Query 028300
Match_columns 211
No_of_seqs 149 out of 1699
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 15:20:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.9E-44 6.6E-49 263.6 18.4 207 1-211 1-208 (216)
2 2bcg_Y Protein YP2, GTP-bindin 100.0 2.7E-37 9.4E-42 224.8 24.7 172 10-183 4-176 (206)
3 2bov_A RAla, RAS-related prote 100.0 7.3E-37 2.5E-41 222.4 21.0 180 1-182 1-181 (206)
4 3cpj_B GTP-binding protein YPT 100.0 3.5E-36 1.2E-40 221.6 20.6 180 1-183 1-181 (223)
5 1vg8_A RAS-related protein RAB 100.0 2.8E-36 9.6E-41 219.5 19.1 198 11-211 5-207 (207)
6 3tkl_A RAS-related protein RAB 100.0 2E-34 6.9E-39 207.9 23.3 174 8-183 10-184 (196)
7 2a5j_A RAS-related protein RAB 100.0 9.5E-35 3.2E-39 209.0 21.5 171 7-179 14-185 (191)
8 1zbd_A Rabphilin-3A; G protein 100.0 1.8E-34 6.2E-39 209.4 22.4 170 9-180 3-173 (203)
9 1z0f_A RAB14, member RAS oncog 100.0 2.6E-34 8.9E-39 204.2 21.5 168 9-178 10-178 (179)
10 2j0v_A RAC-like GTP-binding pr 100.0 6.1E-35 2.1E-39 213.3 18.5 195 11-210 6-210 (212)
11 2ew1_A RAS-related protein RAB 100.0 2.4E-34 8.3E-39 208.5 21.1 170 9-180 21-191 (201)
12 2nzj_A GTP-binding protein REM 100.0 2.5E-34 8.6E-39 203.7 20.6 168 12-180 2-171 (175)
13 3kkq_A RAS-related protein M-R 100.0 5.6E-34 1.9E-38 203.5 22.3 168 9-178 13-182 (183)
14 3t5g_A GTP-binding protein RHE 100.0 4.4E-34 1.5E-38 203.7 21.7 169 11-181 3-172 (181)
15 1x3s_A RAS-related protein RAB 100.0 8.5E-34 2.9E-38 204.4 23.1 175 9-185 10-185 (195)
16 2fu5_C RAS-related protein RAB 100.0 9.2E-35 3.2E-39 207.6 17.8 170 10-181 4-174 (183)
17 2gf9_A RAS-related protein RAB 100.0 6.7E-34 2.3E-38 204.3 22.4 171 7-179 15-186 (189)
18 2hup_A RAS-related protein RAB 100.0 2.9E-34 9.8E-39 208.2 20.1 171 8-180 23-195 (201)
19 2oil_A CATX-8, RAS-related pro 100.0 5.2E-34 1.8E-38 205.4 21.3 170 9-180 20-190 (193)
20 3q72_A GTP-binding protein RAD 100.0 2.9E-34 1E-38 201.7 19.5 164 14-179 2-165 (166)
21 2g6b_A RAS-related protein RAB 100.0 1.1E-33 3.7E-38 201.4 22.6 171 8-180 4-176 (180)
22 3tw8_B RAS-related protein RAB 100.0 6.5E-34 2.2E-38 202.5 21.4 170 10-182 5-175 (181)
23 2fg5_A RAB-22B, RAS-related pr 100.0 2.3E-34 7.8E-39 207.2 19.2 171 7-179 16-187 (192)
24 2efe_B Small GTP-binding prote 100.0 1.1E-33 3.7E-38 201.6 22.4 170 9-180 7-177 (181)
25 4dsu_A GTPase KRAS, isoform 2B 100.0 1.1E-33 3.8E-38 202.8 22.4 169 12-183 2-171 (189)
26 3reg_A RHO-like small GTPase; 100.0 1.2E-33 4E-38 203.8 22.4 173 6-181 15-191 (194)
