BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028300
(211 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 116/172 (67%), Gaps = 3/172 (1%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ KIL+IG+SGVGK TIGVDFK+K ++V G + KL IWDTAGQ
Sbjct: 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
ERFRTLT SYYRGAQG+ILVYDVTRR+TF L D W E++ Y T D V LVGNK+D+
Sbjct: 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKL-DNWLNELETYCTRNDIVNXLVGNKIDK 133
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLE 184
++ R V R EG+ A++H LF+E SAKT + V+ FE+L KI++ P L E
Sbjct: 134 EN-REVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGLWE 184
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 166 bits (421), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 114/172 (66%), Gaps = 3/172 (1%)
Query: 6 GQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKL 64
G + YD FK+LLIGDSGVGK TIGVDFKI+ +++ K +KL
Sbjct: 1 GMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKL 60
Query: 65 TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
IWDTAGQERFRT+TSSYYRGA GII+VYDVT R++F N+ W +E+D Y+ ++ K+
Sbjct: 61 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQ-WIQEIDRYAM-ENVNKL 118
Query: 125 LVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
LVGNK D S+RVV+ +EG LA HG F+E SAK NVEQ F +A +I
Sbjct: 119 LVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 160 bits (405), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 92/179 (51%), Positives = 117/179 (65%), Gaps = 4/179 (2%)
Query: 1 MGSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAG 59
+ +SSG SYD KILLIGDSGVGK TIG+DFKIK + + G
Sbjct: 7 VSASSGNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDING 66
Query: 60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
K++KL +WDTAGQERFRT+T++YYRGA GIILVYDVT TFTN+ W K V+ ++ N
Sbjct: 67 KKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-ND 124
Query: 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
+ +LVGNK D ++ RVV+ ++G ALAKE G F+E SAK +NV + F LA I E
Sbjct: 125 EAQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/177 (49%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 1 MGSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAG 59
+GS S + YD FK+LLIGDSGVGK TIGVDFKI+ + + G
Sbjct: 3 LGSMSSMNPEYDYLFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62
Query: 60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
K +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +E+F N+ W +E+D Y++ +
Sbjct: 63 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-E 120
Query: 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
+ K+LVGNK D +++VV A G FLE SAK NVEQ F +A +I
Sbjct: 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 88/177 (49%), Positives = 112/177 (63%), Gaps = 3/177 (1%)
Query: 1 MGSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAG 59
+GS S + YD FK+LLIGDSGVGK TIGVDFKI+ + + G
Sbjct: 3 LGSMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG 62
Query: 60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
K +KL IWDTAGQERFRT+TSSYYRGA GII+VYDVT +E+F N+ W +E+D Y++ +
Sbjct: 63 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-E 120
Query: 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
+ K+LVGNK D +++VV A G FLE SAK NVEQ F +A +I
Sbjct: 121 NVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 157 bits (396), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 113/171 (66%), Gaps = 3/171 (1%)
Query: 9 NSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXP-TIGVDFKIKLLTVAGKRLKLTIW 67
++Y FK ++IGD+GVGK TIGV+F +++T+ GK++KL IW
Sbjct: 5 SAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIW 64
Query: 68 DTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVG 127
DTAGQE FR++T SYYRGA G +LVYD+TRR+TF +L+ W ++ +S N + V ML+G
Sbjct: 65 DTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLT-TWLEDARQHS-NSNMVIMLIG 122
Query: 128 NKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
NK D +S R V +EEG A A+EHG +F+E SAKT NVE+ F A +I E
Sbjct: 123 NKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYE 173
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 155 bits (392), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 108/172 (62%), Gaps = 3/172 (1%)
Query: 6 GQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKL 64
G YD FK+LLIGDSGVGK TIGVDFKI+ + + GK +KL
Sbjct: 1 GHMPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 60
Query: 65 TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
IWDTAGQERFRT+TSSYYRGA GII+VYDVT +E++ N+ W +E+D Y++ ++ K+
Sbjct: 61 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKL 118
Query: 125 LVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
LVGNK D +++VV A G FLE SAK NVEQ F +A +I
Sbjct: 119 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 108/172 (62%), Gaps = 3/172 (1%)
Query: 6 GQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKL 64
G YD FK+LLIGDSGVGK TIGVDFKI+ + + GK +KL
Sbjct: 1 GHMPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKL 60
Query: 65 TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
IWDTAGQERFRT+TSSYYRGA GII+VYDVT +E++ N+ W +E+D Y++ ++ K+
Sbjct: 61 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQ-WLQEIDRYAS-ENVNKL 118
Query: 125 LVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
LVGNK D +++VV A G FLE SAK NVEQ F +A +I
Sbjct: 119 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/170 (50%), Positives = 108/170 (63%), Gaps = 3/170 (1%)
Query: 8 SNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTI 66
S YD FK+LLIGDSGVGK TIGVDFKI+ + + GK +KL I
Sbjct: 19 SPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQI 78
Query: 67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
WDTAGQERFRT+TSSYYRGA GII+VYDVT +E+F N+ W +E+D Y++ ++ K+LV
Sbjct: 79 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLV 136
Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
GNK D +++VV A G FLE SAK NVEQ F +A +I
Sbjct: 137 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 112/170 (65%), Gaps = 3/170 (1%)
Query: 8 SNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTI 66
+ +YD FK+LLIGDSGVGK TIG+DFKI+ + + GKR+KL I
Sbjct: 2 AKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61
Query: 67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
WDTAGQERFRT+T++YYRGA GI+LVYD+T ++F N+ + W + ++ +++ D KM++
Sbjct: 62 WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMIL 119
Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
GNK D + +R VS+E G LA ++G F+E SAK NVE F LA I
Sbjct: 120 GNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 107/167 (64%), Gaps = 3/167 (1%)
Query: 11 YDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
YD FK+LLIGDSGVGK TIGVDFKI+ + + GK +KL IWDT
Sbjct: 3 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 70 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
AGQERFRT+TSSYYRGA GII+VYDVT +E+F N+ W +E+D Y++ ++ K+LVGNK
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNK 120
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
D +++VV A G FLE SAK NVEQ F +A +I
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 83/179 (46%), Positives = 114/179 (63%), Gaps = 4/179 (2%)
Query: 1 MGSSSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXP-TIGVDFKIKLLTVAG 59
+GS++ N Y FK ++IGD GVGK P TIGV+F +++ V+G
Sbjct: 3 LGSATAPYN-YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG 61
Query: 60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
+++KL IWDTAGQERFR +T SYYRGA G ++VYD+TRR T+ +LS +L TN
Sbjct: 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNP 119
Query: 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
+ V +L+GNK D +++R V+ EE A+E+G LFLE SAKT ENVE F + A KI +
Sbjct: 120 NTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 154 bits (388), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 107/167 (64%), Gaps = 3/167 (1%)
Query: 11 YDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
YD FK+LLIGDSGVGK TIGVDFKI+ + + GK +KL IWDT
Sbjct: 3 YDALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 70 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
AGQERFRT+TSSYYRGA GII+VYDVT +E+F N+ W +E+D Y++ ++ K+LVGNK
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNK 120
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
D +++VV A G FLE SAK NVEQ F +A +I
Sbjct: 121 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 86/173 (49%), Positives = 108/173 (62%), Gaps = 3/173 (1%)
Query: 5 SGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLK 63
S + YD FK+LLIGDSGVGK TIGVDFKI+ + + GK +K
Sbjct: 24 SSXNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIK 83
Query: 64 LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK 123
L IWDTAGQERFRT+TSSYYRGA GII+VYDVT +E+F N+ W +E+D Y++ ++ K
Sbjct: 84 LQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNK 141
Query: 124 MLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
+LVGNK D +++VV A G FLE SAK NVEQ F A +I
Sbjct: 142 LLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/168 (51%), Positives = 110/168 (65%), Gaps = 4/168 (2%)
Query: 12 DLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
D KILLIGDSGVGK TIG+DFKIK + + GK++KL IWDTA
Sbjct: 1 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTA 60
Query: 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
GQERFRT+T++YYRGA GIILVYD+T TFTN+ W K V+ ++ N + +LVGNK
Sbjct: 61 GQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKS 118
Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
D ++ RVV+ ++G ALAKE G F+E SAK +NV + F LA I E
Sbjct: 119 DMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 106/167 (63%), Gaps = 3/167 (1%)
Query: 11 YDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
YD FK+LLIGDSGVGK TIGVDFKI+ + + GK +KL IWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 70 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
AGQERFRT+TSSYYRGA GII+VYDVT +E+F N+ W +E+D Y++ ++ K+LVG K
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGIK 122
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
D +++VV A G FLE SAK NVEQ F +A +I
Sbjct: 123 CDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 150 bits (379), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/164 (52%), Positives = 109/164 (66%), Gaps = 4/164 (2%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
KILLIGDSGVGK TIG+DFKIK + + GK++KL IWDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
FRT+T++YYRGA GIILVYD+T TFTN+ W K V+ ++ N + +LVGNK D ++
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDXET 122
Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
RVV+ ++G ALAKE G F+E SAK +NV + F LA I E
Sbjct: 123 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 150 bits (379), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/204 (44%), Positives = 119/204 (58%), Gaps = 6/204 (2%)
Query: 11 YDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
YD FK+LLIG+SGVGK TIGVDFKIK + + GK +KL IWDT
Sbjct: 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 70 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
AGQERFRT+TSSYYRG+ GII+VYDVT +E+F + +W +E+D Y+T+ +K+LVGNK
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATST-VLKLLVGNK 122
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS---LLEEG 186
D +RVV + A + FLE SA NVE F +A +I E S L E
Sbjct: 123 CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETT 182
Query: 187 SNVVKRNILKQKPENQSPPIGGCC 210
+ + K ++ + GGCC
Sbjct: 183 QKKEDKGNVNLKGQSLTNTGGGCC 206
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 80/166 (48%), Positives = 109/166 (65%), Gaps = 3/166 (1%)
Query: 12 DLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
D FK+LLIGDSGVGK TIG+DFKI+ + + GKR+KL IWDTA
Sbjct: 4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTA 63
Query: 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
GQERFRT+T++YYRGA GI+LVYD+T ++F N+ + W + ++ +++ D KM++GNK
Sbjct: 64 GQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN-WIRNIEEHAS-ADVEKMILGNKC 121
Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
D + +R VS+E G LA ++G F+E SAK NVE F LA I
Sbjct: 122 DVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 111/178 (62%), Gaps = 3/178 (1%)
Query: 2 GSSSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXP-TIGVDFKIKLLTVAGK 60
GS + +Y FK ++IGD GVGK P TIGV+F +++ V+G+
Sbjct: 18 GSMATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ 77
Query: 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
++KL IWDTAGQ RFR +T SYYRGA G ++VYD+TRR T+ +LS +L TN +
Sbjct: 78 KIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL--TNPN 135
Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
V +L+GNK D +++R V+ EE A+E+G LFLE SAKT ENVE F + A KI +
Sbjct: 136 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 193
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/164 (52%), Positives = 109/164 (66%), Gaps = 4/164 (2%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
KILLIGDSGVGK TIG+DFKIK + + GK++KL +WDTAGQER
Sbjct: 9 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
FRT+T++YYRGA GIILVYDVT TFTN+ W K V+ ++ N + +LVGNK D ++
Sbjct: 69 FRTITTAYYRGAMGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDMET 126
Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
RVV+ ++G ALAKE G F+E SAK +NV + F LA I E
Sbjct: 127 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 169
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 150 bits (378), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 77/165 (46%), Positives = 106/165 (64%), Gaps = 4/165 (2%)
Query: 11 YDLSFKILLIGDSGVGKX--XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWD 68
YD++FK++L+GDSGVGK T+G+DF+ K+L V G ++KL +WD
Sbjct: 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 66
Query: 69 TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
TAGQERFR++T +YYR A ++L+YDVT + +F N+ W E+ Y+ D ML+GN
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQ-AWLTEIHEYA-QHDVALMLLGN 124
Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
KVD ERVV RE+G LAKE+G F+E SAKT NV+ F +A
Sbjct: 125 KVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA 169
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 80/163 (49%), Positives = 109/163 (66%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXP-TIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK ++IGD+GVGK TIGV+F +++ + GK++KL IWDTAGQE
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
FR++T SYYRGA G +LVYD+TRRETF +L+ W ++ +S++ + V ML+GNK D +
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTS-WLEDARQHSSS-NMVIMLIGNKSDLE 139
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
S R V REEG A A+EHG +F+E SAKT NVE+ F A +I
Sbjct: 140 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 149 bits (377), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 86/164 (52%), Positives = 109/164 (66%), Gaps = 4/164 (2%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
KILLIGDSGVGK TIG+DFKIK + + GK++KL +WDTAGQER
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
FRT+T++YYRGA GIILVYDVT TFTN+ W K V+ ++ N + +LVGNK D ++
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQ-WFKTVNEHA-NDEAQLLLVGNKSDXET 122
Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
RVV+ ++G ALAKE G F+E SAK +NV + F LA I E
Sbjct: 123 -RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 117/207 (56%), Gaps = 13/207 (6%)
Query: 11 YDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
YD FK+LLIG+SGVGK TIGVDFKIK + + GK +KL IWDT
Sbjct: 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 70 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
AGQERFRT+TSSYYRG+ GII+VYDVT +E+F + +W +E+D Y+T+ +K+LVGNK
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATST-VLKLLVGNK 122
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNV 189
D +RVV + A + FLE SA NVE F +A +I E S
Sbjct: 123 CDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETT 182
Query: 190 VKR------NILKQKPENQSPPIGGCC 210
K+ N+ Q N GGCC
Sbjct: 183 QKKEDKGNVNLKGQSLTN----TGGCC 205
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 104/162 (64%), Gaps = 3/162 (1%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K+LLIGDSGVGK TIGVDFKI+ + + GK +KL IWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
FRT+TSSYYRGA GII+VYDVT +E+F N+ W +E+D Y++ ++ K+LVGNK D +
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCDLTT 118
Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
++VV A G FLE SAK NVEQ F +A +I
Sbjct: 119 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 110/178 (61%), Gaps = 3/178 (1%)
Query: 2 GSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGK 60
GS + + YD FK+LLIG+SGVGK TIGVDFKIK + + GK
Sbjct: 9 GSLVPRGSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGK 68
Query: 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
+KL IWDTAGQERFRT+TSSYYRG+ GII+VYDVT +E+F + +W +E+D Y+T+
Sbjct: 69 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVK-MWLQEIDRYATST- 126
Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
+K+LVGNK D +RVV + A + FLE SA NVE F +A +I E
Sbjct: 127 VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE 184
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 145 bits (367), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/170 (47%), Positives = 105/170 (61%), Gaps = 3/170 (1%)
Query: 10 SYDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWD 68
++D FKIL+IG+S VGK T+G+DFK+K + KR+KL IWD
Sbjct: 1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWD 60
Query: 69 TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
TAGQER+RT+T++YYRGA G IL+YD+T E+F + D W+ ++ YS + V +LVGN
Sbjct: 61 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLVGN 118
Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
K D + ERVVS E G LA G F E SAK NV+Q FE+L I E
Sbjct: 119 KCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 168
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/203 (43%), Positives = 116/203 (57%), Gaps = 9/203 (4%)
Query: 8 SNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTI 66
S+ +D FKIL+IG+S VGK T+G+DFK+K + KR+KL I
Sbjct: 2 SHXFDYXFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQI 61
Query: 67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
WDTAG ER+RT+T++YYRGA G IL YD+T E+F + D W+ ++ YS + V +LV
Sbjct: 62 WDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQD-WSTQIKTYSWDNAQV-LLV 119
Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS-LLEE 185
GNK D + ERVVS E G LA G F E SAK NV+Q FE+L I E S L+
Sbjct: 120 GNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKXSESLDT 179
Query: 186 GSNVVKRNILKQKPE---NQSPP 205
V KQ P+ Q+PP
Sbjct: 180 ADPAVTG--AKQGPQLTDQQAPP 200
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/175 (46%), Positives = 108/175 (61%), Gaps = 8/175 (4%)
Query: 4 SSGQSNSY-----DLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTV 57
SSG+ N Y D FK+L+IG+S VGK T+G+DFK+K +
Sbjct: 8 SSGRENLYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR 67
Query: 58 AGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYST 117
KR+KL IWDTAGQER+RT+T++YYRGA G IL+YD+T E+F + D WA ++ YS
Sbjct: 68 HEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD-WATQIKTYSW 126
