~C~tRS~k~iSK 143 (211)
...|..|+......++.
T Consensus 125 ~~~C~~C~~~~yp~~~~ 141 (269)
T 1vk6_A 125 AMLCSHCRERYYPQIAP 141 (269)
T ss_dssp CEEESSSSCEECCCCEE
T ss_pred eeeCCCCCCEecCCCCc
Confidence 34677777665544443
No 111
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=21.96 E-value=45 Score=25.14 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=11.4
Q ss_pred cEEEEcCCCCccceeeecc
Q 028299 150 TVFVQCCGCNVFHKLVDNL 168 (211)
Q Consensus 150 vViVqC~GC~n~HLIADNL 168 (211)
-+-|+|++|.+.-.|-.|-
T Consensus 34 Fm~VkCp~C~~~~~VFShA 52 (86)
T 3iz6_X 34 FMDVKCQGCFNITTVFSHS 52 (86)
T ss_dssp EEEEECTTTCCEEEEETTC
T ss_pred EeEEECCCCCCeeEEEecC
Confidence 3556777777666665543
No 112
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=21.95 E-value=48 Score=29.08 Aligned_cols=30 Identities=20% Similarity=0.532 Sum_probs=19.8
Q ss_pred EcccCCCcccc-ccCcccccCccEEEEcCCCCccc
Q 028299 129 TCNVCGQRTTR-AINPHAYTDGTVFVQCCGCNVFH 162 (211)
Q Consensus 129 TC~~C~tRS~k-~iSK~AY~~GvViVqC~GC~n~H 162 (211)
.|..|++.-.+ .+. ..|=...-||.|+.+|
T Consensus 253 pC~~CGt~I~~~~~g----~~gRsTyfCp~~~~~~ 283 (287)
T 3w0f_A 253 NCDQCHSKITVCRFG----ENSRMTYFCPHCQKHH 283 (287)
T ss_dssp BCTTTCCBCEEECSS----TTCCCEEECTTTSCC-
T ss_pred CCCCCCCEEEEEEec----CCCCCEEECCCccccc
Confidence 79999986654 232 1234445699999988
No 113
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.91 E-value=34 Score=19.33 Aligned_cols=10 Identities=40% Similarity=1.168 Sum_probs=8.4
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+..-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2yts_A 13 YICNECGKSF 22 (46)
T ss_dssp EECSSSCCEE
T ss_pred EECCCCChhh
Confidence 8999999753
No 114
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.81 E-value=20 Score=24.46 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=22.2
Q ss_pred ceEEEEEcccCCCccccccCcccccCccEEEEcCCCCccce
Q 028299 123 RMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHK 163 (211)
Q Consensus 123 ~~~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HL 163 (211)
++.-...|..|+.+ .++=+.+|..|....|
T Consensus 10 r~~~k~iCpkC~a~-----------~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 10 RIFKKYVCLRCGAT-----------NPWGAKKCRKCGYKRL 39 (51)
T ss_dssp HSSSEEECTTTCCE-----------ECTTCSSCSSSSSCCC
T ss_pred HHhCCccCCCCCCc-----------CCCCceecCCCCCccc
Confidence 34456789999998 4566778999986644
No 115
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.74 E-value=34 Score=19.48 Aligned_cols=11 Identities=36% Similarity=1.032 Sum_probs=8.9
Q ss_pred EEcccCCCccc
Q 028299 128 FTCNVCGQRTT 138 (211)
Q Consensus 128 FTC~~C~tRS~ 138 (211)
|.|..|+.+-.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2em2_A 13 FKCKECGKAFR 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred EECCcCCchhC
Confidence 89999997643
No 116
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=21.65 E-value=49 Score=26.50 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=18.5
Q ss_pred EEEEEcccCCCccccccCcccccCccEEEEcCCCCcc
Q 028299 125 RVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVF 161 (211)
Q Consensus 125 ~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~ 161 (211)
...|.|.+||.--.-. -+--.||-|...
