Query 028300
Match_columns 211
No_of_seqs 149 out of 1699
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 09:22:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0080 GTPase Rab18, small G 100.0 8.5E-43 1.8E-47 232.0 19.6 202 9-211 6-208 (209)
2 KOG0084 GTPase Rab1/YPT1, smal 100.0 5.2E-42 1.1E-46 236.4 20.6 200 9-211 4-205 (205)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 8.1E-42 1.8E-46 234.5 20.0 197 12-211 3-200 (200)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 6.7E-41 1.5E-45 230.1 20.0 199 12-211 20-221 (221)
5 PLN03118 Rab family protein; P 100.0 1.4E-39 3.1E-44 238.7 25.1 211 1-211 1-211 (211)
6 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.1E-38 6.6E-43 230.0 22.6 195 15-210 1-201 (201)
7 KOG0078 GTP-binding protein SE 100.0 4.2E-38 9.1E-43 220.1 21.1 170 10-181 8-178 (207)
8 KOG0087 GTPase Rab11/YPT3, sma 100.0 1.4E-37 3E-42 216.6 19.7 180 1-182 1-181 (222)
9 cd04120 Rab12 Rab12 subfamily. 100.0 2.5E-36 5.4E-41 218.8 23.3 166 15-182 1-168 (202)
10 cd04121 Rab40 Rab40 subfamily. 100.0 3.1E-36 6.7E-41 216.4 23.2 166 11-179 3-169 (189)
11 KOG0394 Ras-related GTPase [Ge 100.0 2.2E-36 4.7E-41 205.9 18.4 172 10-182 5-183 (210)
12 cd04110 Rab35 Rab35 subfamily. 100.0 1.3E-35 2.9E-40 215.7 23.6 195 12-210 4-199 (199)
13 PLN03110 Rab GTPase; Provision 100.0 3.9E-35 8.5E-40 215.6 24.3 167 11-179 9-176 (216)
14 KOG0098 GTPase Rab2, small G p 100.0 7.3E-36 1.6E-40 203.8 18.5 167 11-179 3-170 (216)
15 cd04112 Rab26 Rab26 subfamily. 100.0 3.1E-35 6.7E-40 212.6 22.6 189 15-210 1-191 (191)
16 cd04126 Rab20 Rab20 subfamily. 100.0 2E-35 4.3E-40 216.3 21.6 187 15-210 1-220 (220)
17 cd04144 Ras2 Ras2 subfamily. 100.0 2E-35 4.3E-40 213.4 20.7 185 16-211 1-188 (190)
18 KOG0093 GTPase Rab3, small G p 100.0 6.4E-36 1.4E-40 196.4 15.8 176 4-181 11-187 (193)
19 cd04125 RabA_like RabA-like su 100.0 7E-35 1.5E-39 210.3 22.8 185 15-211 1-186 (188)
20 PTZ00369 Ras-like protein; Pro 100.0 6.1E-35 1.3E-39 210.7 20.6 166 12-179 3-169 (189)
21 cd04109 Rab28 Rab28 subfamily. 100.0 1.5E-34 3.3E-39 212.5 22.7 165 15-180 1-169 (215)
22 cd04122 Rab14 Rab14 subfamily. 100.0 1.7E-34 3.7E-39 204.3 21.8 163 14-178 2-165 (166)
23 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 2E-34 4.3E-39 212.2 22.8 171 6-179 5-190 (232)
24 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.3E-34 2.9E-39 207.0 21.2 163 12-177 3-180 (182)
25 KOG0079 GTP-binding protein H- 100.0 9E-36 2E-40 195.9 13.3 167 11-180 5-172 (198)
26 cd04133 Rop_like Rop subfamily 100.0 2E-34 4.3E-39 204.8 20.8 160 15-177 2-173 (176)
27 cd01867 Rab8_Rab10_Rab13_like 100.0 4E-34 8.6E-39 202.7 21.8 164 13-178 2-166 (167)
28 cd04127 Rab27A Rab27a subfamil 100.0 2.8E-34 6.1E-39 205.8 21.3 166 12-178 2-178 (180)
29 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 2.7E-34 5.9E-39 204.2 20.9 163 14-178 2-165 (172)
30 cd04111 Rab39 Rab39 subfamily. 100.0 6.1E-34 1.3E-38 208.4 23.0 167 14-181 2-170 (211)
31 KOG0088 GTPase Rab21, small G 100.0 2.3E-35 5.1E-40 196.1 13.5 169 10-180 9-178 (218)
32 cd01875 RhoG RhoG subfamily. 100.0 5.6E-34 1.2E-38 205.9 21.5 163 13-178 2-178 (191)
33 cd04131 Rnd Rnd subfamily. Th 100.0 4.9E-34 1.1E-38 203.6 20.8 161 14-177 1-176 (178)
34 cd04118 Rab24 Rab24 subfamily. 100.0 1.5E-33 3.3E-38 204.2 23.4 187 15-210 1-193 (193)
35 cd01865 Rab3 Rab3 subfamily. 100.0 1.3E-33 2.8E-38 199.6 22.0 161 15-177 2-163 (165)
36 cd04132 Rho4_like Rho4-like su 100.0 7.2E-34 1.6E-38 204.9 21.0 179 15-211 1-186 (187)
37 cd04119 RJL RJL (RabJ-Like) su 100.0 1.1E-33 2.4E-38 200.3 21.2 163 15-178 1-168 (168)
38 cd04117 Rab15 Rab15 subfamily. 100.0 1.1E-33 2.4E-38 199.2 20.7 159 15-175 1-160 (161)
39 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.7E-33 3.7E-38 199.2 21.6 163 14-178 2-165 (166)
40 cd04136 Rap_like Rap-like subf 100.0 1E-33 2.2E-38 199.7 19.9 161 14-176 1-162 (163)
41 PF00071 Ras: Ras family; Int 100.0 1.7E-33 3.7E-38 198.4 19.8 160 16-177 1-161 (162)
42 PLN03108 Rab family protein; P 100.0 9.8E-33 2.1E-37 202.1 24.2 166 12-179 4-170 (210)
43 cd04175 Rap1 Rap1 subgroup. T 100.0 2.5E-33 5.5E-38 198.0 20.3 162 14-177 1-163 (164)
44 cd01874 Cdc42 Cdc42 subfamily. 100.0 2.6E-33 5.5E-38 199.7 20.3 159 15-176 2-174 (175)
45 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 6.3E-33 1.4E-37 203.3 22.8 163 15-180 2-179 (222)
46 PLN03071 GTP-binding nuclear p 100.0 5.1E-33 1.1E-37 204.6 21.8 164 12-180 11-175 (219)
47 cd01868 Rab11_like Rab11-like. 100.0 6.9E-33 1.5E-37 195.9 21.5 162 13-176 2-164 (165)
48 KOG0091 GTPase Rab39, small G 100.0 7.3E-34 1.6E-38 189.9 15.1 170 10-180 4-176 (213)
49 cd04128 Spg1 Spg1p. Spg1p (se 100.0 5.1E-33 1.1E-37 199.1 20.7 165 15-182 1-171 (182)
50 cd01866 Rab2 Rab2 subfamily. 100.0 1.4E-32 3.1E-37 194.8 22.2 165 12-178 2-167 (168)
51 cd04134 Rho3 Rho3 subfamily. 100.0 9.8E-33 2.1E-37 199.1 21.6 160 16-178 2-175 (189)
52 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.1E-32 2.5E-37 195.5 21.4 163 16-179 2-167 (170)
53 cd04113 Rab4 Rab4 subfamily. 100.0 9E-33 2E-37 194.5 20.5 159 15-175 1-160 (161)
54 cd01864 Rab19 Rab19 subfamily. 100.0 1.3E-32 2.9E-37 194.5 21.3 161 13-175 2-164 (165)
55 smart00173 RAS Ras subfamily o 100.0 9E-33 1.9E-37 195.1 20.3 162 15-178 1-163 (164)
56 cd04106 Rab23_lke Rab23-like s 100.0 8.3E-33 1.8E-37 194.9 20.0 158 15-175 1-161 (162)
57 cd04176 Rap2 Rap2 subgroup. T 100.0 9.5E-33 2.1E-37 194.8 19.9 161 14-176 1-162 (163)
58 smart00175 RAB Rab subfamily o 100.0 3.6E-32 7.9E-37 191.9 21.3 162 15-178 1-163 (164)
59 cd04115 Rab33B_Rab33A Rab33B/R 100.0 3E-32 6.5E-37 193.6 20.8 162 14-176 2-168 (170)
60 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.8E-32 6E-37 192.0 20.5 160 14-176 1-161 (162)
61 KOG0086 GTPase Rab4, small G p 100.0 7.7E-33 1.7E-37 183.2 16.3 170 8-179 3-173 (214)
62 cd00877 Ran Ran (Ras-related n 100.0 3.7E-32 7.9E-37 192.3 20.7 161 15-180 1-162 (166)
63 cd01871 Rac1_like Rac1-like su 100.0 3.6E-32 7.7E-37 193.6 20.5 158 15-175 2-173 (174)
64 cd04116 Rab9 Rab9 subfamily. 100.0 6E-32 1.3E-36 192.0 21.5 162 12-175 3-169 (170)
65 cd04145 M_R_Ras_like M-Ras/R-R 100.0 4.6E-32 9.9E-37 191.4 20.6 161 14-176 2-163 (164)
66 cd04124 RabL2 RabL2 subfamily. 100.0 8.3E-32 1.8E-36 189.6 20.9 159 15-179 1-160 (161)
67 cd01860 Rab5_related Rab5-rela 100.0 1.1E-31 2.4E-36 189.3 21.4 161 14-176 1-162 (163)
68 KOG0081 GTPase Rab27, small G 100.0 2.3E-34 5E-39 191.6 6.8 172 9-181 4-185 (219)
69 cd04140 ARHI_like ARHI subfami 100.0 8E-32 1.7E-36 190.5 20.3 158 15-174 2-162 (165)
70 smart00174 RHO Rho (Ras homolo 100.0 9.7E-32 2.1E-36 191.6 19.9 159 17-178 1-173 (174)
71 cd01863 Rab18 Rab18 subfamily. 100.0 2.2E-31 4.8E-36 187.4 20.8 159 15-175 1-160 (161)
72 cd01861 Rab6 Rab6 subfamily. 100.0 2.6E-31 5.6E-36 187.1 20.6 159 15-175 1-160 (161)
73 cd04142 RRP22 RRP22 subfamily. 100.0 2E-31 4.4E-36 193.1 20.2 167 15-182 1-179 (198)
74 cd04177 RSR1 RSR1 subgroup. R 100.0 3.2E-31 6.9E-36 187.9 20.6 162 14-177 1-164 (168)
75 cd01873 RhoBTB RhoBTB subfamil 100.0 2.8E-31 6E-36 191.7 19.8 158 14-175 2-194 (195)
76 smart00176 RAN Ran (Ras-relate 100.0 3E-31 6.5E-36 191.9 20.0 155 20-179 1-156 (200)
77 KOG0095 GTPase Rab30, small G 100.0 7.5E-32 1.6E-36 177.8 15.1 173 11-185 4-177 (213)
78 cd04123 Rab21 Rab21 subfamily. 100.0 6.3E-31 1.4E-35 185.1 21.0 160 15-176 1-161 (162)
79 cd01862 Rab7 Rab7 subfamily. 100.0 8.1E-31 1.8E-35 186.4 21.5 165 15-180 1-170 (172)
80 cd04148 RGK RGK subfamily. Th 100.0 4.2E-31 9.2E-36 194.6 20.6 165 15-182 1-168 (221)
81 cd04101 RabL4 RabL4 (Rab-like4 100.0 5.4E-31 1.2E-35 186.0 20.3 159 15-176 1-163 (164)
82 cd04130 Wrch_1 Wrch-1 subfamil 100.0 7E-31 1.5E-35 187.0 20.3 157 15-174 1-171 (173)
83 cd04103 Centaurin_gamma Centau 100.0 5.7E-31 1.2E-35 184.5 19.2 154 15-175 1-157 (158)
84 cd04135 Tc10 TC10 subfamily. 100.0 8.6E-31 1.9E-35 186.7 20.2 159 15-176 1-173 (174)
85 cd04139 RalA_RalB RalA/RalB su 100.0 1.8E-30 3.8E-35 183.2 20.7 161 15-177 1-162 (164)
86 cd04143 Rhes_like Rhes_like su 100.0 9.6E-31 2.1E-35 195.1 20.3 161 15-177 1-171 (247)
87 cd04146 RERG_RasL11_like RERG/ 100.0 7.2E-31 1.6E-35 185.6 18.2 160 16-177 1-164 (165)
88 cd01892 Miro2 Miro2 subfamily. 100.0 1.3E-30 2.8E-35 184.8 19.4 162 12-177 2-166 (169)
89 cd00154 Rab Rab family. Rab G 100.0 3E-30 6.4E-35 180.8 19.9 157 15-173 1-158 (159)
90 cd04114 Rab30 Rab30 subfamily. 100.0 7.1E-30 1.5E-34 181.1 21.9 163 12-176 5-168 (169)
91 KOG0083 GTPase Rab26/Rab37, sm 100.0 1.1E-32 2.4E-37 178.5 6.3 187 19-210 2-190 (192)
92 cd04149 Arf6 Arf6 subfamily. 100.0 9.6E-31 2.1E-35 185.3 16.6 156 12-174 7-167 (168)
93 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.1E-30 2.4E-35 187.5 17.0 168 13-183 2-176 (183)
94 cd04147 Ras_dva Ras-dva subfam 100.0 6.1E-30 1.3E-34 185.9 20.2 167 16-184 1-170 (198)
95 smart00177 ARF ARF-like small 100.0 3.8E-31 8.2E-36 188.6 13.6 159 12-177 11-174 (175)
96 PLN00223 ADP-ribosylation fact 100.0 1.8E-30 3.9E-35 185.9 17.0 160 12-178 15-179 (181)
97 cd04158 ARD1 ARD1 subfamily. 100.0 2E-30 4.4E-35 183.9 16.5 159 16-181 1-165 (169)
98 cd01870 RhoA_like RhoA-like su 100.0 1.5E-29 3.3E-34 180.4 20.5 159 15-176 2-174 (175)
99 cd00876 Ras Ras family. The R 100.0 1.3E-29 2.8E-34 178.0 19.2 158 16-175 1-159 (160)
100 cd04150 Arf1_5_like Arf1-Arf5- 100.0 8.9E-31 1.9E-35 183.9 12.9 153 15-174 1-158 (159)
101 KOG0097 GTPase Rab14, small G 100.0 1.5E-29 3.4E-34 165.6 17.7 168 10-179 7-175 (215)
102 PTZ00133 ADP-ribosylation fact 100.0 1.7E-30 3.6E-35 186.3 13.9 161 12-179 15-180 (182)
103 cd04137 RheB Rheb (Ras Homolog 100.0 3.3E-29 7.1E-34 179.5 20.3 164 15-180 2-166 (180)
104 cd04129 Rho2 Rho2 subfamily. 100.0 4.2E-29 9.2E-34 179.9 20.9 164 15-181 2-177 (187)
105 cd00157 Rho Rho (Ras homology) 100.0 3E-29 6.4E-34 178.2 19.9 157 15-174 1-170 (171)
106 cd04154 Arl2 Arl2 subfamily. 100.0 1.3E-29 2.8E-34 180.5 16.8 158 10-174 10-172 (173)
107 KOG0395 Ras-related GTPase [Ge 100.0 4.7E-29 1E-33 179.2 17.1 166 13-180 2-168 (196)
108 cd01893 Miro1 Miro1 subfamily. 100.0 1.2E-28 2.5E-33 174.4 18.9 161 15-178 1-165 (166)
109 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.2E-29 2.5E-34 179.1 12.8 151 17-174 2-163 (164)
110 PTZ00132 GTP-binding nuclear p 100.0 9.8E-28 2.1E-32 176.5 21.9 169 9-182 4-173 (215)
111 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 9.4E-29 2E-33 176.2 15.6 155 13-174 14-173 (174)
112 KOG0393 Ras-related small GTPa 100.0 5.7E-29 1.2E-33 175.1 13.1 167 12-181 2-183 (198)
113 cd04151 Arl1 Arl1 subfamily. 100.0 5.3E-29 1.1E-33 174.8 12.8 152 16-174 1-157 (158)
114 PF00025 Arf: ADP-ribosylation 100.0 2.9E-28 6.3E-33 173.5 16.3 159 11-176 11-175 (175)
115 cd00879 Sar1 Sar1 subfamily. 100.0 3.4E-28 7.3E-33 175.7 16.1 157 12-175 17-189 (190)
116 KOG0073 GTP-binding ADP-ribosy 100.0 8.3E-28 1.8E-32 161.0 16.1 164 10-178 12-179 (185)
117 cd04102 RabL3 RabL3 (Rab-like3 100.0 9.8E-28 2.1E-32 173.5 17.5 147 15-162 1-175 (202)
118 cd04157 Arl6 Arl6 subfamily. 100.0 1.4E-28 3E-33 173.3 12.7 152 16-174 1-161 (162)
119 cd04156 ARLTS1 ARLTS1 subfamil 100.0 3.3E-28 7.2E-33 171.1 14.6 153 16-174 1-159 (160)
120 cd04161 Arl2l1_Arl13_like Arl2 100.0 2.2E-28 4.7E-33 173.1 13.6 154 16-174 1-166 (167)
121 cd00878 Arf_Arl Arf (ADP-ribos 100.0 4.7E-28 1E-32 170.0 14.8 152 16-174 1-157 (158)
122 smart00178 SAR Sar1p-like memb 100.0 1.2E-27 2.5E-32 171.9 15.7 158 11-175 14-183 (184)
123 PTZ00099 rab6; Provisional 100.0 1.3E-26 2.8E-31 164.8 19.2 143 38-182 4-147 (176)
124 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.9E-27 6.4E-32 167.4 15.3 152 16-174 1-166 (167)
125 cd04159 Arl10_like Arl10-like 99.9 3.1E-26 6.8E-31 160.4 14.8 151 17-174 2-158 (159)
126 cd04155 Arl3 Arl3 subfamily. 99.9 5.1E-26 1.1E-30 161.9 15.9 156 12-174 12-172 (173)
127 KOG0070 GTP-binding ADP-ribosy 99.9 1.4E-26 2.9E-31 159.1 12.1 167 8-179 11-180 (181)
128 PLN00023 GTP-binding protein; 99.9 2.5E-25 5.4E-30 168.6 18.3 143 9-152 16-189 (334)
129 KOG4252 GTP-binding protein [S 99.9 1.3E-27 2.8E-32 162.5 4.5 173 7-182 13-186 (246)
130 cd01897 NOG NOG1 is a nucleola 99.9 2.2E-25 4.8E-30 157.9 15.9 156 15-176 1-167 (168)
131 cd01890 LepA LepA subfamily. 99.9 1.9E-25 4.1E-30 159.9 15.1 153 16-176 2-176 (179)
132 cd01898 Obg Obg subfamily. Th 99.9 1.3E-25 2.9E-30 159.3 13.8 157 16-175 2-169 (170)
133 PRK12299 obgE GTPase CgtA; Rev 99.9 2.6E-25 5.6E-30 172.0 16.4 163 16-180 160-331 (335)
134 TIGR00231 small_GTP small GTP- 99.9 2.9E-24 6.4E-29 150.1 17.7 158 14-173 1-160 (161)
135 PRK15494 era GTPase Era; Provi 99.9 8.6E-25 1.9E-29 170.2 16.2 167 12-187 50-226 (339)
136 TIGR00436 era GTP-binding prot 99.9 1.1E-24 2.4E-29 165.3 15.1 163 16-186 2-173 (270)
137 cd01878 HflX HflX subfamily. 99.9 1.3E-24 2.9E-29 158.6 15.0 156 12-176 39-204 (204)
138 TIGR02528 EutP ethanolamine ut 99.9 7.3E-25 1.6E-29 151.1 12.3 134 16-173 2-141 (142)
139 COG1100 GTPase SAR1 and relate 99.9 1.8E-23 3.9E-28 154.3 19.3 169 13-182 4-190 (219)
140 cd00882 Ras_like_GTPase Ras-li 99.9 1.1E-23 2.4E-28 146.0 17.1 153 19-173 1-156 (157)
141 KOG0071 GTP-binding ADP-ribosy 99.9 5.1E-24 1.1E-28 139.3 14.0 159 12-177 15-178 (180)
142 cd04171 SelB SelB subfamily. 99.9 9.6E-24 2.1E-28 148.8 16.1 150 16-174 2-163 (164)
143 PF02421 FeoB_N: Ferrous iron 99.9 4.5E-25 9.7E-30 151.7 8.4 148 15-172 1-156 (156)
144 PRK04213 GTP-binding protein; 99.9 3.2E-24 7E-29 156.3 12.7 155 12-179 7-194 (201)
145 cd04164 trmE TrmE (MnmE, ThdF, 99.9 9.5E-24 2.1E-28 147.6 14.5 147 15-176 2-156 (157)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.5E-23 5.4E-28 147.3 15.8 155 16-177 2-166 (168)
147 cd01879 FeoB Ferrous iron tran 99.9 4E-23 8.7E-28 144.8 15.7 147 19-176 1-156 (158)
148 KOG0075 GTP-binding ADP-ribosy 99.9 1.5E-24 3.3E-29 142.8 7.6 160 12-178 18-183 (186)
149 PRK03003 GTP-binding protein D 99.9 8.3E-24 1.8E-28 171.7 13.4 162 12-181 209-386 (472)
150 TIGR00450 mnmE_trmE_thdF tRNA 99.9 3.4E-23 7.4E-28 165.8 16.2 155 11-179 200-362 (442)
151 cd01894 EngA1 EngA1 subfamily. 99.9 1.3E-23 2.9E-28 146.9 12.1 147 18-175 1-156 (157)
152 TIGR02729 Obg_CgtA Obg family 99.9 3.3E-23 7.1E-28 160.2 15.2 158 15-176 158-328 (329)
153 cd01891 TypA_BipA TypA (tyrosi 99.9 2.5E-23 5.4E-28 150.7 13.5 148 15-168 3-173 (194)
154 PF08477 Miro: Miro-like prote 99.9 5.1E-23 1.1E-27 137.6 13.5 114 16-131 1-119 (119)
155 PRK05291 trmE tRNA modificatio 99.9 2.8E-23 6E-28 167.2 14.0 151 12-178 213-371 (449)
156 PRK03003 GTP-binding protein D 99.9 4.1E-23 8.9E-28 167.7 14.8 155 13-178 37-200 (472)
157 cd01881 Obg_like The Obg-like 99.9 2.1E-23 4.6E-28 148.7 11.6 155 19-175 1-175 (176)
158 TIGR03156 GTP_HflX GTP-binding 99.9 7.9E-23 1.7E-27 159.4 15.6 153 13-175 188-350 (351)
159 PRK00089 era GTPase Era; Revie 99.9 1.5E-22 3.3E-27 155.5 16.1 168 13-186 4-180 (292)
160 TIGR03594 GTPase_EngA ribosome 99.9 2.2E-22 4.7E-27 162.5 17.4 162 12-180 170-347 (429)
161 PRK12297 obgE GTPase CgtA; Rev 99.9 3.5E-22 7.6E-27 158.3 17.7 161 16-182 160-332 (424)
162 cd04163 Era Era subfamily. Er 99.9 2.3E-22 5E-27 141.8 14.7 156 14-175 3-167 (168)
163 cd01895 EngA2 EngA2 subfamily. 99.9 2.7E-22 5.9E-27 142.4 14.8 156 14-175 2-173 (174)
164 cd00881 GTP_translation_factor 99.9 2.8E-22 6E-27 144.5 14.7 155 16-176 1-186 (189)
165 KOG1673 Ras GTPases [General f 99.9 1.9E-22 4.2E-27 134.2 12.6 178 7-187 13-196 (205)
166 PRK12296 obgE GTPase CgtA; Rev 99.9 2.8E-22 6E-27 160.8 15.6 164 15-181 160-344 (500)
167 PRK00454 engB GTP-binding prot 99.9 1.1E-21 2.3E-26 142.4 16.4 161 9-178 19-195 (196)
168 KOG3883 Ras family small GTPas 99.9 1.7E-21 3.8E-26 129.4 15.7 170 11-181 6-179 (198)
169 KOG0074 GTP-binding ADP-ribosy 99.9 1.3E-22 2.8E-27 132.9 9.2 160 12-175 15-177 (185)
170 PRK15467 ethanolamine utilizat 99.9 5.1E-22 1.1E-26 139.0 12.7 141 16-180 3-150 (158)
171 COG1159 Era GTPase [General fu 99.9 9.4E-22 2E-26 145.4 14.6 169 12-186 4-181 (298)
172 TIGR01393 lepA GTP-binding pro 99.9 1.4E-21 3.1E-26 161.6 17.4 156 15-178 4-181 (595)
173 cd01888 eIF2_gamma eIF2-gamma 99.9 7.7E-22 1.7E-26 143.7 13.7 160 15-178 1-200 (203)
174 PRK12298 obgE GTPase CgtA; Rev 99.9 1.2E-21 2.6E-26 154.5 15.8 168 16-186 161-342 (390)
175 cd01889 SelB_euk SelB subfamil 99.9 1.2E-21 2.6E-26 141.7 14.3 158 15-178 1-187 (192)
176 cd04105 SR_beta Signal recogni 99.9 5.1E-21 1.1E-25 139.3 16.5 120 16-135 2-124 (203)
177 TIGR03598 GTPase_YsxC ribosome 99.9 1.8E-21 3.9E-26 139.2 13.9 150 8-166 12-179 (179)
178 PRK11058 GTPase HflX; Provisio 99.9 1.3E-21 2.9E-26 155.9 14.4 157 15-179 198-364 (426)
179 TIGR03594 GTPase_EngA ribosome 99.9 1.5E-21 3.3E-26 157.5 14.8 152 16-178 1-161 (429)
180 KOG0072 GTP-binding ADP-ribosy 99.9 1.3E-22 2.8E-27 133.4 6.6 163 12-179 16-181 (182)
181 TIGR00487 IF-2 translation ini 99.9 6.8E-21 1.5E-25 157.0 18.1 152 10-174 83-247 (587)
182 PRK00093 GTP-binding protein D 99.9 3.1E-21 6.7E-26 155.9 15.3 161 12-180 171-347 (435)
183 PRK00093 GTP-binding protein D 99.9 2.6E-21 5.6E-26 156.4 14.3 150 15-175 2-160 (435)
184 CHL00189 infB translation init 99.9 6.2E-21 1.3E-25 159.5 16.7 154 11-176 241-409 (742)
185 PF00009 GTP_EFTU: Elongation 99.9 2.8E-21 6.1E-26 139.3 11.8 158 13-176 2-186 (188)
186 PRK09518 bifunctional cytidyla 99.9 7.6E-21 1.7E-25 161.1 15.7 159 13-181 449-625 (712)
187 PRK05306 infB translation init 99.9 7.6E-21 1.6E-25 160.2 15.3 153 10-175 286-450 (787)
188 TIGR00475 selB selenocysteine- 99.9 1.4E-20 3E-25 155.7 16.6 155 15-180 1-169 (581)
189 cd00880 Era_like Era (E. coli 99.9 6.3E-21 1.4E-25 133.3 12.5 151 19-175 1-162 (163)
190 PRK09554 feoB ferrous iron tra 99.9 2.1E-20 4.5E-25 158.2 17.6 154 13-176 2-167 (772)
191 PRK09518 bifunctional cytidyla 99.9 1.3E-20 2.9E-25 159.7 15.7 156 12-178 273-437 (712)
192 COG1160 Predicted GTPases [Gen 99.9 2.1E-20 4.5E-25 145.6 14.7 165 13-183 177-357 (444)
193 TIGR00437 feoB ferrous iron tr 99.9 1.7E-20 3.7E-25 155.3 14.3 146 21-176 1-154 (591)
194 COG1160 Predicted GTPases [Gen 99.8 1.5E-20 3.3E-25 146.4 12.8 152 15-177 4-165 (444)
195 COG0486 ThdF Predicted GTPase 99.8 2.6E-20 5.6E-25 145.5 13.9 159 9-179 212-378 (454)
196 PRK12317 elongation factor 1-a 99.8 2E-20 4.4E-25 150.5 13.5 156 11-169 3-197 (425)
197 PRK05433 GTP-binding protein L 99.8 7.9E-20 1.7E-24 151.5 16.4 159 13-179 6-186 (600)
198 KOG1423 Ras-like GTPase ERA [C 99.8 1.5E-19 3.2E-24 133.6 14.2 173 9-186 67-280 (379)
199 KOG0076 GTP-binding ADP-ribosy 99.8 1.2E-20 2.6E-25 128.0 7.8 161 12-179 15-189 (197)
200 cd04166 CysN_ATPS CysN_ATPS su 99.8 5.2E-20 1.1E-24 134.6 11.8 148 16-168 1-185 (208)
201 TIGR00483 EF-1_alpha translati 99.8 1E-19 2.3E-24 146.3 14.4 156 11-169 4-199 (426)
202 COG2229 Predicted GTPase [Gene 99.8 7.7E-19 1.7E-23 120.8 15.1 159 10-175 6-176 (187)
203 cd01896 DRG The developmentall 99.8 6.6E-19 1.4E-23 130.6 15.8 152 16-176 2-225 (233)
204 cd01884 EF_Tu EF-Tu subfamily. 99.8 9E-19 2E-23 126.3 15.7 146 14-165 2-171 (195)
205 TIGR01394 TypA_BipA GTP-bindin 99.8 2.7E-19 5.8E-24 147.9 14.4 158 16-179 3-193 (594)
206 PRK10218 GTP-binding protein; 99.8 1.2E-18 2.7E-23 143.9 17.1 161 13-179 4-197 (607)
207 TIGR03680 eif2g_arch translati 99.8 3.8E-19 8.2E-24 142.0 13.6 162 12-177 2-196 (406)
208 TIGR00491 aIF-2 translation in 99.8 7.9E-19 1.7E-23 144.6 15.6 154 14-176 4-215 (590)
209 cd04168 TetM_like Tet(M)-like 99.8 9.7E-19 2.1E-23 129.9 14.4 113 16-134 1-130 (237)
210 cd01876 YihA_EngB The YihA (En 99.8 1.4E-18 3E-23 122.7 14.5 151 16-175 1-169 (170)
211 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 2.5E-19 5.5E-24 123.3 9.3 167 12-183 8-175 (216)
212 PRK04000 translation initiatio 99.8 9.3E-19 2E-23 139.7 14.0 159 11-177 6-201 (411)
213 PRK10512 selenocysteinyl-tRNA- 99.8 3.2E-18 6.9E-23 142.2 16.5 155 15-178 1-167 (614)
214 COG0218 Predicted GTPase [Gene 99.8 6.7E-18 1.5E-22 118.8 15.2 162 8-178 18-198 (200)
215 KOG4423 GTP-binding protein-li 99.8 5.6E-21 1.2E-25 131.0 -0.2 171 11-182 22-199 (229)
216 PF10662 PduV-EutP: Ethanolami 99.8 2.3E-18 5.1E-23 115.9 11.8 135 16-173 3-142 (143)
217 PRK04004 translation initiatio 99.8 5.3E-18 1.1E-22 140.2 16.2 156 12-176 4-217 (586)
218 cd01883 EF1_alpha Eukaryotic e 99.8 1E-18 2.3E-23 128.7 10.4 147 16-166 1-194 (219)
219 PRK12736 elongation factor Tu; 99.8 6.3E-18 1.4E-22 134.5 15.4 160 11-176 9-200 (394)
220 KOG1707 Predicted Ras related/ 99.8 1.1E-18 2.5E-23 138.7 9.6 168 9-177 4-175 (625)
221 COG0370 FeoB Fe2+ transport sy 99.8 6.8E-18 1.5E-22 137.3 14.1 158 13-180 2-167 (653)
222 cd04167 Snu114p Snu114p subfam 99.8 5.3E-18 1.1E-22 124.5 12.0 112 16-133 2-136 (213)
223 TIGR00485 EF-Tu translation el 99.8 1.5E-17 3.2E-22 132.6 14.9 147 11-163 9-179 (394)
224 PRK12735 elongation factor Tu; 99.8 3.6E-17 7.9E-22 130.3 15.8 160 11-176 9-202 (396)
225 cd04165 GTPBP1_like GTPBP1-lik 99.8 2.6E-17 5.7E-22 121.2 13.3 152 16-173 1-219 (224)
226 CHL00071 tufA elongation facto 99.8 4.9E-17 1.1E-21 130.0 15.5 148 11-164 9-180 (409)
227 KOG1489 Predicted GTP-binding 99.7 3.7E-17 8E-22 121.6 13.0 155 16-175 198-365 (366)
228 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 2.9E-17 6.2E-22 120.5 12.2 170 16-187 1-186 (232)
229 cd04104 p47_IIGP_like p47 (47- 99.7 5.9E-17 1.3E-21 117.5 13.1 159 14-181 1-188 (197)
230 COG2262 HflX GTPases [General 99.7 2E-16 4.2E-21 121.9 15.8 161 11-180 189-359 (411)
231 PLN03126 Elongation factor Tu; 99.7 2.7E-16 5.9E-21 127.1 15.8 147 11-163 78-248 (478)
232 KOG0077 Vesicle coat complex C 99.7 2.6E-17 5.6E-22 111.1 8.1 157 12-175 18-191 (193)
233 cd04169 RF3 RF3 subfamily. Pe 99.7 1.6E-16 3.5E-21 119.9 13.1 115 15-135 3-138 (267)
234 PRK05124 cysN sulfate adenylyl 99.7 1.3E-16 2.8E-21 129.4 13.4 153 11-168 24-216 (474)
235 COG0532 InfB Translation initi 99.7 3.4E-16 7.5E-21 124.2 15.1 155 12-179 3-172 (509)
236 COG1084 Predicted GTPase [Gene 99.7 3.5E-16 7.6E-21 117.2 14.1 160 12-178 166-337 (346)
237 PRK00049 elongation factor Tu; 99.7 5.3E-16 1.2E-20 123.5 16.1 147 11-163 9-179 (396)
238 PLN00043 elongation factor 1-a 99.7 3.6E-16 7.7E-21 125.9 15.2 150 12-167 5-203 (447)
239 TIGR02034 CysN sulfate adenyly 99.7 1E-16 2.2E-21 128.0 12.0 148 15-167 1-187 (406)
240 cd01886 EF-G Elongation factor 99.7 1.4E-16 3E-21 120.4 11.7 114 16-135 1-131 (270)
241 PLN03127 Elongation factor Tu; 99.7 5.7E-16 1.2E-20 124.6 15.6 159 12-176 59-251 (447)
242 PRK00741 prfC peptide chain re 99.7 4E-16 8.7E-21 127.6 14.4 117 12-134 8-145 (526)
243 cd01885 EF2 EF2 (for archaea a 99.7 4.8E-16 1E-20 114.0 13.5 112 16-133 2-138 (222)
244 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 9E-16 1.9E-20 111.3 14.6 163 15-180 1-187 (196)
245 PTZ00141 elongation factor 1- 99.7 4.3E-16 9.3E-21 125.5 14.1 152 11-167 4-203 (446)
246 KOG1145 Mitochondrial translat 99.7 9.7E-16 2.1E-20 121.4 15.7 156 7-176 146-315 (683)
247 PF01926 MMR_HSR1: 50S ribosom 99.7 2E-16 4.4E-21 105.1 10.1 104 16-129 1-116 (116)
248 KOG1191 Mitochondrial GTPase [ 99.7 1.1E-16 2.4E-21 125.3 9.9 168 12-181 266-454 (531)
249 COG0536 Obg Predicted GTPase [ 99.7 5.9E-16 1.3E-20 116.5 13.0 162 16-181 161-337 (369)
250 cd01850 CDC_Septin CDC/Septin. 99.7 1.5E-15 3.2E-20 115.3 15.1 144 13-162 3-187 (276)
251 cd04170 EF-G_bact Elongation f 99.7 8.3E-16 1.8E-20 116.7 12.4 114 16-135 1-131 (268)
252 cd01899 Ygr210 Ygr210 subfamil 99.7 1.3E-15 2.8E-20 117.2 13.2 162 17-182 1-274 (318)
253 TIGR00503 prfC peptide chain r 99.7 1.6E-15 3.6E-20 124.1 14.5 117 11-133 8-145 (527)
254 PRK13351 elongation factor G; 99.7 6.4E-16 1.4E-20 131.2 12.4 117 12-134 6-139 (687)
255 PF09439 SRPRB: Signal recogni 99.7 1.7E-16 3.6E-21 111.7 6.6 119 14-135 3-127 (181)
256 PRK05506 bifunctional sulfate 99.7 1.4E-15 3E-20 127.9 13.3 153 10-167 20-211 (632)
257 PTZ00327 eukaryotic translatio 99.6 3.6E-15 7.8E-20 119.9 13.1 162 12-177 32-233 (460)
258 PRK12739 elongation factor G; 99.6 9.4E-15 2E-19 124.0 15.5 117 12-134 6-139 (691)
259 COG5256 TEF1 Translation elong 99.6 2.9E-15 6.2E-20 115.6 11.0 158 11-168 4-202 (428)
260 COG1163 DRG Predicted GTPase [ 99.6 4.2E-14 9.2E-19 105.9 15.2 161 12-180 61-292 (365)
261 COG3596 Predicted GTPase [Gene 99.6 6.1E-15 1.3E-19 108.2 10.1 165 10-179 35-224 (296)
262 KOG0462 Elongation factor-type 99.6 2E-14 4.3E-19 114.1 13.4 165 12-182 58-240 (650)
263 PRK09602 translation-associate 99.6 3.6E-14 7.9E-19 112.4 15.1 82 15-96 2-113 (396)
264 TIGR00484 EF-G translation elo 99.6 1.3E-14 2.9E-19 123.1 13.3 118 12-135 8-142 (689)
265 KOG0090 Signal recognition par 99.6 6.6E-14 1.4E-18 98.8 12.1 156 15-175 39-237 (238)
266 PRK00007 elongation factor G; 99.6 1.1E-13 2.5E-18 117.4 16.0 117 11-133 7-140 (693)
267 PRK09866 hypothetical protein; 99.6 1.5E-13 3.3E-18 112.2 15.9 109 62-174 230-350 (741)
268 PF04548 AIG1: AIG1 family; I 99.5 7.4E-14 1.6E-18 102.3 11.2 164 15-182 1-191 (212)
269 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1.5E-13 3.3E-18 104.2 12.9 128 11-139 35-172 (313)
270 COG4917 EutP Ethanolamine util 99.5 6.9E-14 1.5E-18 90.4 8.9 136 16-174 3-143 (148)
271 cd01853 Toc34_like Toc34-like 99.5 1.4E-13 3E-18 102.7 11.8 126 9-136 26-165 (249)
272 PRK12740 elongation factor G; 99.5 8.5E-14 1.8E-18 118.1 11.7 108 20-133 1-125 (668)
273 cd00066 G-alpha G protein alph 99.5 3.1E-13 6.7E-18 104.7 13.5 120 59-179 158-313 (317)
274 PRK13768 GTPase; Provisional 99.5 2E-13 4.3E-18 102.5 10.8 115 63-179 98-249 (253)
275 PF05783 DLIC: Dynein light in 99.5 1.2E-12 2.6E-17 105.3 15.4 169 12-182 23-269 (472)
276 TIGR00101 ureG urease accessor 99.5 1.3E-12 2.7E-17 94.7 13.4 101 62-177 92-196 (199)
277 COG0481 LepA Membrane GTPase L 99.5 1.2E-12 2.6E-17 102.6 13.7 160 13-180 8-189 (603)
278 KOG3905 Dynein light intermedi 99.5 1.6E-12 3.4E-17 97.5 13.7 166 13-180 51-293 (473)
279 smart00275 G_alpha G protein a 99.5 9.9E-13 2.1E-17 102.7 13.2 120 60-180 182-337 (342)
280 TIGR02836 spore_IV_A stage IV 99.5 1.8E-12 3.8E-17 101.1 13.5 155 13-173 16-233 (492)
281 KOG1490 GTP-binding protein CR 99.5 3.2E-13 6.8E-18 106.4 9.5 169 11-183 165-347 (620)
282 PRK14845 translation initiatio 99.5 1.6E-12 3.4E-17 112.9 14.5 104 64-176 528-672 (1049)
283 TIGR00490 aEF-2 translation el 99.5 4.4E-13 9.5E-18 114.2 10.5 116 12-133 17-151 (720)
284 PTZ00258 GTP-binding protein; 99.5 2.9E-12 6.3E-17 100.7 14.2 84 12-96 19-126 (390)
285 KOG1532 GTPase XAB1, interacts 99.5 6.4E-13 1.4E-17 97.4 9.4 173 8-184 13-271 (366)
286 PF05049 IIGP: Interferon-indu 99.4 1.3E-12 2.9E-17 101.6 11.2 161 12-181 33-222 (376)
287 TIGR00157 ribosome small subun 99.4 8.2E-13 1.8E-17 98.7 9.4 96 73-174 24-120 (245)
288 KOG0458 Elongation factor 1 al 99.4 1.5E-12 3.2E-17 104.3 11.0 168 12-183 175-389 (603)
289 COG2895 CysN GTPases - Sulfate 99.4 3.5E-12 7.5E-17 96.7 12.3 151 11-166 3-192 (431)
290 KOG1707 Predicted Ras related/ 99.4 6.7E-12 1.4E-16 100.6 14.4 167 7-180 418-586 (625)
291 cd01882 BMS1 Bms1. Bms1 is an 99.4 7.1E-12 1.5E-16 92.7 12.9 142 10-165 35-184 (225)
292 COG1217 TypA Predicted membran 99.4 4.9E-12 1.1E-16 99.1 12.2 160 15-180 6-198 (603)
293 PRK09435 membrane ATPase/prote 99.4 5.1E-12 1.1E-16 97.6 11.2 104 61-177 148-260 (332)
294 TIGR00073 hypB hydrogenase acc 99.4 7.1E-12 1.5E-16 91.6 11.2 56 120-175 148-205 (207)
295 PRK09601 GTP-binding protein Y 99.4 2.4E-11 5.1E-16 94.6 14.1 81 15-96 3-107 (364)
296 KOG0461 Selenocysteine-specifi 99.4 2.4E-11 5.3E-16 92.0 13.5 163 13-181 6-197 (522)
297 smart00010 small_GTPase Small 99.4 9.5E-12 2.1E-16 83.3 10.1 113 15-166 1-115 (124)
298 PTZ00416 elongation factor 2; 99.4 3.5E-12 7.5E-17 110.2 9.9 116 12-133 17-157 (836)
299 PLN00116 translation elongatio 99.4 3.6E-12 7.8E-17 110.3 9.8 117 11-133 16-163 (843)
300 PF03029 ATP_bind_1: Conserved 99.4 4.1E-13 8.9E-18 99.6 3.3 113 63-176 92-236 (238)
301 PRK07560 elongation factor EF- 99.3 3.8E-11 8.2E-16 102.8 13.9 116 12-133 18-152 (731)
302 COG5257 GCD11 Translation init 99.3 1.6E-11 3.4E-16 92.2 8.9 166 12-185 8-210 (415)
303 TIGR00750 lao LAO/AO transport 99.3 2.7E-11 5.8E-16 93.4 10.2 104 61-177 126-238 (300)
304 PF00350 Dynamin_N: Dynamin fa 99.3 2.6E-11 5.5E-16 85.8 8.9 63 63-130 102-168 (168)
305 KOG1144 Translation initiation 99.3 3.2E-11 6.9E-16 99.2 10.4 162 10-180 471-690 (1064)
306 KOG3886 GTP-binding protein [S 99.3 1.3E-11 2.9E-16 88.4 7.0 147 14-162 4-164 (295)
307 cd01900 YchF YchF subfamily. 99.3 6E-11 1.3E-15 89.5 10.8 79 17-96 1-103 (274)
308 COG3276 SelB Selenocysteine-sp 99.3 9.7E-11 2.1E-15 91.5 11.8 153 16-177 2-162 (447)
309 COG0378 HypB Ni2+-binding GTPa 99.2 5.2E-11 1.1E-15 83.6 7.6 55 122-176 144-200 (202)
310 PF00735 Septin: Septin; Inte 99.2 2.7E-10 5.9E-15 86.6 11.6 141 13-159 3-183 (281)
311 TIGR00993 3a0901s04IAP86 chlor 99.2 2.2E-10 4.7E-15 94.4 11.7 121 11-135 115-251 (763)
312 KOG0082 G-protein alpha subuni 99.2 1E-09 2.2E-14 84.6 14.5 121 59-180 192-347 (354)
313 KOG1954 Endocytosis/signaling 99.2 1.7E-10 3.7E-15 88.2 10.1 127 3-134 47-225 (532)
314 COG0480 FusA Translation elong 99.2 1E-10 2.2E-15 98.3 9.0 118 11-134 7-142 (697)
315 PF03308 ArgK: ArgK protein; 99.1 3.1E-11 6.7E-16 88.8 3.9 147 12-174 27-227 (266)
316 COG0012 Predicted GTPase, prob 99.1 8.5E-10 1.8E-14 85.0 11.1 84 14-97 2-109 (372)
317 smart00053 DYNc Dynamin, GTPas 99.1 1.1E-09 2.4E-14 81.2 11.1 69 62-135 125-207 (240)
318 KOG1486 GTP-binding protein DR 99.1 4.9E-09 1.1E-13 76.5 14.0 90 12-102 60-156 (364)
319 COG0050 TufB GTPases - transla 99.1 1.1E-09 2.4E-14 81.4 10.8 142 11-161 9-177 (394)
320 COG1703 ArgK Putative periplas 99.1 3.2E-10 6.9E-15 84.7 7.6 155 11-178 48-255 (323)
321 KOG3887 Predicted small GTPase 99.1 1.1E-09 2.3E-14 79.3 8.8 172 13-186 26-211 (347)
322 PRK10463 hydrogenase nickel in 99.1 3.8E-10 8.2E-15 85.2 6.8 56 120-175 230-287 (290)
323 COG4108 PrfC Peptide chain rel 99.1 1.2E-09 2.5E-14 85.4 9.3 118 12-135 10-148 (528)
324 KOG0410 Predicted GTP binding 99.1 3.4E-10 7.3E-15 85.2 6.0 155 11-181 175-345 (410)
325 cd01859 MJ1464 MJ1464. This f 99.0 8E-10 1.7E-14 77.2 7.1 95 76-178 3-97 (156)
326 PF00503 G-alpha: G-protein al 99.0 5.6E-09 1.2E-13 83.5 12.5 116 60-176 234-389 (389)
327 PRK00098 GTPase RsgA; Reviewed 99.0 1.7E-09 3.7E-14 83.3 8.5 88 81-173 76-163 (298)
328 cd01858 NGP_1 NGP-1. Autoanti 99.0 1.4E-09 3E-14 76.1 7.1 56 13-71 101-156 (157)
329 KOG0705 GTPase-activating prot 99.0 2.5E-09 5.4E-14 85.6 9.0 163 13-182 29-194 (749)
330 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1.2E-09 2.6E-14 75.0 6.4 54 16-72 85-138 (141)
331 cd01855 YqeH YqeH. YqeH is an 99.0 3.6E-09 7.9E-14 76.3 9.1 94 75-177 24-125 (190)
332 cd04178 Nucleostemin_like Nucl 99.0 1.5E-09 3.3E-14 76.8 6.9 57 12-71 115-171 (172)
333 KOG0468 U5 snRNP-specific prot 99.0 3.8E-09 8.2E-14 86.4 9.9 115 12-132 126-261 (971)
334 PRK12289 GTPase RsgA; Reviewed 99.0 3E-09 6.6E-14 83.2 8.8 92 77-175 81-173 (352)
335 cd01854 YjeQ_engC YjeQ/EngC. 99.0 4.8E-09 1E-13 80.4 8.8 89 79-174 72-161 (287)
336 PRK12288 GTPase RsgA; Reviewed 98.9 1E-08 2.2E-13 80.3 9.9 88 82-174 117-205 (347)
337 KOG2655 Septin family protein 98.9 7.2E-08 1.6E-12 74.6 12.9 145 12-162 19-202 (366)
338 COG5019 CDC3 Septin family pro 98.9 5.9E-08 1.3E-12 74.6 11.6 139 12-156 21-200 (373)
339 cd01856 YlqF YlqF. Proteins o 98.8 1E-08 2.2E-13 72.7 6.9 58 12-72 113-170 (171)
340 PF09547 Spore_IV_A: Stage IV 98.8 2.8E-07 6.1E-12 72.4 14.7 155 13-173 16-233 (492)
341 cd01859 MJ1464 MJ1464. This f 98.8 1.4E-08 3E-13 70.9 7.0 56 13-71 100-155 (156)
342 TIGR03596 GTPase_YlqF ribosome 98.8 1.2E-08 2.6E-13 77.8 7.2 58 12-72 116-173 (276)
343 KOG1143 Predicted translation 98.8 2.8E-08 6.1E-13 76.5 8.9 156 7-168 160-379 (591)
344 PRK09563 rbgA GTPase YlqF; Rev 98.8 1.8E-08 3.9E-13 77.3 7.8 58 12-72 119-176 (287)
345 COG5258 GTPBP1 GTPase [General 98.8 6.2E-08 1.3E-12 74.9 9.6 164 9-179 112-340 (527)
346 KOG2486 Predicted GTPase [Gene 98.8 7.6E-09 1.6E-13 76.5 4.6 156 10-174 132-313 (320)
347 KOG1547 Septin CDC10 and relat 98.7 2.7E-07 5.7E-12 67.1 11.4 154 12-171 44-237 (336)
348 cd01855 YqeH YqeH. YqeH is an 98.7 2.1E-08 4.5E-13 72.4 5.8 55 14-71 127-189 (190)
349 COG1161 Predicted GTPases [Gen 98.7 2.3E-08 5.1E-13 77.7 6.3 58 12-72 130-187 (322)
350 TIGR03597 GTPase_YqeH ribosome 98.7 6.9E-08 1.5E-12 76.3 8.6 95 72-175 50-151 (360)
351 COG5192 BMS1 GTP-binding prote 98.7 2.2E-07 4.7E-12 75.3 11.4 141 9-162 64-211 (1077)
352 cd01849 YlqF_related_GTPase Yl 98.7 3.8E-08 8.2E-13 68.7 6.3 57 12-71 98-154 (155)
353 cd01856 YlqF YlqF. Proteins o 98.7 7.4E-08 1.6E-12 68.3 7.6 99 69-177 2-101 (171)
354 KOG0464 Elongation factor G [T 98.7 9.1E-09 2E-13 80.2 3.1 121 8-134 31-168 (753)
355 KOG0460 Mitochondrial translat 98.7 1.5E-07 3.4E-12 71.6 9.3 141 12-160 52-218 (449)
356 KOG0447 Dynamin-like GTP bindi 98.7 1.2E-06 2.5E-11 70.9 14.3 139 7-149 301-508 (980)
357 cd01858 NGP_1 NGP-1. Autoanti 98.7 1.4E-07 3.1E-12 65.9 7.9 91 81-176 4-94 (157)
358 cd01849 YlqF_related_GTPase Yl 98.6 1.8E-07 3.9E-12 65.2 7.6 85 87-177 1-85 (155)
359 TIGR03596 GTPase_YlqF ribosome 98.6 1.9E-07 4.1E-12 71.3 8.3 101 69-179 4-105 (276)
360 cd01851 GBP Guanylate-binding 98.6 1.2E-06 2.6E-11 64.8 12.2 88 12-100 5-106 (224)
361 KOG0463 GTP-binding protein GP 98.6 5.3E-07 1.1E-11 69.8 10.1 168 7-182 126-362 (641)
362 KOG1491 Predicted GTP-binding 98.6 9.7E-08 2.1E-12 72.6 6.0 88 10-97 16-126 (391)
363 PRK14974 cell division protein 98.6 1.1E-07 2.4E-12 74.0 6.4 93 62-169 223-322 (336)
364 KOG0466 Translation initiation 98.6 6.2E-08 1.3E-12 72.7 4.5 115 62-184 125-248 (466)
365 KOG0467 Translation elongation 98.6 1.6E-07 3.4E-12 78.1 7.0 115 9-132 4-136 (887)
366 TIGR00092 GTP-binding protein 98.6 2.1E-07 4.6E-12 72.8 6.8 81 15-97 3-109 (368)
367 PRK10416 signal recognition pa 98.6 9.2E-07 2E-11 68.6 10.2 142 13-169 113-302 (318)
368 PRK12289 GTPase RsgA; Reviewed 98.5 1.5E-07 3.1E-12 73.9 5.7 58 16-76 174-238 (352)
369 PRK12288 GTPase RsgA; Reviewed 98.5 1.7E-07 3.7E-12 73.5 5.8 57 17-76 208-271 (347)
370 PRK09563 rbgA GTPase YlqF; Rev 98.5 4.7E-07 1E-11 69.5 7.8 101 69-179 7-108 (287)
371 KOG0448 Mitofusin 1 GTPase, in 98.5 3E-06 6.5E-11 70.1 12.6 144 12-161 107-310 (749)
372 TIGR00064 ftsY signal recognit 98.5 9.5E-07 2.1E-11 67.1 8.6 94 61-169 154-260 (272)
373 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 5.9E-07 1.3E-11 61.6 6.7 78 80-163 6-83 (141)
374 KOG0099 G protein subunit Galp 98.5 1.3E-06 2.8E-11 64.4 8.1 122 57-179 197-371 (379)
375 KOG1487 GTP-binding protein DR 98.5 2.2E-06 4.8E-11 63.2 9.3 90 14-104 59-155 (358)
376 KOG1424 Predicted GTP-binding 98.4 3.9E-07 8.4E-12 72.9 5.7 61 9-72 309-369 (562)
377 TIGR00157 ribosome small subun 98.4 4.4E-07 9.5E-12 68.0 5.7 57 16-76 122-185 (245)
378 COG1618 Predicted nucleotide k 98.4 3.2E-05 6.9E-10 53.2 13.5 149 12-178 3-177 (179)
379 PF03193 DUF258: Protein of un 98.4 4.1E-07 8.9E-12 63.1 4.3 59 15-76 36-101 (161)
380 TIGR03597 GTPase_YqeH ribosome 98.4 9.2E-07 2E-11 70.0 6.5 56 15-73 155-215 (360)
381 PRK13796 GTPase YqeH; Provisio 98.4 6.4E-07 1.4E-11 71.0 5.6 56 15-73 161-221 (365)
382 PRK01889 GTPase RsgA; Reviewed 98.4 2.1E-06 4.6E-11 67.8 8.5 85 82-173 109-193 (356)
383 cd03112 CobW_like The function 98.4 2.7E-06 5.9E-11 59.5 7.8 21 17-37 3-23 (158)
384 KOG0085 G protein subunit Galp 98.4 9E-07 1.9E-11 64.1 5.2 124 55-179 192-351 (359)
385 TIGR03348 VI_IcmF type VI secr 98.4 8.1E-06 1.8E-10 73.8 12.5 114 17-135 114-258 (1169)
386 PRK13796 GTPase YqeH; Provisio 98.3 5.7E-06 1.2E-10 65.7 9.2 94 73-175 57-157 (365)
387 KOG0459 Polypeptide release fa 98.3 6.4E-07 1.4E-11 69.7 3.5 159 11-170 76-279 (501)
388 KOG0465 Mitochondrial elongati 98.3 1.3E-06 2.9E-11 71.3 5.3 119 12-136 37-172 (721)
389 TIGR01425 SRP54_euk signal rec 98.3 1.4E-05 3E-10 64.2 10.7 113 13-133 99-252 (429)
390 PRK00098 GTPase RsgA; Reviewed 98.2 2.6E-06 5.6E-11 65.8 6.1 57 16-75 166-229 (298)
391 cd01854 YjeQ_engC YjeQ/EngC. 98.2 2.5E-06 5.3E-11 65.5 5.8 59 15-76 162-227 (287)
392 COG1162 Predicted GTPases [Gen 98.2 1.1E-05 2.5E-10 61.2 9.1 95 76-174 70-164 (301)
393 KOG2484 GTPase [General functi 98.2 1.6E-06 3.4E-11 67.5 4.3 60 9-71 247-306 (435)
394 COG1162 Predicted GTPases [Gen 98.2 2.4E-06 5.3E-11 64.7 4.6 58 16-76 166-230 (301)
395 cd03115 SRP The signal recogni 98.2 1.4E-05 2.9E-10 56.8 8.3 83 61-155 82-170 (173)
396 PRK14722 flhF flagellar biosyn 98.1 1.9E-05 4.2E-10 62.4 8.8 143 12-158 135-315 (374)
397 cd03114 ArgK-like The function 98.1 1.7E-05 3.8E-10 54.7 7.3 58 61-131 91-148 (148)
398 PF00448 SRP54: SRP54-type pro 98.1 2.2E-06 4.7E-11 62.0 2.5 85 62-159 84-175 (196)
399 cd03110 Fer4_NifH_child This p 98.0 0.00022 4.7E-09 50.9 12.1 86 60-156 91-176 (179)
400 PRK00771 signal recognition pa 98.0 1.1E-05 2.4E-10 65.1 5.8 135 12-158 93-266 (437)
401 KOG3859 Septins (P-loop GTPase 98.0 4.7E-05 1E-09 56.9 8.5 119 10-134 38-190 (406)
402 KOG4273 Uncharacterized conser 98.0 0.00022 4.7E-09 52.6 11.4 162 15-182 5-227 (418)
403 PRK10867 signal recognition pa 98.0 2.3E-05 5E-10 63.2 7.0 86 61-159 183-275 (433)
404 PRK13695 putative NTPase; Prov 98.0 0.00041 8.9E-09 49.2 12.7 82 81-177 92-173 (174)
405 TIGR00959 ffh signal recogniti 98.0 2E-05 4.3E-10 63.5 6.4 87 61-159 182-274 (428)
406 COG3523 IcmF Type VI protein s 98.0 3.6E-05 7.8E-10 68.5 8.1 111 18-135 129-271 (1188)
407 PRK14721 flhF flagellar biosyn 97.9 2.8E-05 6.1E-10 62.4 6.7 153 13-178 190-383 (420)
408 PRK12727 flagellar biosynthesi 97.9 0.00013 2.7E-09 60.0 9.2 136 12-159 348-519 (559)
409 PF03266 NTPase_1: NTPase; In 97.9 3.9E-05 8.4E-10 54.1 5.6 135 16-165 1-163 (168)
410 COG0523 Putative GTPases (G3E 97.9 0.00034 7.4E-09 54.4 11.2 98 62-169 85-193 (323)
411 PRK11537 putative GTP-binding 97.9 0.00019 4.2E-09 55.9 9.8 86 62-158 91-186 (318)
412 KOG2423 Nucleolar GTPase [Gene 97.9 5.6E-06 1.2E-10 64.6 1.3 85 10-100 303-389 (572)
413 cd01983 Fer4_NifH The Fer4_Nif 97.8 0.00021 4.5E-09 45.1 7.6 97 17-128 2-99 (99)
414 KOG2485 Conserved ATP/GTP bind 97.8 4.8E-05 1E-09 57.7 4.9 61 11-72 140-206 (335)
415 PRK12726 flagellar biosynthesi 97.7 0.00024 5.2E-09 56.2 8.5 136 12-159 204-377 (407)
416 PRK14738 gmk guanylate kinase; 97.7 5.5E-05 1.2E-09 55.3 4.1 37 1-38 1-37 (206)
417 PRK05703 flhF flagellar biosyn 97.7 0.0003 6.4E-09 57.0 8.6 106 61-179 299-415 (424)
418 PRK12724 flagellar biosynthesi 97.7 4.8E-05 1E-09 60.8 4.0 142 14-168 223-405 (432)
419 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00022 4.7E-09 40.2 5.4 45 84-131 12-58 (58)
420 PRK14737 gmk guanylate kinase; 97.7 3.7E-05 8.1E-10 55.2 2.9 25 14-38 4-28 (186)
421 PF13207 AAA_17: AAA domain; P 97.7 4.5E-05 9.8E-10 50.6 3.2 22 16-37 1-22 (121)
422 cd02042 ParA ParA and ParB of 97.6 0.00028 6.1E-09 45.5 6.6 79 17-106 2-81 (104)
423 cd02038 FleN-like FleN is a me 97.6 0.00019 4.1E-09 49.1 5.9 105 19-132 5-109 (139)
424 COG0563 Adk Adenylate kinase a 97.6 5.6E-05 1.2E-09 53.8 3.1 22 16-37 2-23 (178)
425 COG1419 FlhF Flagellar GTP-bin 97.6 0.0023 5.1E-08 50.8 12.2 158 14-183 203-400 (407)
426 KOG1534 Putative transcription 97.6 7.9E-05 1.7E-09 53.5 3.7 22 14-35 3-24 (273)
427 PRK08118 topology modulation p 97.6 6.1E-05 1.3E-09 53.1 3.2 22 16-37 3-24 (167)
428 COG0194 Gmk Guanylate kinase [ 97.5 3.8E-05 8.3E-10 54.1 1.6 46 15-61 5-50 (191)
429 PRK07261 topology modulation p 97.5 7.9E-05 1.7E-09 52.8 3.1 22 16-37 2-23 (171)
430 PF13521 AAA_28: AAA domain; P 97.5 7.2E-05 1.6E-09 52.5 2.7 22 16-37 1-22 (163)
431 PRK06995 flhF flagellar biosyn 97.5 0.00016 3.5E-09 59.0 4.9 23 14-36 256-278 (484)
432 PF13671 AAA_33: AAA domain; P 97.5 9E-05 2E-09 50.7 2.9 21 17-37 2-22 (143)
433 cd00009 AAA The AAA+ (ATPases 97.5 0.00098 2.1E-08 45.2 8.0 25 14-38 19-43 (151)
434 COG3640 CooC CO dehydrogenase 97.5 0.002 4.4E-08 47.3 9.4 47 80-132 150-197 (255)
435 TIGR02475 CobW cobalamin biosy 97.4 0.0022 4.9E-08 50.5 10.5 21 17-37 7-27 (341)
436 PRK14723 flhF flagellar biosyn 97.4 0.00022 4.7E-09 61.2 5.1 152 14-178 185-380 (767)
437 KOG0469 Elongation factor 2 [T 97.4 0.00012 2.7E-09 59.1 3.3 125 13-143 18-174 (842)
438 cd02019 NK Nucleoside/nucleoti 97.4 0.00015 3.2E-09 43.1 3.0 21 17-37 2-22 (69)
439 PF11111 CENP-M: Centromere pr 97.4 0.02 4.3E-07 40.1 14.9 145 9-179 10-155 (176)
440 COG0541 Ffh Signal recognition 97.4 0.00016 3.5E-09 57.4 3.8 121 4-132 90-251 (451)
441 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00075 1.6E-08 45.5 6.3 23 16-38 24-46 (133)
442 PRK06731 flhF flagellar biosyn 97.4 0.0017 3.8E-08 49.3 8.7 131 15-158 76-245 (270)
443 KOG1533 Predicted GTPase [Gene 97.4 1.9E-05 4E-10 57.5 -1.8 69 61-133 96-176 (290)
444 KOG1970 Checkpoint RAD17-RFC c 97.4 0.002 4.4E-08 52.8 9.3 44 88-132 196-239 (634)
445 PF03215 Rad17: Rad17 cell cyc 97.3 0.002 4.4E-08 53.5 9.5 22 16-37 47-68 (519)
446 KOG3929 Uncharacterized conser 97.3 0.00018 3.8E-09 53.3 3.0 89 12-102 43-136 (363)
447 PF13555 AAA_29: P-loop contai 97.3 0.00023 5.1E-09 41.0 2.9 22 16-37 25-46 (62)
448 KOG0780 Signal recognition par 97.3 0.00019 4.2E-09 56.1 3.3 104 10-113 97-241 (483)
449 PF04665 Pox_A32: Poxvirus A32 97.3 0.00018 4E-09 53.4 3.0 32 7-38 6-37 (241)
450 COG1126 GlnQ ABC-type polar am 97.3 0.00025 5.4E-09 51.4 3.3 23 16-38 30-52 (240)
451 PF00005 ABC_tran: ABC transpo 97.3 0.00023 5E-09 48.3 3.0 23 16-38 13-35 (137)
452 TIGR03263 guanyl_kin guanylate 97.3 0.0003 6.5E-09 50.2 3.7 23 16-38 3-25 (180)
453 cd03111 CpaE_like This protein 97.3 0.0011 2.3E-08 43.1 5.9 103 17-129 2-106 (106)
454 COG1136 SalX ABC-type antimicr 97.3 0.00023 4.9E-09 52.3 2.9 23 16-38 33-55 (226)
455 PRK06217 hypothetical protein; 97.2 0.00029 6.2E-09 50.5 3.1 22 16-37 3-24 (183)
456 PF13238 AAA_18: AAA domain; P 97.2 0.00029 6.3E-09 47.1 2.9 21 17-37 1-21 (129)
457 PF00004 AAA: ATPase family as 97.2 0.00032 6.9E-09 47.1 3.0 21 17-37 1-21 (132)
458 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0046 9.9E-08 44.0 9.0 24 15-38 26-49 (177)
459 PRK14530 adenylate kinase; Pro 97.2 0.00032 6.9E-09 51.6 3.2 21 16-36 5-25 (215)
460 PLN02459 probable adenylate ki 97.2 0.00047 1E-08 51.8 4.1 34 3-36 18-51 (261)
461 PF03205 MobB: Molybdopterin g 97.2 0.00037 8.1E-09 47.6 3.2 22 16-37 2-23 (140)
462 PF02367 UPF0079: Uncharacteri 97.2 0.0013 2.9E-08 43.6 5.7 24 15-38 16-39 (123)
463 PLN02840 tRNA dimethylallyltra 97.2 0.004 8.8E-08 50.1 9.3 101 14-130 21-121 (421)
464 cd00071 GMPK Guanosine monopho 97.2 0.00035 7.6E-09 47.6 3.0 21 17-37 2-22 (137)
465 PRK03839 putative kinase; Prov 97.2 0.00037 7.9E-09 49.8 3.2 22 16-37 2-23 (180)
466 COG1116 TauB ABC-type nitrate/ 97.2 0.00032 7E-09 51.8 2.9 23 16-38 31-53 (248)
467 smart00382 AAA ATPases associa 97.2 0.0004 8.7E-09 46.7 3.2 26 15-40 3-28 (148)
468 COG0552 FtsY Signal recognitio 97.2 0.00084 1.8E-08 51.8 5.1 142 12-168 137-326 (340)
469 PRK04195 replication factor C 97.2 0.0062 1.3E-07 50.5 10.5 24 14-37 39-62 (482)
470 TIGR02322 phosphon_PhnN phosph 97.2 0.00037 8E-09 49.7 3.0 22 16-37 3-24 (179)
471 PRK08233 hypothetical protein; 97.1 0.00043 9.3E-09 49.4 3.2 24 14-37 3-26 (182)
472 PRK10078 ribose 1,5-bisphospho 97.1 0.00042 9E-09 49.8 3.1 22 16-37 4-25 (186)
473 PRK05480 uridine/cytidine kina 97.1 0.00048 1E-08 50.4 3.4 26 12-37 4-29 (209)
474 COG4088 Predicted nucleotide k 97.1 0.0037 8.1E-08 45.1 7.7 119 17-150 4-138 (261)
475 COG3840 ThiQ ABC-type thiamine 97.1 0.00056 1.2E-08 48.3 3.4 24 15-38 26-49 (231)
476 cd02023 UMPK Uridine monophosp 97.1 0.00043 9.2E-09 50.2 3.0 21 17-37 2-22 (198)
477 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00041 9E-09 49.7 2.9 22 15-36 4-25 (188)
478 TIGR00235 udk uridine kinase. 97.1 0.00056 1.2E-08 50.0 3.6 26 12-37 4-29 (207)
479 PRK13949 shikimate kinase; Pro 97.1 0.00051 1.1E-08 48.6 3.2 22 16-37 3-24 (169)
480 PRK10646 ADP-binding protein; 97.1 0.0042 9.2E-08 42.9 7.5 23 16-38 30-52 (153)
481 PRK01889 GTPase RsgA; Reviewed 97.1 0.00057 1.2E-08 54.2 3.6 25 15-39 196-220 (356)
482 cd01131 PilT Pilus retraction 97.1 0.0021 4.6E-08 46.6 6.3 22 17-38 4-25 (198)
483 cd00820 PEPCK_HprK Phosphoenol 97.1 0.00052 1.1E-08 44.3 2.7 21 15-35 16-36 (107)
484 cd02025 PanK Pantothenate kina 97.1 0.00046 1E-08 50.9 2.8 21 17-37 2-22 (220)
485 cd02036 MinD Bacterial cell di 97.1 0.0074 1.6E-07 42.7 9.0 84 63-155 64-147 (179)
486 cd03238 ABC_UvrA The excision 97.0 0.00059 1.3E-08 48.5 3.1 24 12-35 19-42 (176)
487 PLN02200 adenylate kinase fami 97.0 0.00086 1.9E-08 50.0 4.1 26 12-37 41-66 (234)
488 PRK14531 adenylate kinase; Pro 97.0 0.00058 1.3E-08 48.9 3.1 24 14-37 2-25 (183)
489 KOG2203 GTP-binding protein [G 97.0 0.00034 7.5E-09 57.0 2.0 57 15-71 38-97 (772)
490 PRK10751 molybdopterin-guanine 97.0 0.00077 1.7E-08 47.6 3.5 25 13-37 5-29 (173)
491 COG3638 ABC-type phosphate/pho 97.0 0.00055 1.2E-08 50.2 2.8 21 16-36 32-52 (258)
492 KOG1424 Predicted GTP-binding 97.0 0.0014 3E-08 53.2 5.3 74 82-161 171-244 (562)
493 cd01130 VirB11-like_ATPase Typ 97.0 0.00066 1.4E-08 48.8 3.2 24 14-37 25-48 (186)
494 cd01428 ADK Adenylate kinase ( 97.0 0.00052 1.1E-08 49.5 2.6 22 16-37 1-22 (194)
495 PTZ00088 adenylate kinase 1; P 97.0 0.00063 1.4E-08 50.5 3.0 24 14-37 6-29 (229)
496 COG1120 FepC ABC-type cobalami 97.0 0.00061 1.3E-08 51.1 2.9 21 16-36 30-50 (258)
497 PRK14532 adenylate kinase; Pro 97.0 0.00069 1.5E-08 48.7 3.1 22 16-37 2-23 (188)
498 COG1936 Predicted nucleotide k 97.0 0.00066 1.4E-08 47.4 2.8 20 16-35 2-21 (180)
499 PRK08356 hypothetical protein; 97.0 0.00098 2.1E-08 48.3 3.8 22 15-36 6-27 (195)
500 TIGR01351 adk adenylate kinase 97.0 0.00058 1.2E-08 50.1 2.6 21 16-36 1-21 (210)
No 1
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.5e-43 Score=232.00 Aligned_cols=202 Identities=66% Similarity=1.085 Sum_probs=189.4
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCc-cceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPT-IGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
......+||+++|.+|+|||||+.+|....|++..++ .|.++....+.+++...++.+|||+|+++|+++.+.+++.+-
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaq 85 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQ 85 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCc
Confidence 5667889999999999999999999999999665555 999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 167 (211)
++|+|||++..++|..+.. |+.++..+...+++-.++|+||+|...++.|..++...|++.+++.|+++||++.++++.
T Consensus 86 GiIlVYDVT~Rdtf~kLd~-W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 86 GIILVYDVTSRDTFVKLDI-WLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQC 164 (209)
T ss_pred eeEEEEEccchhhHHhHHH-HHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence 9999999999999999966 999999998899999999999999988899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300 168 CFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211 (211)
Q Consensus 168 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
.|+++++++.+-+...++.+...+.++..+....-+.+.+||||
T Consensus 165 ~FeelveKIi~tp~l~~~~n~~~~~~i~~~p~~~~~~~~g~~Cs 208 (209)
T KOG0080|consen 165 CFEELVEKIIETPSLWEEGNSSAGLDIASDPDGEASAHQGGCCS 208 (209)
T ss_pred HHHHHHHHHhcCcchhhccCCccccccccCCCcccccccCCccC
Confidence 99999999999999999988888888887666677778888996
No 2
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.2e-42 Score=236.36 Aligned_cols=200 Identities=49% Similarity=0.796 Sum_probs=180.0
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
..++..+||+++|+.|+|||.|+.||..+.| +.+..|.|.++..+.+.+++..+++++|||+|+++|++....++++++
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ah 83 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 83 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCC
Confidence 4568899999999999999999999999999 789999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe-EEEeeccCCCcHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVE 166 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~ 166 (211)
++|+|||+++.+||.++.. |+.+++.+ ...++|.++|+||+|+.+.+.+..++++.++..++++ |+++||+++.+|+
T Consensus 84 Gii~vyDiT~~~SF~~v~~-Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe 161 (205)
T KOG0084|consen 84 GIIFVYDITKQESFNNVKR-WIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVE 161 (205)
T ss_pred eEEEEEEcccHHHhhhHHH-HHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHH
Confidence 9999999999999999999 99999988 6678999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300 167 QCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211 (211)
Q Consensus 167 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
+.|..|...+..........+......... .+++.....++||+
T Consensus 162 ~~F~~la~~lk~~~~~~~~~~~~~~~~~ql-~~~p~~~~~~~~C~ 205 (205)
T KOG0084|consen 162 DAFLTLAKELKQRKGLHVKWSTASLESVQL-KGTPVKKSNGGCCE 205 (205)
T ss_pred HHHHHHHHHHHHhcccCCCCCcCCCCceee-CCCCcccccCCCCC
Confidence 999999999999887766665322222222 22566677778996
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-42 Score=234.54 Aligned_cols=197 Identities=40% Similarity=0.667 Sum_probs=173.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDD-LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
...+||+++|..++|||||+.|+..+.|.. ..+|.|-.+....+.+.+..+++.+|||+|+++|.++.++++++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 568999999999999999999999999955 5899999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
+|||+++.+||..+.. |...+... ..+++-+.+|+||+|+.+.+++..+++..++...+..|+++||+++.|++++|.