Query: 118 NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
+ V +LVGNK D + ERVV E+G LA++ G F E SAK +V Q FE+L
Sbjct: 127 DNAQV-ILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL 180
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/171 (46%), Positives = 108/171 (63%), Gaps = 3/171 (1%)
Query: 8 SNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTI 66
S +YD FK L+IG++G GK TIGV+F K++ V GK +KL I
Sbjct: 4 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 63
Query: 67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
WDTAGQERFR++T SYYRGA G +LVYD+T RET+ L++ W + + ++ Q+ V +L
Sbjct: 64 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILC 121
Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
GNK D D++R V+ E A+E+ +FLE SA T ENVE+ F Q A KI+
Sbjct: 122 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 172
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 104/168 (61%), Gaps = 3/168 (1%)
Query: 12 DLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
D FK+LLIG+S VGK T+G+DFK+K + KR+KL IWDTA
Sbjct: 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTA 79
Query: 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
GQER+RT+T++YYRGA G +L+YD+ +E+F + D WA ++ YS + V +LVGNK
Sbjct: 80 GQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD-WATQIKTYSWDNAQV-ILVGNKC 137
Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
D + ERVV E+G LA + G F E SAK NV+Q FE+L I E
Sbjct: 138 DLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 139 bits (351), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 108/171 (63%), Gaps = 3/171 (1%)
Query: 8 SNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTI 66
S +YD FK L+IG++G GK TIGV+F K++ V GK +KL I
Sbjct: 5 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 64
Query: 67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
WDTAGQERFR++T SYYRGA G +LVYD+T RET+ L++ W + + ++ Q+ V +L
Sbjct: 65 WDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILC 122
Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
GNK D D++R V+ E A+E+ +FLE SA T E+VE+ F Q A KI+
Sbjct: 123 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 173
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 137 bits (345), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 78/175 (44%), Positives = 103/175 (58%), Gaps = 13/175 (7%)
Query: 8 SNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTI 66
+ YD FK+L+IGDSGVGK TIGVDFKI+ + + G+++KL I
Sbjct: 3 ARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQI 62
Query: 67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC---VK 123
WDTAGQERFRT+TS+YYRG G+I+VYDVT E+F N+ W E+ NQ+C +
Sbjct: 63 WDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR-WLHEI-----NQNCDDVCR 116
Query: 124 MLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ---CFEQLALK 175
+LVGNK D +VV E+ A + G E SAK NVE+ C +L L+
Sbjct: 117 ILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 77/171 (45%), Positives = 107/171 (62%), Gaps = 3/171 (1%)
Query: 8 SNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTI 66
S +YD FK L+IG++G GK TIGV+F K++ V GK +KL I
Sbjct: 2 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQI 61
Query: 67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
WDTAG ERFR++T SYYRGA G +LVYD+T RET+ L++ W + + ++ Q+ V +L
Sbjct: 62 WDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTN-WLTDARMLAS-QNIVIILC 119
Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
GNK D D++R V+ E A+E+ +FLE SA T E+VE+ F Q A KI+
Sbjct: 120 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 170
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 136 bits (343), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 106/173 (61%), Gaps = 3/173 (1%)
Query: 6 GQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKL 64
G YD FKI+LIG++GVGK TIGVDF IK + + G+++KL
Sbjct: 18 GSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKL 77
Query: 65 TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
IWDTAGQERFR++T SYYR A +IL YD+T E+F L + W +E++ Y++N+ + +
Sbjct: 78 QIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE-WLREIEQYASNK-VITV 135
Query: 125 LVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
LVGNK+D R VS++ ++ +LE SAK +NVE+ F LA +++
Sbjct: 136 LVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 135 bits (340), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 111/175 (63%), Gaps = 4/175 (2%)
Query: 6 GQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXX-XPTIGVDFKIKLLTVAGKRLKL 64
G D ++++IG GVGK T+GVDFKIK + + GK+++L
Sbjct: 18 GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRL 77
Query: 65 TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
IWDTAGQERF ++TS+YYR A+GIILVYD+T++ETF +L W K +D Y++ +D +
Sbjct: 78 QIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK-WMKMIDKYAS-EDAELL 135
Query: 125 LVGNKVDRDSERVVSREEGIALAKE-HGSLFLECSAKTRENVEQCFEQLALKIME 178
LVGNK+D +++R ++R++G A++ G F E SAK NV++ F +L I++
Sbjct: 136 LVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK 190
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 132 bits (331), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 104/169 (61%), Gaps = 4/169 (2%)
Query: 11 YDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
YD FK++L+GD+ VGK TIGVDF +K L + GKR+KL IWDT
Sbjct: 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDT 85
Query: 70 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
AGQERFRT+T SYYR A G IL YD+T+R +F ++ W ++V Y+ + V++L+GNK
Sbjct: 86 AGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH-WIEDVRKYA-GSNIVQLLIGNK 143
Query: 130 VDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIM 177
D R VS E +LA+ + L +E SAK NVE+ F ++A +++
Sbjct: 144 SDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 75/170 (44%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
Query: 11 YDLSFKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
YDL FKI+LIGDSGVGK TIGV+F + L + GKR+K IWDT
Sbjct: 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDT 69
Query: 70 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGN 128
AGQER+R +TS+YYRGA G ++VYD+++ ++ N + W E L D V + L+GN
Sbjct: 70 AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLSE--LRENADDNVAVGLIGN 126
Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
K D R V EE A+E+ LF E SA ENV++ FE+L I +
Sbjct: 127 KSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQ 176
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 130 bits (326), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 102/171 (59%), Gaps = 3/171 (1%)
Query: 10 SYDLSFKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWD 68
SYD FK++LIGDSGVGK TIGV+F + + V GK +K IWD
Sbjct: 16 SYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 75
Query: 69 TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
TAGQER+R +TS+YYRGA G +LVYD+ + T+ N+ + W KE+ ++ + + V MLVGN
Sbjct: 76 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGN 133
Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179
K D R V +E A A+++G F+E SA NVE F+ + +I +
Sbjct: 134 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 102/171 (59%), Gaps = 3/171 (1%)
Query: 7 QSNSYDLSFKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLT 65
+ + YD FK++LIGDSGVGK TIGV+F + + V GK +K
Sbjct: 22 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 81
Query: 66 IWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKML 125
IWDTAGQER+R +TS+YYRGA G +LVYD+ + T+ N+ + W KE+ ++ + + V ML
Sbjct: 82 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIML 139
Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
VGNK D R V +E A A+++G F+E SA NVE F+ + +I
Sbjct: 140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 98/167 (58%), Gaps = 3/167 (1%)
Query: 12 DLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
D FK L+IG +G GK TIGV+F +++ V GK +KL IWDTA
Sbjct: 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTA 82
Query: 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
GQERFR++T SYYRGA G +LVYD+T RET+ +L+ L S N V +L GNK
Sbjct: 83 GQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKK 140
Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
D D ER V+ E A+E+ +FLE SA T ENVE+ F + A I+
Sbjct: 141 DLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 187
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 110/195 (56%), Gaps = 12/195 (6%)
Query: 11 YDLSFKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
YD FK++LIGDSGVGK TIGV+F + + V GK +K IWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 70 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
AGQER+R +TS+YYRGA G +LVYD+ + T+ N+ + W KE+ ++ + + V MLVGNK
Sbjct: 62 AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLVGNK 119
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNV 189
D R V +E A A+++ F+E SA NVE+ F+ + +I + V
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI---------V 170
Query: 190 VKRNILKQKPENQSP 204
++ I + ++SP
Sbjct: 171 SQKQIADRAAHDESP 185
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/173 (41%), Positives = 102/173 (58%), Gaps = 3/173 (1%)
Query: 8 SNSYDLSFKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTI 66
S+ YD FK++LIGDSGVGK TIGV+F + + V GK +K I
Sbjct: 2 SDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQI 61
Query: 67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV 126
WDTAG ER+R +TS+YYRGA G +LVYD+ + T+ N+ + W KE+ ++ + + V MLV
Sbjct: 62 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIMLV 119
Query: 127 GNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179
GNK D R V +E A A+++G F+E SA NVE F+ + +I +
Sbjct: 120 GNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 125 bits (314), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 101/171 (59%), Gaps = 3/171 (1%)
Query: 7 QSNSYDLSFKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLT 65
+ + YD FK++LIGDSGVGK TIGV+F + + V GK +K
Sbjct: 22 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 81
Query: 66 IWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKML 125
IWDTAG ER+R +TS+YYRGA G +LVYD+ + T+ N+ + W KE+ ++ + + V ML
Sbjct: 82 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIML 139
Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
VGNK D R V +E A A+++G F+E SA NVE F+ + +I
Sbjct: 140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 99/171 (57%), Gaps = 4/171 (2%)
Query: 11 YDLSFKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRL-KLTIWD 68
YD FKI+LIGDSGVGK TIGV+F K + + ++ K IWD
Sbjct: 4 YDYLFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWD 63
Query: 69 TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
TAGQER+R +TS+YYRGA G +LVYD+T++ +F N+ + W KE+ + + + V +LVGN
Sbjct: 64 TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRD-NADSNIVILLVGN 121
Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179
K D RV++ + AK+ F+E SA NVE F QL +I V
Sbjct: 122 KSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNV 172
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 100/171 (58%), Gaps = 3/171 (1%)
Query: 7 QSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLT 65
+ + YD FK++LIGDSGVGK TIGV+F + + V GK +K
Sbjct: 4 RDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQ 63
Query: 66 IWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKML 125
IWDTAG ER+R +TS+YYRGA G +LVYD+ + T+ N+ + W KE+ ++ + + V L
Sbjct: 64 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIXL 121
Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
VGNK D R V +E A A+++G F+E SA NVE F+ + +I
Sbjct: 122 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 172
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 98/167 (58%), Gaps = 3/167 (1%)
Query: 11 YDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
YD FK++LIGDSGVGK TIGV+F + + V GK +K IWDT
Sbjct: 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 61
Query: 70 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
AG ER+R +TS+YYRGA G +LVYD+ + T+ N+ + W KE+ ++ + + V LVGNK
Sbjct: 62 AGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHA-DSNIVIXLVGNK 119
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
D R V +E A A+++G F+E SA NVE F+ + +I
Sbjct: 120 SDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 166
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 120 bits (300), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 81/116 (69%), Gaps = 3/116 (2%)
Query: 17 ILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
+LLIGDSGVGK TIGVDFKI+ + + GK +KL IWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
RT+TSSYYRGA GII+VYDVT +E+F N+ W +E+D Y++ ++ K+LVGNK D
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQ-WLQEIDRYAS-ENVNKLLVGNKCD 114
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 97/173 (56%), Gaps = 5/173 (2%)
Query: 11 YDLSFKILLIGDSGVGKXXXXX-XXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
YD FKI+LIGDSGVGK TIGV+F + + V K++K IWDT
Sbjct: 7 YDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDT 66
Query: 70 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGN 128
AG ER+R +TS+YYRGA G ++VYD+++ ++ N + W E L D V + L+GN
Sbjct: 67 AGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNH-WLTE--LRENADDNVAVGLIGN 123
Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS 181
K D R V +E A E+ LF E SA +NV++ F +L + I ++ S
Sbjct: 124 KSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVS 176
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/172 (41%), Positives = 95/172 (55%), Gaps = 5/172 (2%)
Query: 8 SNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXX-XXPTIGVDFKIKLLTVAGKRLKLTI 66
S Y+ FK++LIG+SGVGK TIGV+F + + + +K I
Sbjct: 19 SEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQI 78
Query: 67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLY-STNQDCVKML 125
WDTAG ER+R +TS+YYRGA G +LV+D+T+ +T+ + + W KE LY V ML
Sbjct: 79 WDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKE--LYDHAEATIVVML 135
Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
VGNK D R V EE A+ +G LFLE SA NVE FE + +I
Sbjct: 136 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 70/167 (41%), Positives = 93/167 (55%), Gaps = 6/167 (3%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXX-XXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
S K++L+G++ VGK PTIG F + +T+ +K IWDTAGQ
Sbjct: 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
ERF +L YYR AQ ++VYDVT+ ++F W KE+ ++D + LVGNK+D
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARH-WVKELH-EQASKDIIIALVGNKIDX 120
Query: 132 --RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
ER V+REEG LA+E G LF E SAKT ENV F + KI
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/169 (41%), Positives = 95/169 (56%), Gaps = 5/169 (2%)
Query: 11 YDLSFKILLIGDSGVGKXXXXXXXXXXXXXX-XXPTIGVDFKIKLLTVAGKRLKLTIWDT 69
Y+ FK++LIG+SGVGK TIGV+F + + + +K IWDT
Sbjct: 7 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDT 66
Query: 70 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ-DCVKMLVGN 128
AG ER+R +TS+YYRGA G +LV+D+T+ +T+ + + W KE LY + V MLVGN
Sbjct: 67 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYA-VVERWLKE--LYDHAEATIVVMLVGN 123
Query: 129 KVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
K D R V EE A+ +G LFLE SA NVE FE + +I
Sbjct: 124 KSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 110 bits (274), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/163 (39%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++L+G+S VGK TIG F + + + +K IWDTAGQE
Sbjct: 9 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
R+ +L YYRGAQ I+VYD+T +ETF + W KE+ ++ V L GNK D
Sbjct: 69 RYHSLAPMYYRGAQAAIVVYDITNQETFAR-AKTWVKELQRQAS-PSIVIALAGNKADLA 126
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
++R+V EE A A ++ LF+E SAKT NV F +A K+
Sbjct: 127 NKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 102/179 (56%), Gaps = 9/179 (5%)
Query: 5 SGQSNSYDLSFKILLIGDSGVGKXXXXXXX-XXXXXXXXXPTIGVDFKIKLLTVAGKRLK 63
S +S S ++KI+L GD+ VGK T+GVDF++K L V G+R
Sbjct: 19 SAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTV 78
Query: 64 LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK 123
L +WDTAGQERFR++ SY+R A G++L+YDVT ++F N+ + W ++ + ++
Sbjct: 79 LQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE-WVDMIE-DAAHETVPI 136
Query: 124 MLVGNKVD-RDS-----ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
MLVGNK D RD+ ++ V G LA +G+LF E SAK N+ + LA ++
Sbjct: 137 MLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 92/166 (55%), Gaps = 3/166 (1%)
Query: 14 SFKILLIGDSGVGKXXXXXXX-XXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
SFK++L+G+ VGK T+G F K L + GKR+ L IWDTAGQ
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
ERF L YYR + G ILVYD+T ++F + + W KE+ N+ C+ +VGNK+D
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKIDL 123
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
+ ER VS +E + A+ G+ SAK + +E+ F L +++E
Sbjct: 124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 108 bits (270), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/163 (38%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++L+G+S VGK TIG F + + + +K IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
R+ +L YYRGAQ I+VYD+T +TF + W KE+ ++ + V L GNK D
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQAS-PNIVIALAGNKADLA 121
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
S+R V +E A A ++ LF+E SAKT NV + F +A K+
Sbjct: 122 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 108 bits (269), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 102/183 (55%), Gaps = 14/183 (7%)
Query: 8 SNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXXX-PTIGVDFKIKLLTV--------A 58
S YD K+L +GDSGVGK T+G+DF+ K + +
Sbjct: 19 SGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSS 78
Query: 59 GKRLK--LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAK-EVDLY 115
GK K L +WDTAGQERFR+LT++++R A G +L++D+T +++F N+ + ++ + + Y
Sbjct: 79 GKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAY 138
Query: 116 STNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALK 175
N D V L+GNK D +R V+ + LA ++G + E SA T +NVE+ E L
Sbjct: 139 CENPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 196
Query: 176 IME 178
IM+
Sbjct: 197 IMK 199
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 107 bits (266), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 102/196 (52%), Gaps = 4/196 (2%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++ +G+ VGK TIG+DF K + + + ++L +WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
RFR+L SY R + ++VYD+T +F + W +V D + MLVGNK D
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTK-WIDDVRT-ERGSDVIIMLVGNKTDLA 131
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKRN 193
+R VS EEG AKE +F+E SAK NV+Q F ++A + + S ++ S +
Sbjct: 132 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES-TQDRSREDMID 190
Query: 194 ILKQKPENQSPPIGGC 209
I +KP+ Q GGC
Sbjct: 191 IKLEKPQEQPVSEGGC 206
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 106 bits (265), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 16/181 (8%)