T Consensus 153 ~~~~~C~~CG~~~~g~---------~~p~~CP~C~~~ 180 (191)
T 1lko_A 153 ATKWRCRNCGYVHEGT---------GAPELCPACAHP 180 (191)
T ss_dssp EEEEEETTTCCEEEEE---------ECCSBCTTTCCB
T ss_pred CceEEECCCCCEeeCC---------CCCCCCCCCcCC
Confidence 4589999999863311 111189999874
No 117
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.63 E-value=34 Score=19.29 Aligned_cols=11 Identities=27% Similarity=0.978 Sum_probs=8.8
Q ss_pred EEcccCCCccc
Q 028299 128 FTCNVCGQRTT 138 (211)
Q Consensus 128 FTC~~C~tRS~ 138 (211)
|.|..|+.+-.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2yrj_A 13 YRCGECGKAFA 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCCccC
Confidence 89999997643
No 118
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=21.42 E-value=35 Score=18.85 Aligned_cols=10 Identities=30% Similarity=1.075 Sum_probs=8.3
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+..-
T Consensus 11 ~~C~~C~k~f 20 (42)
T 2el5_A 11 YECSECGKAF 20 (42)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCcChhh
Confidence 8999998753
No 119
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.37 E-value=35 Score=19.43 Aligned_cols=10 Identities=30% Similarity=0.952 Sum_probs=8.3
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2em4_A 13 YECIECGKAF 22 (46)
T ss_dssp EECSSSCCEE
T ss_pred cCCCCCCCcc
Confidence 8999998753
No 120
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=21.32 E-value=58 Score=28.12 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=27.3
Q ss_pred EEEcccCCCcccc--ccC-c-ccccCccEEEEcCCCCccceeeecccccccC
Q 028299 127 AFTCNVCGQRTTR--AIN-P-HAYTDGTVFVQCCGCNVFHKLVDNLNLFHEM 174 (211)
Q Consensus 127 ~FTC~~C~tRS~k--~iS-K-~AY~~GvViVqC~GC~n~HLIADNLgwF~e~ 174 (211)
...|..|+.+-.. .+. + ..+... .+-+|+ |. .+|-.+.=||+|.
T Consensus 154 ~~~C~~C~~~~~~~~~~~~~~~~~~~~-~~P~C~-Cg--g~lrPdVV~FGE~ 201 (290)
T 3u31_A 154 EAVCCTCNKIVKLNKIMLQKTSHFMHQ-LPPECP-CG--GIFKPNIILFGEV 201 (290)
T ss_dssp EEEETTTCCEEECCTGGGSTTSSTTTS-SSCBCT-TS--CBEEEEECCBTSB
T ss_pred cceeCCCCCcCChhHhhhccccccccc-CCCCCC-CC--CEECCeEEEcCCC
Confidence 4679999975321 110 0 112222 247899 97 5788999999985
No 121
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.29 E-value=35 Score=19.18 Aligned_cols=11 Identities=36% Similarity=0.884 Sum_probs=8.7
Q ss_pred EEcccCCCccc
Q 028299 128 FTCNVCGQRTT 138 (211)
Q Consensus 128 FTC~~C~tRS~ 138 (211)
|.|..|+.+-.
T Consensus 13 ~~C~~C~k~f~ 23 (44)
T 2yu5_A 13 FKCSKCDRVFT 23 (44)
T ss_dssp EECSSSSCEES
T ss_pred eECCCCCchhC
Confidence 89999987533
No 122
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=21.13 E-value=18 Score=25.64 Aligned_cols=32 Identities=25% Similarity=0.538 Sum_probs=23.3
Q ss_pred EEEEEcccCCCccccccCcccccCccEEEEcCCCCcccee
Q 028299 125 RVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGCNVFHKL 164 (211)
Q Consensus 125 ~l~FTC~~C~tRS~k~iSK~AY~~GvViVqC~GC~n~HLI 164 (211)
.+.|.|-.|+....-. . + --|+|+.|..+=|.