27 1r2q_A RAS-related protein RAB 100.0 7E-34 2.4E-38 200.3 20.8 165 11-177 3-168 (170)
28 2bme_A RAB4A, RAS-related prot 100.0 7.8E-34 2.7E-38 203.2 21.3 170 9-180 5-175 (186)
29 1z08_A RAS-related protein RAB 100.0 4.9E-34 1.7E-38 201.3 19.9 167 10-178 2-169 (170)
30 1z0j_A RAB-22, RAS-related pro 100.0 1.3E-33 4.5E-38 199.0 21.9 165 11-177 3-168 (170)
31 2o52_A RAS-related protein RAB 100.0 5.3E-34 1.8E-38 206.6 20.0 171 9-181 20-191 (200)
32 3oes_A GTPase rhebl1; small GT 100.0 3.9E-34 1.3E-38 207.5 17.8 173 8-182 18-191 (201)
33 1ek0_A Protein (GTP-binding pr 100.0 1.6E-33 5.4E-38 198.5 20.3 163 13-177 2-168 (170)
34 2fn4_A P23, RAS-related protei 100.0 2.7E-33 9.1E-38 199.3 21.1 168 11-180 6-174 (181)
35 2f7s_A C25KG, RAS-related prot 100.0 4.6E-34 1.6E-38 209.3 17.6 172 9-181 20-202 (217)
36 2il1_A RAB12; G-protein, GDP, 100.0 1.1E-33 3.6E-38 203.8 18.9 169 8-178 20-190 (192)
37 3dz8_A RAS-related protein RAB 100.0 7.7E-35 2.6E-39 209.5 12.9 172 7-180 16-188 (191)
38 3cbq_A GTP-binding protein REM 100.0 1.4E-33 4.7E-38 203.7 19.4 172 8-180 17-190 (195)
39 1z2a_A RAS-related protein RAB 100.0 1.9E-33 6.6E-38 197.8 19.6 164 12-178 3-167 (168)
40 3bc1_A RAS-related protein RAB 100.0 2.5E-33 8.6E-38 201.6 20.6 172 9-181 6-188 (195)
41 1z06_A RAS-related protein RAB 100.0 1.9E-33 6.5E-38 201.9 19.9 168 10-178 16-188 (189)
42 3q3j_B RHO-related GTP-binding 100.0 1.5E-33 5E-38 206.4 19.3 173 7-182 20-207 (214)
43 3q85_A GTP-binding protein REM 100.0 1.8E-33 6E-38 198.3 19.1 165 14-179 2-168 (169)
44 2a9k_A RAS-related protein RAL 100.0 2.3E-33 8E-38 200.7 19.8 171 8-180 12-183 (187)
45 1g16_A RAS-related protein SEC 100.0 2.8E-33 9.5E-38 197.3 19.8 164 13-179 2-166 (170)
46 2y8e_A RAB-protein 6, GH09086P 100.0 2.5E-33 8.6E-38 199.1 19.5 165 12-178 12-177 (179)
47 2g3y_A GTP-binding protein GEM 100.0 3.5E-33 1.2E-37 203.4 20.6 171 9-180 32-205 (211)
48 3c5c_A RAS-like protein 12; GD 100.0 2.4E-33 8.1E-38 201.2 19.3 168 8-178 15-186 (187)
49 1u8z_A RAS-related protein RAL 100.0 4.2E-33 1.4E-37 195.8 20.3 164 13-178 3-167 (168)
50 2gf0_A GTP-binding protein DI- 100.0 1.7E-33 5.9E-38 203.4 18.6 167 12-181 6-174 (199)
51 2p5s_A RAS and EF-hand domain 100.0 1.7E-33 5.7E-38 203.8 17.8 168 9-178 23-197 (199)
52 1wms_A RAB-9, RAB9, RAS-relate 100.0 1.6E-32 5.4E-37 194.8 22.5 168 10-179 3-175 (177)
53 2hxs_A RAB-26, RAS-related pro 100.0 2E-33 6.7E-38 199.7 17.8 169 11-180 3-175 (178)