Query: 11 YDLSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVA----------G 59
YD K L +GDSGVGK T+G+DF+ K + G
Sbjct: 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRG 67
Query: 60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDL--YST 117
+R+ L +WDTAG ERFR+LT++++R A G +L++D+T ++F N+ + W ++ + YS
Sbjct: 68 QRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSE 126
Query: 118 NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
N D V L GNK D + +R V EE LA+++G + E SA N+ E L IM
Sbjct: 127 NPDIV--LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184
Query: 178 E 178
+
Sbjct: 185 K 185
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++L+G+S VGK TIG F + + + +K IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
R+ +L YYRGAQ I+VYD+T E+F + W KE+ ++ + V L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
++R V +E + A ++ LF+E SAKT NV + F +A K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++L+G+S VGK TIG F + + + +K IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
R+ +L YYRGAQ I+VYD+T E+F + W KE+ ++ + V L GNK D
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 125
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
++R V +E + A ++ LF+E SAKT NV + F +A K+
Sbjct: 126 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXX-XXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++ +G+ VGK TIG+DF K + + + ++L +WDTAGQE
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
RFR+L SY R + ++VYD+T +F S W +V D + MLVGNK D
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSK-WIDDVRT-ERGSDVIIMLVGNKTDLA 120
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
+R ++ EEG AKE +F+E SAKT NV+Q F ++A ++E
Sbjct: 121 DKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 3/166 (1%)
Query: 14 SFKILLIGDSGVGKXXXXXXX-XXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
SFK++L+G+ VGK T+ F K L + GKR+ L IWDTAGQ
Sbjct: 20 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
ERF L YYR + G ILVYD+T ++F + + W KE+ N+ C+ +VGNK+D
Sbjct: 80 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKIDL 137
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
+ ER VS +E + A+ G+ SAK + +E+ F L +++E
Sbjct: 138 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 183
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 106 bits (264), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++L+G+S VGK TIG F + + + +K IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
R+ +L YYRGAQ I+VYD+T E+F + W KE+ ++ + V L GNK D
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 125
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
++R V +E + A ++ LF E SAKT NV + F +A K+
Sbjct: 126 NKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++L+G+S VGK TI F + + + +K IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
R+ +L YYRGAQ I+VYD+T +TF + W KE+ ++ + V L GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQRQAS-PNIVIALAGNKADLA 123
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
S+R V +E A A ++ LF+E SAKT NV + F +A K+
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++L+G+S VGK TIG F + + + +K IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
R+ +L YYRGAQ I+VYD+T +TF + W KE+ + + V L GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKN-WVKELQ-RQASPNIVIALAGNKADLA 123
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
S+R V +E A A ++ LF+E SAKT NV + F +A K+
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 91/166 (54%), Gaps = 3/166 (1%)
Query: 14 SFKILLIGDSGVGKXXXXXXX-XXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
SFK++L+G+ VGK T+ F K L + GKR+ L IWDTAGQ
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
ERF L YYR + G ILVYD+T ++F + + W KE+ N+ C+ +VGNK+D
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN-WVKELRKMLGNEICL-CIVGNKIDL 123
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
+ ER VS +E + A+ G+ SAK + +E+ F L +++E
Sbjct: 124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 105 bits (262), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++L+G+S VGK TIG F + + + +K IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
R+ +L YYRGAQ I+VYD+T E+F + W KE+ ++ + V L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
++R V +E + A ++ LF+E SAKT NV + F +A K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++L+G+S VGK TIG F + + + +K IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
R+ +L YYRGAQ I+VYD+T E+F + W KE+ ++ + V L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
++R V +E + A ++ LF+E SAKT NV + F +A K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXX-XXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++ +G+ VGK TIG+DF K + + + ++L +WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
RFR+L SY R + ++VYD+T +F S W +V D + MLVGNK D
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSK-WIDDVRT-ERGSDVIIMLVGNKTDLS 132
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
+R VS EEG AKE +F+E SAK NV+Q F ++A
Sbjct: 133 DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 172
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 102/197 (51%), Gaps = 4/197 (2%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++ +G+ VGK TIG+DF K + + + ++L +WDTAG E
Sbjct: 17 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
RFR+L SY R + ++VYD+T +F + W +V D + MLVGNK D
Sbjct: 77 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK-WIDDVRT-ERGSDVIIMLVGNKTDLA 134
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKRN 193
+R VS EEG AKE +F+E SAK NV+Q F ++A + + S ++ S +
Sbjct: 135 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES-TQDRSREDMID 193
Query: 194 ILKQKPENQSPPIGGCC 210
I +KP+ Q GGC
Sbjct: 194 IKLEKPQEQPVSEGGCL 210
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++L+G+S VGK TIG F + + + +K IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
R+ +L YYRGAQ I+VYD+T E+F + W KE+ ++ + V L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
++R V +E + A ++ LF+E SAKT NV + F +A K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++L+G+S VGK TIG F + + + +K IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
R+ +L YYRGAQ I+VYD+T E+F + W KE+ ++ + V L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
++R V +E + A ++ LF+E SAKT NV + F +A K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXX-XXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++ +G+ VGK TIG+DF K + + + ++L +WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
RFR+L SY R + ++VYD+T +F + W +V D + MLVGNK D
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTK-WIDDVRT-ERGSDVIIMLVGNKTDLA 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
+R VS EEG AKE +F+E SAK NV+Q F ++A
Sbjct: 125 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 89/163 (54%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++L+G+S VGK TIG F + + + +K IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
R+ +L YYRGAQ I+VYD+T E+F + W KE+ ++ + V L GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
++R V +E + A ++ LF+E SAKT NV + F +A K+
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 92/163 (56%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXX-XXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
+K++ +G+ VGK TIG+DF K L + ++L +WDTAGQE
Sbjct: 2 YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
RFR+L SY R + I+VYD+T R++F N + W +++ L +D + LVGNK D
Sbjct: 62 RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDI-LNERGKDVIIALVGNKTDLG 119
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
R V+ EEG A+E+ + F E SAK N++ F++ A K+
Sbjct: 120 DLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 98/177 (55%), Gaps = 7/177 (3%)
Query: 13 LSFKILLIGDSGVGKXX-XXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
L K++L+GD GVGK TIGV+F + L V G+ + L IWDTAG
Sbjct: 6 LLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAG 65
Query: 72 QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGN 128
QERF++L + +YRGA +L + V R++F NL + W KE Y+ +D +++GN
Sbjct: 66 QERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGN-WQKEFIYYADVKDPEHFPFVVLGN 124
Query: 129 KVDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEVPSLLE 184
KVD++ +R V+ EE E+G +LE SAK NV FE+ +++ V LE
Sbjct: 125 KVDKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLE 180
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 93/179 (51%), Gaps = 4/179 (2%)
Query: 2 GSSSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGK 60
GS + N ++ K++L+GD G GK TIG F + L V
Sbjct: 1 GSMAAAGNK-SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDA 59
Query: 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
+K IWDTAGQER+ +L YYRGA I+V+DVT + +F + W +E+ N +
Sbjct: 60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFER-AKKWVQELQA-QGNPN 117
Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179
V L GNK D R V+ E+ A+E+G F+E SAKT NV++ F ++A ++ V
Sbjct: 118 MVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV 176
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 101/181 (55%), Gaps = 16/181 (8%)
Query: 11 YDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLT--------VAGKR 61
YD K+L +GDSGVGK T+G+DF+ K + +GK
Sbjct: 8 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 62 LK--LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV--DLYST 117
K L +WDTAG ERFR+LT++++R A G +L++D+T +++F N+ + W ++ + Y
Sbjct: 68 FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCE 126
Query: 118 NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIM 177
N D V L+GNK D +R V+ + LA+++G + E SA T +NVE+ E L IM
Sbjct: 127 NPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 178 E 178
+
Sbjct: 185 K 185
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 101/180 (56%), Gaps = 14/180 (7%)
Query: 11 YDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLT--------VAGKR 61
YD K+L +GDSGVGK T+G+DF+ K + +GK
Sbjct: 8 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKA 67
Query: 62 LK--LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAK-EVDLYSTN 118
K L +WDTAG ERFR+LT++++R A G +L++D+T +++F N+ + ++ + + Y N
Sbjct: 68 FKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 127
Query: 119 QDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
D V L+GNK D +R V+ + LA+++G + E SA T +NVE+ E L IM+
Sbjct: 128 PDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMK 185
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXX-XPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++L+GD GVGK TIGV+F K L V G + + IWDTAGQE
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM---LVGNKV 130
RFR+L + +YRG+ +L + V ++F NLS+ W KE Y+ ++ ++GNK+
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKI 126
Query: 131 DRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIM 177
D SER VS EE A +++G + E SAK NV FE+ +++
Sbjct: 127 DI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 93/168 (55%), Gaps = 7/168 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXX-XPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++L+GD GVGK TIGV+F K L V G + + IWDTAGQE
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM---LVGNKV 130
RFR+L + +YRG+ +L + V ++F NLS+ W KE Y+ ++ ++GNK+
Sbjct: 70 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKI 128
Query: 131 DRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIM 177
D SER VS EE A +++G + E SAK NV FE+ +++
Sbjct: 129 DI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++L+G+S VGK TIG F + + + +K IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
R+ +L YYRGAQ I+VYD+T E+F + W KE+ ++ + V L GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKN-WVKELQRQAS-PNIVIALSGNKADLA 123
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
++R V +E + A ++ LF+E SAKT NV + F +A K+
Sbjct: 124 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 91/168 (54%), Gaps = 7/168 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXX-XPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FKI+L+GD GVGK TIGV+F K L V G + + IWDTAGQE
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM---LVGNKV 130
RFR+L + +YRG+ +L + V ++F NLS+ W KE Y+ ++ ++GNK
Sbjct: 72 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKT 130
Query: 131 DRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIM 177
D ER VS EE A K++G + E SAK NV FE+ +I+
Sbjct: 131 DI-KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 85/167 (50%), Gaps = 6/167 (3%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FKI++IGDS VGK TIGVDF+ + + + G+R+K+ +WDTAGQE
Sbjct: 30 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 74 RFR-TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
RFR ++ YYR ++ VYD T +F +L W +E + D ++LVGNK D
Sbjct: 90 RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLP-AWIEECKQHLLANDIPRILVGNKCDL 148
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKT---RENVEQCFEQLALKI 176
S V + A H E SAK ++VE F LA K+
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXX-XXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++ +G+ VGK TIG+DF K + + + ++L +WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
RFR+L SY R + ++VYD+T +F + W +V D + MLVGNK D
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK-WIDDVRT-ERGSDVIIMLVGNKTDLA 119
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
+R VS EEG AKE +F+E SAK NV+Q F ++A
Sbjct: 120 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 159
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/167 (36%), Positives = 86/167 (51%), Gaps = 6/167 (3%)
Query: 15 FKILLIGDSGVGKXXXXXXX-XXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FKI++IGDS VGK TIGVDF+ + + + G+R+K+ +WDTAGQE
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 74 RFR-TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
RFR ++ YYR ++ VYD+T +F +L W +E + D ++LVGNK D
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP-AWIEECKQHLLANDIPRILVGNKCDL 139
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKT---RENVEQCFEQLALKI 176
S V + A H E SAK ++VE F LA K+
Sbjct: 140 RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXX-XXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
K+ L+GD+GVGK PTIG F K + + K IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
RF +L YYRG+ ++VYD+T++++F L W KE+ + ++ V + GNK D
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK-WVKELKEHGP-ENIVMAIAGNKCDLS 141
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
R V ++ A+ G++ +E SAK N+E+ F+ ++ +I
Sbjct: 142 DIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 98/181 (54%), Gaps = 16/181 (8%)
Query: 5 SGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLT------- 56
S YD K+L +GDSGVGK T+G+DF+ K +
Sbjct: 2 SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 57 -VAGKRLK--LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV- 112
+GK K L +WDTAG ERFR+LT++++R A G +L +D+T +++F N+ + W ++
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQ 120
Query: 113 -DLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171
+ Y N D V L+GNK D +R V+ + LA+++G + E SA T +NVE+ E
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 172 L 172
L
Sbjct: 179 L 179
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 98/181 (54%), Gaps = 16/181 (8%)
Query: 5 SGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLT------- 56
S YD K+L +GDSGVGK T+G+DF+ K +
Sbjct: 2 SXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGAD 61
Query: 57 -VAGKRLK--LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEV- 112
+GK K L +WDTAG ERFR+LT++++R A G +L +D+T +++F N+ + W ++
Sbjct: 62 GASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRN-WXSQLQ 120
Query: 113 -DLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171
+ Y N D V L+GNK D +R V+ + LA+++G + E SA T +NVE+ E
Sbjct: 121 ANAYCENPDIV--LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 172 L 172
L
Sbjct: 179 L 179
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/163 (35%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXX-XXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
K+ L+GD+GVGK PTIG F K + + K IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
RFR L YYRG+ I+VYD+T+ ETF+ L + W +E+ + V + GNK D
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGP-PSIVVAIAGNKCDLT 123
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
R V + A ++F+E SAK N+ + F +++ +I
Sbjct: 124 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 86/160 (53%), Gaps = 3/160 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
FK++ +G+ VGK TIG+DF K + + + ++L +WDTAG E
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
RFR+L SY R + ++VYD+T +F + W +V D + MLVGNK D
Sbjct: 67 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK-WIDDVRT-ERGSDVIIMLVGNKTDLA 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
+R VS EEG AKE +F+E SAK NV+Q F ++A
Sbjct: 125 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 164
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 96/167 (57%), Gaps = 10/167 (5%)
Query: 15 FKILLIGDSGVGKXX-XXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLK-LTIWDTAGQ 72
K++++GDSGVGK TIG DF K +TV G ++ + +WDTAGQ
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYS---TNQDCVKMLVGNK 129
ERF++L ++YRGA +LVYDVT +F N+ W E +++ + + +++GNK
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNK 127
Query: 130 VD-RDSERVVSREEGIALAKEHGS--LFLECSAKTRENVEQCFEQLA 173
+D +S+++VS + LAK G LFL SAK NV+ FE++A
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIA 173
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 89/163 (54%), Gaps = 5/163 (3%)
Query: 15 FKILLIGDSGVGKXX-XXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
K++++GDSGVGK TIG DF K + V + + + IWDTAGQE
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNKV 130
RF++L ++YRGA +LV+DVT TF L D W E + ++ +D +++GNK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
D ++ +V ++ ++ + E SAK NVEQ F+ +A
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 97.4 bits (241), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 5/162 (3%)
Query: 16 KILLIGDSGVGKXX-XXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GDSGVGK TIG DF K + V + + + IWDTAGQER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNKVD 131
F++L ++YRGA +LV+DVT TF L D W E + ++ +D +++GNK+D
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
++ +V ++ ++ + E SAK NVEQ F+ +A
Sbjct: 129 FENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 5/162 (3%)
Query: 16 KILLIGDSGVGKXX-XXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GDSGVGK TIG DF K + V + + + IWDTAGQER
Sbjct: 10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNKVD 131
F++L ++YRGA +LV+DVT TF L D W E + ++ +D +++GNK+D
Sbjct: 70 FQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
++ +V ++ ++ + E SAK NVEQ F+ +A
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 57/163 (34%), Positives = 82/163 (50%), Gaps = 3/163 (1%)
Query: 15 FKILLIGDSGVGKXXXX-XXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
K+ L+GD+GVGK PTIG F K + + K IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
RFR L YYRG+ I+VYD+T+ ETF+ L + W +E+ + V + GNK D
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKN-WVRELRQHGP-PSIVVAIAGNKCDLT 124
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
R V + A ++F+E SAK N+ + F +++ +I