T Consensus 83 vvYDit~~~SF~~aK~-WvkeL~~~-~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~ 160 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKN-WVKELQRQ-ASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQ 160 (200)
T ss_pred EEEecccHHHHHHHHH-HHHHHHhh-CCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHH
Confidence 9999999999999999 99999887 448889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300 171 QLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211 (211)
Q Consensus 171 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
.|.+.+............-........+.+ +++..++|||
T Consensus 161 ~Ia~~lp~~~~~~~~~~~~~~~g~~l~~~~-~~~~~~~~C~ 200 (200)
T KOG0092|consen 161 AIAEKLPCSDPQERQGLPNRRQGVDLNSNQ-EPARPSGCCA 200 (200)
T ss_pred HHHHhccCccccccccccccccceecccCC-CCcCcCCcCC
Confidence 999999988876654211111222222222 7888999997
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-41 Score=230.13 Aligned_cols=199 Identities=37% Similarity=0.593 Sum_probs=171.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
-+.+||+++|..++||||||++++.+.| ..|..|.|.++....+.+.+..+.+++|||+|+++|+.+.+.+++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 3459999999999999999999999999 789999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
+|||+++.+||++... |+..+.......++-+++|+||.||.+++++..++....++++++.|+++||+.|.||+.+|.
T Consensus 100 iVyDit~~~Sfe~t~k-Wi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSK-WIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred EEEeccccchHHHHHH-HHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence 9999999999999999 988887665666799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccchhccc--ccccccccccCCCCCCCCCCCCCCC
Q 028300 171 QLALKIMEVPSLLEEG--SNVVKRNILKQKPENQSPPIGGCCS 211 (211)
Q Consensus 171 ~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
.|...+.+........ +...--++.....+++.++-++|||
T Consensus 179 rIaa~l~~~~~~~~~~~~~~~~~i~~k~~~~~~~~s~~~~~~C 221 (221)
T KOG0094|consen 179 RIAAALPGMEVLEILSKQESMVDINLKGSPNEQQASKPGLCSC 221 (221)
T ss_pred HHHHhccCccccccccccccceeEEccCCCCcccccCCCCCCC
Confidence 9888888775532111 1122222222233334444567988
No 5
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=238.65 Aligned_cols=211 Identities=91% Similarity=1.337 Sum_probs=189.9
Q ss_pred CCCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchh
Q 028300 1 MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTS 80 (211)
Q Consensus 1 ~~~~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (211)
||+....+......+||+|+|++|+|||||+++|....+..+.++.+.++....+.+++..+.+.|||+||++.+..++.
T Consensus 1 ~~~~~~~~~~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 80 (211)
T PLN03118 1 MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTS 80 (211)
T ss_pred CCcccccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHH
Confidence 78888888999999999999999999999999999988888888888888777788888889999999999999999999
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300 81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK 160 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 160 (211)
.+++.+|++|+|||++++++++++...|...+..+....+.|+++|+||+|+.....+..++...++...+++|+++||+
T Consensus 81 ~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk 160 (211)
T PLN03118 81 SYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAK 160 (211)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCC
Confidence 99999999999999999999999988788877655445678999999999997777777777778888888999999999
Q ss_pred CCCcHHHHHHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300 161 TRENVEQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
++.|++++|++|...+.+.....++.....+++..++....+.|.+.+|||
T Consensus 161 ~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
T PLN03118 161 TRENVEQCFEELALKIMEVPSLLEEGSTAVKRNILKQKPEHQPPPNGGCCS 211 (211)
T ss_pred CCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccccccCCCCcCCCCC
Confidence 999999999999999999988888888888999999988888899999987
No 6
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.1e-38 Score=230.02 Aligned_cols=195 Identities=33% Similarity=0.571 Sum_probs=169.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC-CEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA-GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
+||+++|++|||||||+++|..+.+ ..+.++.+.++....+.+. +..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999888 5677888888777777777 7789999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhc---cCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC-CeEEEeeccCCCcHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYS---TNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG-SLFLECSAKTRENVEQC 168 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l 168 (211)
||++++++++.+.. |...+.... ...++|++||+||+|+.+.+.+..++..+++...+ .+|+++||++|.|++++
T Consensus 81 ~D~t~~~s~~~~~~-~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 81 FDVTRPSTFEAVLK-WKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA 159 (201)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence 99999999999987 777765432 23678999999999997667778888889998888 68999999999999999
Q ss_pred HHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCC
Q 028300 169 FEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCC 210 (211)
Q Consensus 169 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (211)
|++|.+.+.+......+.....+.......++.+.....+||
T Consensus 160 f~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (201)
T cd04107 160 MRFLVKNILANDKNLQQAETPEDGSVIDLKQTTTKKKSKGCC 201 (201)
T ss_pred HHHHHHHHHHhchhhHhhcCCCcccccccccceeccccCCCC
Confidence 999999999888777777766666666777777788888999
No 7
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-38 Score=220.11 Aligned_cols=170 Identities=54% Similarity=0.885 Sum_probs=163.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
+++..+||+++|.++||||+|+.++..+.| ..+..+.|.++..+.+.+++..+.+++|||+|+++|+++...+++.+++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 788999999999999999999999999999 7899999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC 168 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 168 (211)
+++|||+++..||+++.. |+..++.+ ...++|+++|+||+|+...+.|..+..+.++..+|++|+|+||++|.+|++.
T Consensus 88 i~LvyDitne~Sfeni~~-W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRN-WIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred eEEEEEccchHHHHHHHH-HHHHHHhh-CCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence 999999999999999999 99999988 5669999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 028300 169 FEQLALKIMEVPS 181 (211)
Q Consensus 169 ~~~i~~~~~~~~~ 181 (211)
|-.+.+.+++...
T Consensus 166 F~~La~~i~~k~~ 178 (207)
T KOG0078|consen 166 FLSLARDILQKLE 178 (207)
T ss_pred HHHHHHHHHhhcc
Confidence 9999999997543
No 8
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-37 Score=216.63 Aligned_cols=180 Identities=48% Similarity=0.763 Sum_probs=168.8
Q ss_pred CCCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccch
Q 028300 1 MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLT 79 (211)
Q Consensus 1 ~~~~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 79 (211)
|+.....+...+..+||+++|++++|||-|+.++..++| .+..+|.|.++....+.++++.++.++|||+|+++|+...
T Consensus 1 ~~~~~~~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAit 80 (222)
T KOG0087|consen 1 MARRRDKSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAIT 80 (222)
T ss_pred CCCccCCccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhcccc
Confidence 555566678899999999999999999999999999999 7788999999999999999999999999999999999999
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec
Q 028300 80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA 159 (211)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 159 (211)
..+++.+-+.++|||++...+|+++.. |+.+++.+ ...++++++|+||+||...+.+..++.+.++...+..++++||
T Consensus 81 SaYYrgAvGAllVYDITr~~Tfenv~r-WL~ELRdh-ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSA 158 (222)
T KOG0087|consen 81 SAYYRGAVGALLVYDITRRQTFENVER-WLKELRDH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSA 158 (222)
T ss_pred chhhcccceeEEEEechhHHHHHHHHH-HHHHHHhc-CCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecc
Confidence 999999999999999999999999988 99999988 6679999999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHhccch
Q 028300 160 KTRENVEQCFEQLALKIMEVPSL 182 (211)
Q Consensus 160 ~~~~gv~~l~~~i~~~~~~~~~~ 182 (211)
.+..+++..|..++..+...-..
T Consensus 159 l~~tNVe~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 159 LDATNVEKAFERVLTEIYKIVSK 181 (222)
T ss_pred cccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988876543
No 9
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=2.5e-36 Score=218.78 Aligned_cols=166 Identities=45% Similarity=0.817 Sum_probs=148.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+.|+++|..|||||||++++..+.| ..+.++.+.++....+.+++..+.+.+||++|++.|..++..+++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 3689999999999999999999999 667788888888888888888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-CCeEEEeeccCCCcHHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-GSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
|++++++|+++.. |...+... ...++|+++|+||+|+.+.+++...+..+++..+ ++.|+++||++|.||+++|.++
T Consensus 81 Dvtd~~Sf~~l~~-w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 81 DITKKETFDDLPK-WMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred ECcCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999987 88887655 3467999999999999877888888888888775 7899999999999999999999
Q ss_pred HHHHHhccch
Q 028300 173 ALKIMEVPSL 182 (211)
Q Consensus 173 ~~~~~~~~~~ 182 (211)
++.+.+....
T Consensus 159 ~~~~~~~~~~ 168 (202)
T cd04120 159 VDDILKKMPL 168 (202)
T ss_pred HHHHHHhCcc
Confidence 9988775433
No 10
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=3.1e-36 Score=216.36 Aligned_cols=166 Identities=40% Similarity=0.675 Sum_probs=150.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
.+..+||+++|..|+|||||+++|..+.+ ..+.++.+.++....+.+++..+.+.+||++|++.|..++..+++.+|++
T Consensus 3 ~~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 3 YDYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CCceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999888 56667888888777788888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
|+|||++++.+|+++.. |++.+... ..++|++||+||.|+...+.+..++++.++..++++|++|||++|.||+++|
T Consensus 83 llVfD~t~~~Sf~~~~~-w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 83 ILVYDITNRWSFDGIDR-WIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF 159 (189)
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 99999999999999987 88888765 3589999999999998878888899999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 028300 170 EQLALKIMEV 179 (211)
Q Consensus 170 ~~i~~~~~~~ 179 (211)
++|.+.+...
T Consensus 160 ~~l~~~i~~~ 169 (189)
T cd04121 160 TELARIVLMR 169 (189)
T ss_pred HHHHHHHHHh
Confidence 9999877643
No 11
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=2.2e-36 Score=205.94 Aligned_cols=172 Identities=37% Similarity=0.652 Sum_probs=157.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
.....+||+++|++|+|||||++++.+.+| ..+..+.|.++..+.+.+++..+.+++|||+|+++|.++.-.+++.+|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 345679999999999999999999999999 7899999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhcc---CCCccEEEEeecCCCCCC--cccCHHHHHHHHHHcC-CeEEEeeccCC
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYST---NQDCVKMLVGNKVDRDSE--RVVSREEGIALAKEHG-SLFLECSAKTR 162 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~viv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~ 162 (211)
.++|||++++.||+++.. |+.++-.+.. +...|+||++||+|+... +.+....++.++...+ +||||+||+..
T Consensus 85 Cvlvydv~~~~Sfe~L~~-Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~ 163 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLEN-WRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEA 163 (210)
T ss_pred EEEEeecCChhhhccHHH-HHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccc
Confidence 999999999999999999 9888765533 356799999999999653 7889999999988754 89999999999
Q ss_pred CcHHHHHHHHHHHHHhccch
Q 028300 163 ENVEQCFEQLALKIMEVPSL 182 (211)
Q Consensus 163 ~gv~~l~~~i~~~~~~~~~~ 182 (211)
.+|.+.|+.+...++.....
T Consensus 164 ~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 164 TNVDEAFEEIARRALANEDR 183 (210)
T ss_pred ccHHHHHHHHHHHHHhccch
Confidence 99999999999999988865
No 12
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.3e-35 Score=215.69 Aligned_cols=195 Identities=43% Similarity=0.689 Sum_probs=162.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
+..+||+|+|++|||||||+++|.+..+ ..+.++.+.++....+...+..+.+.+||+||++.+..++..+++++|+++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 4579999999999999999999999988 567788888877777777788889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
+|||++++++++.+.. |+..+... ....|++||+||+|+.+...+...+...++...+++|+++||+++.|++++|+
T Consensus 84 lv~D~~~~~s~~~~~~-~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 84 VVYDVTNGESFVNVKR-WLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFN 160 (199)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence 9999999999999987 88777654 45789999999999987777777888888888889999999999999999999
Q ss_pred HHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCC
Q 028300 171 QLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCC 210 (211)
Q Consensus 171 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (211)
+|...+............... .......+...+.+..||
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 199 (199)
T cd04110 161 CITELVLRAKKDNLAKQQQQQ-QNDVVKLPKNSKRKKRCC 199 (199)
T ss_pred HHHHHHHHhhhccCcccccCC-ccccCccchhccccccCC
Confidence 999999876554433333222 223445555667788888
No 13
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=3.9e-35 Score=215.56 Aligned_cols=167 Identities=49% Similarity=0.809 Sum_probs=149.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
.+..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.|||++|++++..++..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 45679999999999999999999999888 56778888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
|+|||++++.+++.+.. |+..+... ...++|+++|+||+|+.+.+.+..++...++..++++|+++||+++.|++++|
T Consensus 89 ilv~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf 166 (216)
T PLN03110 89 LLVYDITKRQTFDNVQR-WLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAF 166 (216)
T ss_pred EEEEECCChHHHHHHHH-HHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999988 88777655 34689999999999998777788888888888889999999999999999999
Q ss_pred HHHHHHHHhc
Q 028300 170 EQLALKIMEV 179 (211)
Q Consensus 170 ~~i~~~~~~~ 179 (211)
++|+..+...
T Consensus 167 ~~l~~~i~~~ 176 (216)
T PLN03110 167 QTILLEIYHI 176 (216)
T ss_pred HHHHHHHHHH
Confidence 9999988664
No 14
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-36 Score=203.78 Aligned_cols=167 Identities=51% Similarity=0.854 Sum_probs=156.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
....+|++++|+.|||||+|+.+++...| +.+..|.|.++-.+.+.+++..+++++|||+|++.|++....+++.+-+.
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 45679999999999999999999999999 77778999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
|+|||++..++|..+.. |+..++.+ ..+++.+++++||+||...+.|..++.+.|+++++..++++||+++.|++++|
T Consensus 83 lLVydit~r~sF~hL~~-wL~D~rq~-~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF 160 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTS-WLEDARQH-SNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAF 160 (216)
T ss_pred EEEEEccchhhHHHHHH-HHHHHHHh-cCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHH
Confidence 99999999999999999 88888776 47899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 028300 170 EQLALKIMEV 179 (211)
Q Consensus 170 ~~i~~~~~~~ 179 (211)
..+...+...
T Consensus 161 ~nta~~Iy~~ 170 (216)
T KOG0098|consen 161 INTAKEIYRK 170 (216)
T ss_pred HHHHHHHHHH
Confidence 8777666544
No 15
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.1e-35 Score=212.56 Aligned_cols=189 Identities=44% Similarity=0.751 Sum_probs=156.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVD--DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
+||+++|++|||||||++++..+.+. .+.++.+.++....+.+++..+.+.|||+||+..+...+..+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999998873 5667777777766677888889999999999999988889999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
||+++.++++++.. |...+... ...++|+++|+||+|+...+.+..++...++..++++|+++||+++.|++++|.+|
T Consensus 81 ~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l 158 (191)
T cd04112 81 YDITNKASFDNIRA-WLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAV 158 (191)
T ss_pred EECCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999988 88877765 34578999999999997667777778888888889999999999999999999999
Q ss_pred HHHHHhccchhcccccccccccccCCCCCCCCCCCCCC
Q 028300 173 ALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCC 210 (211)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (211)
.+.+.+.....+...... .....++-.++.+||
T Consensus 159 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 191 (191)
T cd04112 159 AKELKHRKYEQPDEGKFK-----ISDYVTKQKKISRCC 191 (191)
T ss_pred HHHHHHhccccCCCCcEE-----eccccCcccccCCCC
Confidence 999987754432222211 233345556678898
No 16
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=2e-35 Score=216.32 Aligned_cols=187 Identities=34% Similarity=0.535 Sum_probs=150.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD 94 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (211)
+||+++|.+|+|||||+++|..+.|..+.++.+..+....+ ..+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 58999999999999999999999986667777766553332 56789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC-------------------CcccCHHHHHHHHHHcC----
Q 028300 95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS-------------------ERVVSREEGIALAKEHG---- 151 (211)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~-------------------~~~v~~~~~~~~~~~~~---- 151 (211)
++++++|+++...|..... . ...++|++||+||+|+.+ .+.+..++++.+++..+
T Consensus 77 vt~~~Sf~~l~~~~~~l~~-~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~ 154 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTD-T-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM 154 (220)
T ss_pred CCCHHHHHHHHHHHHHHHH-h-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence 9999999999885555443 2 345799999999999965 57788899999998876
Q ss_pred ----------CeEEEeeccCCCcHHHHHHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCC
Q 028300 152 ----------SLFLECSAKTRENVEQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCC 210 (211)
Q Consensus 152 ----------~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (211)
++|++|||++|.||+++|.++++.+.............. .....+.+.+..|.+||
T Consensus 155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 220 (220)
T cd04126 155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQRAEANRT---QGTVNLPNPKRSKSKCC 220 (220)
T ss_pred ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhhhhhhhh---hccccCCCcccCCCCCC
Confidence 689999999999999999999998887655444422222 22223344556778888
No 17
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2e-35 Score=213.39 Aligned_cols=185 Identities=35% Similarity=0.525 Sum_probs=150.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD 94 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (211)
||+++|.+|||||||+++|..+.+ ..+.++.+..+ .....+++..+.+.+||++|++++..++..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999998888 44566666444 3445677888899999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhhcc--CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300 95 VTRRETFTNLSDVWAKEVDLYST--NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
+++.++++.+.. |...+..... ..++|+++|+||+|+...+.+...+...++..++++|+++||++|.|++++|+++
T Consensus 80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l 158 (190)
T cd04144 80 ITSRSTFERVER-FREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL 158 (190)
T ss_pred CCCHHHHHHHHH-HHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999988 7666654322 3578999999999997777778777888888889999999999999999999999
Q ss_pred HHHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300 173 ALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211 (211)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
++.+.+...... .....+..+..++.+|||
T Consensus 159 ~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 188 (190)
T cd04144 159 VRALRQQRQGGQ---------GPKGGPTKKKEKKKRKCV 188 (190)
T ss_pred HHHHHHhhcccC---------CCcCCCCCcccccccCce
Confidence 998876554421 124455556666677775
No 18
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-36 Score=196.37 Aligned_cols=176 Identities=46% Similarity=0.780 Sum_probs=163.7
Q ss_pred CCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhh
Q 028300 4 SSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSY 82 (211)
Q Consensus 4 ~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 82 (211)
.....+.++..+||.++|...+|||||+.+++...| .....+.|.++..+++.-....+.+++|||.|++.|+.+...+
T Consensus 11 ~~s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTay 90 (193)
T KOG0093|consen 11 KDSIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAY 90 (193)
T ss_pred cccccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHH
Confidence 334557788899999999999999999999999999 7788899999999888877788999999999999999999999
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCC
Q 028300 83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTR 162 (211)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (211)
+++++++|++||.++.+||..+.. |.-.+..+ ...+.|+++|+||+|+..++.+..+..+.++.++|..|||+||+.+
T Consensus 91 yRgamgfiLmyDitNeeSf~svqd-w~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~N 168 (193)
T KOG0093|consen 91 YRGAMGFILMYDITNEESFNSVQD-WITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKEN 168 (193)
T ss_pred hhccceEEEEEecCCHHHHHHHHH-HHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccccc
Confidence 999999999999999999999999 99999877 7789999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhccc
Q 028300 163 ENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 163 ~gv~~l~~~i~~~~~~~~~ 181 (211)
.+++++|+.++..+.+...
T Consensus 169 inVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 169 INVKQVFERLVDIICDKMS 187 (193)
T ss_pred ccHHHHHHHHHHHHHHHhh
Confidence 9999999999998877654
No 19
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=7e-35 Score=210.30 Aligned_cols=185 Identities=43% Similarity=0.665 Sum_probs=157.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|||||||+++|..+.+. .+.++.+.++....+.+++..+.+.+||++|...+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999884 47888888887777888888899999999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
|+++++++..+.. |+..+..+ ....+|+++|+||+|+.+...+...+...++...+++|+++||+++.|++++|.+++
T Consensus 81 d~~~~~s~~~i~~-~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~ 158 (188)
T cd04125 81 DVTDQESFENLKF-WINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV 158 (188)
T ss_pred ECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999988 88887765 345689999999999987777777888888888889999999999999999999999
Q ss_pred HHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300 174 LKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211 (211)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
+.+.++....+ ..-.+-++.+.+..||+
T Consensus 159 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 186 (188)
T cd04125 159 KLIIKRLEEQE----------LSPKNIKQQFKKKNNCF 186 (188)
T ss_pred HHHHHHhhcCc----------CCccccccccccccCcc
Confidence 99876533221 12245566677788886
No 20
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=6.1e-35 Score=210.69 Aligned_cols=166 Identities=37% Similarity=0.598 Sum_probs=143.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
...+||+++|.+|+|||||++++..+.+ ..+.++.+..+ ...+.+++..+.+.+||+||++++..++..+++.+|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 3469999999999999999999999888 56667776555 455677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
+|||++++++++++.. |...+.......++|+++|+||+|+.+...+...+...++..++++|+++||+++.|++++|.
T Consensus 82 lv~D~s~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~ 160 (189)
T PTZ00369 82 CVYSITSRSSFEEIAS-FREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFY 160 (189)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHH
Confidence 9999999999999988 777665554456899999999999977677777777778888889999999999999999999
Q ss_pred HHHHHHHhc
Q 028300 171 QLALKIMEV 179 (211)
Q Consensus 171 ~i~~~~~~~ 179 (211)
+|++.+.+.
T Consensus 161 ~l~~~l~~~ 169 (189)
T PTZ00369 161 ELVREIRKY 169 (189)
T ss_pred HHHHHHHHH
Confidence 999887654
No 21
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=1.5e-34 Score=212.48 Aligned_cols=165 Identities=36% Similarity=0.560 Sum_probs=145.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECC-EEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAG-KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
+||+++|++|||||||+++|....+ ..+.++.+.++....+.+++ ..+.+.+||++|+..+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999888 66788888888777777754 578999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhcc--CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYST--NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
||++++++++.+.. |...+..... ..++|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|+
T Consensus 81 ~D~t~~~s~~~~~~-w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 81 YDVTNSQSFENLED-WYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999987 8888765532 24578999999999987777888888888888999999999999999999999
Q ss_pred HHHHHHHhcc
Q 028300 171 QLALKIMEVP 180 (211)
Q Consensus 171 ~i~~~~~~~~ 180 (211)
+|.+.+....
T Consensus 160 ~l~~~l~~~~ 169 (215)
T cd04109 160 QLAAELLGVD 169 (215)
T ss_pred HHHHHHHhcc
Confidence 9999988753
No 22
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.7e-34 Score=204.33 Aligned_cols=163 Identities=52% Similarity=0.855 Sum_probs=145.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
.+||+++|++|+|||||++++..+.+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999988 55667778888777778888889999999999999999899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
||++++++++.+.. |...+... ...+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|.++
T Consensus 82 ~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 82 YDITRRSTYNHLSS-WLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred EECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999988 77776544 34678999999999998777788888888888889999999999999999999999
Q ss_pred HHHHHh
Q 028300 173 ALKIME 178 (211)
Q Consensus 173 ~~~~~~ 178 (211)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T cd04122 160 AKKIYQ 165 (166)
T ss_pred HHHHhh
Confidence 987754
No 23
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2e-34 Score=212.18 Aligned_cols=171 Identities=27% Similarity=0.506 Sum_probs=148.7
Q ss_pred CCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhcc
Q 028300 6 GQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYR 84 (211)
Q Consensus 6 ~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 84 (211)
+.++.....+||+++|++|||||+|+++|..+.| ..+.|+.+..+. ..+.+++..+.+.||||+|++.|..+...+++
T Consensus 5 ~~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~ 83 (232)
T cd04174 5 RIPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYS 83 (232)
T ss_pred ccCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcC
Confidence 3445667789999999999999999999999988 667788876664 45677888999999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC------------CcccCHHHHHHHHHHcCC
Q 028300 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS------------ERVVSREEGIALAKEHGS 152 (211)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~------------~~~v~~~~~~~~~~~~~~ 152 (211)
++|++|+|||++++++|+++...|...+... ..+.|+++|+||+|+.+ .+.+..+++.+++..+++
T Consensus 84 ~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~ 161 (232)
T cd04174 84 DSDAVLLCFDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGA 161 (232)
T ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCC
Confidence 9999999999999999999754599888765 35789999999999854 256888999999999998
Q ss_pred -eEEEeeccCCC-cHHHHHHHHHHHHHhc
Q 028300 153 -LFLECSAKTRE-NVEQCFEQLALKIMEV 179 (211)
Q Consensus 153 -~~~~~Sa~~~~-gv~~l~~~i~~~~~~~ 179 (211)
+|++|||++|. ||+++|..++..+.+.
T Consensus 162 ~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 162 EVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 69999999997 8999999999987764
No 24
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.3e-34 Score=206.95 Aligned_cols=163 Identities=28% Similarity=0.571 Sum_probs=143.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
...+||+++|.+|+|||||++++..+.| ..+.|+.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4678999999999999999999999998 667788876554 56778888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC------------CcccCHHHHHHHHHHcCC-eEEEe
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS------------ERVVSREEGIALAKEHGS-LFLEC 157 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~~~ 157 (211)
+|||+++++||+++...|...+... .++.|+++|+||+|+.+ .+.+..+++.++++.+++ +|++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 9999999999999855599888765 35799999999999854 345888999999999996 89999
Q ss_pred eccCCCc-HHHHHHHHHHHHH
Q 028300 158 SAKTREN-VEQCFEQLALKIM 177 (211)
Q Consensus 158 Sa~~~~g-v~~l~~~i~~~~~ 177 (211)
||+++.| |+++|..+++.+.
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999988654
No 25
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=9e-36 Score=195.88 Aligned_cols=167 Identities=50% Similarity=0.818 Sum_probs=157.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
.+.-++.+|+|++|+|||+|+.++....| ..|..+.|.++..+++.+++..+++.+||++|++.|+.+...+++..+++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 34557889999999999999999999998 78999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
++|||+++.+||.++.. |+++++.. .+.+|-++|+||.|.++.+.+..++++.++...++.+|++|++.+++++.+|
T Consensus 85 ~vVYDVTn~ESF~Nv~r-WLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKR-WLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred EEEEECcchhhhHhHHH-HHHHHHhc--CccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 99999999999999999 99998865 6689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 028300 170 EQLALKIMEVP 180 (211)
Q Consensus 170 ~~i~~~~~~~~ 180 (211)
.-|.+.++...
T Consensus 162 ~cit~qvl~~k 172 (198)
T KOG0079|consen 162 HCITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHHH
Confidence 99998887665
No 26
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=2e-34 Score=204.85 Aligned_cols=160 Identities=31% Similarity=0.626 Sum_probs=141.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|.+|+|||||+.++..+.| ..+.+|.+..+ ...+.+++..+.+.+|||+|+++|..+...+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999 56788887665 345677888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc----------ccCHHHHHHHHHHcCC-eEEEeeccCC
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER----------VVSREEGIALAKEHGS-LFLECSAKTR 162 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~----------~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (211)
|+++++||+++...|...+... ..++|++||+||+|+.+.+ .+..++...+++..+. +|++|||+++
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~ 158 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHY--APNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ 158 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence 9999999999854499888765 3579999999999996542 4778889999999887 6999999999
Q ss_pred CcHHHHHHHHHHHHH
Q 028300 163 ENVEQCFEQLALKIM 177 (211)
Q Consensus 163 ~gv~~l~~~i~~~~~ 177 (211)
.||+++|+.+++.+.
T Consensus 159 ~nV~~~F~~~~~~~~ 173 (176)
T cd04133 159 QNVKAVFDAAIKVVL 173 (176)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999998763
No 27
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=4e-34 Score=202.66 Aligned_cols=164 Identities=55% Similarity=0.891 Sum_probs=146.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
..+||+++|++|+|||||++++.+..+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 468999999999999999999999998 6678888888877777888888999999999999998888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 171 (211)
|||+++++++.++.. |+..+..+ ...++|+++|+||+|+.+...+..++...++..++.+++++||+++.|++++|.+
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 82 VYDITDEKSFENIRN-WMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT 159 (167)
T ss_pred EEECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999988 88877655 3467999999999999877777777788888888999999999999999999999
Q ss_pred HHHHHHh
Q 028300 172 LALKIME 178 (211)
Q Consensus 172 i~~~~~~ 178 (211)
+.+.+..
T Consensus 160 i~~~~~~ 166 (167)
T cd01867 160 LAKDIKK 166 (167)
T ss_pred HHHHHHh
Confidence 9998764
No 28
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=2.8e-34 Score=205.80 Aligned_cols=166 Identities=39% Similarity=0.681 Sum_probs=145.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC----------CEEEEEEEEeCCChhhhccchh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA----------GKRLKLTIWDTAGQERFRTLTS 80 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~----------~~~~~~~l~D~~g~~~~~~~~~ 80 (211)
+..+||+++|++|||||||++++..+.+ ..+.++.+.++....+.+. +..+.+.+||+||++++..++.
T Consensus 2 ~~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 2 DYLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 3569999999999999999999999888 6667787777766555543 3568899999999999999999
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300 81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK 160 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 160 (211)
.+++++|++++|||+++++++.++.. |+..+.......+.|+++|+||+|+.+.+.+..++..+++..++++++++||+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak 160 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNVRN-WMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAA 160 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 99999999999999999999999988 88887765445688999999999998777788888888999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHh
Q 028300 161 TRENVEQCFEQLALKIME 178 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~~~ 178 (211)
++.|++++|++|.+.+.+
T Consensus 161 ~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 161 TGTNVEKAVERLLDLVMK 178 (180)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999987764
No 29
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=2.7e-34 Score=204.21 Aligned_cols=163 Identities=37% Similarity=0.590 Sum_probs=143.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
.+||+++|.+|+|||||++++..+.+ ..+.++.+..+. ..+.+++..+.+.+||++|+.++..++..+++.+|++++|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 58999999999999999999999988 466677765443 4567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
||++++.+++.+.. |...+.......++|+++|+||+|+.+.+.+..++...+++.++++|++|||+++.||+++|+++
T Consensus 81 ~d~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 81 YSVTDRHSFQEASE-FKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred EECCchhHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 99999999999987 77776654345689999999999998777788888888888889999999999999999999999
Q ss_pred HHHHHh
Q 028300 173 ALKIME 178 (211)
Q Consensus 173 ~~~~~~ 178 (211)
++.+.+
T Consensus 160 ~~~~~~ 165 (172)
T cd04141 160 VREIRR 165 (172)
T ss_pred HHHHHH
Confidence 988775
No 30
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=6.1e-34 Score=208.44 Aligned_cols=167 Identities=47% Similarity=0.779 Sum_probs=146.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEE-CCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTV-AGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
.+||+|+|++|||||||+++|.++.+ ..+.++.+.++....+.+ .+..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999888 445677777777766666 4567899999999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 171 (211)
|||++++++++++.. |...+........+|++||+||+|+.+...+..++...++..++++|+++||+++.|++++|++
T Consensus 82 v~D~~~~~Sf~~l~~-~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 82 VFDITNRESFEHVHD-WLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999988 7777665534557889999999999877778888888889889999999999999999999999
Q ss_pred HHHHHHhccc
Q 028300 172 LALKIMEVPS 181 (211)
Q Consensus 172 i~~~~~~~~~ 181 (211)
|.+.+.+...
T Consensus 161 l~~~~~~~~~ 170 (211)
T cd04111 161 LTQEIYERIK 170 (211)
T ss_pred HHHHHHHHhh
Confidence 9998877643
No 31
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.3e-35 Score=196.15 Aligned_cols=169 Identities=38% Similarity=0.681 Sum_probs=155.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
.....|||+++|..=+|||||+-+++.+.| .....+..-.+..+.+.+++....+.+|||+|+++|..+-+.+++.+++
T Consensus 9 g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnG 88 (218)
T KOG0088|consen 9 GKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNG 88 (218)
T ss_pred CCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCc
Confidence 346789999999999999999999999999 5666677777888888888899999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC 168 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 168 (211)
.++|||++|.+||+.+.. |..+++.. ....+-++||+||+|+.+++.+..+++..++..-|+.|+++||+++.||.++
T Consensus 89 alLVyDITDrdSFqKVKn-WV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 89 ALLVYDITDRDSFQKVKN-WVLELRTM-LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISEL 166 (218)
T ss_pred eEEEEeccchHHHHHHHH-HHHHHHHH-hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHH
Confidence 999999999999999999 99998876 4456889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 028300 169 FEQLALKIMEVP 180 (211)
Q Consensus 169 ~~~i~~~~~~~~ 180 (211)
|+.+.+.+.+..
T Consensus 167 Fe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 167 FESLTAKMIEHS 178 (218)
T ss_pred HHHHHHHHHHHh
Confidence 999999888775
No 32
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=5.6e-34 Score=205.85 Aligned_cols=163 Identities=28% Similarity=0.533 Sum_probs=141.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
..+||+++|+.|||||||+.++..+.| ..+.++.+..+. ..+.+++..+.+.+||++|++.|+.++..+++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 358999999999999999999999998 677788876554 445678888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc------------ccCHHHHHHHHHHcC-CeEEEee
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER------------VVSREEGIALAKEHG-SLFLECS 158 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~------------~v~~~~~~~~~~~~~-~~~~~~S 158 (211)
|||+++++||+++...|...+... ..++|++||+||.|+.+.. .+..++...+++.++ ++|+++|
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~S 158 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECS 158 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeC
Confidence 999999999999986688877654 3579999999999996442 356677888888888 5899999
Q ss_pred ccCCCcHHHHHHHHHHHHHh
Q 028300 159 AKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 159 a~~~~gv~~l~~~i~~~~~~ 178 (211)
|++|.||+++|.++++.+..
T Consensus 159 Ak~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 159 ALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999987754
No 33
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.9e-34 Score=203.63 Aligned_cols=161 Identities=29% Similarity=0.575 Sum_probs=140.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
.+||+++|++|+|||||++++..+.| ..+.++.+..+. ..+.+++..+.+.+|||+|++.+..+...+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 36999999999999999999999988 566777766553 5677788899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC------------CcccCHHHHHHHHHHcCC-eEEEeec
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS------------ERVVSREEGIALAKEHGS-LFLECSA 159 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~~~Sa 159 (211)
||+++++||+++...|...+... .++.|+++|+||+|+.+ .+.+..+++.+++..+++ +|++|||
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA 157 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSA 157 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECcc
Confidence 99999999999754599888765 35899999999999854 245888899999999997 7999999
Q ss_pred cCCCc-HHHHHHHHHHHHH
Q 028300 160 KTREN-VEQCFEQLALKIM 177 (211)
Q Consensus 160 ~~~~g-v~~l~~~i~~~~~ 177 (211)
++|.+ |+++|..+++..+
T Consensus 158 ~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 158 FTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CcCCcCHHHHHHHHHHHHh
Confidence 99995 9999999998654
No 34
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.5e-33 Score=204.16 Aligned_cols=187 Identities=29% Similarity=0.505 Sum_probs=151.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVD--DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
+||+|+|++|+|||||+++|..+.+. .+.++.+..+....+.+.+..+.+.+||++|..++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 58999999999999999999999884 4778888888777788888889999999999999988888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC----cccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE----RVVSREEGIALAKEHGSLFLECSAKTRENVEQC 168 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~----~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 168 (211)
||+++..+++++.. |+..+... ..+.|+++|+||+|+... ..+...+...++...+++++++||+++.|++++
T Consensus 81 ~d~~~~~s~~~~~~-~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 157 (193)
T cd04118 81 YDLTDSSSFERAKF-WVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDEL 157 (193)
T ss_pred EECCCHHHHHHHHH-HHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999877 88877654 347999999999998532 344556677777788899999999999999999
Q ss_pred HHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCC
Q 028300 169 FEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCC 210 (211)
Q Consensus 169 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (211)
|++|.+.+.+........ . +......+ +.+..++||
T Consensus 158 ~~~i~~~~~~~~~~~~~~---~-~~~~~~~~--~~~~~~~~~ 193 (193)
T cd04118 158 FQKVAEDFVSRANNQMNT---E-KGVDLGQK--KNSYFYSCC 193 (193)
T ss_pred HHHHHHHHHHhcccccCC---C-CccccCCc--CCCCCCCCC
Confidence 999999887655322111 1 22222222 335888898
No 35
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.3e-33 Score=199.63 Aligned_cols=161 Identities=48% Similarity=0.820 Sum_probs=142.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|||||||++++.+..+ ..+.++.+.++....+...+..+.+.+||++|+..+...+..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999998 566788887777666767777899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
|++++++++.+.. |...+... ....+|+++|+||+|+.+.+.+..++..+++..++++++++||+++.|++++|+++.
T Consensus 82 d~~~~~s~~~~~~-~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 82 DITNEESFNAVQD-WSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999988 88887654 345789999999999987777777777888888889999999999999999999998
Q ss_pred HHHH
Q 028300 174 LKIM 177 (211)
Q Consensus 174 ~~~~ 177 (211)
+.+.
T Consensus 160 ~~~~ 163 (165)
T cd01865 160 DIIC 163 (165)
T ss_pred HHHH
Confidence 8654
No 36
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=7.2e-34 Score=204.89 Aligned_cols=179 Identities=30% Similarity=0.526 Sum_probs=147.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC-CEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA-GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
+||+++|++|+|||||+++|.++.+ ..+.++.+..+.. .+... +..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999988 5566666655533 34444 6678999999999999998898999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC----cccCHHHHHHHHHHcCC-eEEEeeccCCCcHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE----RVVSREEGIALAKEHGS-LFLECSAKTRENVEQ 167 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~----~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~ 167 (211)
||+++.++++++...|...+... ..++|+++|+||+|+... +.+...+..+++..+++ +++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 157 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEE 157 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHH
Confidence 99999999999976688777654 458999999999998543 24667788888888888 899999999999999
Q ss_pred HHHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300 168 CFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211 (211)
Q Consensus 168 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
+|.++++.+....... ...+...++.||+
T Consensus 158 ~f~~l~~~~~~~~~~~---------------~~~~~~~~~~c~~ 186 (187)
T cd04132 158 VFDTAIEEALKKEGKA---------------IFKKKKKKRKCVV 186 (187)
T ss_pred HHHHHHHHHHhhhhhh---------------hhccCCCCccccc
Confidence 9999999887655433 4556666677764
No 37
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=1.1e-33 Score=200.34 Aligned_cols=163 Identities=33% Similarity=0.625 Sum_probs=144.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|||||||++++++..+ ..+.++.+.++....+...+..+.+.+||++|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999988 677788888887778888888999999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccC----CCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTN----QDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~----~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
|++++.+++.+.. |...+...... .+.|+++|+||+|+.+...+..++...++...+++++++||+++.|++++|
T Consensus 81 D~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 81 DVTDRQSFEALDS-WLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999887 88777655332 579999999999997666677777777888888999999999999999999
Q ss_pred HHHHHHHHh
Q 028300 170 EQLALKIME 178 (211)
Q Consensus 170 ~~i~~~~~~ 178 (211)
++|++.+.+
T Consensus 160 ~~l~~~l~~ 168 (168)
T cd04119 160 QTLFSSIVD 168 (168)
T ss_pred HHHHHHHhC
Confidence 999988753
No 38
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=1.1e-33 Score=199.18 Aligned_cols=159 Identities=46% Similarity=0.814 Sum_probs=142.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|+|||||++++..+.+ ..+.++.+.++....+.+.+..+.+.+||++|+..+..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 5899999999999999999999988 556788888777777788888899999999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
|++++++++.+.. |+..+... ...+.|+++|+||.|+...+.+..++...+++.++.+|+++||++|.|++++|.+|.
T Consensus 81 d~~~~~sf~~~~~-~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 81 DISSERSYQHIMK-WVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999987 88877655 345799999999999988788888888899888899999999999999999999998
Q ss_pred HH
Q 028300 174 LK 175 (211)
Q Consensus 174 ~~ 175 (211)
+.
T Consensus 159 ~~ 160 (161)
T cd04117 159 EL 160 (161)
T ss_pred hh
Confidence 64
No 39
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=1.7e-33 Score=199.18 Aligned_cols=163 Identities=55% Similarity=0.887 Sum_probs=145.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
.+||+++|++|||||||++++.++.+ ..+.++.+.++....+...+..+.+.+||+||++.+...+..+++++|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999888 55667778777777778888889999999999999998899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
||+++++++.++.. |+..+... ...+.|+++|+||+|+.....+..++...++..++++++++||++|.|++++|.+|
T Consensus 82 ~d~~~~~s~~~l~~-~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 82 YDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred EECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence 99999999999998 88887655 34578999999999998777788888888888889999999999999999999999
Q ss_pred HHHHHh
Q 028300 173 ALKIME 178 (211)
Q Consensus 173 ~~~~~~ 178 (211)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T cd01869 160 AREIKK 165 (166)
T ss_pred HHHHHh
Confidence 987753
No 40
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1e-33 Score=199.73 Aligned_cols=161 Identities=40% Similarity=0.663 Sum_probs=137.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
++||+++|++|||||||++++..+.+ ..+.++.+ ......+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 47999999999999999999999887 45556655 33345567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
||++++++++++.. |...+.......++|+++|+||+|+.+.+.+..++...+...++.+++++||+++.|++++|+++
T Consensus 80 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04136 80 YSITSQSSFNDLQD-LREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADL 158 (163)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999988 76666554445689999999999997766777777777778888999999999999999999999
Q ss_pred HHHH
Q 028300 173 ALKI 176 (211)
Q Consensus 173 ~~~~ 176 (211)
.+.+
T Consensus 159 ~~~~ 162 (163)
T cd04136 159 VRQI 162 (163)
T ss_pred HHhc
Confidence 8754
No 41
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.7e-33 Score=198.38 Aligned_cols=160 Identities=46% Similarity=0.766 Sum_probs=148.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD 94 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (211)
||+++|+++||||||+++|.++.+ ..+.++.+.+.....+..++..+.+.+||++|++.+..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999998 6677888889999999999999999999999999999888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHH
Q 028300 95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLAL 174 (211)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~ 174 (211)
+++++|++.+.. |...+... ...++|+++|+||.|+.+.+.+..++++.++..++.+|+++|++++.|+.++|..+++
T Consensus 81 ~~~~~S~~~~~~-~~~~i~~~-~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~ 158 (162)
T PF00071_consen 81 VTDEESFENLKK-WLEEIQKY-KPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIR 158 (162)
T ss_dssp TTBHHHHHTHHH-HHHHHHHH-STTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred cccccccccccc-cccccccc-ccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999997 99998876 3357999999999999888889999999999999999999999999999999999999
Q ss_pred HHH
Q 028300 175 KIM 177 (211)
Q Consensus 175 ~~~ 177 (211)
.++
T Consensus 159 ~i~ 161 (162)
T PF00071_consen 159 KIL 161 (162)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 42
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=9.8e-33 Score=202.09 Aligned_cols=166 Identities=50% Similarity=0.814 Sum_probs=146.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
...+||+++|++|+|||||+++|....+ ..+.++.+.++....+.+.+..+.+.+||++|+..+..++..+++.+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 4569999999999999999999999888 556778888887777888888889999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
+|||++++.+++.+.. |...+... ....+|+++|+||+|+...+.+..++..+++..++++++++||+++.|++++|.
T Consensus 84 lv~D~~~~~s~~~l~~-~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~ 161 (210)
T PLN03108 84 LVYDITRRETFNHLAS-WLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFI 161 (210)
T ss_pred EEEECCcHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999887 77666544 345799999999999987777888888899999999999999999999999999
Q ss_pred HHHHHHHhc
Q 028300 171 QLALKIMEV 179 (211)
Q Consensus 171 ~i~~~~~~~ 179 (211)
++++.+.+.
T Consensus 162 ~l~~~~~~~ 170 (210)
T PLN03108 162 KTAAKIYKK 170 (210)
T ss_pred HHHHHHHHH
Confidence 999888764
No 43
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=2.5e-33 Score=197.97 Aligned_cols=162 Identities=38% Similarity=0.647 Sum_probs=138.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
++||+++|.+|||||||++++..+.+ ..+.++.+..+ ...+.+.+..+.+.+||+||++.+..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 47999999999999999999998887 45566666544 35567778889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
||+++..+++++.. |...+.......+.|+++|+||+|+.+...+...+...+++.++++|+++||+++.|++++|.++
T Consensus 80 ~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 80 YSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 99999999999988 66665544345789999999999998777777777777888888999999999999999999999
Q ss_pred HHHHH
Q 028300 173 ALKIM 177 (211)
Q Consensus 173 ~~~~~ 177 (211)
.+.+.
T Consensus 159 ~~~l~ 163 (164)
T cd04175 159 VRQIN 163 (164)
T ss_pred HHHhh
Confidence 87653
No 44
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=2.6e-33 Score=199.69 Aligned_cols=159 Identities=26% Similarity=0.523 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|.+|+|||||++++..+.| ..+.|+.+..+. ..+...+..+.+.+||++|++++..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 7999999999999999999999998 677788776554 34567788899999999999999988989999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcC-CeEEEeecc
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHG-SLFLECSAK 160 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa~ 160 (211)
|++++++++++...|...+... ..++|+++|+||+|+.+. +.+..+++.++++..+ +.|+++||+
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999986688887654 357999999999998543 4566777888888777 689999999
Q ss_pred CCCcHHHHHHHHHHHH
Q 028300 161 TRENVEQCFEQLALKI 176 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~ 176 (211)
+|.|++++|+.++...
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999988754
No 45
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=6.3e-33 Score=203.25 Aligned_cols=163 Identities=26% Similarity=0.550 Sum_probs=141.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+|+|.+|+|||||+++|..+.| ..+.|+.+..+. ..+.+++..+.+.|||++|++.|..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 7999999999999999999999988 567888876664 56677888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEEeecc
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLECSAK 160 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~ 160 (211)
|++++++|+++...|...+... ..+.|++||+||+|+.+. ..+..++...+++..++ +|+||||+
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~--~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEF--CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 9999999999977788877654 468999999999998542 13677888899999996 89999999
Q ss_pred CCC-cHHHHHHHHHHHHHhcc
Q 028300 161 TRE-NVEQCFEQLALKIMEVP 180 (211)
Q Consensus 161 ~~~-gv~~l~~~i~~~~~~~~ 180 (211)
++. ||+++|..+........
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRG 179 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhcc
Confidence 988 59999999998776643
No 46
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=5.1e-33 Score=204.60 Aligned_cols=164 Identities=32% Similarity=0.534 Sum_probs=143.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
...+||+++|.+|||||||+++++.+.+ ..+.++.+.++....+...+..+.+.+||++|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 8889999999999999999999999888 677889998888777777778899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
+|||++++++++.+.. |...+... ..++|+++|+||+|+.. ..+..++. .+....+++|+++||++|.|++++|.
T Consensus 91 lvfD~~~~~s~~~i~~-w~~~i~~~--~~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~ 165 (219)
T PLN03071 91 IMFDVTARLTYKNVPT-WHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFL 165 (219)
T ss_pred EEEeCCCHHHHHHHHH-HHHHHHHh--CCCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHH
Confidence 9999999999999987 88887754 45799999999999853 33444444 66677788999999999999999999
Q ss_pred HHHHHHHhcc
Q 028300 171 QLALKIMEVP 180 (211)
Q Consensus 171 ~i~~~~~~~~ 180 (211)
+|.+.+.+..
T Consensus 166 ~l~~~~~~~~ 175 (219)
T PLN03071 166 YLARKLAGDP 175 (219)
T ss_pred HHHHHHHcCc
Confidence 9999887653
No 47
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=6.9e-33 Score=195.89 Aligned_cols=162 Identities=49% Similarity=0.785 Sum_probs=144.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
..+||+++|++|||||||++++.+..+ ..+.++.+.++....+...+..+.+.+||+||+..+..++..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 357999999999999999999999988 5677888888888888888888899999999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 171 (211)
|||++++.++.++.. |+..+... ...++|+++|+||+|+...+.+..++...++...+++++++||+++.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 159 (165)
T cd01868 82 VYDITKKQTFENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQ 159 (165)
T ss_pred EEECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 999999999999987 88877655 3446999999999999877777777888888888899999999999999999999
Q ss_pred HHHHH
Q 028300 172 LALKI 176 (211)
Q Consensus 172 i~~~~ 176 (211)
|++.+
T Consensus 160 l~~~i 164 (165)
T cd01868 160 LLTEI 164 (165)
T ss_pred HHHHh
Confidence 98765
No 48
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=7.3e-34 Score=189.93 Aligned_cols=170 Identities=46% Similarity=0.782 Sum_probs=155.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEE-CCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTV-AGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
.+...+|++++|++-+|||+|++.+..+.| ....||.|.++..+.+.+ ++..+++++|||+|+++|++....+++++-
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 456789999999999999999999999999 667889999998887777 567899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 166 (211)
++++|||.++.+||+.+.. |..+...+.. +.++-+.+|++|+|+...++|..++++.++..++..|+|+|+++|.+|+
T Consensus 84 gvllvyditnr~sfehv~~-w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVEN-WVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred ceEEEEeccchhhHHHHHH-HHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 9999999999999999999 8888776655 5667778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 028300 167 QCFEQLALKIMEVP 180 (211)
Q Consensus 167 ~l~~~i~~~~~~~~ 180 (211)
+.|..|.+.+...-
T Consensus 163 EAF~mlaqeIf~~i 176 (213)
T KOG0091|consen 163 EAFDMLAQEIFQAI 176 (213)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988776553
No 49
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=5.1e-33 Score=199.14 Aligned_cols=165 Identities=27% Similarity=0.530 Sum_probs=140.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|..|+|||||+++|..+.| ..+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999988 568889998887777888888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC-----cccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE-----RVVSREEGIALAKEHGSLFLECSAKTRENVEQC 168 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~-----~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 168 (211)
|++++++++++.. |...+... .....| ++|+||+|+... .....++...++...+++++++||++|.|++++
T Consensus 81 D~t~~~s~~~i~~-~~~~~~~~-~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~l 157 (182)
T cd04128 81 DLTRKSTLNSIKE-WYRQARGF-NKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKI 157 (182)
T ss_pred ECcCHHHHHHHHH-HHHHHHHh-CCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999988 88877654 234567 678999998421 112235566777888899999999999999999
Q ss_pred HHHHHHHHHhccch
Q 028300 169 FEQLALKIMEVPSL 182 (211)
Q Consensus 169 ~~~i~~~~~~~~~~ 182 (211)
|+++.+.+.+.+..
T Consensus 158 f~~l~~~l~~~~~~ 171 (182)
T cd04128 158 FKIVLAKAFDLPLT 171 (182)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999988765443
No 50
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.4e-32 Score=194.85 Aligned_cols=165 Identities=52% Similarity=0.844 Sum_probs=145.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
+..+||+++|.+|+|||||++++.+..+ ..+.++.+.++....+...+....+.+||++|++++..+...+++.+|+++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il 81 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 81 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 3458999999999999999999999887 555677788887777888888889999999999999888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
+|||+++++++..+.. |+..+..+ ...++|+++|+||.|+.+...+..++...++...+++++++||+++.|++++|.
T Consensus 82 ~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~ 159 (168)
T cd01866 82 LVYDITRRETFNHLTS-WLEDARQH-SNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFI 159 (168)
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999988 88877655 346899999999999976667788888888888899999999999999999999
Q ss_pred HHHHHHHh
Q 028300 171 QLALKIME 178 (211)
Q Consensus 171 ~i~~~~~~ 178 (211)
++.+.+.+
T Consensus 160 ~~~~~~~~ 167 (168)
T cd01866 160 NTAKEIYE 167 (168)
T ss_pred HHHHHHHh
Confidence 99988754
No 51
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=9.8e-33 Score=199.14 Aligned_cols=160 Identities=33% Similarity=0.525 Sum_probs=135.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD 94 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (211)
||+++|++|||||||+++|..+.+ ..+.++.+..+. ..+..++..+.+.+||++|++.+..++..+++.+|++++|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 799999999999999999999988 456667665543 445667778999999999999999888899999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc------------ccCHHHHHHHHHHcC-CeEEEeeccC
Q 028300 95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER------------VVSREEGIALAKEHG-SLFLECSAKT 161 (211)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~------------~v~~~~~~~~~~~~~-~~~~~~Sa~~ 161 (211)
++++++|+.+...|...+... ..+.|+++|+||+|+.+.. .+..++...++...+ ++|+++||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999976688887754 3589999999999996543 245556667777766 6899999999
Q ss_pred CCcHHHHHHHHHHHHHh
Q 028300 162 RENVEQCFEQLALKIME 178 (211)
Q Consensus 162 ~~gv~~l~~~i~~~~~~ 178 (211)
|.|++++|.+|.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998873
No 52
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.1e-32 Score=195.51 Aligned_cols=163 Identities=34% Similarity=0.603 Sum_probs=140.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD 94 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (211)
||+++|.+|||||||++++..+.| ..+.++.+.++....+.+.+..+.+.+||+||++++..++..+++.+|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999999988 6778888888877778888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc--cCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300 95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV--VSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~--v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
+++++++..+.. |...+.........|+++|+||+|+.+... +..++...++..++.+|+++||+++.|++++|+.|
T Consensus 82 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 82 LTDVASLEHTRQ-WLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred CcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 999999999987 887764432345678999999999865433 23455667777788899999999999999999999
Q ss_pred HHHHHhc
Q 028300 173 ALKIMEV 179 (211)
Q Consensus 173 ~~~~~~~ 179 (211)
.+.+.+.
T Consensus 161 ~~~~~~~ 167 (170)
T cd04108 161 AALTFEL 167 (170)
T ss_pred HHHHHHc
Confidence 9887653
No 53
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=9e-33 Score=194.55 Aligned_cols=159 Identities=50% Similarity=0.801 Sum_probs=142.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|+|||||+++|.++.+ ..+.++.+.++....+.+++..+.+.+||+||+..+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988 666777787777777788888899999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
|++++.++..+.. |+..+... ...++|+++|+||.|+.....+..++...++...+++++++||+++.|++++|+++.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 81 DITNRTSFEALPT-WLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999988 77776544 356899999999999987777788888888888899999999999999999999998
Q ss_pred HH
Q 028300 174 LK 175 (211)
Q Consensus 174 ~~ 175 (211)
+.
T Consensus 159 ~~ 160 (161)
T cd04113 159 RS 160 (161)
T ss_pred Hh
Confidence 75
No 54
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.3e-32 Score=194.48 Aligned_cols=161 Identities=49% Similarity=0.815 Sum_probs=140.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
..+||+++|++|+|||||++++..+.+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999998887 4566777777777777788888899999999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCcHHHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRENVEQCFE 170 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~ 170 (211)
|||++++.+++.+.. |+..+... ...++|+++|+||+|+...+++...+...+++..+. .++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 82 AYDITRRSSFESVPH-WIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred EEECcCHHHHHhHHH-HHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 999999999999887 88877654 356899999999999987777777788888888775 689999999999999999
Q ss_pred HHHHH
Q 028300 171 QLALK 175 (211)
Q Consensus 171 ~i~~~ 175 (211)
++.+.
T Consensus 160 ~l~~~ 164 (165)
T cd01864 160 LMATE 164 (165)
T ss_pred HHHHh
Confidence 99865
No 55
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=9e-33 Score=195.11 Aligned_cols=162 Identities=41% Similarity=0.669 Sum_probs=137.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|||||||++++.+..+ ..+.++.. +........++..+.+.+||+||++++..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999999887 44445444 333455667778899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
|++++++++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++...+++|+++||+++.|++++|++|+
T Consensus 80 d~~~~~s~~~~~~-~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 80 SITDRQSFEEIKK-FREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence 9999999999988 666655443456899999999999977677777778888888889999999999999999999999
Q ss_pred HHHHh
Q 028300 174 LKIME 178 (211)
Q Consensus 174 ~~~~~ 178 (211)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T smart00173 159 REIRK 163 (164)
T ss_pred HHHhh
Confidence 87653
No 56
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=8.3e-33 Score=194.87 Aligned_cols=158 Identities=39% Similarity=0.627 Sum_probs=139.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC--CEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA--GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
+||+++|.+|+|||||++++..+.+ ..+.++.+.++....+.+. +..+.+.+||+||++++..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 5899999999999999999999888 5667788877766666666 678899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 171 (211)
|||++++++++.+.. |...+... ..++|+++|+||+|+.....+..++...++..++++++++|++++.|++++|++
T Consensus 81 v~d~~~~~s~~~l~~-~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (162)
T cd04106 81 VFSTTDRESFEAIES-WKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEY 157 (162)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 999999999999887 88777643 458999999999999877777878888888889999999999999999999999
Q ss_pred HHHH
Q 028300 172 LALK 175 (211)
Q Consensus 172 i~~~ 175 (211)
|.+.
T Consensus 158 l~~~ 161 (162)
T cd04106 158 LAEK 161 (162)
T ss_pred HHHh
Confidence 8754
No 57
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=9.5e-33 Score=194.82 Aligned_cols=161 Identities=37% Similarity=0.612 Sum_probs=136.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
++||+++|.+|+|||||++++..+.+ ..+.++.+ .+....+.+++....+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 47999999999999999999999988 44445544 44455667788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
||++++.++.++.. |...+.......++|+++|+||+|+.+...+...+...++...+++++++||+++.|++++|.++
T Consensus 80 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 80 YSLVNQQTFQDIKP-MRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 99999999999988 76666554344689999999999997666666666777777778899999999999999999999
Q ss_pred HHHH
Q 028300 173 ALKI 176 (211)
Q Consensus 173 ~~~~ 176 (211)
.+.+
T Consensus 159 ~~~l 162 (163)
T cd04176 159 VRQM 162 (163)
T ss_pred HHhc
Confidence 8754
No 58
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=3.6e-32 Score=191.90 Aligned_cols=162 Identities=60% Similarity=0.954 Sum_probs=143.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|+|||||++++.+..+ ....++.+.++....+...+..+.+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999998887 556677777777777788888889999999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
|++++.+++.+.. |+..+..+ ...++|+++|+||+|+.....+..+....+....+++++++|+.++.|++++|++|.
T Consensus 81 d~~~~~s~~~~~~-~l~~~~~~-~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 81 DITNRESFENLKN-WLKELREY-ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999988 88887665 236899999999999977667777778888888899999999999999999999999
Q ss_pred HHHHh
Q 028300 174 LKIME 178 (211)
Q Consensus 174 ~~~~~ 178 (211)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T smart00175 159 REILK 163 (164)
T ss_pred HHHhh
Confidence 98754
No 59
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=3e-32 Score=193.57 Aligned_cols=162 Identities=39% Similarity=0.688 Sum_probs=143.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc-cchhhhccCCcEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR-TLTSSYYRGAQGIIL 91 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d~~i~ 91 (211)
.+||+++|++|+|||||++++....+ ..+.++.+.++....+.+.+..+.+.+||++|++++. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 58999999999999999999999888 4567777777777778888888999999999998886 567888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC---CCcHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT---RENVEQC 168 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~---~~gv~~l 168 (211)
|||++++.++..+.. |+..+.......++|+++|+||+|+...+.+...+...++...+++|+++||++ +.+++++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 82 VYDVTNMASFHSLPS-WIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEECCCHHHHHhHHH-HHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence 999999999999988 888877664557899999999999987777888888888888889999999999 8999999
Q ss_pred HHHHHHHH
Q 028300 169 FEQLALKI 176 (211)
Q Consensus 169 ~~~i~~~~ 176 (211)
|.++++.+
T Consensus 161 f~~l~~~~ 168 (170)
T cd04115 161 FMTLAHKL 168 (170)
T ss_pred HHHHHHHh
Confidence 99998766
No 60
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=2.8e-32 Score=192.01 Aligned_cols=160 Identities=34% Similarity=0.617 Sum_probs=134.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
++||+++|++|||||||+++|.++.+ ..+.++.+..+ ...+.+++....+.+||++|++++..++..+++.+|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999999887 55666665444 44566777788899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
||+++..+++++.. |...+.......++|+++|+||+|+.. ..+...+...++...+++++++||+++.|++++|+++
T Consensus 80 ~~~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 80 FAINSRKSFEDIHT-YREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999887 666555443456899999999999865 4456667777777788999999999999999999999
Q ss_pred HHHH
Q 028300 173 ALKI 176 (211)
Q Consensus 173 ~~~~ 176 (211)
++.+
T Consensus 158 ~~~~ 161 (162)
T cd04138 158 VREI 161 (162)
T ss_pred HHHh
Confidence 8754
No 61
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.7e-33 Score=183.16 Aligned_cols=170 Identities=49% Similarity=0.789 Sum_probs=157.7
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA 86 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (211)
+.+++.-+|++++|+.|+|||.|++++....| +....+.|.++.++.+...+..+++++|||+|+++|++..+.+++.+
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 34677889999999999999999999999999 78889999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 166 (211)
-+.++|||+++.++|+.+.. |+.-.+.. ..+++-+++++||.|+.+.+++...++..|+.+..+.+.++|+++|++++
T Consensus 83 AGAlLVYD~TsrdsfnaLtn-WL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVE 160 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTN-WLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE 160 (214)
T ss_pred cceEEEEeccchhhHHHHHH-HHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHH
Confidence 99999999999999999999 99888866 67889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 028300 167 QCFEQLALKIMEV 179 (211)
Q Consensus 167 ~l~~~i~~~~~~~ 179 (211)
+.|-.....++..
T Consensus 161 EaFl~c~~tIl~k 173 (214)
T KOG0086|consen 161 EAFLKCARTILNK 173 (214)
T ss_pred HHHHHHHHHHHHH
Confidence 9997766665544
No 62
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=3.7e-32 Score=192.28 Aligned_cols=161 Identities=32% Similarity=0.585 Sum_probs=137.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|||||||+++++.+.+ ..+.++.+.++....+...+..+.+.+||++|++.+..++..++..+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999998887 567788888877777777788899999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
|+++++++..+.. |...+... ..++|+++|+||+|+.. ..+.. +...+....+.+++++||++|.|++++|++|.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~--~~~~piiiv~nK~Dl~~-~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 81 DVTSRVTYKNVPN-WHRDLVRV--CGNIPIVLCGNKVDIKD-RKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh--CCCCcEEEEEEchhccc-ccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence 9999999999987 88887765 23899999999999863 33333 33455666778999999999999999999999
Q ss_pred HHHHhcc
Q 028300 174 LKIMEVP 180 (211)
Q Consensus 174 ~~~~~~~ 180 (211)
+.+.+..
T Consensus 156 ~~~~~~~ 162 (166)
T cd00877 156 RKLLGNP 162 (166)
T ss_pred HHHHhcc
Confidence 9887644
No 63
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=3.6e-32 Score=193.63 Aligned_cols=158 Identities=30% Similarity=0.563 Sum_probs=135.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|.+|||||||+.++..+.+ ..+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 7999999999999999999999888 56677765433 445567888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEEeecc
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLECSAK 160 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~ 160 (211)
|++++++|.++...|...+... ..+.|+++|+||+|+.+. ..+..+++..++..++. +|+++||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999976688877654 357999999999998542 24677888888888884 89999999
Q ss_pred CCCcHHHHHHHHHHH
Q 028300 161 TRENVEQCFEQLALK 175 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~ 175 (211)
+|.|++++|+.+.+.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999998764
No 64
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=6e-32 Score=192.02 Aligned_cols=162 Identities=42% Similarity=0.687 Sum_probs=139.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
+..+||+++|++|+|||||++++..+.+ ..+.++.+.++....+.+++..+.+.+||+||++++..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 4679999999999999999999999888 456677787777777788889999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhcc---CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC-CeEEEeeccCCCcHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYST---NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG-SLFLECSAKTRENVE 166 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~ 166 (211)
+|||++++++++.+.. |...+..... ..++|+++|+||+|+. .+.+..++..+++..++ .+++++||+++.|++
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 83 LTFAVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEECCCHHHHHhHHH-HHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 9999999999999887 7766544322 3578999999999986 45667778888888877 489999999999999
Q ss_pred HHHHHHHHH
Q 028300 167 QCFEQLALK 175 (211)
Q Consensus 167 ~l~~~i~~~ 175 (211)
++|+++++.
T Consensus 161 ~~~~~~~~~ 169 (170)
T cd04116 161 AAFEEAVRR 169 (170)
T ss_pred HHHHHHHhh
Confidence 999999875
No 65
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=4.6e-32 Score=191.42 Aligned_cols=161 Identities=37% Similarity=0.615 Sum_probs=136.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
.+||+++|++|+|||||++++.+..+ ..+.++.+..+ .....+.+..+.+.+||+||+.++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 48999999999999999999998887 45555555333 34456777888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
||+++..+++.+.. |...+.......+.|+++|+||+|+.....+...+...++...+++++++||+++.|++++|++|
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 81 FSVTDRGSFEEVDK-FHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EECCCHHHHHHHHH-HHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 99999999999988 66665544345689999999999997766677777778888888999999999999999999999
Q ss_pred HHHH
Q 028300 173 ALKI 176 (211)
Q Consensus 173 ~~~~ 176 (211)
++.+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8764
No 66
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=8.3e-32 Score=189.61 Aligned_cols=159 Identities=35% Similarity=0.547 Sum_probs=134.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|.+|||||||++++..+.+ +...++.+.+........++..+.+.+||++|++.+..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999888 455556666666666677788899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
|++++.++.++.. |...+... ..++|+++|+||+|+... ...+...++...+++++++||+++.|++++|+.+.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~--~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (161)
T cd04124 81 DVTRKITYKNLSK-WYEELREY--RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI 154 (161)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh--CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999887 88777643 457899999999998432 12334556666788999999999999999999999
Q ss_pred HHHHhc
Q 028300 174 LKIMEV 179 (211)
Q Consensus 174 ~~~~~~ 179 (211)
+.+.++
T Consensus 155 ~~~~~~ 160 (161)
T cd04124 155 KLAVSY 160 (161)
T ss_pred HHHHhc
Confidence 887765
No 67
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.1e-31 Score=189.34 Aligned_cols=161 Identities=45% Similarity=0.755 Sum_probs=143.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
++||+++|++|+|||||++++.++.+. .+.++.+..+....+.+++..+.+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 479999999999999999999999984 4778888878777888888899999999999999988888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
+|+++++++..+.. |+..+... .....|+++++||+|+.....+...+...+....+++++++||++|.|++++|++|
T Consensus 81 ~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 81 YDITSEESFEKAKS-WVKELQRN-ASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred EECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999988 77777655 33689999999999987666677777888888888999999999999999999999
Q ss_pred HHHH
Q 028300 173 ALKI 176 (211)
Q Consensus 173 ~~~~ 176 (211)
++.+
T Consensus 159 ~~~l 162 (163)
T cd01860 159 AKKL 162 (163)
T ss_pred HHHh
Confidence 9875
No 68
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-34 Score=191.56 Aligned_cols=172 Identities=38% Similarity=0.665 Sum_probs=157.1
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC---------CEEEEEEEEeCCChhhhccc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA---------GKRLKLTIWDTAGQERFRTL 78 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~D~~g~~~~~~~ 78 (211)
..++.-++.+.+|++|+|||+|+.++..+.| .....+.|.++..+.+.+. +..+.+++|||+|+++|+++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 4456778899999999999999999999999 7788888888877766552 23578999999999999999
Q ss_pred hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEee
Q 028300 79 TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECS 158 (211)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 158 (211)
..++++.+.+++++||+++.+||.+++. |+..++.+....++.+++++||+|+++.+.|+.+++..++.++++|||++|
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrn-WlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETS 162 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRN-WLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETS 162 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHH-HHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeec
Confidence 9999999999999999999999999999 999999988899999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHHHHHHHhccc
Q 028300 159 AKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 159 a~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
|-++.+|++..+.++..++++..
T Consensus 163 A~tg~Nv~kave~LldlvM~Rie 185 (219)
T KOG0081|consen 163 ACTGTNVEKAVELLLDLVMKRIE 185 (219)
T ss_pred cccCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887654
No 69
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=8e-32 Score=190.47 Aligned_cols=158 Identities=32% Similarity=0.493 Sum_probs=133.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|||||||++++.++.+ ..+.++.+..+ ...+......+.+.+||++|++++..++...++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999988 45556655444 344556677889999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhcc--CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYST--NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 171 (211)
|+++.++++++.. |...+..... ..++|+++|+||+|+.+.+.+...+...++..++++|+++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 81 SVTSKQSLEELKP-IYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence 9999999999988 6666554322 267999999999999776677777777788888889999999999999999999
Q ss_pred HHH
Q 028300 172 LAL 174 (211)
Q Consensus 172 i~~ 174 (211)
|++
T Consensus 160 l~~ 162 (165)
T cd04140 160 LLN 162 (165)
T ss_pred HHh
Confidence 875
No 70
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=9.7e-32 Score=191.62 Aligned_cols=159 Identities=33% Similarity=0.613 Sum_probs=135.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300 17 ILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV 95 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (211)
|+|+|++|||||||++++..+.+ ..+.++....+ ...+.+++..+.+.+||+||++.+..++..+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 68999999999999999999988 44555555444 34566778889999999999999998899999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEEeeccCC
Q 028300 96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLECSAKTR 162 (211)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (211)
+++++++++...|...+... ..++|+++|+||+|+... ..+..++...++...+. +|+++||+++
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 157 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQ 157 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCC
Confidence 99999999976688887765 358999999999998643 23667777888888886 8999999999
Q ss_pred CcHHHHHHHHHHHHHh
Q 028300 163 ENVEQCFEQLALKIME 178 (211)
Q Consensus 163 ~gv~~l~~~i~~~~~~ 178 (211)
.|++++|+.+++.+..
T Consensus 158 ~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 158 EGVREVFEEAIRAALN 173 (174)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 9999999999987753
No 71
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=2.2e-31 Score=187.44 Aligned_cols=159 Identities=69% Similarity=1.085 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|+|||||+++|.+..+ ....++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999888 457788888887777777888899999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
|++++++++.+.. |...+..+....+.|+++|+||+|+. ......++...+....+++++++|+++|.|+++++++++
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 81 DVTRRDTFTNLET-WLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred ECCCHHHHHhHHH-HHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999999999888 88888776566789999999999986 334566677788888899999999999999999999988
Q ss_pred HH
Q 028300 174 LK 175 (211)
Q Consensus 174 ~~ 175 (211)
+.
T Consensus 159 ~~ 160 (161)
T cd01863 159 EK 160 (161)
T ss_pred Hh
Confidence 75
No 72
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=2.6e-31 Score=187.06 Aligned_cols=159 Identities=40% Similarity=0.701 Sum_probs=138.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|||||||++++.+..+ ..+.++.+.++....+..++..+.+.+||+||+..+..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 4899999999999999999999888 556777777777777777887889999999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
|+++++++..+.. |...+... ...+.|+++++||+|+.+...+..++...+....+++++++|++++.|++++|++|.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 81 DITNRQSFDNTDK-WIDDVRDE-RGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred ECcCHHHHHHHHH-HHHHHHHh-CCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999887 77766543 234799999999999966666777777888888889999999999999999999998
Q ss_pred HH
Q 028300 174 LK 175 (211)
Q Consensus 174 ~~ 175 (211)
+.
T Consensus 159 ~~ 160 (161)
T cd01861 159 SA 160 (161)
T ss_pred Hh
Confidence 75
No 73
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=2e-31 Score=193.09 Aligned_cols=167 Identities=22% Similarity=0.359 Sum_probs=133.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc--------chhhhccC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT--------LTSSYYRG 85 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~ 85 (211)
+||+|+|.+|||||||++++.++.+ ..+.|+.+.+.....+.+++..+.+.+||+||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999988 45667776666556667788889999999999654321 13345789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhc--cCCCccEEEEeecCCCCCCcccCHHHHHHHHH-HcCCeEEEeeccCC
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYS--TNQDCVKMLVGNKVDRDSERVVSREEGIALAK-EHGSLFLECSAKTR 162 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~ 162 (211)
+|++|+|||++++++++.+.. |...+.... ...++|+++|+||+|+...+.+..++...++. .++++|+++||++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~-~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKL-LRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 999999999999999999988 666554432 24679999999999997666666666665544 56889999999999
Q ss_pred CcHHHHHHHHHHHHHhccch
Q 028300 163 ENVEQCFEQLALKIMEVPSL 182 (211)
Q Consensus 163 ~gv~~l~~~i~~~~~~~~~~ 182 (211)
.|++++|+.+++.+..+-+.