54 3ihw_A Centg3; RAS, centaurin, 100.0 9E-33 3.1E-37 197.7 20.9 166 7-180 13-182 (184)
55 2atx_A Small GTP binding prote 100.0 1.3E-32 4.5E-37 198.2 21.9 167 9-178 13-193 (194)
56 1kao_A RAP2A; GTP-binding prot 100.0 4.4E-33 1.5E-37 195.6 18.7 164 13-178 2-166 (167)
57 1c1y_A RAS-related protein RAP 100.0 5E-33 1.7E-37 195.5 18.9 163 13-177 2-166 (167)
58 3cph_A RAS-related protein SEC 100.0 1.2E-32 3.9E-37 201.2 21.1 172 6-180 12-184 (213)
59 2iwr_A Centaurin gamma 1; ANK 100.0 1.3E-32 4.6E-37 195.5 20.2 164 11-181 4-172 (178)
60 2atv_A RERG, RAS-like estrogen 100.0 8.3E-33 2.9E-37 199.7 19.1 169 10-181 24-194 (196)
61 2q3h_A RAS homolog gene family 100.0 1.7E-32 5.9E-37 198.7 20.2 171 8-181 14-198 (201)
62 3con_A GTPase NRAS; structural 100.0 5.8E-32 2E-36 194.2 22.6 172 7-181 14-186 (190)
63 2gco_A H9, RHO-related GTP-bin 100.0 7.2E-32 2.4E-36 195.5 23.0 167 9-178 20-200 (201)
64 1m7b_A RND3/RHOE small GTP-bin 100.0 2.1E-32 7.1E-37 195.7 19.1 165 11-178 4-183 (184)
65 3clv_A RAB5 protein, putative; 100.0 6.3E-32 2.2E-36 195.9 21.8 164 11-179 4-205 (208)
66 1mh1_A RAC1; GTP-binding, GTPa 100.0 6.2E-32 2.1E-36 193.1 21.2 167 12-181 3-183 (186)
67 1ky3_A GTP-binding protein YPT 100.0 1.5E-32 5E-37 195.7 17.6 169 11-180 5-180 (182)
68 1gwn_A RHO-related GTP-binding 100.0 2.2E-32 7.6E-37 198.8 18.8 166 10-178 24-204 (205)
69 2ce2_X GTPase HRAS; signaling 100.0 1.7E-31 5.8E-36 187.1 21.6 162 14-178 3-165 (166)
70 2yc2_C IFT27, small RAB-relate 100.0 3.9E-33 1.3E-37 202.8 13.6 170 11-181 17-195 (208)
71 2j1l_A RHO-related GTP-binding 100.0 5.4E-32 1.8E-36 198.1 19.4 166 12-180 32-211 (214)
72 4djt_A GTP-binding nuclear pro 100.0 1.6E-32 5.4E-37 201.3 16.6 174 9-184 6-181 (218)
73 2erx_A GTP-binding protein DI- 100.0 4.9E-32 1.7E-36 191.2 17.6 165 13-179 2-168 (172)
74 2fv8_A H6, RHO-related GTP-bin 100.0 2.1E-31 7.1E-36 194.0 21.0 167 11-180 22-202 (207)
75 2cjw_A GTP-binding protein GEM 100.0 2.4E-31 8.1E-36 191.5 19.7 168 12-180 4-174 (192)
76 3bwd_D RAC-like GTP-binding pr 100.0 1.4E-32 4.9E-37 195.9 12.6 166 10-178 4-181 (182)
77 1upt_A ARL1, ADP-ribosylation 100.0 7.7E-32 2.6E-36 190.2 15.6 161 12-179 5-170 (171)
78 3gj0_A GTP-binding nuclear pro 100.0 4.5E-32 1.5E-36 199.4 14.5 170 8-182 9-179 (221)
79 3l0i_B RAS-related protein RAB 100.0 5.4E-34 1.9E-38 206.4 4.1 168 10-179 29-197 (199)
80 4gzl_A RAS-related C3 botulinu 100.0 1.9E-31 6.6E-36 193.7 17.4 163 11-176 27-203 (204)
81 3t1o_A Gliding protein MGLA; G 100.0 6.1E-32 2.1E-36 194.9 14.2 168 9-181 9-195 (198)