Sbjct: 125 DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 5/163 (3%)
Query: 15 FKILLIGDSGVGKXX-XXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
K++++GDSGVGK TIG DF K + V + + + IWDTAG E
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNKV 130
RF++L ++YRGA +LV+DVT TF L D W E + ++ +D +++GNK+
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKI 127
Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173
D ++ +V ++ ++ + E SAK NVEQ F+ +A
Sbjct: 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIA 170
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 4/168 (2%)
Query: 12 DLSFKILLIGDSGVGKXXXXXXX-XXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTA 70
+++ K++++G+ VGK TIGVDF + + V + ++L +WDTA
Sbjct: 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 62
Query: 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130
GQE F +T +YYRGAQ +LV+ T RE+F +S W ++V + D LV NK+
Sbjct: 63 GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISS-WREKV--VAEVGDIPTALVQNKI 119
Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
D + + EE LAK F S K NV + F+ LA K ++
Sbjct: 120 DLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 91/174 (52%), Gaps = 5/174 (2%)
Query: 10 SYDLSFKILLIGDSGVGKXXXXX-XXXXXXXXXXXPTIGVDFKIKLLTVAGK-RLKLTIW 67
S+ KI+++GD GK TIG+DF ++ +T+ G + L IW
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 68 DTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVW--AKEVDLYSTNQDCVKML 125
D GQ + Y GAQG++LVYD+T ++F NL D + K+V S Q V L
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVA-L 120
Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179
VGNK+D + R + E+ + +E+G SAKT ++V CF+++A +I+ +
Sbjct: 121 VGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGI 174
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 6/171 (3%)
Query: 13 LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
+ FK++L+GD G GK PT+GV+ + +K +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72 QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
QE+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
+V + + I ++ + + SAK+ N E+ F LA K++ P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 87/171 (50%), Gaps = 6/171 (3%)
Query: 13 LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
+ FK++L+GD G GK PT+GV+ + +K +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72 QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
QE+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
+V + + I ++ + + SAK+ N E+ F LA K++ P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 87.0 bits (214), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
+K++++G GVGK PTI ++ K + V ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 62
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
+F + Y + QG LVY +T + TF +L D+ + + + T+ D +LVGNK D +
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCDLE 121
Query: 134 SERVVSREEGIALAKE-HGSLFLECSAKTRENVEQCFEQLALKI 176
ERVV +E+G LA++ + FLE SAK++ NV + F L +I
Sbjct: 122 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
+K++++G GVGK PTI ++ K + V ++ L I DTAG E
Sbjct: 6 YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDAQQCMLEILDTAGTE 64
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
+F + Y + QG LVY +T + TF +L D+ + + + T+ D +LVGNK D +
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTD-DVPMILVGNKCDLE 123
Query: 134 SERVVSREEGIALAKE-HGSLFLECSAKTRENVEQCFEQLALKI 176
ERVV +E+G LA++ + FLE SAK++ NV + F L +I
Sbjct: 124 DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI D K+ +V G +L I DTAGQE F + Y R G +LV+ + R++F
Sbjct: 40 PTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNE 98
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ ++ + + + + D +LVGNK D +S+R V R E A H + E SAK R
Sbjct: 99 VGKLFTQILRVKDRD-DFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRL 157
Query: 164 NVEQCFEQL 172
NV++ FEQL
Sbjct: 158 NVDEAFEQL 166
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 84/174 (48%), Gaps = 4/174 (2%)
Query: 12 DLSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIG-VDFKIKLLTVAGKRLKLTIWDT 69
+L++KI LIGD GVGK T+G V+ + L G +K +WDT
Sbjct: 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDT 68
Query: 70 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
AGQE+ L YY GA G IL +DVT R T NL+ W KE N+ + ++ NK
Sbjct: 69 AGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLAR-WVKEFQAVVGNEAPI-VVCANK 126
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLL 183
+D + + +S++ + + K + E SAKT N F LA P L+
Sbjct: 127 IDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLI 180
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 4/164 (2%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
+K++++G GVGK PTI ++ K + V ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
+F + Y + QG LVY +T + TF +L D+ + + + T +D +LVGNK D +
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 121
Query: 134 SERVVSREEGIALAKEH-GSLFLECSAKTRENVEQCFEQLALKI 176
ERVV +E+G LA++ FLE SAK++ NV + F L +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 4/164 (2%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
+K++++G GVGK PTI ++ K + V ++ L I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTE 62
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
+F + Y + QG LVY +T + TF +L D+ + + + T +D +LVGNK D +
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLE 121
Query: 134 SERVVSREEGIALAKEH-GSLFLECSAKTRENVEQCFEQLALKI 176
ERVV +E+G LA++ FLE SAK++ NV + F L +I
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 4 SSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRL 62
+S + FK++L+GD G GK T+GV+ + +
Sbjct: 5 ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPI 64
Query: 63 KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV 122
K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 65 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 121
Query: 123 KMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
+L GNKVD +V + + I ++ + + SAK+ N E+ F LA K++ P+L
Sbjct: 122 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 4 SSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRL 62
+S + FK++L+GD G GK T+GV+ + +
Sbjct: 5 ASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPI 64
Query: 63 KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV 122
K +WDTAGQE+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 65 KFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIP 121
Query: 123 KMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
+L GNKVD +V + + I ++ + + SAK+ N E+ F LA K++ P+L
Sbjct: 122 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 179
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 13 LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
+ FK++L+GD G GK T+GV+ + +K +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72 QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
QE+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
+V + + I ++ + + SAK+ N E+ F LA K++ P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 13 LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
+ FK++L+GD G GK T+GV+ + +K +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72 QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
QE+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 69 QEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
+V + + I ++ + + SAK+ N E+ F LA K++ P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 13 LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
+ FK++L+GD G GK T+GV+ + +K +WDTAG
Sbjct: 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 72 QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
QE+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 62 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 118
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
+V + + I ++ + + SAK+ N E+ F LA K++ P+L
Sbjct: 119 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 167
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 13 LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
+ FK++L+GD G GK T+GV+ + +K +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72 QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
QE+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
+V + + I ++ + + SAK+ N E+ F LA K++ P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 13 LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
+ FK++L+GD G GK T+GV+ + +K +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72 QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
QE+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
+V + + I ++ + + SAK+ N E+ F LA K++ P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI F KL+TV G+ L + DTAGQ+ + +Y G ILVY VT ++F
Sbjct: 37 PTIENTFT-KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEV 95
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + K +D+ Q + MLVGNK D ERV+S EEG ALA+ + FLE SAK +
Sbjct: 96 IKVIHGKLLDMVGKVQIPI-MLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQ 154
Query: 164 NVEQCFEQLALK 175
F ++ L+
Sbjct: 155 TAVDVFRRIILE 166
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI F KL+TV G+ L + DTAGQ+ + +Y G ILVY VT ++F
Sbjct: 37 PTIENTFT-KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEV 95
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + K +D+ Q + MLVGNK D ERV+S EEG ALA+ + FLE SAK +
Sbjct: 96 IKVIHGKLLDMVGKVQIPI-MLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQ 154
Query: 164 NVEQCFEQLALK 175
F ++ L+
Sbjct: 155 TAVDVFRRIILE 166
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI F KL+TV G+ L + DTAGQ+ + +Y G ILVY VT ++F
Sbjct: 32 PTIENTFT-KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEV 90
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + K +D+ Q + MLVGNK D ERV+S EEG ALA+ + FLE SAK +
Sbjct: 91 IKVIHGKLLDMVGKVQIPI-MLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQ 149
Query: 164 NVEQCFEQLALK 175
F ++ L+
Sbjct: 150 TAVDVFRRIILE 161
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI F KL+TV G+ L + DTAGQ+ + +Y G ILVY VT ++F
Sbjct: 35 PTIENTFT-KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEV 93
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + K +D+ Q + MLVGNK D ERV+S EEG ALA+ + FLE SAK +
Sbjct: 94 IKVIHGKLLDMVGKVQIPI-MLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQ 152
Query: 164 NVEQCFEQLALK 175
F ++ L+
Sbjct: 153 TAVDVFRRIILE 164
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 6/171 (3%)
Query: 13 LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
+ FK++L+GD G GK T+GV+ + +K +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72 QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
QE+F L YY AQ I+ +DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
+V + + I ++ + + SAK+ N E+ F LA K++ P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 6/171 (3%)
Query: 13 LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
+ FK++L+GD G GK T+GV+ + +K +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72 QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
QE++ L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 69 QEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
+V + + I ++ + + SAK+ N E+ F LA K++ P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 89/182 (48%), Gaps = 7/182 (3%)
Query: 2 GSSSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGK 60
GS + Q + FK++L+GD G GK T+GV+ +
Sbjct: 1 GSMAAQGEP-QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 59
Query: 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
+K +WDTAG E+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 60 PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCEN 116
Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180
+L GNKVD +V + + I ++ + + SAK+ N E+ F LA K++ P
Sbjct: 117 IPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 174
Query: 181 SL 182
+L
Sbjct: 175 NL 176
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 6/171 (3%)
Query: 13 LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
+ FK++L+GD G GK T+GV+ + +K +WDTAG
Sbjct: 5 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 64
Query: 72 QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
E+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 65 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 121
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
+V + + I ++ + + SAK+ N E+ F LA K++ P+L
Sbjct: 122 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 170
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 80.5 bits (197), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 2/162 (1%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
K++++G GVGK D K + + G+ +++ I DTAG E +
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 68
Query: 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV-GNKVDRDS 134
+ +Y+R +G +LV+ +T E+FT ++ + +++ +D + +LV GNK D +
Sbjct: 69 AAIRDNYFRSGEGFLLVFSITEHESFTATAE-FREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
R V EE + A+E G ++E SAKTR NV++ F L +I
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 2/162 (1%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
K++++G GVGK D K + + G+ +++ I DTAG E +
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 64
Query: 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLV-GNKVDRDS 134
+ +Y+R +G +LV+ +T E+FT ++ + +++ +D + +LV GNK D +
Sbjct: 65 AAIRDNYFRSGEGFLLVFSITEHESFTATAE-FREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
R V EE + A+E G ++E SAKTR NV++ F L +I
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 85/171 (49%), Gaps = 6/171 (3%)
Query: 13 LSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
+ FK++L+GD G GK T+GV+ + +K +WDTAG
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 72 QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
E+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 69 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN-WHR--DLVRVCENIPIVLCGNKVD 125
Query: 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
+V + + I ++ + + SAK+ N E+ F LA K++ P+L
Sbjct: 126 IKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 174
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 15/173 (8%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
S K++L+GD G GK PT+ + + L V GK + L IWDTAGQ
Sbjct: 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNL-QVKGKPVHLHIWDTAGQ 92
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV---------- 122
+ + L +Y A ++L +DVT +F N+ + W EV+ + +
Sbjct: 93 DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 123 -KMLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLA 173
K LV NK+ R+ V+ G +A+ G++ +LECSA+ +NV F++ A
Sbjct: 153 DKSLV-NKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAA 204
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 86/180 (47%), Gaps = 6/180 (3%)
Query: 4 SSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRL 62
S+ +N +FK++L+GD G GK TIGV+ +
Sbjct: 2 SAPAANGEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEI 61
Query: 63 KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV 122
K +WDTAG E+F L YY AQ I+++DVT R T+ N+ + W + DL ++
Sbjct: 62 KFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIP 118
Query: 123 KMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
+L GNKVD +V + + I ++ + + SAK+ N E+ F LA K+ P L
Sbjct: 119 IVLCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 176
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI D K + + +L I DTAGQE F + Y R +G +LV+ VT R +F
Sbjct: 36 PTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEE 94
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + +L+GNK D D +R V++EEG LA++ ++E SAK R
Sbjct: 95 IYK-FQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRM 153
Query: 164 NVEQCFEQL 172
NV+Q F +L
Sbjct: 154 NVDQAFHEL 162
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 1/161 (0%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
K++++G GVGK D K + + G+ +++ I DTAGQE +
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 75
Query: 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135
+ +Y+R +G + V+ +T E+F +D + +++ +++ +LVGNK D + +
Sbjct: 76 AAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 136 RVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
R VS EE A++ ++E SAKTR NV++ F L +I
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 1/161 (0%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
K++++G GVGK D K + + G+ +++ I DTAGQE +
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 79
Query: 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135
+ +Y+R +G + V+ +T E+F +D + +++ +++ +LVGNK D + +
Sbjct: 80 AAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 136 RVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
R VS EE A++ ++E SAKTR NV++ F L +I
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 1/161 (0%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
K++++G GVGK D K + + G+ +++ I DTAGQE +
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 67
Query: 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135
+ +Y+R +G + V+ +T E+F +D + +++ +++ +LVGNK D + +
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 136 RVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
R VS EE A++ ++E SAKTR NV++ F L +I
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+FK++L+GD G GK TIGV+ +K +WDTAG
Sbjct: 5 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 64
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
E+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 65 EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDV 121
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
+V + + I ++ + + SAK+ N E+ F LA K+ P L
Sbjct: 122 KERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 169
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 6/170 (3%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+FK++L+GD G GK TIGV+ +K +WDTAG
Sbjct: 4 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 63
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
E+F L YY AQ I+++DVT R T+ N+ + W + DL ++ +L GNKVD
Sbjct: 64 EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPN-WHR--DLVRVCENIPIVLCGNKVDV 120
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182
+V + + I ++ + + SAK+ N E+ F LA K+ P L
Sbjct: 121 KERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQL 168
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 1/161 (0%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
K++++G GVGK D K + + G+ +++ I DTAGQE +
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135
+ +Y+R +G + V+ +T E+F +D + +++ +++ +LVGNK D + +
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 136 RVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
R VS EE A + ++E SAKTR NV++ F L +I
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 1/161 (0%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
K++++G GVGK D K + + G+ +++ I DTAG E +
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDY 67
Query: 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135
+ +Y+R +G + V+ +T E+F +D + +++ +++ +LVGNK D + +