T Consensus 19 ~v~Y~C~~Cg~~~~l~----~---~-~~iRC~~CG~RILy 50 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQ----A---K-EVIRCRECGHRVMY 50 (63)
T ss_dssp CCCCBCSSSCCBCCCC----S---S-SCCCCSSSCCCCCB
T ss_pred CeEEECCCCCCeeecC----C---C-CceECCCCCcEEEE
Confidence 5789999999887632 1 2 23899999987554
No 123
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.10 E-value=36 Score=19.21 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=8.3
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+..-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2ytf_A 13 FECSECQKAF 22 (46)
T ss_dssp EECSSSCCEE
T ss_pred cCCCCCCccc
Confidence 8999999753
No 124
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=21.02 E-value=22 Score=19.17 Aligned_cols=10 Identities=40% Similarity=1.006 Sum_probs=7.5
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 3 ~~C~~C~k~F 12 (33)
T 1rim_A 3 FACPECPKRF 12 (33)
T ss_dssp CCCSSSCCCC
T ss_pred ccCCCCCchh
Confidence 6788888753
No 125
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.88 E-value=37 Score=18.75 Aligned_cols=11 Identities=27% Similarity=0.987 Sum_probs=8.6
Q ss_pred EEEcccCCCcc
Q 028299 127 AFTCNVCGQRT 137 (211)
Q Consensus 127 ~FTC~~C~tRS 137 (211)
.|.|..|+..-
T Consensus 10 ~~~C~~C~k~f 20 (41)
T 2ept_A 10 VYECQECGKSF 20 (41)
T ss_dssp CEECSSSCCEE
T ss_pred CeECCCCCCCc
Confidence 38999998753
No 126
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=20.82 E-value=37 Score=18.67 Aligned_cols=10 Identities=30% Similarity=1.046 Sum_probs=8.3
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 12 ~~C~~C~k~f 21 (42)
T 2epc_A 12 YLCGQCGKSF 21 (42)
T ss_dssp EECSSSCCEE
T ss_pred eECCCCCccc
Confidence 8999998754
No 127
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.70 E-value=37 Score=19.33 Aligned_cols=10 Identities=30% Similarity=1.049 Sum_probs=8.4
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2yto_A 13 YKCSDCGKAF 22 (46)
T ss_dssp EECSSSCCEE
T ss_pred EECcccCCcc
Confidence 9999999753
No 128
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.62 E-value=36 Score=18.92 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=8.3
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+..-
T Consensus 13 ~~C~~C~k~f 22 (44)
T 2eof_A 13 YECNECQKAF 22 (44)
T ss_dssp EECTTTCCEE
T ss_pred eECCCCCccc
Confidence 8999998753
No 129
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.53 E-value=37 Score=19.22 Aligned_cols=10 Identities=40% Similarity=1.085 Sum_probs=8.4
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+..-
T Consensus 13 ~~C~~C~k~F 22 (46)
T 2en3_A 13 FQCKECGMNF 22 (46)
T ss_dssp EECSSSCCEE
T ss_pred eeCcccChhh
Confidence 8999999753
No 130
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.36 E-value=15 Score=25.74 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=28.5
Q ss_pred EEcccCCCccc--cccCccc-ccCccEEEEcCCCCccceeeecc
Q 028299 128 FTCNVCGQRTT--RAINPHA-YTDGTVFVQCCGCNVFHKLVDNL 168 (211)
Q Consensus 128 FTC~~C~tRS~--k~iSK~A-Y~~GvViVqC~GC~n~HLIADNL 168 (211)
|+|.+|+..-. ..+.+|. -+.|.-.-+|+-|.....-.++|
T Consensus 29 h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L 72 (85)
T 2lv2_A 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGL 72 (85)
T ss_dssp EECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHH
T ss_pred EECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHH
Confidence 79999998533 3455554 45677778999999876555554
No 131
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.27 E-value=37 Score=19.15 Aligned_cols=10 Identities=30% Similarity=1.095 Sum_probs=8.3
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2eor_A 13 YNCEECGKAF 22 (46)
T ss_dssp EECTTTCCEE
T ss_pred ccCCCCCCCc
Confidence 8999998753
No 132
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.26 E-value=38 Score=19.17 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=8.8
Q ss_pred EEcccCCCccc
Q 028299 128 FTCNVCGQRTT 138 (211)
Q Consensus 128 FTC~~C~tRS~ 138 (211)
|.|..|+..-.