82 4bas_A ADP-ribosylation factor 100.0 8.6E-32 2.9E-36 194.5 14.5 171 6-180 9-191 (199)
83 1r8s_A ADP-ribosylation factor 100.0 3E-32 1E-36 191.1 11.6 157 15-178 1-162 (164)
84 1m2o_B GTP-binding protein SAR 100.0 1.1E-30 3.7E-35 187.8 18.4 157 12-175 21-189 (190)
85 1zd9_A ADP-ribosylation factor 100.0 6.9E-32 2.4E-36 193.6 12.0 163 10-179 18-186 (188)
86 1f6b_A SAR1; gtpases, N-termin 100.0 5.1E-31 1.7E-35 190.7 16.1 157 12-175 23-196 (198)
87 2h17_A ADP-ribosylation factor 100.0 2.1E-31 7.1E-36 190.0 13.8 162 7-175 14-180 (181)
88 2h57_A ADP-ribosylation factor 100.0 1.2E-30 4E-35 187.5 16.3 164 9-179 16-188 (190)
89 1ksh_A ARF-like protein 2; sma 100.0 3.6E-30 1.2E-34 184.2 18.7 161 12-179 16-181 (186)
90 2b6h_A ADP-ribosylation factor 100.0 1.3E-31 4.5E-36 192.8 11.0 161 11-178 26-191 (192)
91 2f9l_A RAB11B, member RAS onco 100.0 1.5E-29 5.1E-34 183.0 21.8 168 11-180 2-170 (199)
92 2x77_A ADP-ribosylation factor 100.0 2.3E-31 7.7E-36 191.0 10.7 162 12-180 20-186 (189)
93 1zj6_A ADP-ribosylation factor 100.0 2.3E-30 7.7E-35 185.5 15.6 163 12-181 14-181 (187)
94 1fzq_A ADP-ribosylation factor 100.0 5E-31 1.7E-35 188.1 12.1 160 12-178 14-178 (181)
95 1moz_A ARL1, ADP-ribosylation 100.0 1.2E-30 4E-35 186.2 10.8 162 12-180 16-182 (183)
96 1oix_A RAS-related protein RAB 100.0 1.1E-28 3.8E-33 177.4 20.7 166 9-176 24-190 (191)
97 3llu_A RAS-related GTP-binding 100.0 4.1E-30 1.4E-34 185.5 12.1 164 7-176 13-195 (196)
98 2wkq_A NPH1-1, RAS-related C3 100.0 1.4E-28 4.6E-33 191.0 20.5 164 12-178 153-330 (332)
99 2zej_A Dardarin, leucine-rich 100.0 9.2E-30 3.1E-34 182.0 11.0 164 14-180 2-180 (184)
100 3th5_A RAS-related C3 botulinu 99.9 1E-31 3.5E-36 195.1 0.0 162 12-176 28-203 (204)
101 3o47_A ADP-ribosylation factor 100.0 8.1E-30 2.8E-34 197.5 9.7 162 11-179 162-328 (329)
102 2fh5_B SR-beta, signal recogni 100.0 4.2E-28 1.4E-32 177.2 16.3 162 12-175 5-213 (214)
103 3lvq_E ARF-GAP with SH3 domain 100.0 8.4E-29 2.9E-33 202.0 12.7 165 11-182 319-488 (497)
104 3c5h_A Glucocorticoid receptor 100.0 4.6E-29 1.6E-33 187.0 7.8 169 6-177 11-254 (255)
105 2lkc_A Translation initiation 100.0 3.1E-27 1E-31 167.6 16.5 162 9-181 3-174 (178)
106 2wji_A Ferrous iron transport 100.0 1E-27 3.5E-32 168.4 13.0 153 13-176 2-163 (165)
107 3r7w_A Gtpase1, GTP-binding pr 100.0 9E-28 3.1E-32 184.5 13.5 164 13-181 2-184 (307)
108 3iev_A GTP-binding protein ERA 100.0 3.2E-27 1.1E-31 181.4 16.0 174 7-185 3-189 (308)