T Consensus 160 ~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 160 WHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCHHHHHHHHHHHhhccCCC
Confidence 99999999999988866544
No 74
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=3.2e-31 Score=187.95 Aligned_cols=162 Identities=36% Similarity=0.645 Sum_probs=138.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
++||+++|.+|||||||++++..+.+ ..+.++.+..+ ...+...+..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 47999999999999999999999888 55566665443 45566777889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC-CeEEEeeccCCCcHHHHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG-SLFLECSAKTRENVEQCFEQ 171 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~ 171 (211)
||++++++++.... |...+.......+.|+++++||.|+.+.+.+..++...+++.++ ++++++||+++.|++++|.+
T Consensus 80 ~~~~~~~s~~~~~~-~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~ 158 (168)
T cd04177 80 YSVTSEASLNELGE-LREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFID 158 (168)
T ss_pred EECCCHHHHHHHHH-HHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHH
Confidence 99999999999988 77766554345689999999999997777777777777777777 79999999999999999999
Q ss_pred HHHHHH
Q 028300 172 LALKIM 177 (211)
Q Consensus 172 i~~~~~ 177 (211)
+...+.
T Consensus 159 i~~~~~ 164 (168)
T cd04177 159 LVRQII 164 (168)
T ss_pred HHHHHh
Confidence 988664
No 75
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=2.8e-31 Score=191.75 Aligned_cols=158 Identities=25% Similarity=0.406 Sum_probs=127.9
Q ss_pred eeEEEEEcCCCCcHHHHHH-HHhhCCC------CCCCCccce-eeEEEE--------EEECCEEEEEEEEeCCChhhhcc
Q 028300 14 SFKILLIGDSGVGKSSLLV-SFISSSV------DDLSPTIGV-DFKIKL--------LTVAGKRLKLTIWDTAGQERFRT 77 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~-~l~~~~~------~~~~~~~~~-~~~~~~--------~~~~~~~~~~~l~D~~g~~~~~~ 77 (211)
.+||+++|..|||||||+. ++.+..+ ..+.||.+. +..... ..+++..+.+.+|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 5554433 345566642 222211 24577889999999999875 2
Q ss_pred chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC-------------------Cccc
Q 028300 78 LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS-------------------ERVV 138 (211)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~-------------------~~~v 138 (211)
+...+++++|++|+|||+++++||+++...|...+... ..+.|+++|+||+|+.+ .+.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 45568899999999999999999999986688887655 35789999999999864 3678
Q ss_pred CHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHH
Q 028300 139 SREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALK 175 (211)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 175 (211)
..++++.+++.++++|++|||++|.||+++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8899999999999999999999999999999998864
No 76
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=3e-31 Score=191.94 Aligned_cols=155 Identities=30% Similarity=0.544 Sum_probs=136.6
Q ss_pred EcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCCh
Q 028300 20 IGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR 98 (211)
Q Consensus 20 ~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 98 (211)
+|.+|||||||+++++.+.+ ..+.++.+.++....+.+++..+.+.|||++|++.|..++..+++++|++|+|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999998888 56788989888888888888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300 99 ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 99 ~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
.++..+.. |+..+... ..++|+++|+||+|+.. +.+..+. ..++...++.|++|||++|.||+++|.+|.+.+..
T Consensus 81 ~S~~~i~~-w~~~i~~~--~~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 81 VTYKNVPN-WHRDLVRV--CENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred HHHHHHHH-HHHHHHHh--CCCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999987 99988765 35899999999999854 3344443 35667788999999999999999999999998876
Q ss_pred c
Q 028300 179 V 179 (211)
Q Consensus 179 ~ 179 (211)
.
T Consensus 156 ~ 156 (200)
T smart00176 156 D 156 (200)
T ss_pred c
Confidence 5
No 77
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-32 Score=177.82 Aligned_cols=173 Identities=43% Similarity=0.763 Sum_probs=158.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
+..-+||+++|..|+|||.|++++..+-| +....+.|.++..+++.+.++++++++|||+|+++|++....+++.++++
T Consensus 4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal 83 (213)
T KOG0095|consen 4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL 83 (213)
T ss_pred cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence 45678999999999999999999999999 56778999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
|+|||++-..+|.-+.+ |+.++..+ ...++-.++|+||+|+.+.++++....++|+.....-|.++||+...+++.+|
T Consensus 84 ilvydiscqpsfdclpe-wlreie~y-an~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 84 ILVYDISCQPSFDCLPE-WLREIEQY-ANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred EEEEecccCcchhhhHH-HHHHHHHH-hhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 99999999999999999 99999988 56678889999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHHhccchhcc
Q 028300 170 EQLALKIMEVPSLLEE 185 (211)
Q Consensus 170 ~~i~~~~~~~~~~~~~ 185 (211)
..+..++....+....
T Consensus 162 ~~~a~rli~~ar~~d~ 177 (213)
T KOG0095|consen 162 LDLACRLISEARQNDL 177 (213)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999888877655444
No 78
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=6.3e-31 Score=185.11 Aligned_cols=160 Identities=39% Similarity=0.709 Sum_probs=137.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|+|||||++++.+..+ ....++.........+...+....+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999887 444455555665666666777889999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
|+++.++++.+.. |...+... ...++|+++|+||+|+.....+..++...+....+.+++++|++++.|++++|+++.
T Consensus 81 d~~~~~s~~~~~~-~~~~i~~~-~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 81 DITDADSFQKVKK-WIKELKQM-RGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999888 77777655 234899999999999987777777777788888899999999999999999999998
Q ss_pred HHH
Q 028300 174 LKI 176 (211)
Q Consensus 174 ~~~ 176 (211)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04123 159 KRM 161 (162)
T ss_pred HHh
Confidence 765
No 79
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=8.1e-31 Score=186.43 Aligned_cols=165 Identities=40% Similarity=0.691 Sum_probs=139.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|+|||||++++.+..+ ....++.+.++....+...+..+.+.+||+||+..+..++..+++++|++|++|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999887 455567777777777778888899999999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhcc---CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC-CeEEEeeccCCCcHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYST---NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG-SLFLECSAKTRENVEQCF 169 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~ 169 (211)
|++++.+++++.. |...+..... ..++|+++|+||+|+..++.+..++...+....+ .+++++|++++.|++++|
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 81 DVTNPKSFESLDS-WRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF 159 (172)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence 9999999988876 6665433212 3479999999999997656666677777777776 789999999999999999
Q ss_pred HHHHHHHHhcc
Q 028300 170 EQLALKIMEVP 180 (211)
Q Consensus 170 ~~i~~~~~~~~ 180 (211)
++|.+.+.+..
T Consensus 160 ~~i~~~~~~~~ 170 (172)
T cd01862 160 ETIARKALEQE 170 (172)
T ss_pred HHHHHHHHhcc
Confidence 99999887653
No 80
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=4.2e-31 Score=194.65 Aligned_cols=165 Identities=28% Similarity=0.374 Sum_probs=137.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhcc-CCcEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYR-GAQGIIL 91 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-~~d~~i~ 91 (211)
+||+++|++|+|||||+++|..+.+ ..+.++.+.++....+.+++....+.+||++|++.+ ....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEE
Confidence 5899999999999999999988877 345555554666677788888899999999998722 2344566 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 171 (211)
|||++++.+++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++|+++||+++.|++++|++
T Consensus 79 V~d~td~~S~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 79 VYSVTDRSSFERASE-LRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 999999999999988 7777765534468999999999999877778877778888888899999999999999999999
Q ss_pred HHHHHHhccch
Q 028300 172 LALKIMEVPSL 182 (211)
Q Consensus 172 i~~~~~~~~~~ 182 (211)
+++.+......
T Consensus 158 l~~~~~~~~~~ 168 (221)
T cd04148 158 IVRQIRLRRDS 168 (221)
T ss_pred HHHHHHhhhcc
Confidence 99988754433
No 81
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=5.4e-31 Score=186.01 Aligned_cols=159 Identities=31% Similarity=0.510 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC--CC-CCCCCccceeeEEEEEEEC-CEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS--SV-DDLSPTIGVDFKIKLLTVA-GKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~--~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
+||+++|++|||||||++++... .+ ..+.++.+.++....+... +..+.+.+||+||+..+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 45 6677788877766666664 56789999999999999888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
+|||++++++++++.. |+..+... ..++|+++|+||+|+.+...+...+...+...++.+++++||+++.|++++|+
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 157 (164)
T cd04101 81 LVYDVSNKASFENCSR-WVNKVRTA--SKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFE 157 (164)
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHH
Confidence 9999999999998877 88777655 25799999999999977766776666667777788999999999999999999
Q ss_pred HHHHHH
Q 028300 171 QLALKI 176 (211)
Q Consensus 171 ~i~~~~ 176 (211)
++.+.+
T Consensus 158 ~l~~~~ 163 (164)
T cd04101 158 SLARAF 163 (164)
T ss_pred HHHHHh
Confidence 998865
No 82
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=7e-31 Score=187.04 Aligned_cols=157 Identities=34% Similarity=0.584 Sum_probs=133.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|+|||||++++..+.+ ..+.++. .+.....+.+++..+.+.+||+||+..+..++..+++++|++++||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 5899999999999999999998888 4455544 4444556777788899999999999999998999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC------------CcccCHHHHHHHHHHcCC-eEEEeecc
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS------------ERVVSREEGIALAKEHGS-LFLECSAK 160 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~~~Sa~ 160 (211)
|++++.+++.+...|...+... ..+.|+++|+||+|+.. .+.+..+++..+++..+. +|+++||+
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~ 157 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSAL 157 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCC
Confidence 9999999999876588777643 35799999999999853 346677788888888887 89999999
Q ss_pred CCCcHHHHHHHHHH
Q 028300 161 TRENVEQCFEQLAL 174 (211)
Q Consensus 161 ~~~gv~~l~~~i~~ 174 (211)
++.|++++|+.++-
T Consensus 158 ~~~~v~~lf~~~~~ 171 (173)
T cd04130 158 TQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999998764
No 83
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=5.7e-31 Score=184.47 Aligned_cols=154 Identities=23% Similarity=0.360 Sum_probs=126.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD 94 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (211)
+||+++|++|+|||||+.++..+.|....++.+..+ ...+.+++..+.+.+||++|++. ..+++.+|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 589999999999999999999888844333333333 35677788888999999999864 245678999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC--CCcccCHHHHHHHHHHc-CCeEEEeeccCCCcHHHHHHH
Q 028300 95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD--SERVVSREEGIALAKEH-GSLFLECSAKTRENVEQCFEQ 171 (211)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~~ 171 (211)
++++++|+++.. |...+.......++|+++|+||.|+. ..+.+..++..++++.. +++|++|||+++.||+++|.+
T Consensus 75 ~~~~~sf~~~~~-~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~ 153 (158)
T cd04103 75 LENEASFQTVYN-LYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE 153 (158)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence 999999999987 77777655334678999999999984 35677888888888776 589999999999999999999
Q ss_pred HHHH
Q 028300 172 LALK 175 (211)
Q Consensus 172 i~~~ 175 (211)
+.+.
T Consensus 154 ~~~~ 157 (158)
T cd04103 154 AAQK 157 (158)
T ss_pred HHhh
Confidence 8764
No 84
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=8.6e-31 Score=186.72 Aligned_cols=159 Identities=31% Similarity=0.594 Sum_probs=134.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|+|||||++++..+.+ ..+.++....+ ...+.+++..+.+.+||++|+..+...+...++.+|++++||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 5899999999999999999999988 45555554333 345677888889999999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEEeecc
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLECSAK 160 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~ 160 (211)
|++++.+++.+...|...+... ..+.|+++|+||+|+.+. ..+..+++..+++..+. +|+++||+
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 157 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL 157 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence 9999999999987688887654 568999999999998543 24666777888888885 79999999
Q ss_pred CCCcHHHHHHHHHHHH
Q 028300 161 TRENVEQCFEQLALKI 176 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~ 176 (211)
+|.|++++|+.+++.+
T Consensus 158 ~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 158 TQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999998865
No 85
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.98 E-value=1.8e-30 Score=183.24 Aligned_cols=161 Identities=35% Similarity=0.611 Sum_probs=134.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|||||||++++....+ ..+.++.+.. .......++..+.+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 5899999999999999999999887 4444444433 3345567788899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
|++++.++.++.. |...+.......++|+++|+||+|+.........+...+...++++++++||+++.|++++|+++.
T Consensus 80 d~~~~~s~~~~~~-~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 80 SITDMESFTATAE-FREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999988 544444332456899999999999976555666677777788889999999999999999999999
Q ss_pred HHHH
Q 028300 174 LKIM 177 (211)
Q Consensus 174 ~~~~ 177 (211)
+.+.
T Consensus 159 ~~~~ 162 (164)
T cd04139 159 REIR 162 (164)
T ss_pred HHHH
Confidence 8775
No 86
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.98 E-value=9.6e-31 Score=195.10 Aligned_cols=161 Identities=28% Similarity=0.474 Sum_probs=134.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|.+|||||||+++|+.+.+ ..+.++.+ ++....+.+.+..+.+.|||++|+..|..++..++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999988 45666665 445566778888899999999999988888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhc--------cCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-cCCeEEEeeccCCCc
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYS--------TNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-HGSLFLECSAKTREN 164 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~g 164 (211)
|+++.++|+++.. |...+.... ...++|+++|+||+|+...+.+..+++.+++.. .++.|+++||+++.|
T Consensus 80 dv~~~~Sf~~i~~-~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~g 158 (247)
T cd04143 80 SLDNRESFEEVCR-LREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSN 158 (247)
T ss_pred eCCCHHHHHHHHH-HHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence 9999999999987 666554321 235799999999999976667777777776653 467899999999999
Q ss_pred HHHHHHHHHHHHH
Q 028300 165 VEQCFEQLALKIM 177 (211)
Q Consensus 165 v~~l~~~i~~~~~ 177 (211)
++++|++|.+.+.
T Consensus 159 I~elf~~L~~~~~ 171 (247)
T cd04143 159 LDEMFRALFSLAK 171 (247)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998653
No 87
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.98 E-value=7.2e-31 Score=185.58 Aligned_cols=160 Identities=35% Similarity=0.547 Sum_probs=133.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh-hccchhhhccCCcEEEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER-FRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~~i~v~ 93 (211)
||+++|++|+|||||+++++...+ ..+.++....+ ...+.+++..+.+.+||+||+.. +......+++.+|++++||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999998877 45555554333 44567788888999999999885 3445677889999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCC-CcHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTR-ENVEQCFEQ 171 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~-~gv~~l~~~ 171 (211)
|++++.+++.+.. |...+..... ..++|+++|+||+|+...+.+..++...++...+.+|+++||+++ .|++++|.+
T Consensus 80 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 80 SITDRSSFDEISQ-LKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred ECCCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence 9999999999988 7777765532 457999999999999777777888888888888999999999999 599999999
Q ss_pred HHHHHH
Q 028300 172 LALKIM 177 (211)
Q Consensus 172 i~~~~~ 177 (211)
+.+.+.
T Consensus 159 l~~~~~ 164 (165)
T cd04146 159 LCREVR 164 (165)
T ss_pred HHHHHh
Confidence 988664
No 88
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=1.3e-30 Score=184.82 Aligned_cols=162 Identities=22% Similarity=0.289 Sum_probs=135.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVD--DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
++.+||+++|.+|+|||||+++|.++.+. .+.++.+..+....+.+.+..+.+.+||++|+..+..++..+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 57899999999999999999999999884 6778888777766677778888999999999999888888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCcHHHH
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRENVEQC 168 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l 168 (211)
++|||++++.+++.+.. |...+.. ..++|+++|+||+|+.+...+...+...+.+.+++ .++++||+++.|++++
T Consensus 82 llv~d~~~~~s~~~~~~-~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (169)
T cd01892 82 CLVYDSSDPKSFSYCAE-VYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNEL 157 (169)
T ss_pred EEEEeCCCHHHHHHHHH-HHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHH
Confidence 99999999999998877 6665432 24799999999999965544433445566677776 4799999999999999
Q ss_pred HHHHHHHHH
Q 028300 169 FEQLALKIM 177 (211)
Q Consensus 169 ~~~i~~~~~ 177 (211)
|+.+.+.+.
T Consensus 158 f~~l~~~~~ 166 (169)
T cd01892 158 FTKLATAAQ 166 (169)
T ss_pred HHHHHHHhh
Confidence 999998765
No 89
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.98 E-value=3e-30 Score=180.77 Aligned_cols=157 Identities=59% Similarity=0.953 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|||||||++++.+..+. .+.++.+.++....+...+....+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999884 45788888888888888888899999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
|++++++++.+.. |+..+... ...+.|+++++||+|+........++.+.+....+.+++++|++++.|++++|++|.
T Consensus 81 d~~~~~~~~~~~~-~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDK-WLKELKEY-APENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 9999999999888 88777655 236799999999999975566677888888888889999999999999999999986
No 90
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=7.1e-30 Score=181.13 Aligned_cols=163 Identities=45% Similarity=0.799 Sum_probs=139.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
...++|+++|++|+|||||++++..+.+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4569999999999999999999998777 455677777777777788888889999999999999888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
+|||+++..+++.+.. |...+... ...+.|+++|+||+|+.+.+++.......+......+++++||++|.|++++|+
T Consensus 85 ~v~d~~~~~s~~~~~~-~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 162 (169)
T cd04114 85 LTYDITCEESFRCLPE-WLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFL 162 (169)
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHH
Confidence 9999999999998887 88777654 345799999999999977777776666677776778899999999999999999
Q ss_pred HHHHHH
Q 028300 171 QLALKI 176 (211)
Q Consensus 171 ~i~~~~ 176 (211)
+|.+.+
T Consensus 163 ~i~~~~ 168 (169)
T cd04114 163 DLACRL 168 (169)
T ss_pred HHHHHh
Confidence 998764
No 91
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=1.1e-32 Score=178.47 Aligned_cols=187 Identities=37% Similarity=0.660 Sum_probs=163.4
Q ss_pred EEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECC
Q 028300 19 LIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVT 96 (211)
Q Consensus 19 v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 96 (211)
++|.+++|||.|+-++..+.| ....++.|.++....+..++.++++++||+.|+++|++....+++.+|+++++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999999998888 667788999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300 97 RRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 97 ~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
+..||++.+. |+..+.++ ....+.+++++||+|+.+++.+..++.+.+++.+++||.++||++|.+++..|-.|.+.+
T Consensus 82 nkasfdn~~~-wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 82 NKASFDNCQA-WLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred cchhHHHHHH-HHHHHHHH-HHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence 9999999999 99999988 567888999999999999999999999999999999999999999999999999999999
Q ss_pred HhccchhcccccccccccccCCCCCCCCCCCCCC
Q 028300 177 MEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCC 210 (211)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (211)
.+..-..+...... ....-.....+.+--||
T Consensus 160 ~k~~~~~~~~~~~~---~~~~v~~~~k~eia~cc 190 (192)
T KOG0083|consen 160 KKLKMGAPPEGEFA---DHDSVADEGKGEIARCC 190 (192)
T ss_pred HHhccCCCCCCccc---cchhHHhcCCCcccccc
Confidence 88765554443222 11222334455666777
No 92
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=9.6e-31 Score=185.30 Aligned_cols=156 Identities=22% Similarity=0.362 Sum_probs=124.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
...+||+++|++|||||||++++..+.+..+.++.+.++... . ...+.+.+||++|++.+..++..+++++|++|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~--~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETV--T--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEE--E--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 457899999999999999999999888866777777665422 2 256889999999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-----cCCeEEEeeccCCCcHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-----HGSLFLECSAKTRENVE 166 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~gv~ 166 (211)
|||++++.+++++...|...+... ...++|+++|+||+|+.+. +..+++..+... ..++++++||++|.|++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDR-EMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCH-hhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 999999999999888555555432 2357899999999998542 344555544321 23468999999999999
Q ss_pred HHHHHHHH
Q 028300 167 QCFEQLAL 174 (211)
Q Consensus 167 ~l~~~i~~ 174 (211)
++|+||.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999864
No 93
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=1.1e-30 Score=187.48 Aligned_cols=168 Identities=24% Similarity=0.347 Sum_probs=131.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEE-CCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTV-AGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
..+||+++|++|||||||++++....+....++.+.+.....+.. ++..+.+.+||++|++.+..++..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 468999999999999999999998888666777776666555544 3356889999999999998899999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH--H----cCCeEEEeeccCCCcH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK--E----HGSLFLECSAKTRENV 165 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~--~----~~~~~~~~Sa~~~~gv 165 (211)
|||+++.+++..+.. |+..+.......++|+++|+||+|+.+. +..++...+.. . .+++++++||+++.|+
T Consensus 82 v~D~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 82 VVDSVDVERMEEAKT-ELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEECCCHHHHHHHHH-HHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 999999998888877 5555544434568999999999998542 33333333322 1 1246899999999999
Q ss_pred HHHHHHHHHHHHhccchh
Q 028300 166 EQCFEQLALKIMEVPSLL 183 (211)
Q Consensus 166 ~~l~~~i~~~~~~~~~~~ 183 (211)
+++|++|.+.+.+.+.-.
T Consensus 159 ~~l~~~l~~~l~~~~~~~ 176 (183)
T cd04152 159 QEGLEKLYEMILKRRKML 176 (183)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999887655433
No 94
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=6.1e-30 Score=185.89 Aligned_cols=167 Identities=26% Similarity=0.407 Sum_probs=133.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC-CCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDD-LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD 94 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (211)
||+++|.+|+|||||+++++...+.. +.++.. ......+.+.+..+.+.+||+||+..+..++..++..+|++++|||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 68999999999999999999988843 445543 3444566777777899999999999998888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC-CcccCHHHHHHHHH-HcCCeEEEeeccCCCcHHHHHHHH
Q 028300 95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS-ERVVSREEGIALAK-EHGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~-~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
++++.+++.+.. |...+.......++|+++|+||+|+.. ...+......+... .++.+++++||++|.|++++|++|
T Consensus 80 ~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 158 (198)
T cd04147 80 VDDPESFEEVER-LREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKEL 158 (198)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHH
Confidence 999999999987 666665554456899999999999865 34455544444433 456789999999999999999999
Q ss_pred HHHHHhccchhc
Q 028300 173 ALKIMEVPSLLE 184 (211)
Q Consensus 173 ~~~~~~~~~~~~ 184 (211)
.+.+.......+
T Consensus 159 ~~~~~~~~~~~~ 170 (198)
T cd04147 159 LRQANLPYNLSP 170 (198)
T ss_pred HHHhhcccccch
Confidence 998875544444
No 95
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=3.8e-31 Score=188.61 Aligned_cols=159 Identities=22% Similarity=0.365 Sum_probs=124.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
..++||+++|++|||||||++++..+.+..+.|+.+...... .. ..+.+.+||+||+..+..++..+++++|++|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~--~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETV--TY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEE--EE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 457999999999999999999998887866777777665432 22 45789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVE 166 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~ 166 (211)
|||+++++++++....|...+... ...++|++||+||+|+.+.. ..++...... ...+.++++||++|.|++
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNED-ELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCH-hhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 999999999999888555554432 23578999999999985432 2233322221 123357789999999999
Q ss_pred HHHHHHHHHHH
Q 028300 167 QCFEQLALKIM 177 (211)
Q Consensus 167 ~l~~~i~~~~~ 177 (211)
++|+||.+.+.
T Consensus 164 e~~~~l~~~~~ 174 (175)
T smart00177 164 EGLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHHhc
Confidence 99999987653
No 96
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.8e-30 Score=185.90 Aligned_cols=160 Identities=23% Similarity=0.377 Sum_probs=125.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
.+++||+++|.++||||||++++..+.+..+.|+.+.+... + +...+.+.+||+||++.++.++..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~--~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEE--E--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 56789999999999999999999988886677777766542 2 2346789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-----CCeEEEeeccCCCcHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-----GSLFLECSAKTRENVE 166 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~ 166 (211)
|||+++++++.++...+...+... ...++|++||+||+|+.... ..++........ .+.++++||++|.|++
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~-~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~ 167 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNED-ELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 167 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCH-hhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence 999999999998887454444322 23579999999999986543 333333322111 1246789999999999
Q ss_pred HHHHHHHHHHHh
Q 028300 167 QCFEQLALKIME 178 (211)
Q Consensus 167 ~l~~~i~~~~~~ 178 (211)
++|+||.+.+.+
T Consensus 168 e~~~~l~~~~~~ 179 (181)
T PLN00223 168 EGLDWLSNNIAN 179 (181)
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
No 97
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=2e-30 Score=183.94 Aligned_cols=159 Identities=25% Similarity=0.423 Sum_probs=126.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV 95 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (211)
||+++|.+|||||||++++.+..+..+.+|.+..... ++...+.+.+||+||+..+...+..+++.+|++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~----~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVET----VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEE----EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 6899999999999999999998886677777655542 223467899999999999988899999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc------CCeEEEeeccCCCcHHHHH
Q 028300 96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH------GSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~ 169 (211)
++++++.++...+...+... ...+.|++||+||+|+.+ .+..++..++.... .+.++++||++|.|++++|
T Consensus 77 s~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTEK-ELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CcHHHHHHHHHHHHHHhcCh-hhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 99999999988444444332 335689999999999854 34555555554322 1368899999999999999
Q ss_pred HHHHHHHHhccc
Q 028300 170 EQLALKIMEVPS 181 (211)
Q Consensus 170 ~~i~~~~~~~~~ 181 (211)
+||.+.+.+...
T Consensus 154 ~~l~~~~~~~~~ 165 (169)
T cd04158 154 DWLSRQLVAAGV 165 (169)
T ss_pred HHHHHHHhhccc
Confidence 999988877654
No 98
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=1.5e-29 Score=180.41 Aligned_cols=159 Identities=31% Similarity=0.592 Sum_probs=131.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
.||+++|++|||||||++++....+ ..+.++.+..+. ..+.+++..+.+.+||++|++.+...+...+.++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999888 456666665443 35567778889999999999999888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEEeecc
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLECSAK 160 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~ 160 (211)
|+++.++++.+...|...+... ..++|+++|+||+|+.+. ..+...+..+++...+. +++++||+
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999976688877654 458899999999998543 22445666777776664 79999999
Q ss_pred CCCcHHHHHHHHHHHH
Q 028300 161 TRENVEQCFEQLALKI 176 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~ 176 (211)
+|.|++++|++|.+.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998754
No 99
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=1.3e-29 Score=178.01 Aligned_cols=158 Identities=40% Similarity=0.666 Sum_probs=133.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD 94 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (211)
||+++|++|||||||++++.+..+ ..+.++.. +.....+...+..+.+.+||+||+..+...+..+++.+|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998877 44555545 5555566677778899999999999988888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHH
Q 028300 95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLAL 174 (211)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~ 174 (211)
+++++++.++.. |...+.......++|+++|+||+|+.....+..+++..+...++.+++++|++++.|++++|++|.+
T Consensus 80 ~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 80 ITDRESFEEIKG-YREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred CCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence 999999999988 4444443323368999999999999876777778888888888899999999999999999999987
Q ss_pred H
Q 028300 175 K 175 (211)
Q Consensus 175 ~ 175 (211)
.
T Consensus 159 ~ 159 (160)
T cd00876 159 E 159 (160)
T ss_pred h
Confidence 5
No 100
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=8.9e-31 Score=183.92 Aligned_cols=153 Identities=23% Similarity=0.394 Sum_probs=119.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD 94 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (211)
+||+++|.+|||||||++++..+.+..+.|+.+..... +.. ..+.+.+||+||+..+...+..+++++|++++|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--VEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 48999999999999999999888886677777766542 222 46889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHHHHH
Q 028300 95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
+++..++.++...|...+... ...++|++|++||+|+.+.. ...+...... ...+.++++||++|.|++++|
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 77 SNDRERIGEAREELQRMLNED-ELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcH-HhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 999999999988555555432 23468999999999985432 2222222111 123457899999999999999
Q ss_pred HHHHH
Q 028300 170 EQLAL 174 (211)
Q Consensus 170 ~~i~~ 174 (211)
+||.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 101
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.5e-29 Score=165.60 Aligned_cols=168 Identities=49% Similarity=0.822 Sum_probs=153.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
.+..-+|-+++|+-|+|||.|++++....| .....+.|.++..+.+...+.++++++||+.|+++|+...+.+++.+-+
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaag 86 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAG 86 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccc
Confidence 345678999999999999999999999998 8889999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC 168 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 168 (211)
.+.|||++....+..+.. |+...+.. ..++..+++++||.|+...+++..+++++|+.+.+..|.++|+++|.++++.
T Consensus 87 almvyditrrstynhlss-wl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 87 ALMVYDITRRSTYNHLSS-WLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred eeEEEEehhhhhhhhHHH-HHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 999999999999999988 88777655 6788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 028300 169 FEQLALKIMEV 179 (211)
Q Consensus 169 ~~~i~~~~~~~ 179 (211)
|-+....+..+
T Consensus 165 fle~akkiyqn 175 (215)
T KOG0097|consen 165 FLETAKKIYQN 175 (215)
T ss_pred HHHHHHHHHHh
Confidence 86665555443
No 102
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.7e-30 Score=186.27 Aligned_cols=161 Identities=25% Similarity=0.412 Sum_probs=125.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
...+||+++|++|||||||++++..+.+..+.+|.+.++.. +. ...+.+.+||+||++.++..+..+++.+|++|+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~--~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVET--VE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEE--EE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 55799999999999999999999888886677777766542 22 255789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVE 166 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~ 166 (211)
|||+++++++.++...+...+... ...++|++||+||.|+.+.. ...+...... ...+.++++||++|.|++
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~-~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~ 167 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSED-ELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY 167 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCH-hhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence 999999999999887555554432 23578999999999985432 2222222111 112357799999999999
Q ss_pred HHHHHHHHHHHhc
Q 028300 167 QCFEQLALKIMEV 179 (211)
Q Consensus 167 ~l~~~i~~~~~~~ 179 (211)
++|+||.+.+.+.
T Consensus 168 e~~~~l~~~i~~~ 180 (182)
T PTZ00133 168 EGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877654
No 103
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=3.3e-29 Score=179.53 Aligned_cols=164 Identities=41% Similarity=0.616 Sum_probs=136.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
.||+++|++|+|||||++++....+ ..+.++....+ ...+...+..+.+.+||+||+.++...+..++..+|+++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 6899999999999999999998887 34555554333 344566777889999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
|+++..+++.+..+|...+... ...+.|+++|+||+|+...+.+...+...++..++.+++++||+++.|+.++|.++.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDML-GKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999998555555533 456789999999999976666666667777777888999999999999999999999
Q ss_pred HHHHhcc
Q 028300 174 LKIMEVP 180 (211)
Q Consensus 174 ~~~~~~~ 180 (211)
+.+....
T Consensus 160 ~~~~~~~ 166 (180)
T cd04137 160 EEIEKVE 166 (180)
T ss_pred HHHHHhc
Confidence 8876554
No 104
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=4.2e-29 Score=179.92 Aligned_cols=164 Identities=33% Similarity=0.552 Sum_probs=133.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
.||+|+|++|+|||||++++..+.+ ..+.++....+. ..+.+.+..+.+.+||++|+..+.......+..+|+++++|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998777 344444443333 34566777889999999999888877777889999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC----------CcccCHHHHHHHHHHcCC-eEEEeeccCC
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS----------ERVVSREEGIALAKEHGS-LFLECSAKTR 162 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~----------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (211)
|+++.++++.+...|...+... ..++|+++|+||+|+.+ .+.+..++...++...+. +|+++||++|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999986688888754 34699999999999843 234555677777888875 7999999999
Q ss_pred CcHHHHHHHHHHHHHhccc
Q 028300 163 ENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 163 ~gv~~l~~~i~~~~~~~~~ 181 (211)
.|++++|+++.+.+...++
T Consensus 159 ~~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 159 EGVDDVFEAATRAALLVRK 177 (187)
T ss_pred CCHHHHHHHHHHHHhcccC
Confidence 9999999999987765554
No 105
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=3e-29 Score=178.21 Aligned_cols=157 Identities=35% Similarity=0.625 Sum_probs=131.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+||+++|++|+|||||+++|.++.+ ..+.++.. ..........+..+.+.+||+||+.++.......++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 6899999999999999999999988 44444444 334445566788899999999999988888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc-----------ccCHHHHHHHHHHcCC-eEEEeeccC
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER-----------VVSREEGIALAKEHGS-LFLECSAKT 161 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~-----------~v~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (211)
|++++.++......|...+..+ ..+.|+++|+||+|+.+.. .+..++...+...++. +|+++||++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALT 157 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCC
Confidence 9999999999888788887765 3489999999999986544 2346667777777777 899999999
Q ss_pred CCcHHHHHHHHHH
Q 028300 162 RENVEQCFEQLAL 174 (211)
Q Consensus 162 ~~gv~~l~~~i~~ 174 (211)
+.|++++|++|.+
T Consensus 158 ~~gi~~l~~~i~~ 170 (171)
T cd00157 158 QEGVKEVFEEAIR 170 (171)
T ss_pred CCCHHHHHHHHhh
Confidence 9999999999875
No 106
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=1.3e-29 Score=180.54 Aligned_cols=158 Identities=25% Similarity=0.388 Sum_probs=123.7
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
..+..++|+++|++|||||||++++.+..+..+.++.+.... .+.+. .+.+.+||+||+..+...+..+++.+|++
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIK--TLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 345678999999999999999999998877767777764443 33333 57899999999998888889999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCc
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTREN 164 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~g 164 (211)
++|||++++.++.+....+...+. .....++|+++|+||+|+.+.. ..++...... ...++++++||++|.|
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 162 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQ-EERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEG 162 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHh-ChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence 999999999999888773333333 2234689999999999986543 3344444432 2356899999999999
Q ss_pred HHHHHHHHHH
Q 028300 165 VEQCFEQLAL 174 (211)
Q Consensus 165 v~~l~~~i~~ 174 (211)
++++|+++.+
T Consensus 163 i~~l~~~l~~ 172 (173)
T cd04154 163 LLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 107
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=4.7e-29 Score=179.19 Aligned_cols=166 Identities=39% Similarity=0.581 Sum_probs=148.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
..+||+++|.+|+|||+|..++....| ..+.|+.. +.+...+.+++....+.++|++|+.++..+...++...|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 468999999999999999999999999 66777777 5566777888999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 171 (211)
||++++..||+.+..++... ........+|+++|+||+|+...+.+..++...++..++++|+|+||+.+.+++++|..
T Consensus 81 Vysitd~~SF~~~~~l~~~I-~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~ 159 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQI-LRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYE 159 (196)
T ss_pred EEECCCHHHHHHHHHHHHHH-HHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHH
Confidence 99999999999999955555 33335567899999999999988999999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 028300 172 LALKIMEVP 180 (211)
Q Consensus 172 i~~~~~~~~ 180 (211)
++..+...+
T Consensus 160 L~r~~~~~~ 168 (196)
T KOG0395|consen 160 LVREIRLPR 168 (196)
T ss_pred HHHHHHhhh
Confidence 999887733
No 108
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.2e-28 Score=174.44 Aligned_cols=161 Identities=31% Similarity=0.415 Sum_probs=124.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD 94 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (211)
+||+++|.+|||||||+++|..+.+....+.....+ .....+.+..+.+.+||+||...+...+...+..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 489999999999999999999998844433322222 2334455677899999999998877777778899999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC--HHHHHHHHHHcC--CeEEEeeccCCCcHHHHHH
Q 028300 95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS--REEGIALAKEHG--SLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~--~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~ 170 (211)
++++++++.+...|...++.. ..++|+++|+||+|+.+..... .++...+...+. .+++++||+++.|++++|+
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~--~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRL--GVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 999999999876688887765 2489999999999996654321 222223333332 3799999999999999999
Q ss_pred HHHHHHHh
Q 028300 171 QLALKIME 178 (211)
Q Consensus 171 ~i~~~~~~ 178 (211)
.+.+.+..
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887653
No 109
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=1.2e-29 Score=179.10 Aligned_cols=151 Identities=25% Similarity=0.327 Sum_probs=121.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300 17 ILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV 95 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (211)
|+++|++|||||||+++|.+..+ ..+.|+.+.... .+....+.+.+||++|+..+...+..+++++|++++|||.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~----~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSV----AIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcceE----EEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 78999999999999999998877 566777775432 3445678899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH----HHHHHHHHHcCCeEEEeeccC------CCcH
Q 028300 96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR----EEGIALAKEHGSLFLECSAKT------RENV 165 (211)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~----~~~~~~~~~~~~~~~~~Sa~~------~~gv 165 (211)
++..++..... |+..+... ..++|+++|+||+|+...+.+.. .+...++...+++++++||++ ++||
T Consensus 78 t~~~s~~~~~~-~l~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v 154 (164)
T cd04162 78 ADSERLPLARQ-ELHQLLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV 154 (164)
T ss_pred CCHHHHHHHHH-HHHHHHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence 99999998887 55544322 36899999999999976554332 123444455678899999988 9999
Q ss_pred HHHHHHHHH
Q 028300 166 EQCFEQLAL 174 (211)
Q Consensus 166 ~~l~~~i~~ 174 (211)
+++|+.++.
T Consensus 155 ~~~~~~~~~ 163 (164)
T cd04162 155 KDLLSQLIN 163 (164)
T ss_pred HHHHHHHhc
Confidence 999998764
No 110
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=9.8e-28 Score=176.49 Aligned_cols=169 Identities=31% Similarity=0.538 Sum_probs=143.3
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
......+||+++|++|||||||+++++.+.+ ..+.++.+.++....+..++..+.+.+||++|+..+..++..++.+++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 4556679999999999999999998888877 678889998888877777888999999999999999888888999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 167 (211)
++++|||+++..++..+.. |...+... ..++|+++++||+|+.+. .+.... ..+....++.++++|++++.|+++
T Consensus 84 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~--~~~~~i~lv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPN-WHRDIVRV--CENIPIVLVGNKVDVKDR-QVKARQ-ITFHRKKNLQYYDISAKSNYNFEK 158 (215)
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECccCccc-cCCHHH-HHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999987 77776644 357899999999998543 233332 356667788999999999999999
Q ss_pred HHHHHHHHHHhccch
Q 028300 168 CFEQLALKIMEVPSL 182 (211)
Q Consensus 168 l~~~i~~~~~~~~~~ 182 (211)
+|.+|.+.+......
T Consensus 159 ~f~~ia~~l~~~p~~ 173 (215)
T PTZ00132 159 PFLWLARRLTNDPNL 173 (215)
T ss_pred HHHHHHHHHhhcccc
Confidence 999999998877654
No 111
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=9.4e-29 Score=176.18 Aligned_cols=155 Identities=26% Similarity=0.433 Sum_probs=121.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
..++|+++|++|+|||||++++..+.+..+.++.+.++.. +.. ..+.+.+||+||+..+...+..++..+|++++|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEE--IVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEE--EEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 4689999999999999999999988886677777766542 222 357899999999999988899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-----HHcCCeEEEeeccCCCcHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-----KEHGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~ 167 (211)
+|+++.+++......+...+... ...++|+++++||+|+... ...++..+.. ...+++++++||+++.|+++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~-~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHE-DLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 99999999888877455554432 2357999999999998542 2333322221 12345799999999999999
Q ss_pred HHHHHHH
Q 028300 168 CFEQLAL 174 (211)
Q Consensus 168 l~~~i~~ 174 (211)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999864
No 112
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=5.7e-29 Score=175.06 Aligned_cols=167 Identities=33% Similarity=0.580 Sum_probs=148.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC-CEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA-GKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
...+|++++|+..+|||+|+-.+..+.| ..+.||.. +.+...+.++ +..+.+.+|||+|+++|+.+++..++++|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3578999999999999999999999988 67778777 5555667774 9999999999999999999888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEE
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLE 156 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~ 156 (211)
++||++.+++|++++...|.+++.++ .++.|+++|++|.||.+. ..+..++...+++..|+ .|+|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~E 158 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLE 158 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeee
Confidence 99999999999999999999999987 689999999999999632 35777888999999995 6999
Q ss_pred eeccCCCcHHHHHHHHHHHHHhccc
Q 028300 157 CSAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 157 ~Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
|||+++.|++++|+..+...+....
T Consensus 159 cSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 159 CSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred ehhhhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999998877655
No 113
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=5.3e-29 Score=174.84 Aligned_cols=152 Identities=24% Similarity=0.350 Sum_probs=116.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV 95 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (211)
||+++|++++|||||++++..+.+..+.++.+.+... + +.....+.+||+||+..+...+..++..+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVET--V--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEE--E--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 6899999999999999999888776666666655442 2 23457899999999999998899999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHHHHHH
Q 028300 96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
+++.++......|...+... ...++|+++|+||+|+.+.. ...+...... ..+.+++++||+++.|++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEE-ELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCHHHHHHHHHHHHHHHhch-hhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 99988877766555555432 23579999999999986433 2222221111 1234699999999999999999
Q ss_pred HHHH
Q 028300 171 QLAL 174 (211)
Q Consensus 171 ~i~~ 174 (211)
+|.+
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9864
No 114
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.96 E-value=2.9e-28 Score=173.50 Aligned_cols=159 Identities=32% Similarity=0.455 Sum_probs=130.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
..+.+||+++|+.|||||||++++..+.+....||.|.......+ .++.+.+||++|+..++..|..++.++|++|
T Consensus 11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred cCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeee----CcEEEEEEeccccccccccceeeccccceeE
Confidence 478999999999999999999999988777777888877664333 4567899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH------HcCCeEEEeeccCCCc
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK------EHGSLFLECSAKTREN 164 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~g 164 (211)
||+|.++.+.+.+....+...+... ...++|++|++||.|+.+. ...++...... ...+.++.|||.+|.|
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~-~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDP-ELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSG-GGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEecccceeecccccchhhhcchh-hcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 9999999999999988666666543 4468999999999998654 34444443332 1334589999999999
Q ss_pred HHHHHHHHHHHH
Q 028300 165 VEQCFEQLALKI 176 (211)
Q Consensus 165 v~~l~~~i~~~~ 176 (211)
+.+.++||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999864
No 115
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=3.4e-28 Score=175.73 Aligned_cols=157 Identities=24% Similarity=0.335 Sum_probs=123.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
.+.++|+++|++|||||||++++.+..+..+.++.+.... .+.+. +..+.+||+||+..+...+..+++++|++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~--~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSE--ELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4579999999999999999999998887666666665443 33333 4678999999999888888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH----------------cCCeEE
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE----------------HGSLFL 155 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~----------------~~~~~~ 155 (211)
|+|+++..++......+...+... ...+.|+++++||+|+.. .+..++.+..... ..++++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDE-ELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCc-cccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 999999988888777444444322 346799999999999854 3455555554432 224689
Q ss_pred EeeccCCCcHHHHHHHHHHH
Q 028300 156 ECSAKTRENVEQCFEQLALK 175 (211)
Q Consensus 156 ~~Sa~~~~gv~~l~~~i~~~ 175 (211)
+|||+++.|++++|+||.+.
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EeEecCCCChHHHHHHHHhh
Confidence 99999999999999999875
No 116
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.96 E-value=8.3e-28 Score=161.03 Aligned_cols=164 Identities=24% Similarity=0.381 Sum_probs=137.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
..+++++|.++|..||||||++++|.+...+...|+.|....+.. ...+++++||.+|+...+..|+.++.+.|++
T Consensus 12 ~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~----~~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 12 LKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLE----YKGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEE----ecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 356799999999999999999999999988888899998887444 4778999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc---cCH-HHHHHHHHHcCCeEEEeeccCCCcH
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV---VSR-EEGIALAKEHGSLFLECSAKTRENV 165 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~---v~~-~~~~~~~~~~~~~~~~~Sa~~~~gv 165 (211)
|+|+|.+|+..+++....+...+... ...+.|++|++||.|+...-. +.. .....+++...++++.||+.+|+++
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~ee-rlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLVEE-RLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhhh-hhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 99999999999999888666666533 456799999999999963321 111 1123444667789999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028300 166 EQCFEQLALKIME 178 (211)
Q Consensus 166 ~~l~~~i~~~~~~ 178 (211)
.+-++|+...+.+
T Consensus 167 ~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 167 LEGIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999887
No 117
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=9.8e-28 Score=173.53 Aligned_cols=147 Identities=28% Similarity=0.427 Sum_probs=123.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC-----CEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA-----GKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
+||+++|.+|+|||||++++..+.| ..+.+|.+.++....+.+. +..+.+.+||++|++.|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 5899999999999999999999988 6677888877776666653 467899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhc------------------cCCCccEEEEeecCCCCCCcccCHHH----HHHH
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYS------------------TNQDCVKMLVGNKVDRDSERVVSREE----GIAL 146 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------------~~~~~p~viv~nK~Dl~~~~~v~~~~----~~~~ 146 (211)
+|+|||+++.+|++++.. |...+.... ...++|++||+||.|+.+++.+.... ...+
T Consensus 81 iIlVyDvtn~~Sf~~l~~-W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQR-WSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHH-HHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhH
Confidence 999999999999999987 888875431 13478999999999997665555442 3456
Q ss_pred HHHcCCeEEEeeccCC
Q 028300 147 AKEHGSLFLECSAKTR 162 (211)
Q Consensus 147 ~~~~~~~~~~~Sa~~~ 162 (211)
+++.+++.++.++.++
T Consensus 160 a~~~~~~~i~~~c~~~ 175 (202)
T cd04102 160 AEQGNAEEINLNCTNG 175 (202)
T ss_pred HHhcCCceEEEecCCc
Confidence 7889999999998875
No 118
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.96 E-value=1.4e-28 Score=173.28 Aligned_cols=152 Identities=22% Similarity=0.331 Sum_probs=115.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
+|+++|++|||||||+++|.+..+ ..+.++.+..... +....+.+.+||+||+..+..++..+++++|++++|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES----FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE----EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 4566777755432 2234678999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhc--cCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYS--TNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVE 166 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~ 166 (211)
|+++..++..... |...+.... ...++|+++|+||+|+.+.. ...+...... ...++++++||++|.|++
T Consensus 77 D~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 77 DSSDRLRLVVVKD-ELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred eCCcHHHHHHHHH-HHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 9999998887776 444442221 23579999999999986532 2222222111 123458999999999999
Q ss_pred HHHHHHHH
Q 028300 167 QCFEQLAL 174 (211)
Q Consensus 167 ~l~~~i~~ 174 (211)
++|++|.+
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999864
No 119
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=3.3e-28 Score=171.05 Aligned_cols=153 Identities=27% Similarity=0.419 Sum_probs=117.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV 95 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (211)
+|+++|++|||||||++++....+....++.+.+... +.. .....+.+||+||+..+...+..++..+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~--~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEM--LQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEE--EEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 5899999999999999999999886666776655432 222 2457899999999999888888899999999999999
Q ss_pred CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH------HHcCCeEEEeeccCCCcHHHHH
Q 028300 96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA------KEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
+++.++......+...+... ...+.|+++|+||+|+.... ...+..... ...+++++++||++|.|++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 78 SDEARLDESQKELKHILKNE-HIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CcHHHHHHHHHHHHHHHhch-hhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 99998888877444444322 33589999999999985432 222322211 1134579999999999999999
Q ss_pred HHHHH
Q 028300 170 EQLAL 174 (211)
Q Consensus 170 ~~i~~ 174 (211)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 120
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=2.2e-28 Score=173.13 Aligned_cols=154 Identities=20% Similarity=0.324 Sum_probs=117.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV 95 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (211)
+|+++|++|||||||++++.+.....+.++.+.... .+.. ..+.+.+||+||+..++.++..+++++|++++|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 489999999999999999997733667777776543 3333 457899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH-HH---HHHHHHHc--CCeEEEeeccCC------C
Q 028300 96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR-EE---GIALAKEH--GSLFLECSAKTR------E 163 (211)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~-~~---~~~~~~~~--~~~~~~~Sa~~~------~ 163 (211)
++..++.++.. |+..+.......++|++||+||+|+........ .. ...++... .+.++++||++| .
T Consensus 77 s~~~s~~~~~~-~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~ 155 (167)
T cd04161 77 SDDDRVQEVKE-ILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP 155 (167)
T ss_pred CchhHHHHHHH-HHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence 99999999888 555544332345899999999999966542111 11 11222122 246888999998 8
Q ss_pred cHHHHHHHHHH
Q 028300 164 NVEQCFEQLAL 174 (211)
Q Consensus 164 gv~~l~~~i~~ 174 (211)
|+++.|+||.+
T Consensus 156 g~~~~~~wl~~ 166 (167)
T cd04161 156 SIVEGLRWLLA 166 (167)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.96 E-value=4.7e-28 Score=169.98 Aligned_cols=152 Identities=27% Similarity=0.406 Sum_probs=120.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV 95 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (211)
||+++|.+|||||||++++.+..+..+.++.+.+..... + ....+.+||+||+..+...+..++..+|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVE--Y--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEE--E--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999999887777777776655332 2 357899999999999988899999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHHHHHH
Q 028300 96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
++++++......+....... ...+.|+++|+||+|+.... ..++..+... ...++++++||++|.|++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEE-ELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 99999999888444444433 35689999999999986543 2223322222 2346799999999999999999
Q ss_pred HHHH
Q 028300 171 QLAL 174 (211)
Q Consensus 171 ~i~~ 174 (211)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=1.2e-27 Score=171.92 Aligned_cols=158 Identities=22% Similarity=0.287 Sum_probs=122.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
..+.++|+++|.+|||||||++++.+..+..+.++.+.+... +.. .++.+.+||+||+..+...+..+++++|+++
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii 89 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEE--LAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV 89 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 356799999999999999999999988776666666554432 222 3578999999999998888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH------------cCCeEEEee
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE------------HGSLFLECS 158 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~------------~~~~~~~~S 158 (211)
+|+|+++++++......+...+... ...++|+++|+||+|+.. .+..++....... ....++++|
T Consensus 90 ~vvD~~~~~~~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S 166 (184)
T smart00178 90 YLVDAYDKERFAESKRELDALLSDE-ELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS 166 (184)
T ss_pred EEEECCcHHHHHHHHHHHHHHHcCh-hhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence 9999999999888877444444322 345789999999999853 3444554433311 123499999
Q ss_pred ccCCCcHHHHHHHHHHH
Q 028300 159 AKTRENVEQCFEQLALK 175 (211)
Q Consensus 159 a~~~~gv~~l~~~i~~~ 175 (211)
|+++.|++++++||.+.
T Consensus 167 a~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 167 VVRRMGYGEGFKWLSQY 183 (184)
T ss_pred cccCCChHHHHHHHHhh
Confidence 99999999999999765
No 123
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=1.3e-26 Score=164.81 Aligned_cols=143 Identities=38% Similarity=0.637 Sum_probs=125.4
Q ss_pred CC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhc
Q 028300 38 SV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYS 116 (211)
Q Consensus 38 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~ 116 (211)
.| +.+.+|.+.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++++|+.+.. |+..+...
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~-w~~~i~~~- 81 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK-WIQDILNE- 81 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHH-HHHHHHHh-
Confidence 45 5678899999988888888999999999999999999999999999999999999999999999987 77776544
Q ss_pred cCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHHHhccch
Q 028300 117 TNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPSL 182 (211)
Q Consensus 117 ~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~ 182 (211)
...++|+++|+||+|+...+.+..++...++..+++.|+++||++|.||+++|++|.+.+.+....
T Consensus 82 ~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred cCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 235789999999999977677888888888888888999999999999999999999998776544
No 124
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=2.9e-27 Score=167.36 Aligned_cols=152 Identities=27% Similarity=0.421 Sum_probs=114.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV-------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
+|+++|++|+|||||++++.+... ..+.++.+.... .+.+ ....+.+||+||+..+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEV--GNARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432 223344444443 2333 35789999999999999889999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-------cCCeEEEeeccC
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-------HGSLFLECSAKT 161 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~ 161 (211)
+++|+|+++.+++......+...+. .....++|+++++||+|+... ....+...+... .+++++++||++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~-~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLR-NEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHh-ChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence 9999999999888888774444443 223468999999999998553 333333333322 245799999999
Q ss_pred CCcHHHHHHHHHH
Q 028300 162 RENVEQCFEQLAL 174 (211)
Q Consensus 162 ~~gv~~l~~~i~~ 174 (211)
|.|++++++||.+
T Consensus 154 g~gv~e~~~~l~~ 166 (167)
T cd04160 154 GTGVREGIEWLVE 166 (167)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999865
No 125
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.94 E-value=3.1e-26 Score=160.37 Aligned_cols=151 Identities=25% Similarity=0.416 Sum_probs=116.6
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300 17 ILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV 95 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (211)
|+++|++|+|||||++++.+.++ ..+.++.+..... ... ..+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 79999999999999999999988 5666766655542 222 337899999999999998899999999999999999
Q ss_pred CChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-----HHcCCeEEEeeccCCCcHHHHHH
Q 028300 96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-----KEHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
++..++......+...+.. ....++|+++|+||+|+.+.... ....... ....++++++|++++.|++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 78 ADRTALEAAKNELHDLLEK-PSLEGIPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCHHHHHHHHHHHHHHHcC-hhhcCCCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 9998888877744444432 23468899999999998654322 2221111 12335799999999999999999
Q ss_pred HHHH
Q 028300 171 QLAL 174 (211)
Q Consensus 171 ~i~~ 174 (211)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9875
No 126
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.94 E-value=5.1e-26 Score=161.94 Aligned_cols=156 Identities=22% Similarity=0.354 Sum_probs=118.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
...++|+++|++|+|||||++++.+..+..+.++.+.+... +... +..+.+||++|+..+...+..+++++|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~--i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKT--VQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEE--EEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999999998776677777755442 2333 4678999999998888888888999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-----CCeEEEeeccCCCcHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-----GSLFLECSAKTRENVE 166 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~ 166 (211)
|+|+++..++......+...+... ...++|+++++||+|+.+... .++........ ..+++++||++|.|++
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~ 164 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEE-KLAGVPVLVFANKQDLATAAP--AEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ 164 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECCCCccCCC--HHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence 999999888888777444444432 345799999999999854332 22222111111 1247899999999999
Q ss_pred HHHHHHHH
Q 028300 167 QCFEQLAL 174 (211)
Q Consensus 167 ~l~~~i~~ 174 (211)
++|+||.+
T Consensus 165 ~~~~~l~~ 172 (173)
T cd04155 165 EGMNWVCK 172 (173)
T ss_pred HHHHHHhc
Confidence 99999865
No 127
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.4e-26 Score=159.14 Aligned_cols=167 Identities=20% Similarity=0.333 Sum_probs=140.5
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
.....++.+|+++|.-++||||++++|..+++-...||.|.......+. .+.+.+||.+|+..++.+|..++.+.+
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~yk----n~~f~vWDvGGq~k~R~lW~~Y~~~t~ 86 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYK----NISFTVWDVGGQEKLRPLWKHYFQNTQ 86 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEc----ceEEEEEecCCCcccccchhhhccCCc
Confidence 3456789999999999999999999999999977799999999866663 789999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc---cCHHHHHHHHHHcCCeEEEeeccCCCc
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV---VSREEGIALAKEHGSLFLECSAKTREN 164 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~---v~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (211)
++|||+|.+|.+.+.++...+..++.+. ...+.|+++.+||.|++..-. +.............+.+..++|.+|+|
T Consensus 87 ~lIfVvDS~Dr~Ri~eak~eL~~~l~~~-~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 87 GLIFVVDSSDRERIEEAKEELHRMLAEP-ELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred EEEEEEeCCcHHHHHHHHHHHHHHHcCc-ccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence 9999999999999999999788887755 467999999999999865533 222222222233456789999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028300 165 VEQCFEQLALKIMEV 179 (211)
Q Consensus 165 v~~l~~~i~~~~~~~ 179 (211)
+.+.++|+.+.+.+.
T Consensus 166 L~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 166 LYEGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987654
No 128
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=2.5e-25 Score=168.55 Aligned_cols=143 Identities=29% Similarity=0.484 Sum_probs=119.4
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC-------------CEEEEEEEEeCCChhh
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA-------------GKRLKLTIWDTAGQER 74 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~D~~g~~~ 74 (211)
......+||+|+|..|||||||+++|..+.+ ..+.++.+.++....+.+. +..+.+.|||++|++.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 3456679999999999999999999999988 5677888888776666654 2468899999999999
Q ss_pred hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhcc-----------CCCccEEEEeecCCCCCCc---c---
Q 028300 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYST-----------NQDCVKMLVGNKVDRDSER---V--- 137 (211)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-----------~~~~p~viv~nK~Dl~~~~---~--- 137 (211)
|..++..+++++|++|+|||+++..+++++.. |+..+..... ..++|++||+||+|+...+ .
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~k-Wl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~ 174 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQK-WASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG 174 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHH-HHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence 99999999999999999999999999999988 8888876521 1358999999999996543 2
Q ss_pred cCHHHHHHHHHHcCC
Q 028300 138 VSREEGIALAKEHGS 152 (211)
Q Consensus 138 v~~~~~~~~~~~~~~ 152 (211)
+..+++++++..+++
T Consensus 175 ~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 175 NLVDAARQWVEKQGL 189 (334)
T ss_pred ccHHHHHHHHHHcCC
Confidence 357888999988774
No 129
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.94 E-value=1.3e-27 Score=162.50 Aligned_cols=173 Identities=31% Similarity=0.510 Sum_probs=159.4
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG 85 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (211)
.....+..+|++|+|..++||||+|.+++.+-| ..+..+.++++....+.+..+++.+.+||++|+++|+....+++++
T Consensus 13 ~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrg 92 (246)
T KOG4252|consen 13 DETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRG 92 (246)
T ss_pred CchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcc
Confidence 345678889999999999999999999999988 7888999999988888888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV 165 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 165 (211)
+.+.++||+.+|..||+.... |.+.+.. +...+|.++|-||+|+.+...+...+.+.+++.+...++.+|++...++
T Consensus 93 aqa~vLVFSTTDr~SFea~~~-w~~kv~~--e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV 169 (246)
T KOG4252|consen 93 AQASVLVFSTTDRYSFEATLE-WYNKVQK--ETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV 169 (246)
T ss_pred ccceEEEEecccHHHHHHHHH-HHHHHHH--HhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 999999999999999999999 8888765 4779999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccch
Q 028300 166 EQCFEQLALKIMEVPSL 182 (211)
Q Consensus 166 ~~l~~~i~~~~~~~~~~ 182 (211)
..+|..+.+.+......
T Consensus 170 ~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 170 MHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988877654
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=2.2e-25 Score=157.86 Aligned_cols=156 Identities=17% Similarity=0.133 Sum_probs=106.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc---------cchhhhccC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR---------TLTSSYYRG 85 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~ 85 (211)
.+|+++|.+|+|||||+++|.+..+.. .+..+++............+.+.+|||||..... .........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEV-APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCcc-CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 379999999999999999999887632 1122222222222233345789999999974211 001111223
Q ss_pred CcEEEEEEECCChhhH--HHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC
Q 028300 86 AQGIILVYDVTRRETF--TNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (211)
+|++++|+|+++..++ +.... |...+... ..+.|+++|+||+|+.....+.. ...+....+.+++++||+++.
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~-~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLS-LFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEE 154 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHH-HHHHHHhh--cCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccC
Confidence 6899999999987543 44444 66665533 24799999999999965544332 344445556789999999999
Q ss_pred cHHHHHHHHHHHH
Q 028300 164 NVEQCFEQLALKI 176 (211)
Q Consensus 164 gv~~l~~~i~~~~ 176 (211)
|++++|+++.+.+
T Consensus 155 gi~~l~~~l~~~~ 167 (168)
T cd01897 155 GVDEVKNKACELL 167 (168)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998876
No 131
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=1.9e-25 Score=159.85 Aligned_cols=153 Identities=22% Similarity=0.276 Sum_probs=111.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC-------C-CCCCC------ccceeeEEEEEEE-----CCEEEEEEEEeCCChhhhc
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS-------V-DDLSP------TIGVDFKIKLLTV-----AGKRLKLTIWDTAGQERFR 76 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~-------~-~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~~~ 76 (211)
+|+++|++++|||||+++|++.. + ..+.+ +.+.++....... ++..+.+.||||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 69999999999999999998742 1 11222 2234444333222 5567889999999999998
Q ss_pred cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC---e
Q 028300 77 TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS---L 153 (211)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~---~ 153 (211)
..+..+++.+|++|+|||+++..+...... |.... ..++|+++|+||+|+.+.. ......++...+++ .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~-~~~~~-----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 153 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLAN-FYLAL-----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSE 153 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHH-HHHHH-----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCccc
Confidence 888889999999999999998766555544 43222 2478999999999985432 11222344455555 4
Q ss_pred EEEeeccCCCcHHHHHHHHHHHH
Q 028300 154 FLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 154 ~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
++++||++|.|++++|++|.+.+
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 154 AILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEEeeccCCCCHHHHHHHHHhhC
Confidence 89999999999999999998764
No 132
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=1.3e-25 Score=159.29 Aligned_cols=157 Identities=21% Similarity=0.220 Sum_probs=107.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEE-EEEEEEeCCChhh----hccchhhh---ccCCc
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKR-LKLTIWDTAGQER----FRTLTSSY---YRGAQ 87 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~g~~~----~~~~~~~~---~~~~d 87 (211)
+|+++|.+|||||||+++|.+.... ....++++.......+.... ..+.+|||||..+ ...+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-ccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 6899999999999999999976541 11111222211111121122 4799999999632 22233333 34699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHH-cCCeEEEeeccCCCc
Q 028300 88 GIILVYDVTRR-ETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKE-HGSLFLECSAKTREN 164 (211)
Q Consensus 88 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~g 164 (211)
++++|+|++++ ++++.+.. |.+.+..... ..++|+++|+||+|+.+...+. .....+... .+.+++++|++++.|
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~-~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKT-IRNELELYNPELLEKPRIVVLNKIDLLDEEELF-ELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEEecCCCCCHHHHHHH-HHHHHHHhCccccccccEEEEEchhcCCchhhH-HHHHHHHhhCCCCCEEEEecCCCCC
Confidence 99999999998 78888776 7777654421 2478999999999986554432 333344444 367899999999999
Q ss_pred HHHHHHHHHHH
Q 028300 165 VEQCFEQLALK 175 (211)
Q Consensus 165 v~~l~~~i~~~ 175 (211)
++++|++|.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999998865
No 133
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.94 E-value=2.6e-25 Score=172.02 Aligned_cols=163 Identities=18% Similarity=0.149 Sum_probs=117.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECC-EEEEEEEEeCCChhhh----ccch---hhhccCCc
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAG-KRLKLTIWDTAGQERF----RTLT---SSYYRGAQ 87 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~----~~~~---~~~~~~~d 87 (211)
.|+++|.||||||||+++|.+.... ....++++.......+.. ....+.+||+||..+- ..+. ...++.++
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~-va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCc-cCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 6899999999999999999986542 222233333333322222 3356899999996421 1222 33456789
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 166 (211)
++++|+|+++.++++++.. |..++..+.. ..++|+++|+||+|+.+...+.......+....+++++++||+++.|++
T Consensus 239 vlI~ViD~s~~~s~e~~~~-~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~ 317 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKT-IRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD 317 (335)
T ss_pred EEEEEEcCCCCCCHHHHHH-HHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence 9999999998878888877 8888876522 2478999999999997655444344444445567889999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 028300 167 QCFEQLALKIMEVP 180 (211)
Q Consensus 167 ~l~~~i~~~~~~~~ 180 (211)
+++++|.+.+.+.+
T Consensus 318 eL~~~L~~~l~~~~ 331 (335)
T PRK12299 318 ELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999998876543
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.93 E-value=2.9e-24 Score=150.11 Aligned_cols=158 Identities=27% Similarity=0.476 Sum_probs=120.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
.+||+++|.+|+|||||++++....+ ..+.++.+.+.....+...+..+.+.+||+||+..+...+....++++.++++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 47999999999999999999998886 44455556566555566666668899999999999888888889999999999
Q ss_pred EECCCh-hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300 93 YDVTRR-ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171 (211)
Q Consensus 93 ~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 171 (211)
+|+... .++......|...+...... +.|+++++||.|+.... ........+......+++++||.++.|+.++|++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence 998876 66666653355555544222 88999999999986543 2333333333334567999999999999999998
Q ss_pred HH
Q 028300 172 LA 173 (211)
Q Consensus 172 i~ 173 (211)
|.
T Consensus 159 l~ 160 (161)
T TIGR00231 159 VE 160 (161)
T ss_pred hh
Confidence 63
No 135
>PRK15494 era GTPase Era; Provisional
Probab=99.93 E-value=8.6e-25 Score=170.18 Aligned_cols=167 Identities=22% Similarity=0.298 Sum_probs=119.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh-hccch-------hhhc
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER-FRTLT-------SSYY 83 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~-------~~~~ 83 (211)
.+.++|+++|.+|||||||+|+|.+..+..+.+..+++.......+...+.++.||||||..+ +..+. ...+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 466799999999999999999999888765556555554433333333345789999999743 22211 2346
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC--CeEEEeeccC
Q 028300 84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG--SLFLECSAKT 161 (211)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~ 161 (211)
..+|++++|+|..+ ++......|...+... +.|.++|+||+|+.+. ...+...+..... ..++++||++
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~~----~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAkt 200 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRSL----NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISALS 200 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHhc----CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEeccC
Confidence 79999999999765 3444433355555432 5677899999998543 2334444444433 5799999999
Q ss_pred CCcHHHHHHHHHHHHHhccchhcccc
Q 028300 162 RENVEQCFEQLALKIMEVPSLLEEGS 187 (211)
Q Consensus 162 ~~gv~~l~~~i~~~~~~~~~~~~~~~ 187 (211)
|.|++++|++|.+.+.+....++...
T Consensus 201 g~gv~eL~~~L~~~l~~~~~~~~~~~ 226 (339)
T PRK15494 201 GKNIDGLLEYITSKAKISPWLYAEDD 226 (339)
T ss_pred ccCHHHHHHHHHHhCCCCCCCCCCCC
Confidence 99999999999999999988887764
No 136
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.93 E-value=1.1e-24 Score=165.25 Aligned_cols=163 Identities=18% Similarity=0.095 Sum_probs=115.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc--------chhhhccCCc
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT--------LTSSYYRGAQ 87 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d 87 (211)
+|+++|.+|||||||+|+|.+..+....+.++++.............++.||||||...... .....+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999988755555555554433322222345789999999643211 1344678999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCcHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRENVE 166 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~ 166 (211)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.+.... ......+....+. +++++||++|.|++
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN----LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh----cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 999999999876654 224444432 47899999999998643221 2223333333444 79999999999999
Q ss_pred HHHHHHHHHHHhccchhccc
Q 028300 167 QCFEQLALKIMEVPSLLEEG 186 (211)
Q Consensus 167 ~l~~~i~~~~~~~~~~~~~~ 186 (211)
+++++|.+.+.+....++..
T Consensus 154 ~L~~~l~~~l~~~~~~~~~~ 173 (270)
T TIGR00436 154 FLAAFIEVHLPEGPFRYPED 173 (270)
T ss_pred HHHHHHHHhCCCCCCCCCCc
Confidence 99999999988877766554
No 137
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.93 E-value=1.3e-24 Score=158.65 Aligned_cols=156 Identities=20% Similarity=0.184 Sum_probs=109.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh---------hccchhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER---------FRTLTSS 81 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~ 81 (211)
+..++|+++|++|||||||++++.+..+ ....+..........+.+.+ ...+.+||+||..+ +... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRST-LE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence 4468999999999999999999998764 22111212222222333333 23789999999632 1111 12
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300 82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT 161 (211)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 161 (211)
.+..+|++++|+|++++.++..... |...+... ...++|+++|+||+|+.+..... ......+.+++++||++
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~-~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIET-VEKVLKEL-GAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKT 189 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHH-HHHHHHHc-CcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCC
Confidence 3568999999999999888777655 66666544 33578999999999986543321 23344567899999999
Q ss_pred CCcHHHHHHHHHHHH
Q 028300 162 RENVEQCFEQLALKI 176 (211)
Q Consensus 162 ~~gv~~l~~~i~~~~ 176 (211)
+.|+++++++|.+.+
T Consensus 190 ~~gi~~l~~~L~~~~ 204 (204)
T cd01878 190 GEGLDELLEAIEELL 204 (204)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999987753
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=7.3e-25 Score=151.09 Aligned_cols=134 Identities=22% Similarity=0.225 Sum_probs=98.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh-----hhccchhhhccCCcEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE-----RFRTLTSSYYRGAQGII 90 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~i 90 (211)
||+++|++|+|||||+++|.+..+. +.++.+.+ +. -.+||+||.. .+..+.. .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~-------~~-----~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVE-------YN-----DGAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEE-------Ec-----CeeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999987652 22222211 11 1689999972 3444333 478999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCcHHHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRENVEQCF 169 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~ 169 (211)
+|||++++.++... . |.... ..|+++|+||+|+.+ .....++..+++...+. +++++||+++.|++++|
T Consensus 68 lv~d~~~~~s~~~~-~-~~~~~-------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 68 LVQSATDPESRFPP-G-FASIF-------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred EEecCCCCCcCCCh-h-HHHhc-------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence 99999999887552 2 43321 249999999999864 33455566666777665 79999999999999999
Q ss_pred HHHH
Q 028300 170 EQLA 173 (211)
Q Consensus 170 ~~i~ 173 (211)
+++.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 9874
No 139
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=1.8e-23 Score=154.29 Aligned_cols=169 Identities=38% Similarity=0.582 Sum_probs=135.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
..+||+++|++|||||||+++|.++.+ ..+.++.+..+...........+.+.+||++|+.+++.++..++..++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 349999999999999999999999998 5566777777776666665558899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc------------ccCHHHHHHHHHHc---CCeEEE
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER------------VVSREEGIALAKEH---GSLFLE 156 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~------------~v~~~~~~~~~~~~---~~~~~~ 156 (211)
++|.++..++.++...|...+... .....|+++++||+|+.... .............. ...+++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELREL-APDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHh-CCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 999999777777777799888765 22579999999999997653 22222222222222 233899
Q ss_pred eecc--CCCcHHHHHHHHHHHHHhccch
Q 028300 157 CSAK--TRENVEQCFEQLALKIMEVPSL 182 (211)
Q Consensus 157 ~Sa~--~~~gv~~l~~~i~~~~~~~~~~ 182 (211)
+|+. .+.++.++|.+++..+......
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~~~~~ 190 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLEEIEK 190 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHHhhhh
Confidence 9999 9999999999999988765433
No 140
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=1.1e-23 Score=146.00 Aligned_cols=153 Identities=54% Similarity=0.844 Sum_probs=119.7
Q ss_pred EEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECC
Q 028300 19 LIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVT 96 (211)
Q Consensus 19 v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 96 (211)
++|++|+|||||++++.+... ....++. .+..............+.+||+||...+...+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998876 3333444 6666666666677889999999999888877788899999999999999
Q ss_pred ChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHH-HHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 97 RRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREE-GIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 97 ~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~-~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
++.++..... |...........++|+++++||+|+.......... .........++++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~-~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKE-WLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHH-HHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 9999888887 42222222356789999999999986554433322 3344445678899999999999999999975
No 141
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=5.1e-24 Score=139.30 Aligned_cols=159 Identities=21% Similarity=0.384 Sum_probs=136.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
.++.+|+++|..++||||++..|..+......||.|.....+++ ..+.+.+||.+|++..+.+|++++...-++|+
T Consensus 15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 15 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred cccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 35899999999999999999999999888999999998886665 56889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVE 166 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~ 166 (211)
|+|..+.+.+++++..+...+... .....|++|.+||.|++.+. ...++..+.. ...+-+.++++.++.|+.
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~-em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDR-EMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCH-hhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHH
Confidence 999999999999999888888765 66789999999999997654 4444444433 234568999999999999
Q ss_pred HHHHHHHHHHH
Q 028300 167 QCFEQLALKIM 177 (211)
Q Consensus 167 ~l~~~i~~~~~ 177 (211)
+-|.|+.+.+.
T Consensus 168 eglswlsnn~~ 178 (180)
T KOG0071|consen 168 EGLSWLSNNLK 178 (180)
T ss_pred HHHHHHHhhcc
Confidence 99999988654
No 142
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=9.6e-24 Score=148.76 Aligned_cols=150 Identities=22% Similarity=0.202 Sum_probs=100.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC---C-CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV---D-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
.|+++|.+|+|||||+++|.+... . ...+....+.....+.+.. ...+.+|||||+.++.......+..+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 589999999999999999996432 1 1122222222222333331 4579999999998887666677889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CHHHHHHHHHH---cCCeEEEeeccCCC
Q 028300 92 VYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SREEGIALAKE---HGSLFLECSAKTRE 163 (211)
Q Consensus 92 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~~~~~~~~~~---~~~~~~~~Sa~~~~ 163 (211)
|+|+++ .++.+.+. .+... ...|+++++||+|+...... ...+..+.... .+.+++++||+++.
T Consensus 81 V~d~~~~~~~~~~~~~~-----~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 81 VVAADEGIMPQTREHLE-----ILELL---GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred EEECCCCccHhHHHHHH-----HHHHh---CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 999987 33333222 12211 23499999999998654211 12233333333 35789999999999
Q ss_pred cHHHHHHHHHH
Q 028300 164 NVEQCFEQLAL 174 (211)
Q Consensus 164 gv~~l~~~i~~ 174 (211)
|++++++.+..