Sbjct: 68 AAIRDNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 136 RVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
R VS EE A++ ++E SAKTR NV++ F L +I
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K + +GD VGK PT+ +F ++ V G + L +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQED 66
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L YRGA IL + + + ++ N++ W E+ Y+ + LVG K+D RD
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPII--LVGTKLDLRD 124
Query: 134 SERV---------VSREEGIALAKEHGS-LFLECSAKTRENVEQCFEQLALKIMEVP 180
++ ++ +G L K GS +++ECS+KT++NV+ F+ A+K++ P
Sbjct: 125 DKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDA-AIKVVLQP 180
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 91/190 (47%), Gaps = 14/190 (7%)
Query: 6 GQSNSYDLSFKILLIGDSGVGKXXXXX-XXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKL 64
G S K + +GD VGK PT+ +F + V G+ + L
Sbjct: 1 GSHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNL 59
Query: 65 TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
+WDTAGQE + L YRGA +L + + + ++ N+ W E+ ++ N V
Sbjct: 60 GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIV-- 117
Query: 125 LVGNKVD--------RDSERVVSREEGIALAKEHG-SLFLECSAKTRENVEQCFEQLALK 175
LVG K+D D V++ +G L K+ G + ++ECS+KT++NV+ F+ A+K
Sbjct: 118 LVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDT-AIK 176
Query: 176 IMEVPSLLEE 185
++ P +E
Sbjct: 177 VVLQPPRRKE 186
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 4/163 (2%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
+K++++G GVGK PTI ++ K + + G+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
+ + Y R +G + V+ + ++F ++ + +++ ++D +LVGNK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP 122
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
S R V ++ LA+ +G F+E SAKTR+ V+ F L +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 83/163 (50%), Gaps = 4/163 (2%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
+K++++G GVGK PTI ++ K + + G+ L I DTAGQE
Sbjct: 5 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 63
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
+ + Y R +G + V+ + ++F ++ + +++ ++D +LVGNK D
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKSDLP 122
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
S R V ++ LA+ +G F+E SAKTR+ V+ F L +I
Sbjct: 123 S-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 69/118 (58%), Gaps = 5/118 (4%)
Query: 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
+K IWDTAGQER+ ++ YYRGA I+V+D++ T + + W ++ + S +
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTL-DRAKTWVNQLKISS---N 147
Query: 121 CVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178
+ +LV NK+D++ +V E A+++ LF++ SAKT N++ F LA +I +
Sbjct: 148 YIIILVANKIDKNKFQVDILEVQ-KYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 17/190 (8%)
Query: 2 GSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGK 60
G SS L K +++GD VGK PT+ + + + TV GK
Sbjct: 6 GRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV-TVGGK 64
Query: 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
+ L ++DTAGQE + L Y ++ + V +F N+ + W E+ Y+ N
Sbjct: 65 QYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVP 124
Query: 121 CVKMLVGNKVD-RDSERVVSR-----------EEGIALAKEHGS-LFLECSAKTRENVEQ 167
+L+G ++D RD + ++R E+G LAKE G+ ++ECSA T++ ++
Sbjct: 125 --FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 182
Query: 168 CFEQLALKIM 177
F++ + I+
Sbjct: 183 VFDEAIIAIL 192
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
+K++++G GVGK PTI ++ K + + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
+ + Y R +G + V+ + ++F ++ + +++ + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
+ V SR + LA+ +G ++E SAKTR+ VE F L +I
Sbjct: 122 ARTVESR-QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y I++ + + ++ N+ + W EV + N + LVGNK D R+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
E V EEG +A G+ ++ECSAKT++ V + FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 17/179 (9%)
Query: 6 GQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKL 64
G S + K++++GD GK PT+ ++ + + V GK+++L
Sbjct: 1 GPLGSAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVEL 59
Query: 65 TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124
+WDTAGQE + L Y I++ + + ++ N+ + W EV + N +
Sbjct: 60 ALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII-- 117
Query: 125 LVGNKVD-RDSERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
LVGNK D R+ E V EEG +A G+ ++ECSAKT++ V + FE
Sbjct: 118 LVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 176
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y I++ + + ++ N+ + W EV + N + LVGNK D R+
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 121
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
E V EEG +A G+ ++ECSAKT++ V + FE
Sbjct: 122 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
+K++++G GVGK PTI ++ K + + G+ L I DTAGQE
Sbjct: 4 YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
+ + Y R +G + V+ + ++F ++ + +++ + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
+ V SR + LA+ +G ++E SAKTR+ VE F L +I
Sbjct: 122 ARTVESR-QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 63
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y I++ + + ++ N+ + W EV + N + LVGNK D R+
Sbjct: 64 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 121
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
E V EEG +A G+ ++ECSAKT++ V + FE
Sbjct: 122 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y I++ + + ++ N+ + W EV + N + LVGNK D R+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
E V EEG +A G+ ++ECSAKT++ V + FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 86/177 (48%), Gaps = 16/177 (9%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K + +GD VGK PT+ +F ++ V G + L +WDTAGQE
Sbjct: 8 KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQED 66
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L YRGA +L + + + ++ N+ W E+ Y+ V LVG K+D RD
Sbjct: 67 YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIV--LVGTKLDLRD 124
Query: 134 SERVVSREEGIA---------LAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEVP 180
++ + G A L K G++ +LECS+KT++NV+ F+ A+++ P
Sbjct: 125 DKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDT-AIRVALRP 180
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y I++ + + ++ N+ + W EV + N + LVGNK D R+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
E V EEG +A G+ ++ECSAKT++ V + FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y I++ + + ++ N+ + W EV + N + LVGNK D R+
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 124
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
E V EEG +A G+ ++ECSAKT++ V + FE
Sbjct: 125 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 16/177 (9%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K + +GD VGK PT+ +F ++ V G + L +WDTAGQE
Sbjct: 10 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQED 68
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L YRGA IL + + + ++ N+S W E+ Y+ V LVG K+D RD
Sbjct: 69 YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIV--LVGTKLDLRD 126
Query: 134 SERV---------VSREEGIALAKEHGS-LFLECSAKTRENVEQCFEQLALKIMEVP 180
++ ++ +G L K G+ ++ECS+K++ENV+ F+ A++++ P
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA-AIRVVLQP 182
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y I++ + + ++ N+ + W EV + N + LVGNK D R+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
E V EEG +A G+ ++ECSAKT++ V + FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y I++ + + ++ N+ + W EV + N + LVGNK D R+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
E V EEG +A G+ ++ECSAKT++ V + FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 4/163 (2%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
+K++++G GVGK PTI ++ K + + G+ L I DTAGQE
Sbjct: 4 YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
+ + Y R +G + V+ + ++F ++ + +++ + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
+ V SR + LA+ +G ++E SAKTR+ VE F L +I
Sbjct: 122 ARTVESR-QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 52 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFAD 110
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ +++ +++ + D +LVGNK D + R V ++ LAK +G F+E SAKTR+
Sbjct: 111 I-NLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQ 168
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 169 GVEDAFYTLVREI 181
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 4/163 (2%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXX-XXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
+K++++G GVGK PTI ++ K + + G+ L I DTAGQE
Sbjct: 4 YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE 62
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
+ + Y R +G + V+ + ++F ++ + +++ + D +LVGNK D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKCDLA 121
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
V SR + LA+ +G ++E SAKTR+ VE F L +I
Sbjct: 122 GRTVESR-QAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y I++ + + ++ N+ + W EV + N + LVGNK D R+
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
E V EEG +A G+ ++ECSAKT++ V + FE
Sbjct: 124 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 9 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 67
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y I++ + + ++ N+ + W EV + N + LVGNK D R+
Sbjct: 68 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 125
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
E V EEG +A G+ ++ECSAKT++ V + FE
Sbjct: 126 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 10 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 68
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y I++ + + ++ N+ + W EV + N + LVGNK D R+
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 126
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
E V EEG +A G+ ++ECSAKT++ V + FE
Sbjct: 127 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 8 KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 66
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y I++ + + ++ N+ + W EV + N + LVGNK D R+
Sbjct: 67 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 124
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
E V EEG +A G+ ++ECSAKT++ V + FE
Sbjct: 125 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ I + V GK+++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y I++ + + ++ N+ + W EV + N + LVGNK D R
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPII--LVGNKKDLRQ 143
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
E V EEG +A + +LECSAKT+E V + FE
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ I + V GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 65
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y I++ + + ++ N+ + W EV + N + LVGNK D R
Sbjct: 66 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRQ 123
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
E V EEG +A + +LECSAKT+E V + FE
Sbjct: 124 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ I + V GK+++L +WDTAGQE
Sbjct: 27 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-IADIEVDGKQVELALWDTAGQED 85
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y I++ + + ++ N+ + W EV + N + LVGNK D R
Sbjct: 86 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRQ 143
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
E V EEG +A + +LECSAKT+E V + FE
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ + + V GK+++L +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGLED 68
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y I++ + + ++ N+ + W EV + N + LVGNK D R+
Sbjct: 69 YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 126
Query: 134 SERV-----------VSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
E V EEG +A G+ ++ECSAKT++ V + FE
Sbjct: 127 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ + + V GK+++L +WDTAGQE
Sbjct: 7 KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENY-VADIEVDGKQVELALWDTAGQED 65
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
+ Y I++ + + ++ N+ + W EV + N + LVGNK D +
Sbjct: 66 YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII--LVGNKKDLRN 123
Query: 135 ERVVSRE------------EGIALAKEHGSL-FLECSAKTRENVEQCFE 170
+ +RE EG +A G+ ++ECSAKT++ V + FE
Sbjct: 124 DEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 2 GSSSGQSNSYDLSF---KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTV 57
G G N Y S K++++GD GK PT+ ++ + + V
Sbjct: 10 GVDLGTENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEV 68
Query: 58 AGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYST 117
GK+++L +WDTAGQE + L Y I++ + V ++ N+ + W EV +
Sbjct: 69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP 128
Query: 118 NQDCVKMLVGNKVD-RDSERV-----------VSREEGIALA-KEHGSLFLECSAKTREN 164
N + LV NK D R E V V ++G A+A + +LECSAKT+E
Sbjct: 129 NVPII--LVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEG 186
Query: 165 VEQCFE 170
V + FE
Sbjct: 187 VREVFE 192
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 35 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 93
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ ++D +LVGNK D S R V ++ LA+ +G F+E SAKTR+
Sbjct: 94 IHH-YREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQ 151
Query: 164 NVEQCFEQLALKI 176
V+ F L +I
Sbjct: 152 GVDDAFYTLVREI 164
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 72/133 (54%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 35 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 93
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ ++D +LVGNK D S R V ++ LA+ +G F+E SAKTR+
Sbjct: 94 IHH-YREQIKRVKDSEDVPMVLVGNKSDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQ 151
Query: 164 NVEQCFEQLALKI 176
V+ F L +I
Sbjct: 152 GVDDAFYTLVREI 164
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 18/168 (10%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211
VE F L +I + + K P ++S P GC S
Sbjct: 151 GVEDAFYTLVREIRQ-------------HKLRKLNPPDESGP--GCMS 183
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEV 179
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++ ++
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 180 PSL 182
P +
Sbjct: 180 PPV 182
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEV 179
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++ ++
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 180 PSL 182
P +
Sbjct: 180 PPV 182
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 41 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 99
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 100 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 157
Query: 164 NVEQCFEQLALKIME 178
VE F L +I +
Sbjct: 158 GVEDAFYTLVREIRQ 172
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 39 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 97
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 98 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 155
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 156 GVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 39 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 97
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 98 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 155
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 156 GVEDAFYTLVREI 168
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAG E + + Y R +G + V+ + ++F +
Sbjct: 52 PTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 110
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ ++D +LVGNK D S R V ++ LA+ +G F+E SAKTR+
Sbjct: 111 IHH-YREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQ 168
Query: 164 NVEQCFEQLALKI 176
V+ F L +I
Sbjct: 169 GVDDAFYTLVREI 181
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 63
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 121
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEV 179
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++ ++
Sbjct: 122 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 181
Query: 180 PSL 182
P +
Sbjct: 182 PPV 184
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEV 179
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++ ++
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 180 PSL 182
P +
Sbjct: 180 PPV 182
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEESYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PT+ + K++T+ L + DTAGQ+ + L S+ G G +LVY VT +F
Sbjct: 55 PTVENTYS-KIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQV 113
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ ++ K + + + V +LVGNK D ER V EG LA+ G+ F+E SA+ +
Sbjct: 114 IESLYQKLHEGHGKTRVPV-VLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQ 172
Query: 164 NVEQCFEQLALKIMEV 179
+ F ++ +I V
Sbjct: 173 LTQGIFTKVIQEIARV 188
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 7/175 (4%)
Query: 1 MGSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAG 59
M + +G+ + + KI+++GD VGK PT+ +F ++
Sbjct: 10 MNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKN 68
Query: 60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
+ L +WDTAGQE + L Y + ++L + V R +F N+S W E+ Y
Sbjct: 69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA 128
Query: 120 DCVKMLVGNKVD--RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
V LVG KVD +D V+++EG L ++ G + ++E S+ + + + FE+
Sbjct: 129 KTV--LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEV 179
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++ ++
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 180 PSL 182
P +
Sbjct: 180 PPV 182
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 17/183 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 7 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 65
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 66 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 123
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEV 179
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++ ++
Sbjct: 124 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 183
Query: 180 PSL 182
P +
Sbjct: 184 PPV 186
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 88
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 146
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++
Sbjct: 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 86/182 (47%), Gaps = 19/182 (10%)
Query: 4 SSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRL 62
SSG S + K +++GD VGK PT+ ++ ++ V GK +
Sbjct: 2 SSGSSGMQ--AIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPV 58
Query: 63 KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV 122
L +WDTAGQE + L Y ++ + + +F N+ W EV + N +
Sbjct: 59 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII 118
Query: 123 KMLVGNKVD-RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCF 169
LVG K+D RD + + + +G+A+AKE G++ +LECSA T+ ++ F
Sbjct: 119 --LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 176
Query: 170 EQ 171
++
Sbjct: 177 DE 178
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 88