109 2qu8_A Putative nucleolar GTP- 100.0 1.2E-27 4.2E-32 176.5 13.1 165 12-181 27-208 (228)
110 1svi_A GTP-binding protein YSX 100.0 1.2E-27 4.1E-32 172.2 12.5 160 9-177 18-194 (195)
111 2cxx_A Probable GTP-binding pr 99.9 2.3E-27 7.9E-32 170.0 11.3 158 15-181 2-187 (190)
112 3pqc_A Probable GTP-binding pr 99.9 2.2E-26 7.6E-31 165.4 14.1 163 7-178 16-194 (195)
113 2dyk_A GTP-binding protein; GT 99.9 3.2E-27 1.1E-31 164.8 9.3 149 15-176 2-160 (161)
114 3r7w_B Gtpase2, GTP-binding pr 99.9 4.7E-28 1.6E-32 184.7 5.0 161 16-186 1-182 (331)
115 2wjg_A FEOB, ferrous iron tran 99.9 1.6E-26 5.5E-31 165.4 12.5 157 13-180 6-171 (188)
116 3a1s_A Iron(II) transport prot 99.9 9.9E-27 3.4E-31 174.4 10.9 156 12-177 3-166 (258)
117 2gj8_A MNME, tRNA modification 99.9 3.3E-27 1.1E-31 167.0 6.1 154 13-178 3-166 (172)
118 3dpu_A RAB family protein; roc 99.9 1.1E-26 3.6E-31 191.0 9.2 166 10-181 37-211 (535)
119 4dhe_A Probable GTP-binding pr 99.9 6.6E-26 2.2E-30 166.5 11.5 166 9-180 24-213 (223)
120 3b1v_A Ferrous iron uptake tra 99.9 2.8E-26 9.6E-31 172.9 9.4 155 13-178 2-164 (272)
121 3iby_A Ferrous iron transport 99.9 1.8E-25 6E-30 167.3 10.1 150 15-175 2-164 (256)
122 1wf3_A GTP-binding protein; GT 99.9 3.6E-25 1.2E-29 169.2 11.7 164 12-183 5-178 (301)
123 3i8s_A Ferrous iron transport 99.9 5.5E-26 1.9E-30 171.9 5.7 157 13-179 2-170 (274)
124 3k53_A Ferrous iron transport 99.9 2.7E-25 9.1E-30 168.0 9.2 158 13-180 2-168 (271)
125 3gee_A MNME, tRNA modification 99.9 6.5E-25 2.2E-29 176.9 11.2 157 12-177 231-397 (476)
126 2hjg_A GTP-binding protein ENG 99.9 2.4E-25 8.1E-30 178.7 8.0 161 12-180 173-351 (436)
127 4dcu_A GTP-binding protein ENG 99.9 7.8E-25 2.7E-29 176.6 8.4 163 11-181 192-372 (456)
128 1nrj_B SR-beta, signal recogni 99.9 5.1E-25 1.7E-29 161.3 5.8 151 9-164 7-170 (218)
129 1ega_A Protein (GTP-binding pr 99.9 1.4E-23 4.9E-28 160.6 11.8 165 12-183 6-180 (301)
130 2e87_A Hypothetical protein PH 99.9 2.9E-23 1E-27 162.5 13.5 162 12-180 165-338 (357)
131 1xzp_A Probable tRNA modificat 99.9 5.5E-24 1.9E-28 171.6 9.6 153 13-178 242-405 (482)
132 3lxx_A GTPase IMAP family memb 99.9 4.4E-23 1.5E-27 153.1 12.4 167 9-180 24-216 (239)
133 3qq5_A Small GTP-binding prote 99.9 3E-25 1E-29 176.1 0.8 159 10-179 30-197 (423)
134 1mky_A Probable GTP-binding pr 99.9 1.7E-23 5.7E-28 168.1 10.3 153 15-179 2-167 (439)
135 1lnz_A SPO0B-associated GTP-bi 99.9 1.2E-23 4.2E-28 162.9 9.1 158 16-181 160-333 (342)