T Consensus 153 ~v~~l~~~l~~ 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHhh
Confidence 99999998754
No 143
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.92 E-value=4.5e-25 Score=151.73 Aligned_cols=148 Identities=20% Similarity=0.235 Sum_probs=102.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh------ccchhhhc--cCC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF------RTLTSSYY--RGA 86 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~------~~~~~~~~--~~~ 86 (211)
++|+++|.||+|||||+|+|.+... .....+|++.......+...+..+.++|+||.... ......++ .+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~-~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQ-KVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSE-EEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc-eecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 6899999999999999999999884 34455676666665555434477899999994222 22233333 689
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 166 (211)
|++++|+|++..+ .-.. +...+.. .++|+++++||+|+.....+.. +...+.+.+++|++.+||+++.|++
T Consensus 80 D~ii~VvDa~~l~---r~l~-l~~ql~e----~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 80 DLIIVVVDATNLE---RNLY-LTLQLLE----LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGID 150 (156)
T ss_dssp SEEEEEEEGGGHH---HHHH-HHHHHHH----TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred CEEEEECCCCCHH---HHHH-HHHHHHH----cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHH
Confidence 9999999999743 2232 3333332 3899999999999865544332 2456677789999999999999999
Q ss_pred HHHHHH
Q 028300 167 QCFEQL 172 (211)
Q Consensus 167 ~l~~~i 172 (211)
++++.|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 998875
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=3.2e-24 Score=156.26 Aligned_cols=155 Identities=22% Similarity=0.242 Sum_probs=103.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC-----------hhhhccchh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG-----------QERFRTLTS 80 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~ 80 (211)
...++|+++|.+|+|||||+++|.+..+. ....+++++....+... .+.+||+|| .+.++..+.
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 34689999999999999999999987763 22344555554444332 589999999 445555544
Q ss_pred hhc----cCCcEEEEEEECCChhhHHH---------HHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH
Q 028300 81 SYY----RGAQGIILVYDVTRRETFTN---------LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA 147 (211)
Q Consensus 81 ~~~----~~~d~~i~v~d~~~~~s~~~---------~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~ 147 (211)
.++ ..++++++|+|.++...+.. ....+...+. ..++|+++|+||+|+.+.. .+...++.
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~p~iiv~NK~Dl~~~~---~~~~~~~~ 154 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR----ELGIPPIVAVNKMDKIKNR---DEVLDEIA 154 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH----HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence 444 34578888888765322100 0000122222 3479999999999985443 22334444
Q ss_pred HHcCC---------eEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300 148 KEHGS---------LFLECSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 148 ~~~~~---------~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
..++. +++++||++| |+++++++|.+.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 44443 5899999999 9999999999876543
No 145
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=9.5e-24 Score=147.62 Aligned_cols=147 Identities=23% Similarity=0.220 Sum_probs=106.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc--------hhhhccCC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL--------TSSYYRGA 86 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~~~~ 86 (211)
++|+++|++|+|||||++++.+.......+..+++.......+......+.+||+||..++... ....+.++
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 5899999999999999999998775333333444333322222223467899999996554321 23467799
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 166 (211)
|++++|+|++++.+...... +.. ..+.|+++|+||+|+.+.... .......+++++||.++.|++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~-~~~-------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEI-LEL-------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred CEEEEEEECCCCCCHHHHHH-HHh-------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 99999999998777666544 222 357999999999998654433 233446789999999999999
Q ss_pred HHHHHHHHHH
Q 028300 167 QCFEQLALKI 176 (211)
Q Consensus 167 ~l~~~i~~~~ 176 (211)
+++++|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=2.5e-23 Score=147.27 Aligned_cols=155 Identities=21% Similarity=0.199 Sum_probs=104.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECC---EEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAG---KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
.|+++|.+|+|||||+++|....+... ...+.+.......+.. ....+.+|||||+..+..++...+..+|++++|
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v 80 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG-EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILV 80 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccc-cCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEE
Confidence 489999999999999999998877432 1112222222222222 367889999999998888888888999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH-HHHHHHHH----H--cCCeEEEeeccCCCcH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR-EEGIALAK----E--HGSLFLECSAKTRENV 165 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~-~~~~~~~~----~--~~~~~~~~Sa~~~~gv 165 (211)
+|+++........ ....+. ..++|+++|+||+|+........ .....+.. . ...+++++|++++.|+
T Consensus 81 ~d~~~~~~~~~~~--~~~~~~----~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (168)
T cd01887 81 VAADDGVMPQTIE--AIKLAK----AANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI 154 (168)
T ss_pred EECCCCccHHHHH--HHHHHH----HcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCH
Confidence 9999843222111 112222 24789999999999864321111 11111111 1 1357999999999999
Q ss_pred HHHHHHHHHHHH
Q 028300 166 EQCFEQLALKIM 177 (211)
Q Consensus 166 ~~l~~~i~~~~~ 177 (211)
++++++|.+...
T Consensus 155 ~~l~~~l~~~~~ 166 (168)
T cd01887 155 DDLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHHhhh
Confidence 999999987654
No 147
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=4e-23 Score=144.75 Aligned_cols=147 Identities=18% Similarity=0.214 Sum_probs=105.2
Q ss_pred EEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc------chhhhc--cCCcEE
Q 028300 19 LIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT------LTSSYY--RGAQGI 89 (211)
Q Consensus 19 v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~--~~~d~~ 89 (211)
++|.+|+|||||++++.+..+ ....+....+.....+.+++ ..+.+|||||+..+.. +...++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 589999999999999998764 33333333334334444443 5789999999876654 244555 489999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
++|+|+++.+... . +...+. ..++|+++|+||+|+.+...+... ...+...++.+++++|+.++.|+++++
T Consensus 79 i~v~d~~~~~~~~---~-~~~~~~----~~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 79 VNVVDATNLERNL---Y-LTLQLL----ELGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EEEeeCCcchhHH---H-HHHHHH----HcCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHH
Confidence 9999999865432 2 332222 237899999999999665444333 345566678899999999999999999
Q ss_pred HHHHHHH
Q 028300 170 EQLALKI 176 (211)
Q Consensus 170 ~~i~~~~ 176 (211)
+++.+.+
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9988763
No 148
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.91 E-value=1.5e-24 Score=142.84 Aligned_cols=160 Identities=21% Similarity=0.351 Sum_probs=130.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
..+..+.++|..+||||||++....+.+ ....|+.|.... .+....+.+.+||+||+..|+++|..+.+.+++++
T Consensus 18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aiv 93 (186)
T KOG0075|consen 18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIV 93 (186)
T ss_pred HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence 4567899999999999999999998877 777888887776 55567789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHH-HH----HHHHcCCeEEEeeccCCCcH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEG-IA----LAKEHGSLFLECSAKTRENV 165 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~-~~----~~~~~~~~~~~~Sa~~~~gv 165 (211)
||+|+.+++.++..+..+...+... ...++|+++++||.|+..+- ..... .. ......+-.|.+|+++..++
T Consensus 94 Y~VDaad~~k~~~sr~EL~~LL~k~-~l~gip~LVLGnK~d~~~AL--~~~~li~rmgL~sitdREvcC~siScke~~Ni 170 (186)
T KOG0075|consen 94 YVVDAADPDKLEASRSELHDLLDKP-SLTGIPLLVLGNKIDLPGAL--SKIALIERMGLSSITDREVCCFSISCKEKVNI 170 (186)
T ss_pred EEeecCCcccchhhHHHHHHHhcch-hhcCCcEEEecccccCcccc--cHHHHHHHhCccccccceEEEEEEEEcCCccH
Confidence 9999999999888888777777644 56799999999999986542 22221 11 11223355899999999999
Q ss_pred HHHHHHHHHHHHh
Q 028300 166 EQCFEQLALKIME 178 (211)
Q Consensus 166 ~~l~~~i~~~~~~ 178 (211)
+.+.+||++....
T Consensus 171 d~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 171 DITLDWLIEHSKS 183 (186)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999886543
No 149
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=8.3e-24 Score=171.74 Aligned_cols=162 Identities=22% Similarity=0.174 Sum_probs=112.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEE--EEEECCEEEEEEEEeCCCh----------hhhccch
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIK--LLTVAGKRLKLTIWDTAGQ----------ERFRTLT 79 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~D~~g~----------~~~~~~~ 79 (211)
+..++|+++|.+|+|||||+++|++.......+..+++.... .+..++ ..+.||||||. +.+..+.
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHH
Confidence 356999999999999999999999887644445555554433 334444 45689999994 2222222
Q ss_pred -hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC--HHHHHH-HHHHcCCeEE
Q 028300 80 -SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS--REEGIA-LAKEHGSLFL 155 (211)
Q Consensus 80 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~--~~~~~~-~~~~~~~~~~ 155 (211)
...++.+|++++|+|+++..++.+.. +...+. ..++|+++|+||+|+.+..... ..+... +.....++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~--~~~~~~----~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 360 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR--VLSMVI----EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRV 360 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEE
Confidence 23578999999999999987777664 333332 2478999999999996432111 111111 1112336899
Q ss_pred EeeccCCCcHHHHHHHHHHHHHhccc
Q 028300 156 ECSAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 156 ~~Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
++||++|.|++++|+.+.+.+.....
T Consensus 361 ~~SAk~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 361 NISAKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999987765543
No 150
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=3.4e-23 Score=165.82 Aligned_cols=155 Identities=22% Similarity=0.207 Sum_probs=113.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc--------hhhh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL--------TSSY 82 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~ 82 (211)
....++|+++|++|+|||||+|+|++.......+.++++.......+...+..+.+|||||..++... ....
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 35668999999999999999999998765444455565555444333334466799999997544322 2357
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCC
Q 028300 83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTR 162 (211)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (211)
++.+|++++|||++++.+++.. |...+. ..++|+++|+||+|+... . ...+...++.+++++|+++
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~----~~~~piIlV~NK~Dl~~~---~---~~~~~~~~~~~~~~vSak~- 345 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLN----KSKKPFILVLNKIDLKIN---S---LEFFVSSKVLNSSNLSAKQ- 345 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHh----hCCCCEEEEEECccCCCc---c---hhhhhhhcCCceEEEEEec-
Confidence 7899999999999998776654 443332 247899999999998543 1 1234456677899999998
Q ss_pred CcHHHHHHHHHHHHHhc
Q 028300 163 ENVEQCFEQLALKIMEV 179 (211)
Q Consensus 163 ~gv~~l~~~i~~~~~~~ 179 (211)
.|++++|+.+.+.+.+.
T Consensus 346 ~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 346 LKIKALVDLLTQKINAF 362 (442)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 69999999988887654
No 151
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=1.3e-23 Score=146.92 Aligned_cols=147 Identities=21% Similarity=0.104 Sum_probs=100.4
Q ss_pred EEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc--------chhhhccCCcEE
Q 028300 18 LLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT--------LTSSYYRGAQGI 89 (211)
Q Consensus 18 ~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~~~~~~~d~~ 89 (211)
+++|.+|+|||||+++|++..........+++..............+.+||+||+..+.. .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 479999999999999999875322222333333222222223346789999999876433 334567889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCcHHHH
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRENVEQC 168 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l 168 (211)
++|+|..+..+..... +...+.. .+.|+++|+||+|+.+.... .......+. +++++|++++.|++++
T Consensus 81 i~v~d~~~~~~~~~~~--~~~~~~~----~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (157)
T cd01894 81 LFVVDGREGLTPADEE--IAKYLRK----SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL 149 (157)
T ss_pred EEEEeccccCCccHHH--HHHHHHh----cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence 9999998754433321 2333332 36999999999998654332 222334455 7899999999999999
Q ss_pred HHHHHHH
Q 028300 169 FEQLALK 175 (211)
Q Consensus 169 ~~~i~~~ 175 (211)
|++|.+.
T Consensus 150 ~~~l~~~ 156 (157)
T cd01894 150 LDAILEL 156 (157)
T ss_pred HHHHHhh
Confidence 9999875
No 152
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.91 E-value=3.3e-23 Score=160.25 Aligned_cols=158 Identities=19% Similarity=0.168 Sum_probs=109.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEE--EEEECCEEEEEEEEeCCChhhh----ccchhh---hccC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIK--LLTVAGKRLKLTIWDTAGQERF----RTLTSS---YYRG 85 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~D~~g~~~~----~~~~~~---~~~~ 85 (211)
..|+++|.|+||||||+++|...... ....+.++.... .+.+. ....+.+||+||..+. ..+... .+..
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~-va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhier 235 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPK-IADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIER 235 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcc-ccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence 47899999999999999999987541 111112222211 22222 2367899999996421 122333 3457
Q ss_pred CcEEEEEEECCCh---hhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300 86 AQGIILVYDVTRR---ETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT 161 (211)
Q Consensus 86 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 161 (211)
+|++++|+|+++. ++++.+.. |..++..+.. ..++|++||+||+|+.+... ..+....+....+.+++++||++
T Consensus 236 ad~ll~VvD~s~~~~~~~~e~l~~-l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAkt 313 (329)
T TIGR02729 236 TRVLLHLIDISPLDGRDPIEDYEI-IRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALT 313 (329)
T ss_pred hCEEEEEEcCccccccCHHHHHHH-HHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccC
Confidence 9999999999986 56777766 7777665522 35789999999999965533 22333445555678899999999
Q ss_pred CCcHHHHHHHHHHHH
Q 028300 162 RENVEQCFEQLALKI 176 (211)
Q Consensus 162 ~~gv~~l~~~i~~~~ 176 (211)
+.|+++++++|.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998754
No 153
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=2.5e-23 Score=150.73 Aligned_cols=148 Identities=21% Similarity=0.193 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh--CCCCCC-------------CCccceeeEEEEEEECCEEEEEEEEeCCChhhhccch
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS--SSVDDL-------------SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLT 79 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 79 (211)
-+|+++|.+++|||||+++|++ +.+... ..+.+.+.......+......+.+||+||+.+|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999997 444222 1234555555555555667889999999999998889
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc-CHHHHHHHHH-------HcC
Q 028300 80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-SREEGIALAK-------EHG 151 (211)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-~~~~~~~~~~-------~~~ 151 (211)
..+++++|++++|||+++.. ...... +...+. ..++|+++|+||+|+...... ...+...+.. ..+
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~-~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRF-VLKKAL----ELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLD 156 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHH-HHHHHH----HcCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCc
Confidence 99999999999999998742 222222 333222 247899999999998643321 1233333332 236
Q ss_pred CeEEEeeccCCCcHHHH
Q 028300 152 SLFLECSAKTRENVEQC 168 (211)
Q Consensus 152 ~~~~~~Sa~~~~gv~~l 168 (211)
++++++||++|.|+.++
T Consensus 157 ~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 157 FPVLYASAKNGWASLNL 173 (194)
T ss_pred cCEEEeehhcccccccc
Confidence 78999999999887544
No 154
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.91 E-value=5.1e-23 Score=137.64 Aligned_cols=114 Identities=34% Similarity=0.619 Sum_probs=90.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCC---CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVD---DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
||+|+|++|||||||+++|++..+. ...+..+.+..............+.+||++|.+.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999998875 3445556666666667777777799999999998888777789999999999
Q ss_pred EECCChhhHHHHHHH--HHHHhhhhccCCCccEEEEeecCC
Q 028300 93 YDVTRRETFTNLSDV--WAKEVDLYSTNQDCVKMLVGNKVD 131 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~--~~~~~~~~~~~~~~p~viv~nK~D 131 (211)
||++++.+++.+... |+..+... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 999999999998663 44444433 45699999999998
No 155
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.90 E-value=2.8e-23 Score=167.19 Aligned_cols=151 Identities=23% Similarity=0.228 Sum_probs=110.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc--------hhhhc
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL--------TSSYY 83 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~~ 83 (211)
...++|+++|.+|+|||||+|+|++.......+.++++.......+...+..+.+|||||..++... ....+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 3458999999999999999999998775444444555444333333223457899999997654322 23367
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC
Q 028300 84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163 (211)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (211)
..+|++++|+|++++.++++... |.. ..+.|+++|+||+|+.+..... ...+.+++++||+++.
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~-l~~-------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~ 356 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEI-LEE-------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGE 356 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHH-HHh-------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCC
Confidence 89999999999999877765433 432 3478999999999996543221 2345679999999999
Q ss_pred cHHHHHHHHHHHHHh
Q 028300 164 NVEQCFEQLALKIME 178 (211)
Q Consensus 164 gv~~l~~~i~~~~~~ 178 (211)
|+++++++|.+.+..
T Consensus 357 GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 357 GIDELREAIKELAFG 371 (449)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998764
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=4.1e-23 Score=167.72 Aligned_cols=155 Identities=20% Similarity=0.180 Sum_probs=111.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh--------hccchhhhcc
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER--------FRTLTSSYYR 84 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~ 84 (211)
...+|+|+|.+|||||||+|+|++.......++++++...........+..+.+|||||... +...+..+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 34789999999999999999999887655566667665554444433445689999999652 3334556788
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCC
Q 028300 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRE 163 (211)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~ 163 (211)
.+|++|+|+|+++..+.... . +...+. ..++|+++|+||+|+.... .+....+ ..+. .++++||++|.
T Consensus 117 ~aD~il~VvD~~~~~s~~~~-~-i~~~l~----~~~~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~ 185 (472)
T PRK03003 117 TADAVLFVVDATVGATATDE-A-VARVLR----RSGKPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGR 185 (472)
T ss_pred hCCEEEEEEECCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCC
Confidence 99999999999987554332 2 444444 2479999999999985422 1111122 2333 35799999999
Q ss_pred cHHHHHHHHHHHHHh
Q 028300 164 NVEQCFEQLALKIME 178 (211)
Q Consensus 164 gv~~l~~~i~~~~~~ 178 (211)
|++++|++|.+.+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999998865
No 157
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=2.1e-23 Score=148.72 Aligned_cols=155 Identities=24% Similarity=0.240 Sum_probs=103.3
Q ss_pred EEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCE-EEEEEEEeCCChhh----hccc---hhhhccCCcEEE
Q 028300 19 LIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQER----FRTL---TSSYYRGAQGII 90 (211)
Q Consensus 19 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~----~~~~---~~~~~~~~d~~i 90 (211)
++|++|||||||+++|.+... ......+++........... ...+.+||+||..+ .+.+ ....+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998864 11111222221111112223 56789999999632 1222 233567899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHhhhhcc------CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEee
Q 028300 91 LVYDVTRR------ETFTNLSDVWAKEVDLYST------NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECS 158 (211)
Q Consensus 91 ~v~d~~~~------~s~~~~~~~~~~~~~~~~~------~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 158 (211)
+|+|+++. .++.+... |...+..... ..+.|+++|+||+|+..................+.+++++|
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEI-LNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEeccCCccccccCHHHHHHH-HHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 99999987 46766665 5555543322 14799999999999965544333222233334566799999
Q ss_pred ccCCCcHHHHHHHHHHH
Q 028300 159 AKTRENVEQCFEQLALK 175 (211)
Q Consensus 159 a~~~~gv~~l~~~i~~~ 175 (211)
++++.|++++++++...
T Consensus 159 a~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 159 AKTEEGLDELIRAIYEL 175 (176)
T ss_pred hhhhcCHHHHHHHHHhh
Confidence 99999999999998764
No 158
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.90 E-value=7.9e-23 Score=159.44 Aligned_cols=153 Identities=23% Similarity=0.210 Sum_probs=106.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChh---------hhccchhhh
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE---------RFRTLTSSY 82 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~ 82 (211)
..++|+++|.+|+|||||+|+|.+..+ ....+....+.....+.+.+ ...+.||||+|.. .|... ...
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~t-le~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRAT-LEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHH-HHH
Confidence 448999999999999999999998764 11112122223334444432 3478999999962 22222 234
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCC
Q 028300 83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTR 162 (211)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (211)
+.++|++++|+|++++.+.+.... |...+... ...++|+++|+||+|+.+...+ ... .....+++++||+++
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~-~~~~L~~l-~~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg 337 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEA-VEKVLEEL-GAEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTG 337 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHH-HHHHHHHh-ccCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCC
Confidence 789999999999999888777655 55555544 3357899999999998643221 111 112246899999999
Q ss_pred CcHHHHHHHHHHH
Q 028300 163 ENVEQCFEQLALK 175 (211)
Q Consensus 163 ~gv~~l~~~i~~~ 175 (211)
.|+++++++|.+.
T Consensus 338 ~GI~eL~~~I~~~ 350 (351)
T TIGR03156 338 EGLDLLLEAIAER 350 (351)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998764
No 159
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=1.5e-22 Score=155.47 Aligned_cols=168 Identities=18% Similarity=0.177 Sum_probs=116.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc--------cchhhhcc
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR--------TLTSSYYR 84 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~ 84 (211)
+.-.|+++|.+|||||||+|+|++.......+.+.++.............++.+|||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 4567999999999999999999988775555555554444333333344789999999954321 22344678
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC-CeEEEeeccCCC
Q 028300 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG-SLFLECSAKTRE 163 (211)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 163 (211)
.+|++++|+|+++... .....+...+. ..+.|+++|+||+|+.............+....+ .+++++||+++.
T Consensus 84 ~~D~il~vvd~~~~~~--~~~~~i~~~l~----~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 84 DVDLVLFVVDADEKIG--PGDEFILEKLK----KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred cCCEEEEEEeCCCCCC--hhHHHHHHHHh----hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 8999999999998322 12221333333 2478999999999996332222233334433333 579999999999
Q ss_pred cHHHHHHHHHHHHHhccchhccc
Q 028300 164 NVEQCFEQLALKIMEVPSLLEEG 186 (211)
Q Consensus 164 gv~~l~~~i~~~~~~~~~~~~~~ 186 (211)
|+++++++|.+.+.+....++..
T Consensus 158 gv~~L~~~L~~~l~~~~~~y~~~ 180 (292)
T PRK00089 158 NVDELLDVIAKYLPEGPPYYPED 180 (292)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999988777666654
No 160
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.90 E-value=2.2e-22 Score=162.46 Aligned_cols=162 Identities=23% Similarity=0.178 Sum_probs=113.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc-----------hh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL-----------TS 80 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-----------~~ 80 (211)
...++|+++|.+|+|||||+++|++.+.....+..+++.......+...+..+.+|||||..+.... ..
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 4568999999999999999999998876444555566555444443333457899999996443221 12
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-HH----cCCeEE
Q 028300 81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-KE----HGSLFL 155 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-~~----~~~~~~ 155 (211)
..++.+|++++|+|+++..+..+.. +...+. ..++|+++|+||+|+.+. ....++..... .. ..++++
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~--~~~~~~----~~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLR--IAGLIL----EAGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHH--HHHHHH----HcCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceE
Confidence 3678999999999999876665543 333332 247899999999998621 11112222111 12 247899
Q ss_pred EeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 156 ECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 156 ~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
++||++|.|++++|+++.+.+....
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~~ 347 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENAN 347 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999998776554
No 161
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=3.5e-22 Score=158.33 Aligned_cols=161 Identities=20% Similarity=0.233 Sum_probs=113.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCE-EEEEEEEeCCChhh----hccchhhh---ccCCc
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQER----FRTLTSSY---YRGAQ 87 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~----~~~~~~~~---~~~~d 87 (211)
.|+++|.|+||||||+++|++.... ....++++.......+... ...+.+||+||..+ ...+...+ +..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k-Ia~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK-IANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc-cccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 8999999999999999999987642 1223333433333322222 46799999999632 22233333 45689
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC
Q 028300 88 GIILVYDVTRR---ETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163 (211)
Q Consensus 88 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (211)
++++|+|+++. +.+++... |...+..+.. ..++|++||+||+|+... .+....+...++.+++++||+++.
T Consensus 239 llI~VID~s~~~~~dp~e~~~~-i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tge 313 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEK-INKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQ 313 (424)
T ss_pred EEEEEEeCCccccCChHHHHHH-HHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCC
Confidence 99999999864 56666665 7777766532 257899999999998432 233444555556789999999999
Q ss_pred cHHHHHHHHHHHHHhccch
Q 028300 164 NVEQCFEQLALKIMEVPSL 182 (211)
Q Consensus 164 gv~~l~~~i~~~~~~~~~~ 182 (211)
|+++++++|.+.+.+.+..
T Consensus 314 GI~eL~~~L~~~l~~~~~~ 332 (424)
T PRK12297 314 GLDELLYAVAELLEETPEF 332 (424)
T ss_pred CHHHHHHHHHHHHHhCccc
Confidence 9999999999988776543
No 162
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=2.3e-22 Score=141.80 Aligned_cols=156 Identities=18% Similarity=0.139 Sum_probs=104.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc--------cchhhhccC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR--------TLTSSYYRG 85 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------~~~~~~~~~ 85 (211)
..+|+++|++|+|||||++++.+.......+...+...............+.+||+||..... ......+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999987653333333333332233333345678999999964322 123445788
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-CCeEEEeeccCCCc
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-GSLFLECSAKTREN 164 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~g 164 (211)
+|++++|+|++++.. .....+...+.. .+.|+++|+||+|+........+....+.... ..+++++|++++.|
T Consensus 83 ~d~i~~v~d~~~~~~--~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 83 VDLVLFVVDASEPIG--EGDEFILELLKK----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred CCEEEEEEECCCccC--chHHHHHHHHHH----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 999999999998721 222213333332 26899999999998643322223333333334 25799999999999
Q ss_pred HHHHHHHHHHH
Q 028300 165 VEQCFEQLALK 175 (211)
Q Consensus 165 v~~l~~~i~~~ 175 (211)
+++++++|.+.
T Consensus 157 ~~~l~~~l~~~ 167 (168)
T cd04163 157 VDELLEEIVKY 167 (168)
T ss_pred hHHHHHHHHhh
Confidence 99999998764
No 163
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=2.7e-22 Score=142.43 Aligned_cols=156 Identities=24% Similarity=0.172 Sum_probs=102.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc-----------chhhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT-----------LTSSY 82 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~~~~ 82 (211)
+++|+++|.+|+|||||++++.+..........+++.......+...+..+.+||+||...... .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 5799999999999999999999876432222333333222222222334578999999643210 01234
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-HHc----CCeEEEe
Q 028300 83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-KEH----GSLFLEC 157 (211)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-~~~----~~~~~~~ 157 (211)
+..+|++++|+|++++.+..... +..... ..+.|+++++||+|+.+............. ..+ ..+++++
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLR--IAGLIL----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI 155 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHH--HHHHHH----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence 67899999999999886654432 222222 246899999999998665322222222222 222 3679999
Q ss_pred eccCCCcHHHHHHHHHHH
Q 028300 158 SAKTRENVEQCFEQLALK 175 (211)
Q Consensus 158 Sa~~~~gv~~l~~~i~~~ 175 (211)
||+++.|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 164
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=2.8e-22 Score=144.49 Aligned_cols=155 Identities=20% Similarity=0.151 Sum_probs=108.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCc---------------cceeeEEEEEEECCEEEEEEEEeCCChhhhccchh
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPT---------------IGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTS 80 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (211)
+|+++|.+|+|||||+++|.+......... .+.+..............+.|||+||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 589999999999999999998876332211 12222222223333457899999999988888888
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC--HHHHHHHHHH---------
Q 028300 81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS--REEGIALAKE--------- 149 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~--~~~~~~~~~~--------- 149 (211)
..++.+|++++|+|+++..+..... +...+. ..+.|+++++||+|+..+.... ..........
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~----~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTRE--HLRIAR----EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE 154 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHH--HHHHHH----HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence 8899999999999998765433222 222222 2589999999999986532221 2222333322
Q ss_pred -----cCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300 150 -----HGSLFLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 150 -----~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
...+++++||+++.|+++++.++.+.+
T Consensus 155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 246799999999999999999998875
No 165
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.89 E-value=1.9e-22 Score=134.20 Aligned_cols=178 Identities=25% Similarity=0.477 Sum_probs=149.7
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG 85 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (211)
++.+.--+++|.++|++..|||||+-.+.++++ ..+..+.|..+..+.+.+.+.++.+.+||++|+.++..+.+.....
T Consensus 13 ~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~d 92 (205)
T KOG1673|consen 13 PAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKD 92 (205)
T ss_pred cccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecC
Confidence 445666789999999999999999999999998 7788899999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC--cccC---HHHHHHHHHHcCCeEEEeecc
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE--RVVS---REEGIALAKEHGSLFLECSAK 160 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~--~~v~---~~~~~~~~~~~~~~~~~~Sa~ 160 (211)
+-++++.||++.+..+..+.. |.+..+.. -..-+| ++|+||.|+--. .+.. ...++.+++..+++.+.+|+.
T Consensus 93 svaIlFmFDLt~r~TLnSi~~-WY~QAr~~-NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts 169 (205)
T KOG1673|consen 93 SVAILFMFDLTRRSTLNSIKE-WYRQARGL-NKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTS 169 (205)
T ss_pred cEEEEEEEecCchHHHHHHHH-HHHHHhcc-CCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecc
Confidence 999999999999999999999 77766544 233456 678999996211 1111 233567777889999999999
Q ss_pred CCCcHHHHHHHHHHHHHhccchhcccc
Q 028300 161 TRENVEQCFEQLALKIMEVPSLLEEGS 187 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~~~~~~~~~~~~ 187 (211)
.+.+++.+|.-++.++.+.....++..
T Consensus 170 ~sINv~KIFK~vlAklFnL~~ti~~~~ 196 (205)
T KOG1673|consen 170 HSINVQKIFKIVLAKLFNLPWTIPEIL 196 (205)
T ss_pred ccccHHHHHHHHHHHHhCCceeccccc
Confidence 999999999999999999887766554
No 166
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=2.8e-22 Score=160.82 Aligned_cols=164 Identities=20% Similarity=0.189 Sum_probs=112.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh----ccc---hhhhccCCc
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF----RTL---TSSYYRGAQ 87 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~---~~~~~~~~d 87 (211)
..|+|+|.||||||||+++|.+.... ....++++.......+......+.|||+||..+. ..+ ....+..+|
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk-IadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK-IADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc-ccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 47999999999999999999987542 1233444444433334334468999999995321 111 222457789
Q ss_pred EEEEEEECCCh----hhHHHHHHHHHHHhhhhc----------cCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe
Q 028300 88 GIILVYDVTRR----ETFTNLSDVWAKEVDLYS----------TNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL 153 (211)
Q Consensus 88 ~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~----------~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~ 153 (211)
++|+|+|+++. +.+.++.. +..++..+. .....|++||+||+|+.+..... +.........+++
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~-i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g~~ 316 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDA-LEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARGWP 316 (500)
T ss_pred EEEEEECCcccccccCchhhHHH-HHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcCCe
Confidence 99999999853 34445444 555554442 23478999999999986543321 2223333455789
Q ss_pred EEEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300 154 FLECSAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 154 ~~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
++++||+++.|+++++.+|.+.+...+.
T Consensus 317 Vf~ISA~tgeGLdEL~~~L~ell~~~r~ 344 (500)
T PRK12296 317 VFEVSAASREGLRELSFALAELVEEARA 344 (500)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999998877654
No 167
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.89 E-value=1.1e-21 Score=142.41 Aligned_cols=161 Identities=21% Similarity=0.220 Sum_probs=109.8
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCCh----------hhhcc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ----------ERFRT 77 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~ 77 (211)
...+..++|+++|.+|+|||||++++++..+ ..+.++.+.+.....+.. +..+.|||+||. ..+..
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~ 95 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQK 95 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence 3445778999999999999999999998864 566666666555443332 367999999994 23333
Q ss_pred chhhhccC---CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH--HHHHHHHHHcCC
Q 028300 78 LTSSYYRG---AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR--EEGIALAKEHGS 152 (211)
Q Consensus 78 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--~~~~~~~~~~~~ 152 (211)
+...+++. .+++++++|.+++....... +...+. ..++|+++++||+|+........ ............
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--i~~~l~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~ 169 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELDLQ--MIEWLK----EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDD 169 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHHHH--HHHHHH----HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 34444443 46788899988754433221 222222 24789999999999865433221 223333333357
Q ss_pred eEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300 153 LFLECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 153 ~~~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
+++++|++++.|++++++.|.+.+.+
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 89999999999999999999877654
No 168
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.89 E-value=1.7e-21 Score=129.35 Aligned_cols=170 Identities=26% Similarity=0.358 Sum_probs=140.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC---CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh-ccchhhhccCC
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV---DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF-RTLTSSYYRGA 86 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~~~~~~~~~~ 86 (211)
-.+.-||+++|..++|||+++.+++.+.. .+..+|....+....-+-.+..-.+.|+||.|...+ ..+-++++.-+
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 34567999999999999999999998776 445555555444333333444567899999997766 56678899999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 166 (211)
|++++|||..+++||..+.. +...+..+.....+|+++++||.|+.++.++..+.+..++....+..+++++.+...+-
T Consensus 86 DafVLVYs~~d~eSf~rv~l-lKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ 164 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVEL-LKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLY 164 (198)
T ss_pred ceEEEEecCCCHHHHHHHHH-HHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhh
Confidence 99999999999999999877 77777776667789999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 028300 167 QCFEQLALKIMEVPS 181 (211)
Q Consensus 167 ~l~~~i~~~~~~~~~ 181 (211)
+-|..+..++...+.
T Consensus 165 epf~~l~~rl~~pqs 179 (198)
T KOG3883|consen 165 EPFTYLASRLHQPQS 179 (198)
T ss_pred hHHHHHHHhccCCcc
Confidence 999998887765543
No 169
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.89 E-value=1.3e-22 Score=132.94 Aligned_cols=160 Identities=24% Similarity=0.358 Sum_probs=129.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
++++||+++|..++|||||++.|.+.+.....|+.|.......+ ..++.+++||.+|+...+..|..++.+.|++||
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~---~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEY---DGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEee---cCcEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 78999999999999999999999999888888999987775444 357899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHH---HHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREE---GIALAKEHGSLFLECSAKTRENVEQC 168 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l 168 (211)
|+|.+|...|+++...+.+++..- ....+|+.|.+||.|+.....+.... .....+..-+.+.++|+..++|+.+-
T Consensus 92 VIDS~D~krfeE~~~el~ELleee-Kl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg 170 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEE-KLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDG 170 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhh-hhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCc
Confidence 999999988998877666666554 56789999999999986443322111 11112223456899999999999988
Q ss_pred HHHHHHH
Q 028300 169 FEQLALK 175 (211)
Q Consensus 169 ~~~i~~~ 175 (211)
.+|+...
T Consensus 171 ~~wv~sn 177 (185)
T KOG0074|consen 171 SDWVQSN 177 (185)
T ss_pred chhhhcC
Confidence 8887653
No 170
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=5.1e-22 Score=139.04 Aligned_cols=141 Identities=18% Similarity=0.181 Sum_probs=98.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh-----hhccchhhhccCCcEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE-----RFRTLTSSYYRGAQGII 90 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~-----~~~~~~~~~~~~~d~~i 90 (211)
+|+++|.+|+|||||++++.+.. .....+.+ ..+... .+||+||.. .+..+ ...+.++|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~-~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHAL-ITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccCccceE-------EEECCC----CcccCCccccCCHHHHHHH-HHHHhcCCEEE
Confidence 79999999999999999987543 21111211 122222 269999962 22222 23478999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC--eEEEeeccCCCcHHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS--LFLECSAKTRENVEQC 168 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~--~~~~~Sa~~~~gv~~l 168 (211)
+|+|+++.+++... |...+ ..++|+++++||+|+.+. ..+...++....++ |++++||+++.|++++
T Consensus 70 ~v~d~~~~~s~~~~---~~~~~-----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l 138 (158)
T PRK15467 70 YVHGANDPESRLPA---GLLDI-----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQL 138 (158)
T ss_pred EEEeCCCcccccCH---HHHhc-----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHH
Confidence 99999988765322 32222 236799999999998542 34555666666664 8999999999999999
Q ss_pred HHHHHHHHHhcc
Q 028300 169 FEQLALKIMEVP 180 (211)
Q Consensus 169 ~~~i~~~~~~~~ 180 (211)
|+++.+.+.+..
T Consensus 139 ~~~l~~~~~~~~ 150 (158)
T PRK15467 139 VDYLASLTKQEE 150 (158)
T ss_pred HHHHHHhchhhh
Confidence 999888765443
No 171
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=9.4e-22 Score=145.45 Aligned_cols=169 Identities=21% Similarity=0.155 Sum_probs=128.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh--------ccchhhhc
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF--------RTLTSSYY 83 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--------~~~~~~~~ 83 (211)
.+.--|+++|.||+|||||+|++.+......++-+.+++..+..-......++.|+||||...- .......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 4556799999999999999999999999888888888888877777667889999999994322 22345567
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC-CeEEEeeccCC
Q 028300 84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG-SLFLECSAKTR 162 (211)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~ 162 (211)
..+|+++||+|+++...- -.....+.++. .+.|+++++||+|..............+..... ..++++||+++
T Consensus 84 ~dvDlilfvvd~~~~~~~--~d~~il~~lk~----~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 84 KDVDLILFVVDADEGWGP--GDEFILEQLKK----TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred ccCcEEEEEEeccccCCc--cHHHHHHHHhh----cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 889999999999984332 22213344432 478999999999986665422222222222333 26999999999
Q ss_pred CcHHHHHHHHHHHHHhccchhccc
Q 028300 163 ENVEQCFEQLALKIMEVPSLLEEG 186 (211)
Q Consensus 163 ~gv~~l~~~i~~~~~~~~~~~~~~ 186 (211)
.|++.+.+.+.+.+.+....+++.
T Consensus 158 ~n~~~L~~~i~~~Lpeg~~~yp~d 181 (298)
T COG1159 158 DNVDTLLEIIKEYLPEGPWYYPED 181 (298)
T ss_pred CCHHHHHHHHHHhCCCCCCcCChh
Confidence 999999999999999998888766
No 172
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=1.4e-21 Score=161.63 Aligned_cols=156 Identities=20% Similarity=0.248 Sum_probs=114.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCC-------C-CCCCC------ccceeeEEEEEEE-----CCEEEEEEEEeCCChhhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSS-------V-DDLSP------TIGVDFKIKLLTV-----AGKRLKLTIWDTAGQERF 75 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~-------~-~~~~~------~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~~~ 75 (211)
-+|+++|++++|||||+++|+... + ..+.. +.|.++....+.+ ++..+.+.||||||+.+|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 489999999999999999998652 2 12222 2355555433333 455689999999999999
Q ss_pred ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC---
Q 028300 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS--- 152 (211)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~--- 152 (211)
...+...++.+|++|+|+|+++..+...... |.... ..++|+++|+||+|+.... ......++...++.
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~-~~~~~-----~~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~ 155 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLAN-VYLAL-----ENDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDAS 155 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHH-HHHHH-----HcCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcc
Confidence 8888999999999999999998665555544 43322 2368999999999985432 11222334444554
Q ss_pred eEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300 153 LFLECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 153 ~~~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
.++++||++|.|++++|++|.+.+..
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 48999999999999999999987654
No 173
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=7.7e-22 Score=143.73 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCccceeeEEEEEEEC-----------------------------C----
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDD--LSPTIGVDFKIKLLTVA-----------------------------G---- 59 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~~~~~~~~~~-----------------------------~---- 59 (211)
++|+++|+.|+|||||+..+.....+. .....+.+.......+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 589999999999999999997552111 00111111111000000 0
Q ss_pred EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC
Q 028300 60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS 139 (211)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~ 139 (211)
....+.|||+||+..+...+...+..+|++++|+|++++.........+ ..+.. ....|+++|+||+|+.......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~~~~~---~~~~~iiivvNK~Dl~~~~~~~ 156 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-AALEI---MGLKHIIIVQNKIDLVKEEQAL 156 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-HHHHH---cCCCcEEEEEEchhccCHHHHH
Confidence 1267999999999988777778888999999999998731111111111 11121 1235789999999986432211
Q ss_pred --HHHHHHHHHH---cCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300 140 --REEGIALAKE---HGSLFLECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 140 --~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
.+....+... .+++++++||+++.|++++|++|.+.+.+
T Consensus 157 ~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 157 ENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 1222333322 25689999999999999999999876544
No 174
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=1.2e-21 Score=154.47 Aligned_cols=168 Identities=18% Similarity=0.126 Sum_probs=116.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCE-EEEEEEEeCCChhhhc-------cchhhhccCCc
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQERFR-------TLTSSYYRGAQ 87 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~-------~~~~~~~~~~d 87 (211)
.|+|+|.||||||||+|+|++... ...+.++++.......+... ...+.|+|+||..+-. ......+..+|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 799999999999999999997664 33444455544444433222 3468999999964311 11223477899
Q ss_pred EEEEEEECC---ChhhHHHHHHHHHHHhhhhc-cCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC--CeEEEeeccC
Q 028300 88 GIILVYDVT---RRETFTNLSDVWAKEVDLYS-TNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG--SLFLECSAKT 161 (211)
Q Consensus 88 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~-~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~ 161 (211)
++++|+|++ +.+.++.... |+..+..+. ...+.|+++|+||+|+.....+ .+....+....+ .+++.+||++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~-l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARI-IINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred EEEEEeccCcccccChHHHHHH-HHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence 999999988 4455666655 666665542 1246899999999998654332 223333434433 4699999999
Q ss_pred CCcHHHHHHHHHHHHHhccchhccc
Q 028300 162 RENVEQCFEQLALKIMEVPSLLEEG 186 (211)
Q Consensus 162 ~~gv~~l~~~i~~~~~~~~~~~~~~ 186 (211)
+.|+++++++|.+.+.+....++..
T Consensus 318 g~GIdeLl~~I~~~L~~~~~~~~~~ 342 (390)
T PRK12298 318 GLGVKELCWDLMTFIEENPREEAEE 342 (390)
T ss_pred CcCHHHHHHHHHHHhhhCcccCCcc
Confidence 9999999999999998876665543
No 175
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.88 E-value=1.2e-21 Score=141.67 Aligned_cols=158 Identities=18% Similarity=0.098 Sum_probs=101.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC----CCCCC------CCccceeeEEEEEE----------ECCEEEEEEEEeCCChhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS----SVDDL------SPTIGVDFKIKLLT----------VAGKRLKLTIWDTAGQER 74 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~----~~~~~------~~~~~~~~~~~~~~----------~~~~~~~~~l~D~~g~~~ 74 (211)
++|+++|++++|||||+++|+.. .++.. ..+.........+. .......+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 11111 12222222222222 112367899999999876
Q ss_pred hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CHHHHHHHHH----
Q 028300 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SREEGIALAK---- 148 (211)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~~~~~~~~~---- 148 (211)
+..........+|++++|+|+++......... +. ... ..+.|+++++||+|+...... ..++......
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~ 154 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGE----ILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLE 154 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHH----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHH
Confidence 54334445677899999999987443333222 21 111 126799999999998643221 1122222111
Q ss_pred ---HcCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300 149 ---EHGSLFLECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 149 ---~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
..+++++++||+++.|++++++++.+++..
T Consensus 155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred hcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 135789999999999999999999887643
No 176
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.88 E-value=5.1e-21 Score=139.28 Aligned_cols=120 Identities=18% Similarity=0.304 Sum_probs=89.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC-cEEEEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA-QGIILVYD 94 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~-d~~i~v~d 94 (211)
+|+++|++|||||||+++|....+....++..................+.+||+||+..++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999987754444333222221221123457799999999999988888889998 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHhhhhc-cCCCccEEEEeecCCCCCC
Q 028300 95 VTRR-ETFTNLSDVWAKEVDLYS-TNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 95 ~~~~-~s~~~~~~~~~~~~~~~~-~~~~~p~viv~nK~Dl~~~ 135 (211)
+++. .++..+..++...+.... ...++|+++++||+|+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9997 677777764555443321 2368999999999998543
No 177
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.88 E-value=1.8e-21 Score=139.23 Aligned_cols=150 Identities=19% Similarity=0.226 Sum_probs=102.4
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChh----------hhc
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE----------RFR 76 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~ 76 (211)
..+....++|+++|.+|+|||||++++++..+ ..+.++.+.+.....+..+. .+.+||+||.. .+.
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHH
Confidence 34557889999999999999999999998864 55566666666554444432 68999999942 233
Q ss_pred cchhhhcc---CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CHHHHHHHHHHcC
Q 028300 77 TLTSSYYR---GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SREEGIALAKEHG 151 (211)
Q Consensus 77 ~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~~~~~~~~~~~~ 151 (211)
.+...+++ .+|++++|+|+++..+..+.. +...+. ..++|+++++||+|+..+.+. ..++.+......+
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~----~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLE--MLEWLR----ERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 33334444 358999999998754444432 233333 247899999999998644322 2233344444433
Q ss_pred --CeEEEeeccCCCcHH
Q 028300 152 --SLFLECSAKTRENVE 166 (211)
Q Consensus 152 --~~~~~~Sa~~~~gv~ 166 (211)
++++++||++++|++
T Consensus 163 ~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 163 DDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCCceEEEECCCCCCCC
Confidence 479999999999973
No 178
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=1.3e-21 Score=155.89 Aligned_cols=157 Identities=20% Similarity=0.151 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh--ccch------hhhccC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF--RTLT------SSYYRG 85 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~------~~~~~~ 85 (211)
.+|+++|.+|+|||||+|+|.+..+. ...+....+.....+.+.+ ...+.+|||+|.... ...+ ...+..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~-~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD-VGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC-CCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999987652 1112222222223333433 226789999997321 1112 234688
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe-EEEeeccCCCc
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTREN 164 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~g 164 (211)
+|++++|+|++++.+.+.+.. |...+... ...++|+++|+||+|+.+... . ... ....+.+ ++.+||++|.|
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~-v~~iL~el-~~~~~pvIiV~NKiDL~~~~~-~--~~~--~~~~~~~~~v~ISAktG~G 349 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEA-VNTVLEEI-DAHEIPTLLVMNKIDMLDDFE-P--RID--RDEENKPIRVWLSAQTGAG 349 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHH-HHHHHHHh-ccCCCCEEEEEEcccCCCchh-H--HHH--HHhcCCCceEEEeCCCCCC
Confidence 999999999999987777654 55555443 234789999999999854311 1 111 1123445 58899999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028300 165 VEQCFEQLALKIMEV 179 (211)
Q Consensus 165 v~~l~~~i~~~~~~~ 179 (211)
+++++++|.+.+...
T Consensus 350 IdeL~e~I~~~l~~~ 364 (426)
T PRK11058 350 IPLLFQALTERLSGE 364 (426)
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999988543
No 179
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=1.5e-21 Score=157.50 Aligned_cols=152 Identities=22% Similarity=0.180 Sum_probs=109.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCCh--------hhhccchhhhccCCc
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ--------ERFRTLTSSYYRGAQ 87 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~--------~~~~~~~~~~~~~~d 87 (211)
+|+++|.+|||||||+|+|.+.........++++...........+..+.+|||||. ..+.......++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 589999999999999999998776555555666554444333334557999999995 333444566788999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCcHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRENVE 166 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~ 166 (211)
++++|+|+.+..+..+.. +...++. .++|+++|+||+|+...... ..+ ...++. +++++||.+|.|++
T Consensus 81 ~vl~vvD~~~~~~~~d~~--i~~~l~~----~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEE--IAKWLRK----SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred EEEEEEeCCCCCCHHHHH--HHHHHHH----hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCChH
Confidence 999999998754333221 3333332 37899999999998654321 112 234565 69999999999999
Q ss_pred HHHHHHHHHHHh
Q 028300 167 QCFEQLALKIME 178 (211)
Q Consensus 167 ~l~~~i~~~~~~ 178 (211)
++++++.+.+.+
T Consensus 150 ~ll~~i~~~l~~ 161 (429)
T TIGR03594 150 DLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHhcCc
Confidence 999999887754
No 180
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.3e-22 Score=133.35 Aligned_cols=163 Identities=23% Similarity=0.323 Sum_probs=132.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
+++.+|.++|.-|+|||++..++-.++.....|+++.....+. ....++++||++|+-..+..|+-++.+.|++||
T Consensus 16 e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~----yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 16 EREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVP----YKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred ccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccc----cccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 4889999999999999999999999998888999998887444 367889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc---ccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER---VVSREEGIALAKEHGSLFLECSAKTRENVEQC 168 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~---~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 168 (211)
|+|.+|.+...-....+..++.+- +..+..+++++||.|....- ++......+..+..-+.+|++||.+++|++..
T Consensus 92 VVDssd~dris~a~~el~~mL~E~-eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEE-ELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccH-hhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence 999999888777777677777654 44568889999999974321 11111122222334467999999999999999
Q ss_pred HHHHHHHHHhc
Q 028300 169 FEQLALKIMEV 179 (211)
Q Consensus 169 ~~~i~~~~~~~ 179 (211)
++|+.+-+.+.
T Consensus 171 ~DWL~~~l~~~ 181 (182)
T KOG0072|consen 171 MDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHhcc
Confidence 99999887654
No 181
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.87 E-value=6.8e-21 Score=156.95 Aligned_cols=152 Identities=18% Similarity=0.252 Sum_probs=106.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDD-LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
-..++.+|+++|++++|||||+++|.+..+.. ..+....+.....+.+.+. ..+.||||||+..|..++...+..+|+
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDi 161 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDI 161 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCE
Confidence 34577899999999999999999999877632 2222222222222333222 278999999999999888888999999
Q ss_pred EEEEEECCCh---hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-------cC--CeEEE
Q 028300 89 IILVYDVTRR---ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-------HG--SLFLE 156 (211)
Q Consensus 89 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-------~~--~~~~~ 156 (211)
+++|+|+++. ++.+.+ ... ...++|+++++||+|+... ..+........ ++ .++++
T Consensus 162 aILVVda~dgv~~qT~e~i-----~~~----~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~ 229 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEAI-----SHA----KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVP 229 (587)
T ss_pred EEEEEECCCCCCHhHHHHH-----HHH----HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEE
Confidence 9999999873 333222 111 2357899999999998543 22223222222 22 47999
Q ss_pred eeccCCCcHHHHHHHHHH
Q 028300 157 CSAKTRENVEQCFEQLAL 174 (211)
Q Consensus 157 ~Sa~~~~gv~~l~~~i~~ 174 (211)
+||++|.|++++|++|..
T Consensus 230 iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 230 VSALTGDGIDELLDMILL 247 (587)
T ss_pred EECCCCCChHHHHHhhhh
Confidence 999999999999999864
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=3.1e-21 Score=155.93 Aligned_cols=161 Identities=26% Similarity=0.202 Sum_probs=113.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc----------c-hh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT----------L-TS 80 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~-~~ 80 (211)
...++|+++|.+|+|||||+++|++.......+..+++.......+...+..+.+|||||...... . ..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 457999999999999999999999877544555667766665554444456788999999532111 1 12
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHH-HHHHH----cCCeEE
Q 028300 81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGI-ALAKE----HGSLFL 155 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~-~~~~~----~~~~~~ 155 (211)
..++.+|++|+|+|+++..+..+.. +...+. ..++|+++|+||+|+.+... ..+.. .+... ..++++
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~--i~~~~~----~~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~ 322 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR--IAGLAL----EAGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIV 322 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEE
Confidence 3678899999999999876655543 333332 24789999999999863321 11111 11111 247899
Q ss_pred EeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 156 ECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 156 ~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
++||+++.|++++|+.+.+.+....
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999988776554
No 183
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=2.6e-21 Score=156.39 Aligned_cols=150 Identities=21% Similarity=0.155 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh--------hccchhhhccCC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER--------FRTLTSSYYRGA 86 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~~~~ 86 (211)
.+|+++|.+|||||||+++|.+.........++++...........+..+.+|||||... +.......+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 589999999999999999999877543344445443333222222337899999999765 222345567899
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe-EEEeeccCCCcH
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENV 165 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gv 165 (211)
|++|+|+|+++..+..+.. +...+.. .++|+++|+||+|+.... ....++ ..+++. ++++||.++.|+
T Consensus 82 d~il~vvd~~~~~~~~~~~--~~~~l~~----~~~piilv~NK~D~~~~~----~~~~~~-~~lg~~~~~~iSa~~g~gv 150 (435)
T PRK00093 82 DVILFVVDGRAGLTPADEE--IAKILRK----SNKPVILVVNKVDGPDEE----ADAYEF-YSLGLGEPYPISAEHGRGI 150 (435)
T ss_pred CEEEEEEECCCCCCHHHHH--HHHHHHH----cCCcEEEEEECccCccch----hhHHHH-HhcCCCCCEEEEeeCCCCH
Confidence 9999999998754332221 2222222 278999999999974321 122222 345654 899999999999
Q ss_pred HHHHHHHHHH
Q 028300 166 EQCFEQLALK 175 (211)
Q Consensus 166 ~~l~~~i~~~ 175 (211)
++++++|.+.
T Consensus 151 ~~l~~~I~~~ 160 (435)
T PRK00093 151 GDLLDAILEE 160 (435)
T ss_pred HHHHHHHHhh
Confidence 9999999883
No 184
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.87 E-value=6.2e-21 Score=159.50 Aligned_cols=154 Identities=17% Similarity=0.219 Sum_probs=110.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCCC-CC--CccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDD-LS--PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
..+..+|+|+|++++|||||+++|....+.. .. .+.........+...+....+.||||||+..|..++...+..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 4677899999999999999999999876632 11 12112222223333345688999999999999998988999999
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHH-------HHHcC--CeEE
Q 028300 88 GIILVYDVTRR---ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIAL-------AKEHG--SLFL 155 (211)
Q Consensus 88 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~-------~~~~~--~~~~ 155 (211)
++|+|+|+++. ++++.+. .+ ...++|+++++||+|+.... ....... ...++ ++++
T Consensus 321 iaILVVDA~dGv~~QT~E~I~-----~~----k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv 388 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAIN-----YI----QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMI 388 (742)
T ss_pred EEEEEEECcCCCChhhHHHHH-----HH----HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEE
Confidence 99999999874 3333322 11 23578999999999986532 1222111 12233 6899
Q ss_pred EeeccCCCcHHHHHHHHHHHH
Q 028300 156 ECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 156 ~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
++||++|.|+++++++|....
T Consensus 389 ~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 389 PISASQGTNIDKLLETILLLA 409 (742)
T ss_pred EEECCCCCCHHHHHHhhhhhh
Confidence 999999999999999987753
No 185
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=2.8e-21 Score=139.25 Aligned_cols=158 Identities=23% Similarity=0.200 Sum_probs=105.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC-----------------CccceeeEEEEEEEC--CEEEEEEEEeCCChh
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLS-----------------PTIGVDFKIKLLTVA--GKRLKLTIWDTAGQE 73 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~l~D~~g~~ 73 (211)
+.++|+++|+.++|||||+++|+........ ...+.+.......+. .....+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4579999999999999999999854421100 011222222222332 456789999999999
Q ss_pred hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc-CHHHHH-HHHHHc-
Q 028300 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-SREEGI-ALAKEH- 150 (211)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-~~~~~~-~~~~~~- 150 (211)
+|.......+..+|++|+|+|+.+.-..... . ....+. ..++|+++|+||+|+...+.. ..++.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~-~l~~~~----~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE-E-HLKILR----ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-H-HHHHHH----HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeecccccccccc-c-cccccc----ccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence 9888788889999999999999875332222 1 233333 348889999999998621110 011112 222222
Q ss_pred -----CCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300 151 -----GSLFLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 151 -----~~~~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
.++++.+||.+|.|++++++.|.+.+
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 25799999999999999999998765
No 186
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=7.6e-21 Score=161.14 Aligned_cols=159 Identities=21% Similarity=0.153 Sum_probs=109.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEE--EEECCEEEEEEEEeCCChhh----------hccc-h
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKL--LTVAGKRLKLTIWDTAGQER----------FRTL-T 79 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~D~~g~~~----------~~~~-~ 79 (211)
..++|+++|.+|||||||+|+|++.......+..+++..... +.+++ ..+.+|||||..+ +..+ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG--EDWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC--CEEEEEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999998875333334444444333 33444 3567999999531 2211 1
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-HH----cCCeE
Q 028300 80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-KE----HGSLF 154 (211)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-~~----~~~~~ 154 (211)
...++.+|++++|+|+++..+..+... + ..+. ..++|+++|+||+|+.+... .+...... .. ..+++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i-~-~~~~----~~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~i 598 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKV-M-SMAV----DAGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARR 598 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHH-H-HHHH----HcCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCE
Confidence 234788999999999999877776643 3 2222 24789999999999965322 11111111 11 13468
Q ss_pred EEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300 155 LECSAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 155 ~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
+.+||++|.|++++|+.+.+.+.+...
T Consensus 599 i~iSAktg~gv~~L~~~i~~~~~~~~~ 625 (712)
T PRK09518 599 VNLSAKTGWHTNRLAPAMQEALESWDQ 625 (712)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998876544
No 187
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.86 E-value=7.6e-21 Score=160.24 Aligned_cols=153 Identities=22% Similarity=0.297 Sum_probs=108.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
...++..|+|+|+.++|||||+++|....+... ...+.+.....+.+...+..+.||||||+..|..++...+..+|++
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~-e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG-EAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccc-ccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 356888999999999999999999987766321 1223332222222222346789999999999998888889999999
Q ss_pred EEEEECCCh---hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHH-------HHHHcC--CeEEEe
Q 028300 90 ILVYDVTRR---ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIA-------LAKEHG--SLFLEC 157 (211)
Q Consensus 90 i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~-------~~~~~~--~~~~~~ 157 (211)
|+|||+++. ++.+.+. .. ...++|+++++||+|+.... ...... +...++ ++++++
T Consensus 365 ILVVdAddGv~~qT~e~i~-----~a----~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpv 432 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAIN-----HA----KAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPV 432 (787)
T ss_pred EEEEECCCCCCHhHHHHHH-----HH----HhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEE
Confidence 999999873 3333221 11 24579999999999985432 111111 122233 689999
Q ss_pred eccCCCcHHHHHHHHHHH
Q 028300 158 SAKTRENVEQCFEQLALK 175 (211)
Q Consensus 158 Sa~~~~gv~~l~~~i~~~ 175 (211)
||++|.|++++|++|...
T Consensus 433 SAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 433 SAKTGEGIDELLEAILLQ 450 (787)
T ss_pred eCCCCCCchHHHHhhhhh
Confidence 999999999999998753
No 188
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=1.4e-20 Score=155.69 Aligned_cols=155 Identities=19% Similarity=0.236 Sum_probs=110.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC----CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV----DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
+.|+++|++++|||||+++|.+... .+..+....+.....+...+ ..+.+||+||++.|.......+.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 4799999999999999999996432 12222222233222333333 78999999999999877788889999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccC--HHHHHHHHHHc----CCeEEEeecc
Q 028300 91 LVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVS--REEGIALAKEH----GSLFLECSAK 160 (211)
Q Consensus 91 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~--~~~~~~~~~~~----~~~~~~~Sa~ 160 (211)
+|+|+++ +++.+.+. .+. ..++| +++|+||+|+.+...+. .++...+.... +++++++||+
T Consensus 79 LVVDa~~G~~~qT~ehl~-----il~----~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA-----VLD----LLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred EEEECCCCCcHHHHHHHH-----HHH----HcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 9999998 44444432 122 23677 99999999996544321 23344444443 5789999999
Q ss_pred CCCcHHHHHHHHHHHHHhcc
Q 028300 161 TRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~~~~~ 180 (211)
+|.|+++++++|.+.+....
T Consensus 150 tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 150 TGQGIGELKKELKNLLESLD 169 (581)
T ss_pred CCCCchhHHHHHHHHHHhCC
Confidence 99999999999887665543
No 189
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.86 E-value=6.3e-21 Score=133.33 Aligned_cols=151 Identities=23% Similarity=0.169 Sum_probs=104.1
Q ss_pred EEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCE-EEEEEEEeCCChhhhcc-------chhhhccCCcEEE
Q 028300 19 LIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQERFRT-------LTSSYYRGAQGII 90 (211)
Q Consensus 19 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-------~~~~~~~~~d~~i 90 (211)
++|++|+|||||++++.+..........+.+........... ...+.+||+||...... .....++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 589999999999999998766433333333333333222221 56799999999765432 3445788999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHH---HHHHHHHcCCeEEEeeccCCCcHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREE---GIALAKEHGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~ 167 (211)
+|+|+++........ +.... ...+.|+++|+||+|+.......... ........+++++++|+.++.|+++
T Consensus 81 ~v~~~~~~~~~~~~~--~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 81 FVVDADLRADEEEEK--LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEeCCCCCCHHHHH--HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence 999999987665554 22222 24589999999999986554332221 1122223467899999999999999
Q ss_pred HHHHHHHH
Q 028300 168 CFEQLALK 175 (211)
Q Consensus 168 l~~~i~~~ 175 (211)
+++++.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99998864
No 190
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.86 E-value=2.1e-20 Score=158.25 Aligned_cols=154 Identities=17% Similarity=0.136 Sum_probs=117.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc----------hhhh
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL----------TSSY 82 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~~ 82 (211)
+.++|+++|+||+|||||+|++.+... .....+|+++......+...+..+.+||+||...+... ...+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 357899999999999999999997655 44556888888777777777788999999997665421 1122
Q ss_pred --ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300 83 --YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK 160 (211)
Q Consensus 83 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 160 (211)
...+|++++|+|+++.+.. .. +...+.. .++|+++++||+|+.+.+.+. .+...+.+.++++++++|+.
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~-l~~ql~e----~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~ 151 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LY-LTLQLLE----LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVST 151 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HH-HHHHHHH----cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEee
Confidence 2478999999999985432 22 3333332 379999999999986555443 34566777889999999999
Q ss_pred CCCcHHHHHHHHHHHH
Q 028300 161 TRENVEQCFEQLALKI 176 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~ 176 (211)
++.|++++++.+.+..
T Consensus 152 ~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 152 RGRGIEALKLAIDRHQ 167 (772)
T ss_pred cCCCHHHHHHHHHHhh
Confidence 9999999999988765
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=1.3e-20 Score=159.72 Aligned_cols=156 Identities=16% Similarity=0.119 Sum_probs=111.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh--------hccchhhhc
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER--------FRTLTSSYY 83 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~ 83 (211)
....+|+++|.+|+|||||+|+|++.......+.+|++...........+..+.+|||||... +.......+
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 345689999999999999999999877655666777776655544443456789999999653 223345567
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCC
Q 028300 84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTR 162 (211)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 162 (211)
..+|++|+|+|+++.-. .....|...+. ..++|+++|+||+|+.... .....+. ..+. ..+++||++|
T Consensus 353 ~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr----~~~~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g 421 (712)
T PRK09518 353 SLADAVVFVVDGQVGLT--STDERIVRMLR----RAGKPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHG 421 (712)
T ss_pred HhCCEEEEEEECCCCCC--HHHHHHHHHHH----hcCCCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCC
Confidence 89999999999986322 22222545544 3589999999999985421 1112221 2232 3679999999
Q ss_pred CcHHHHHHHHHHHHHh
Q 028300 163 ENVEQCFEQLALKIME 178 (211)
Q Consensus 163 ~gv~~l~~~i~~~~~~ 178 (211)
.|+++++++|++.+.+
T Consensus 422 ~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 422 RGVGDLLDEALDSLKV 437 (712)
T ss_pred CCchHHHHHHHHhccc
Confidence 9999999999998755
No 192
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=2.1e-20 Score=145.64 Aligned_cols=165 Identities=23% Similarity=0.172 Sum_probs=127.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh----------hcc-chhh
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER----------FRT-LTSS 81 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~-~~~~ 81 (211)
..+||+++|.|++|||||+|++++.+-....+..|+++..+...++.....+.++||+|... |.. -...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 57999999999999999999999999888999999999999988887778899999999321 211 1234
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-----cCCeEEE
Q 028300 82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-----HGSLFLE 156 (211)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~ 156 (211)
.+..+|++++|+|++++.+-++.+ ....+ ...+.+++||+||.|+.+.+....++.+..... -.++++.
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~--ia~~i----~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLR--IAGLI----EEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHHHH--HHHHH----HHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 677899999999999986655544 22222 356899999999999976644444333322221 2468999
Q ss_pred eeccCCCcHHHHHHHHHHHHHhccchh
Q 028300 157 CSAKTRENVEQCFEQLALKIMEVPSLL 183 (211)
Q Consensus 157 ~Sa~~~~gv~~l~~~i~~~~~~~~~~~ 183 (211)
+||.++.+++.+|+.+.+.........
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~ri 357 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATRRI 357 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhcccc
Confidence 999999999999999998887775443
No 193
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=1.7e-20 Score=155.28 Aligned_cols=146 Identities=18% Similarity=0.189 Sum_probs=104.5
Q ss_pred cCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc------hhhhc--cCCcEEEEE
Q 028300 21 GDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL------TSSYY--RGAQGIILV 92 (211)
Q Consensus 21 G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~--~~~d~~i~v 92 (211)
|.+|+|||||+|++.+..+ ...+.++++.......+...+..+.+||+||+.++... ...++ +.+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 8999999999999998765 23344555555444333333456899999998776543 23332 478999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
+|.++.+. ... +...+. ..++|+++|+||+|+.+...+. .+...+.+.++++++++||+++.|++++++++
T Consensus 80 vDat~ler---~l~-l~~ql~----~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 80 VDASNLER---NLY-LTLQLL----ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred ecCCcchh---hHH-HHHHHH----hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 99987542 222 222222 2479999999999986555444 34566777889999999999999999999999
Q ss_pred HHHH
Q 028300 173 ALKI 176 (211)
Q Consensus 173 ~~~~ 176 (211)
.+..
T Consensus 151 ~~~~ 154 (591)
T TIGR00437 151 RKAI 154 (591)
T ss_pred HHHh
Confidence 8754
No 194
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.85 E-value=1.5e-20 Score=146.39 Aligned_cols=152 Identities=20% Similarity=0.112 Sum_probs=115.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc---------cchhhhccC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR---------TLTSSYYRG 85 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~~~~~ 85 (211)
..|+++|.||||||||+|+|.+.....+..++|+++..........+..+.++||+|.+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999998888999998887776666667779999999965322 224557789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCc
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTREN 164 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g 164 (211)
+|++|||+|....-+-.+ ..+...+. ..++|+++|+||+|.... +.....+..+|. .++.+||.+|.|
T Consensus 84 ADvilfvVD~~~Git~~D--~~ia~~Lr----~~~kpviLvvNK~D~~~~-----e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 84 ADVILFVVDGREGITPAD--EEIAKILR----RSKKPVILVVNKIDNLKA-----EELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHH----hcCCCEEEEEEcccCchh-----hhhHHHHHhcCCCCceEeehhhccC
Confidence 999999999887322222 11334443 347999999999996421 222222334554 599999999999
Q ss_pred HHHHHHHHHHHHH
Q 028300 165 VEQCFEQLALKIM 177 (211)
Q Consensus 165 v~~l~~~i~~~~~ 177 (211)
+.++++++++.+.
T Consensus 153 i~dLld~v~~~l~ 165 (444)
T COG1160 153 IGDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999874
No 195
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.85 E-value=2.6e-20 Score=145.48 Aligned_cols=159 Identities=20% Similarity=0.201 Sum_probs=124.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc--------hh
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL--------TS 80 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~ 80 (211)
..-..-++|+++|.||+|||||+|.|++.+-..+++.+|+++......++-.++.+.+.||+|..+-... ..
T Consensus 212 ~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~ 291 (454)
T COG0486 212 KILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAK 291 (454)
T ss_pred hhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHH
Confidence 3345678999999999999999999999999999999999999999988888899999999995443322 34
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300 81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK 160 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 160 (211)
..+.++|.+++|+|.+.+.+-.+...++ ....+.|+++|.||.|+..+...... ....+.+++.+|++
T Consensus 292 ~~i~~ADlvL~v~D~~~~~~~~d~~~~~-------~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~ 359 (454)
T COG0486 292 KAIEEADLVLFVLDASQPLDKEDLALIE-------LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAK 359 (454)
T ss_pred HHHHhCCEEEEEEeCCCCCchhhHHHHH-------hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEec
Confidence 5678999999999999963333333212 13568999999999999765432211 11234469999999
Q ss_pred CCCcHHHHHHHHHHHHHhc
Q 028300 161 TRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~~~~ 179 (211)
++.|++.+.+.|.+.+...
T Consensus 360 t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 360 TGEGLDALREAIKQLFGKG 378 (454)
T ss_pred CccCHHHHHHHHHHHHhhc
Confidence 9999999999998887776
No 196
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.85 E-value=2e-20 Score=150.49 Aligned_cols=156 Identities=19% Similarity=0.121 Sum_probs=105.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCC------------------------------CCCCccceeeEEEEEEECCE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVD------------------------------DLSPTIGVDFKIKLLTVAGK 60 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~ 60 (211)
....++|+++|++++|||||+++|+...-. ......|++.......+...
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 356799999999999999999999843211 01114566666666677777
Q ss_pred EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc---
Q 028300 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV--- 137 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~--- 137 (211)
...+.||||||+.+|.......+..+|++++|+|+++...+......+...+... ...|+++++||+|+.+...
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL---GINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc---CCCeEEEEEEccccccccHHHH
Confidence 8899999999998876555556789999999999987322211111122222221 2346999999999864221
Q ss_pred -cCHHHHHHHHHHcC-----CeEEEeeccCCCcHHHHH
Q 028300 138 -VSREEGIALAKEHG-----SLFLECSAKTRENVEQCF 169 (211)
Q Consensus 138 -v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~ 169 (211)
...++...+....+ ++++++||++|.|+++.+
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 11233444444444 579999999999998754
No 197
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.84 E-value=7.9e-20 Score=151.48 Aligned_cols=159 Identities=21% Similarity=0.228 Sum_probs=112.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCC--CC------CC------CCccceeeEEEEEEE-----CCEEEEEEEEeCCChh
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSS--VD------DL------SPTIGVDFKIKLLTV-----AGKRLKLTIWDTAGQE 73 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~--~~------~~------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~ 73 (211)
+--+|+++|+.++|||||+.+|+... .. .+ ..+.|.+.......+ ++..+.+.||||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 34589999999999999999998632 11 01 112344443332222 4557899999999999
Q ss_pred hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-
Q 028300 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS- 152 (211)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~- 152 (211)
+|...+...++.+|++|+|+|+++......... |.... ..++|+++|+||+|+..... .....++...+++
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~-~~~~~-----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~ 157 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLAN-VYLAL-----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGID 157 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHH-----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCC
Confidence 998888899999999999999998654444333 33221 24789999999999854321 1112233333454
Q ss_pred --eEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300 153 --LFLECSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 153 --~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
.++.+||++|.|+++++++|.+.+...
T Consensus 158 ~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 158 ASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 389999999999999999999876543
No 198
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.83 E-value=1.5e-19 Score=133.62 Aligned_cols=173 Identities=20% Similarity=0.191 Sum_probs=124.6
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh------hh------c
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE------RF------R 76 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~------~~------~ 76 (211)
....+..+|+++|.||+|||||.|.+.+........-..++.......+.....++.|+||||.- .+ -
T Consensus 67 ~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 44578899999999999999999999999987777777777777777777778899999999921 11 1
Q ss_pred cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc-------------ccC--HH
Q 028300 77 TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER-------------VVS--RE 141 (211)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~-------------~v~--~~ 141 (211)
......+.++|.+++++|+++.-..-+-+ .+..+..+ ..+|-++|+||.|....+ .+. ..
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~--vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl 221 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLHPR--VLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKL 221 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccChH--HHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhh
Confidence 12345678899999999999632211111 33344433 578999999999974332 111 11
Q ss_pred HHHHHHHHc----------CC----eEEEeeccCCCcHHHHHHHHHHHHHhccchhccc
Q 028300 142 EGIALAKEH----------GS----LFLECSAKTRENVEQCFEQLALKIMEVPSLLEEG 186 (211)
Q Consensus 142 ~~~~~~~~~----------~~----~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~~~~ 186 (211)
+.++.+... ++ .+|.+||++|+||+++-++|+..+......++..
T Consensus 222 ~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~ 280 (379)
T KOG1423|consen 222 EVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPAD 280 (379)
T ss_pred hHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcc
Confidence 112211111 23 2899999999999999999999999988887765
No 199
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.2e-20 Score=128.03 Aligned_cols=161 Identities=27% Similarity=0.401 Sum_probs=122.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC--------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhc
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV--------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYY 83 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 83 (211)
...+.|+++|+-++|||||+.++..... ....++.|-... +++-....+.|||.+|++..+++|..++
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig----~i~v~~~~l~fwdlgGQe~lrSlw~~yY 90 (197)
T KOG0076|consen 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG----TIEVCNAPLSFWDLGGQESLRSLWKKYY 90 (197)
T ss_pred hhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec----ceeeccceeEEEEcCChHHHHHHHHHHH
Confidence 4567899999999999999998763321 223344444443 2222356789999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH---HHc---CCeEEEe
Q 028300 84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA---KEH---GSLFLEC 157 (211)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~---~~~---~~~~~~~ 157 (211)
.-++++|+++|+++++.++.....+...+. .-...++|+++.+||.|+.+... ..++.... ... ..++.++
T Consensus 91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~-~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 91 WLAHGIIYVIDATDRERFEESKTAFEKVVE-NEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HHhceeEEeecCCCHHHHHHHHHHHHHHHH-HHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCccccc
Confidence 999999999999999999988874444443 33578999999999999865433 23332222 222 3469999
Q ss_pred eccCCCcHHHHHHHHHHHHHhc
Q 028300 158 SAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 158 Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
||.+|+||++...|+...+.++
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999998877
No 200
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.83 E-value=5.2e-20 Score=134.59 Aligned_cols=148 Identities=20% Similarity=0.174 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCC------------------------------CCccceeeEEEEEEECCEEEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDL------------------------------SPTIGVDFKIKLLTVAGKRLKLT 65 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 65 (211)
||+++|++|+|||||+++|+...-... ....+++.......+...+..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999975432111 01134455555555555667889
Q ss_pred EEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc----CHH
Q 028300 66 IWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV----SRE 141 (211)
Q Consensus 66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v----~~~ 141 (211)
||||||+.+|.......+..+|++++|+|+++...-.. .. ....+... ...++++|+||+|+.+.... ...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~-~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RR-HSYILSLL---GIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HH-HHHHHHHc---CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 99999998876556667889999999999987532111 11 11222211 22457889999998643221 112
Q ss_pred HHHHHHHHcC---CeEEEeeccCCCcHHHH
Q 028300 142 EGIALAKEHG---SLFLECSAKTRENVEQC 168 (211)
Q Consensus 142 ~~~~~~~~~~---~~~~~~Sa~~~~gv~~l 168 (211)
+...+...++ .+++.+||+++.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 3334444555 45999999999999753
No 201
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.83 E-value=1e-19 Score=146.34 Aligned_cols=156 Identities=20% Similarity=0.147 Sum_probs=105.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhC--CCCC----------------------------CCCccceeeEEEEEEECCE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISS--SVDD----------------------------LSPTIGVDFKIKLLTVAGK 60 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~--~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 60 (211)
....++|+++|++++|||||+++|+.. .... .....+.+.......+...