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 146
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++
Sbjct: 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKSDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKSDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI DF K + V L I DTAG E+F ++ Y + QG ILVY + +++F +
Sbjct: 34 PTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQD 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + + + + + V +LVGNKVD +SER VS EG ALA+E G F+E SAK++
Sbjct: 93 IKPMRDQIIRVKRYEKVPV-ILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKT 151
Query: 164 NVEQCFEQLA 173
V++ F ++
Sbjct: 152 MVDELFAEIV 161
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 22 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 80
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 81 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 138
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++
Sbjct: 139 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 190
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 13 AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 71
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 72 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 129
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++
Sbjct: 130 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 181
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 7/175 (4%)
Query: 1 MGSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAG 59
M + +G+ + + KI+++GD VGK PT+ +F ++
Sbjct: 9 MNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKN 67
Query: 60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
+ L +WDTAGQE + L Y + ++L + V R +F N+S W E+ Y
Sbjct: 68 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTA 127
Query: 120 DCVKMLVGNKVD--RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
V LVG KVD +D V+++EG L ++ G + ++E S+ + + + FE+
Sbjct: 128 KTV--LVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 180
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
P+I ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 40 PSIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 98
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 99 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 156
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 157 GVEDAFYTLVREI 169
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 5/172 (2%)
Query: 7 QSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLT 65
QS + K+ + G +GVGK PT+ ++ + T+ + + +
Sbjct: 21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQA-TIDDEVVSME 79
Query: 66 IWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKML 125
I DTAGQE + R +G +LVYD+T R +F + + +D ++ +L
Sbjct: 80 ILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPL-KNILDEIKKPKNVTLIL 137
Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE-NVEQCFEQLALKI 176
VGNK D D R VS EEG LA E F ECSA T E N+ + F +L ++
Sbjct: 138 VGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 4 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 62
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + + +LVG K+D
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDL 120
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
RD + + R +G+A+A+E GS+ +LECSA T+ ++ F++
Sbjct: 121 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 4 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 62
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + + +LVG K+D
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDL 120
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
RD + + R +G+A+A+E GS+ +LECSA T+ ++ F++
Sbjct: 121 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGN+ D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNRCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 69/129 (53%), Gaps = 3/129 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQL 172
VE F L
Sbjct: 151 GVEDAFYTL 159
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + + +LVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPI--LLVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
RD + + R +G+A+A+E GS+ +LECSA T+ ++ F++
Sbjct: 120 RDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 171
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
P+I ++ K + + G+ L I DTAGQE + + Y R +G + V+ + ++F +
Sbjct: 34 PSIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DT GQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAG E + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAG+E + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAG
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEV 179
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++ ++
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 180 PSL 182
P +
Sbjct: 180 PPV 182
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DT GQE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTA QE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKXDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAG
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEV 179
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++ ++
Sbjct: 120 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCP 179
Query: 180 PSL 182
P +
Sbjct: 180 PPV 182
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTA QE + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKXDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAGQE + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAG E + + Y R +G + V+ + ++F +
Sbjct: 39 PTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 97
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 98 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 155
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 156 GVEDAFYTLVREI 168
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAG E + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAG
Sbjct: 6 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 64
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 65 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 122
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++
Sbjct: 123 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 174
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAG E + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 17/172 (9%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAG
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGL 88
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + +F N+ W EV + N + LVG K+D
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPII--LVGTKLDL 146
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
RD + + + +G+A+AKE G++ +LECSA T+ ++ F++
Sbjct: 147 RDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAG E + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAG E + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI ++ K + + G+ L I DTAG E + + Y R +G + V+ + ++F +
Sbjct: 34 PTIEDSYR-KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ + +++ + D +LVGNK D + V SR + LA+ +G ++E SAKTR+
Sbjct: 93 IHQ-YREQIKRVKDSDDVPMVLVGNKCDLAARTVESR-QAQDLARSYGIPYIETSAKTRQ 150
Query: 164 NVEQCFEQLALKI 176
VE F L +I
Sbjct: 151 GVEDAFYTLVREI 163
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 2/159 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
+++ + G GVGK PT+ ++ ++++ L I DT G
Sbjct: 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSH 62
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
+F + ILVY +T R++ L ++ + ++ + MLVGNK D
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
R V E ALA+ F+E SAK NV++ F++L
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 15/168 (8%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
K +L+GD VGK D +++V G+ ++L + DTAGQ+ F
Sbjct: 22 KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEF 81
Query: 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVD---------LYSTNQDC---VK 123
L Y +L + V +F N+S+ W E+ L T D VK
Sbjct: 82 DKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVK 141
Query: 124 MLVGNKVDRDSERVVSREEGIALAKE-HGSLFLECSAKTRENVEQCFE 170
+L+ ++D+ E+ V E LA+E + ++ECSA T++N+++ F+
Sbjct: 142 VLI--ELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFD 187
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 17/169 (10%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++++GD GK PT+ ++ + + V G+R++L +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENY-VADVEVDGRRVELALWDTAGQED 70
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD--- 131
+ L Y + +++ + + ++ N+ + W EV + Q +LVG KVD
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC--QGVPIILVGCKVDLRN 128
Query: 132 ---------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170
++ ++ V+ +EG ++A + G+ + ECSAKT V + FE
Sbjct: 129 DPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFE 177
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 76/160 (47%), Gaps = 7/160 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
++++L+GD GVGK +G D + LTV G+ L + DT E+
Sbjct: 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 75 FRTLTS--SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ-DCVKM-LVGNKV 130
S S +G ++VY + R +F + S++ + L T+Q D V + LVGNK
Sbjct: 65 LDKSWSQESCLQGGSAYVIVYSIADRGSFESASEL---RIQLRRTHQADHVPIILVGNKA 121
Query: 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170
D R VS EEG A A F+E SA + NV + FE
Sbjct: 122 DLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI D +K + + L + DTAGQE F + Y R G ++VY VT + +F +
Sbjct: 49 PTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEH 107
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ D + + + + +LV NKVD R V+R++G +A ++ ++E SAK
Sbjct: 108 V-DRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPP 166
Query: 164 -NVEQCFEQL 172
NV++ F L
Sbjct: 167 LNVDKTFHDL 176
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K +++GD VGK PT+ ++ ++ V GK + L +WDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y ++ + + +F ++ W EV + N + LVG K+D RD
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDLRD 273
Query: 134 SERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEVP 180
+ + + +G+A+AKE G++ +LECSA T+ ++ F++ ++ P
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 332
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI D +K + + L + DTAGQE F + Y R G ++VY VT + +F +
Sbjct: 49 PTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEH 107
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ D + + + + +LV NKVD R V+R++G +A ++ ++E SAK
Sbjct: 108 V-DRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPP 166
Query: 164 -NVEQCFEQL 172
NV++ F L
Sbjct: 167 LNVDKTFHDL 176
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K +++GD VGK PT+ ++ ++ V GK + L +WDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y ++ + + +F ++ W EV + N + LVG K+D RD
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDLRD 273
Query: 134 SERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEVP 180
+ + + +G+A+AKE G++ +LECSA T+ ++ F++ ++ P
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 332
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 16 KILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K +++GD VGK PT+ ++ ++ V GK + L +WDTAG E
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLED 215
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD-RD 133
+ L Y ++ + + +F ++ W EV + N + LVG K+D RD
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPII--LVGTKLDLRD 273
Query: 134 SERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKIMEVP 180
+ + + +G+A+AKE G++ +LECSA T+ ++ F++ ++ P
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 332
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN 103
PTI D +K + + L + DTAGQE F + Y R G ++VY VT + +F +
Sbjct: 44 PTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEH 102
Query: 104 LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163
+ D + + + + +LV NKVD R V+R++G +A ++ ++E SAK
Sbjct: 103 V-DRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPP 161
Query: 164 -NVEQCFEQL 172
NV++ F L
Sbjct: 162 LNVDKTFHDL 171
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 64 LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK 123
L I DT G +F + ILV+ VT +++ L ++ V + + +D
Sbjct: 58 LQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV 117
Query: 124 MLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
MLVGNK D +++R V E A+A+E F+E SAK NV++ F++L
Sbjct: 118 MLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQEL 165
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 64 LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK 123
L + DTAGQE F + Y R G ++VY VT + +F ++ D + + + +
Sbjct: 68 LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHV-DRFHQLILRVKDRESFPM 126
Query: 124 MLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE-NVEQCFEQL 172
+LV NKVD R V+R++G +A ++ ++E SAK NV++ F L
Sbjct: 127 ILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 36/202 (17%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V GK + L +WDTAGQ
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQ 63
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRR-------------------ETFTNLSDVWAKEVD 113
E + L Y G D+T R +F N+ W EV
Sbjct: 64 EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 114 LYSTNQDCVKMLVGNKVD-RDSERVVSR-----------EEGIALAKEHGSL-FLECSAK 160
+ N + LVG K+D RD + + + +G+A+AKE G++ +LECSA
Sbjct: 124 HHCPNTPII--LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 181
Query: 161 TRENVEQCFEQLALKIMEVPSL 182
T+ ++ F++ ++ P +
Sbjct: 182 TQRGLKTVFDEAIRAVLCPPPV 203
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 90/197 (45%), Gaps = 24/197 (12%)
Query: 1 MGSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAG 59
MGSS + + K +++GD VGK PT+ ++ + ++ + G
Sbjct: 1 MGSSHHHHHHMQ-TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGG 58
Query: 60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
+ L ++DTAGQE + L Y ++ + V +F N+ + W E+
Sbjct: 59 EPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----TH 113
Query: 120 DCVK---MLVGNKVD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRE 163
C K +LVG ++D ++ ++ ++ E LA++ ++ ++ECSA T++
Sbjct: 114 HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQK 173
Query: 164 NVEQCFEQLALKIMEVP 180
++ F++ L +E P
Sbjct: 174 GLKNVFDEAILAALEPP 190
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 18/189 (9%)
Query: 16 KILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++L+GD GK PT+ ++ L T +R++L++WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET-EEQRVELSLWDTSGSPY 71
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD--- 131
+ + Y + ++L +D++R ET + W E+ Y + +L+G K D
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTDLRT 129
Query: 132 ---------RDSERVVSREEGIALAKEHGS-LFLECSAKTRE-NVEQCFEQLALKIMEVP 180
+ +S E+G A+AK+ G+ ++LE SA T E ++ F ++ + P
Sbjct: 130 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 189
Query: 181 SLLEEGSNV 189
S L + S V
Sbjct: 190 SPLPQKSPV 198
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 18/189 (9%)
Query: 16 KILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++L+GD GK PT+ ++ L T +R++L++WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET-EEQRVELSLWDTSGSPY 87
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD--- 131
+ + Y + ++L +D++R ET + W E+ Y + +L+G K D
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTDLRT 145
Query: 132 ---------RDSERVVSREEGIALAKEHGS-LFLECSAKTRE-NVEQCFEQLALKIMEVP 180
+ +S E+G A+AK+ G+ ++LE SA T E ++ F ++ + P
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205
Query: 181 SLLEEGSNV 189
S L + S V
Sbjct: 206 SPLPQKSPV 214
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 18/189 (9%)
Query: 16 KILLIGDSGVGKXXXXXXXXX-XXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
K++L+GD GK PT+ ++ L T +R++L++WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLET-EEQRVELSLWDTSGSPY 70
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD--- 131
+ + Y + ++L +D++R ET + W E+ Y + +L+G K D
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTR--VLLIGCKTDLRT 128
Query: 132 ---------RDSERVVSREEGIALAKEHGS-LFLECSAKTRE-NVEQCFEQLALKIMEVP 180
+ +S E+G A+AK+ G+ ++LE SA T E ++ F ++ + P
Sbjct: 129 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 188
Query: 181 SLLEEGSNV 189
S L + S V
Sbjct: 189 SPLPQKSPV 197
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 17/172 (9%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ ++ V K + L +WDTAGQ
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSKPVNLGLWDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD- 131
E + L Y ++ + + ++ N+ W EV + + + LVG K+D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII--LVGTKLDL 119
Query: 132 RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQCFEQ 171
RD + + + +G+ALAKE S+ +LECSA T+ ++ F++
Sbjct: 120 RDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 171
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 21/184 (11%)
Query: 2 GSSSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXX-XXXPTIGVDFKIKLLTVAGK 60
G SG S + K +++GD VGK PT+ ++ ++ V K
Sbjct: 1 GGGSGGSQA----IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSK 55
Query: 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
+ L +WDTAGQE + L Y ++ + + ++ N+ W EV + +
Sbjct: 56 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTP 115
Query: 121 CVKMLVGNKVD-RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQ 167
+ LVG K+D RD + + + +G+ALAKE S+ +LECSA T+ ++
Sbjct: 116 II--LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKT 173
Query: 168 CFEQ 171
F++
Sbjct: 174 VFDE 177
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 87/188 (46%), Gaps = 23/188 (12%)
Query: 10 SYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWD 68
S+ + K +++GD VGK PT+ ++ + ++ + G+ L ++D
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFD 60
Query: 69 TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---ML 125
TAGQE + L Y ++ + V +F N+ + W E+ C K +L
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLL 115
Query: 126 VGNKVD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQL 172
VG ++D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++
Sbjct: 116 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 175
Query: 173 ALKIMEVP 180
L +E P
Sbjct: 176 ILAALEPP 183
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 87/188 (46%), Gaps = 23/188 (12%)
Query: 10 SYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWD 68
S+ + K +++GD VGK PT+ ++ + ++ + G+ L ++D
Sbjct: 2 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFD 60
Query: 69 TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---ML 125
TAGQE + L Y ++ + V +F N+ + W E+ C K +L
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLL 115
Query: 126 VGNKVD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQL 172
VG ++D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++
Sbjct: 116 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 175
Query: 173 ALKIMEVP 180
L +E P
Sbjct: 176 ILAALEPP 183