136 2hjg_A GTP-binding protein ENG 99.9 3.6E-24 1.2E-28 171.8 5.7 155 14-179 3-166 (436)
137 1cip_A Protein (guanine nucleo 99.9 4.3E-23 1.5E-27 160.4 9.9 118 61-179 192-345 (353)
138 3sjy_A Translation initiation 99.9 1.8E-22 6.3E-27 160.4 13.7 166 10-179 4-193 (403)
139 1wb1_A Translation elongation 99.9 2.2E-22 7.6E-27 162.9 12.4 158 9-177 14-188 (482)
140 3j2k_7 ERF3, eukaryotic polype 99.9 1E-21 3.6E-26 157.4 15.9 157 9-170 12-217 (439)
141 3geh_A MNME, tRNA modification 99.9 2E-23 6.9E-28 167.6 5.8 155 12-180 222-386 (462)
142 2xtp_A GTPase IMAP family memb 99.9 2.7E-22 9.1E-27 150.7 11.4 165 10-180 18-210 (260)
143 1mky_A Probable GTP-binding pr 99.9 3.6E-22 1.2E-26 160.3 12.8 161 12-180 178-357 (439)
144 3ohm_A Guanine nucleotide-bind 99.9 2.8E-22 9.5E-27 153.8 11.3 120 60-180 165-320 (327)
145 1s0u_A EIF-2-gamma, translatio 99.9 4.9E-21 1.7E-25 152.4 18.0 159 12-178 6-198 (408)
146 3lxw_A GTPase IMAP family memb 99.9 9.9E-22 3.4E-26 146.4 12.6 169 9-180 16-210 (247)
147 3cb4_D GTP-binding protein LEP 99.9 1E-21 3.6E-26 161.8 13.7 159 13-179 3-183 (599)
148 3p26_A Elongation factor 1 alp 99.9 1.3E-22 4.3E-27 164.7 8.1 153 12-168 31-228 (483)
149 4dcu_A GTP-binding protein ENG 99.9 9.5E-23 3.2E-27 164.4 6.9 158 10-178 19-185 (456)
150 2xtz_A Guanine nucleotide-bind 99.9 1.5E-21 5E-26 151.8 12.9 119 60-179 181-346 (354)
151 1kk1_A EIF2gamma; initiation o 99.9 4E-21 1.4E-25 153.0 15.1 161 10-178 6-200 (410)
152 2ywe_A GTP-binding protein LEP 99.9 2.8E-21 9.5E-26 159.0 13.9 160 12-179 4-185 (600)
153 2qtf_A Protein HFLX, GTP-bindi 99.9 1.1E-20 3.9E-25 147.7 16.6 163 14-181 178-357 (364)
154 2elf_A Protein translation elo 99.9 6.9E-22 2.4E-26 154.9 9.7 147 16-179 23-181 (370)
155 3t5d_A Septin-7; GTP-binding p 99.9 6.1E-22 2.1E-26 149.8 8.7 159 12-176 6-202 (274)
156 1zcb_A G alpha I/13; GTP-bindi 99.9 7.3E-22 2.5E-26 154.0 8.8 118 61-179 200-354 (362)
157 1zun_B Sulfate adenylate trans 99.9 3E-21 1E-25 154.8 11.7 155 11-170 21-216 (434)
158 2qag_A Septin-2, protein NEDD5 99.9 3.1E-22 1.1E-26 156.6 5.6 163 12-181 35-236 (361)
159 3izy_P Translation initiation 99.9 2.5E-23 8.7E-28 169.1 -0.6 160 12-178 2-168 (537)
160 1d2e_A Elongation factor TU (E 99.9 2.9E-21 9.8E-26 153.2 11.1 159 13-177 2-194 (397)
161 4fid_A G protein alpha subunit 99.9 3.6E-21 1.2E-25 148.1 11.0 119 59-178 158-328 (340)
162 2c78_A Elongation factor TU-A; 99.9 1.6E-21 5.3E-26 155.2 9.1 161 11-177 8-211 (405)