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 345689999999999999999999852 1110 0112355555555566667
Q ss_pred EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHH-HHHHhhhhccCCCccEEEEeecCCCCCCccc-
Q 028300 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDV-WAKEVDLYSTNQDCVKMLVGNKVDRDSERVV- 138 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v- 138 (211)
.+.+.|||+||+.+|.......+..+|++++|+|+++.++....... +...... ....|+++++||+|+.+....
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~---~~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART---LGINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH---cCCCeEEEEEEChhccCccHHH
Confidence 78999999999988866566667899999999999987533211110 1111221 223579999999999642221
Q ss_pred ---CHHHHHHHHHHcC-----CeEEEeeccCCCcHHHHH
Q 028300 139 ---SREEGIALAKEHG-----SLFLECSAKTRENVEQCF 169 (211)
Q Consensus 139 ---~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~ 169 (211)
...+...++...+ ++++++||+++.|+.+.+
T Consensus 161 ~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 1234445555544 579999999999998744
No 202
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=7.7e-19 Score=120.85 Aligned_cols=159 Identities=22% Similarity=0.233 Sum_probs=116.7
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCC-----C-CccceeeEEEEEEE----CCEEEEEEEEeCCChhhhccch
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDL-----S-PTIGVDFKIKLLTV----AGKRLKLTIWDTAGQERFRTLT 79 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~-----~-~~~~~~~~~~~~~~----~~~~~~~~l~D~~g~~~~~~~~ 79 (211)
....+.||+|.|+.++||||++++++....... . ...+.....+.+.+ .+.+..+.++++|||.+|.-+|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 446788999999999999999999997763111 0 01110001111111 1234678999999999999999
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc--CCeEEEe
Q 028300 80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH--GSLFLEC 157 (211)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~ 157 (211)
....+.++++|+++|.+.+..+ .... ++..+... ..+|++|++||.|+.+.. +.+.++++.... ..++++.
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~-ii~f~~~~---~~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~~ 158 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEE-IIDFLTSR---NPIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIEI 158 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHH-HHHHHhhc---cCCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceeee
Confidence 9999999999999999998887 4443 45555433 239999999999996654 555555555544 7899999
Q ss_pred eccCCCcHHHHHHHHHHH
Q 028300 158 SAKTRENVEQCFEQLALK 175 (211)
Q Consensus 158 Sa~~~~gv~~l~~~i~~~ 175 (211)
++.+++++.+.++.++..
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999988887765
No 203
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.82 E-value=6.6e-19 Score=130.60 Aligned_cols=152 Identities=23% Similarity=0.152 Sum_probs=97.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc-------cchhhhccCCcE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR-------TLTSSYYRGAQG 88 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d~ 88 (211)
+|+++|++|+|||||+++|.+..... ....+++.......+...+..+++||+||..+.. ......++++|+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v-~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~ 80 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV-AAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL 80 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc-cCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence 78999999999999999999875321 1112222222222222245678999999964322 123457889999
Q ss_pred EEEEEECCChh-hHHHHHHHHHHH-----------------------------------------hhhh---c-------
Q 028300 89 IILVYDVTRRE-TFTNLSDVWAKE-----------------------------------------VDLY---S------- 116 (211)
Q Consensus 89 ~i~v~d~~~~~-s~~~~~~~~~~~-----------------------------------------~~~~---~------- 116 (211)
+++|+|+++.+ ....+.. .+.. +..+ .
T Consensus 81 il~V~D~t~~~~~~~~~~~-~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 81 ILMVLDATKPEGHREILER-ELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEecCCcchhHHHHHHH-HHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 99999998765 3333322 1111 1100 0
Q ss_pred -----------c--CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300 117 -----------T--NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 117 -----------~--~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
. ..-+|+++|+||+|+... ++...++. ..+++++||+++.|++++|+.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-----~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-----EELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-----HHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 123689999999998532 33333333 24589999999999999999988755
No 204
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.82 E-value=9e-19 Score=126.32 Aligned_cols=146 Identities=14% Similarity=0.062 Sum_probs=100.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV---------------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL 78 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 78 (211)
.++|+++|+.++|||||+++|+.... .......+.+.......+.....++.|+||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 58999999999999999999985411 011124456666666666666778999999999888776
Q ss_pred hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccC---HHHHHHHHHHc----
Q 028300 79 TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVS---REEGIALAKEH---- 150 (211)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~---~~~~~~~~~~~---- 150 (211)
....+..+|++++|+|+...-.-. ... ....+. ..++| +++++||+|+....... ..++..+....
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~-~~~~~~----~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TRE-HLLLAR----QVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHH-HHHHHH----HcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 777888999999999998642211 111 222332 23566 77899999985332211 12344444443
Q ss_pred -CCeEEEeeccCCCcH
Q 028300 151 -GSLFLECSAKTRENV 165 (211)
Q Consensus 151 -~~~~~~~Sa~~~~gv 165 (211)
+++++++||++|.++
T Consensus 156 ~~v~iipiSa~~g~n~ 171 (195)
T cd01884 156 DNTPIVRGSALKALEG 171 (195)
T ss_pred cCCeEEEeeCccccCC
Confidence 368999999999875
No 205
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=2.7e-19 Score=147.91 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=113.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC--CCCCC-------------CCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchh
Q 028300 16 KILLIGDSGVGKSSLLVSFISS--SVDDL-------------SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTS 80 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (211)
+|+++|+.++|||||+++|+.. .+... ....|.+.......+...+..+.||||||+.+|...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 7999999999999999999863 23111 12335566555555555678999999999999988889
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC-HHHHHHHHH-------HcCC
Q 028300 81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS-REEGIALAK-------EHGS 152 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~-~~~~~~~~~-------~~~~ 152 (211)
..++.+|++++|+|+++.. ...... |...+.. .++|+++|+||+|+...+... ..+...+.. +..+
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~-~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRF-VLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHH-HHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 9999999999999998632 223333 4333332 478999999999986543211 222333332 2357
Q ss_pred eEEEeeccCCC----------cHHHHHHHHHHHHHhc
Q 028300 153 LFLECSAKTRE----------NVEQCFEQLALKIMEV 179 (211)
Q Consensus 153 ~~~~~Sa~~~~----------gv~~l~~~i~~~~~~~ 179 (211)
|++.+||+++. |+..+|+.|++.+...
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 89999999995 7999999998877544
No 206
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=1.2e-18 Score=143.91 Aligned_cols=161 Identities=17% Similarity=0.160 Sum_probs=115.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhh--CCCCC-------------CCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFIS--SSVDD-------------LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT 77 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 77 (211)
+-.+|+++|+.++|||||+++|+. +.+.. ...+.+.++......+...+..+.+||+||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 346899999999999999999996 33321 123456777766667777788999999999999998
Q ss_pred chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc-CHHHHHHHHH-------H
Q 028300 78 LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-SREEGIALAK-------E 149 (211)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-~~~~~~~~~~-------~ 149 (211)
.+..+++.+|++++|+|+++.... .... +...+. ..++|.++++||+|+...+.. ...+...+.. .
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~-~l~~a~----~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMP-QTRF-VTKKAF----AYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccH-HHHH-HHHHHH----HcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccc
Confidence 899999999999999999874222 2222 222222 247899999999998644321 1122333321 2
Q ss_pred cCCeEEEeeccCCC----------cHHHHHHHHHHHHHhc
Q 028300 150 HGSLFLECSAKTRE----------NVEQCFEQLALKIMEV 179 (211)
Q Consensus 150 ~~~~~~~~Sa~~~~----------gv~~l~~~i~~~~~~~ 179 (211)
..+|++.+||.+|. |+..+++.|++.+...
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 35789999999998 6888888888776543
No 207
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.81 E-value=3.8e-19 Score=141.99 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=104.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCC--ccceeeEEE--------------------EEEECC------EEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP--TIGVDFKIK--------------------LLTVAG------KRLK 63 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~--------------------~~~~~~------~~~~ 63 (211)
...++|+++|++++|||||+++|.+...+.... ..+.+...- ....+. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 357899999999999999999997542211111 111111100 000011 1467
Q ss_pred EEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CHH
Q 028300 64 LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SRE 141 (211)
Q Consensus 64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~~ 141 (211)
+.+||+||+++|...+...+..+|++++|+|+++......... .+..+.. ....|+++++||+|+.+.... ..+
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e-~l~~l~~---~gi~~iIVvvNK~Dl~~~~~~~~~~~ 157 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKE-HLMALEI---IGIKNIVIVQNKIDLVSKEKALENYE 157 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHH-HHHHHHH---cCCCeEEEEEEccccCCHHHHHHHHH
Confidence 8999999999998777888889999999999996421111111 1112221 223578999999998654321 122
Q ss_pred HHHHHHHHc---CCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300 142 EGIALAKEH---GSLFLECSAKTRENVEQCFEQLALKIM 177 (211)
Q Consensus 142 ~~~~~~~~~---~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 177 (211)
+...+.... +++++++||+++.|+++++++|...+.
T Consensus 158 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 158 EIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 333333332 578999999999999999999987654
No 208
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.81 E-value=7.9e-19 Score=144.63 Aligned_cols=154 Identities=23% Similarity=0.169 Sum_probs=102.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCCCCC-----CCccceeeEEEEEEE------------CCEEEEEEEEeCCChhhhc
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSVDDL-----SPTIGVDFKIKLLTV------------AGKRLKLTIWDTAGQERFR 76 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~-----~~~~~~~~~~~~~~~------------~~~~~~~~l~D~~g~~~~~ 76 (211)
+.-|+++|++++|||||+++|.+..+... +.+.+..+....... ......+.||||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 45699999999999999999998776321 122232222111100 0011238899999999999
Q ss_pred cchhhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc------------CHH
Q 028300 77 TLTSSYYRGAQGIILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV------------SRE 141 (211)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v------------~~~ 141 (211)
.++...++.+|++++|+|+++ +++++.+.. +. ..++|+++++||+|+.+.... ...
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~-----l~----~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALNI-----LR----MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH-----HH----HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 888889999999999999987 444444321 22 237899999999998532110 000
Q ss_pred HH------------HHHHH------------Hc--CCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300 142 EG------------IALAK------------EH--GSLFLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 142 ~~------------~~~~~------------~~--~~~~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
.. .++.. .+ .++++++||++|+|+++++.+|....
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 00 01110 11 35799999999999999999887543
No 209
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.81 E-value=9.7e-19 Score=129.89 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=81.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCC--------------CC---CCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVD--------------DL---SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL 78 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~--------------~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 78 (211)
+|+++|++|+|||||+++|+...-. .. ....+.+.......+...+.++.+|||||+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999999864210 00 112233444444455556788999999999988888
Q ss_pred hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 79 TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
+...++.+|++++|+|+++.... .... +...+.. .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~-~~~~~~~----~~~P~iivvNK~D~~~ 130 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRI-LWRLLRK----LNIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHH-HHHHHHH----cCCCEEEEEECccccC
Confidence 88899999999999999986432 2222 3333332 4789999999999853
No 210
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.81 E-value=1.4e-18 Score=122.70 Aligned_cols=151 Identities=21% Similarity=0.229 Sum_probs=98.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh----------hccchhhhcc
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER----------FRTLTSSYYR 84 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~~ 84 (211)
.|+++|++|+|||||++.+.+..+ ....++.+.+.....+..+. .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 389999999999999999996555 55556666655544444333 889999999432 3333333333
Q ss_pred ---CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH--HHHHHHHH--HcCCeEEEe
Q 028300 85 ---GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR--EEGIALAK--EHGSLFLEC 157 (211)
Q Consensus 85 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--~~~~~~~~--~~~~~~~~~ 157 (211)
+.+++++++|..+..+..... ....+.. .+.|+++++||+|+........ ........ ....+++++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~--~~~~l~~----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLE--MLDWLEE----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF 151 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHH--HHHHHHH----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence 457899999988653222211 2222222 2589999999999854332211 11222222 234579999
Q ss_pred eccCCCcHHHHHHHHHHH
Q 028300 158 SAKTRENVEQCFEQLALK 175 (211)
Q Consensus 158 Sa~~~~gv~~l~~~i~~~ 175 (211)
|++++.|+.+++++|.+.
T Consensus 152 Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 152 SSLKGQGIDELRALIEKW 169 (170)
T ss_pred ecCCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 211
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=2.5e-19 Score=123.33 Aligned_cols=167 Identities=31% Similarity=0.555 Sum_probs=138.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
-..++++++|..|.|||+++++++-++| ..+.++.|...+...+.-+...+.+..||+.|++.+..+...++=+.-..+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 4678999999999999999999999999 568899999888777655555799999999999999988888888899999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
+.||++....+.++.. |...+... ..++|+++++||.|..... +. .+...+.+..+..|+++|++.+.+.+.-|-
T Consensus 88 imFdVtsr~t~~n~~r-whrd~~rv--~~NiPiv~cGNKvDi~~r~-~k-~k~v~~~rkknl~y~~iSaksn~NfekPFl 162 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPR-WHRDLVRV--RENIPIVLCGNKVDIKARK-VK-AKPVSFHRKKNLQYYEISAKSNYNFERPFL 162 (216)
T ss_pred EEeeeeehhhhhcchH-HHHHHHHH--hcCCCeeeeccceeccccc-cc-cccceeeecccceeEEeecccccccccchH
Confidence 9999999999999988 66555443 5679999999999985432 11 122334455677899999999999999999
Q ss_pred HHHHHHHhccchh
Q 028300 171 QLALKIMEVPSLL 183 (211)
Q Consensus 171 ~i~~~~~~~~~~~ 183 (211)
|+..++.....+.
T Consensus 163 ~LarKl~G~p~Le 175 (216)
T KOG0096|consen 163 WLARKLTGDPSLE 175 (216)
T ss_pred HHhhhhcCCCCeE
Confidence 9999988876553
No 212
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.80 E-value=9.3e-19 Score=139.71 Aligned_cols=159 Identities=21% Similarity=0.210 Sum_probs=102.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC--CccceeeEEE----E------------EE----EC--C----EEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS--PTIGVDFKIK----L------------LT----VA--G----KRL 62 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~----~------------~~----~~--~----~~~ 62 (211)
....++|+++|+.++|||||+.+|.+...+... ...+.+.... . +. .. + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 456799999999999999999999654221111 1122222110 0 00 00 0 135
Q ss_pred EEEEEeCCChhhhccchhhhccCCcEEEEEEECCChh----hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc
Q 028300 63 KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE----TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV 138 (211)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v 138 (211)
.+.|||+||+.+|.......+..+|++++|+|++++. +.+.+. .+.. ....|+++|+||+|+.+....
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~-----~l~~---~~i~~iiVVlNK~Dl~~~~~~ 157 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM-----ALDI---IGIKNIVIVQNKIDLVSKERA 157 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH-----HHHH---cCCCcEEEEEEeeccccchhH
Confidence 7899999999988766666667889999999999642 222221 1221 123478999999998654322
Q ss_pred C--HHHHHHHHHH---cCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300 139 S--REEGIALAKE---HGSLFLECSAKTRENVEQCFEQLALKIM 177 (211)
Q Consensus 139 ~--~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 177 (211)
. .++...+... .+.+++++||+++.|+++++++|.+.+.
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 1 2233333332 2478999999999999999999987664
No 213
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=3.2e-18 Score=142.22 Aligned_cols=155 Identities=19% Similarity=0.199 Sum_probs=103.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCC--CccceeeEEEEEEEC-CEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLS--PTIGVDFKIKLLTVA-GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
+-|+++|++++|||||+++|.+...+... ...|.+.......+. ..+..+.|||+||++.|.......+..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 35899999999999999999865432211 123444333222221 123458999999999987666777899999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccC--HHHHHHHHHHcC---CeEEEeeccCC
Q 028300 92 VYDVTR---RETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVS--REEGIALAKEHG---SLFLECSAKTR 162 (211)
Q Consensus 92 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~--~~~~~~~~~~~~---~~~~~~Sa~~~ 162 (211)
|+|+++ +++.+.+. .+. ..++| +++|+||+|+.+..... .++...+....+ ++++++||++|
T Consensus 81 VVda~eg~~~qT~ehl~-----il~----~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG 151 (614)
T PRK10512 81 VVACDDGVMAQTREHLA-----ILQ----LTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEG 151 (614)
T ss_pred EEECCCCCcHHHHHHHH-----HHH----HcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Confidence 999987 33333322 222 22455 57999999986533221 223334443333 68999999999
Q ss_pred CcHHHHHHHHHHHHHh
Q 028300 163 ENVEQCFEQLALKIME 178 (211)
Q Consensus 163 ~gv~~l~~~i~~~~~~ 178 (211)
.|++++++.|.+....
T Consensus 152 ~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 152 RGIDALREHLLQLPER 167 (614)
T ss_pred CCCHHHHHHHHHhhcc
Confidence 9999999998875443
No 214
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=6.7e-18 Score=118.76 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=115.5
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCC----------hhhhc
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG----------QERFR 76 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~ 76 (211)
.-+.+...-|+++|.+|||||||||+|++..- .....++|.+.....+.+++. +.++|.|| .+.+.
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~ 94 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWK 94 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHH
Confidence 34445677899999999999999999999764 888889999998888887664 78899999 23444
Q ss_pred cchhhhcc---CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH--HHHH-HHHHHc
Q 028300 77 TLTSSYYR---GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR--EEGI-ALAKEH 150 (211)
Q Consensus 77 ~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--~~~~-~~~~~~ 150 (211)
.+...++. +..++++++|+..+-.-.+. .+.+.+. ..++|++|++||+|.....+... .... .+....
T Consensus 95 ~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~----~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~ 168 (200)
T COG0218 95 KLIEEYLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLL----ELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP 168 (200)
T ss_pred HHHHHHHhhchhheEEEEEEECCCCCcHHHH--HHHHHHH----HcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC
Confidence 45555554 34788999998875433222 2444444 45999999999999876544332 1122 111112
Q ss_pred CCe--EEEeeccCCCcHHHHHHHHHHHHHh
Q 028300 151 GSL--FLECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 151 ~~~--~~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
... ++..|+..+.|++++...|.+.+..
T Consensus 169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 222 7889999999999999998887654
No 215
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.80 E-value=5.6e-21 Score=131.02 Aligned_cols=171 Identities=35% Similarity=0.558 Sum_probs=140.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCE-EEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
-+.-+++.|+|.-|+|||+++.++....| ..+..+.|.++.......+.. -+.+.|||+.|++++..+..-+++.+.+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 35668999999999999999999998888 677788888877666655543 3678999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhcc---CCCccEEEEeecCCCCCCccc-CHHHHHHHHHHcCCe-EEEeeccCCC
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYST---NQDCVKMLVGNKVDRDSERVV-SREEGIALAKEHGSL-FLECSAKTRE 163 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~viv~nK~Dl~~~~~v-~~~~~~~~~~~~~~~-~~~~Sa~~~~ 163 (211)
.++|||++....|+.... |.+.+..... ....|+++.+||+|....... ......++.+.+++. .+++|++.+.
T Consensus 102 ~~iVfdvt~s~tfe~~sk-wkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenk 180 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSK-WKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENK 180 (229)
T ss_pred eEEEEEccccccccHHHH-HHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeecccccc
Confidence 999999999999999998 9888865432 346788999999998543221 235566777788864 9999999999
Q ss_pred cHHHHHHHHHHHHHhccch
Q 028300 164 NVEQCFEQLALKIMEVPSL 182 (211)
Q Consensus 164 gv~~l~~~i~~~~~~~~~~ 182 (211)
+++|+...+++.++-+...
T Consensus 181 ni~Ea~r~lVe~~lvnd~q 199 (229)
T KOG4423|consen 181 NIPEAQRELVEKILVNDEQ 199 (229)
T ss_pred ChhHHHHHHHHHHHhhccC
Confidence 9999999999988777643
No 216
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.79 E-value=2.3e-18 Score=115.93 Aligned_cols=135 Identities=24% Similarity=0.259 Sum_probs=95.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh----hhccchhhhccCCcEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE----RFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~----~~~~~~~~~~~~~d~~i~ 91 (211)
||.++|+.|+|||||+++|.+.+. .+..|....+. =.++||||.- .+..........+|.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 799999999999999999997653 22222222221 2447999932 222333445568999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe-EEEeeccCCCcHHHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTRENVEQCFE 170 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~gv~~l~~ 170 (211)
+.|++++.+...-.. ....+.|++=|+||+|+.. ...+.+.++++.+..|+. +|++|+.+|+|++++.+
T Consensus 70 l~dat~~~~~~pP~f---------a~~f~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 70 LQDATEPRSVFPPGF---------ASMFNKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred EecCCCCCccCCchh---------hcccCCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 999999754322221 1234789999999999963 234566677777777774 89999999999999998
Q ss_pred HHH
Q 028300 171 QLA 173 (211)
Q Consensus 171 ~i~ 173 (211)
+|-
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 864
No 217
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.79 E-value=5.3e-18 Score=140.24 Aligned_cols=156 Identities=24% Similarity=0.211 Sum_probs=101.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCC-----ccceeeEEEEEEE--CCEE-----E-----EEEEEeCCChhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP-----TIGVDFKIKLLTV--AGKR-----L-----KLTIWDTAGQER 74 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~-----~-----~~~l~D~~g~~~ 74 (211)
.++..|+++|++++|||||+++|.+.......+ +.|.++....... .+.. . .+.||||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 456689999999999999999998665422111 2222221111000 0111 1 268999999999
Q ss_pred hccchhhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc----C--------
Q 028300 75 FRTLTSSYYRGAQGIILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV----S-------- 139 (211)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v----~-------- 139 (211)
|..++...+..+|++++|+|+++ +++++.+.. +. ..++|+++++||+|+...... .
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~-----~~----~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI-----LK----RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH-----HH----HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 99888888899999999999997 555554432 11 247899999999998522110 0
Q ss_pred HH-----------HHHHHHHH---------------cCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300 140 RE-----------EGIALAKE---------------HGSLFLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 140 ~~-----------~~~~~~~~---------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
.. +...+... ..++++++||.+|.|++++++.+...+
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 00111111 135799999999999999998876533
No 218
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.79 E-value=1e-18 Score=128.70 Aligned_cols=147 Identities=18% Similarity=0.125 Sum_probs=96.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC------------------------------CCCCCccceeeEEEEEEECCEEEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV------------------------------DDLSPTIGVDFKIKLLTVAGKRLKLT 65 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (211)
+|+++|++++|||||+.+|+...- .......|++.......+...+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999963211 01111335556655666666778899
Q ss_pred EEeCCChhhhccchhhhccCCcEEEEEEECCChhh------HHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC--cc
Q 028300 66 IWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRET------FTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE--RV 137 (211)
Q Consensus 66 l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~--~~ 137 (211)
+||+||+..+...+...+..+|++++|+|+++... .......+ ..... ...+|+++++||+|+... ..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART---LGVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH---cCCCeEEEEEEccccccccccH
Confidence 99999998776666677788999999999998421 01111112 11221 224689999999998632 11
Q ss_pred cCH----HHHHHHHHHc-----CCeEEEeeccCCCcHH
Q 028300 138 VSR----EEGIALAKEH-----GSLFLECSAKTRENVE 166 (211)
Q Consensus 138 v~~----~~~~~~~~~~-----~~~~~~~Sa~~~~gv~ 166 (211)
... .+...+.... .++++++||++|.|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 111 1222223333 3679999999999986
No 219
>PRK12736 elongation factor Tu; Reviewed
Probab=99.79 E-value=6.3e-18 Score=134.52 Aligned_cols=160 Identities=15% Similarity=0.081 Sum_probs=106.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV---------------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (211)
....++|+++|++++|||||+++|++... .......|.+.......+......+.|+|+||+.+|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 45679999999999999999999986311 011124456666666666666678899999999988
Q ss_pred ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccC---HHHHHHHHHHcC
Q 028300 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVS---REEGIALAKEHG 151 (211)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~---~~~~~~~~~~~~ 151 (211)
.......+..+|++++|+|+++...-.. .. ....+. ..++| +++++||+|+.+..+.. ..+...+....+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~-~~~~~~----~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT-RE-HILLAR----QVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HH-HHHHHH----HcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 7666666788999999999986321111 11 222222 23677 67889999986432221 123444444443
Q ss_pred -----CeEEEeeccCCC--------cHHHHHHHHHHHH
Q 028300 152 -----SLFLECSAKTRE--------NVEQCFEQLALKI 176 (211)
Q Consensus 152 -----~~~~~~Sa~~~~--------gv~~l~~~i~~~~ 176 (211)
++++++||+++. ++.++++.+.+.+
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 589999999983 4666666666554
No 220
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.78 E-value=1.1e-18 Score=138.67 Aligned_cols=168 Identities=27% Similarity=0.333 Sum_probs=124.6
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
......+||+++|..|+||||||-.+...+|....|..-..+... ....-..+...++|++...+.+......++++|+
T Consensus 4 ~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP-advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 4 DETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP-ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred ccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC-CccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence 345678999999999999999999999999955544433322211 1222233457889998766655556788999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHH-HHHHHHHcC-C-eEEEeeccCCCc
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREE-GIALAKEHG-S-LFLECSAKTREN 164 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~-~~~~~~~~~-~-~~~~~Sa~~~~g 164 (211)
+.++|+++++.+++.+..+|+++++.... ..++|+|+|+||+|......-..+. ...+..++. + ..++|||++..+
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999987632 3689999999999986544332222 333333332 2 389999999999
Q ss_pred HHHHHHHHHHHHH
Q 028300 165 VEQCFEQLALKIM 177 (211)
Q Consensus 165 v~~l~~~i~~~~~ 177 (211)
+.++|....+++.
T Consensus 163 ~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 163 VSELFYYAQKAVI 175 (625)
T ss_pred hHhhhhhhhheee
Confidence 9999988776554
No 221
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.78 E-value=6.8e-18 Score=137.31 Aligned_cols=158 Identities=18% Similarity=0.146 Sum_probs=117.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc------cchhh-hc-c
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR------TLTSS-YY-R 84 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~-~~-~ 84 (211)
+..+|+++|+||+|||||+|++.+... ....-+|.+.+.++..+...+..+++.|+||--... ...+. .+ .
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 356799999999999999999997653 344567888888888887777789999999932221 22233 33 4
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCc
Q 028300 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTREN 164 (211)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (211)
++|+++-|+|+++.+. ......+. . ..+.|++++.|++|..+...+.. +.+.+.+.+|+|+++++|++|.|
T Consensus 81 ~~D~ivnVvDAtnLeR---nLyltlQL-l----E~g~p~ilaLNm~D~A~~~Gi~I-D~~~L~~~LGvPVv~tvA~~g~G 151 (653)
T COG0370 81 KPDLIVNVVDATNLER---NLYLTLQL-L----ELGIPMILALNMIDEAKKRGIRI-DIEKLSKLLGVPVVPTVAKRGEG 151 (653)
T ss_pred CCCEEEEEcccchHHH---HHHHHHHH-H----HcCCCeEEEeccHhhHHhcCCcc-cHHHHHHHhCCCEEEEEeecCCC
Confidence 6699999999998643 22212222 2 24889999999999866554433 34566778999999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 028300 165 VEQCFEQLALKIMEVP 180 (211)
Q Consensus 165 v~~l~~~i~~~~~~~~ 180 (211)
++++...+.+...+..
T Consensus 152 ~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 152 LEELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHHHhccccc
Confidence 9999999887555544
No 222
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.77 E-value=5.3e-18 Score=124.53 Aligned_cols=112 Identities=27% Similarity=0.319 Sum_probs=79.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCC------------------CCccceeeEEEEEEE-----CCEEEEEEEEeCCCh
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDL------------------SPTIGVDFKIKLLTV-----AGKRLKLTIWDTAGQ 72 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~ 72 (211)
+|+++|++|+|||||+++|+....... ....+.+.......+ ++..+.+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987554211 011222222222222 345688999999999
Q ss_pred hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
.++.......+..+|++++|+|+++..+.... . +..... ..++|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~-~-~~~~~~----~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE-R-LIRHAI----LEGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECcccC
Confidence 98877788889999999999999876554332 2 333322 2358999999999974
No 223
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=1.5e-17 Score=132.56 Aligned_cols=147 Identities=15% Similarity=0.082 Sum_probs=98.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV---------------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (211)
....++|+++|+.++|||||+++|++... .......|.+.......+......+.|||+||+.+|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 35679999999999999999999974310 011123456666666666666778999999999988
Q ss_pred ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEE-EEeecCCCCCCcccC---HHHHHHHHHHcC
Q 028300 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGNKVDRDSERVVS---REEGIALAKEHG 151 (211)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~v-iv~nK~Dl~~~~~v~---~~~~~~~~~~~~ 151 (211)
.......+..+|++++|+|+.+.-.... .. ....+. ..++|.+ +++||+|+.+..... ..+...+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e-~l~~~~----~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQT-RE-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 6656666788899999999987321111 11 222222 2366755 689999986533221 123445555544
Q ss_pred -----CeEEEeeccCCC
Q 028300 152 -----SLFLECSAKTRE 163 (211)
Q Consensus 152 -----~~~~~~Sa~~~~ 163 (211)
++++++|+.++.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 689999999874
No 224
>PRK12735 elongation factor Tu; Reviewed
Probab=99.76 E-value=3.6e-17 Score=130.27 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=105.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCC-------C--------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSS-------V--------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (211)
....++|+++|++++|||||+++|++.. + .......|.+.......+.....++.|+|+||+.+|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 4567999999999999999999998621 0 011123456666555566566678899999999888
Q ss_pred ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEE-EEeecCCCCCCcccC---HHHHHHHHHHcC
Q 028300 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGNKVDRDSERVVS---REEGIALAKEHG 151 (211)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~v-iv~nK~Dl~~~~~v~---~~~~~~~~~~~~ 151 (211)
.......+..+|++++|+|+.+.... .... +...+. ..++|.+ +++||+|+.+..+.. ..+...+....+
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~-qt~e-~l~~~~----~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMP-QTRE-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCch-hHHH-HHHHHH----HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 66666778899999999999874211 1112 222222 3467865 579999986432211 123444444432
Q ss_pred -----CeEEEeeccCCC----------cHHHHHHHHHHHH
Q 028300 152 -----SLFLECSAKTRE----------NVEQCFEQLALKI 176 (211)
Q Consensus 152 -----~~~~~~Sa~~~~----------gv~~l~~~i~~~~ 176 (211)
++++++|+.++. ++.++++.|...+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 679999999984 5666666665543
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.76 E-value=2.6e-17 Score=121.18 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=94.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCC------------------------ccceeeEEEE-------------EEEC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSP------------------------TIGVDFKIKL-------------LTVA 58 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~------------------------~~~~~~~~~~-------------~~~~ 58 (211)
||+++|+.++|||||+++|..+.++.... ..+.+..... -.+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999765532110 0011110000 0111
Q ss_pred CEEEEEEEEeCCChhhhccchhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc
Q 028300 59 GKRLKLTIWDTAGQERFRTLTSSYYR--GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER 136 (211)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~ 136 (211)
..+..+.++|+||+..|.......+. .+|++++|+|+.....-.. .. +...+. ..++|+++|+||+|+.+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~-~l~~l~----~~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KE-HLGLAL----ALNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCEEEEEECccccCHH
Confidence 23457899999999888654444443 6899999999886532111 11 333333 3478999999999985433
Q ss_pred ccCH--HHHHHHHH--------------------------HcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 137 VVSR--EEGIALAK--------------------------EHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 137 ~v~~--~~~~~~~~--------------------------~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
.... .+...+.. ...+|+|.+|+.+|.|++++...|.
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 2211 11222211 0124899999999999999887654
No 226
>CHL00071 tufA elongation factor Tu
Probab=99.75 E-value=4.9e-17 Score=130.02 Aligned_cols=148 Identities=14% Similarity=0.058 Sum_probs=100.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV---------------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (211)
....++|+++|++++|||||+++|++... .......|.+.......+.....++.|+|+||+.+|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 45679999999999999999999986421 111122456666555556556678899999999888
Q ss_pred ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccC---HHHHHHHHHHcC
Q 028300 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVS---REEGIALAKEHG 151 (211)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~---~~~~~~~~~~~~ 151 (211)
.......+..+|++++|+|+.+.-.- .... ....+. ..++| +++++||+|+.+..+.. ..+...+....+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~-~~~~~~----~~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMP-QTKE-HILLAK----QVGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcH-HHHH-HHHHHH----HcCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 66667778899999999999864221 1111 222222 33678 67899999986533221 123444444433
Q ss_pred -----CeEEEeeccCCCc
Q 028300 152 -----SLFLECSAKTREN 164 (211)
Q Consensus 152 -----~~~~~~Sa~~~~g 164 (211)
++++.+|+.++.+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 163 FPGDDIPIVSGSALLALE 180 (409)
T ss_pred CCCCcceEEEcchhhccc
Confidence 6899999999864
No 227
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.75 E-value=3.7e-17 Score=121.60 Aligned_cols=155 Identities=22% Similarity=0.267 Sum_probs=104.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEE-EEEEEEeCCChhhh----ccchh---hhccCCc
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKR-LKLTIWDTAGQERF----RTLTS---SYYRGAQ 87 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~~g~~~~----~~~~~---~~~~~~d 87 (211)
.|.++|.|++|||||++.+.+... ...+...++..+...+...++ .++.+-|+||.-+- ..+-. .-++.++
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~ 276 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK 276 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence 578999999999999999998775 222222222222222222233 33899999994322 22222 3356789
Q ss_pred EEEEEEECCCh---hhHHHHHHHHHHHhhhhc-cCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe-EEEeeccCC
Q 028300 88 GIILVYDVTRR---ETFTNLSDVWAKEVDLYS-TNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTR 162 (211)
Q Consensus 88 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~ 162 (211)
.++||+|++.. +.++.+.. +..++..+. .....|.+||+||+|+.+. ......++++...-+ ++++||+++
T Consensus 277 ~l~fVvD~s~~~~~~p~~~~~l-L~~ELe~yek~L~~rp~liVaNKiD~~ea---e~~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489|consen 277 GLLFVVDLSGKQLRNPWQQLQL-LIEELELYEKGLADRPALIVANKIDLPEA---EKNLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred eEEEEEECCCcccCCHHHHHHH-HHHHHHHHhhhhccCceEEEEeccCchhH---HHHHHHHHHHHcCCCcEEEeeeccc
Confidence 99999999998 77777777 555555442 3567899999999998532 112234555555444 999999999
Q ss_pred CcHHHHHHHHHHH
Q 028300 163 ENVEQCFEQLALK 175 (211)
Q Consensus 163 ~gv~~l~~~i~~~ 175 (211)
+|+.++++.|.+.
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 353 EGLEELLNGLREL 365 (366)
T ss_pred cchHHHHHHHhhc
Confidence 9999998887653
No 228
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.75 E-value=2.9e-17 Score=120.46 Aligned_cols=170 Identities=19% Similarity=0.223 Sum_probs=108.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEE-CCEEEEEEEEeCCChhhhc-----cchhhhccCCcEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTV-AGKRLKLTIWDTAGQERFR-----TLTSSYYRGAQGI 89 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~-----~~~~~~~~~~d~~ 89 (211)
||+++|+.+|||||+.+.+..+..+......+.+.......+ ......+.+||+||+..+. ......+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 799999999999999999997765544444444333333333 2334589999999986442 3457788999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhh-hccCCCccEEEEeecCCCCCCcccC------HHHHHHHHHHcC---CeEEEeec
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDL-YSTNQDCVKMLVGNKVDRDSERVVS------REEGIALAKEHG---SLFLECSA 159 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~p~viv~nK~Dl~~~~~v~------~~~~~~~~~~~~---~~~~~~Sa 159 (211)
|||+|+.+.+..+.+.. +...+.. +...+++.+.+.+.|+|+..++... .+.+...+...+ +.++.||.
T Consensus 81 IyV~D~qs~~~~~~l~~-~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAY-LSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-STCHHHHHH-HHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEcccccHHHHHHH-HHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 99999996554444443 4444332 2237899999999999986432211 122233333444 67889998
Q ss_pred cCCCcHHHHHHHHHHHHHhccchhcccc
Q 028300 160 KTRENVEQCFEQLALKIMEVPSLLEEGS 187 (211)
Q Consensus 160 ~~~~gv~~l~~~i~~~~~~~~~~~~~~~ 187 (211)
.+ ..+-+.|..|++.+..+....++..
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP~~~~le~~L 186 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIPNLSTLENLL 186 (232)
T ss_dssp TS-THHHHHHHHHHHTTSTTHCCCCCCC
T ss_pred cC-cHHHHHHHHHHHHHcccHHHHHHHH
Confidence 88 5899999999999988877766653
No 229
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.74 E-value=5.9e-17 Score=117.53 Aligned_cols=159 Identities=21% Similarity=0.227 Sum_probs=97.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccc---eeeEEEEEEECCEEEEEEEEeCCChhhhcc-----chhhhcc
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIG---VDFKIKLLTVAGKRLKLTIWDTAGQERFRT-----LTSSYYR 84 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----~~~~~~~ 84 (211)
+++|+++|.+|+|||||+|.|.+..+. ......+ ++.....+... ....+.+||+||...... +....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999999986542 1222222 11111111111 123689999999643221 2223367
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc-------CHHH----HHHHH----HH
Q 028300 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-------SREE----GIALA----KE 149 (211)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-------~~~~----~~~~~----~~ 149 (211)
++|+++++.+. .+......|...+... +.|+++|+||+|+...... ..++ .++.. ..
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh----CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 78998888542 2333433366666543 6899999999998432110 0111 11111 12
Q ss_pred cC---CeEEEeecc--CCCcHHHHHHHHHHHHHhccc
Q 028300 150 HG---SLFLECSAK--TRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 150 ~~---~~~~~~Sa~--~~~gv~~l~~~i~~~~~~~~~ 181 (211)
.+ -++|.+|+. .+.++..+.+.|+..+.+.++
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 12 258999998 578999999999998887654
No 230
>COG2262 HflX GTPases [General function prediction only]
Probab=99.74 E-value=2e-16 Score=121.94 Aligned_cols=161 Identities=19% Similarity=0.140 Sum_probs=111.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChh---------hhccchh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE---------RFRTLTS 80 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~ 80 (211)
...-..|+++|-.|+|||||+|.|.+... ........-+-+.+.+.+.+ +..+.+-||.|.- .|.+. -
T Consensus 189 ~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksT-L 266 (411)
T COG2262 189 RSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKST-L 266 (411)
T ss_pred ccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHH-H
Confidence 34567899999999999999999997664 23222222333334444543 4567888999932 23332 2
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300 81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK 160 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 160 (211)
.....+|.+++|+|++++...+.+.. ....+... ....+|+++|+||+|+..... ... ....... ..+.+||+
T Consensus 267 EE~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el-~~~~~p~i~v~NKiD~~~~~~-~~~---~~~~~~~-~~v~iSA~ 339 (411)
T COG2262 267 EEVKEADLLLHVVDASDPEILEKLEA-VEDVLAEI-GADEIPIILVLNKIDLLEDEE-ILA---ELERGSP-NPVFISAK 339 (411)
T ss_pred HHhhcCCEEEEEeecCChhHHHHHHH-HHHHHHHc-CCCCCCEEEEEecccccCchh-hhh---hhhhcCC-CeEEEEec
Confidence 34578999999999999977777666 55566554 345699999999999754433 111 1111112 58999999
Q ss_pred CCCcHHHHHHHHHHHHHhcc
Q 028300 161 TRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~~~~~ 180 (211)
++.|++.+++.|.+.+....
T Consensus 340 ~~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 340 TGEGLDLLRERIIELLSGLR 359 (411)
T ss_pred cCcCHHHHHHHHHHHhhhcc
Confidence 99999999999999887554
No 231
>PLN03126 Elongation factor Tu; Provisional
Probab=99.72 E-value=2.7e-16 Score=127.10 Aligned_cols=147 Identities=14% Similarity=0.056 Sum_probs=99.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV---------------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (211)
....++|+++|++++|||||+++|+.... .......+.+.......++..+..+.|+|+||+.+|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 45678999999999999999999985211 111223455555555555556678899999999998
Q ss_pred ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccC---HHHHHHHHHHc-
Q 028300 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVS---REEGIALAKEH- 150 (211)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~---~~~~~~~~~~~- 150 (211)
.......+..+|++++|+|+.+...-.. .. +...+. ..++| +++++||+|+.+..+.. ..+...+....
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e-~~~~~~----~~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQT-KE-HILLAK----QVGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HH-HHHHHH----HcCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence 7666777889999999999887532211 22 222333 23777 77899999986532221 12334444443
Q ss_pred ----CCeEEEeeccCCC
Q 028300 151 ----GSLFLECSAKTRE 163 (211)
Q Consensus 151 ----~~~~~~~Sa~~~~ 163 (211)
.++++.+|+.++.
T Consensus 232 ~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 232 FPGDDIPIISGSALLAL 248 (478)
T ss_pred CCcCcceEEEEEccccc
Confidence 4689999998874
No 232
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=2.6e-17 Score=111.10 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=120.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
.+.-|++++|..|+|||||++.|.........||...+..... -...+++.+|++|+..-+..|..++..+|++++
T Consensus 18 kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~----Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 18 KKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELS----IGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred ccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHhe----ecCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 4566899999999999999999998888888888877766333 366788999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH---HHc-----------C---CeE
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA---KEH-----------G---SLF 154 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~---~~~-----------~---~~~ 154 (211)
.+|+-+.+.+.+.+..+...+.. ......|++|.+||+|.+.+. ..++.+... ... + ..+
T Consensus 94 lvda~d~er~~es~~eld~ll~~-e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev 170 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSD-ESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV 170 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhH-HHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence 99999999988887744444432 245789999999999986553 333322111 111 1 236
Q ss_pred EEeeccCCCcHHHHHHHHHHH
Q 028300 155 LECSAKTRENVEQCFEQLALK 175 (211)
Q Consensus 155 ~~~Sa~~~~gv~~l~~~i~~~ 175 (211)
+.||...+.|-.+.|.|+.+.
T Consensus 171 fmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 171 FMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEEccCccceeeeehhhh
Confidence 888998888877778777654
No 233
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.72 E-value=1.6e-16 Score=119.92 Aligned_cols=115 Identities=15% Similarity=0.192 Sum_probs=81.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC--CCC---------C----------CccceeeEEEEEEECCEEEEEEEEeCCChh
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV--DDL---------S----------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~--~~~---------~----------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (211)
-+|+++|++|+|||||+++|+...- ... . ...+.+.......+...+..+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 4799999999999999999985321 100 0 012334444455666677899999999999
Q ss_pred hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~ 135 (211)
+|.......++.+|++++|+|+++..... ... +..... ..++|+++++||+|+...
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~-i~~~~~----~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRK-LFEVCR----LRGIPIITFINKLDREGR 138 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHH-HHHHHH----hcCCCEEEEEECCccCCC
Confidence 88776777889999999999998753211 122 223322 347899999999998654
No 234
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.72 E-value=1.3e-16 Score=129.39 Aligned_cols=153 Identities=18% Similarity=0.124 Sum_probs=97.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCC--------------C------------------CccceeeEEEEEEEC
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDL--------------S------------------PTIGVDFKIKLLTVA 58 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~--------------~------------------~~~~~~~~~~~~~~~ 58 (211)
....++|+++|++++|||||+++|+...-... . ...|.+.......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 35679999999999999999999985432100 0 012334444444455
Q ss_pred CEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc
Q 028300 59 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV 138 (211)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v 138 (211)
....++.||||||+..|.......+..+|++++|+|+.+.-.-..... + ..+... ...|+++++||+|+.+.+..
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~-~l~~~l---g~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-S-FIATLL---GIKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-H-HHHHHh---CCCceEEEEEeeccccchhH
Confidence 566789999999998886555556799999999999986421111111 1 111111 12478999999998643221
Q ss_pred CHHHH----HHHHHHc----CCeEEEeeccCCCcHHHH
Q 028300 139 SREEG----IALAKEH----GSLFLECSAKTRENVEQC 168 (211)
Q Consensus 139 ~~~~~----~~~~~~~----~~~~~~~Sa~~~~gv~~l 168 (211)
...+. ..+.... .++++++||+++.|+.++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 11222 2222232 367999999999999765
No 235
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=3.4e-16 Score=124.20 Aligned_cols=155 Identities=21% Similarity=0.244 Sum_probs=112.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECC---EEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAG---KRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
.++.-|+++|+..-|||||+.++....... ...-|.+.+.--+.+.. ....+.|+|||||+.|..+......-+|+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~-~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAA-GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCcccc-ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 356679999999999999999998766522 22334444444444432 23578999999999999999999899999
Q ss_pred EEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC---------CeEEE
Q 028300 89 IILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG---------SLFLE 156 (211)
Q Consensus 89 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~---------~~~~~ 156 (211)
++||++++| +++.+.+.. ....+.|+++++||+|..+. +..........++ ..+++
T Consensus 82 aILVVa~dDGv~pQTiEAI~h---------ak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~Vp 149 (509)
T COG0532 82 AILVVAADDGVMPQTIEAINH---------AKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVP 149 (509)
T ss_pred EEEEEEccCCcchhHHHHHHH---------HHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEE
Confidence 999999998 444444332 24569999999999998743 3333333333333 35899
Q ss_pred eeccCCCcHHHHHHHHHHHHHhc
Q 028300 157 CSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 157 ~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
+||++|.|+++|+..++-...-.
T Consensus 150 vSA~tg~Gi~eLL~~ill~aev~ 172 (509)
T COG0532 150 VSAKTGEGIDELLELILLLAEVL 172 (509)
T ss_pred eeccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998877644433
No 236
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=3.5e-16 Score=117.20 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=107.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh-----hc----cchhhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER-----FR----TLTSSY 82 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----~~----~~~~~~ 82 (211)
.....|+|.|.||||||||++.+...+. +..+-+.++.......++.....++++||||.-+ -+ ....+.
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL 244 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL 244 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence 3677899999999999999999997764 3344455555555556666778899999999321 11 111222
Q ss_pred ccCCcEEEEEEECCCh--hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeec
Q 028300 83 YRGAQGIILVYDVTRR--ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSA 159 (211)
Q Consensus 83 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa 159 (211)
-.-.++++|+||.+.- -+++.... +...++.. .+.|+++|+||+|..+.+.+... .......+. ....+++
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~--~~~~~~~~~~~~~~~~~ 318 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQIS-LLEEIKEL---FKAPIVVVINKIDIADEEKLEEI--EASVLEEGGEEPLKISA 318 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHh---cCCCeEEEEecccccchhHHHHH--HHHHHhhccccccceee
Confidence 2335889999999864 35666666 34444332 34899999999998755544333 333333343 3778888
Q ss_pred cCCCcHHHHHHHHHHHHHh
Q 028300 160 KTRENVEQCFEQLALKIME 178 (211)
Q Consensus 160 ~~~~gv~~l~~~i~~~~~~ 178 (211)
..+.+++.+-..+.....+
T Consensus 319 ~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 319 TKGCGLDKLREEVRKTALE 337 (346)
T ss_pred eehhhHHHHHHHHHHHhhc
Confidence 8898888777776665443
No 237
>PRK00049 elongation factor Tu; Reviewed
Probab=99.71 E-value=5.3e-16 Score=123.55 Aligned_cols=147 Identities=13% Similarity=0.072 Sum_probs=98.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCC---------------CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVD---------------DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (211)
....++|+++|++++|||||+++|++.... ......|.+.......+.....++.|+||||+.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 356799999999999999999999863110 11114456666555566556678899999999888
Q ss_pred ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEE-EEeecCCCCCCcccC---HHHHHHHHHHc-
Q 028300 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM-LVGNKVDRDSERVVS---REEGIALAKEH- 150 (211)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~v-iv~nK~Dl~~~~~v~---~~~~~~~~~~~- 150 (211)
.......+..+|++++|+|+.+...- .... +...+. ..++|.+ +++||+|+.+..... ..+...+....
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~-~~~~~~----~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMP-QTRE-HILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCch-HHHH-HHHHHH----HcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 66666778899999999999874221 1112 223333 2367876 589999986422211 12233333332
Q ss_pred ----CCeEEEeeccCCC
Q 028300 151 ----GSLFLECSAKTRE 163 (211)
Q Consensus 151 ----~~~~~~~Sa~~~~ 163 (211)
.++++.+||.++.
T Consensus 163 ~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 163 FPGDDTPIIRGSALKAL 179 (396)
T ss_pred CCccCCcEEEeeccccc
Confidence 3689999999875
No 238
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.71 E-value=3.6e-16 Score=125.87 Aligned_cols=150 Identities=20% Similarity=0.214 Sum_probs=103.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCccceeeEEEEEEECCEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV--D----------------------------DLSPTIGVDFKIKLLTVAGKR 61 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (211)
...++|+++|+.++|||||+.+|+...- . ......|.+.......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 4578999999999999999999874211 0 011123455555555667777
Q ss_pred EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHH-------HHHHHHHHHhhhhccCCCc-cEEEEeecCCCC
Q 028300 62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFT-------NLSDVWAKEVDLYSTNQDC-VKMLVGNKVDRD 133 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~~-p~viv~nK~Dl~ 133 (211)
..+.++|+||+.+|.......+..+|++|+|+|+++. .++ .... ..... ...++ ++++++||+|+.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~e-h~~~~----~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTRE-HALLA----FTLGVKQMICCCNKMDAT 158 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHH-HHHHH----HHcCCCcEEEEEEcccCC
Confidence 8999999999999988888889999999999999873 221 2222 11112 23466 468889999975
Q ss_pred CCc--cc----CHHHHHHHHHHcC-----CeEEEeeccCCCcHHH
Q 028300 134 SER--VV----SREEGIALAKEHG-----SLFLECSAKTRENVEQ 167 (211)
Q Consensus 134 ~~~--~v----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~ 167 (211)
+.. .. ..+++..++...+ ++|+++||++|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 211 10 1234555555554 6799999999999853
No 239
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.71 E-value=1e-16 Score=128.04 Aligned_cols=148 Identities=19% Similarity=0.193 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC--CC------------------------------CCCccceeeEEEEEEECCEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV--DD------------------------------LSPTIGVDFKIKLLTVAGKRL 62 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~--~~------------------------------~~~~~~~~~~~~~~~~~~~~~ 62 (211)
+||+++|++++|||||+.+|+...- .. .....+.+.......+...+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999974321 00 001123344444445555667
Q ss_pred EEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH--
Q 028300 63 KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR-- 140 (211)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~-- 140 (211)
++.|+|+||+.+|.......+..+|++++|+|+.+...-.... ....+... ...++++++||+|+.+......
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~--~~~~~~~~---~~~~iivviNK~D~~~~~~~~~~~ 155 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRR--HSYIASLL---GIRHVVLAVNKMDLVDYDEEVFEN 155 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHH--HHHHHHHc---CCCcEEEEEEecccccchHHHHHH
Confidence 8999999999988665666789999999999988642211111 11112211 2346889999999864322111
Q ss_pred --HHHHHHHHHcC---CeEEEeeccCCCcHHH
Q 028300 141 --EEGIALAKEHG---SLFLECSAKTRENVEQ 167 (211)
Q Consensus 141 --~~~~~~~~~~~---~~~~~~Sa~~~~gv~~ 167 (211)
++...+....+ ++++++||++|.|+.+
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 12222333333 4799999999999875
No 240
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.71 E-value=1.4e-16 Score=120.42 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=80.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC--C---------------CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV--D---------------DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL 78 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 78 (211)
+|+++|++|+|||||+++|+...- . ......+.+.......+...+.++.+|||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999999999974211 0 01123345555444555556788999999999888877
Q ss_pred hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300 79 TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~ 135 (211)
+...++.+|++++|+|+.+...-.. .. +...+. ..++|+++++||+|+...
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~-~~~~~~----~~~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ET-VWRQAD----RYNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HH-HHHHHH----HcCCCEEEEEECCCCCCC
Confidence 8889999999999999987432221 12 222232 347899999999998643
No 241
>PLN03127 Elongation factor Tu; Provisional
Probab=99.71 E-value=5.7e-16 Score=124.61 Aligned_cols=159 Identities=14% Similarity=0.062 Sum_probs=102.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC------CC---------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS------SV---------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR 76 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (211)
...++|+++|++++|||||+++|.+. .. .......|++.......++....++.|+|+||+.+|-
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccchH
Confidence 46789999999999999999999722 10 0111235666666666776677789999999998876
Q ss_pred cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccCH---HHHHHHHHHc--
Q 028300 77 TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVSR---EEGIALAKEH-- 150 (211)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~~---~~~~~~~~~~-- 150 (211)
......+..+|++++|+|+.+...-. ... ....+. ..++| +++++||+|+.+...... .+...+....
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~~q-t~e-~l~~~~----~~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPMPQ-TKE-HILLAR----QVGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchh-HHH-HHHHHH----HcCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 55555667899999999988642211 111 222222 34688 478899999864322111 1222333222
Q ss_pred ---CCeEEEeecc---CCCc-------HHHHHHHHHHHH
Q 028300 151 ---GSLFLECSAK---TREN-------VEQCFEQLALKI 176 (211)
Q Consensus 151 ---~~~~~~~Sa~---~~~g-------v~~l~~~i~~~~ 176 (211)
.++++.+|+. ++.+ +.++++.+.+.+
T Consensus 213 ~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 213 PGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 3678888875 4444 566666666544
No 242
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.70 E-value=4e-16 Score=127.64 Aligned_cols=117 Identities=16% Similarity=0.237 Sum_probs=81.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCC--CCC-------------------CCCccceeeEEEEEEECCEEEEEEEEeCC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSS--VDD-------------------LSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 70 (211)
.+..+|+|+|++++|||||+++|+... ... .....+.++......+...+..+.+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 456699999999999999999997411 100 00112334444444555567889999999
Q ss_pred ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
|+.+|.......++.+|++|+|+|+++.... .... +..... ..++|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~-l~~~~~----~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRK-LMEVCR----LRDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHH-HHHHHH----hcCCCEEEEEECCcccc
Confidence 9998887677788999999999999874321 1222 223222 35899999999999743
No 243
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.70 E-value=4.8e-16 Score=114.05 Aligned_cols=112 Identities=21% Similarity=0.275 Sum_probs=77.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC--CCCC-------------CccceeeEE--EEEEEC--------CEEEEEEEEeCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV--DDLS-------------PTIGVDFKI--KLLTVA--------GKRLKLTIWDTA 70 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~--~~~~-------------~~~~~~~~~--~~~~~~--------~~~~~~~l~D~~ 70 (211)
+|+++|+.++|||||+.+|+...- .... ...+.+... ....+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 699999999999999999985432 1000 011222111 122232 337889999999
Q ss_pred ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
|+.+|.......++.+|++++|+|+++......... +.. .. ..++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~-l~~-~~----~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETV-LRQ-AL----KERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHH-HHH-HH----HcCCCEEEEEECCCcc
Confidence 999998888899999999999999998654433221 222 11 2468999999999975
No 244
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.70 E-value=9e-16 Score=111.31 Aligned_cols=163 Identities=14% Similarity=0.141 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc-----------chhhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT-----------LTSSY 82 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-----------~~~~~ 82 (211)
++|+++|.+|+|||||+|.+++... .......+.+...........+..+.++||||..+... .....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4899999999999999999998764 22211223332222222222456789999999543211 11223
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhh-ccCCCccEEEEeecCCCCCCcccC------HHHHHHHHHHcCCeEE
Q 028300 83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLY-STNQDCVKMLVGNKVDRDSERVVS------REEGIALAKEHGSLFL 155 (211)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~viv~nK~Dl~~~~~v~------~~~~~~~~~~~~~~~~ 155 (211)
..++|++++|+++.+ .+-.+.. .+..+... ....-.++++++|+.|......+. ....+.+....+..|+
T Consensus 81 ~~g~~~illVi~~~~-~t~~d~~--~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~ 157 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEEEQ--AVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYV 157 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHHHH--HHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEE
Confidence 467899999999887 2222211 23333222 112235889999999975443211 1233444555555665
Q ss_pred Eee-----ccCCCcHHHHHHHHHHHHHhcc
Q 028300 156 ECS-----AKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 156 ~~S-----a~~~~gv~~l~~~i~~~~~~~~ 180 (211)
..+ +..+.++.++++.|.+.+.++.
T Consensus 158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 158 AFNNKAKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred EEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 555 4557899999999888887743
No 245
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.70 E-value=4.3e-16 Score=125.48 Aligned_cols=152 Identities=20% Similarity=0.178 Sum_probs=100.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCccceeeEEEEEEECCE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV--D----------------------------DLSPTIGVDFKIKLLTVAGK 60 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~ 60 (211)
....++|+++|+.++|||||+.+|+...- . ......|.+.......+...
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 35678999999999999999999975210 0 01112345555555566677
Q ss_pred EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhh---H---HHHHHHHHHHhhhhccCCCcc-EEEEeecCCCC
Q 028300 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRET---F---TNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRD 133 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~ 133 (211)
...+.|+|+||+.+|.......+..+|++++|+|+++... + ..... ....+ ...++| +++++||+|..
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~e-h~~~~----~~~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTRE-HALLA----FTLGVKQMIVCINKMDDK 158 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHH-HHHHH----HHcCCCeEEEEEEccccc
Confidence 7899999999999998777888899999999999986420 0 11111 11122 234666 67899999953
Q ss_pred C--CcccC----HHHHHHHHHHc-----CCeEEEeeccCCCcHHH
Q 028300 134 S--ERVVS----REEGIALAKEH-----GSLFLECSAKTRENVEQ 167 (211)
Q Consensus 134 ~--~~~v~----~~~~~~~~~~~-----~~~~~~~Sa~~~~gv~~ 167 (211)
. ..+-. ..++..+.... .++++++|+.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 2 11111 12233333332 36799999999999853
No 246
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=9.7e-16 Score=121.43 Aligned_cols=156 Identities=20% Similarity=0.209 Sum_probs=111.5
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEE--EEECCEEEEEEEEeCCChhhhccchhhhcc
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKL--LTVAGKRLKLTIWDTAGQERFRTLTSSYYR 84 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 84 (211)
++.-.+++.-|.++|+..-|||||+.+|....... ...-|.+...-- +.+. .+..++|.|||||..|..+......
T Consensus 146 p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA-~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~ 223 (683)
T KOG1145|consen 146 PKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAA-GEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGAN 223 (683)
T ss_pred HhhcCCCCCeEEEeecccCChhhHHHHHhhCceeh-hhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCc
Confidence 44556788899999999999999999998665411 112233322222 2233 3367899999999999999999999
Q ss_pred CCcEEEEEEECCCh---hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-------C--C
Q 028300 85 GAQGIILVYDVTRR---ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-------G--S 152 (211)
Q Consensus 85 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-------~--~ 152 (211)
-.|++++|+.++|. ++.+.+. +....+.|+++++||+|.+... .+...+....+ | +
T Consensus 224 vtDIvVLVVAadDGVmpQT~EaIk---------hAk~A~VpiVvAinKiDkp~a~---pekv~~eL~~~gi~~E~~GGdV 291 (683)
T KOG1145|consen 224 VTDIVVLVVAADDGVMPQTLEAIK---------HAKSANVPIVVAINKIDKPGAN---PEKVKRELLSQGIVVEDLGGDV 291 (683)
T ss_pred cccEEEEEEEccCCccHhHHHHHH---------HHHhcCCCEEEEEeccCCCCCC---HHHHHHHHHHcCccHHHcCCce
Confidence 99999999999983 3333322 2356799999999999986543 33333333333 3 3
Q ss_pred eEEEeeccCCCcHHHHHHHHHHHH
Q 028300 153 LFLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 153 ~~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
.++++||++|.|++.+-+.++-..
T Consensus 292 QvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 292 QVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred eEEEeecccCCChHHHHHHHHHHH
Confidence 589999999999999988876543
No 247
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.70 E-value=2e-16 Score=105.14 Aligned_cols=104 Identities=23% Similarity=0.302 Sum_probs=67.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEE--EEEEECCEEEEEEEEeCCChhh----------hccchhhhc
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKI--KLLTVAGKRLKLTIWDTAGQER----------FRTLTSSYY 83 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~----------~~~~~~~~~ 83 (211)
+|+|+|.+|+|||||+|+|++..........+.+... ..+.+.+.. +.++|+||... +.... ..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~-~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFL-EQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHH-HHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHH-HHH
Confidence 6999999999999999999986543333333333333 233444444 46999999432 11223 334
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeec
Q 028300 84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129 (211)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK 129 (211)
..+|++++|+|++++.. +.... +...+ . .+.|+++|+||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~~~-~~~~l----~-~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDDKN-ILREL----K-NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHHHH-HHHHH----H-TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHHHH-HHHHH----h-cCCCEEEEEcC
Confidence 89999999999887422 12222 33333 2 58999999998
No 248
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.1e-16 Score=125.34 Aligned_cols=168 Identities=21% Similarity=0.222 Sum_probs=118.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc---------chhhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT---------LTSSY 82 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---------~~~~~ 82 (211)
...+.|+++|+||+|||||+|.|.+.+.....|.+|+++..+...++-.++.+.|.||+|.-+... -...-
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 456899999999999999999999999999999999999999998888899999999999654111 13445
Q ss_pred ccCCcEEEEEEECCChh--hHHHHHHHHHHHhhh-----hccCCCccEEEEeecCCCCCC-cccCHHHHHHHHHHcC---
Q 028300 83 YRGAQGIILVYDVTRRE--TFTNLSDVWAKEVDL-----YSTNQDCVKMLVGNKVDRDSE-RVVSREEGIALAKEHG--- 151 (211)
Q Consensus 83 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~-----~~~~~~~p~viv~nK~Dl~~~-~~v~~~~~~~~~~~~~--- 151 (211)
+..+|++++|+|+.... +-..+.. .+..... -......|++++.||+|+... .+.... ...+....+
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~-~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~-~~~~~~~~~~~~ 423 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIAR-ILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKI-PVVYPSAEGRSV 423 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHH-HHHHhccceEEEeccccccceEEEechhhccCccccccCC-ceeccccccCcc
Confidence 67899999999994322 2222222 2222111 012345799999999998654 111110 111112112
Q ss_pred C-eEEEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300 152 S-LFLECSAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 152 ~-~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
. .+.++|+++++|++++.+.+.+.+.....
T Consensus 424 ~~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 424 FPIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred cceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 2 35669999999999999999988776544
No 249
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.69 E-value=5.9e-16 Score=116.53 Aligned_cols=162 Identities=21% Similarity=0.198 Sum_probs=108.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC--CCCCCccc-eeeEEEEEEECCEEEEEEEEeCCChhhhc----cchhh---hccC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV--DDLSPTIG-VDFKIKLLTVAGKRLKLTIWDTAGQERFR----TLTSS---YYRG 85 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----~~~~~---~~~~ 85 (211)
-|.++|.|++|||||++.+..... ..|.-|.- ...-.+.. .....+.+-|+||.-+-. .+-.. -+..
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 467999999999999999998775 33332221 12222222 334468889999943321 22222 3456
Q ss_pred CcEEEEEEECCChh---hHHHHHHHHHHHhhhhc-cCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEE-eecc
Q 028300 86 AQGIILVYDVTRRE---TFTNLSDVWAKEVDLYS-TNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLE-CSAK 160 (211)
Q Consensus 86 ~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~-~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~-~Sa~ 160 (211)
+-++++|+|++..+ ..++... +..++..+. ...++|.+||+||+|+....+......+.+....++..+. +|+.
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~-i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~ 316 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQT-IRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISAL 316 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHH-HHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehh
Confidence 79999999998654 3666666 666776662 3568999999999996554433333344444445544222 9999
Q ss_pred CCCcHHHHHHHHHHHHHhccc
Q 028300 161 TRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~~~~~~ 181 (211)
++.|++++...+.+.+.....
T Consensus 317 t~~g~~~L~~~~~~~l~~~~~ 337 (369)
T COG0536 317 TREGLDELLRALAELLEETKA 337 (369)
T ss_pred cccCHHHHHHHHHHHHHHhhh
Confidence 999999999999888877753
No 250
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.69 E-value=1.5e-15 Score=115.28 Aligned_cols=144 Identities=17% Similarity=0.231 Sum_probs=90.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCC-----------CCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc----
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDL-----------SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT---- 77 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---- 77 (211)
..++|+++|.+|+|||||+|+|++..+... .++.........+..++..+.+.+|||||..+...
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998876222 22223333334445566778999999999432110
Q ss_pred ----------------------chhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 78 ----------------------LTSSYYR--GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 78 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
.....+. .+|+++|+++.+.. .+......++..+. .++|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcC
Confidence 0101222 46888888887652 11111111333332 268999999999986
Q ss_pred CCcc--cCHHHHHHHHHHcCCeEEEeeccCC
Q 028300 134 SERV--VSREEGIALAKEHGSLFLECSAKTR 162 (211)
Q Consensus 134 ~~~~--v~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (211)
...+ .....+.+.+..+++++|..+....
T Consensus 157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~~ 187 (276)
T cd01850 157 TPEELKEFKQRIMEDIEEHNIKIYKFPEDEE 187 (276)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceECCCCCcc
Confidence 5332 2334456667778888888766433
No 251
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.68 E-value=8.3e-16 Score=116.70 Aligned_cols=114 Identities=21% Similarity=0.313 Sum_probs=77.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCC--C---CC--C----------ccceeeEEEEEEECCEEEEEEEEeCCChhhhccc
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVD--D---LS--P----------TIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL 78 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~--~---~~--~----------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~ 78 (211)
+|+++|++|+|||||+++|+..... . .. . ..+.+.......+...+..+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999999754311 0 00 0 0112222222233334578899999999888777
Q ss_pred hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300 79 TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~ 135 (211)
+...+..+|++++|+|+++......... |. .+. ..++|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~-~~-~~~----~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKL-WE-FAD----EAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHH-HH-HHH----HcCCCEEEEEECCccCCC
Confidence 8888999999999999998654332222 32 222 347899999999998654
No 252
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.67 E-value=1.3e-15 Score=117.24 Aligned_cols=162 Identities=19% Similarity=0.253 Sum_probs=97.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCC--CC-----CCccceeeEEEE---------------EEECC-EEEEEEEEeCCCh-
Q 028300 17 ILLIGDSGVGKSSLLVSFISSSVD--DL-----SPTIGVDFKIKL---------------LTVAG-KRLKLTIWDTAGQ- 72 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~~~~--~~-----~~~~~~~~~~~~---------------~~~~~-~~~~~~l~D~~g~- 72 (211)
|+++|.|+||||||+++|.+..+. .+ .|+.|..+.... ...++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999987641 11 222222221100 00112 3467999999996
Q ss_pred ---hhhccchhh---hccCCcEEEEEEECCCh-------------h---hHHHHHH---HH---------HH--------
Q 028300 73 ---ERFRTLTSS---YYRGAQGIILVYDVTRR-------------E---TFTNLSD---VW---------AK-------- 110 (211)
Q Consensus 73 ---~~~~~~~~~---~~~~~d~~i~v~d~~~~-------------~---s~~~~~~---~~---------~~-------- 110 (211)
.++..+... .++++|++++|+|++.. + .++.+.. .| ..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334444334 48999999999999731 1 1111111 01 00
Q ss_pred ------------------------Hhhh--------------------hccCCCccEEEEeecCCCCCCcccCHHHHHHH
Q 028300 111 ------------------------EVDL--------------------YSTNQDCVKMLVGNKVDRDSERVVSREEGIAL 146 (211)
Q Consensus 111 ------------------------~~~~--------------------~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~ 146 (211)
.+.. ......+|+++|+||+|+...... ...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~----~~~l 236 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN----ISKL 236 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH----HHHH
Confidence 0000 001235799999999997433221 1112
Q ss_pred HHHc-CCeEEEeeccCCCcHHHHHH-HHHHHHHhccch
Q 028300 147 AKEH-GSLFLECSAKTRENVEQCFE-QLALKIMEVPSL 182 (211)
Q Consensus 147 ~~~~-~~~~~~~Sa~~~~gv~~l~~-~i~~~~~~~~~~ 182 (211)
.... ..+++.+||+.+.++.++.+ .+.+.+.+....
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f 274 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDF 274 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCc
Confidence 2222 45799999999999999998 588887665443
No 253
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.67 E-value=1.6e-15 Score=124.11 Aligned_cols=117 Identities=17% Similarity=0.246 Sum_probs=82.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCC-C-CC-------------------CCCccceeeEEEEEEECCEEEEEEEEeC
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSS-V-DD-------------------LSPTIGVDFKIKLLTVAGKRLKLTIWDT 69 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~-~-~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~ 69 (211)
..+..+|+|+|++++|||||+++|+... . .. .....+.++......++..+..+.+|||
T Consensus 8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT 87 (527)
T TIGR00503 8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT 87 (527)
T ss_pred hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence 3556799999999999999999986321 1 00 0012244555555566667789999999
Q ss_pred CChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 70 AGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
||+.+|.......++.+|++|+|+|+++.-. ..... +..... ..++|+++++||+|+.
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~-l~~~~~----~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRK-LMEVTR----LRDTPIFTFMNKLDRD 145 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHH-HHHHHH----hcCCCEEEEEECcccc
Confidence 9998887766778899999999999987411 11222 333332 3478999999999974
No 254
>PRK13351 elongation factor G; Reviewed
Probab=99.67 E-value=6.4e-16 Score=131.21 Aligned_cols=117 Identities=16% Similarity=0.225 Sum_probs=83.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCC-----C---------CC---CccceeeEEEEEEECCEEEEEEEEeCCChhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVD-----D---------LS---PTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~-----~---------~~---~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (211)
++..+|+|+|+.|+|||||+++|+...-. . .. ...+.+.......+......+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 45679999999999999999999853210 0 00 0122233322333444567899999999999
Q ss_pred hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
+...+...++.+|++++|+|+++......... |. .+. ..++|+++++||+|+..
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~-~~-~~~----~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETV-WR-QAD----RYGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HH-HHH----hcCCCEEEEEECCCCCC
Confidence 88888889999999999999998665544332 42 222 34789999999999854
No 255
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.66 E-value=1.7e-16 Score=111.69 Aligned_cols=119 Identities=22% Similarity=0.335 Sum_probs=74.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEE-CCEEEEEEEEeCCChhhhccchhh---hccCCcEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTV-AGKRLKLTIWDTAGQERFRTLTSS---YYRGAQGI 89 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~---~~~~~d~~ 89 (211)
.-.|+++|+.|+|||+|+.+|..+....+......... +.+ ......+.++|+|||.+.+..... .+.++.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~---~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA---YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE---CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce---EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 45789999999999999999999866443333322221 111 223456899999999987764433 47889999
Q ss_pred EEEEECCC-hhhHHHHHHHHHHHhhhhc-cCCCccEEEEeecCCCCCC
Q 028300 90 ILVYDVTR-RETFTNLSDVWAKEVDLYS-TNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 90 i~v~d~~~-~~s~~~~~~~~~~~~~~~~-~~~~~p~viv~nK~Dl~~~ 135 (211)
|||+|.+. ...+.++.+++...+.... ....+|++|++||.|+...
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 99999874 4455666554555554332 3568999999999998654
No 256
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.66 E-value=1.4e-15 Score=127.95 Aligned_cols=153 Identities=19% Similarity=0.143 Sum_probs=97.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCC--------------C------------------CccceeeEEEEEEE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDL--------------S------------------PTIGVDFKIKLLTV 57 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~--------------~------------------~~~~~~~~~~~~~~ 57 (211)
.....++|+++|++++|||||+++|+...-... . ...|.+.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 345678999999999999999999986432111 0 01223333333444
Q ss_pred CCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc
Q 028300 58 AGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV 137 (211)
Q Consensus 58 ~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~ 137 (211)
...+.++.|+|+||+.+|.......+..+|++++|+|+++...-... . ....+... ...++++++||+|+.+...