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 87/188 (46%), Gaps = 23/188 (12%)
Query: 10 SYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWD 68
S+ + K +++GD VGK PT+ ++ + ++ + G+ L ++D
Sbjct: 1 SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFD 59
Query: 69 TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---ML 125
TAGQE + L Y ++ + V +F N+ + W E+ C K +L
Sbjct: 60 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLL 114
Query: 126 VGNKVD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQL 172
VG ++D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++
Sbjct: 115 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 174
Query: 173 ALKIMEVP 180
L +E P
Sbjct: 175 ILAALEPP 182
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+IL++G GK PTIG + + TV K + T+WD GQ+R
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNICFTVWDVGGQDR 73
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
R L Y++ QG+I V D RE ++D K + L +D V +L NK D +
Sbjct: 74 IRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKML-LVDELRDAVLLLFANKQDLPN 132
Query: 135 ERVVS 139
+S
Sbjct: 133 AMAIS 137
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 23/184 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L ++DTAGQ
Sbjct: 10 TIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 68
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 69 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 123
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 124 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 183
Query: 177 MEVP 180
+E P
Sbjct: 184 LEPP 187
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 20/184 (10%)
Query: 2 GSSSGQSNSYDLSFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGK 60
G SG S + K +++GD VGK PT+ ++ ++ V K
Sbjct: 1 GGGSGGSMQ---AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVM-VDSK 56
Query: 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD 120
+ L +WDTAGQE + L Y ++ + + ++ N+ W EV + +
Sbjct: 57 PVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTP 116
Query: 121 CVKMLVGNKVD-RDSERVVSR-----------EEGIALAKEHGSL-FLECSAKTRENVEQ 167
+ LVG K+D RD + + + +G+ALAKE S+ +LECSA T+ ++
Sbjct: 117 II--LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKT 174
Query: 168 CFEQ 171
F++
Sbjct: 175 VFDE 178
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 23/184 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L ++DTAGQ
Sbjct: 10 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 68
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 69 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 123
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 124 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 183
Query: 177 MEVP 180
+E P
Sbjct: 184 LEPP 187
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 23/184 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L ++DTAGQ
Sbjct: 4 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 62
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 63 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 117
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 118 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 177
Query: 177 MEVP 180
+E P
Sbjct: 178 LEPP 181
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 23/184 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 MEVP 180
+E P
Sbjct: 177 LEPP 180
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 23/184 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 MEVP 180
+E P
Sbjct: 177 LEPP 180
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 23/184 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 MEVP 180
+E P
Sbjct: 177 LEPP 180
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 85/184 (46%), Gaps = 23/184 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 MEVP 180
+E P
Sbjct: 177 LEPP 180
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 13/121 (10%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+IL++G G GK PTIG + + TV K + T+WD GQ+R
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVE----TVQYKNISFTVWDVGGQDR 73
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD----CVKMLVGNKV 130
R+L YYR +G+I V D R A+EV N+D V ++ NK
Sbjct: 74 IRSLWRHYYRNTEGVIFVIDSNDRSRIGE-----AREVMQRMLNEDELRNAVWLVFANKQ 128
Query: 131 D 131
D
Sbjct: 129 D 129
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 1 MGSSSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXX-XXXXXXPTIGVDFKIKLLTVAG 59
+ S S + ++ KI+++GDS GK PT+ ++ +
Sbjct: 10 LSSKSIMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDT 68
Query: 60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119
+R++L++WDT+G + + Y + +++ +D++R ET ++ W E+ + N
Sbjct: 69 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNT 128
Query: 120 DCVKMLVGNKVD------------RDSERVVSREEGIALAKEHG-SLFLECSAKTREN 164
+LVG K D + VS ++G +AK+ G + ++ECSA EN
Sbjct: 129 K--MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 84/184 (45%), Gaps = 23/184 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + + + G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTV-XIGGEPYTLGLFDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 MEVP 180
+E P
Sbjct: 177 LEPP 180
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 16 KILLIGDSGVGKXXXXXXXXXX-XXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
KI+++GDS GK PT+ ++ + +R++L++WDT+G
Sbjct: 30 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 88
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD--- 131
+ + Y + +++ +D++R ET ++ W E+ + N +LVG K D
Sbjct: 89 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 146
Query: 132 ---------RDSERVVSREEGIALAKEHG-SLFLECSAKTREN 164
+ VS ++G +AK+ G + ++ECSA EN
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 17/163 (10%)
Query: 16 KILLIGDSGVGKXXXXXXXXXX-XXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
KI+++GDS GK PT+ ++ + +R++L++WDT+G
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSPY 67
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD--- 131
+ + Y + +++ +D++R ET ++ W E+ + N +LVG K D
Sbjct: 68 YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRT 125
Query: 132 ---------RDSERVVSREEGIALAKEHG-SLFLECSAKTREN 164
+ VS ++G +AK+ G + ++ECSA EN
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+IL++G G GK PTIG + + TV K + T+WD GQ+R
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVE----TVQYKNISFTVWDVGGQDR 56
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK----MLVGNKV 130
R+L YYR +G+I V D R A+EV N+D ++ ++ NK
Sbjct: 57 IRSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQ 111
Query: 131 D 131
D
Sbjct: 112 D 112
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 13/120 (10%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
+IL++G G GK PTIG + + TV K + T+WD GQ+R
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVE----TVQYKNISFTVWDVGGQDRI 74
Query: 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK----MLVGNKVD 131
R+L YYR +G+I V D R A+EV N+D ++ ++ NK D
Sbjct: 75 RSLWRHYYRNTEGVIFVVDSNDRSRIGE-----AREVMQRMLNEDELRNAAWLVFANKQD 129
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 84/182 (46%), Gaps = 23/182 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 ME 178
+E
Sbjct: 177 LE 178
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 84/182 (46%), Gaps = 23/182 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L ++DTAGQ
Sbjct: 7 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 65
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 120
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 121 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 180
Query: 177 ME 178
+E
Sbjct: 181 LE 182
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 84/182 (46%), Gaps = 23/182 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L ++DTAGQ
Sbjct: 5 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 63
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 64 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 118
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 119 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 178
Query: 177 ME 178
+E
Sbjct: 179 LE 180
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 84/182 (46%), Gaps = 23/182 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 ME 178
+E
Sbjct: 177 LE 178
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 84/182 (46%), Gaps = 23/182 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 ME 178
+E
Sbjct: 177 LE 178
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 23/182 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T+ ++ F++ L
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAA 176
Query: 177 ME 178
+E
Sbjct: 177 LE 178
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 84/184 (45%), Gaps = 23/184 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L ++DTAG
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGL 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 MEVP 180
+E P
Sbjct: 177 LEPP 180
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 84/184 (45%), Gaps = 23/184 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L ++DTAG
Sbjct: 7 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGL 65
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 120
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 121 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 180
Query: 177 MEVP 180
+E P
Sbjct: 181 LEPP 184
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 83/182 (45%), Gaps = 23/182 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK P + ++ + ++ + G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 ME 178
+E
Sbjct: 177 LE 178
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+IL++G GK PT+G + + TV K +K +WD GQ++
Sbjct: 323 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 378
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
R L YY G QG+I V D R+
Sbjct: 379 IRPLWRHYYTGTQGLIFVVDCADRD 403
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 83/182 (45%), Gaps = 23/182 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L + DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLRDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T++ ++ F++ L
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176
Query: 177 ME 178
+E
Sbjct: 177 LE 178
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 6/164 (3%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+K+LL+G GVGK G + + + V G+ L ++D Q+
Sbjct: 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDG 61
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ--DCVKMLVGNKVDR 132
R L ++VY VT + +F S++ V L Q D +LVGNK D
Sbjct: 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSDL 118
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
R VS +EG A A F+E SA NV+ FE + +I
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 82/181 (45%), Gaps = 23/181 (12%)
Query: 14 SFKILLIGDSGVGKX-XXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ K +++GD VGK PT+ ++ + ++ + G+ L ++DTAGQ
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVM-IGGEPYTLGLFDTAGQ 61
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK---MLVGNK 129
E + L Y ++ + V +F N+ + W E+ C K +LVG +
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-----THHCPKTPFLLVGTQ 116
Query: 130 VD------------RDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFEQLALKI 176
+D ++ ++ ++ E LA++ ++ ++ECSA T+ ++ F++ L
Sbjct: 117 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAA 176
Query: 177 M 177
+
Sbjct: 177 L 177
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 6/164 (3%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+K+LL+G GVGK G + + + V G+ L ++D Q+
Sbjct: 8 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDG 66
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ--DCVKMLVGNKVDR 132
R L ++VY VT + +F S++ V L Q D +LVGNK D
Sbjct: 67 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSDL 123
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
R VS +EG A A F+E SA NV+ FE + +I
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 6/164 (3%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+K+LL+G GVGK G + + + V G+ L ++D Q+
Sbjct: 8 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDG 66
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ--DCVKMLVGNKVDR 132
R L ++VY VT + +F S++ V L Q D +LVGNK D
Sbjct: 67 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASEL---RVQLRRARQTDDVPIILVGNKSDL 123
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
R VS +EG A A F+E SA NV+ FE + +I
Sbjct: 124 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+IL++G GK PT+G + + TV K +K +WD GQ++
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 56
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
R L YY G QG+I V D R+
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRD 81
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+IL++G GK PT+G + + TV K +K +WD GQ++
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 68
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
R L YY G QG+I V D R+
Sbjct: 69 IRPLWRHYYTGTQGLIFVVDCADRD 93
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+,
And Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+IL++G GK PT+G + + TV K +K +WD GQ++
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 69
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
R L YY G QG+I V D R+
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRD 94
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+IL++G GK PT+G + + TV K +K +WD GQ++
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDK 56
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
R L YY G QG+I V D R+
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDCADRD 81
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+IL++G GK PTIG + + TV K + T+WD GQ++
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDK 221
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
R L Y++ QG+I V D RE
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRE 246
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+IL++G GK PTIG + + TV K + T+WD GQ++
Sbjct: 30 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNICFTVWDVGGQDK 85
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134
R L Y++ QG+I V D RE +D K + +D V ++ NK D +
Sbjct: 86 IRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ-EDELRDAVLLVFANKQDMPN 144
Query: 135 ERVVS 139
VS
Sbjct: 145 AMPVS 149
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed
With Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain
Carrying The Mutation Of The Catalytic Glutamate To
Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+IL++G GK PTIG + + TV K + T+WD GQ++
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDK 56
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
R L Y++ QG+I V D RE
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDRE 81
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Monomeric Crystal Form
Length = 181
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
+IL++G GK PTIG + + TV K + T+WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKI 74
Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
R L Y++ QG+I V D RE
Sbjct: 75 RPLWRHYFQNTQGLIFVVDSNDRE 98
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
+IL++G GK PTIG + + TV K + T+WD GQ++
Sbjct: 18 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKI 73
Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
R L Y++ QG+I V D RE
Sbjct: 74 RPLWRHYFQNTQGLIFVVDSNDRE 97
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 67/164 (40%), Gaps = 14/164 (8%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+IL++G G GK PTIG + + T++ K LKL +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLSYKNLKLNVWDLGGQTS 74
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTN---QDCVKMLVGNKVD 131
R YY +I V D T ++ + S KE+ L QD ++ NK D
Sbjct: 75 IRPYWRCYYADTAAVIFVVDSTDKDRMSTAS----KELHLMLQEEELQDAALLVFANKQD 130
Query: 132 RD---SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172
+ S VS+E + K+ + SA E + + + L
Sbjct: 131 QPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL 174
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
+IL++G GK PTIG + + TV K + T+WD GQ++
Sbjct: 22 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDKI 77
Query: 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131
R L Y++ QG+I V D R+ D + ++ +D V ++ NK D
Sbjct: 78 RPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLN-EDELRDAVLLVFANKQD 132
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 15/178 (8%)
Query: 6 GQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXXX--PTIGVDFKIKLLTVAGKR-- 61
G N+Y ++++LIG+ GVGK +G D + L V G+
Sbjct: 1 GSGNTY---YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT 57
Query: 62 -LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ- 119
+ L +W+ G+ + L + ++VY +T R +F S++ + L Q
Sbjct: 58 IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQT 112
Query: 120 -DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
D +LVGNK D R VS EG A A F+E SA + NV++ FE + ++
Sbjct: 113 EDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+IL++G GK PTIG + + TV K + T+WD GQ++
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGQDK 73
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
R L YY+ Q II V D R+
Sbjct: 74 IRPLWRHYYQNTQAIIFVVDSNDRD 98
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
+IL +G GK PT+G + + TV K +K +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGQDKI 57
Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
R L YY G QG+I V D R+
Sbjct: 58 RPLWRHYYTGTQGLIFVVDCADRD 81
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 80/180 (44%), Gaps = 15/180 (8%)
Query: 4 SSGQSNSYDLSFKILLIGDSGVGKXXXXXXXXXXXXXXXX--PTIGVDFKIKLLTVAGKR 61
SS N+Y ++++LIG+ GVGK +G D + L V G+
Sbjct: 30 SSESGNTY---YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES 86
Query: 62 ---LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTN 118
+ L +W+ G+ + L + ++VY +T R +F S++ + L
Sbjct: 87 ATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRAR 141
Query: 119 Q--DCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
Q D +LVGNK D R VS EG A A F+E SA + NV++ FE + ++
Sbjct: 142 QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 13 LSFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ +IL++G GK PT+G + + TV K +K +WD G
Sbjct: 2 MEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGL 57
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRE 99
++ R L YY G QG+I V D R+
Sbjct: 58 DKIRPLWRHYYTGTQGLIFVVDCADRD 84
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
Length = 172
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 13 LSFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72
+ +IL++G GK PT+G + + TV K +K +WD G
Sbjct: 1 MEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGL 56
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRE 99
++ R L YY G QG+I V D R+
Sbjct: 57 DKIRPLWRHYYTGTQGLIFVVDCADRD 83
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In