T Consensus 13 ~~C~~C~k~f~ 23 (46)
T 2ep3_A 13 YRCAECGKAFT 23 (46)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCchhC
Confidence 89999997543
No 133
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=20.23 E-value=48 Score=22.82 Aligned_cols=17 Identities=18% Similarity=0.632 Sum_probs=13.7
Q ss_pred cccCccEEEEcCCCCcc
Q 028299 145 AYTDGTVFVQCCGCNVF 161 (211)
Q Consensus 145 AY~~GvViVqC~GC~n~ 161 (211)
.|..+...|||..|..|
T Consensus 18 ~~~~~~~MI~Cd~C~~W 34 (75)
T 3kqi_A 18 PYDVTRFMIECDACKDW 34 (75)
T ss_dssp ECCTTSCEEECTTTCCE
T ss_pred cCCCCCCEEEcCCCCCC
Confidence 45557789999999987
No 134
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.20 E-value=31 Score=19.64 Aligned_cols=10 Identities=50% Similarity=1.401 Sum_probs=8.2
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+.+-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2eoz_A 13 YSCNVCGKAF 22 (46)
T ss_dssp EEETTTTEEE
T ss_pred eECcccChhh
Confidence 8999998653
No 135
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=20.16 E-value=31 Score=31.58 Aligned_cols=41 Identities=17% Similarity=0.299 Sum_probs=23.8
Q ss_pred EEEcCCCCc----cceeeecc--cccccCCCCcchhhhcCCCCcccc
Q 028299 152 FVQCCGCNV----FHKLVDNL--NLFHEMKCYVNPSFNYRDAKWDVG 192 (211)
Q Consensus 152 iVqC~GC~n----~HLIADNL--gwF~e~~~tIEdi~k~KGe~v~kg 192 (211)
-.+||-|.. ..|+.|.+ .+.......+++|.=...-.|...
T Consensus 288 ~W~CPIC~k~~~~~dL~ID~~~~~IL~~~~~dve~V~v~~DGsW~p~ 334 (371)
T 3i2d_A 288 TWQCPVCQIDIALENLAISEFVDDILQNCQKNVEQVELTSDGKWTAI 334 (371)
T ss_dssp CCBCTTTCCBCCGGGEEEBHHHHHHHTTSCTTCCEEEEETTSCEEEC
T ss_pred ceeCCCCCcccCHHHeeEcHHHHHHHHhccCCccEEEECCCCCEEec
Confidence 368898976 34666642 233444556666655555566554
No 136
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=20.05 E-value=37 Score=20.27 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=8.3
Q ss_pred EEEcccCCCc
Q 028299 127 AFTCNVCGQR 136 (211)
Q Consensus 127 ~FTC~~C~tR 136 (211)
.|.|..|+..
T Consensus 24 ~~~C~~C~k~ 33 (54)
T 1yui_A 24 PATCPICYAV 33 (54)
T ss_dssp CEECTTTCCE
T ss_pred CccCCCCCcc
Confidence 3899999975
No 137
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.04 E-value=38 Score=19.09 Aligned_cols=10 Identities=40% Similarity=1.178 Sum_probs=8.4
Q ss_pred EEcccCCCcc
Q 028299 128 FTCNVCGQRT 137 (211)
Q Consensus 128 FTC~~C~tRS 137 (211)
|.|..|+..-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2eow_A 13 YKCNECGKAF 22 (46)
T ss_dssp EECTTSCCEE
T ss_pred eeccccCChh
Confidence 8999999753
No 138
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.02 E-value=38 Score=19.00 Aligned_cols=11 Identities=18% Similarity=0.730 Sum_probs=8.7
Q ss_pred EEcccCCCccc
Q 028299 128 FTCNVCGQRTT 138 (211)
Q Consensus 128 FTC~~C~tRS~ 138 (211)
|.|..|+.+-.
T Consensus 13 ~~C~~C~k~f~ 23 (44)
T 2emb_A 13 YECSKCQATFN 23 (44)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCCccC
Confidence 89999997543
Done!