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~-e-~~~~~~~~---~~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR-R-HSFIASLL---GIRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH-H-HHHHHHHh---CCCeEEEEEEecccccchh
Confidence 45566889999999988765555678899999999999764221111 1 11112211 2357889999999864222
Q ss_pred cCH----HHHHHHHHHcC---CeEEEeeccCCCcHHH
Q 028300 138 VSR----EEGIALAKEHG---SLFLECSAKTRENVEQ 167 (211)
Q Consensus 138 v~~----~~~~~~~~~~~---~~~~~~Sa~~~~gv~~ 167 (211)
... .+...+....+ ++++++||++|.|+.+
T Consensus 175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 111 12223333444 4699999999999874
No 257
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.64 E-value=3.6e-15 Score=119.90 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=101.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCC--------ccceeeEEE----------EE-EECC-------------
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP--------TIGVDFKIK----------LL-TVAG------------- 59 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~--------~~~~~~~~~----------~~-~~~~------------- 59 (211)
...++|+++|+...|||||+.+|.+........ ..|...... .+ ....
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 567899999999999999999999644311111 111111000 00 0000
Q ss_pred ---EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc
Q 028300 60 ---KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER 136 (211)
Q Consensus 60 ---~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~ 136 (211)
....+.|+|+||++.|.......+..+|++++|+|+++......... ....+.. ..-.++++|+||+|+.+..
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~e-hl~i~~~---lgi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSE-HLAAVEI---MKLKHIIILQNKIDLVKEA 187 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHH-HHHHHHH---cCCCcEEEEEecccccCHH
Confidence 02468999999999987767777889999999999987311111111 1122221 1234689999999986432
Q ss_pred ccC--HHHHHHHHHH---cCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300 137 VVS--REEGIALAKE---HGSLFLECSAKTRENVEQCFEQLALKIM 177 (211)
Q Consensus 137 ~v~--~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 177 (211)
... .++...+... ..++++++||++|.|++.+++.|.+.+.
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 221 1222333222 3578999999999999999998887554
No 258
>PRK12739 elongation factor G; Reviewed
Probab=99.64 E-value=9.4e-15 Score=123.97 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=82.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC--C---CCC------------CccceeeEEEEEEECCEEEEEEEEeCCChhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV--D---DLS------------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~---~~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (211)
++-.+|+|+|++++|||||+++|+...- . ... ...+++.......+...+.++.|+||||+.+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 4567899999999999999999975311 0 000 1334555444444545667899999999988
Q ss_pred hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
+...+...++.+|++++|+|+.+.-..... . ....+. ..++|.++++||+|+..
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~-i~~~~~----~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSE-T-VWRQAD----KYGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-H-HHHHHH----HcCCCEEEEEECCCCCC
Confidence 877788889999999999999875332222 1 222222 34789999999999854
No 259
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2.9e-15 Score=115.55 Aligned_cols=158 Identities=21% Similarity=0.157 Sum_probs=106.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCccceeeEEEEEEECCE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV--D----------------------------DLSPTIGVDFKIKLLTVAGK 60 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~ 60 (211)
....++++++|++++|||||+-+|+..-- + ......|.+.......++..
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 35678999999999999999999973221 0 01123466777777777777
Q ss_pred EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHH--HHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc
Q 028300 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN--LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV 138 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v 138 (211)
.+.++++|+||+.+|-.-....+.++|+.|+|+|+.+.+.-.. ........+-......-..+++++||+|+.+.++-
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~ 163 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEE 163 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHH
Confidence 8899999999999888777788899999999999998642111 11001111110101223467888999999775444
Q ss_pred CHHHHH----HHHHHcC-----CeEEEeeccCCCcHHHH
Q 028300 139 SREEGI----ALAKEHG-----SLFLECSAKTRENVEQC 168 (211)
Q Consensus 139 ~~~~~~----~~~~~~~-----~~~~~~Sa~~~~gv~~l 168 (211)
..+++. .+.+..| ++|+++|+..|.++.+.
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 433332 2333332 56999999999998653
No 260
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.62 E-value=4.2e-14 Score=105.89 Aligned_cols=161 Identities=20% Similarity=0.112 Sum_probs=108.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh-------ccchhhhcc
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF-------RTLTSSYYR 84 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~ 84 (211)
+--.+++++|.|++|||||++.|.+... ....-..++...+...+...+.++++.|+||.-+- .......++
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 4456899999999999999999998764 22233444555555566667889999999984321 123556789
Q ss_pred CCcEEEEEEECCChhh-HHHHHHHHHH----------------------------------------Hhhhh--------
Q 028300 85 GAQGIILVYDVTRRET-FTNLSDVWAK----------------------------------------EVDLY-------- 115 (211)
Q Consensus 85 ~~d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~~-------- 115 (211)
+||.+++|+|+....+ .+-+...+.. .+.++
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999997654 3333221111 00000
Q ss_pred --------------cc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 116 --------------ST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 116 --------------~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
.. ..-+|.+.|.||+|+... ++...+.+.. .++.+||..+.|++++.+.|.+.+.-.+
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-----e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~liR 292 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-----EELERLARKP--NSVPISAKKGINLDELKERIWDVLGLIR 292 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-----HHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhCeEE
Confidence 00 013688999999998542 2233333322 6999999999999999999988765444
No 261
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.61 E-value=6.1e-15 Score=108.22 Aligned_cols=165 Identities=19% Similarity=0.244 Sum_probs=108.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcc-ceeeEEEEEEECCEEEEEEEEeCCChh-------hhccchhh
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTI-GVDFKIKLLTVAGKRLKLTIWDTAGQE-------RFRTLTSS 81 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~D~~g~~-------~~~~~~~~ 81 (211)
....+++|+++|..|+|||||||+|+.++........ +++..... ......-.+.|||+||.. +++.....
T Consensus 35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~-~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRL-RLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred cccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhH-HhhccccceEEecCCCcccchhhhHHHHHHHHH
Confidence 3457899999999999999999999976653333211 21111111 111122568999999943 37777888
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc-------ccCHHHHHHHHHH-----
Q 028300 82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER-------VVSREEGIALAKE----- 149 (211)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~-------~v~~~~~~~~~~~----- 149 (211)
++...|.++++.++.|++---+... |+..+.. ..+.++++++|.+|...+- ..+....+++.+.
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~~f-~~dVi~~---~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDEDF-LRDVIIL---GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred HhhhccEEEEeccCCCccccCCHHH-HHHHHHh---ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999754333332 4444432 3458999999999975431 1111111222111
Q ss_pred ----c-CCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300 150 ----H-GSLFLECSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 150 ----~-~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
. =-|++..+...+.|++.+...+++.+...
T Consensus 190 ~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 190 GRLFQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHHHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 1 13688888999999999999999877643
No 262
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2e-14 Score=114.12 Aligned_cols=165 Identities=21% Similarity=0.235 Sum_probs=116.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC--CC------------CCCccceeeEEEEEEE---CCEEEEEEEEeCCChhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV--DD------------LSPTIGVDFKIKLLTV---AGKRLKLTIWDTAGQER 74 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~~------------~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~ 74 (211)
++--++.|+-+..-|||||..+|+...- +. .....|.+.....-.+ .+..+.++++|||||-+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 5556899999999999999999985332 11 1123454444433222 35669999999999999
Q ss_pred hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHH-HHHHHHHHcCCe
Q 028300 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSRE-EGIALAKEHGSL 153 (211)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~-~~~~~~~~~~~~ 153 (211)
|.......+.-+|++|+|+|++..-.-+.+..+|+. ...+..++.|+||+|++.++....+ +..+.+.....+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lA------fe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~ 211 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLA------FEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAE 211 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHH------HHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccc
Confidence 999899999999999999999975333333322221 2457889999999999766543222 223333334457
Q ss_pred EEEeeccCCCcHHHHHHHHHHHHHhccch
Q 028300 154 FLECSAKTRENVEQCFEQLALKIMEVPSL 182 (211)
Q Consensus 154 ~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~ 182 (211)
++.+||++|.|+.+++++|++.+..-...
T Consensus 212 ~i~vSAK~G~~v~~lL~AII~rVPpP~~~ 240 (650)
T KOG0462|consen 212 VIYVSAKTGLNVEELLEAIIRRVPPPKGI 240 (650)
T ss_pred eEEEEeccCccHHHHHHHHHhhCCCCCCC
Confidence 99999999999999999999987665543
No 263
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.61 E-value=3.6e-14 Score=112.40 Aligned_cols=82 Identities=26% Similarity=0.411 Sum_probs=53.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCC--CCC-----CccceeeEEEE--------------E-EEC-CEEEEEEEEeCCC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVD--DLS-----PTIGVDFKIKL--------------L-TVA-GKRLKLTIWDTAG 71 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~--~~~-----~~~~~~~~~~~--------------~-~~~-~~~~~~~l~D~~g 71 (211)
++|+++|.|+||||||+++|.+..+. .+. |+.|....... . ..+ .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 58999999999999999999987762 221 22222111000 0 011 2346789999999
Q ss_pred h----hhhccchhhh---ccCCcEEEEEEECC
Q 028300 72 Q----ERFRTLTSSY---YRGAQGIILVYDVT 96 (211)
Q Consensus 72 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 96 (211)
. .....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 2233333344 88999999999997
No 264
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.61 E-value=1.3e-14 Score=123.09 Aligned_cols=118 Identities=17% Similarity=0.204 Sum_probs=84.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC--C---CCC------------CccceeeEEEEEEECCEEEEEEEEeCCChhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV--D---DLS------------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~---~~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (211)
++-.+|+|+|++++|||||+++|+...- . ... ...+++.......+...+.++.||||||+.+
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 3456999999999999999999974221 0 010 1234555555555555678899999999988
Q ss_pred hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~ 135 (211)
+...+...++.+|++++|+|+.+......... |. .+. ..++|+++++||+|+...
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~-~~-~~~----~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSETV-WR-QAN----RYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHH-HH-HHH----HcCCCEEEEEECCCCCCC
Confidence 87778888999999999999987544333221 32 222 347899999999998654
No 265
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=6.6e-14 Score=98.81 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhcc---CCcEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYR---GAQGIIL 91 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~---~~d~~i~ 91 (211)
-.|.++|+.+||||+|+-+|..+.+..+......... .+.+ ..-.++++|.|||.+.+.-...++. .+-++++
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a--~~r~--gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEA--TYRL--GSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeecccee--eEee--cCcceEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 5789999999999999999998865333322222211 1122 2223789999999988876666666 7899999
Q ss_pred EEECCC-hhhHHHHHHHHHHHhh-hhccCCCccEEEEeecCCCCCCcccCH------HHH------HH------------
Q 028300 92 VYDVTR-RETFTNLSDVWAKEVD-LYSTNQDCVKMLVGNKVDRDSERVVSR------EEG------IA------------ 145 (211)
Q Consensus 92 v~d~~~-~~s~~~~~~~~~~~~~-~~~~~~~~p~viv~nK~Dl~~~~~v~~------~~~------~~------------ 145 (211)
|+|... .-...++..++...+- .......+|++|++||.|+..+..... .|+ +.
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 999654 2234444443333332 222356899999999999843321000 000 00
Q ss_pred ------------HHH--HcCCeEEEeeccCCCcHHHHHHHHHHH
Q 028300 146 ------------LAK--EHGSLFLECSAKTRENVEQCFEQLALK 175 (211)
Q Consensus 146 ------------~~~--~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 175 (211)
|.+ ...+.|.+.|++++ +++++-+||.+.
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 000 12345788888888 899999998764
No 266
>PRK00007 elongation factor G; Reviewed
Probab=99.57 E-value=1.1e-13 Score=117.38 Aligned_cols=117 Identities=18% Similarity=0.237 Sum_probs=81.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCC--CC---CCC------------CccceeeEEEEEEECCEEEEEEEEeCCChh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSS--VD---DLS------------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~--~~---~~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (211)
.++-.+|+|+|++++|||||+++|+... .. ... ...+++.......+...+..+.|+||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 3455699999999999999999997421 10 011 234455555444554556789999999998
Q ss_pred hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
+|.......++.+|++++|+|+...-....... |. .+. ..++|.++++||+|+.
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~-~~-~~~----~~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETV-WR-QAD----KYKVPRIAFVNKMDRT 140 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHH-HH-HHH----HcCCCEEEEEECCCCC
Confidence 876667778889999999999876533222221 22 222 3478999999999985
No 267
>PRK09866 hypothetical protein; Provisional
Probab=99.57 E-value=1.5e-13 Score=112.19 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=71.9
Q ss_pred EEEEEEeCCChhhh-----ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc
Q 028300 62 LKLTIWDTAGQERF-----RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER 136 (211)
Q Consensus 62 ~~~~l~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~ 136 (211)
.++.|+||||.... .......+..+|+++||+|+....+..+.. +...+... ....|+++|+||+|+.+..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~Dee--Ilk~Lkk~--~K~~PVILVVNKIDl~dre 305 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEE--VREAILAV--GQSVPLYVLVNKFDQQDRN 305 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHH--HHHHHHhc--CCCCCEEEEEEcccCCCcc
Confidence 46889999995431 223445789999999999998753333321 33444322 1135999999999985433
Q ss_pred ccCHHHHHHHHH----HcC---CeEEEeeccCCCcHHHHHHHHHH
Q 028300 137 VVSREEGIALAK----EHG---SLFLECSAKTRENVEQCFEQLAL 174 (211)
Q Consensus 137 ~v~~~~~~~~~~----~~~---~~~~~~Sa~~~~gv~~l~~~i~~ 174 (211)
....+....+.. ... ..+|++||++|.|++++++.|..
T Consensus 306 eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 306 SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 222334444432 122 25999999999999999888776
No 268
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.55 E-value=7.4e-14 Score=102.33 Aligned_cols=164 Identities=21% Similarity=0.216 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCc--cceeeEEEEEEECCEEEEEEEEeCCChhhhcc--------c---hh
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPT--IGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT--------L---TS 80 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~---~~ 80 (211)
++|+++|..|+||||++|.+++... ...... .............+ ..+.++||||..+... + ..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 5899999999999999999998775 222111 12223223334444 5678999999432211 0 11
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC-------HHHHHHHHHHcCCe
Q 028300 81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS-------REEGIALAKEHGSL 153 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~-------~~~~~~~~~~~~~~ 153 (211)
....+.+++|||+.+... +-.+... +..+...+....-..++||+|..|......+. ......+....+-.
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~~~~~-l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEEDREV-LELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHHHHH-HHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcc-hHHHHHH-HHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 234578999999999832 2222221 22222222122234689999999875544321 11234455566777
Q ss_pred EEEeecc------CCCcHHHHHHHHHHHHHhccch
Q 028300 154 FLECSAK------TRENVEQCFEQLALKIMEVPSL 182 (211)
Q Consensus 154 ~~~~Sa~------~~~gv~~l~~~i~~~~~~~~~~ 182 (211)
|...+.. ....+.++++.|-+.+.++...
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~ 191 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQ 191 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 8777766 3467888888888888777643
No 269
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.55 E-value=1.5e-13 Score=104.16 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=73.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc-------hhhhc
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL-------TSSYY 83 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~~~~ 83 (211)
....++|+++|.+|+||||++|++++..........+.+...........+..+.+|||||..+.... ...++
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 35788999999999999999999998765332222222222111222224578999999996543211 11111
Q ss_pred --cCCcEEEEEEECCChhhHHHHHHHHHHHhhh-hccCCCccEEEEeecCCCCCCcccC
Q 028300 84 --RGAQGIILVYDVTRRETFTNLSDVWAKEVDL-YSTNQDCVKMLVGNKVDRDSERVVS 139 (211)
Q Consensus 84 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~p~viv~nK~Dl~~~~~v~ 139 (211)
...|+++||..++... +......+...+.. +...--.++++++|+.|..+.+...
T Consensus 115 ~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~ 172 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE 172 (313)
T ss_pred hcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence 2689999997655321 11111112222222 1122235789999999976544333
No 270
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.54 E-value=6.9e-14 Score=90.35 Aligned_cols=136 Identities=23% Similarity=0.213 Sum_probs=94.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh----hccchhhhccCCcEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER----FRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~~~~d~~i~ 91 (211)
||+++|..|+|||||.+.+.+... .+..|...++. .. -.+|+||.-- +-.........+|++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~-lykKTQAve~~-------d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT-LYKKTQAVEFN-------DK----GDIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh-hhcccceeecc-------Cc----cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 799999999999999999987643 22222222211 11 1359999432 21223445678899999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCcHHHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRENVEQCFE 170 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv~~l~~ 170 (211)
|-.++++.+.-... +......|+|-|++|+|+.+.. +....+.+..+.|+ ++|++|+.++.|++++++
T Consensus 71 v~~and~~s~f~p~---------f~~~~~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 71 VHAANDPESRFPPG---------FLDIGVKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred eecccCccccCCcc---------cccccccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence 99999986533222 2234566799999999997533 44566777788786 599999999999999998
Q ss_pred HHHH
Q 028300 171 QLAL 174 (211)
Q Consensus 171 ~i~~ 174 (211)
.+..
T Consensus 140 ~L~~ 143 (148)
T COG4917 140 YLAS 143 (148)
T ss_pred HHHh
Confidence 8654
No 271
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.54 E-value=1.4e-13 Score=102.75 Aligned_cols=126 Identities=18% Similarity=0.260 Sum_probs=74.7
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc--c-c-------
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR--T-L------- 78 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--~-~------- 78 (211)
.....+++|+++|.+|+|||||+|+|++..........+.+.....+.....+..+.+|||||..+.. . .
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 34567899999999999999999999987753332222223222223333334678999999955331 0 0
Q ss_pred hhhhcc--CCcEEEEEEECCChh-hHHHHHHHHHHHhhh-hccCCCccEEEEeecCCCCCCc
Q 028300 79 TSSYYR--GAQGIILVYDVTRRE-TFTNLSDVWAKEVDL-YSTNQDCVKMLVGNKVDRDSER 136 (211)
Q Consensus 79 ~~~~~~--~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~-~~~~~~~p~viv~nK~Dl~~~~ 136 (211)
...++. ..|++++|..++... ...+. . +.+.+.. +...--.++++|.||+|...+.
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~d~-~-llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYLDL-P-LLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHHHH-H-HHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 112232 578888887766431 22211 1 2222322 2111224799999999986443
No 272
>PRK12740 elongation factor G; Reviewed
Probab=99.53 E-value=8.5e-14 Score=118.15 Aligned_cols=108 Identities=20% Similarity=0.289 Sum_probs=74.7
Q ss_pred EcCCCCcHHHHHHHHhhCCCC--C---CC------------CccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhh
Q 028300 20 IGDSGVGKSSLLVSFISSSVD--D---LS------------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSY 82 (211)
Q Consensus 20 ~G~~~~GKssli~~l~~~~~~--~---~~------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 82 (211)
+|++++|||||+++|+...-. . .. ...+.+.......+...+..+.+|||||+.++...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999643210 0 00 012333333333444456789999999998887777888
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
+..+|++++|+|+++......... |. .+. ..++|+++|+||+|+.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~-~~-~~~----~~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETV-WR-QAE----KYGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHH-HH-HHH----HcCCCEEEEEECCCCC
Confidence 999999999999988654433322 32 222 3478999999999975
No 273
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.53 E-value=3.1e-13 Score=104.69 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=86.2
Q ss_pred CEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHHhhhhccCCCccEEEEee
Q 028300 59 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR----------ETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128 (211)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~viv~n 128 (211)
.....+.+||++|+...+..|..++.+++++++|+|+++- +.+.+....+...+... .-.++|+++++|
T Consensus 158 ~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~-~~~~~pill~~N 236 (317)
T cd00066 158 IKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR-WFANTSIILFLN 236 (317)
T ss_pred ecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc-cccCCCEEEEcc
Confidence 3467899999999999999999999999999999999973 45666666455554432 346899999999
Q ss_pred cCCCCCCc----------------ccCHHHHHHHHHH----------cCCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300 129 KVDRDSER----------------VVSREEGIALAKE----------HGSLFLECSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 129 K~Dl~~~~----------------~v~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
|.|+..++ .-..+.+..+... ..+-+..++|.+..+++.+|+.+.+.+...
T Consensus 237 K~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 237 KKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred ChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 99963211 1123333333321 123357788999999999999988877654
No 274
>PRK13768 GTPase; Provisional
Probab=99.51 E-value=2e-13 Score=102.54 Aligned_cols=115 Identities=18% Similarity=0.126 Sum_probs=71.9
Q ss_pred EEEEEeCCChhhh---ccchhhhccC-----CcEEEEEEECCChhhHHHHHHH-HHHHhhhhccCCCccEEEEeecCCCC
Q 028300 63 KLTIWDTAGQERF---RTLTSSYYRG-----AQGIILVYDVTRRETFTNLSDV-WAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 63 ~~~l~D~~g~~~~---~~~~~~~~~~-----~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
.+.+||+||+.+. +..+..+++. .+++++++|+.......+.... |....... ..++|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhc
Confidence 6889999997653 3333333322 8999999999754433332221 22222211 2479999999999986
Q ss_pred CCcccCHH--HHH------------------------HHHHHcC--CeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300 134 SERVVSRE--EGI------------------------ALAKEHG--SLFLECSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 134 ~~~~v~~~--~~~------------------------~~~~~~~--~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
...+.... ... +..+..+ .+++++|++++.|+++++++|.+.+...
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 54332110 000 1122223 4789999999999999999998877544
No 275
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.50 E-value=1.2e-12 Score=105.28 Aligned_cols=169 Identities=15% Similarity=0.270 Sum_probs=117.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECC--EEEEEEEEeCCChhhhccchhhhccCC---
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAG--KRLKLTIWDTAGQERFRTLTSSYYRGA--- 86 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~~~~~~~~~~~--- 86 (211)
...-.|+|+|..++|||||+.+|.+.+ ...++.+.+|....+.-++ ....+.+|.+.|...+..+....+...
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 345689999999999999999987553 3445666666655554432 235689999988766777666655533
Q ss_pred -cEEEEEEECCChhhHHHHHHHHHHHhh-------------------------hh-------------------------
Q 028300 87 -QGIILVYDVTRRETFTNLSDVWAKEVD-------------------------LY------------------------- 115 (211)
Q Consensus 87 -d~~i~v~d~~~~~s~~~~~~~~~~~~~-------------------------~~------------------------- 115 (211)
-.+++|+|.+.|..+-+-...|...++ .+
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 578899999998764433333544332 00
Q ss_pred -----------ccCCCccEEEEeecCCCCC----Ccc-------cCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 116 -----------STNQDCVKMLVGNKVDRDS----ERV-------VSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 116 -----------~~~~~~p~viv~nK~Dl~~----~~~-------v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
....++|++||++|+|... ... ......+.++..+|+.++.+|++...+++.++..|.
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 0012589999999999632 111 112235666778899999999999999999999999
Q ss_pred HHHHhccch
Q 028300 174 LKIMEVPSL 182 (211)
Q Consensus 174 ~~~~~~~~~ 182 (211)
.++....-.
T Consensus 261 h~l~~~~f~ 269 (472)
T PF05783_consen 261 HRLYGFPFK 269 (472)
T ss_pred HHhccCCCC
Confidence 998876543
No 276
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.49 E-value=1.3e-12 Score=94.67 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=63.4
Q ss_pred EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccE--EEEeecCCCCCCcccC
Q 028300 62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK--MLVGNKVDRDSERVVS 139 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~--viv~nK~Dl~~~~~v~ 139 (211)
....++++.|..-....... -+|.+|.|+|+.+.++.... +. ..+.. ++++||+|+.+.....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~---l~~~~i~vvD~~~~~~~~~~---~~---------~qi~~ad~~~~~k~d~~~~~~~~ 156 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPE---LADLTIFVIDVAAGDKIPRK---GG---------PGITRSDLLVINKIDLAPMVGAD 156 (199)
T ss_pred CCEEEEECCCCCcccccchh---hhCcEEEEEEcchhhhhhhh---hH---------hHhhhccEEEEEhhhcccccccc
Confidence 34566777773221222211 15889999999976553211 11 12223 8999999997532223
Q ss_pred HHHHHHHHHH--cCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300 140 REEGIALAKE--HGSLFLECSAKTRENVEQCFEQLALKIM 177 (211)
Q Consensus 140 ~~~~~~~~~~--~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 177 (211)
.+...+..+. .+++++++|+++|.|++++|++|.+.++
T Consensus 157 ~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 157 LGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3333344443 4578999999999999999999987653
No 277
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.49 E-value=1.2e-12 Score=102.62 Aligned_cols=160 Identities=21% Similarity=0.221 Sum_probs=110.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC--C------C------CCCccceeeEEEE--EEE---CCEEEEEEEEeCCChh
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV--D------D------LSPTIGVDFKIKL--LTV---AGKRLKLTIWDTAGQE 73 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~--~------~------~~~~~~~~~~~~~--~~~---~~~~~~~~l~D~~g~~ 73 (211)
+--+..++-+-.-|||||..+++...- + + .....|.+..... +.+ ++..+.++|+|||||-
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 334677888999999999999974321 1 0 1122344333322 222 4577999999999999
Q ss_pred hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe
Q 028300 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL 153 (211)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~ 153 (211)
+|.......+..+.+.++|+|++..-.-+.+...|+. ...+.-++-|+||+||+..+... ...+.-.-.|++
T Consensus 88 DFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlA------le~~LeIiPViNKIDLP~Adper--vk~eIe~~iGid 159 (603)
T COG0481 88 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLA------LENNLEIIPVLNKIDLPAADPER--VKQEIEDIIGID 159 (603)
T ss_pred ceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHH------HHcCcEEEEeeecccCCCCCHHH--HHHHHHHHhCCC
Confidence 9988888888999999999999975333333322221 23577889999999997654321 222333445654
Q ss_pred ---EEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 154 ---FLECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 154 ---~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
.+.+||++|.||+++++.|++.+..-.
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 799999999999999999999876554
No 278
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.48 E-value=1.6e-12 Score=97.55 Aligned_cols=166 Identities=17% Similarity=0.241 Sum_probs=116.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECC--EEEEEEEEeCCChhhhccchhhhccCC----
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAG--KRLKLTIWDTAGQERFRTLTSSYYRGA---- 86 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~D~~g~~~~~~~~~~~~~~~---- 86 (211)
.--+|+|+|..++||||||.+|-+.+ .+..-.+..|-...+.-+. .-..+.+|=+.|..-+..+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 34579999999999999999998776 4445555555555544433 346788999988776666655554433
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhh---------------------------------------------------
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLY--------------------------------------------------- 115 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--------------------------------------------------- 115 (211)
-.+|++.|++++-.+-+....|...+.++
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 46889999999944333333366544311
Q ss_pred ---------ccCCCccEEEEeecCCCC----CCcc-------cCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHH
Q 028300 116 ---------STNQDCVKMLVGNKVDRD----SERV-------VSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALK 175 (211)
Q Consensus 116 ---------~~~~~~p~viv~nK~Dl~----~~~~-------v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 175 (211)
....++|+++|+||+|.. .+.+ .....++.|+..+|+..+.+|++...+++-++..|.++
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 112468999999999972 1111 11233567777889999999999999999999999998
Q ss_pred HHhcc
Q 028300 176 IMEVP 180 (211)
Q Consensus 176 ~~~~~ 180 (211)
...-.
T Consensus 289 ~yG~~ 293 (473)
T KOG3905|consen 289 SYGFP 293 (473)
T ss_pred hcCcc
Confidence 87654
No 279
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.48 E-value=9.9e-13 Score=102.67 Aligned_cols=120 Identities=16% Similarity=0.179 Sum_probs=84.9
Q ss_pred EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHHhhhhccCCCccEEEEeec
Q 028300 60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR----------ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129 (211)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK 129 (211)
....+.+||++|+...+..|..++.+++++++|+|+++- +.+.+....|...+... .-.++|++|++||
T Consensus 182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~-~~~~~piil~~NK 260 (342)
T smart00275 182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR-WFANTSIILFLNK 260 (342)
T ss_pred CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc-cccCCcEEEEEec
Confidence 446789999999999999999999999999999999973 35666666555555432 3467999999999
Q ss_pred CCCCCCc--------------c-cCHHHHHHHHHH-----c------CCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 130 VDRDSER--------------V-VSREEGIALAKE-----H------GSLFLECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 130 ~Dl~~~~--------------~-v~~~~~~~~~~~-----~------~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
.|+..+. . -..+.+..+... . .+-++.++|.+..++..+|+.+.+.+....
T Consensus 261 ~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 261 IDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 9973210 0 122233222221 1 133577889999999999998888776543
No 280
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.47 E-value=1.8e-12 Score=101.07 Aligned_cols=155 Identities=15% Similarity=0.184 Sum_probs=99.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhC----CCC-----------CCCCccc---eeeEEE-------EEEE-CCEEEEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISS----SVD-----------DLSPTIG---VDFKIK-------LLTV-AGKRLKLTI 66 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~----~~~-----------~~~~~~~---~~~~~~-------~~~~-~~~~~~~~l 66 (211)
-.+-|+|+|+.++|||||||+|.+. ... ..++..| ++..++ .+.. ++....+.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4578999999999999999999987 333 3344445 332222 2222 345678999
Q ss_pred EeCCChhhhcc-------c----------------------hhhhcc-CCcEEEEEE-ECC----ChhhHHHHHHHHHHH
Q 028300 67 WDTAGQERFRT-------L----------------------TSSYYR-GAQGIILVY-DVT----RRETFTNLSDVWAKE 111 (211)
Q Consensus 67 ~D~~g~~~~~~-------~----------------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~~ 111 (211)
+||+|...-.. - ....+. ++|+.|+|. |.+ ..+.+.++...+...
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99999322111 0 233455 899999998 764 123455555557777
Q ss_pred hhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC--CCcHHHHHHHHH
Q 028300 112 VDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT--RENVEQCFEQLA 173 (211)
Q Consensus 112 ~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~--~~gv~~l~~~i~ 173 (211)
++.. ++|+++++|+.|-.... .......+...++++++.+|+.+ ...+..+++.++
T Consensus 176 Lk~~----~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 176 LKEL----NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHhc----CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 7755 99999999999932221 33333455566788888888755 345555555444
No 281
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.47 E-value=3.2e-13 Score=106.40 Aligned_cols=169 Identities=14% Similarity=0.112 Sum_probs=114.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh----ccch-----hh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF----RTLT-----SS 81 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~----~~~~-----~~ 81 (211)
.+..-.++++|.|++|||||++.+.....+ ..|-..++.......++..=..++++||||..+. .+.. ..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradve-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDE-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccc-cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 345668999999999999999998877652 2333333333333344444567889999994321 1211 22
Q ss_pred hccCCcEEEEEEECCCh--hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHH---HHHHHHHcCCeEEE
Q 028300 82 YYRGAQGIILVYDVTRR--ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREE---GIALAKEHGSLFLE 156 (211)
Q Consensus 82 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~---~~~~~~~~~~~~~~ 156 (211)
...---+++|+.|++.. .|+..... +...++.. -.+.|+|+|+||+|+.....+..+. .......-++++++
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~Qvk-LfhsIKpL--FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~ 320 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQVK-LYHSIKPL--FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQ 320 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHHH-HHHHhHHH--hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEE
Confidence 22334689999999974 35555555 34444433 3589999999999998777666543 23333344589999
Q ss_pred eeccCCCcHHHHHHHHHHHHHhccchh
Q 028300 157 CSAKTRENVEQCFEQLALKIMEVPSLL 183 (211)
Q Consensus 157 ~Sa~~~~gv~~l~~~i~~~~~~~~~~~ 183 (211)
+|+.+.+|+.++-....++++..+-..
T Consensus 321 tS~~~eegVm~Vrt~ACe~LLa~RVE~ 347 (620)
T KOG1490|consen 321 TSCVQEEGVMDVRTTACEALLAARVEQ 347 (620)
T ss_pred ecccchhceeeHHHHHHHHHHHHHHHH
Confidence 999999999999999888888776543
No 282
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.47 E-value=1.6e-12 Score=112.85 Aligned_cols=104 Identities=23% Similarity=0.229 Sum_probs=72.8
Q ss_pred EEEEeCCChhhhccchhhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC-
Q 028300 64 LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS- 139 (211)
Q Consensus 64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~- 139 (211)
+.||||||++.|..+....+..+|++++|+|+++ +++++.+. .+. ..++|+++|+||+|+.......
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~-----~lk----~~~iPiIVViNKiDL~~~~~~~~ 598 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN-----ILR----QYKTPFVVAANKIDLIPGWNISE 598 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH-----HHH----HcCCCEEEEEECCCCcccccccc
Confidence 8999999999998877778888999999999987 44444332 222 2368999999999985432210
Q ss_pred -----------HHHHH-H-------H---HHH---------------cCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300 140 -----------REEGI-A-------L---AKE---------------HGSLFLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 140 -----------~~~~~-~-------~---~~~---------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
.+... + + ... ..++++++||++|+|+++++.+|....
T Consensus 599 ~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 599 DEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred chhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 00000 0 0 011 135799999999999999998876543
No 283
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.46 E-value=4.4e-13 Score=114.23 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=79.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC---------------CCCC----CCCccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS---------------SVDD----LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~---------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (211)
+.-.+|+++|+.++|||||+++|+.. ++.. ...+.........+.+++.++.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34579999999999999999999753 1111 1112222222222345677889999999999
Q ss_pred hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
.+|.......++.+|++++|+|+.+.-....... |.. . ...++|.++++||+|..
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~-~~~-~----~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETV-LRQ-A----LKENVKPVLFINKVDRL 151 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHH-HHH-H----HHcCCCEEEEEEChhcc
Confidence 9887777888999999999999887322221111 222 1 13467889999999985
No 284
>PTZ00258 GTP-binding protein; Provisional
Probab=99.46 E-value=2.9e-12 Score=100.74 Aligned_cols=84 Identities=21% Similarity=0.188 Sum_probs=54.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEE--CCE---------------EEEEEEEeCCChhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTV--AGK---------------RLKLTIWDTAGQER 74 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~l~D~~g~~~ 74 (211)
....+|+++|.||+|||||+|+|.+... .....++++.......+ .+. ..++.++|+||...
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 5567999999999999999999987654 22223343333222222 211 23589999999432
Q ss_pred -------hccchhhhccCCcEEEEEEECC
Q 028300 75 -------FRTLTSSYYRGAQGIILVYDVT 96 (211)
Q Consensus 75 -------~~~~~~~~~~~~d~~i~v~d~~ 96 (211)
........++.+|++++|+|+.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112234567899999999974
No 285
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.45 E-value=6.4e-13 Score=97.45 Aligned_cols=173 Identities=18% Similarity=0.175 Sum_probs=100.4
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcc----------------------------------ceeeEE-
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTI----------------------------------GVDFKI- 52 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~----------------------------------~~~~~~- 52 (211)
+.....++.|+++|..|||||||+.+|..+-+....|.- |.+-..
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 556678899999999999999999999754331111100 000000
Q ss_pred --------------EEEEECCEEEEEEEEeCCChhhh------ccchhhhccC--CcEEEEEEECCC---hhhHHHHHHH
Q 028300 53 --------------KLLTVAGKRLKLTIWDTAGQERF------RTLTSSYYRG--AQGIILVYDVTR---RETFTNLSDV 107 (211)
Q Consensus 53 --------------~~~~~~~~~~~~~l~D~~g~~~~------~~~~~~~~~~--~d~~i~v~d~~~---~~s~~~~~~~ 107 (211)
..+.-....+...++||||+-+. .......+.. .-+++||+|... +..|-.-.-+
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 00000112356889999996532 2233333333 356778888543 3333333322
Q ss_pred HHHHhhhhccCCCccEEEEeecCCCCCCccc-----CHHHHHHHHH--------------------H-cCCeEEEeeccC
Q 028300 108 WAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-----SREEGIALAK--------------------E-HGSLFLECSAKT 161 (211)
Q Consensus 108 ~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-----~~~~~~~~~~--------------------~-~~~~~~~~Sa~~ 161 (211)
--.++. ..+.|+++++||+|+.+..-. +.+..++... . .++..+-+|+.+
T Consensus 173 AcSily----ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~t 248 (366)
T KOG1532|consen 173 ACSILY----KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVT 248 (366)
T ss_pred HHHHHH----hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEeccc
Confidence 333333 458999999999998654210 0011111000 0 145689999999
Q ss_pred CCcHHHHHHHHHHHHHhccchhc
Q 028300 162 RENVEQCFEQLALKIMEVPSLLE 184 (211)
Q Consensus 162 ~~gv~~l~~~i~~~~~~~~~~~~ 184 (211)
|.|++++|..+.+.+.+....+.
T Consensus 249 G~G~ddf~~av~~~vdEy~~~yk 271 (366)
T KOG1532|consen 249 GEGFDDFFTAVDESVDEYEEEYK 271 (366)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998887776654433
No 286
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.44 E-value=1.3e-12 Score=101.60 Aligned_cols=161 Identities=20% Similarity=0.209 Sum_probs=83.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCc--cceeeEEEEEEECCEEEEEEEEeCCChhhh-----ccchhhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV--DDLSPT--IGVDFKIKLLTVAGKRLKLTIWDTAGQERF-----RTLTSSY 82 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~ 82 (211)
..+++|+|+|.+|+|||||||.|.+-.. +...++ ..++.....+....-+ .+.+||+||..-. ..+-...
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 3578999999999999999999976443 222222 2233444444433222 5899999994321 1223345
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC-------CCcccCHHHH----HHHHH---
Q 028300 83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD-------SERVVSREEG----IALAK--- 148 (211)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~-------~~~~v~~~~~----~~~~~--- 148 (211)
+...|.+|++.+-. |......+...+... ++|+++|-||+|.. .++....+.. ++.+.
T Consensus 112 ~~~yD~fiii~s~r----f~~ndv~La~~i~~~----gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 112 FYRYDFFIIISSER----FTENDVQLAKEIQRM----GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp GGG-SEEEEEESSS------HHHHHHHHHHHHT----T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCCC----CchhhHHHHHHHHHc----CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 67789888776632 223322244455443 89999999999961 1222222222 22221
Q ss_pred -HcCC---eEEEeeccCC--CcHHHHHHHHHHHHHhccc
Q 028300 149 -EHGS---LFLECSAKTR--ENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 149 -~~~~---~~~~~Sa~~~--~gv~~l~~~i~~~~~~~~~ 181 (211)
..++ ++|-+|+.+- .++..+.+.+...+...++
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence 1233 4899999875 4677788887777766654
No 287
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.44 E-value=8.2e-13 Score=98.69 Aligned_cols=96 Identities=21% Similarity=0.254 Sum_probs=76.1
Q ss_pred hhhccchhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC
Q 028300 73 ERFRTLTSSYYRGAQGIILVYDVTRRE-TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG 151 (211)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~ 151 (211)
+++..+.+.+++++|++++|||++++. ++..+.. |+..+.. .++|++||+||+||.+...+..+....+ ...+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r-~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g 97 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDR-FLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-RNIG 97 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHH-HHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-HHCC
Confidence 567777888999999999999999887 7877766 7765542 5899999999999976554443334333 4578
Q ss_pred CeEEEeeccCCCcHHHHHHHHHH
Q 028300 152 SLFLECSAKTRENVEQCFEQLAL 174 (211)
Q Consensus 152 ~~~~~~Sa~~~~gv~~l~~~i~~ 174 (211)
.+++++||+++.|++++|+.+..
T Consensus 98 ~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 98 YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CeEEEEecCCchhHHHHHhhhcC
Confidence 89999999999999999987753
No 288
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=1.5e-12 Score=104.30 Aligned_cols=168 Identities=21% Similarity=0.186 Sum_probs=112.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCC----------------------C--------CCCCCccceeeEEEEEEECCEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSS----------------------V--------DDLSPTIGVDFKIKLLTVAGKR 61 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~----------------------~--------~~~~~~~~~~~~~~~~~~~~~~ 61 (211)
...+..+++|+.++|||||+.+++..- | .......|.++.....+++...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 367899999999999999999987211 0 1112345677777777887778
Q ss_pred EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChh---hHH---HHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300 62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE---TFT---NLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~ 135 (211)
..++|+|+||+..|..-......++|+.++|+|++..+ .|+ ..++ ....++. ..-..++|++||+|+...
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~---Lgi~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRS---LGISQLIVAINKMDLVSW 330 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHH---cCcceEEEEeecccccCc
Confidence 88999999999999888888889999999999998642 121 1111 2222222 224567899999999766
Q ss_pred cccCHHHHH----HHH-HHcC-----CeEEEeeccCCCcHHHH-HHHHHHHHHhccchh
Q 028300 136 RVVSREEGI----ALA-KEHG-----SLFLECSAKTRENVEQC-FEQLALKIMEVPSLL 183 (211)
Q Consensus 136 ~~v~~~~~~----~~~-~~~~-----~~~~~~Sa~~~~gv~~l-~~~i~~~~~~~~~~~ 183 (211)
.+-..++++ .|. +..| +.|++||+..|+|+-.. -+.-+..+++.....
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL 389 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKIEQENELSQWYKGPTLL 389 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccccccchhhhhhhcCChHH
Confidence 554444433 222 2333 35999999999998544 222333444444433
No 289
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.43 E-value=3.5e-12 Score=96.72 Aligned_cols=151 Identities=19% Similarity=0.147 Sum_probs=104.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCCC--------------------------------CCCccceeeEEEEEEEC
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDD--------------------------------LSPTIGVDFKIKLLTVA 58 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~ 58 (211)
....+|.+.+|...=||||||-+|+...-.. .....|.+.......+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 3456899999999999999999998433100 00134566766666777
Q ss_pred CEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc
Q 028300 59 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV 138 (211)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v 138 (211)
..+.+|.+-|||||+.|....-.....+|+.|+++|+...- ++..+ ....+.. ...-..+++++||+||.+..+-
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTr--RHs~I~s--LLGIrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTR--RHSFIAS--LLGIRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhH--HHHHHHH--HhCCcEEEEEEeeecccccCHH
Confidence 78889999999999999877777788899999999986531 11111 1111111 1233467888999999776554
Q ss_pred CHHH----HHHHHHHcCC---eEEEeeccCCCcHH
Q 028300 139 SREE----GIALAKEHGS---LFLECSAKTRENVE 166 (211)
Q Consensus 139 ~~~~----~~~~~~~~~~---~~~~~Sa~~~~gv~ 166 (211)
..+. ...|+.++++ .++++||+.|++|-
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 4333 3455666664 59999999999874
No 290
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.43 E-value=6.7e-12 Score=100.64 Aligned_cols=167 Identities=22% Similarity=0.260 Sum_probs=120.8
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG 85 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (211)
.++..++.+...++|+.++|||.|++.+++..+ ..+..+....+....+...+....+.+-|.+-. ....+...- ..
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~ 495 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AA 495 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ce
Confidence 556778889999999999999999999999888 444455556666556666677778888888754 322222222 67
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe-EEEeeccCCCc
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL-FLECSAKTREN 164 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~g 164 (211)
+|++.++||.+++.++......+... ......|.++|++|+|+.+..+.....-.++..+++++ .+.+|..+...
T Consensus 496 cDv~~~~YDsS~p~sf~~~a~v~~~~----~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s 571 (625)
T KOG1707|consen 496 CDVACLVYDSSNPRSFEYLAEVYNKY----FDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS 571 (625)
T ss_pred eeeEEEecccCCchHHHHHHHHHHHh----hhccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC
Confidence 89999999999999988877632222 23478999999999999765432222225678888875 66777775333
Q ss_pred HHHHHHHHHHHHHhcc
Q 028300 165 VEQCFEQLALKIMEVP 180 (211)
Q Consensus 165 v~~l~~~i~~~~~~~~ 180 (211)
.++|..|......-.
T Consensus 572 -~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 572 -NELFIKLATMAQYPH 586 (625)
T ss_pred -chHHHHHHHhhhCCC
Confidence 889999988766554
No 291
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.41 E-value=7.1e-12 Score=92.67 Aligned_cols=142 Identities=16% Similarity=0.238 Sum_probs=85.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
.......|+++|++|+|||||++.+..... .......|+ . .+ ....+..+.++|+||.. .. ....+..+|+
T Consensus 35 ~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDv 106 (225)
T cd01882 35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADL 106 (225)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HH-HHHHHHhcCE
Confidence 355678899999999999999999986532 212222222 1 11 12245678899999854 22 2334678999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccE-EEEeecCCCCCCcc-cC--HHHHHH-HHHH--cCCeEEEeeccC
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK-MLVGNKVDRDSERV-VS--REEGIA-LAKE--HGSLFLECSAKT 161 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-viv~nK~Dl~~~~~-v~--~~~~~~-~~~~--~~~~~~~~Sa~~ 161 (211)
+++++|++........ . +...+.. .+.|. ++|+||.|+.+... .. ....+. +... .+.+++.+||++
T Consensus 107 VllviDa~~~~~~~~~-~-i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~ 180 (225)
T cd01882 107 VLLLIDASFGFEMETF-E-FLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIV 180 (225)
T ss_pred EEEEEecCcCCCHHHH-H-HHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc
Confidence 9999999864332221 1 3333332 35675 45999999853321 11 111211 2211 246799999998
Q ss_pred CCcH
Q 028300 162 RENV 165 (211)
Q Consensus 162 ~~gv 165 (211)
+..+
T Consensus 181 ~~~~ 184 (225)
T cd01882 181 HGRY 184 (225)
T ss_pred CCCC
Confidence 7443
No 292
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.41 E-value=4.9e-12 Score=99.08 Aligned_cols=160 Identities=19% Similarity=0.234 Sum_probs=112.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCC--CCCCC-------------CccceeeEEEEEEECCEEEEEEEEeCCChhhhccch
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSS--VDDLS-------------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLT 79 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 79 (211)
-+|+|+-+..-|||||+..|+.+. |.... ...|.+.-.+.-.+...++.+.++|||||.+|....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 479999999999999999998654 32211 233555555555555677899999999999999999
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC-HHHHHHHHH-------HcC
Q 028300 80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS-REEGIALAK-------EHG 151 (211)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~-~~~~~~~~~-------~~~ 151 (211)
...+.=.|++++++|+.+.- ....+..+.+-+ ..+.+-++|+||+|.+..+... .++...++. +++
T Consensus 86 ERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl-----~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL-----ALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred hhhhhhcceEEEEEEcccCC-CCchhhhHHHHH-----HcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCC
Confidence 99999999999999998741 222332222222 3466668899999987665322 122333332 356
Q ss_pred CeEEEeeccCC----------CcHHHHHHHHHHHHHhcc
Q 028300 152 SLFLECSAKTR----------ENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 152 ~~~~~~Sa~~~----------~gv~~l~~~i~~~~~~~~ 180 (211)
+|++..|+.+| .++.-+|+.|++.+..-.
T Consensus 160 FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 160 FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 78999999886 567888888888766544
No 293
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.39 E-value=5.1e-12 Score=97.62 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=65.7
Q ss_pred EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC-
Q 028300 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS- 139 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~- 139 (211)
++.+.|+||+|...-.. .....+|.++++.+....+.+..... ... ...-++|+||+|+.......
T Consensus 148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~----gi~------E~aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK----GIM------ELADLIVINKADGDNKTAARR 214 (332)
T ss_pred CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh----hhh------hhhheEEeehhcccchhHHHH
Confidence 46789999999653222 24667999999987555544433322 011 11238999999986543211
Q ss_pred -HHHHHHHHHH-------cCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300 140 -REEGIALAKE-------HGSLFLECSAKTRENVEQCFEQLALKIM 177 (211)
Q Consensus 140 -~~~~~~~~~~-------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 177 (211)
..+....... +..|++.+||.++.|++++++.|.+.+.
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1122222221 2357999999999999999999988654
No 294
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.38 E-value=7.1e-12 Score=91.63 Aligned_cols=56 Identities=25% Similarity=0.146 Sum_probs=41.2
Q ss_pred CccEEEEeecCCCCCCcccCHHHHHHHHHHc--CCeEEEeeccCCCcHHHHHHHHHHH
Q 028300 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEH--GSLFLECSAKTRENVEQCFEQLALK 175 (211)
Q Consensus 120 ~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~~ 175 (211)
..|.++++||+|+.+.............+.. .++++++||+++.|++++|+++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4677999999999654332233344444443 3789999999999999999999874
No 295
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.38 E-value=2.4e-11 Score=94.64 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=52.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEE--EEEECCE---------------EEEEEEEeCCChhhh--
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIK--LLTVAGK---------------RLKLTIWDTAGQERF-- 75 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~l~D~~g~~~~-- 75 (211)
++|+++|.|++|||||+|+|.+... .....++++.... .+.+.+. ..++.++|+||...-
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 7899999999999999999998773 2222233332222 1222221 135899999994321
Q ss_pred -----ccchhhhccCCcEEEEEEECC
Q 028300 76 -----RTLTSSYYRGAQGIILVYDVT 96 (211)
Q Consensus 76 -----~~~~~~~~~~~d~~i~v~d~~ 96 (211)
.......++++|++++|+|+.
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 112233467899999999985
No 296
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=2.4e-11 Score=92.01 Aligned_cols=163 Identities=21% Similarity=0.211 Sum_probs=98.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCC----CCC--CCCccceeeEE----EEE-----EECCEEEEEEEEeCCChhhhcc
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSS----VDD--LSPTIGVDFKI----KLL-----TVAGKRLKLTIWDTAGQERFRT 77 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~----~~~--~~~~~~~~~~~----~~~-----~~~~~~~~~~l~D~~g~~~~~~ 77 (211)
..++|+++|+..||||||.+++.... |+. ...+.+.+... ... .-.++..++.++|+||+...-.
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 34999999999999999999997543 211 11112221111 000 1134567889999999976655
Q ss_pred chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC--HHH-HHHHHHH-----
Q 028300 78 LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS--REE-GIALAKE----- 149 (211)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~--~~~-~~~~~~~----- 149 (211)
.......-.|..++|+|+...-.-..+.-.++-. ..-...++|+||+|...+.+.. .++ .+...+.
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~------~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGE------LLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhh------hhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 4555555669999999988643222222111111 1233468889999986553221 111 1222221
Q ss_pred --cCCeEEEeeccCC----CcHHHHHHHHHHHHHhccc
Q 028300 150 --HGSLFLECSAKTR----ENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 150 --~~~~~~~~Sa~~~----~gv~~l~~~i~~~~~~~~~ 181 (211)
-+.|++++|+..| .++.++.+.+-.++.+-++
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence 1378999999999 7777777777776665544
No 297
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.36 E-value=9.5e-12 Score=83.31 Aligned_cols=113 Identities=34% Similarity=0.401 Sum_probs=78.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCC-CC-CccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDD-LS-PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
+||+++|..|+|||+|+.++....+.. +. ++.+ +........+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998776632 21 2222 222334456778999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 166 (211)
++.++.++++.+ |...+... ...++|.++++||.|+.+...+...+. ..++++|++++.++.
T Consensus 54 ~~~~~~~s~~~~---~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK---NVPEVLVG-NKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH---hHHHHHhc-CCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 999999988765 55555433 245689999999999844333333322 235667888888874
No 298
>PTZ00416 elongation factor 2; Provisional
Probab=99.36 E-value=3.5e-12 Score=110.20 Aligned_cols=116 Identities=22% Similarity=0.221 Sum_probs=77.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC---------------CccceeeEE--EEEEEC--------CEEEEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLS---------------PTIGVDFKI--KLLTVA--------GKRLKLTI 66 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~---------------~~~~~~~~~--~~~~~~--------~~~~~~~l 66 (211)
+.-.+|+++|+.++|||||+++|+...-.... ...+.+... ....+. +.+..+.|
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 44559999999999999999999863210000 011222221 122222 12577999
Q ss_pred EeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
+||||+.+|.......++.+|++|+|+|+.+.-..... ..|. .+. ..++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~~-~~~----~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVLR-QAL----QERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHHH-HHH----HcCCCEEEEEEChhhh
Confidence 99999998877778889999999999998874322222 2132 222 3468999999999985
No 299
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.36 E-value=3.6e-12 Score=110.26 Aligned_cols=117 Identities=19% Similarity=0.207 Sum_probs=79.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCC--C----------CC---CccceeeEE--EEEEE--------------CC
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVD--D----------LS---PTIGVDFKI--KLLTV--------------AG 59 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~--~----------~~---~~~~~~~~~--~~~~~--------------~~ 59 (211)
.++-.+|+|+|+.++|||||+++|+...-. . .. ...+.+... ....+ .+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345569999999999999999999854310 0 00 011222221 11222 12
Q ss_pred EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
.+..+.|+||||+.+|.......++.+|+.|+|+|+.+.-....... |... ...++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~-~~~~-----~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETV-LRQA-----LGERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHH-HHHH-----HHCCCCEEEEEECCccc
Confidence 36788999999999998778888899999999999987533222221 3332 23588999999999985
No 300
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.36 E-value=4.1e-13 Score=99.63 Aligned_cols=113 Identities=17% Similarity=0.178 Sum_probs=56.8
Q ss_pred EEEEEeCCChhhhccchhhhc--------cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 63 KLTIWDTAGQERFRTLTSSYY--------RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
.+.++|||||.++-..+...- ...-++++++|..-..+......-++..+... ...+.|.+.|+||+|+..
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence 688999999887654333322 34457888999664333222221122221111 235899999999999966
Q ss_pred Ccc---c----------------CHHHHHHHHHH---cC-C-eEEEeeccCCCcHHHHHHHHHHHH
Q 028300 135 ERV---V----------------SREEGIALAKE---HG-S-LFLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 135 ~~~---v----------------~~~~~~~~~~~---~~-~-~~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
... . .......++.. ++ . .++.+|+.+++|+++++..|-+++
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 220 0 00111111221 22 3 699999999999999998876654
No 301
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.33 E-value=3.8e-11 Score=102.77 Aligned_cols=116 Identities=22% Similarity=0.264 Sum_probs=76.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC--CCC----------CC---ccceeeEEE----EEEECCEEEEEEEEeCCCh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV--DDL----------SP---TIGVDFKIK----LLTVAGKRLKLTIWDTAGQ 72 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~~~----------~~---~~~~~~~~~----~~~~~~~~~~~~l~D~~g~ 72 (211)
++-.+|+++|+.++|||||+.+|+...- ... .+ ..+.+.... .+...+.+..+.|+||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 3455799999999999999999985331 100 00 011222111 1223445788999999999
Q ss_pred hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
.+|.......++.+|++|+|+|+...-... ....|.... ..+.|.++++||+|..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~-----~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQAL-----RERVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHH-----HcCCCeEEEEECchhh
Confidence 988777888899999999999988743222 222133222 2256789999999975
No 302
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=1.6e-11 Score=92.16 Aligned_cols=166 Identities=17% Similarity=0.143 Sum_probs=108.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCC----------------------ccceeeEEEEEEEC------CEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP----------------------TIGVDFKIKLLTVA------GKRLK 63 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~----------------------~~~~~~~~~~~~~~------~~~~~ 63 (211)
..+++|.++|+..-|||||..+|.+--...... ....+.+...-... .--..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 568999999999999999999997432111000 00000111111111 12357
Q ss_pred EEEEeCCChhhhccchhhhccCCcEEEEEEECCCh----hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc-
Q 028300 64 LTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR----ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV- 138 (211)
Q Consensus 64 ~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v- 138 (211)
+.|.|.|||+-.-........-.|+.++|++++++ ++-+.+.. +..+ .-..++|+=||+|+...+..
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~A--leIi------gik~iiIvQNKIDlV~~E~Al 159 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMA--LEII------GIKNIIIVQNKIDLVSRERAL 159 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHH--Hhhh------ccceEEEEecccceecHHHHH
Confidence 88999999987655555555667999999999974 44444432 1222 24467999999999644322
Q ss_pred -CHHHHHHHHHH---cCCeEEEeeccCCCcHHHHHHHHHHHHHhccchhcc
Q 028300 139 -SREEGIALAKE---HGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLEE 185 (211)
Q Consensus 139 -~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~~~ 185 (211)
+.+++++|.+- .++|++++||..+.+++.+++.|.+.+....+....
T Consensus 160 E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~ 210 (415)
T COG5257 160 ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDK 210 (415)
T ss_pred HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCC
Confidence 33455566552 468999999999999999999998888766554433
No 303
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.29 E-value=2.7e-11 Score=93.37 Aligned_cols=104 Identities=13% Similarity=0.125 Sum_probs=63.7
Q ss_pred EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH
Q 028300 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR 140 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~ 140 (211)
++.+.|+||+|.-... ...+..+|.++++.+.... +++.. +...+ ..+|.++|+||+|+........
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~-~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQG-IKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHH-HHHHH------hhhccEEEEEcccccchhHHHH
Confidence 4678899999843221 2345667888888554433 33332 22111 3567799999999865432111
Q ss_pred HHH------HHHHH---HcCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300 141 EEG------IALAK---EHGSLFLECSAKTRENVEQCFEQLALKIM 177 (211)
Q Consensus 141 ~~~------~~~~~---~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 177 (211)
... ..+.. .+..+++.+||+++.|+++++++|.+.+.
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 000 11111 12346999999999999999999988644
No 304
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.28 E-value=2.6e-11 Score=85.76 Aligned_cols=63 Identities=25% Similarity=0.302 Sum_probs=44.1
Q ss_pred EEEEEeCCChhh----hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecC
Q 028300 63 KLTIWDTAGQER----FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130 (211)
Q Consensus 63 ~~~l~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~ 130 (211)
.+.|+|+||... ....+..++..+|++|+|.+++...+-.+... +....... ...+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~~----~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDPD----KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTTT----CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcCC----CCeEEEEEcCC
Confidence 478999999543 33557778899999999999998655444444 55555433 34489999985
No 305
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=3.2e-11 Score=99.17 Aligned_cols=162 Identities=20% Similarity=0.162 Sum_probs=106.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCCccceeeEEEEE--------EEC----CEEEEEEEEeCCCh
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-----DDLSPTIGVDFKIKLL--------TVA----GKRLKLTIWDTAGQ 72 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-----~~~~~~~~~~~~~~~~--------~~~----~~~~~~~l~D~~g~ 72 (211)
..=+..-++|+|+..+|||-|+..+.+... .......|-++....- .-. ..---+.++||||+
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh 550 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH 550 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc
Confidence 344566789999999999999999987553 1122223333332110 000 01124678999999
Q ss_pred hhhccchhhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc------------
Q 028300 73 ERFRTLTSSYYRGAQGIILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV------------ 137 (211)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~------------ 137 (211)
+.|.++.......+|..|+|+|+-. +++++.+.. + ...+.|+||++||+|..-.+.
T Consensus 551 EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~l-----L----R~rktpFivALNKiDRLYgwk~~p~~~i~~~lk 621 (1064)
T KOG1144|consen 551 ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINL-----L----RMRKTPFIVALNKIDRLYGWKSCPNAPIVEALK 621 (1064)
T ss_pred hhhhhhhhccccccceEEEEeehhccCCcchhHHHHH-----H----HhcCCCeEEeehhhhhhcccccCCCchHHHHHH
Confidence 9999999999999999999999764 555555432 2 245899999999999632110
Q ss_pred -----cCH-------HHHHHHHHH-cC-------------CeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 138 -----VSR-------EEGIALAKE-HG-------------SLFLECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 138 -----v~~-------~~~~~~~~~-~~-------------~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
+.. ..+.+|+.+ ++ +.++++||.+|+||.+|+-+|++......
T Consensus 622 kQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 622 KQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 000 001122221 11 23689999999999999999988665544
No 306
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.28 E-value=1.3e-11 Score=88.40 Aligned_cols=147 Identities=23% Similarity=0.316 Sum_probs=92.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh-----ccchhhhccCC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF-----RTLTSSYYRGA 86 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~~~~ 86 (211)
.-||+++|.+|+||||+-..++.+.. +...+....++..-...+- +...+.+||++|++.+ .......+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhh-hhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 45899999999999999777765443 3333333333332222222 2367899999998854 22345688999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhc-cCCCccEEEEeecCCCCCCcc--cCHHH----HHHHHHHcCCeEEEeec
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYS-TNQDCVKMLVGNKVDRDSERV--VSREE----GIALAKEHGSLFLECSA 159 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~p~viv~nK~Dl~~~~~--v~~~~----~~~~~~~~~~~~~~~Sa 159 (211)
+++++|||++..+-..++.. +..-++... ..+...++....|+|+...+. ....+ .+.+....+..++.+|.
T Consensus 83 ~vli~vFDves~e~~~D~~~-yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHY-YQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeeccchhhhhhHHH-HHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 99999999998765555555 555443321 256778899999999964432 22211 22222334455777766
Q ss_pred cCC
Q 028300 160 KTR 162 (211)
Q Consensus 160 ~~~ 162 (211)
.+.
T Consensus 162 wDe 164 (295)
T KOG3886|consen 162 WDE 164 (295)
T ss_pred hhH
Confidence 553
No 307
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.27 E-value=6e-11 Score=89.52 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=49.9
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEE--EEEECCE---------------EEEEEEEeCCChhhh----
Q 028300 17 ILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIK--LLTVAGK---------------RLKLTIWDTAGQERF---- 75 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~l~D~~g~~~~---- 75 (211)
|+++|.|+||||||+|+|.+... .....++++.... .+.+.+. ...+.++|+||.-.-
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 58999999999999999998776 2222223222211 1222221 235899999994321
Q ss_pred cc---chhhhccCCcEEEEEEECC
Q 028300 76 RT---LTSSYYRGAQGIILVYDVT 96 (211)
Q Consensus 76 ~~---~~~~~~~~~d~~i~v~d~~ 96 (211)
.. .....++++|++++|+|+.
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 11 1233467899999999974
No 308
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=9.7e-11 Score=91.50 Aligned_cols=153 Identities=18% Similarity=0.124 Sum_probs=110.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCC--CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVD--DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
.|+..|+-.-|||||+..+.+...+ ....-.|++.....+.....+..+.|+|.||++++-......+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4788899999999999999987652 23334566666666666666678999999999998777777888999999999
Q ss_pred ECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH---HcCCeEEEeeccCCCcHHH
Q 028300 94 DVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK---EHGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 94 d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~---~~~~~~~~~Sa~~~~gv~~ 167 (211)
++++ +++.+.+.. +.++. -...+||+||+|..++..+.. ...+... ...++++.+|+.+|.||++
T Consensus 82 ~~deGl~~qtgEhL~i--Ldllg------i~~giivltk~D~~d~~r~e~-~i~~Il~~l~l~~~~i~~~s~~~g~GI~~ 152 (447)
T COG3276 82 AADEGLMAQTGEHLLI--LDLLG------IKNGIIVLTKADRVDEARIEQ-KIKQILADLSLANAKIFKTSAKTGRGIEE 152 (447)
T ss_pred eCccCcchhhHHHHHH--HHhcC------CCceEEEEeccccccHHHHHH-HHHHHHhhcccccccccccccccCCCHHH
Confidence 9964 445555442 22222 223499999999865432221 1122222 2346789999999999999
Q ss_pred HHHHHHHHHH
Q 028300 168 CFEQLALKIM 177 (211)
Q Consensus 168 l~~~i~~~~~ 177 (211)
+.+.|.+...
T Consensus 153 Lk~~l~~L~~ 162 (447)
T COG3276 153 LKNELIDLLE 162 (447)
T ss_pred HHHHHHHhhh
Confidence 9999998775
No 309
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.22 E-value=5.2e-11 Score=83.59 Aligned_cols=55 Identities=22% Similarity=0.113 Sum_probs=43.7
Q ss_pred cEEEEeecCCCCCCcccCHHHHHHHHHHc--CCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300 122 VKMLVGNKVDRDSERVVSREEGIALAKEH--GSLFLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 122 p~viv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
.=++|+||.|+.+.-..+.+....-+++. +.+++++|+++|.|++++++|+....
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 33899999999877666666666555553 47899999999999999999987654
No 310
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.21 E-value=2.7e-10 Score=86.62 Aligned_cols=141 Identities=18% Similarity=0.262 Sum_probs=75.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC-----------CccceeeEEEEEEECCEEEEEEEEeCCChhh-------
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLS-----------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQER------- 74 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~------- 74 (211)
-.++|.|+|.+|+|||||||.|++....... .+.........+.-.+..+.+.++||||..+
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4689999999999999999999987652111 1112233333344467788999999999211
Q ss_pred -----------hccch---------hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 75 -----------FRTLT---------SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 75 -----------~~~~~---------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
|.... ...=...|++||.++.+.. .+..+.-..++.+ ...+++|-|+.|+|...
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~L-----s~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRL-----SKRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHH-----TTTSEEEEEESTGGGS-
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHh-----cccccEEeEEecccccC
Confidence 11000 1111456999999998753 1222221133333 34678899999999865
Q ss_pred CcccC--HHHHHHHHHHcCCeEEEeec
Q 028300 135 ERVVS--REEGIALAKEHGSLFLECSA 159 (211)
Q Consensus 135 ~~~v~--~~~~~~~~~~~~~~~~~~Sa 159 (211)
..+.. ...+.......++.+|....
T Consensus 157 ~~el~~~k~~i~~~l~~~~I~~f~f~~ 183 (281)
T PF00735_consen 157 PEELQAFKQRIREDLEENNIKIFDFPE 183 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTT--S-----
T ss_pred HHHHHHHHHHHHHHHHHcCceeecccc
Confidence 44332 12234444556776655433
No 311
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.21 E-value=2.2e-10 Score=94.35 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=71.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeE-EEEEEECCEEEEEEEEeCCChhhhc-------cc---
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFK-IKLLTVAGKRLKLTIWDTAGQERFR-------TL--- 78 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~-------~~--- 78 (211)
-+..++|+++|.+|+||||++|.+++... .......+++.. ...... .+..+.++||||..+.. ..
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~i--dG~~L~VIDTPGL~dt~~dq~~neeILk~ 192 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV--QGVKIRVIDTPGLKSSASDQSKNEKILSS 192 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEE--CCceEEEEECCCCCccccchHHHHHHHHH
Confidence 35568999999999999999999998764 222222233322 112222 34678999999955321 11
Q ss_pred hhhhcc--CCcEEEEEEECCChhh-HHHHHHHHHHHhh-hhccCCCccEEEEeecCCCCCC
Q 028300 79 TSSYYR--GAQGIILVYDVTRRET-FTNLSDVWAKEVD-LYSTNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 79 ~~~~~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~-~~~~~~~~p~viv~nK~Dl~~~ 135 (211)
...++. .+|++|+|..++.... .++. . ++..+. .+...--..+|||+|+.|..++
T Consensus 193 Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~-~-aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 193 VKKFIKKNPPDIVLYVDRLDMQTRDSNDL-P-LLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHHhcCCCCEEEEEEeCCCccccHHHH-H-HHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 122333 5799999998763322 1222 2 223322 2211223467999999998653
No 312
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.20 E-value=1e-09 Score=84.62 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=81.3
Q ss_pred CEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhh----------HHHHHHHHHHHhhhhccCCCccEEEEee
Q 028300 59 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRET----------FTNLSDVWAKEVDLYSTNQDCVKMLVGN 128 (211)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~~~~~~~~~~~p~viv~n 128 (211)
-....+.++|.+|+...+.-|.+++.+++++|+|+++++-+. +.+....+...+... --.+.++++++|
T Consensus 192 ~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~-~F~~tsiiLFLN 270 (354)
T KOG0082|consen 192 IKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK-WFANTSIILFLN 270 (354)
T ss_pred eCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc-ccccCcEEEEee
Confidence 345788999999999888899999999999999999886332 222233222232222 335789999999
Q ss_pred cCCCCCCc--------------cc-CHHHHHHHHHH----------cCCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 129 KVDRDSER--------------VV-SREEGIALAKE----------HGSLFLECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 129 K~Dl~~~~--------------~v-~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
|.|+-+++ .. ..+++..+... ..+-+..+.|.+..+|+.+|..+.+.+....
T Consensus 271 K~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 271 KKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred cHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 99983321 11 22333333221 1233566788889999999999988776653
No 313
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.7e-10 Score=88.22 Aligned_cols=127 Identities=20% Similarity=0.241 Sum_probs=89.2
Q ss_pred CCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEE------------------
Q 028300 3 SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRL------------------ 62 (211)
Q Consensus 3 ~~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------------ 62 (211)
|+.-....++.+..|.++|+-..||||||+.|+..++ ....+.+.+++....+.-+....
T Consensus 47 sp~l~d~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~ 126 (532)
T KOG1954|consen 47 SPALEDPDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLN 126 (532)
T ss_pred cccccCcccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhh
Confidence 4444567788899999999999999999999999998 34555565655554443322111
Q ss_pred ---------------------EEEEEeCCCh-----------hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHH
Q 028300 63 ---------------------KLTIWDTAGQ-----------ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAK 110 (211)
Q Consensus 63 ---------------------~~~l~D~~g~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 110 (211)
.++++|+||. -.|......++..+|.++++||+-..+--.++.. .+.
T Consensus 127 ~FG~aflnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~-vi~ 205 (532)
T KOG1954|consen 127 KFGNAFLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKR-VID 205 (532)
T ss_pred hhHHHHHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHH-HHH
Confidence 5889999992 2345567889999999999999776554444444 344
Q ss_pred HhhhhccCCCccEEEEeecCCCCC
Q 028300 111 EVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 111 ~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
.++.+ .=.+-||+||+|..+
T Consensus 206 aLkG~----EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 206 ALKGH----EDKIRVVLNKADQVD 225 (532)
T ss_pred HhhCC----cceeEEEeccccccC
Confidence 44322 334678889999744
No 314
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1e-10 Score=98.28 Aligned_cols=118 Identities=18% Similarity=0.217 Sum_probs=88.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC--CC---------------CCCccceeeEEEEEEECCE-EEEEEEEeCCCh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV--DD---------------LSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQ 72 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~--~~---------------~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~ 72 (211)
.++--+|+++|+.++|||||..+++...- .. .....|.+..+........ ++.++|+|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 55677999999999999999999974321 11 1123356666666666566 599999999999
Q ss_pred hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
-+|.......++-+|+.++|+|+.+.-....-.. |++.. ..++|.++++||+|...
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv-~rqa~-----~~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETV-WRQAD-----KYGVPRILFVNKMDRLG 142 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHH-HHHHh-----hcCCCeEEEEECccccc
Confidence 9999989999999999999999987432222222 55443 45899999999999743
No 315
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.15 E-value=3.1e-11 Score=88.77 Aligned_cols=147 Identities=21% Similarity=0.251 Sum_probs=82.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCCccc----------------eeeEEEEEEECC-----
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-----------DDLSPTIG----------------VDFKIKLLTVAG----- 59 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-----------~~~~~~~~----------------~~~~~~~~~~~~----- 59 (211)
.+.++|+|.|+||+|||||++.|...-. ++..|..| ...+.+.+--.+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGl 106 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGL 106 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCc
Confidence 3568999999999999999999862110 11111111 122222222111
Q ss_pred -------------EEEEEEEEeCCC--hhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEE
Q 028300 60 -------------KRLKLTIWDTAG--QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKM 124 (211)
Q Consensus 60 -------------~~~~~~l~D~~g--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~v 124 (211)
.++.+.|++|.| +.+. ....-+|.+++|......+.++-+..-+++. +=+
T Consensus 107 s~~t~~~v~ll~aaG~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi----------aDi 171 (266)
T PF03308_consen 107 SRATRDAVRLLDAAGFDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIMEI----------ADI 171 (266)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-----------SE
T ss_pred cHhHHHHHHHHHHcCCCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhhhh----------ccE
Confidence 134677888876 3332 2345589999999987766555544423333 228
Q ss_pred EEeecCCCCCCcccCHHHHHHHHHH-------cCCeEEEeeccCCCcHHHHHHHHHH
Q 028300 125 LVGNKVDRDSERVVSREEGIALAKE-------HGSLFLECSAKTRENVEQCFEQLAL 174 (211)
Q Consensus 125 iv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~~~Sa~~~~gv~~l~~~i~~ 174 (211)
+|+||+|....+... .+....... +..|++.+||.++.|++++++.|.+
T Consensus 172 ~vVNKaD~~gA~~~~-~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~ 227 (266)
T PF03308_consen 172 FVVNKADRPGADRTV-RDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE 227 (266)
T ss_dssp EEEE--SHHHHHHHH-HHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred EEEeCCChHHHHHHH-HHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence 999999964332221 122222221 2347999999999999999988776
No 316
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=8.5e-10 Score=85.04 Aligned_cols=84 Identities=23% Similarity=0.277 Sum_probs=53.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC--CCCC-----CccceeeEEEE--------EE--ECCEEEEEEEEeCCChh---
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV--DDLS-----PTIGVDFKIKL--------LT--VAGKRLKLTIWDTAGQE--- 73 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~--~~~~-----~~~~~~~~~~~--------~~--~~~~~~~~~l~D~~g~~--- 73 (211)
.++++|+|.||+|||||+|.+..... .+|. |..|..+.... +. -......+.|+|++|.-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 57899999999999999999997664 1221 11121111100 00 01235678999999821
Q ss_pred ----hhccchhhhccCCcEEEEEEECCC
Q 028300 74 ----RFRTLTSSYYRGAQGIILVYDVTR 97 (211)
Q Consensus 74 ----~~~~~~~~~~~~~d~~i~v~d~~~ 97 (211)
...+....-++.+|+++.|+++.+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 222334445688999999999773
No 317
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.12 E-value=1.1e-09 Score=81.17 Aligned_cols=69 Identities=25% Similarity=0.223 Sum_probs=44.2
Q ss_pred EEEEEEeCCChhh-------------hccchhhhccC-CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEe
Q 028300 62 LKLTIWDTAGQER-------------FRTLTSSYYRG-AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVG 127 (211)
Q Consensus 62 ~~~~l~D~~g~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~ 127 (211)
..+.|+|+||... ...+...++++ .+++++|+|+...-.-.+... +.+.+. ..+.|+++|+
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~-ia~~ld----~~~~rti~Vi 199 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK-LAKEVD----PQGERTIGVI 199 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH-HHHHHH----HcCCcEEEEE
Confidence 4688999999632 12234556674 468999998875322222222 333333 4588999999
Q ss_pred ecCCCCCC
Q 028300 128 NKVDRDSE 135 (211)
Q Consensus 128 nK~Dl~~~ 135 (211)
||.|..++
T Consensus 200 TK~D~~~~ 207 (240)
T smart00053 200 TKLDLMDE 207 (240)
T ss_pred ECCCCCCc
Confidence 99998653
No 318
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.12 E-value=4.9e-09 Score=76.46 Aligned_cols=90 Identities=21% Similarity=0.168 Sum_probs=63.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh-------ccchhhhcc
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF-------RTLTSSYYR 84 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~ 84 (211)
.-..||+++|.|.+|||||+..+..... ....-..++...+...+...+..+++.|+||.-+- ........+
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEee
Confidence 3456999999999999999999886543 22233344555555555556678899999994322 223455678
Q ss_pred CCcEEEEEEECCChhhHH
Q 028300 85 GAQGIILVYDVTRRETFT 102 (211)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~ 102 (211)
.+|.++.|.|++..+.-.