Complex With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 14 SFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73
S +IL++G GK PTIG + + TV K + T+WD G +
Sbjct: 2 SMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE----TVEYKNISFTVWDVGGLD 57
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRE 99
+ R L Y++ QG+I V D RE
Sbjct: 58 KIRPLWRHYFQNTQGLIFVVDSNDRE 83
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 15 FKILLIGDSGVGKXXXXXXXX--XXXXXXXXPTIGVDFKIKLLTVAGKR---LKLTIWDT 69
++++LIG+ GVGK +G D + L V G+ + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ--DCVKMLVG 127
G+ + L + ++VY +T R +F S++ + L Q D +LVG
Sbjct: 67 KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 128 NKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
NK D R VS EG A A F+E SA + NV++ FE + ++
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 15 FKILLIGDSGVGKXXXXXXXX--XXXXXXXXPTIGVDFKIKLLTVAGKR---LKLTIWDT 69
++++LIG+ GVGK +G D + L V G+ + L +W+
Sbjct: 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 70 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ--DCVKMLVG 127
G+ + L + ++VY +T R +F S++ + L Q D +LVG
Sbjct: 67 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASEL---RIQLRRARQTEDIPIILVG 121
Query: 128 NKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
NK D R VS EG A A F+E SA + NV++ FE + ++
Sbjct: 122 NKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 76/180 (42%), Gaps = 8/180 (4%)
Query: 4 SSGQSNSY-----DLSFKILLIGDSGVGKXXXXXX-XXXXXXXXXXPTIGVDFKIKLLTV 57
SSG+ N Y D FK++L+G+SGVGK P D + + V
Sbjct: 8 SSGRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV 67
Query: 58 AGKRLKLTIWDTAGQ-ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYS 116
+ + L ++D Q + L + ++V+ VT R +F+ + + + +
Sbjct: 68 DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGR 126
Query: 117 TNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
+ D +LVGNK D R VS EEG LA +E SA N + FE +I
Sbjct: 127 PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+IL++G GK PT+G + + TV K +K +WD G ++
Sbjct: 14 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVTYKNVKFNVWDVGGLDK 69
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
R L YY G QG+I V D R+
Sbjct: 70 IRPLWRHYYTGTQGLIFVVDCADRD 94
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
+IL++G GK PTIG + + TV + + T+WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKVKLGEVVTTIPTIGFNVE----TVEFRNISFTVWDVGGQDKI 74
Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
R L YY G+I V D RE
Sbjct: 75 RPLWRHYYSNTDGLIFVVDSNDRE 98
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
+IL++G G GK PTIG + + V + T+WD GQ+R
Sbjct: 19 RILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVE----CVQYCNISFTVWDVGGQDRI 74
Query: 76 RTLTSSYYRGAQGIILVYDVTRR 98
R+L YY +G+I V D R
Sbjct: 75 RSLWRHYYCNTEGVIFVVDSNDR 97
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 72/178 (40%), Gaps = 16/178 (8%)
Query: 4 SSGQSNSY---DLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGK 60
SSG+ N Y L + ++G G GK D TV +
Sbjct: 8 SSGRENLYFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQ 67
Query: 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV------TRRETFTNLSDVWAKEVDL 114
+ L + DTA + R Y A ++VY V ++ L + AKE
Sbjct: 68 PVHLRVMDTADLDTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKE--- 123
Query: 115 YSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA-KTRENVEQCFEQ 171
T + +L+GNK+D R V++ EG+ALA G LF E SA E+V+ F +
Sbjct: 124 --TQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHE 179
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 69/171 (40%), Gaps = 22/171 (12%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
K++++G GK PTIG + + + K +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHTSPTIGSNVE----EIVVKNTHFLMWDIGGQESL 73
Query: 76 RTLTSSYYRGAQGIILVYD--------VTRRETFTNLS--DVWAKEVDLYSTNQDCVKML 125
R+ ++YY + IILV D +T+ E + L+ D+ V +++ QD +
Sbjct: 74 RSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQDMKGCM 133
Query: 126 VGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
+ +S+ ++ K+H C A T E + Q E + +I
Sbjct: 134 TAAE--------ISKYLTLSSIKDHPWHIQSCCALTGEGLCQGLEWMTSRI 176
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
++L++G GK PT+G + K T+ + KL IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 72
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
R+ +Y+ G+I V D R+
Sbjct: 73 LRSYWRNYFESTDGLIWVVDSADRQ 97
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 12 DLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
D +ILL+G GK PT G + K +V + KL +WD G
Sbjct: 15 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGG 70
Query: 72 QERFRTLTSSYYRGAQGIILVYDVTRRETF 101
Q + R SY+ +I V D R+ F
Sbjct: 71 QRKIRPYWRSYFENTDILIYVIDSADRKRF 100
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
++L++G GK PT+G + K T+ + KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 74
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
R+ +Y+ G+I V D R+
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQ 99
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 12 DLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71
D +ILL+G GK PT G + K +V + KL +WD G
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGG 69
Query: 72 QERFRTLTSSYYRGAQGIILVYDVTRRETF 101
Q + R SY+ +I V D R+ F
Sbjct: 70 QRKIRPYWRSYFENTDILIYVIDSADRKRF 99
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
++L++G GK PT+G + K T+ + KL IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKS 74
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
R+ +Y+ G+I V D R+
Sbjct: 75 LRSYWRNYFESTDGLIWVVDSADRQ 99
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+IL++G G GK PTIG + + TV K LK +WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE----TVTYKNLKFQVWDLGGQTS 58
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
R YY +I V D R+
Sbjct: 59 IRPYWRCYYSNTDAVIYVVDSCDRD 83
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 3/158 (1%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGV-DFKIKLLTVAGKRLKLTIWDTAGQ- 72
FK++L+G+SGVGK D + + V + + L ++D Q
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
+ L + ++V+ VT R +F+ + + + + + D +LVGNK D
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILVGNKSDL 121
Query: 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170
R VS EEG LA +E SA N + FE
Sbjct: 122 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE 159
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE 99
PT+G + + V + + IWD GQ RFR++ Y RG I+ + D RE
Sbjct: 53 PTVGFNMR----KVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADRE 104
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 3/167 (1%)
Query: 12 DLSFKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGV-DFKIKLLTVAGKRLKLTIWDTA 70
D FK++L+G+SGVGK D + + V + + L ++D
Sbjct: 10 DGVFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIW 69
Query: 71 GQ-ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129
Q + L + ++V+ VT R +F+ + + + + + D +LVGNK
Sbjct: 70 EQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLR-LRAGRPHHDLPVILVGNK 128
Query: 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176
D R VS EEG LA +E SA N + FE +I
Sbjct: 129 SDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
+ILL+G GK PT G + K +V + KL +WD GQ +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGGQRKI 61
Query: 76 RTLTSSYYRGAQGIILVYDVTRRETF 101
R SY+ +I V D R+ F
Sbjct: 62 RPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
K++++G GK PTIG + + + + +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESL 79
Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
R+ ++YY + +I+V D T RE
Sbjct: 80 RSSWNTYYTNTEFVIVVVDSTDRE 103
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
K++++G GK PTIG + + + + +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESL 78
Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
R+ ++YY + +I+V D T RE
Sbjct: 79 RSSWNTYYTNTEFVIVVVDSTDRE 102
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
K++++G GK PTIG + + + + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESL 73
Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
R+ ++YY + +I+V D T RE
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
K++++G GK PTIG + + + + +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIVINNTRFLMWDIGGQESL 73
Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
R+ ++YY + +I+V D T RE
Sbjct: 74 RSSWNTYYTNTEFVIVVVDSTDRE 97
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE 99
PT+G F IK L G KL IWD GQ+ R+ +Y+ G+I V D R+
Sbjct: 48 PTLG--FNIKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ 99
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
++L++G GK PT+G + K T+ + KL IWD G +
Sbjct: 2 LRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLEHRGFKLNIWDVGGLKS 57
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
R+ +Y+ G+I V D R+
Sbjct: 58 LRSYWRNYFESTDGLIWVVDSADRQ 82
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 15 FKILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74
+IL++G G GK PTIG + + TV K LK +WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE----TVTYKNLKFQVWDLGGLTS 60
Query: 75 FRTLTSSYYRGAQGIILVYDVTRRE 99
R YY +I V D R+
Sbjct: 61 IRPYWRCYYSNTDAVIYVVDSCDRD 85
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE 99
PT+G F ++ +T +KL WD GQ RFR++ Y RG I+ + D +E
Sbjct: 53 PTVG--FNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE 104
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR 98
PTIG F I+ L T++D +GQ R+R L YY+ Q II V D + R
Sbjct: 53 PTIG--FSIE--KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDR 103
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 44 PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE 99
PT+G F ++ +T +KL WD GQ RFR++ Y RG I+ + D +E
Sbjct: 62 PTVG--FNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE 113
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
+IL++G G GK PTIG + + TV K LK +WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE----TVTYKNLKFQVWDLGGLTSI 64
Query: 76 RTLTSSYYRGAQGIILVYDVTRRE 99
R YY +I V D R+
Sbjct: 65 RPYWRCYYSNTDAVIYVVDSCDRD 88
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXXXXXPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75
+ILL+G GK PT G + K +V + KL +WD G +
Sbjct: 6 RILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK----SVQSQGFKLNVWDIGGLRKI 61
Query: 76 RTLTSSYYRGAQGIILVYDVTRRETF 101
R SY+ +I V D R+ F
Sbjct: 62 RPYWRSYFENTDILIYVIDSADRKRF 87
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXX---XXXPTIGVDFKIKLLTVAGKR---LKLTIWDT 69
K+ ++G++G GK T+G+D K + + KR L L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 70 AGQERFRTLTSSYYRGAQGIIL-VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
AG+E F + T ++ + + L VYD+++ + + W + +++ + LVG
Sbjct: 62 AGREEFYS-THPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI--LVGT 118
Query: 129 KVDRDSER 136
+D E+
Sbjct: 119 HLDVSDEK 126
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 16 KILLIGDSGVGKXXXXXXXXXXXXX---XXXPTIGVDFKIKLLTVAGKR---LKLTIWDT 69
K+ ++G++G GK T+G+D K + + KR L L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 70 AGQERFRTLTSSYYRGAQGIIL-VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128
AG+E F + T ++ + + L VYD+++ + + W + +++ + LVG
Sbjct: 64 AGREEFYS-THPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI--LVGT 120
Query: 129 KVDRDSER 136
+D E+
Sbjct: 121 HLDVSDEK 128
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 16 KILLIGDSGVGKXXXXXXXXXX---XXXXXXPTIGVDFKIKLLTVAGK--RLKLTIWDTA 70
K+ ++G++ VGK T GV+ + +T+ ++L + DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETF 101
G + ++ S Y+ G ILV+DV+ E+F
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESF 112
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 63 KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTR------RETFTNLSDVW-AKEVDLY 115
K+ I+ GQ TL + G + +LV D +R R + DV A +VD
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT 64
Query: 116 STNQDCVKMLVGNKVDRDSERVVSREEG----IALAKEHG 151
QD V +L+G + D V+S EG +A K HG
Sbjct: 65 VAGQDAVIVLLGTRNDLSPTTVMS--EGARNIVAAMKAHG 102
>pdb|3LY1|A Chain A, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Yp_050345.1) From Erwinia Carotovora
Atroseptica Scri1043 At 1.80 A Resolution
pdb|3LY1|B Chain B, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Yp_050345.1) From Erwinia Carotovora
Atroseptica Scri1043 At 1.80 A Resolution
pdb|3LY1|C Chain C, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Yp_050345.1) From Erwinia Carotovora
Atroseptica Scri1043 At 1.80 A Resolution
pdb|3LY1|D Chain D, Crystal Structure Of Putative Histidinol-Phosphate
Aminotransferase (Yp_050345.1) From Erwinia Carotovora
Atroseptica Scri1043 At 1.80 A Resolution
Length = 354
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133
RFR+++ +GA+ IIL+ +TF+ + V Y+ V L G V
Sbjct: 190 RFRSISPXITQGAENIILL------KTFSKIHAXAGXRVG-YAVAHPTVIALXGRYV--A 240
Query: 134 SERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKRN 193
E++ ALA + S F+ S K+ + Q + AL+ +++P L EG+ V +
Sbjct: 241 GEKINFSGVDAALASXNDSAFITYSKKSNDVSRQILLK-ALEDLKLPYLPSEGNFVFHQL 299
Query: 194 ILKQK 198
++ K
Sbjct: 300 VVPLK 304
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD 94
R+ T++D G ++FR L +YY +I V D
Sbjct: 62 RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVD 95
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 24/124 (19%)
Query: 63 KLTIWDTAGQERFRTLTSSYYRGAQG---IILVY---DVTRRETFTNLSDVWAKEVDLYS 116
K+T DT G E F T+ + RGAQ +ILV D +T ++ A V +
Sbjct: 56 KITFLDTPGHEAFTTMRA---RGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPI-- 110
Query: 117 TNQDCVKMLVGNKVDR---DSERVVSREEGIALAKEH---GSLFLECSAKTRENVEQCFE 170
++ NK+D+ + +RV+ L E ++F + SAKT+E ++ E
Sbjct: 111 -------IVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLE 163
Query: 171 QLAL 174
+ L
Sbjct: 164 MILL 167
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 55 LTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDL 114
LT+AG + T +D G E+ R + +Y GI+ + D S V +
Sbjct: 74 LTIAG--MTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVE-SKVELNALMT 130
Query: 115 YSTNQDCVKMLVGNKVDR 132
T + +++GNK+DR
Sbjct: 131 DETISNVPILILGNKIDR 148
>pdb|1KVP|A Chain A, Structural Analysis Of The Spiroplasma Virus, Spv4,
Implications For Evolutionary Variation To Obtain Host
Diversity Among The Microviridae, Electron Microscopy,
Alpha Carbons Only
Length = 497
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
+R+R + SS+ G YD R S++WA D+ T+Q + G +V +
Sbjct: 284 QRYRDVISSF-----GGKTSYDADNRPLLVMRSNLWASGYDVDGTDQTSLGQFSG-RVQQ 337
Query: 133 DSERVVSREEGIALAKEHGSLF 154
+ V R EHG++F
Sbjct: 338 TYKHSVPR----FFVPEHGTMF 355
>pdb|1CD3|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
+R+R + SS+ G YD R S++WA D+ T+Q + G +V +
Sbjct: 213 QRYRDVISSF-----GGKTSYDADNRPLLVMRSNLWASGYDVDGTDQTSLGQFSG-RVQQ 266
Query: 133 DSERVVSREEGIALAKEHGSLF 154
+ V R EHG++F
Sbjct: 267 TYKHSVPR----FFVPEHGTMF 284
>pdb|2BPA|1 Chain 1, Atomic Structure Of Single-Stranded Dna Bacteriophage
Phix174 And Its Functional Implications
pdb|1AL0|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132
+R+R + SS+ G YD R S++WA D+ T+Q + G +V +
Sbjct: 213 QRYRDVISSF-----GGKTSYDADNRPLLVMRSNLWASGYDVDGTDQTSLGQFSG-RVQQ 266
Query: 133 DSERVVSREEGIALAKEHGSLF 154
+ V R EHG++F
Sbjct: 267 TYKHSVPR----FFVPEHGTMF 284
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 54 LLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE 99
L T+ K + +WD GQ R Y+ +I V D T R+
Sbjct: 58 LETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD 103
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGI 144
GA+ +++ + R +TF+ + DV + Y GN + D + EE +
Sbjct: 158 GARPVVMQLPIGREDTFSGIIDVLRMKAYTY-----------GNDLGTDIREIPIPEEYL 206
Query: 145 ALAKEHGSLFLECSAKTRENV 165
A+E+ +E +A EN+
Sbjct: 207 DQAREYHEKLVEVAADFDENI 227
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGI 144
GA+ +++ + R +TF+ + DV + Y GN + D + EE +
Sbjct: 158 GARPVVMQLPIGREDTFSGIIDVLRMKAYTY-----------GNDLGTDIREIPIPEEYL 206
Query: 145 ALAKEHGSLFLECSAKTRENV 165
A+E+ +E +A EN+
Sbjct: 207 DQAREYHEKLVEVAADFDENI 227
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGI 144
GA+ +++ + R +TF+ + DV + Y GN + D + EE +
Sbjct: 158 GARPVVMQLPIGREDTFSGIIDVLRMKAYTY-----------GNDLGTDIREIPIPEEYL 206
Query: 145 ALAKEHGSLFLECSAKTRENV 165
A+E+ +E +A EN+
Sbjct: 207 DQAREYHEKLVEVAADFDENI 227
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 27.7 bits (60), Expect = 4.3, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGI 144
GA+ +++ + R +TF+ + DV + Y GN + D + EE +
Sbjct: 125 GARPVVMQLPIGREDTFSGIIDVLRMKAYTY-----------GNDLGTDIREIPIPEEYL 173
Query: 145 ALAKEHGSLFLECSAKTRENV 165
A+E+ +E +A EN+
Sbjct: 174 DQAREYHEKLVEVAADFDENI 194
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 27.7 bits (60), Expect = 4.3, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGI 144
GA+ +++ + R +TF+ + DV + Y GN + D + EE +
Sbjct: 158 GARPVVMQLPIGREDTFSGIIDVLRMKAYTY-----------GNDLGTDIREIPIPEEYL 206
Query: 145 ALAKEHGSLFLECSAKTRENV 165
A+E+ +E +A EN+
Sbjct: 207 DQAREYHEKLVEVAADFDENI 227
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 27.7 bits (60), Expect = 4.3, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGI 144
GA+ +++ + R +TF+ + DV + Y GN + D + EE +
Sbjct: 158 GARPVVMQLPIGREDTFSGIIDVLRMKAYTY-----------GNDLGTDIREIPIPEEYL 206
Query: 145 ALAKEHGSLFLECSAKTRENV 165
A+E+ +E +A EN+
Sbjct: 207 DQAREYHEKLVEVAADFDENI 227
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 27.7 bits (60), Expect = 4.3, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGI 144
GA+ +++ + R +TF+ + DV + Y GN + D + EE +
Sbjct: 158 GARPVVMQLPIGREDTFSGIIDVLRMKAYTY-----------GNDLGTDIREIPIPEEYL 206
Query: 145 ALAKEHGSLFLECSAKTRENV 165
A+E+ +E +A EN+
Sbjct: 207 DQAREYHEKLVEVAADFDENI 227
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 27.7 bits (60), Expect = 4.4, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGI 144
GA+ +++ + R +TF+ + DV + Y GN + D + EE +
Sbjct: 158 GARPVVMQLPIGREDTFSGIIDVLRMKAYTY-----------GNDLGTDIREIPIPEEYL 206
Query: 145 ALAKEHGSLFLECSAKTRENV 165
A+E+ +E +A EN+
Sbjct: 207 DQAREYHEKLVEVAADFDENI 227
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 27.3 bits (59), Expect = 6.0, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGI 144
GA+ +++ + R +TF+ + DV + Y GN + D + EE +
Sbjct: 158 GARPVVMQLPIGREDTFSGIIDVLRMKAYTY-----------GNDLGTDIREIPIPEEYL 206
Query: 145 ALAKEHGSLFLECSAKTRENV 165
A+E+ +E +A EN+
Sbjct: 207 DNAREYHEKLVEVAADFDENI 227
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,387,670
Number of Sequences: 62578
Number of extensions: 190884
Number of successful extensions: 1384
Number of sequences better than 100.0: 356
Number of HSP's better than 100.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 607
Number of HSP's gapped (non-prelim): 359
length of query: 211
length of database: 14,973,337
effective HSP length: 95
effective length of query: 116
effective length of database: 9,028,427
effective search space: 1047297532
effective search space used: 1047297532
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)