T Consensus 139 taDlilMvLDatk~e~qr 156 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQR 156 (364)
T ss_pred cccEEEEEecCCcchhHH
Confidence 899999999999765443
No 319
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.1e-09 Score=81.44 Aligned_cols=142 Identities=17% Similarity=0.125 Sum_probs=98.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhh-------CC---C-----CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFIS-------SS---V-----DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~-------~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (211)
....++|+.+|+.+-|||||..++.. .. + .......|.+.....+.++.....+..+|+|||.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 34678999999999999999887751 11 1 111124567777777777777788889999999999
Q ss_pred ccchhhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCc-cEEEEeecCCCCCCccc---CHHHHHHHHH
Q 028300 76 RTLTSSYYRGAQGIILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDC-VKMLVGNKVDRDSERVV---SREEGIALAK 148 (211)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~-p~viv~nK~Dl~~~~~v---~~~~~~~~~~ 148 (211)
-........++|+.|+|+++++ |++-+.+.- . ..-+. .+++++||+|+.+..+. -..+.+.+..
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLl-----a----rqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs 159 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHILL-----A----RQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhh-----h----hhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHH
Confidence 7666677789999999999998 444444431 1 12245 56778899999764332 2344566677
Q ss_pred HcCC-----eEEEeeccC
Q 028300 149 EHGS-----LFLECSAKT 161 (211)
Q Consensus 149 ~~~~-----~~~~~Sa~~ 161 (211)
.+++ |++.-|++.
T Consensus 160 ~y~f~gd~~Pii~gSal~ 177 (394)
T COG0050 160 EYGFPGDDTPIIRGSALK 177 (394)
T ss_pred HcCCCCCCcceeechhhh
Confidence 7765 466666654
No 320
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.11 E-value=3.2e-10 Score=84.68 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=92.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCCccc----------------eeeEEEEEEE------
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-----------DDLSPTIG----------------VDFKIKLLTV------ 57 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-----------~~~~~~~~----------------~~~~~~~~~~------ 57 (211)
..+...|+|.|.||+|||||+..|...-. ++..|..| .....+...-
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG 127 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG 127 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence 45667999999999999999999862211 11111111 0111111100
Q ss_pred ------------CCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEE
Q 028300 58 ------------AGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKML 125 (211)
Q Consensus 58 ------------~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~vi 125 (211)
+-.++.+.|++|.|--..+. ....-+|.+++|.-..-.+.++.+..-++++-+ ++
T Consensus 128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD----------i~ 194 (323)
T COG1703 128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD----------II 194 (323)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh----------ee
Confidence 11234677888887432221 234458999999888777777766653443333 89
Q ss_pred EeecCCCCCCcccCHHHH--HHHHH----H--cCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300 126 VGNKVDRDSERVVSREEG--IALAK----E--HGSLFLECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 126 v~nK~Dl~~~~~v~~~~~--~~~~~----~--~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
|+||.|.........+.. ..+.. . +.-|++.+||..++|++++++.|.+...-
T Consensus 195 vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 195 VINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred eEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 999999643322111111 11111 1 23469999999999999999998775443
No 321
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.1e-09 Score=79.34 Aligned_cols=172 Identities=20% Similarity=0.243 Sum_probs=107.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh-cc--chhhhccCCcEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF-RT--LTSSYYRGAQGI 89 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-~~--~~~~~~~~~d~~ 89 (211)
.+.+|+++|...+||||+-+..+....+........+.....-.+.+.-+.+.+||+||+..+ .. -....++++.++
T Consensus 26 ~kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 26 MKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CCceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 446799999999999999998776655443332222222111233344577999999997654 22 246678999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc-cCH------HHHHHHHHH----cCCeEEEee
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV-VSR------EEGIALAKE----HGSLFLECS 158 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~-v~~------~~~~~~~~~----~~~~~~~~S 158 (211)
++|+|+.+. ..+.+...-...-+.+...+++-+-+.+.|.|...++- +.. .....++.. ..+.|+-+|
T Consensus 106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS 184 (347)
T KOG3887|consen 106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS 184 (347)
T ss_pred EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence 999998874 23333332222234455578889999999999754321 111 111111111 223467677
Q ss_pred ccCCCcHHHHHHHHHHHHHhccchhccc
Q 028300 159 AKTRENVEQCFEQLALKIMEVPSLLEEG 186 (211)
Q Consensus 159 a~~~~gv~~l~~~i~~~~~~~~~~~~~~ 186 (211)
..+. .+-+.|..+++.+..+-+..+..
T Consensus 185 IyDH-SIfEAFSkvVQkLipqLptLEnl 211 (347)
T KOG3887|consen 185 IYDH-SIFEAFSKVVQKLIPQLPTLENL 211 (347)
T ss_pred ecch-HHHHHHHHHHHHHhhhchhHHHH
Confidence 6654 57888999999888776665544
No 322
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.07 E-value=3.8e-10 Score=85.25 Aligned_cols=56 Identities=25% Similarity=0.202 Sum_probs=40.5
Q ss_pred CccEEEEeecCCCCCCcccCHHHHHHHHHH--cCCeEEEeeccCCCcHHHHHHHHHHH
Q 028300 120 DCVKMLVGNKVDRDSERVVSREEGIALAKE--HGSLFLECSAKTRENVEQCFEQLALK 175 (211)
Q Consensus 120 ~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~gv~~l~~~i~~~ 175 (211)
..+-++|+||+|+.+......+......+. ..++++.+|++++.|++++.+||.++
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 456699999999965322223333333443 25789999999999999999999774
No 323
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=1.2e-09 Score=85.41 Aligned_cols=118 Identities=15% Similarity=0.201 Sum_probs=85.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCC--C-------------------CCCCCccceeeEEEEEEECCEEEEEEEEeCC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSS--V-------------------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~--~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 70 (211)
.+.-..+|+-+|.+|||||..+|+--. . -......|....+-.+.++..+..++|.|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 344567999999999999999986211 0 0011244677777788888889999999999
Q ss_pred ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~ 135 (211)
||++|..-.-..+.-+|..+.|+|+... ++.-...+....+ ..++|++-++||.|....
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcr----lR~iPI~TFiNKlDR~~r 148 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCR----LRDIPIFTFINKLDREGR 148 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHh----hcCCceEEEeeccccccC
Confidence 9999977666677889999999998763 1111111333333 459999999999997543
No 324
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.06 E-value=3.4e-10 Score=85.20 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=95.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCC--CccceeeEEEEEEECCEEEEEEEEeCCCh---------hhhccc
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLS--PTIGVDFKIKLLTVAGKRLKLTIWDTAGQ---------ERFRTL 78 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~---------~~~~~~ 78 (211)
.+...-|+++|-.|+|||||+++|..... +... .|..++.. ...+.. +..+.+.||.|. ..|+.
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h--~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~A- 250 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLH--SAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQA- 250 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhh--hccCCC-CcEEEEeechhhhhhCcHHHHHHHHH-
Confidence 34556799999999999999999995543 2222 22223322 223322 234667799883 22333
Q ss_pred hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCc----cEEEEeecCCCCCCcccCHHHHHHHHHHcCCeE
Q 028300 79 TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC----VKMLVGNKVDRDSERVVSREEGIALAKEHGSLF 154 (211)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~----p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 154 (211)
....+..+|.++.|.|++.|+.-..... ....+... .-+.. .++=|-||+|..+.. +.. ..++ .
T Consensus 251 TLeeVaeadlllHvvDiShP~ae~q~e~-Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~-~e~-------E~n~--~ 318 (410)
T KOG0410|consen 251 TLEEVAEADLLLHVVDISHPNAEEQRET-VLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDE-VEE-------EKNL--D 318 (410)
T ss_pred HHHHHhhcceEEEEeecCCccHHHHHHH-HHHHHHhc-CCCcHHHHhHHHhhcccccccccc-Ccc-------ccCC--c
Confidence 2334578999999999999976555444 33333322 11122 345566777764322 111 1122 6
Q ss_pred EEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300 155 LECSAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 155 ~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
+.+|+.+|.|++++.+.+-+.+.....
T Consensus 319 v~isaltgdgl~el~~a~~~kv~~~t~ 345 (410)
T KOG0410|consen 319 VGISALTGDGLEELLKAEETKVASETT 345 (410)
T ss_pred cccccccCccHHHHHHHHHHHhhhhhe
Confidence 789999999999999988887766543
No 325
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.04 E-value=8e-10 Score=77.21 Aligned_cols=95 Identities=17% Similarity=0.109 Sum_probs=65.0
Q ss_pred ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEE
Q 028300 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFL 155 (211)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 155 (211)
+.+.+..++++|++++|+|++++....+. . +...+ ...++|+++|+||+|+.+.... .....+....+.+++
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~-l~~~~----~~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~ 74 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR-K-LERYV----LELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVV 74 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH-H-HHHHH----HhCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEE
Confidence 44567788899999999999876432221 1 22222 2236899999999998543221 111123334567899
Q ss_pred EeeccCCCcHHHHHHHHHHHHHh
Q 028300 156 ECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 156 ~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
.+||+++.|++++++.+.+.+..
T Consensus 75 ~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 75 YVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEEccccccHHHHHHHHHHHHhh
Confidence 99999999999999999887643
No 326
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.03 E-value=5.6e-09 Score=83.52 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=79.7
Q ss_pred EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHHhhhhccCCCccEEEEeec
Q 028300 60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR----------ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129 (211)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK 129 (211)
....+.++|++|+...+.-|..++.+++++|||+++++- ..+.+....|....... .-.+.|++|++||
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~-~~~~~~iil~lnK 312 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNP-WFKNTPIILFLNK 312 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSG-GGTTSEEEEEEE-
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCc-ccccCceEEeeec
Confidence 456789999999988888999999999999999997742 23566666455555433 3458999999999
Q ss_pred CCCCC------C----------cc--cCHHHHHHHHHH------------cCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300 130 VDRDS------E----------RV--VSREEGIALAKE------------HGSLFLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 130 ~Dl~~------~----------~~--v~~~~~~~~~~~------------~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
.|+.. . .. -..+.+..+... ..+.+..++|.+...+..+|+.+.+.+
T Consensus 313 ~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 313 IDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 99621 0 01 123444444332 112366788888889999998887643
No 327
>PRK00098 GTPase RsgA; Reviewed
Probab=99.01 E-value=1.7e-09 Score=83.29 Aligned_cols=88 Identities=24% Similarity=0.213 Sum_probs=65.2
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300 81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK 160 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 160 (211)
..+.++|.+++|+|+.+++........|+..+. ..++|+++|+||+|+.+... ............+.+++.+||+
T Consensus 76 ~iaaniD~vllV~d~~~p~~~~~~idr~L~~~~----~~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~ 150 (298)
T PRK00098 76 LIAANVDQAVLVFAAKEPDFSTDLLDRFLVLAE----ANGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAK 150 (298)
T ss_pred ceeecCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCC
Confidence 346899999999999988766665554665554 24789999999999953322 1223334455678899999999
Q ss_pred CCCcHHHHHHHHH
Q 028300 161 TRENVEQCFEQLA 173 (211)
Q Consensus 161 ~~~gv~~l~~~i~ 173 (211)
++.|++++++.+.
T Consensus 151 ~g~gi~~L~~~l~ 163 (298)
T PRK00098 151 EGEGLDELKPLLA 163 (298)
T ss_pred CCccHHHHHhhcc
Confidence 9999999987764
No 328
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.00 E-value=1.4e-09 Score=76.06 Aligned_cols=56 Identities=25% Similarity=0.367 Sum_probs=44.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (211)
..++|+++|.||+|||||+|+|.+.......+.+|++.....+.... .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 46789999999999999999999887767777788777655554432 367899998
No 329
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.00 E-value=2.5e-09 Score=85.62 Aligned_cols=163 Identities=22% Similarity=0.386 Sum_probs=117.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
.++|++|+|..++|||+|+++++.+.+.....+.+..+. ..+..++.+..+.+.|.+|... ..+...+|++|+|
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~k-kE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv 102 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFK-KEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV 102 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccce-eeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence 568999999999999999999999988554444444433 3445567778888888888432 2344568999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC--CCcccCHHHHHHHHHH-cCCeEEEeeccCCCcHHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD--SERVVSREEGIALAKE-HGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~--~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~ 169 (211)
|.+.+.+++..+..+... +..+.....+|+++++++.-.. ..+.+......++..+ ....||++.+..|.++...|
T Consensus 103 f~~~d~~s~q~v~~l~~~-l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf 181 (749)
T KOG0705|consen 103 FSVEDEQSFQAVQALAHE-MSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF 181 (749)
T ss_pred EEeccccCHHHHHHHHhh-cccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence 999999999998873333 3333236678888888876542 2333344444444444 44679999999999999999
Q ss_pred HHHHHHHHhccch
Q 028300 170 EQLALKIMEVPSL 182 (211)
Q Consensus 170 ~~i~~~~~~~~~~ 182 (211)
..+...+...+..
T Consensus 182 ~~~~~k~i~~~~~ 194 (749)
T KOG0705|consen 182 QEVAQKIVQLRKY 194 (749)
T ss_pred HHHHHHHHHHHhh
Confidence 9988877666433
No 330
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.00 E-value=1.2e-09 Score=74.98 Aligned_cols=54 Identities=28% Similarity=0.384 Sum_probs=43.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (211)
+++++|.+|+|||||+|++.+..........+.+.....+.++. .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 89999999999999999999887755666666666666666544 5799999995
No 331
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.99 E-value=3.6e-09 Score=76.33 Aligned_cols=94 Identities=19% Similarity=0.061 Sum_probs=65.2
Q ss_pred hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-----HH
Q 028300 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-----KE 149 (211)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-----~~ 149 (211)
+..++..+++.+|++++|+|++++..- |...+.. ...++|+++|+||+|+.+... .......+. ..
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~------~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS------LIPRLRL--FGGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc------cchhHHH--hcCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhh
Confidence 567788889999999999999875421 2222211 234689999999999864332 222222222 22
Q ss_pred cCC---eEEEeeccCCCcHHHHHHHHHHHHH
Q 028300 150 HGS---LFLECSAKTRENVEQCFEQLALKIM 177 (211)
Q Consensus 150 ~~~---~~~~~Sa~~~~gv~~l~~~i~~~~~ 177 (211)
.+. +++.+||+++.|+++++++|.+.+.
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 332 5899999999999999999988764
No 332
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.99 E-value=1.5e-09 Score=76.76 Aligned_cols=57 Identities=28% Similarity=0.386 Sum_probs=46.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (211)
...++|+++|.||+|||||+|++.+.......+.+|++.....+.+. ..+.++|+||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD---KKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC---CCEEEEECcC
Confidence 44589999999999999999999988776677778888776666553 2578999998
No 333
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=3.8e-09 Score=86.39 Aligned_cols=115 Identities=26% Similarity=0.342 Sum_probs=82.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC----------C------ccceeeEE--EEEEE---CCEEEEEEEEeCC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLS----------P------TIGVDFKI--KLLTV---AGKRLKLTIWDTA 70 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~----------~------~~~~~~~~--~~~~~---~~~~~~~~l~D~~ 70 (211)
....+|+++|+-+.|||+|+.-|.....+... . ..|..... .+... .+..+-+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 56789999999999999999998866542211 0 11222222 22222 3467889999999
Q ss_pred ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132 (211)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl 132 (211)
||-.|.......++.+|++++++|+.+.-.+..-+. ++ +....+.|+++|+||.|.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-----ik-haiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-----IK-HAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-----HH-HHHhccCcEEEEEehhHH
Confidence 999998888889999999999999988654433322 22 223568999999999995
No 334
>PRK12289 GTPase RsgA; Reviewed
Probab=98.98 E-value=3e-09 Score=83.23 Aligned_cols=92 Identities=23% Similarity=0.150 Sum_probs=65.6
Q ss_pred cchhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEE
Q 028300 77 TLTSSYYRGAQGIILVYDVTRRE-TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFL 155 (211)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 155 (211)
.+.+..+.++|.+++|+|+.++. ....+.. |+.... ..++|++||+||+|+...... .........++.+++
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR-~L~~a~----~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~ 153 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSR-FLVKAE----STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPL 153 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHH-HHHHHH----HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEE
Confidence 34455689999999999999875 3333333 544432 358999999999999643222 222333456788999
Q ss_pred EeeccCCCcHHHHHHHHHHH
Q 028300 156 ECSAKTRENVEQCFEQLALK 175 (211)
Q Consensus 156 ~~Sa~~~~gv~~l~~~i~~~ 175 (211)
.+||.++.|++++++.+...
T Consensus 154 ~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 154 FISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEcCCCCCHHHHhhhhccc
Confidence 99999999999999887653
No 335
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.95 E-value=4.8e-09 Score=80.38 Aligned_cols=89 Identities=18% Similarity=0.118 Sum_probs=66.1
Q ss_pred hhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEe
Q 028300 79 TSSYYRGAQGIILVYDVTRRE-TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLEC 157 (211)
Q Consensus 79 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 157 (211)
....+.++|.+++|+|+.++. ++..+.. |+..+.. .++|+++|+||+|+.+... ...........+.+++.+
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr-~L~~~~~----~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~v 144 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDR-YLVAAEA----AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAV 144 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHH-HHHHHHH----cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEE
Confidence 344588999999999999887 6666665 6655543 4789999999999965421 122233344577899999
Q ss_pred eccCCCcHHHHHHHHHH
Q 028300 158 SAKTRENVEQCFEQLAL 174 (211)
Q Consensus 158 Sa~~~~gv~~l~~~i~~ 174 (211)
|++++.|+++++..+..
T Consensus 145 SA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 145 SAKTGEGLDELREYLKG 161 (287)
T ss_pred ECCCCccHHHHHhhhcc
Confidence 99999999998887653
No 336
>PRK12288 GTPase RsgA; Reviewed
Probab=98.93 E-value=1e-08 Score=80.25 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=66.2
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc-CHHHHHHHHHHcCCeEEEeecc
Q 028300 82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-SREEGIALAKEHGSLFLECSAK 160 (211)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-~~~~~~~~~~~~~~~~~~~Sa~ 160 (211)
...++|.+++|++.+...++..+.. |+.... ..++|.+||+||+|+.+.... ............+.+++++||+
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr-~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDR-YLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHH-HHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4578999999999988878887777 655443 357899999999999654321 1122233445678899999999
Q ss_pred CCCcHHHHHHHHHH
Q 028300 161 TRENVEQCFEQLAL 174 (211)
Q Consensus 161 ~~~gv~~l~~~i~~ 174 (211)
++.|++++++.|..
T Consensus 192 tg~GideL~~~L~~ 205 (347)
T PRK12288 192 TGEGLEELEAALTG 205 (347)
T ss_pred CCcCHHHHHHHHhh
Confidence 99999999988865
No 337
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=7.2e-08 Score=74.61 Aligned_cols=145 Identities=19% Similarity=0.279 Sum_probs=85.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCC--------CCccceeeEEEEEEE--CCEEEEEEEEeCCChhh-------
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDL--------SPTIGVDFKIKLLTV--AGKRLKLTIWDTAGQER------- 74 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~------- 74 (211)
...+++.++|..|.|||||||.|+...+... .+............+ ++-.+.++++||||.-+
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~ 98 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNC 98 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccccccc
Confidence 4568999999999999999999998865221 111122223333333 45667889999999211
Q ss_pred -----------hc-------cchhhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 75 -----------FR-------TLTSSYY--RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 75 -----------~~-------~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
|+ .+.+.-+ ..+++++|.+..+.. .+..+.-..+..+ ...+.++-|+.|+|...
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l-----~~~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKL-----SKKVNLIPVIAKADTLT 172 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHH-----hccccccceeeccccCC
Confidence 11 0111122 267899999997753 1222222122222 34667788888999865
Q ss_pred CcccCH--HHHHHHHHHcCCeEEEeeccCC
Q 028300 135 ERVVSR--EEGIALAKEHGSLFLECSAKTR 162 (211)
Q Consensus 135 ~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~ 162 (211)
..++.. ..+.+....+++++|....-..
T Consensus 173 ~~El~~~K~~I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 173 KDELNQFKKRIRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred HHHHHHHHHHHHHHHHHcCcceecCCCCcc
Confidence 544322 3344455567777766655544
No 338
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.86 E-value=5.9e-08 Score=74.64 Aligned_cols=139 Identities=19% Similarity=0.257 Sum_probs=82.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCC-C----------CCCccceeeEEEEEEECCEEEEEEEEeCCChhhh---cc
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVD-D----------LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF---RT 77 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---~~ 77 (211)
...++|.++|+.|+|||||+|.|++.... . ..++.........+.-++-.+.++++||||.-++ ..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 56899999999999999999999987431 1 1122223333333344566788999999993211 11
Q ss_pred chh-------------------------hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300 78 LTS-------------------------SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132 (211)
Q Consensus 78 ~~~-------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl 132 (211)
.|. ..=..+++++|.+..+.. .+..+.-..+..+ ...+-+|=|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~l-----s~~vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRL-----SKRVNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHH-----hcccCeeeeeecccc
Confidence 111 111356899999987753 2333322233332 235566777889998
Q ss_pred CCCcccC--HHHHHHHHHHcCCeEEE
Q 028300 133 DSERVVS--REEGIALAKEHGSLFLE 156 (211)
Q Consensus 133 ~~~~~v~--~~~~~~~~~~~~~~~~~ 156 (211)
....+.. .+.+.+....+++++|.
T Consensus 175 lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 175 LTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 6544332 23344455567777764
No 339
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.85 E-value=1e-08 Score=72.72 Aligned_cols=58 Identities=22% Similarity=0.374 Sum_probs=46.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (211)
...++++++|.+|+|||||++++.+..+....+..+++.....+.++ ..+.+|||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 45579999999999999999999988775666666777776666554 45789999994
No 340
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.83 E-value=2.8e-07 Score=72.43 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=93.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCccce----------eeEEEEEEE-CCEEEEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV---------------DDLSPTIGV----------DFKIKLLTV-AGKRLKLTI 66 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~---------------~~~~~~~~~----------~~~~~~~~~-~~~~~~~~l 66 (211)
-.+=|+|+||..+||||||++|..... ...++..|. -.....+.+ ++-.+++++
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 356789999999999999999973221 111111121 122234444 456789999
Q ss_pred EeCCCh--------hhh------ccch---------------hhhcc-CC-cEEEEEEECC----ChhhHHHHHHHHHHH
Q 028300 67 WDTAGQ--------ERF------RTLT---------------SSYYR-GA-QGIILVYDVT----RRETFTNLSDVWAKE 111 (211)
Q Consensus 67 ~D~~g~--------~~~------~~~~---------------~~~~~-~~-d~~i~v~d~~----~~~s~~~~~~~~~~~ 111 (211)
+|+.|. .+. .+-| +..+. ++ =++++.-|.+ .++.+.++.......
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 999881 100 0001 11111 12 2455555543 256677777767777
Q ss_pred hhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCC--CcHHHHHHHHH
Q 028300 112 VDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTR--ENVEQCFEQLA 173 (211)
Q Consensus 112 ~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~--~gv~~l~~~i~ 173 (211)
++.. ++|++|++|-.+-. ..-......++..+++++++.+++.+- ..+..+++.++
T Consensus 176 Lk~i----gKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 176 LKEI----GKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHHh----CCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence 7765 99999999998732 223445566777789999988888653 45555554443
No 341
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.83 E-value=1.4e-08 Score=70.92 Aligned_cols=56 Identities=27% Similarity=0.377 Sum_probs=43.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (211)
...+++++|.+++|||||++++.+.....+.++.+++.....+..+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 45789999999999999999999776666677777765543333322 689999998
No 342
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.83 E-value=1.2e-08 Score=77.81 Aligned_cols=58 Identities=22% Similarity=0.394 Sum_probs=47.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (211)
...++|+++|.||+|||||+|+|.+.........+|++.....+.+.. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 457899999999999999999999887666667778777766666532 4789999996
No 343
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=2.8e-08 Score=76.49 Aligned_cols=156 Identities=18% Similarity=0.224 Sum_probs=94.7
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC------------------------CccceeeEEEEEEEC----
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS------------------------PTIGVDFKIKLLTVA---- 58 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~------------------------~~~~~~~~~~~~~~~---- 58 (211)
|....-.++|++++|.-.+|||||+..|..++.++.. ...|.+.....+.+.
T Consensus 160 Pd~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~t 239 (591)
T KOG1143|consen 160 PDSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMT 239 (591)
T ss_pred CCcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhccc
Confidence 4445567899999999999999999988765542211 111221111111111
Q ss_pred ------CEEEEEEEEeCCChhhhccchhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecC
Q 028300 59 ------GKRLKLTIWDTAGQERFRTLTSSYYR--GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130 (211)
Q Consensus 59 ------~~~~~~~l~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~ 130 (211)
....-++|+|++|+..|.......+. ..|...+|+++...-.... +. -+-++ ...++|++++++|+
T Consensus 240 aEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rE-HLgl~----~AL~iPfFvlvtK~ 313 (591)
T KOG1143|consen 240 AEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-RE-HLGLI----AALNIPFFVLVTKM 313 (591)
T ss_pred HHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HH-HHHHH----HHhCCCeEEEEEee
Confidence 12346889999999998765544444 3488889998876422111 11 11122 24589999999999
Q ss_pred CCCCCcc------------------------cCHHHHHHHHHHc----CCeEEEeeccCCCcHHHH
Q 028300 131 DRDSERV------------------------VSREEGIALAKEH----GSLFLECSAKTRENVEQC 168 (211)
Q Consensus 131 Dl~~~~~------------------------v~~~~~~~~~~~~----~~~~~~~Sa~~~~gv~~l 168 (211)
|+..... ...+++...+.+. -.|+|.+|+..|+|++-+
T Consensus 314 Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 314 DLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred ccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 9854411 1122232222222 247999999999998643
No 344
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.82 E-value=1.8e-08 Score=77.29 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=47.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (211)
...++|+++|.||+|||||+|+|.+.......+.+|++.....+.... .+.++||||.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence 456899999999999999999999887766677888887766655533 5789999995
No 345
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.79 E-value=6.2e-08 Score=74.87 Aligned_cols=164 Identities=17% Similarity=0.158 Sum_probs=97.0
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC-Cc--------------cceeeEEEEEEECC--------------
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-PT--------------IGVDFKIKLLTVAG-------------- 59 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~-~~--------------~~~~~~~~~~~~~~-------------- 59 (211)
...+..+.|+++|+.+.|||||+-.|.-+..+.-. .+ ...+.....+-+++
T Consensus 112 ~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE 191 (527)
T COG5258 112 EEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAE 191 (527)
T ss_pred cCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHH
Confidence 34677899999999999999999988755442111 00 01111111222211
Q ss_pred -------EEEEEEEEeCCChhhhcc-chhh-hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecC
Q 028300 60 -------KRLKLTIWDTAGQERFRT-LTSS-YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130 (211)
Q Consensus 60 -------~~~~~~l~D~~g~~~~~~-~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~ 130 (211)
.+..+.|+|+.||+.|-. ..+. +-.+.|..++++.+++.-+-- -.+.+... .....|++++.||+
T Consensus 192 ~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-----tkEHLgi~-~a~~lPviVvvTK~ 265 (527)
T COG5258 192 KAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-----TKEHLGIA-LAMELPVIVVVTKI 265 (527)
T ss_pred HhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-----hhHhhhhh-hhhcCCEEEEEEec
Confidence 123578999999998743 3333 345779999999999852211 12222221 34589999999999
Q ss_pred CCCCCcccC--HHHHHHH----------------------HHHc---CCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300 131 DRDSERVVS--REEGIAL----------------------AKEH---GSLFLECSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 131 Dl~~~~~v~--~~~~~~~----------------------~~~~---~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
|+.+.+... .+++... +.+. =+|+|.+|+.+|.|++- +..+...+...
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl-L~e~f~~Lp~r 340 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL-LDEFFLLLPKR 340 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH-HHHHHHhCCcc
Confidence 986543211 0111111 1111 25799999999999864 44444444433
No 346
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.79 E-value=7.6e-09 Score=76.51 Aligned_cols=156 Identities=17% Similarity=0.095 Sum_probs=91.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCCh----------hhhcc
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ----------ERFRT 77 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~ 77 (211)
..+...+++++|.+++|||+|+|.+..... ....+..|.+.....+.. .-.+.++|.||. .++..
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v---~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV---GKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec---cceEEEEecCCcccccCCccCcchHhH
Confidence 356778999999999999999999987664 333345565555444433 346788899991 12233
Q ss_pred chhhhccCC---cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc----cCHHHHHHHHH--
Q 028300 78 LTSSYYRGA---QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV----VSREEGIALAK-- 148 (211)
Q Consensus 78 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~----v~~~~~~~~~~-- 148 (211)
+...++-+- =-+++.+|++-+- .......+..+. ..++|+.+|+||+|...... .....++....
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i--~~~D~~~i~~~g----e~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l 282 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPI--QPTDNPEIAWLG----ENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGL 282 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCC--CCCChHHHHHHh----hcCCCeEEeeehhhhhhhccccccCccccceeehhhc
Confidence 333333222 2345566655431 111111333333 45999999999999742211 01111111111
Q ss_pred -----HcCCeEEEeeccCCCcHHHHHHHHHH
Q 028300 149 -----EHGSLFLECSAKTRENVEQCFEQLAL 174 (211)
Q Consensus 149 -----~~~~~~~~~Sa~~~~gv~~l~~~i~~ 174 (211)
....|.+.+|+.++.|++++.-.|.+
T Consensus 283 ~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 283 IRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cccceeccCCceeeecccccCceeeeeehhh
Confidence 12245778999999999988766554
No 347
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=2.7e-07 Score=67.12 Aligned_cols=154 Identities=20% Similarity=0.253 Sum_probs=87.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-C-C--------CCCccceeeEEEEEEECCEEEEEEEEeCCChhhh---ccc
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-D-D--------LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF---RTL 78 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~-~--------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~---~~~ 78 (211)
.-.++|.|+|.+|.|||||+|.++.... . . +..|.........+.-.+-..+++++||||.-++ +..
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 4578999999999999999999975443 1 1 1112222222223333455678899999993221 111
Q ss_pred hhh-----------------------hc--cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 79 TSS-----------------------YY--RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 79 ~~~-----------------------~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
|.. .+ ..++.++|.+..+.. ++..+.-.+++.+- .-+-++-|+.|+|-.
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt-----~vvNvvPVIakaDtl 197 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLT-----EVVNVVPVIAKADTL 197 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHh-----hhheeeeeEeecccc
Confidence 111 11 245788888887753 23333222333322 223456677799964
Q ss_pred C--CcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300 134 S--ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171 (211)
Q Consensus 134 ~--~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 171 (211)
. ++..-.+.+++-...+++.+++-.+.+..-=+..++.
T Consensus 198 TleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~ 237 (336)
T KOG1547|consen 198 TLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLND 237 (336)
T ss_pred cHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHH
Confidence 2 3333334455556678888888777665544444443
No 348
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.75 E-value=2.1e-08 Score=72.38 Aligned_cols=55 Identities=22% Similarity=0.427 Sum_probs=43.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC--------CCCCCccceeeEEEEEEECCEEEEEEEEeCCC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV--------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (211)
..+++++|.+|+|||||+|+|.+... ......+|++.....+.+.. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 46899999999999999999997543 23445567888777776643 478999998
No 349
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.74 E-value=2.3e-08 Score=77.67 Aligned_cols=58 Identities=22% Similarity=0.366 Sum_probs=50.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (211)
...++++|+|-|++|||||||+|.+.......+.+|++.....+.++.. +.++||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 3458899999999999999999999888888888899988888877654 889999994
No 350
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.72 E-value=6.9e-08 Score=76.31 Aligned_cols=95 Identities=23% Similarity=0.240 Sum_probs=68.0
Q ss_pred hhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHH----HHH
Q 028300 72 QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGI----ALA 147 (211)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~----~~~ 147 (211)
.++|..+...+...++++++|+|+.+... . |.+.+..+ ..+.|+++|+||+|+.+. .+..+... +++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s-~~~~l~~~--~~~~piilV~NK~DLl~k-~~~~~~~~~~l~~~~ 120 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG-----S-LIPELKRF--VGGNPVLLVGNKIDLLPK-SVNLSKIKEWMKKRA 120 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC-----C-ccHHHHHH--hCCCCEEEEEEchhhCCC-CCCHHHHHHHHHHHH
Confidence 45677778888889999999999977531 1 33333333 136799999999999653 23333333 335
Q ss_pred HHcCC---eEEEeeccCCCcHHHHHHHHHHH
Q 028300 148 KEHGS---LFLECSAKTRENVEQCFEQLALK 175 (211)
Q Consensus 148 ~~~~~---~~~~~Sa~~~~gv~~l~~~i~~~ 175 (211)
...++ .++.+||+++.|++++++.|.+.
T Consensus 121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 55666 48999999999999999998764
No 351
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.72 E-value=2.2e-07 Score=75.29 Aligned_cols=141 Identities=15% Similarity=0.147 Sum_probs=85.6
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
...+.++-++|+||||+||||||+.|.............-..+ ...+....++|.++|. +... .......+|.
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT----vvsgK~RRiTflEcp~--Dl~~-miDvaKIaDL 136 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT----VVSGKTRRITFLECPS--DLHQ-MIDVAKIADL 136 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE----EeecceeEEEEEeChH--HHHH-HHhHHHhhhe
Confidence 4457789999999999999999999986644222222211111 2245677899999993 3333 2334567899
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCcccCHHHHHH-----HHHH-cCCeEEEeeccC
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVVSREEGIA-----LAKE-HGSLFLECSAKT 161 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v~~~~~~~-----~~~~-~~~~~~~~Sa~~ 161 (211)
+++++|.+=....+.+. ++.++..+ +.| ++-|+|..|+...........+. +-.- .|+.+|.+|...
T Consensus 137 VlLlIdgnfGfEMETmE--FLnil~~H----GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 137 VLLLIDGNFGFEMETME--FLNILISH----GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred eEEEeccccCceehHHH--HHHHHhhc----CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 99999987643333333 55555544 555 45688999985432111111111 1111 367888888765
Q ss_pred C
Q 028300 162 R 162 (211)
Q Consensus 162 ~ 162 (211)
+
T Consensus 211 n 211 (1077)
T COG5192 211 N 211 (1077)
T ss_pred c
Confidence 3
No 352
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.72 E-value=3.8e-08 Score=68.65 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=43.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (211)
....+|+++|.+|+|||||+|.+.+..........+++.....+.+. ..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec---CCEEEEECCC
Confidence 45688999999999999999999987654444555666655555543 3588999998
No 353
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.71 E-value=7.4e-08 Score=68.32 Aligned_cols=99 Identities=15% Similarity=0.080 Sum_probs=65.3
Q ss_pred CCChh-hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH
Q 028300 69 TAGQE-RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA 147 (211)
Q Consensus 69 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~ 147 (211)
.||+. +........+.++|++++|+|++++....+.. +... ..+.|.++|+||+|+.+...+ ....++.
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~--i~~~------~~~k~~ilVlNK~Dl~~~~~~--~~~~~~~ 71 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPL--LEKI------LGNKPRIIVLNKADLADPKKT--KKWLKYF 71 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChh--hHhH------hcCCCEEEEEehhhcCChHHH--HHHHHHH
Confidence 45643 23344567789999999999998764322111 2111 135789999999998543221 1122333
Q ss_pred HHcCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300 148 KEHGSLFLECSAKTRENVEQCFEQLALKIM 177 (211)
Q Consensus 148 ~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 177 (211)
...+..++.+|++++.|++++.+.+.+.+.
T Consensus 72 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 72 ESKGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred HhcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 334456899999999999999999888763
No 354
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=9.1e-09 Score=80.18 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=93.4
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhhCC--------C---------CCCCCccceeeEEEEEEECCEEEEEEEEeCC
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSS--------V---------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 70 (211)
+....+--+|+++.+-.+||||...+++.-. . -......|.+.++..+.++..+..+.++|||
T Consensus 31 ~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtp 110 (753)
T KOG0464|consen 31 NPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTP 110 (753)
T ss_pred CCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCC
Confidence 3444555689999999999999999886321 1 0111345788888889999999999999999
Q ss_pred ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
|+-+|+-....+++-.|+++.|||.+..-.-..+.. |++. ...++|....+||+|...
T Consensus 111 ghvdf~leverclrvldgavav~dasagve~qtltv-wrqa-----dk~~ip~~~finkmdk~~ 168 (753)
T KOG0464|consen 111 GHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTV-WRQA-----DKFKIPAHCFINKMDKLA 168 (753)
T ss_pred CcceEEEEHHHHHHHhcCeEEEEeccCCcccceeee-ehhc-----cccCCchhhhhhhhhhhh
Confidence 999999989999999999999999986433333333 6544 456899999999999754
No 355
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.5e-07 Score=71.60 Aligned_cols=141 Identities=20% Similarity=0.164 Sum_probs=95.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhh-------CC---CC-----CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFIS-------SS---VD-----DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR 76 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~-------~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (211)
...++|.-+|+..-|||||..++.. .+ ++ ......|.+.....+.++.....+-=.|+|||.+|-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 4568999999999999999887641 11 11 111234667777777776667777778999999997
Q ss_pred cchhhhccCCcEEEEEEECCCh---hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc---cCHHHHHHHHHHc
Q 028300 77 TLTSSYYRGAQGIILVYDVTRR---ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV---VSREEGIALAKEH 150 (211)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~---v~~~~~~~~~~~~ 150 (211)
........+.|+.|+|+.++|. ++-+.+. +.+.+ .-..+++.+||.|+.++.+ .-+-+++++...+
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTrEHlL--LArQV------GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~ 203 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTREHLL--LARQV------GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEF 203 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchHHHHH--HHHHc------CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHc
Confidence 7677778899999999999984 3333332 11111 1245788889999964322 2233456667776
Q ss_pred C-----CeEEEeecc
Q 028300 151 G-----SLFLECSAK 160 (211)
Q Consensus 151 ~-----~~~~~~Sa~ 160 (211)
+ .|++.-||+
T Consensus 204 gf~Gd~~PvI~GSAL 218 (449)
T KOG0460|consen 204 GFDGDNTPVIRGSAL 218 (449)
T ss_pred CCCCCCCCeeecchh
Confidence 5 467776664
No 356
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.69 E-value=1.2e-06 Score=70.94 Aligned_cols=139 Identities=19% Similarity=0.248 Sum_probs=86.8
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCC-----------------------------------------
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSP----------------------------------------- 44 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~----------------------------------------- 44 (211)
.....+.-.||+|+|+..+||||.+..+..... +....
T Consensus 301 sYnt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR 380 (980)
T KOG0447|consen 301 SYNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALR 380 (980)
T ss_pred cccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHH
Confidence 345677888999999999999999998863331 11000
Q ss_pred -----------ccceeeE--EEEEEECCEE-EEEEEEeCCCh-------------hhhccchhhhccCCcEEEEEEECCC
Q 028300 45 -----------TIGVDFK--IKLLTVAGKR-LKLTIWDTAGQ-------------ERFRTLTSSYYRGAQGIILVYDVTR 97 (211)
Q Consensus 45 -----------~~~~~~~--~~~~~~~~~~-~~~~l~D~~g~-------------~~~~~~~~~~~~~~d~~i~v~d~~~ 97 (211)
-.|.++. .+..+..+.+ ....++|+||. +....+..+++.+.+++|+|+--.+
T Consensus 381 ~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS 460 (980)
T KOG0447|consen 381 HEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS 460 (980)
T ss_pred HHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC
Confidence 0011111 1222222222 35778999992 2233456788999999999987554
Q ss_pred hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH
Q 028300 98 RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE 149 (211)
Q Consensus 98 ~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~ 149 (211)
.+.-.....-+.... .+.+...++|+||.|+.+..-.+...+++...-
T Consensus 461 VDAERSnVTDLVsq~----DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 461 VDAERSIVTDLVSQM----DPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred cchhhhhHHHHHHhc----CCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence 433222222122222 466889999999999988766777777766553
No 357
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.67 E-value=1.4e-07 Score=65.85 Aligned_cols=91 Identities=14% Similarity=0.001 Sum_probs=57.8
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300 81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK 160 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 160 (211)
..+..+|++++|+|+.++..-.+ .. +...+.. ...++|+++|+||+|+.+.... ......+...+....+.+||+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~-~~-i~~~l~~--~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC-KH-VEEYLKK--EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC-HH-HHHHHHh--ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence 34678999999999998632211 11 3333332 2346899999999999643321 111222222222335789999
Q ss_pred CCCcHHHHHHHHHHHH
Q 028300 161 TRENVEQCFEQLALKI 176 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~ 176 (211)
++.|++++++.+.+.+
T Consensus 79 ~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 79 NPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999987754
No 358
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.63 E-value=1.8e-07 Score=65.22 Aligned_cols=85 Identities=15% Similarity=0.046 Sum_probs=56.0
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 166 (211)
|++++|+|+.++.+.... +... ......++|+++|+||+|+.+...+. .....+.......++.+||+++.|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~---~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~~-~~~~~~~~~~~~~ii~vSa~~~~gi~ 74 (155)
T cd01849 1 DVILEVLDARDPLGTRSP---DIER--VLIKEKGKKLILVLNKADLVPKEVLR-KWLAYLRHSYPTIPFKISATNGQGIE 74 (155)
T ss_pred CEEEEEEeccCCccccCH---HHHH--HHHhcCCCCEEEEEechhcCCHHHHH-HHHHHHHhhCCceEEEEeccCCcChh
Confidence 789999999887654432 1211 11124578999999999985432211 11112222335568999999999999
Q ss_pred HHHHHHHHHHH
Q 028300 167 QCFEQLALKIM 177 (211)
Q Consensus 167 ~l~~~i~~~~~ 177 (211)
++++.+.+...
T Consensus 75 ~L~~~i~~~~~ 85 (155)
T cd01849 75 KKESAFTKQTN 85 (155)
T ss_pred hHHHHHHHHhH
Confidence 99999877643
No 359
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.63 E-value=1.9e-07 Score=71.28 Aligned_cols=101 Identities=18% Similarity=0.104 Sum_probs=67.8
Q ss_pred CCChhh-hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH
Q 028300 69 TAGQER-FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA 147 (211)
Q Consensus 69 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~ 147 (211)
.|||.. ........+..+|++++|+|+.++.+..+.. +...+ .+.|+++|+||+|+.+.... ....++.
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~--i~~~l------~~kp~IiVlNK~DL~~~~~~--~~~~~~~ 73 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPM--IDEIR------GNKPRLIVLNKADLADPAVT--KQWLKYF 73 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChh--HHHHH------CCCCEEEEEEccccCCHHHH--HHHHHHH
Confidence 567653 2334567789999999999998765433211 22222 26799999999998543211 2222233
Q ss_pred HHcCCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300 148 KEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 148 ~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
...+.+++.+|+.++.|++++.+.+.+.+.+.
T Consensus 74 ~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 74 EEKGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred HHcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 33566789999999999999999988876543
No 360
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.63 E-value=1.2e-06 Score=64.80 Aligned_cols=88 Identities=18% Similarity=0.106 Sum_probs=55.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC--CCCCCC----CccceeeEEEEEEECCEEEEEEEEeCCChhhhcc------ch
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS--SVDDLS----PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT------LT 79 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~ 79 (211)
..-.-|+|+|++++|||+|+|+|++. .|.... .|.|.......... +....+.++||+|...... ..
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhH
Confidence 45567999999999999999999998 663222 22332222211111 2356899999999543221 12
Q ss_pred hhhccC--CcEEEEEEECCChhh
Q 028300 80 SSYYRG--AQGIILVYDVTRRET 100 (211)
Q Consensus 80 ~~~~~~--~d~~i~v~d~~~~~s 100 (211)
...+.. +|++||..+......
T Consensus 84 ~~~l~~llss~~i~n~~~~~~~~ 106 (224)
T cd01851 84 LFALATLLSSVLIYNSWETILGD 106 (224)
T ss_pred HHHHHHHHhCEEEEeccCcccHH
Confidence 223333 789998888775443
No 361
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.61 E-value=5.3e-07 Score=69.76 Aligned_cols=168 Identities=14% Similarity=0.134 Sum_probs=92.5
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC-------------------C--------------------ccc
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-------------------P--------------------TIG 47 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~-------------------~--------------------~~~ 47 (211)
+....=.++||+++|...+|||||+..|..++.++.. . ..+
T Consensus 126 ~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg 205 (641)
T KOG0463|consen 126 PTEKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHG 205 (641)
T ss_pred CCCccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCC
Confidence 3344457899999999999999999877644321100 0 111
Q ss_pred eeeEEEEEEECCEEEEEEEEeCCChhhhccc--hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEE
Q 028300 48 VDFKIKLLTVAGKRLKLTIWDTAGQERFRTL--TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKML 125 (211)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~vi 125 (211)
-......+. ++....++|+|++|++.|-.. ..+.-.-.|...+.+-++.. +..+-.+.+. ......+|+++
T Consensus 206 ~~LdWvkIc-e~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-----IiGmTKEHLg-LALaL~VPVfv 278 (641)
T KOG0463|consen 206 HNLDWVKIC-EDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-----IIGMTKEHLG-LALALHVPVFV 278 (641)
T ss_pred Ccccceeec-cccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-----ceeccHHhhh-hhhhhcCcEEE
Confidence 122212211 223346899999999988532 22222335766776665542 1110111111 11245789999
Q ss_pred EeecCCCCCCcccCHH--HHHHHH--------------------------HHcCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300 126 VGNKVDRDSERVVSRE--EGIALA--------------------------KEHGSLFLECSAKTRENVEQCFEQLALKIM 177 (211)
Q Consensus 126 v~nK~Dl~~~~~v~~~--~~~~~~--------------------------~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 177 (211)
|+||+|..+.....+. ....+. .+.-+|+|.+|-.+|.++. ++...+..+-
T Consensus 279 VVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~-LLkmFLNlls 357 (641)
T KOG0463|consen 279 VVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLP-LLKMFLNLLS 357 (641)
T ss_pred EEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChH-HHHHHHhhcC
Confidence 9999998655432211 111111 1122468999999999986 4444455444
Q ss_pred hccch
Q 028300 178 EVPSL 182 (211)
Q Consensus 178 ~~~~~ 182 (211)
-++..
T Consensus 358 ~R~~~ 362 (641)
T KOG0463|consen 358 LRRQL 362 (641)
T ss_pred ccccc
Confidence 44443
No 362
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.61 E-value=9.7e-08 Score=72.62 Aligned_cols=88 Identities=23% Similarity=0.213 Sum_probs=56.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEE---------------CCEEEEEEEEeCCChh
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTV---------------AGKRLKLTIWDTAGQE 73 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~D~~g~~ 73 (211)
...+.++|+|+|.|++|||||+|.|..... ....|....+-..-.+.+ ...+..++++|++|.-
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 345788999999999999999999997765 222222221111111111 1135678999999832
Q ss_pred h-------hccchhhhccCCcEEEEEEECCC
Q 028300 74 R-------FRTLTSSYYRGAQGIILVYDVTR 97 (211)
Q Consensus 74 ~-------~~~~~~~~~~~~d~~i~v~d~~~ 97 (211)
. ..+....-++.+|+++.|+++.+
T Consensus 96 kGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 96 KGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 1 12223345678899999998664
No 363
>PRK14974 cell division protein FtsY; Provisional
Probab=98.60 E-value=1.1e-07 Score=74.02 Aligned_cols=93 Identities=17% Similarity=0.223 Sum_probs=55.2
Q ss_pred EEEEEEeCCChhhhcc-c---hhhh--ccCCcEEEEEEECCChhh-HHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 62 LKLTIWDTAGQERFRT-L---TSSY--YRGAQGIILVYDVTRRET-FTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~-~---~~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
..+.|+||+|...... + ...+ ..+.|..++|+|+...+. .+.+.. +...+ .+--+|+||.|...
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~-f~~~~--------~~~giIlTKlD~~~ 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQARE-FNEAV--------GIDGVILTKVDADA 293 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHH-HHhcC--------CCCEEEEeeecCCC
Confidence 4689999999543221 1 1111 235789999999876432 222222 22211 13478999999743
Q ss_pred CcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 135 ERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 135 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
.-- .+...+...+.|+..++ +|.+++++.
T Consensus 294 ~~G----~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 294 KGG----AALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred Ccc----HHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 321 23344555688888876 788888775
No 364
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.59 E-value=6.2e-08 Score=72.74 Aligned_cols=115 Identities=15% Similarity=0.109 Sum_probs=78.9
Q ss_pred EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCC----hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc
Q 028300 62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTR----RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV 137 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~ 137 (211)
..+.|.|+||++-.-........-.|+.++++..++ +++-+.+.. .++ ..-+.++|+-||+|+..+.+
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--vei------M~LkhiiilQNKiDli~e~~ 196 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEI------MKLKHIIILQNKIDLIKESQ 196 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHH------hhhceEEEEechhhhhhHHH
Confidence 467899999998765555555556799999888775 444444432 111 12345789999999965543
Q ss_pred c--CHHHHHHHHHH---cCCeEEEeeccCCCcHHHHHHHHHHHHHhccchhc
Q 028300 138 V--SREEGIALAKE---HGSLFLECSAKTRENVEQCFEQLALKIMEVPSLLE 184 (211)
Q Consensus 138 v--~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~~ 184 (211)
. ..+.+..|... .++|++++||....+++-+.+.|...+..-.+-+.
T Consensus 197 A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~ 248 (466)
T KOG0466|consen 197 ALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFT 248 (466)
T ss_pred HHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccC
Confidence 2 22334444442 46799999999999999999999988766555443
No 365
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1.6e-07 Score=78.14 Aligned_cols=115 Identities=26% Similarity=0.375 Sum_probs=85.3
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC---------------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChh
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV---------------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (211)
...+.--+|+++.+..-|||||+..|....- -+...+.|.+...-.+.....++.++++|+|||-
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 3455667899999999999999999874331 2223455667666666666678899999999999
Q ss_pred hhccchhhhccCCcEEEEEEECCCh---hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300 74 RFRTLTSSYYRGAQGIILVYDVTRR---ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132 (211)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl 132 (211)
+|.+......+-+|++++.+|+.+. ++..-+++.|. .+...++|+||+|.
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~---------~~~~~~lvinkidr 136 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI---------EGLKPILVINKIDR 136 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH---------ccCceEEEEehhhh
Confidence 9999888888899999999998763 33333333333 24445899999993
No 366
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.55 E-value=2.1e-07 Score=72.85 Aligned_cols=81 Identities=17% Similarity=0.088 Sum_probs=52.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-C--CCCCc-cceeeEEEEEEECC---------------EEEEEEEEeCCChhh-
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-D--DLSPT-IGVDFKIKLLTVAG---------------KRLKLTIWDTAGQER- 74 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~--~~~~~-~~~~~~~~~~~~~~---------------~~~~~~l~D~~g~~~- 74 (211)
.+++++|.|++|||||++.+.+... . .+..+ ...... .+...+ ....+.+.|+||.-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g--~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~g 80 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAG--VVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGG 80 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCcee--EEEechhHHHHHHHHhCCcCcCCceEEEEeccccccc
Confidence 7899999999999999999998765 2 22111 111111 112222 124678999999432
Q ss_pred ------hccchhhhccCCcEEEEEEECCC
Q 028300 75 ------FRTLTSSYYRGAQGIILVYDVTR 97 (211)
Q Consensus 75 ------~~~~~~~~~~~~d~~i~v~d~~~ 97 (211)
........++.+|++++|+++.+
T Consensus 81 As~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 81 ASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred hhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 22234456789999999999853
No 367
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.55 E-value=9.2e-07 Score=68.62 Aligned_cols=142 Identities=20% Similarity=0.274 Sum_probs=79.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCC-----------ccceeeEEEEEE-------------E
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-----------DDLSP-----------TIGVDFKIKLLT-------------V 57 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-----------~~~~~-----------~~~~~~~~~~~~-------------~ 57 (211)
..-.|+++|++|+||||++..|...-. +.+.. ..+..+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 456889999999999999998863211 00000 001111100000 0
Q ss_pred CCEEEEEEEEeCCChhhhcc--------chh---h-hccCCcEEEEEEECCChh-hHHHHHHHHHHHhhhhccCCCccEE
Q 028300 58 AGKRLKLTIWDTAGQERFRT--------LTS---S-YYRGAQGIILVYDVTRRE-TFTNLSDVWAKEVDLYSTNQDCVKM 124 (211)
Q Consensus 58 ~~~~~~~~l~D~~g~~~~~~--------~~~---~-~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~v 124 (211)
....+.+.++||||...... +.. . .-...+..++|+|++... .+..+.. +... -.+.-
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~-f~~~--------~~~~g 263 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA-FHEA--------VGLTG 263 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH-HHhh--------CCCCE
Confidence 11345789999999543211 111 1 123468899999998642 2333222 2111 13447
Q ss_pred EEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 125 LVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 125 iv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
+|+||.|....- -.+.......+.|+..++ +|.+++++-
T Consensus 264 iIlTKlD~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 264 IILTKLDGTAKG----GVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred EEEECCCCCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 999999954321 223445566688988887 777787764
No 368
>PRK12289 GTPase RsgA; Reviewed
Probab=98.54 E-value=1.5e-07 Score=73.90 Aligned_cols=58 Identities=26% Similarity=0.338 Sum_probs=40.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccc-------eeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIG-------VDFKIKLLTVAGKRLKLTIWDTAGQERFR 76 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (211)
.++|+|++|||||||||+|+...........+ ++.....+.+.... .|+||||...+.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccccc
Confidence 37999999999999999999765433333333 55555555554333 688999975433
No 369
>PRK12288 GTPase RsgA; Reviewed
Probab=98.53 E-value=1.7e-07 Score=73.47 Aligned_cols=57 Identities=23% Similarity=0.353 Sum_probs=38.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCCCCcc-------ceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300 17 ILLIGDSGVGKSSLLVSFISSSVDDLSPTI-------GVDFKIKLLTVAGKRLKLTIWDTAGQERFR 76 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (211)
++|+|.+|||||||||+|++.....+.... .++.....+.+.... .++||||..++.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 789999999999999999976542222211 244444445554332 489999976655
No 370
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.52 E-value=4.7e-07 Score=69.52 Aligned_cols=101 Identities=20% Similarity=0.139 Sum_probs=68.1
Q ss_pred CCChhhh-ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH
Q 028300 69 TAGQERF-RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA 147 (211)
Q Consensus 69 ~~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~ 147 (211)
.|||..- .......+..+|++++|+|+.++.+..+.. +...+ .+.|+++|+||+|+.+... ......+.
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~--l~~~~------~~kp~iiVlNK~DL~~~~~--~~~~~~~~ 76 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPM--IDKII------GNKPRLLILNKSDLADPEV--TKKWIEYF 76 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChh--HHHHh------CCCCEEEEEEchhcCCHHH--HHHHHHHH
Confidence 6776532 234567789999999999998765432211 22221 2689999999999854321 12223333
Q ss_pred HHcCCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300 148 KEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 148 ~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
...+.+++.+|+.++.|++++.+.+.+.+.+.
T Consensus 77 ~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 77 EEQGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred HHcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 44467889999999999999999888776543
No 371
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3e-06 Score=70.07 Aligned_cols=144 Identities=17% Similarity=0.246 Sum_probs=83.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CC-CCCc-------------------cc-----------------------
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DD-LSPT-------------------IG----------------------- 47 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~-~~~~-------------------~~----------------------- 47 (211)
+..-||+|.|..++||||++|+++.... +. ..++ .+
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4567999999999999999999985443 11 1110 00
Q ss_pred eeeEEEEEEECCE-----EEEEEEEeCCChh---hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCC
Q 028300 48 VDFKIKLLTVAGK-----RLKLTIWDTAGQE---RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQ 119 (211)
Q Consensus 48 ~~~~~~~~~~~~~-----~~~~~l~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 119 (211)
.......+.++.. .-.+.++|.||.+ +..+-...+...+|++|+|..+.+-....+.. ++.... ..
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~--Ff~~vs----~~ 260 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ--FFHKVS----EE 260 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH--HHHHhh----cc
Confidence 0000111111111 1157788999943 34444566778899999999998864433333 333222 23
Q ss_pred CccEEEEeecCCCCCCcccCHHHHHHHHHHcCC--------eEEEeeccC
Q 028300 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEHGS--------LFLECSAKT 161 (211)
Q Consensus 120 ~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~--------~~~~~Sa~~ 161 (211)
+.-++|+-||.|....++...++++...+++.. .+|.+|++.
T Consensus 261 KpniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 261 KPNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred CCcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 666788888989865544344444333333321 378888543
No 372
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.48 E-value=9.5e-07 Score=67.14 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=55.4
Q ss_pred EEEEEEEeCCChhhhccchh-------hh-----ccCCcEEEEEEECCChh-hHHHHHHHHHHHhhhhccCCCccEEEEe
Q 028300 61 RLKLTIWDTAGQERFRTLTS-------SY-----YRGAQGIILVYDVTRRE-TFTNLSDVWAKEVDLYSTNQDCVKMLVG 127 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~-------~~-----~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~viv~ 127 (211)
++.+.++||||....+.... .. -..+|..++|+|++... .+..+.. +.+.+ .+.-+|+
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~-f~~~~--------~~~g~Il 224 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKV-FNEAV--------GLTGIIL 224 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHH-HHhhC--------CCCEEEE
Confidence 46789999999653322111 11 12479999999998532 2322222 22111 2458999
Q ss_pred ecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 128 NKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 128 nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
||.|..... -.+.......+.|+..++ +|.+++++-
T Consensus 225 TKlDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 225 TKLDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred EccCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 999974332 223444556688887777 677777653
No 373
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.48 E-value=5.9e-07 Score=61.61 Aligned_cols=78 Identities=18% Similarity=0.122 Sum_probs=51.7
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec
Q 028300 80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA 159 (211)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 159 (211)
...+..+|++++|+|+.++.+..+. . +...+... ..++|+++|+||+|+.++.. ......+....+..++.+||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~-~-l~~~l~~~--~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPP-D-LERYVKEV--DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCH-H-HHHHHHhc--cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence 4457889999999999887653321 1 22333222 24789999999999854332 22334455566678999999
Q ss_pred cCCC
Q 028300 160 KTRE 163 (211)
Q Consensus 160 ~~~~ 163 (211)
.++.
T Consensus 80 ~~~~ 83 (141)
T cd01857 80 LKEN 83 (141)
T ss_pred cCCC
Confidence 8764
No 374
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.45 E-value=1.3e-06 Score=64.42 Aligned_cols=122 Identities=14% Similarity=0.113 Sum_probs=76.0
Q ss_pred ECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChh----------hHHHHHHHHHHHhhhhccCCCccEEEE
Q 028300 57 VAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE----------TFTNLSDVWAKEVDLYSTNQDCVKMLV 126 (211)
Q Consensus 57 ~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~~~~p~viv 126 (211)
+.-..+.++.+|.+|+.+.+.-|..++...-++|+|+..++-+ .+.+....+...-... -...+.+++.
T Consensus 197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNR-wL~tisvIlF 275 (379)
T KOG0099|consen 197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNR-WLRTISVILF 275 (379)
T ss_pred EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhh-HHhhhheeEE
Confidence 3345567999999999999999999999999999999987521 1222222111111111 1235788999
Q ss_pred eecCCCCCCc------------------------------ccCHHHHHHHHHH--------c-----CCeEEEeeccCCC
Q 028300 127 GNKVDRDSER------------------------------VVSREEGIALAKE--------H-----GSLFLECSAKTRE 163 (211)
Q Consensus 127 ~nK~Dl~~~~------------------------------~v~~~~~~~~~~~--------~-----~~~~~~~Sa~~~~ 163 (211)
+||.|+..++ ......++.+.+. . -+-+..+-|.+.+
T Consensus 276 LNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTe 355 (379)
T KOG0099|consen 276 LNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTE 355 (379)
T ss_pred ecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechH
Confidence 9999973221 0001111111111 1 1224667788899
Q ss_pred cHHHHHHHHHHHHHhc
Q 028300 164 NVEQCFEQLALKIMEV 179 (211)
Q Consensus 164 gv~~l~~~i~~~~~~~ 179 (211)
+|.++|+.....+...
T Consensus 356 nIrrVFnDcrdiIqr~ 371 (379)
T KOG0099|consen 356 NIRRVFNDCRDIIQRM 371 (379)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999887776654
No 375
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.45 E-value=2.2e-06 Score=63.17 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=63.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh-------ccchhhhccCC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF-------RTLTSSYYRGA 86 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~ 86 (211)
..++.++|-|.+||||++..+.+.. .+...-.+++...+...+....-++++.|+||.-+- ........+.+
T Consensus 59 ~a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 59 DARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred ceeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 3489999999999999999998654 333444445555444444445667899999994321 22345567888
Q ss_pred cEEEEEEECCChhhHHHH
Q 028300 87 QGIILVYDVTRRETFTNL 104 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~ 104 (211)
..+++|.|+-.|-+...+
T Consensus 138 nli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred cEEEEEeeccCcccHHHH
Confidence 999999998887655444
No 376
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.44 E-value=3.9e-07 Score=72.92 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=51.4
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (211)
..+...+.|+++|-|||||||+||.|.+.+...+..|+|-+.+..++.+.. .+.|.|+||.
T Consensus 309 ~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGL 369 (562)
T KOG1424|consen 309 ERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGL 369 (562)
T ss_pred cCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCc
Confidence 334447999999999999999999999999988889999888877776643 5788999993
No 377
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.44 E-value=4.4e-07 Score=68.00 Aligned_cols=57 Identities=30% Similarity=0.374 Sum_probs=38.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCC-------ccceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSP-------TIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR 76 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (211)
.++++|.+|+|||||+|+|.+........ ...++.....+.+.+ ..++||||...+.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~----~~liDtPG~~~~~ 185 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG----GLIADTPGFNEFG 185 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC----cEEEeCCCccccC
Confidence 68999999999999999999765322111 112455545555532 2689999976543
No 378
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.41 E-value=3.2e-05 Score=53.16 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=76.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh------------------
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE------------------ 73 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~------------------ 73 (211)
....||++.|+|||||||++.++...--.......| +....+.-.+...-|.+.|+...+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG--f~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG--FITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee--EEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 456899999999999999999887432111111111 222233334455566666665211
Q ss_pred ----hhc----cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHH
Q 028300 74 ----RFR----TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIA 145 (211)
Q Consensus 74 ----~~~----~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~ 145 (211)
.+. ......+..+|++ ++|=-.+- +.....+...+... ...+.|++.++.+.+-.+ ..+
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpM--Elks~~f~~~ve~v-l~~~kpliatlHrrsr~P--------~v~ 147 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVI--IIDEIGPM--ELKSKKFREAVEEV-LKSGKPLIATLHRRSRHP--------LVQ 147 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEE--EEecccch--hhccHHHHHHHHHH-hcCCCcEEEEEecccCCh--------HHH
Confidence 001 1122233445654 44533332 22212244444433 345778777777665311 112
Q ss_pred HHHHcCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300 146 LAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 146 ~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
..+..+-.|+. .+..+-+.+++.|+..+..
T Consensus 148 ~ik~~~~v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 148 RIKKLGGVYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred HhhhcCCEEEE---EccchhhHHHHHHHHHhcc
Confidence 23333433433 5666666888888876654
No 379
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.40 E-value=4.1e-07 Score=63.11 Aligned_cols=59 Identities=29% Similarity=0.379 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCC---CC----CccceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDD---LS----PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR 76 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (211)
-.++++|++|||||||+|.|....... .. .-..++.....+.++.. ..++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCccc
Confidence 368999999999999999999774311 11 11224444445555443 3678999976654
No 380
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.38 E-value=9.2e-07 Score=70.01 Aligned_cols=56 Identities=23% Similarity=0.377 Sum_probs=42.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCCccceeeEEEEEEECCEEEEEEEEeCCChh
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-----DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (211)
.+++++|.+|||||||+|+|++... ......++++.....+.+.. .+.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence 4899999999999999999997542 24556677777766666532 25799999954
No 381
>PRK13796 GTPase YqeH; Provisional
Probab=98.38 E-value=6.4e-07 Score=70.99 Aligned_cols=56 Identities=21% Similarity=0.268 Sum_probs=42.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCCccceeeEEEEEEECCEEEEEEEEeCCChh
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-----DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (211)
.++.++|.+|||||||||+|..... ....+.+|++.....+.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 4799999999999999999986432 224566788887777766443 3789999953
No 382
>PRK01889 GTPase RsgA; Reviewed
Probab=98.38 E-value=2.1e-06 Score=67.78 Aligned_cols=85 Identities=15% Similarity=0.100 Sum_probs=55.8
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300 82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT 161 (211)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 161 (211)
.+.++|.+++|+++..+-....+.. ++.... ..+++.+||+||+|+.+...........+ ..+.+++.+|+++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr-~L~~a~----~~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~ 181 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIER-YLALAW----ESGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALD 181 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHH-HHHHHH----HcCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCC
Confidence 4688999999999974333222222 444333 34778899999999965311011111111 3467899999999
Q ss_pred CCcHHHHHHHHH
Q 028300 162 RENVEQCFEQLA 173 (211)
Q Consensus 162 ~~gv~~l~~~i~ 173 (211)
+.|++++..++.
T Consensus 182 g~gl~~L~~~L~ 193 (356)
T PRK01889 182 GEGLDVLAAWLS 193 (356)
T ss_pred CccHHHHHHHhh
Confidence 999999887764
No 383
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.36 E-value=2.7e-06 Score=59.46 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028300 17 ILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~ 37 (211)
+++.|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999998865
No 384
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.35 E-value=9e-07 Score=64.12 Aligned_cols=124 Identities=15% Similarity=0.209 Sum_probs=78.5
Q ss_pred EEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHhhhhccCCCccEE
Q 028300 55 LTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTR----------RETFTNLSDVWAKEVDLYSTNQDCVKM 124 (211)
Q Consensus 55 ~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~v 124 (211)
+.++...+.+.+.|.+|+...+.-|.+++.+.-.+++++.+++ .+..++....+...+ .+.=-.+.+++
T Consensus 192 ypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi-~yPWF~nssVI 270 (359)
T KOG0085|consen 192 YPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTII-TYPWFQNSSVI 270 (359)
T ss_pred cCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHh-ccccccCCceE
Confidence 3445556778899999998888889999999888887777654 223444444233322 22223578999
Q ss_pred EEeecCCCCCCcc----------------cCHHHHHHHHHH----cC-----CeE-EEeeccCCCcHHHHHHHHHHHHHh
Q 028300 125 LVGNKVDRDSERV----------------VSREEGIALAKE----HG-----SLF-LECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 125 iv~nK~Dl~~~~~----------------v~~~~~~~~~~~----~~-----~~~-~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
+.+||.|+.+++. -+...++.|..+ .+ +.| ..+-|.+..++.-+|..+...++.
T Consensus 271 lFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq 350 (359)
T KOG0085|consen 271 LFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 350 (359)
T ss_pred EEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence 9999999855421 112223333322 11 122 446677788999999888777665
Q ss_pred c
Q 028300 179 V 179 (211)
Q Consensus 179 ~ 179 (211)
.
T Consensus 351 ~ 351 (359)
T KOG0085|consen 351 L 351 (359)
T ss_pred h
Confidence 4
No 385
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.35 E-value=8.1e-06 Score=73.82 Aligned_cols=114 Identities=16% Similarity=0.118 Sum_probs=64.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCCC-----Cc--cceeeEEEEEEECCEEEEEEEEeCCChh--------hhccchhh
Q 028300 17 ILLIGDSGVGKSSLLVSFISSSVDDLS-----PT--IGVDFKIKLLTVAGKRLKLTIWDTAGQE--------RFRTLTSS 81 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~ 81 (211)
.+|+|++|+||||++.+- +..++... .+ .+.+.. ....+.+ .-.++|++|.. .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 579999999999999987 34442211 11 111221 1222322 34588999921 11223444
Q ss_pred hc---------cCCcEEEEEEECCChh-----hHHHHHHHHHHHhhhhc--cCCCccEEEEeecCCCCCC
Q 028300 82 YY---------RGAQGIILVYDVTRRE-----TFTNLSDVWAKEVDLYS--TNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 82 ~~---------~~~d~~i~v~d~~~~~-----s~~~~~~~~~~~~~~~~--~~~~~p~viv~nK~Dl~~~ 135 (211)
++ +..+++|+++|+.+.- ........++..+.+.. .....|+.+++||+|+...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 33 3469999999977532 11111111333333221 2468999999999998643
No 386
>PRK13796 GTPase YqeH; Provisional
Probab=98.30 E-value=5.7e-06 Score=65.65 Aligned_cols=94 Identities=20% Similarity=0.232 Sum_probs=60.5
Q ss_pred hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHH----HHHHH
Q 028300 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEG----IALAK 148 (211)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~----~~~~~ 148 (211)
++|.......-...+.+++|+|+.+... . |...+..+ ..+.|+++|+||+|+.+. ....+.. ..++.
T Consensus 57 ~~~~~~l~~i~~~~~lIv~VVD~~D~~~-----s-~~~~L~~~--~~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k 127 (365)
T PRK13796 57 DDFLKLLNGIGDSDALVVNVVDIFDFNG-----S-WIPGLHRF--VGNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAK 127 (365)
T ss_pred HHHHHHHHhhcccCcEEEEEEECccCCC-----c-hhHHHHHH--hCCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHH
Confidence 3454444443333348999999987431 1 33444333 236799999999999643 2222232 23344
Q ss_pred HcCC---eEEEeeccCCCcHHHHHHHHHHH
Q 028300 149 EHGS---LFLECSAKTRENVEQCFEQLALK 175 (211)
Q Consensus 149 ~~~~---~~~~~Sa~~~~gv~~l~~~i~~~ 175 (211)
..++ .++.+||+++.|++++++.|.+.
T Consensus 128 ~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 128 ELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred hcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 5565 58999999999999999998764
No 387
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=6.4e-07 Score=69.71 Aligned_cols=159 Identities=18% Similarity=0.139 Sum_probs=98.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC------------------------CC------CCCccceeeEEEEEEECCE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV------------------------DD------LSPTIGVDFKIKLLTVAGK 60 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~------------------------~~------~~~~~~~~~~~~~~~~~~~ 60 (211)
-...++++|+|...+||||+-.++....- .. .....|.+...-...++..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 35678999999999999999877651110 00 0112233333344455556
Q ss_pred EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChh---hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc-
Q 028300 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE---TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER- 136 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~- 136 (211)
...+++.|.||+..|-........++|.-++|+++.-.+ .|+.--+ -+..........-...++++||+|-+...
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQ-TREha~Lakt~gv~~lVv~vNKMddPtvnW 234 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQ-TREHAMLAKTAGVKHLIVLINKMDDPTVNW 234 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccc-hhHHHHHHHhhccceEEEEEEeccCCccCc
Confidence 678899999999998877777788999999999985432 1222111 11222222234456789999999964221
Q ss_pred -ccC----HHHHHHHHHHcC------CeEEEeeccCCCcHHHHHH
Q 028300 137 -VVS----REEGIALAKEHG------SLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 137 -~v~----~~~~~~~~~~~~------~~~~~~Sa~~~~gv~~l~~ 170 (211)
.-. .+....+.+..+ ..|+++|..+|.++++...
T Consensus 235 s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 235 SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 111 122233344333 3599999999999987654
No 388
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=1.3e-06 Score=71.26 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=85.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-----CC------------CCCccceeeEEEEEEECCEEEEEEEEeCCChhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-----DD------------LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-----~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (211)
.+--+|.+.-+-.+||||+-++++.-.- .. .....|.+.++......+.++.+.++|||||-+
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 4555788999999999999998863221 00 112335556655555666788999999999999
Q ss_pred hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc
Q 028300 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER 136 (211)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~ 136 (211)
|.-.....++-.|+.++|++....-.-... ..|+++- ..++|.+..+||+|.....
T Consensus 117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~-----ry~vP~i~FiNKmDRmGa~ 172 (721)
T KOG0465|consen 117 FTFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQMK-----RYNVPRICFINKMDRMGAS 172 (721)
T ss_pred EEEEehhhhhhccCeEEEEEcccceehhhH-HHHHHHH-----hcCCCeEEEEehhhhcCCC
Confidence 988788888999999999997763222222 2266553 3489999999999976554
No 389
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.26 E-value=1.4e-05 Score=64.16 Aligned_cols=113 Identities=16% Similarity=0.169 Sum_probs=61.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhh------CCC-----CCCCC-----------ccceeeEEEEEEEC------------
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFIS------SSV-----DDLSP-----------TIGVDFKIKLLTVA------------ 58 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~------~~~-----~~~~~-----------~~~~~~~~~~~~~~------------ 58 (211)
.+-.|+++|++||||||++..|.. ... +.+.+ ..+..+.......+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 456899999999999999998862 111 11110 01111111000000
Q ss_pred -CEEEEEEEEeCCChhhhccch----hh--hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCC
Q 028300 59 -GKRLKLTIWDTAGQERFRTLT----SS--YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131 (211)
Q Consensus 59 -~~~~~~~l~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~D 131 (211)
...+.+.|+||+|....+... .. ...++|-+++|+|+...+.-.+....+.. .-.+.-+|+||.|
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~--------~~~~~g~IlTKlD 250 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKD--------SVDVGSVIITKLD 250 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHh--------ccCCcEEEEECcc
Confidence 024678999999954332111 11 12356889999998754322222111211 1235688999999
Q ss_pred CC
Q 028300 132 RD 133 (211)
Q Consensus 132 l~ 133 (211)
..
T Consensus 251 ~~ 252 (429)
T TIGR01425 251 GH 252 (429)
T ss_pred CC
Confidence 74
No 390
>PRK00098 GTPase RsgA; Reviewed
Probab=98.24 E-value=2.6e-06 Score=65.79 Aligned_cols=57 Identities=28% Similarity=0.354 Sum_probs=37.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCcc-------ceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTI-------GVDFKIKLLTVAGKRLKLTIWDTAGQERF 75 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (211)
.++++|++|+|||||+|.|.+.......... .++.....+.+... ..++|+||...+
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~ 229 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSF 229 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCcc
Confidence 6899999999999999999876542222211 13333344444332 367899997543
No 391
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.24 E-value=2.5e-06 Score=65.53 Aligned_cols=59 Identities=25% Similarity=0.323 Sum_probs=38.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCC-------CccceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLS-------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR 76 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (211)
-.++++|++|+|||||+|.|.+....... ....++.....+.+... ..++|+||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 47899999999999999999976542111 11124444444444322 2589999986543
No 392
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.23 E-value=1.1e-05 Score=61.16 Aligned_cols=95 Identities=22% Similarity=0.153 Sum_probs=67.9
Q ss_pred ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEE
Q 028300 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFL 155 (211)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 155 (211)
..+.+.-+.+.|-.++|+++.+|+--....+.++-.. ...++.-+|++||+|+.+......++.......++.+++
T Consensus 70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~ 145 (301)
T COG1162 70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVL 145 (301)
T ss_pred CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHH----HHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEE
Confidence 3445556667888999999988865444444243333 345787789999999976655443455666777899999
Q ss_pred EeeccCCCcHHHHHHHHHH
Q 028300 156 ECSAKTRENVEQCFEQLAL 174 (211)
Q Consensus 156 ~~Sa~~~~gv~~l~~~i~~ 174 (211)
.+|++++.+++++.+.+..
T Consensus 146 ~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 146 FVSAKNGDGLEELAELLAG 164 (301)
T ss_pred EecCcCcccHHHHHHHhcC
Confidence 9999999999887766543
No 393
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.22 E-value=1.6e-06 Score=67.46 Aligned_cols=60 Identities=23% Similarity=0.372 Sum_probs=51.5
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG 71 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (211)
..-...++++|+|-|++||||+||+|..........++|.+.....+.++. .+.|.|.||
T Consensus 247 ~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 247 GELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred cccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccC---CceeccCCc
Confidence 445789999999999999999999999998888888899888776666543 688899999
No 394
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.18 E-value=2.4e-06 Score=64.74 Aligned_cols=58 Identities=28% Similarity=0.430 Sum_probs=39.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC---CCCC----CccceeeEEEEEEECCEEEEEEEEeCCChhhhc
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV---DDLS----PTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR 76 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~ 76 (211)
..+++|++|+|||||+|+|..... .+.. .-..++.....+.+.+.+ .++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 568999999999999999986432 1111 222356666666665444 467999976655
No 395
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.18 E-value=1.4e-05 Score=56.79 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=44.0
Q ss_pred EEEEEEEeCCChhhhcc----chhhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 61 RLKLTIWDTAGQERFRT----LTSSYY--RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
...+.++|++|...... ....+. ...|.+++|++....... .. +...+... .+ ..-+|.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~-~~~~~~~~---~~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VN-QAKAFNEA---LG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HH-HHHHHHhh---CC-CCEEEEECCcCCC
Confidence 34578899999642211 111111 348999999998754322 22 22222111 12 3577889999743
Q ss_pred CcccCHHHHHHHHHHcCCeEE
Q 028300 135 ERVVSREEGIALAKEHGSLFL 155 (211)
Q Consensus 135 ~~~v~~~~~~~~~~~~~~~~~ 155 (211)
.. ......+...++|+.
T Consensus 154 ~~----g~~~~~~~~~~~p~~ 170 (173)
T cd03115 154 RG----GAALSIRAVTGKPIK 170 (173)
T ss_pred Cc----chhhhhHHHHCcCeE
Confidence 22 122334555566653
No 396
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=1.9e-05 Score=62.36 Aligned_cols=143 Identities=14% Similarity=0.103 Sum_probs=71.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-C-CCCC-------c---------------cceeeEEEEEE-------ECCE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-D-DLSP-------T---------------IGVDFKIKLLT-------VAGK 60 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~-~~~~-------~---------------~~~~~~~~~~~-------~~~~ 60 (211)
...-.++++|++|+||||++..|..... . .... + .+.......-. ....
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~ 214 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR 214 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc
Confidence 3345788999999999999999875321 0 0000 0 01111100000 0012
Q ss_pred EEEEEEEeCCChhhhccch----hh--hccCCcEEEEEEECCC-hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 61 RLKLTIWDTAGQERFRTLT----SS--YYRGAQGIILVYDVTR-RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
+..+.++||+|....+... .. ......-.++|++++. .+.+.++...|......-......+--+|+||.|..
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 4578899999955332221 11 1123345688999876 334444433232221100000011346888999964
Q ss_pred CCcccCHHHHHHHHHHcCCeEEEee
Q 028300 134 SERVVSREEGIALAKEHGSLFLECS 158 (211)
Q Consensus 134 ~~~~v~~~~~~~~~~~~~~~~~~~S 158 (211)
.. .-.+.......+.|+..++
T Consensus 295 ~~----~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 295 SN----LGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred CC----ccHHHHHHHHHCcCeEEEe
Confidence 32 2234455556666655554
No 397
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.11 E-value=1.7e-05 Score=54.73 Aligned_cols=58 Identities=16% Similarity=0.188 Sum_probs=35.9
Q ss_pred EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCC
Q 028300 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~D 131 (211)
.+.+.|+|++|.... ...++..+|-++++...+--+.+.-... .++ ...-++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~---~~~-------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA---GIM-------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh---hHh-------hhcCEEEEeCCC
Confidence 457889999885422 2347888999999988874333222221 111 122378899987
No 398
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.08 E-value=2.2e-06 Score=62.02 Aligned_cols=85 Identities=18% Similarity=0.167 Sum_probs=47.1
Q ss_pred EEEEEEeCCChhhhccc----hhhh--ccCCcEEEEEEECCChhh-HHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 62 LKLTIWDTAGQERFRTL----TSSY--YRGAQGIILVYDVTRRET-FTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~~----~~~~--~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
..+.|+||+|....... ...+ ....+-+++|++++.... +..+.. +...+ + +--+|+||.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~-~~~~~-------~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALA-FYEAF-------G-IDGLILTKLDETA 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHH-HHHHS-------S-TCEEEEESTTSSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHH-Hhhcc-------c-CceEEEEeecCCC
Confidence 46899999995433211 1111 125788999999887543 333322 22221 1 2357799999633
Q ss_pred CcccCHHHHHHHHHHcCCeEEEeec
Q 028300 135 ERVVSREEGIALAKEHGSLFLECSA 159 (211)
Q Consensus 135 ~~~v~~~~~~~~~~~~~~~~~~~Sa 159 (211)
. .-.........+.|+-.++.
T Consensus 155 ~----~G~~l~~~~~~~~Pi~~it~ 175 (196)
T PF00448_consen 155 R----LGALLSLAYESGLPISYITT 175 (196)
T ss_dssp T----THHHHHHHHHHTSEEEEEES
T ss_pred C----cccceeHHHHhCCCeEEEEC
Confidence 2 23345566677888666543
No 399
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.03 E-value=0.00022 Score=50.87 Aligned_cols=86 Identities=23% Similarity=0.168 Sum_probs=57.4
Q ss_pred EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC
Q 028300 60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS 139 (211)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~ 139 (211)
..+.+.++|+|+.... .....+..+|.+++++..+.. ++..+.. +...+... +.|+.+|+||.|.... .
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~-~~~~l~~~----~~~~~vV~N~~~~~~~---~ 159 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLER-AVELVRHF----GIPVGVVINKYDLNDE---I 159 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHH-HHHHHHHc----CCCEEEEEeCCCCCcc---h
Confidence 4568899999975422 234566889999999998844 5555555 44444432 5678999999996432 2
Q ss_pred HHHHHHHHHHcCCeEEE
Q 028300 140 REEGIALAKEHGSLFLE 156 (211)
Q Consensus 140 ~~~~~~~~~~~~~~~~~ 156 (211)
..+..++....+++++.
T Consensus 160 ~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 160 AEEIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHHHcCCCeEE
Confidence 34556667777777643
No 400
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.03 E-value=1.1e-05 Score=65.15 Aligned_cols=135 Identities=21% Similarity=0.207 Sum_probs=69.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCC----C-------CCCCCc-----------cceeeEEEEEEE-----------C
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSS----V-------DDLSPT-----------IGVDFKIKLLTV-----------A 58 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~----~-------~~~~~~-----------~~~~~~~~~~~~-----------~ 58 (211)
..+..|+++|++|+||||++..|...- . +.+.+. .+..+....... .
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 356789999999999999998875211 0 111110 011111000000 0
Q ss_pred CEEEEEEEEeCCChhhhccc----h--hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300 59 GKRLKLTIWDTAGQERFRTL----T--SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132 (211)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~----~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl 132 (211)
.....+.++||+|....... . ...+..+|.+++|+|++... +... ....+. .. -...-+|+||.|.
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~-~a~~F~---~~-l~i~gvIlTKlD~ 244 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKN-QAKAFH---EA-VGIGGIIITKLDG 244 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHH-HHHHHH---hc-CCCCEEEEecccC
Confidence 01237899999995443211 1 11234678999999987643 2211 111111 11 1134678899996
Q ss_pred CCCcccCHHHHHHHHHHcCCeEEEee
Q 028300 133 DSERVVSREEGIALAKEHGSLFLECS 158 (211)
Q Consensus 133 ~~~~~v~~~~~~~~~~~~~~~~~~~S 158 (211)
...- -.+.......+.|+..++
T Consensus 245 ~a~~----G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 245 TAKG----GGALSAVAETGAPIKFIG 266 (437)
T ss_pred CCcc----cHHHHHHHHHCcCEEEEe
Confidence 3221 223444555666755543
No 401
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.02 E-value=4.7e-05 Score=56.86 Aligned_cols=119 Identities=25% Similarity=0.331 Sum_probs=72.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcc---ceeeEEEEEEE--CCEEEEEEEEeCCChh-------hhcc
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTI---GVDFKIKLLTV--AGKRLKLTIWDTAGQE-------RFRT 77 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~l~D~~g~~-------~~~~ 77 (211)
...-.++|.-+|..|.|||||+..|++..|.....+. +......++.+ .+-..++++.||.|.- .|..
T Consensus 38 ~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~ 117 (406)
T KOG3859|consen 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKP 117 (406)
T ss_pred hcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccch
Confidence 3456789999999999999999999999984433322 22233223322 4556789999999821 1111
Q ss_pred -----------chh-----------hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 78 -----------LTS-----------SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 78 -----------~~~-----------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
... .--...++.+|.+..+.- ++..+....+..+. .++-++-|+.|+|-..
T Consensus 118 iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvtmk~Ld-----skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 118 IVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVTMKKLD-----SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHHHHHHh-----hhhhhHHHHHHhhhhh
Confidence 111 111355788888887753 55555544444443 3444555666888543
No 402
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00022 Score=52.62 Aligned_cols=162 Identities=25% Similarity=0.328 Sum_probs=94.8
Q ss_pred eEEEEEcCCCC--cHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCE--EEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 15 FKILLIGDSGV--GKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGK--RLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 15 ~~I~v~G~~~~--GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
..++|+|-+|+ ||.+|+.+|...+|. .......+.++.- ++++. .-.+.+.=.+-.+++...........-++
T Consensus 5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgw--tid~kyysadi~lcishicde~~lpn~~~a~pl~a~ 82 (418)
T KOG4273|consen 5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGW--TIDNKYYSADINLCISHICDEKFLPNAEIAEPLQAF 82 (418)
T ss_pred ceEEEecccccccchHHHHHHhcchhheeeccccCceeeece--EecceeeecceeEEeecccchhccCCcccccceeeE
Confidence 45789999998 999999999988883 3333333333322 22221 11122211111122221122223345789
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------------c---------------
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------------R--------------- 136 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------------~--------------- 136 (211)
+.|||++....+..+.. |.+...... .. -.+-++||.|..+. +
T Consensus 83 vmvfdlse~s~l~alqd-wl~htdins--fd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisete 158 (418)
T KOG4273|consen 83 VMVFDLSEKSGLDALQD-WLPHTDINS--FD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETE 158 (418)
T ss_pred EEEEeccchhhhHHHHh-hcccccccc--ch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccc
Confidence 99999999988888888 887654331 11 23556788885221 0
Q ss_pred --------c---cCHHHHHHHHHHcCCeEEEeeccC------------CCcHHHHHHHHHHHHHhccch
Q 028300 137 --------V---VSREEGIALAKEHGSLFLECSAKT------------RENVEQCFEQLALKIMEVPSL 182 (211)
Q Consensus 137 --------~---v~~~~~~~~~~~~~~~~~~~Sa~~------------~~gv~~l~~~i~~~~~~~~~~ 182 (211)
. .......+++.++++.+++.++.+ ..|++.+|..+...+....-.
T Consensus 159 gssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwpgmil 227 (418)
T KOG4273|consen 159 GSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWPGMIL 227 (418)
T ss_pred cccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCcccee
Confidence 0 111223455667788899988744 258999999888776655433
No 403
>PRK10867 signal recognition particle protein; Provisional
Probab=97.99 E-value=2.3e-05 Score=63.23 Aligned_cols=86 Identities=16% Similarity=0.215 Sum_probs=45.7
Q ss_pred EEEEEEEeCCChhhhcc-ch---hh--hccCCcEEEEEEECCChhhH-HHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 61 RLKLTIWDTAGQERFRT-LT---SS--YYRGAQGIILVYDVTRRETF-TNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~-~~---~~--~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
.+.+.|+||+|....+. +. .. ..-..+.+++|+|+...+.. +.+.. +...+ + ..-+|+||.|..
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~-F~~~~-------~-i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKA-FNEAL-------G-LTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHH-HHhhC-------C-CCEEEEeCccCc
Confidence 35689999999532211 11 11 11256788999998754322 22222 22111 1 236778999963
Q ss_pred CCcccCHHHHHHHHHHcCCeEEEeec
Q 028300 134 SERVVSREEGIALAKEHGSLFLECSA 159 (211)
Q Consensus 134 ~~~~v~~~~~~~~~~~~~~~~~~~Sa 159 (211)
... -.+.......+.|+..+..
T Consensus 254 ~rg----G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 254 ARG----GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ccc----cHHHHHHHHHCcCEEEEeC
Confidence 322 1245555666777655543
No 404
>PRK13695 putative NTPase; Provisional
Probab=97.98 E-value=0.00041 Score=49.25 Aligned_cols=82 Identities=12% Similarity=0.044 Sum_probs=43.2
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300 81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK 160 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 160 (211)
..+..+++ +++|=-.+ .+.....+...+.... ..+.|++++.+|.... .....+..-.+..++++
T Consensus 92 ~~l~~~~~--lllDE~~~--~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~-------~~~~~i~~~~~~~i~~~--- 156 (174)
T PRK13695 92 RALEEADV--IIIDEIGK--MELKSPKFVKAVEEVL-DSEKPVIATLHRRSVH-------PFVQEIKSRPGGRVYEL--- 156 (174)
T ss_pred hccCCCCE--EEEECCCc--chhhhHHHHHHHHHHH-hCCCeEEEEECchhhH-------HHHHHHhccCCcEEEEE---
Confidence 34456666 67783111 1111121344444332 4578999999985421 11122233344556666
Q ss_pred CCCcHHHHHHHHHHHHH
Q 028300 161 TRENVEQCFEQLALKIM 177 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~~ 177 (211)
+.++-+++.+.|++++.
T Consensus 157 ~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 157 TPENRDSLPFEILNRLK 173 (174)
T ss_pred cchhhhhHHHHHHHHHh
Confidence 55666688888887654
No 405
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.97 E-value=2e-05 Score=63.51 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=47.5
Q ss_pred EEEEEEEeCCChhhhccc-hh-----hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 61 RLKLTIWDTAGQERFRTL-TS-----SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~-~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
.+.+.|+||+|....+.. .. ...-+.|.+++|+|+...+ +... +...+... -+ ..-+|.||.|...
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~-~a~~f~~~---v~-i~giIlTKlD~~~ 253 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ---DAVN-TAKTFNER---LG-LTGVVLTKLDGDA 253 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH---HHHH-HHHHHHhh---CC-CCEEEEeCccCcc
Confidence 356899999995332211 11 1123578899999987543 2222 22222211 11 3467899999632
Q ss_pred CcccCHHHHHHHHHHcCCeEEEeec
Q 028300 135 ERVVSREEGIALAKEHGSLFLECSA 159 (211)
Q Consensus 135 ~~~v~~~~~~~~~~~~~~~~~~~Sa 159 (211)
.. -.+.......++|+..+..
T Consensus 254 ~~----G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 254 RG----GAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred cc----cHHHHHHHHHCcCEEEEeC
Confidence 21 1245566667777655543
No 406
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=3.6e-05 Score=68.50 Aligned_cols=111 Identities=23% Similarity=0.162 Sum_probs=61.6
Q ss_pred EEEcCCCCcHHHHHHHHhhCCCCCC-------CCccceeeEEEEEEECCEEEEEEEEeCCC----hh----hhccchhhh
Q 028300 18 LLIGDSGVGKSSLLVSFISSSVDDL-------SPTIGVDFKIKLLTVAGKRLKLTIWDTAG----QE----RFRTLTSSY 82 (211)
Q Consensus 18 ~v~G~~~~GKssli~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----~~----~~~~~~~~~ 82 (211)
+|+|++|+||||++..-. ..|+.. ....+ +.... ..+ +-.-.++||.| ++ .....|..+
T Consensus 129 ~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~g-T~~cd-wwf---~deaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 129 MVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPG-TRNCD-WWF---TDEAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred EEecCCCCCcchHHhccc-ccCcchhhhccccccCCC-CcccC-ccc---ccceEEEcCCcceecccCcchhhHHHHHHH
Confidence 689999999999988543 333111 11112 11111 111 22456789888 21 122334433
Q ss_pred ---------ccCCcEEEEEEECCCh-----hhHHHHHHHHHH---HhhhhccCCCccEEEEeecCCCCCC
Q 028300 83 ---------YRGAQGIILVYDVTRR-----ETFTNLSDVWAK---EVDLYSTNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 83 ---------~~~~d~~i~v~d~~~~-----~s~~~~~~~~~~---~~~~~~~~~~~p~viv~nK~Dl~~~ 135 (211)
.+..+++|+.+|+.+. ..-+.....++. ++... ..-..|+++++||.|+...
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEeccccccc
Confidence 2456999999997652 212122211333 33332 3567899999999998653
No 407
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.94 E-value=2.8e-05 Score=62.39 Aligned_cols=153 Identities=15% Similarity=0.173 Sum_probs=77.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-----CC----CCC---------------ccceeeEEEEEE-------ECCEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-----DD----LSP---------------TIGVDFKIKLLT-------VAGKR 61 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-----~~----~~~---------------~~~~~~~~~~~~-------~~~~~ 61 (211)
..-+|+++|+.|+||||++..|.+... .. ... ..+.......-. ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 345899999999999999998865311 00 000 001111000000 00123
Q ss_pred EEEEEEeCCChhhhc----cchhhh--ccCCcEEEEEEECCC-hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 62 LKLTIWDTAGQERFR----TLTSSY--YRGAQGIILVYDVTR-RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
..+.++||+|..... .....+ .....-.++|+|++. .+.+.++.. ... .--+--+|+||.|...
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~----~f~-----~~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVIS----AYQ-----GHGIHGCIITKVDEAA 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHH----Hhc-----CCCCCEEEEEeeeCCC
Confidence 467899999944321 111222 123456789999884 433443332 111 1223468899999643
Q ss_pred CcccCHHHHHHHHHHcCCeEEEeeccCC--CcHHHH-HHHHHHHHHh
Q 028300 135 ERVVSREEGIALAKEHGSLFLECSAKTR--ENVEQC-FEQLALKIME 178 (211)
Q Consensus 135 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~--~gv~~l-~~~i~~~~~~ 178 (211)
. .-.+.......+.|+..++.=.+ +++... -..+.+.++.
T Consensus 341 ~----~G~~l~~~~~~~lPi~yvt~Gq~VP~Dl~~a~~~~lv~~ll~ 383 (420)
T PRK14721 341 S----LGIALDAVIRRKLVLHYVTNGQKVPEDLHEANSRYLLHRIFK 383 (420)
T ss_pred C----ccHHHHHHHHhCCCEEEEECCCCchhhhhhCCHHHHHHHHhc
Confidence 2 22344556666777655543222 222221 2445555555
No 408
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=0.00013 Score=60.01 Aligned_cols=136 Identities=17% Similarity=0.221 Sum_probs=69.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCC--------C-----CCCCC-----------ccceeeEEEEEE------E-CCE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSS--------V-----DDLSP-----------TIGVDFKIKLLT------V-AGK 60 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~--------~-----~~~~~-----------~~~~~~~~~~~~------~-~~~ 60 (211)
+..-.|+|+|+.|+||||++..|...- . +.+.. ..+..+....-. + ...
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 344588999999999999998886421 1 00000 011111100000 0 012
Q ss_pred EEEEEEEeCCChhhhccchhh---hc--cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300 61 RLKLTIWDTAGQERFRTLTSS---YY--RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~ 135 (211)
.+.+.|+|++|....+..... .+ ......++|++.+.. ..++.. ....+.. ..+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss--~~Dl~e-ii~~f~~-----~~~~gvILTKlDEt~- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAH--FSDLDE-VVRRFAH-----AKPQGVVLTKLDETG- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCC--hhHHHH-HHHHHHh-----hCCeEEEEecCcCcc-
Confidence 467899999995432211100 01 012346677776642 223222 2222211 245679999999632
Q ss_pred cccCHHHHHHHHHHcCCeEEEeec
Q 028300 136 RVVSREEGIALAKEHGSLFLECSA 159 (211)
Q Consensus 136 ~~v~~~~~~~~~~~~~~~~~~~Sa 159 (211)
..-.+.......+.|+..++.
T Consensus 499 ---~lG~aLsv~~~~~LPI~yvt~ 519 (559)
T PRK12727 499 ---RFGSALSVVVDHQMPITWVTD 519 (559)
T ss_pred ---chhHHHHHHHHhCCCEEEEeC
Confidence 223445556667777655543
No 409
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.86 E-value=3.9e-05 Score=54.11 Aligned_cols=135 Identities=20% Similarity=0.272 Sum_probs=62.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeC-CCh----------------------
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDT-AGQ---------------------- 72 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~-~g~---------------------- 72 (211)
+|.+.|++|+|||||+++++..-.....+..|. .+..+.-.+...-+.+.|+ .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf--~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~ 78 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGGF--YTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL 78 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEEE--EEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccceE--EeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence 689999999999999999885432221222222 2222223344444555555 220
Q ss_pred hhhccchhhhc----cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecC-CCCCCcccCHHHHHHHH
Q 028300 73 ERFRTLTSSYY----RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV-DRDSERVVSREEGIALA 147 (211)
Q Consensus 73 ~~~~~~~~~~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~-Dl~~~~~v~~~~~~~~~ 147 (211)
+.+.......+ ..+| ++|+|=--+-- .....|.+.+... -..++|++.++-+. +.. ....+.
T Consensus 79 e~fe~~~~~~L~~~~~~~~--liviDEIG~mE--l~~~~F~~~v~~~-l~s~~~vi~vv~~~~~~~--------~l~~i~ 145 (168)
T PF03266_consen 79 ESFEEIGLPALRNALSSSD--LIVIDEIGKME--LKSPGFREAVEKL-LDSNKPVIGVVHKRSDNP--------FLEEIK 145 (168)
T ss_dssp HHHHCCCCCCCHHHHHCCH--EEEE---STTC--CC-CHHHHHHHHH-HCTTSEEEEE--SS--SC--------CHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCC--EEEEeccchhh--hcCHHHHHHHHHH-HcCCCcEEEEEecCCCcH--------HHHHHH
Confidence 11222111122 3445 77888222110 0000133333332 23678888877776 321 122334
Q ss_pred HHcCCeEEEeeccCCCcH
Q 028300 148 KEHGSLFLECSAKTRENV 165 (211)
Q Consensus 148 ~~~~~~~~~~Sa~~~~gv 165 (211)
...++.+++++..+.+-+
T Consensus 146 ~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTTSEEEE--TTTCCCH
T ss_pred hCCCcEEEEeChhHHhhH
Confidence 445678888887776665
No 410
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.86 E-value=0.00034 Score=54.43 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=53.9
Q ss_pred EEEEEEeCCChhhhccchhhhcc--------CCcEEEEEEECCChhhHHH-HHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300 62 LKLTIWDTAGQERFRTLTSSYYR--------GAQGIILVYDVTRRETFTN-LSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~p~viv~nK~Dl 132 (211)
+...++++.|...-......+.. ..|+++-|+|+..-..... ........+.. .=+|++||+|+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-------AD~ivlNK~Dl 157 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF-------ADVIVLNKTDL 157 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh-------CcEEEEecccC
Confidence 45567788885544332222222 3488999999887433222 22323333321 12899999999
Q ss_pred CCCcccCHHHHHHHHHHc--CCeEEEeeccCCCcHHHHH
Q 028300 133 DSERVVSREEGIALAKEH--GSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 133 ~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~ 169 (211)
.+... ....+...++. .++++.++. .+.+..+++
T Consensus 158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll 193 (323)
T COG0523 158 VDAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL 193 (323)
T ss_pred CCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence 77654 33334444444 367888777 444444333
No 411
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.86 E-value=0.00019 Score=55.87 Aligned_cols=86 Identities=12% Similarity=0.127 Sum_probs=44.9
Q ss_pred EEEEEEeCCChhhhccchhhhcc--------CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 62 LKLTIWDTAGQERFRTLTSSYYR--------GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
....++++.|..+...+...+.. ..++++.|+|+.+-.....-.......+.. .=+|++||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------AD~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------CCEEEEeccccC
Confidence 45577888886554443333221 248899999987532211111111111211 128999999986
Q ss_pred CCcccCHHHHHHHHHHc--CCeEEEee
Q 028300 134 SERVVSREEGIALAKEH--GSLFLECS 158 (211)
Q Consensus 134 ~~~~v~~~~~~~~~~~~--~~~~~~~S 158 (211)
.+. +......+.. .++++.++
T Consensus 164 ~~~----~~~~~~l~~lnp~a~i~~~~ 186 (318)
T PRK11537 164 GEA----EKLRERLARINARAPVYTVV 186 (318)
T ss_pred CHH----HHHHHHHHHhCCCCEEEEec
Confidence 532 3344444443 35666554
No 412
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.86 E-value=5.6e-06 Score=64.57 Aligned_cols=85 Identities=22% Similarity=0.268 Sum_probs=58.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh--ccchhhhccCCc
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF--RTLTSSYYRGAQ 87 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~--~~~~~~~~~~~d 87 (211)
+....+.|+++|-|++||||+||.|.........|.+|.+-....+++ ...+-|+|+||.--. ++.....+ -
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL---mkrIfLIDcPGvVyps~dset~ivL---k 376 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL---MKRIFLIDCPGVVYPSSDSETDIVL---K 376 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH---HhceeEecCCCccCCCCCchHHHHh---h
Confidence 346789999999999999999999999999888898887654333332 235678899993211 12222222 3
Q ss_pred EEEEEEECCChhh
Q 028300 88 GIILVYDVTRRET 100 (211)
Q Consensus 88 ~~i~v~d~~~~~s 100 (211)
+++-|=.+.+++.
T Consensus 377 GvVRVenv~~pe~ 389 (572)
T KOG2423|consen 377 GVVRVENVKNPED 389 (572)
T ss_pred ceeeeeecCCHHH
Confidence 4566666666653
No 413
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.78 E-value=0.00021 Score=45.13 Aligned_cols=97 Identities=19% Similarity=0.131 Sum_probs=55.8
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc-hhhhccCCcEEEEEEEC
Q 028300 17 ILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL-TSSYYRGAQGIILVYDV 95 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~ 95 (211)
+++.|..|+||||+...+...-.. .+... ..++ .+.++|+++....... .......+|.++++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v----~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRV----LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeE----EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999999988754221 11111 1222 6888999986433221 24566778999999987
Q ss_pred CChhhHHHHHHHHHHHhhhhccCCCccEEEEee
Q 028300 96 TRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128 (211)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~n 128 (211)
+... ......... ...........+..++.|
T Consensus 69 ~~~~-~~~~~~~~~-~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 69 EALA-VLGARRLTE-VVLELAIEGLRPVGVVVN 99 (99)
T ss_pred chhh-HHHHHHHHH-HHHHhhccCCceEEEEeC
Confidence 7653 333333121 122222334555555544
No 414
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.76 E-value=4.8e-05 Score=57.68 Aligned_cols=61 Identities=20% Similarity=0.409 Sum_probs=44.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-----CCCCCccceeeEEEE-EEECCEEEEEEEEeCCCh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-----DDLSPTIGVDFKIKL-LTVAGKRLKLTIWDTAGQ 72 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~g~ 72 (211)
...++++.|+|-||+|||||||++..... ..+...+|.+..... +.+.++. .+.+.||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCC-ceEEecCCCc
Confidence 56789999999999999999998865442 445566676665544 5554444 3778899994
No 415
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.74 E-value=0.00024 Score=56.15 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=69.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCCC-----------ccceeeEEEEE--E-------EC-C
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-----------DDLSP-----------TIGVDFKIKLL--T-------VA-G 59 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-----------~~~~~-----------~~~~~~~~~~~--~-------~~-~ 59 (211)
...-.|+++|+.|+||||++..+...-. +.+.. ..+..+....- . .. .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 4455789999999999999998863210 11110 01111110000 0 00 0
Q ss_pred EEEEEEEEeCCChhhhccc----hhhhc--cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 60 KRLKLTIWDTAGQERFRTL----TSSYY--RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~----~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
....+.|+||+|....... ...+. .+.+.+++|.++... ..++.. + +..+ ..-.+--+|+||.|..
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~-i---~~~f--~~l~i~glI~TKLDET 355 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMT-I---LPKL--AEIPIDGFIITKMDET 355 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHH-H---HHhc--CcCCCCEEEEEcccCC
Confidence 2357899999996432211 11122 244666777776432 222222 2 2212 1122446789999964
Q ss_pred CCcccCHHHHHHHHHHcCCeEEEeec
Q 028300 134 SERVVSREEGIALAKEHGSLFLECSA 159 (211)
Q Consensus 134 ~~~~v~~~~~~~~~~~~~~~~~~~Sa 159 (211)
.. .-.+.......+.|+..++.
T Consensus 356 ~~----~G~~Lsv~~~tglPIsylt~ 377 (407)
T PRK12726 356 TR----IGDLYTVMQETNLPVLYMTD 377 (407)
T ss_pred CC----ccHHHHHHHHHCCCEEEEec
Confidence 22 22345556677777666554
No 416
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.68 E-value=5.5e-05 Score=55.29 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300 1 MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 1 ~~~~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~ 38 (211)
|+.+..-+... ...-|+|+|++|+|||||++.|....
T Consensus 1 ~~~~~~~~~~~-~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 1 MMNPWLFNKPA-KPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCccccCCCC-CCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 44444444444 44568889999999999999997543
No 417
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.68 E-value=0.0003 Score=57.01 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=55.6
Q ss_pred EEEEEEEeCCChhhhc----cchhhhcc---CCcEEEEEEECCCh-hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300 61 RLKLTIWDTAGQERFR----TLTSSYYR---GAQGIILVYDVTRR-ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl 132 (211)
...+.|+|++|..... .....++. ...-.++|++++.. ..+..+.. .+. ..+ +--+|+||.|.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~----~f~----~~~-~~~vI~TKlDe 369 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYK----HFS----RLP-LDGLIFTKLDE 369 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHH----HhC----CCC-CCEEEEecccc
Confidence 3578999999954332 11223333 33567788887653 33333322 111 112 23688999996
Q ss_pred CCCcccCHHHHHHHHHHcCCeEEEeeccCC--CcHHHH-HHHHHHHHHhc
Q 028300 133 DSERVVSREEGIALAKEHGSLFLECSAKTR--ENVEQC-FEQLALKIMEV 179 (211)
Q Consensus 133 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~--~gv~~l-~~~i~~~~~~~ 179 (211)
... .-.+..+....+.|+..++.=.+ +++... -.++.+.++..
T Consensus 370 t~~----~G~i~~~~~~~~lPv~yit~Gq~VpdDl~~a~~~~l~~~ll~~ 415 (424)
T PRK05703 370 TSS----LGSILSLLIESGLPISYLTNGQRVPDDIKVANPEELVRLLLGG 415 (424)
T ss_pred ccc----ccHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHHhcc
Confidence 332 22456667777888766654332 233221 13455555543
No 418
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=4.8e-05 Score=60.80 Aligned_cols=142 Identities=18% Similarity=0.208 Sum_probs=72.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-C-----------CCC-----------CccceeeEEEE-E-----EECCEEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-D-----------DLS-----------PTIGVDFKIKL-L-----TVAGKRLKL 64 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~-----------~~~-----------~~~~~~~~~~~-~-----~~~~~~~~~ 64 (211)
...|+++|++||||||++.+|..... . .+. ...+....... . .+......+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 34688999999999999999874220 0 000 01111111000 0 001124577
Q ss_pred EEEeCCChhhhc----cchhhhcc-----CCcEEEEEEECCChh-hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 65 TIWDTAGQERFR----TLTSSYYR-----GAQGIILVYDVTRRE-TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 65 ~l~D~~g~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
.++||+|..... ..+..+++ ...-.++|+|++... ....+.. ... .--+--+|+||.|...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~----~f~-----~~~~~glIlTKLDEt~ 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK----AYE-----SLNYRRILLTKLDEAD 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH----Hhc-----CCCCCEEEEEcccCCC
Confidence 899999954211 11122221 234678899988643 3333332 111 1123468899999643
Q ss_pred CcccCHHHHHHHHHHcCCeEEEeec--cCCCcHHHH
Q 028300 135 ERVVSREEGIALAKEHGSLFLECSA--KTRENVEQC 168 (211)
Q Consensus 135 ~~~v~~~~~~~~~~~~~~~~~~~Sa--~~~~gv~~l 168 (211)
. .-.+.......+.|+..++. .-.+++...
T Consensus 374 ~----~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~A 405 (432)
T PRK12724 374 F----LGSFLELADTYSKSFTYLSVGQEVPFDILNA 405 (432)
T ss_pred C----ccHHHHHHHHHCCCEEEEecCCCCCCCHHHh
Confidence 2 12245556666777655543 334455443
No 419
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.67 E-value=0.00022 Score=40.16 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=27.4
Q ss_pred cCCcEEEEEEECCChh--hHHHHHHHHHHHhhhhccCCCccEEEEeecCC
Q 028300 84 RGAQGIILVYDVTRRE--TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131 (211)
Q Consensus 84 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~D 131 (211)
.-.++++|++|++... ++++... ++..++.. -.++|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~-L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLS-LFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHH-HHHHHHHH--TTTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHH-HHHHHHHH--cCCCCEEEEEeccC
Confidence 3468999999999743 5666666 55555544 24899999999998
No 420
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.66 E-value=3.7e-05 Score=55.18 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~ 38 (211)
..-|+|+|++|||||||+++|....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3458999999999999999998754
No 421
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.66 E-value=4.5e-05 Score=50.62 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999865
No 422
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.64 E-value=0.00028 Score=45.51 Aligned_cols=79 Identities=16% Similarity=0.207 Sum_probs=48.1
Q ss_pred EEEEc-CCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300 17 ILLIG-DSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV 95 (211)
Q Consensus 17 I~v~G-~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (211)
|++.| ..|+||||+...+...-.....+..-.+ . +..+.+.++|+|+..... ....+..+|.++++++.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d-------~-d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLID-------L-DPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEe-------C-CCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 56777 5589999998877643211111111111 1 112678999999864322 33677789999999987
Q ss_pred CChhhHHHHHH
Q 028300 96 TRRETFTNLSD 106 (211)
Q Consensus 96 ~~~~s~~~~~~ 106 (211)
+.. ++..+..
T Consensus 72 ~~~-s~~~~~~ 81 (104)
T cd02042 72 SPL-DLDGLEK 81 (104)
T ss_pred CHH-HHHHHHH
Confidence 643 5555554
No 423
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.63 E-value=0.00019 Score=49.05 Aligned_cols=105 Identities=16% Similarity=0.152 Sum_probs=59.7
Q ss_pred EEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCCh
Q 028300 19 LIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR 98 (211)
Q Consensus 19 v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 98 (211)
.-|..|+|||++.-.+...-......+.-.+... ....-.+.+.++|+|+... ......+..+|.++++.+.+..
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~~ 79 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADL---GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEPT 79 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC---CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCChh
Confidence 4578899999997766532111111111111000 0001116789999997532 2345678899999999998744
Q ss_pred hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300 99 ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132 (211)
Q Consensus 99 ~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl 132 (211)
++..... ..+.+... ....++.+|+|+.+.
T Consensus 80 -s~~~~~~-~l~~l~~~--~~~~~~~lVvN~~~~ 109 (139)
T cd02038 80 -SITDAYA-LIKKLAKQ--LRVLNFRVVVNRAES 109 (139)
T ss_pred -HHHHHHH-HHHHHHHh--cCCCCEEEEEeCCCC
Confidence 4444443 33333222 235577899999974
No 424
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.60 E-value=5.6e-05 Score=53.79 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
||+|+|+|||||||+...|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999876
No 425
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.59 E-value=0.0023 Score=50.78 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=80.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccc-eeeEE-------------------EEEEEC----------CEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIG-VDFKI-------------------KLLTVA----------GKRL 62 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~-~~~~~-------------------~~~~~~----------~~~~ 62 (211)
.-.|+++||.||||||-+-.|..... .......+ .+... .....+ -...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 56789999999999999888875433 11111110 00000 000000 1234
Q ss_pred EEEEEeCCChhhhccc----hhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc
Q 028300 63 KLTIWDTAGQERFRTL----TSSYYR--GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER 136 (211)
Q Consensus 63 ~~~l~D~~g~~~~~~~----~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~ 136 (211)
.+.|+||.|...++.. ...++. ...-+.+|++++.. .+++.. ....+... + .--+++||.|...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlke-i~~~f~~~----~-i~~~I~TKlDET~-- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKE-IIKQFSLF----P-IDGLIFTKLDETT-- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHH-HHHHhccC----C-cceeEEEcccccC--
Confidence 6889999996654432 222332 23456678888864 233333 22222221 1 2257789999532
Q ss_pred ccCHHHHHHHHHHcCCeEEEee--ccCCCcHHHH-HHHHHHHHHhccchh
Q 028300 137 VVSREEGIALAKEHGSLFLECS--AKTRENVEQC-FEQLALKIMEVPSLL 183 (211)
Q Consensus 137 ~v~~~~~~~~~~~~~~~~~~~S--a~~~~gv~~l-~~~i~~~~~~~~~~~ 183 (211)
..-.........+.|+-.++ -.-.++|... -.++++.+.......
T Consensus 353 --s~G~~~s~~~e~~~PV~YvT~GQ~VPeDI~va~~~~Lv~~~~g~~~~~ 400 (407)
T COG1419 353 --SLGNLFSLMYETRLPVSYVTNGQRVPEDIVVANPDYLVRRILGTFANQ 400 (407)
T ss_pred --chhHHHHHHHHhCCCeEEEeCCCCCCchhhhcChHHHHHHHhcccccC
Confidence 22223344445555544443 2333444332 366777776665544
No 426
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.59 E-value=7.9e-05 Score=53.50 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFI 35 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~ 35 (211)
.+-+.|+||.||||||+.+.+.
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~ 24 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMY 24 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHH
Confidence 3557899999999999999886
No 427
>PRK08118 topology modulation protein; Reviewed
Probab=97.59 E-value=6.1e-05 Score=53.12 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
||+|+|++|||||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999854
No 428
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.54 E-value=3.8e-05 Score=54.12 Aligned_cols=46 Identities=28% Similarity=0.308 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKR 61 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (211)
.-+++.||+|+|||||++.|+... .-......+++..+....++.+
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~d 50 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVD 50 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCce
Confidence 457899999999999999999775 3222233344444444444433
No 429
>PRK07261 topology modulation protein; Provisional
Probab=97.53 E-value=7.9e-05 Score=52.79 Aligned_cols=22 Identities=45% Similarity=0.591 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
||+|+|++|||||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 430
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.51 E-value=7.2e-05 Score=52.53 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999866
No 431
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.50 E-value=0.00016 Score=59.04 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
.--|+++|+.|+||||.+..|..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 34689999999999999999874
No 432
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.49 E-value=9e-05 Score=50.67 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028300 17 ILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~ 37 (211)
|+++|+||||||||++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999844
No 433
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.48 E-value=0.00098 Score=45.21 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.-.+.+.|++|+|||+|++.+...-
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998764
No 434
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.45 E-value=0.002 Score=47.26 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=33.0
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCC-ccEEEEeecCCC
Q 028300 80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQD-CVKMLVGNKVDR 132 (211)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~p~viv~nK~Dl 132 (211)
+...+.+|.+|.|+|.+-. ++..+.. ..++.. ..+ .++.+|+||.|.
T Consensus 150 Rg~~~~vD~vivVvDpS~~-sl~taer-i~~L~~----elg~k~i~~V~NKv~e 197 (255)
T COG3640 150 RGTIEGVDLVIVVVDPSYK-SLRTAER-IKELAE----ELGIKRIFVVLNKVDE 197 (255)
T ss_pred cccccCCCEEEEEeCCcHH-HHHHHHH-HHHHHH----HhCCceEEEEEeeccc
Confidence 3456789999999999865 4444443 333333 335 899999999995
No 435
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.45 E-value=0.0022 Score=50.52 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=18.4
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028300 17 ILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~ 37 (211)
.++.|.-|||||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 567899999999999999854
No 436
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.00022 Score=61.23 Aligned_cols=152 Identities=16% Similarity=0.198 Sum_probs=77.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CC-C-------CCc---------------cceeeEEEEEE-------E-CCEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DD-L-------SPT---------------IGVDFKIKLLT-------V-AGKR 61 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~-~-------~~~---------------~~~~~~~~~~~-------~-~~~~ 61 (211)
.-.|+|+|+.|+||||.+..|..... .. . ..+ .+..+.... . + ...+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~-~~~~l~~al~~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVK-DAADLRFALAALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccC-CHHHHHHHHHHhcC
Confidence 34689999999999999999874321 10 0 000 011111000 0 0 0123
Q ss_pred EEEEEEeCCChhhhcc----chhhh--ccCCcEEEEEEECCC-hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 62 LKLTIWDTAGQERFRT----LTSSY--YRGAQGIILVYDVTR-RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
..+.|+||+|....+. ..... ....+-.++|+|++. .+.+.++...|.... .--+-=+|+||.|...
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~------~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGA------GEDVDGCIITKLDEAT 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcc------cCCCCEEEEeccCCCC
Confidence 4689999999332211 11111 234567889999875 333443332121110 0013468899999643
Q ss_pred CcccCHHHHHHHHHHcCCeEEEeeccCCCcH-HHHH----HHHHHHHHh
Q 028300 135 ERVVSREEGIALAKEHGSLFLECSAKTRENV-EQCF----EQLALKIME 178 (211)
Q Consensus 135 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv-~~l~----~~i~~~~~~ 178 (211)
. .-.+..+....+.|+..++. |.+| +++. +.+.+.++.
T Consensus 338 ~----~G~iL~i~~~~~lPI~yit~--GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 338 H----LGPALDTVIRHRLPVHYVST--GQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred C----ccHHHHHHHHHCCCeEEEec--CCCChhhcccCCHHHHHHHHhc
Confidence 2 22334555666777655543 3444 3332 445555554
No 437
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00012 Score=59.05 Aligned_cols=125 Identities=22% Similarity=0.272 Sum_probs=77.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCC------------C-CC--CCCccceeeEEEEEE----------------ECCEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSS------------V-DD--LSPTIGVDFKIKLLT----------------VAGKR 61 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~------------~-~~--~~~~~~~~~~~~~~~----------------~~~~~ 61 (211)
+--++.++.+..-|||||...|.... | +. .....+.+..+..+. -++.+
T Consensus 18 NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~ 97 (842)
T KOG0469|consen 18 NIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNG 97 (842)
T ss_pred ccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcc
Confidence 44567889999999999999986322 1 00 011122222222211 12346
Q ss_pred EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC-CCcccCH
Q 028300 62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD-SERVVSR 140 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~-~~~~v~~ 140 (211)
+.+.++|.|||-+|.+...+.++-.|+.+.|+|..+.--...- ..+.+.+.+ .+.-++++||.|.. -+-++..
T Consensus 98 FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~E-----RIkPvlv~NK~DRAlLELq~~~ 171 (842)
T KOG0469|consen 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE-----RIKPVLVMNKMDRALLELQLSQ 171 (842)
T ss_pred eeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHh-----hccceEEeehhhHHHHhhcCCH
Confidence 8899999999999999999999999999999998763211111 113333332 33337889999952 2334444
Q ss_pred HHH
Q 028300 141 EEG 143 (211)
Q Consensus 141 ~~~ 143 (211)
++.
T Consensus 172 EeL 174 (842)
T KOG0469|consen 172 EEL 174 (842)
T ss_pred HHH
Confidence 444
No 438
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.43 E-value=0.00015 Score=43.12 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028300 17 ILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~ 37 (211)
|++.|++|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998865
No 439
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.42 E-value=0.02 Score=40.14 Aligned_cols=145 Identities=17% Similarity=0.112 Sum_probs=98.3
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEE-eCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIW-DTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-D~~g~~~~~~~~~~~~~~~d 87 (211)
.+.-+...|.++|..+.++..|...+...+- ++. +++.+- -+|-..+.... =...|
T Consensus 10 lp~ln~atiLLVg~e~~~~~~LA~a~l~~~~---------~~~----------l~Vh~a~sLPLp~e~~~l----RprID 66 (176)
T PF11111_consen 10 LPELNTATILLVGTEEALLQQLAEAMLEEDK---------EFK----------LKVHLAKSLPLPSENNNL----RPRID 66 (176)
T ss_pred CCCcceeEEEEecccHHHHHHHHHHHHhhcc---------cee----------EEEEEeccCCCcccccCC----CceeE
Confidence 4566788999999999999999999986321 011 111111 11111111111 23579
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 167 (211)
.+++++|.....|+..+.. =+..+...... + .+.++++-..-.+...+...++.+++..+..|++.+.-.+..+...
T Consensus 67 lIVFvinl~sk~SL~~ve~-SL~~vd~~ffl-G-KVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~ 143 (176)
T PF11111_consen 67 LIVFVINLHSKYSLQSVEA-SLSHVDPSFFL-G-KVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTS 143 (176)
T ss_pred EEEEEEecCCcccHHHHHH-HHhhCChhhhc-c-ceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHH
Confidence 9999999999999988877 44444432122 2 3455566666556677888999999999999999999999988887
Q ss_pred HHHHHHHHHHhc
Q 028300 168 CFEQLALKIMEV 179 (211)
Q Consensus 168 l~~~i~~~~~~~ 179 (211)
+-..|++.+.-.
T Consensus 144 lAqRLL~~lqi~ 155 (176)
T PF11111_consen 144 LAQRLLRMLQIC 155 (176)
T ss_pred HHHHHHHHHHHH
Confidence 777777765543
No 440
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.42 E-value=0.00016 Score=57.42 Aligned_cols=121 Identities=19% Similarity=0.213 Sum_probs=65.6
Q ss_pred CCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCC----C-------CCCCC-----------ccceeeEEEE-----EE
Q 028300 4 SSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSS----V-------DDLSP-----------TIGVDFKIKL-----LT 56 (211)
Q Consensus 4 ~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~----~-------~~~~~-----------~~~~~~~~~~-----~~ 56 (211)
+...+.....+..|.++|..|+||||.+-.|...- . +.+.| ..+..++... +.
T Consensus 90 ~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~ 169 (451)
T COG0541 90 NSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVE 169 (451)
T ss_pred CcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHH
Confidence 34444556678899999999999999987775211 0 11111 0111111110 00
Q ss_pred E--------CCEEEEEEEEeCCChhhhccc------hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc
Q 028300 57 V--------AGKRLKLTIWDTAGQERFRTL------TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV 122 (211)
Q Consensus 57 ~--------~~~~~~~~l~D~~g~~~~~~~------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p 122 (211)
+ ....+.+.++||+|....+.. ...-.-++|=+++|+|+.-.+.-.+.-.-+...+...
T Consensus 170 Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~it------- 242 (451)
T COG0541 170 IAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGIT------- 242 (451)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCc-------
Confidence 0 012347899999994433221 1123457799999999887554433333244444321
Q ss_pred EEEEeecCCC
Q 028300 123 KMLVGNKVDR 132 (211)
Q Consensus 123 ~viv~nK~Dl 132 (211)
=||+||.|-
T Consensus 243 -GvIlTKlDG 251 (451)
T COG0541 243 -GVILTKLDG 251 (451)
T ss_pred -eEEEEcccC
Confidence 355666664
No 441
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.40 E-value=0.00075 Score=45.50 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998763
No 442
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.37 E-value=0.0017 Score=49.30 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=68.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-----------CCCC-----------CccceeeEEEEE------E---E-CCEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-----------DDLS-----------PTIGVDFKIKLL------T---V-AGKRL 62 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-----------~~~~-----------~~~~~~~~~~~~------~---~-~~~~~ 62 (211)
-+|+++|++|+||||++..+...-. +... ...+..+....- . . ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 5899999999999999887753211 0000 001111110000 0 0 01246
Q ss_pred EEEEEeCCChhhhcc-c---hhhhc--cCCcEEEEEEECCC-hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300 63 KLTIWDTAGQERFRT-L---TSSYY--RGAQGIILVYDVTR-RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 63 ~~~l~D~~g~~~~~~-~---~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~ 135 (211)
.+.++|++|....+. . +..++ ...+-.++|+|++. .+...+. ...+. .-.+--+|+||.|....
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~----~~~f~-----~~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI----ITNFK-----DIHIDGIVFTKFDETAS 226 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH----HHHhC-----CCCCCEEEEEeecCCCC
Confidence 789999999553211 1 11222 24567899999874 3222222 22211 12334788999996432
Q ss_pred cccCHHHHHHHHHHcCCeEEEee
Q 028300 136 RVVSREEGIALAKEHGSLFLECS 158 (211)
Q Consensus 136 ~~v~~~~~~~~~~~~~~~~~~~S 158 (211)
. -.+.......+.|+..++
T Consensus 227 --~--G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 227 --S--GELLKIPAVSSAPIVLMT 245 (270)
T ss_pred --c--cHHHHHHHHHCcCEEEEe
Confidence 1 223445556677755554
No 443
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.36 E-value=1.9e-05 Score=57.54 Aligned_cols=69 Identities=12% Similarity=0.062 Sum_probs=38.7
Q ss_pred EEEEEEEeCCChhhh----ccc--hhhhccCCcEEEEEEE------CCChhhHHHHHHHHHHHhhhhccCCCccEEEEee
Q 028300 61 RLKLTIWDTAGQERF----RTL--TSSYYRGAQGIILVYD------VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~----~~~--~~~~~~~~d~~i~v~d------~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~n 128 (211)
.-.+.++|+||+-++ ..+ ....+++.|.=+.++. .+++..|-...- ..+... .....|-+=|+.
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL---~sl~tM-l~melphVNvlS 171 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLL---VSLATM-LHMELPHVNVLS 171 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHH---HHHHHH-Hhhcccchhhhh
Confidence 346789999996442 111 2233445665555444 345655554432 222222 234778899999
Q ss_pred cCCCC
Q 028300 129 KVDRD 133 (211)
Q Consensus 129 K~Dl~ 133 (211)
|+|+.
T Consensus 172 K~Dl~ 176 (290)
T KOG1533|consen 172 KADLL 176 (290)
T ss_pred HhHHH
Confidence 99973
No 444
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.36 E-value=0.002 Score=52.81 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=29.9
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl 132 (211)
.+|+|=|+-+......... ++..+..+......|+|+++|-+-.
T Consensus 196 ~liLveDLPn~~~~d~~~~-f~evL~~y~s~g~~PlIf~iTd~~~ 239 (634)
T KOG1970|consen 196 KLILVEDLPNQFYRDDSET-FREVLRLYVSIGRCPLIFIITDSLS 239 (634)
T ss_pred eEEEeeccchhhhhhhHHH-HHHHHHHHHhcCCCcEEEEEecccc
Confidence 3577777666544444444 6666666767788999999988765
No 445
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.35 E-value=0.002 Score=53.48 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
-+++.||+|+||||.++.|...
T Consensus 47 iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4667899999999999988754
No 446
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.00018 Score=53.32 Aligned_cols=89 Identities=17% Similarity=0.301 Sum_probs=55.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECC-EEEEEEEEeCCChhhhccchhhhc--c--CC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAG-KRLKLTIWDTAGQERFRTLTSSYY--R--GA 86 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~--~--~~ 86 (211)
..+..|++.|..+ ||++|++.+..+-....++...+|..-...-.+ .+--..+|+++|......+..--+ . +.
T Consensus 43 ~~E~~I~~~Gn~~--~tt~I~~~FdR~e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~ 120 (363)
T KOG3929|consen 43 KFEFFIGSKGNGG--KTTIILRCFDRDEPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT 120 (363)
T ss_pred cceeEEEEecCCc--eeEeehhhcCcccCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh
Confidence 5677899999765 499999888776555566665555433322223 223458999998654433221111 1 12
Q ss_pred cEEEEEEECCChhhHH
Q 028300 87 QGIILVYDVTRRETFT 102 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~ 102 (211)
=.+|++.|++.++.+.
T Consensus 121 ~slIL~LDls~p~~~W 136 (363)
T KOG3929|consen 121 FSLILVLDLSKPNDLW 136 (363)
T ss_pred hhheeeeecCChHHHH
Confidence 3578999999987543
No 447
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.34 E-value=0.00023 Score=41.03 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
..+|.|+.|+|||||+..+.-.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999987643
No 448
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.00019 Score=56.11 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=56.7
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCC---------------------CccceeeEE-------EEE-----
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLS---------------------PTIGVDFKI-------KLL----- 55 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~---------------------~~~~~~~~~-------~~~----- 55 (211)
...++--|.++|..|+||||.+-.|....- ..+. .-.+..++. ..+
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv 176 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGV 176 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHH
Confidence 345556788999999999999887752110 0000 000111111 000
Q ss_pred -EECCEEEEEEEEeCCChhhh-ccchhh-----hccCCcEEEEEEECCChhhHHHHHHHHHHHhh
Q 028300 56 -TVAGKRLKLTIWDTAGQERF-RTLTSS-----YYRGAQGIILVYDVTRRETFTNLSDVWAKEVD 113 (211)
Q Consensus 56 -~~~~~~~~~~l~D~~g~~~~-~~~~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 113 (211)
.+..+.+.+.+.||.|.... ..+... -.-+.|-+|+|.|++-.+.-+....-+.+.+.
T Consensus 177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vd 241 (483)
T KOG0780|consen 177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVD 241 (483)
T ss_pred HHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhc
Confidence 11224578999999993321 222211 12357999999999976654444332555543
No 449
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.33 E-value=0.00018 Score=53.36 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=26.8
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~ 38 (211)
...-.+.++|++|+|++|||||+|+..++...
T Consensus 6 ~~~l~~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 6 RNSLLKDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred hhHhcCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 34456778999999999999999999998653
No 450
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00025 Score=51.35 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++||+|||||||++.+.+-+
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 68999999999999999988664
No 451
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.29 E-value=0.00023 Score=48.28 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++|+|+.|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 68999999999999999888763
No 452
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.28 E-value=0.0003 Score=50.16 Aligned_cols=23 Identities=39% Similarity=0.684 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.|+|+|++|||||||++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 48999999999999999998753
No 453
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.28 E-value=0.0011 Score=43.08 Aligned_cols=103 Identities=16% Similarity=0.121 Sum_probs=56.4
Q ss_pred EEEE-cCCCCcHHHHHHHHhhCCCCC-CCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300 17 ILLI-GDSGVGKSSLLVSFISSSVDD-LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD 94 (211)
Q Consensus 17 I~v~-G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (211)
|+++ +..|+||||+...|...-... .......+.. ... ...+.++|+|+..... ....+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d-----~~~-~~D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLD-----LQF-GDDYVVVDLGRSLDEV--SLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECC-----CCC-CCCEEEEeCCCCcCHH--HHHHHHHcCeEEEEec
Confidence 3443 456899999887775332211 1111111111 000 1168999999864322 3456788999999998
Q ss_pred CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeec
Q 028300 95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129 (211)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK 129 (211)
.+.. ++..+.. +.+.+..........+.+|+|+
T Consensus 74 ~~~~-s~~~~~~-~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QDLP-SIRNAKR-LLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CChH-HHHHHHH-HHHHHHHcCCCCcCceEEEecC
Confidence 7754 4555555 4555443311113456677764
No 454
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.27 E-value=0.00023 Score=52.28 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
-|+|+|++|||||||++-+.+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58999999999999999776543
No 455
>PRK06217 hypothetical protein; Validated
Probab=97.24 E-value=0.00029 Score=50.51 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
+|+|+|.+|||||||..+|...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999854
No 456
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.22 E-value=0.00029 Score=47.05 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028300 17 ILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~ 37 (211)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998865
No 457
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.21 E-value=0.00032 Score=47.07 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028300 17 ILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~ 37 (211)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999876
No 458
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.21 E-value=0.0046 Score=44.04 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~ 38 (211)
=.++++|+.|+|||||++.+.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 378999999999999999888754
No 459
>PRK14530 adenylate kinase; Provisional
Probab=97.21 E-value=0.00032 Score=51.64 Aligned_cols=21 Identities=33% Similarity=0.639 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
+|+|+|+|||||||+.+.|..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999864
No 460
>PLN02459 probable adenylate kinase
Probab=97.21 E-value=0.00047 Score=51.84 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=28.4
Q ss_pred CCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 3 SSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 3 ~~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
+-+..|.......+|+|+|+||+||||+...+..
T Consensus 18 ~~~~~~~~~~~~~~ii~~G~PGsGK~T~a~~la~ 51 (261)
T PLN02459 18 SACDRSLAKGRNVNWVFLGCPGVGKGTYASRLSK 51 (261)
T ss_pred ccccCCccccCccEEEEECCCCCCHHHHHHHHHH
Confidence 4456677777778999999999999999998874
No 461
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.19 E-value=0.00037 Score=47.60 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.|.|+|+.|+|||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999865
No 462
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.19 E-value=0.0013 Score=43.65 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~ 38 (211)
--|++-|+-|+|||||++.+...-
T Consensus 16 ~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc
Confidence 358899999999999999998644
No 463
>PLN02840 tRNA dimethylallyltransferase
Probab=97.18 E-value=0.004 Score=50.08 Aligned_cols=101 Identities=12% Similarity=0.092 Sum_probs=51.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
..-|+|.|++|||||+|...|...-.... +..+... .+.-+|++...- .....-.-.+.+|=++
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~~i------------is~Ds~q-vYr~~~IgTaKp---t~eE~~~V~Hhlidil 84 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNGEI------------ISADSVQ-VYRGLDVGSAKP---SLSERKEVPHHLIDIL 84 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCCCe------------Eeccccc-eecceeEEcCCC---CHHHHcCCCeEeEeec
Confidence 33589999999999999999986531111 1111100 112223222110 0111111234444455
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecC
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~ 130 (211)
|.++.-+...........+.......++|+++-+|-.
T Consensus 85 ~p~e~ySv~~F~~~A~~~I~~i~~rgkiPIvVGGTGl 121 (421)
T PLN02840 85 HPSDDYSVGAFFDDARRATQDILNRGRVPIVAGGTGL 121 (421)
T ss_pred CCCCceeHHHHHHHHHHHHHHHHhcCCCEEEEcCccH
Confidence 6666555444444344445544456788988777654
No 464
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.18 E-value=0.00035 Score=47.57 Aligned_cols=21 Identities=52% Similarity=0.808 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028300 17 ILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~ 37 (211)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999865
No 465
>PRK03839 putative kinase; Provisional
Probab=97.18 E-value=0.00037 Score=49.77 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
+|+++|+|||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998754
No 466
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.00032 Score=51.83 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
-|+++|++|+|||||++-+.+-.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999888654
No 467
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.17 E-value=0.0004 Score=46.75 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVD 40 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~ 40 (211)
-.++++|++|+|||+++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999876543
No 468
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.16 E-value=0.00084 Score=51.75 Aligned_cols=142 Identities=19% Similarity=0.260 Sum_probs=77.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCC------------------c----cceeeEEEE-------EEE-----
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP------------------T----IGVDFKIKL-------LTV----- 57 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~------------------~----~~~~~~~~~-------~~~----- 57 (211)
..++-|+|+|-.|+||||-|-.|.......... . .+..+-... +-+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 458899999999999999998886221100000 0 011111000 000
Q ss_pred -CCEEEEEEEEeCCChhhhcc-------chhhhccCC-----cEEEEEEECCCh-hhHHHHHHHHHHHhhhhccCCCccE
Q 028300 58 -AGKRLKLTIWDTAGQERFRT-------LTSSYYRGA-----QGIILVYDVTRR-ETFTNLSDVWAKEVDLYSTNQDCVK 123 (211)
Q Consensus 58 -~~~~~~~~l~D~~g~~~~~~-------~~~~~~~~~-----d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~ 123 (211)
..+.+.+.|+||+|...... -....+... +=++++.|++.. +++..++. +...+..-
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~-F~eav~l~-------- 287 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI-FNEAVGLD-------- 287 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH-HHHhcCCc--------
Confidence 01356789999999322111 012223333 338888898764 45555555 54444322
Q ss_pred EEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300 124 MLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC 168 (211)
Q Consensus 124 viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 168 (211)
-+++||.|....--+ +...+..+++|+..+-. |++++++
T Consensus 288 GiIlTKlDgtAKGG~----il~I~~~l~~PI~fiGv--GE~~~DL 326 (340)
T COG0552 288 GIILTKLDGTAKGGI----ILSIAYELGIPIKFIGV--GEGYDDL 326 (340)
T ss_pred eEEEEecccCCCcce----eeeHHHHhCCCEEEEeC--CCChhhc
Confidence 688999996433322 23456677888666532 5556555
No 469
>PRK04195 replication factor C large subunit; Provisional
Probab=97.15 E-value=0.0062 Score=50.46 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.-.+++.|++|+||||+++.+...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 446889999999999999999875
No 470
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.15 E-value=0.00037 Score=49.67 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.|+|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998765
No 471
>PRK08233 hypothetical protein; Provisional
Probab=97.14 E-value=0.00043 Score=49.36 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..-|+|.|++|||||||.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 367899999999999999999854
No 472
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.14 E-value=0.00042 Score=49.80 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.|+|+|++|+|||||++.|...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999765
No 473
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.13 E-value=0.00048 Score=50.45 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.....|+|.|++|||||||.+.|...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999998864
No 474
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.0037 Score=45.10 Aligned_cols=119 Identities=15% Similarity=0.239 Sum_probs=60.6
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC---hhhhc-----cchhhhccCCcE
Q 028300 17 ILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG---QERFR-----TLTSSYYRGAQG 88 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g---~~~~~-----~~~~~~~~~~d~ 88 (211)
|++.|.||||||||.+.|...--.........+ ..-....+||-.- .+.|+ ...+......+-
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~---------kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalkn 74 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLE---------KDYLRGILWDESLPILKEVYRESFLKSVERLLDSALKN 74 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccc---------hhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 688999999999999988743211111111110 0111234555332 11121 111222222334
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC--------CCCcccCHHHHHHHHHHc
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR--------DSERVVSREEGIALAKEH 150 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl--------~~~~~v~~~~~~~~~~~~ 150 (211)
.+.++|.++ .+..++..+.-+. .....+.-||-.++-+ .....++.+...++...+
T Consensus 75 ~~VIvDdtN--YyksmRrqL~cea----k~~~tt~ciIyl~~plDtc~rrN~ergepip~Evl~qly~Rf 138 (261)
T COG4088 75 YLVIVDDTN--YYKSMRRQLACEA----KERKTTWCIIYLRTPLDTCLRRNRERGEPIPEEVLRQLYDRF 138 (261)
T ss_pred eEEEEeccc--HHHHHHHHHHHHH----HhcCCceEEEEEccCHHHHHHhhccCCCCCCHHHHHHHHHhh
Confidence 455556554 3445444333333 3457778888877765 234556777777776654
No 475
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.12 E-value=0.00056 Score=48.32 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~ 38 (211)
=+++|+|++|+|||||+|-+.+-.
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhcc
Confidence 378999999999999999887554
No 476
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.11 E-value=0.00043 Score=50.24 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028300 17 ILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~ 37 (211)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999765
No 477
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.10 E-value=0.00041 Score=49.70 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
..|+++|++||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999973
No 478
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.10 E-value=0.00056 Score=50.01 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=22.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
+....|+|.|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999864
No 479
>PRK13949 shikimate kinase; Provisional
Probab=97.10 E-value=0.00051 Score=48.58 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
+|+++|++||||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988754
No 480
>PRK10646 ADP-binding protein; Provisional
Probab=97.09 E-value=0.0042 Score=42.89 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
-|++-|+-|+|||||++.+...-
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~L 52 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQAL 52 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998653
No 481
>PRK01889 GTPase RsgA; Reviewed
Probab=97.07 E-value=0.00057 Score=54.19 Aligned_cols=25 Identities=40% Similarity=0.693 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV 39 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~ 39 (211)
-+++++|.+|+|||||++.+.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 3799999999999999999987543
No 482
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.07 E-value=0.0021 Score=46.63 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028300 17 ILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~~ 38 (211)
|+|.|++||||||+++.++...
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887653
No 483
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.06 E-value=0.00052 Score=44.34 Aligned_cols=21 Identities=43% Similarity=0.854 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 028300 15 FKILLIGDSGVGKSSLLVSFI 35 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~ 35 (211)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 468999999999999999876
No 484
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.06 E-value=0.00046 Score=50.94 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028300 17 ILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~ 37 (211)
|+|.|++|||||||++.|.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 789999999999999988864
No 485
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.06 E-value=0.0074 Score=42.74 Aligned_cols=84 Identities=12% Similarity=0.020 Sum_probs=49.0
Q ss_pred EEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHH
Q 028300 63 KLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREE 142 (211)
Q Consensus 63 ~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~ 142 (211)
.+.++|+|+..... ....+..+|.+|++++.+.. ++..+.. +...+... ......+|+|+.+..... ..+.
T Consensus 64 d~viiD~p~~~~~~--~~~~l~~ad~viiv~~~~~~-s~~~~~~-~~~~~~~~---~~~~~~iv~N~~~~~~~~--~~~~ 134 (179)
T cd02036 64 DYILIDSPAGIERG--FITAIAPADEALLVTTPEIS-SLRDADR-VKGLLEAL---GIKVVGVIVNRVRPDMVE--GGDM 134 (179)
T ss_pred CEEEEECCCCCcHH--HHHHHHhCCcEEEEeCCCcc-hHHHHHH-HHHHHHHc---CCceEEEEEeCCcccccc--hhhH
Confidence 68999999754322 34556789999999987754 3444444 44444332 234577899999864322 1121
Q ss_pred HHHHHHHcCCeEE
Q 028300 143 GIALAKEHGSLFL 155 (211)
Q Consensus 143 ~~~~~~~~~~~~~ 155 (211)
...+.+.++.+++
T Consensus 135 ~~~~~~~~~~~v~ 147 (179)
T cd02036 135 VEDIEEILGVPLL 147 (179)
T ss_pred HHHHHHHhCCCEE
Confidence 2333444565543
No 486
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.05 E-value=0.00059 Score=48.54 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFI 35 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~ 35 (211)
..--.++++|+.|+|||||++.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
Confidence 344478999999999999999875
No 487
>PLN02200 adenylate kinase family protein
Probab=97.04 E-value=0.00086 Score=49.98 Aligned_cols=26 Identities=19% Similarity=0.460 Sum_probs=22.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.....|+|+|+|||||||+...|...
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999988743
No 488
>PRK14531 adenylate kinase; Provisional
Probab=97.04 E-value=0.00058 Score=48.92 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..+|+++|+|||||||+...+...
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999988644
No 489
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=97.03 E-value=0.00034 Score=57.03 Aligned_cols=57 Identities=21% Similarity=0.336 Sum_probs=38.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEEC---CEEEEEEEEeCCC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVA---GKRLKLTIWDTAG 71 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~D~~g 71 (211)
--|+|+|+..+|||||+|.|++..|..-....|...+.+.+++. +....+.+.|+-|
T Consensus 38 hVVavmG~QSSGKSTLLN~LFgTnF~~MDA~~gRqQTTKGIWlar~~~i~p~i~vmDvEG 97 (772)
T KOG2203|consen 38 HVVAVMGSQSSGKSTLLNHLFGTNFREMDAFKGRQQTTKGIWLARCAGIEPCILVMDVEG 97 (772)
T ss_pred eEEEEecCcccchHHHHHHHhccChHHHHhhhccccccchhhHHhhcCCCCceEEEeccc
Confidence 35799999999999999999999985554445544444444442 2222355667665
No 490
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.03 E-value=0.00077 Score=47.61 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
...-++|+|++|||||||++++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3457899999999999999999865
No 491
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.00055 Score=50.23 Aligned_cols=21 Identities=48% Similarity=0.689 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
.|+++|++|+|||||++.+.+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 589999999999999999886
No 492
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.03 E-value=0.0014 Score=53.24 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=52.6
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300 82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT 161 (211)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 161 (211)
.+..+|++|.++|+.++--|.... +...+.. ....+..++++||+||....+ .....++....+++++..||..
T Consensus 171 VlErSDivvqIVDARnPllfr~~d--Le~Yvke--~d~~K~~~LLvNKaDLl~~~q--r~aWa~YF~~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 171 VLERSDIVVQIVDARNPLLFRSPD--LEDYVKE--VDPSKANVLLVNKADLLPPEQ--RVAWAEYFRQNNIPVVFFSALA 244 (562)
T ss_pred HHhhcceEEEEeecCCccccCChh--HHHHHhc--cccccceEEEEehhhcCCHHH--HHHHHHHHHhcCceEEEEeccc
Confidence 578899999999999975433221 1222221 234577899999999976653 3445677888889999999877
No 493
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.01 E-value=0.00066 Score=48.76 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.-.++++|++|+|||||++.+++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347899999999999999998865
No 494
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.00 E-value=0.00052 Score=49.48 Aligned_cols=22 Identities=32% Similarity=0.570 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
+|+|+|+|||||||+...|...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 495
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.00 E-value=0.00063 Score=50.47 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..+|+|+|+|||||||+...|...
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998643
No 496
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.99 E-value=0.00061 Score=51.10 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
-++++||.|+|||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 468999999999999999985
No 497
>PRK14532 adenylate kinase; Provisional
Probab=96.99 E-value=0.00069 Score=48.69 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
+|+++|+|||||||+..+|...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999743
No 498
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.00066 Score=47.39 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028300 16 KILLIGDSGVGKSSLLVSFI 35 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~ 35 (211)
+|+|.|.||+||||+.++|.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 69999999999999999988
No 499
>PRK08356 hypothetical protein; Provisional
Probab=96.97 E-value=0.00098 Score=48.26 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
..|+++|+|||||||+.+.|..
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999954
No 500
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.97 E-value=0.00058 Score=50.07 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
||+|+|+|||||||+...|..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999874
Done!