163 1jny_A EF-1-alpha, elongation 99.8 5.6E-22 1.9E-26 158.9 6.2 157 12-170 4-205 (435)
164 3tr5_A RF-3, peptide chain rel 99.8 1.3E-21 4.6E-26 159.4 8.5 118 12-135 11-149 (528)
165 2ged_A SR-beta, signal recogni 99.8 2E-21 6.7E-26 139.4 7.7 123 11-138 45-174 (193)
166 1g7s_A Translation initiation 99.8 1.7E-20 6E-25 154.7 13.6 158 12-178 3-218 (594)
167 3izq_1 HBS1P, elongation facto 99.8 1.4E-21 4.9E-26 161.9 6.0 156 12-168 165-362 (611)
168 1azs_C GS-alpha; complex (lyas 99.8 3.5E-20 1.2E-24 145.7 12.3 119 61-180 216-387 (402)
169 1r5b_A Eukaryotic peptide chai 99.8 1.6E-21 5.4E-26 157.5 4.3 156 12-169 41-243 (467)
170 1pui_A ENGB, probable GTP-bind 99.8 4.5E-20 1.5E-24 134.1 11.3 162 9-179 21-200 (210)
171 3avx_A Elongation factor TS, e 99.8 2.6E-20 8.9E-25 160.7 10.8 161 11-177 293-485 (1289)
172 1f60_A Elongation factor EEF1A 99.8 2.9E-21 1E-25 155.5 4.3 152 12-168 5-202 (458)
173 1zo1_I IF2, translation initia 99.8 3.1E-22 1.1E-26 161.5 -2.2 153 12-174 2-163 (501)
174 2aka_B Dynamin-1; fusion prote 99.8 1.2E-20 4E-25 144.4 6.7 159 11-174 23-249 (299)
175 3def_A T7I23.11 protein; chlor 99.8 7.1E-20 2.4E-24 137.6 10.7 127 12-139 34-170 (262)
176 2j69_A Bacterial dynamin-like 99.8 7E-19 2.4E-23 148.0 14.5 164 12-180 67-327 (695)
177 1h65_A Chloroplast outer envel 99.8 3.7E-19 1.3E-23 134.3 10.5 127 12-139 37-173 (270)
178 3mca_A HBS1, elongation factor 99.8 3E-21 1E-25 159.6 -1.1 146 12-166 175-371 (592)
179 2h5e_A Peptide chain release f 99.8 1.4E-18 4.7E-23 141.9 13.3 118 12-135 11-149 (529)
180 2dy1_A Elongation factor G; tr 99.8 1.5E-18 5E-23 145.5 13.5 118 10-133 5-139 (665)
181 1udx_A The GTP-binding protein 99.8 1.8E-18 6E-23 137.0 13.2 160 16-181 159-328 (416)
182 1dar_A EF-G, elongation factor 99.8 2E-18 6.7E-23 145.2 12.1 120 9-134 7-143 (691)
183 1jwy_B Dynamin A GTPase domain 99.8 1E-18 3.4E-23 134.7 9.3 166 11-181 21-265 (315)
184 3t34_A Dynamin-related protein 99.8 6.1E-19 2.1E-23 138.3 5.6 155 14-172 34-255 (360)
185 1wxq_A GTP-binding protein; st 99.7 1.5E-18 5.1E-23 137.1 7.4 83 15-98 1-114 (397)
186 2qnr_A Septin-2, protein NEDD5 99.7 1.3E-18 4.3E-23 133.1 6.0 163 11-180 15-216 (301)
187 2rdo_7 EF-G, elongation factor 99.7 8E-17 2.7E-21 135.7 16.5 118 11-134 7-148 (704)
188 2xex_A Elongation factor G; GT 99.7 2.1E-17 7.2E-22 139.0 12.7 119 11-135 7-142 (693)
189 2qag_C Septin-7; cell cycle, c 99.7 5.6E-18 1.9E-22 134.2 8.7 162 10-176 27-225 (418)
190 1u0l_A Probable GTPase ENGC; p 99.7 6.4E-18 2.2E-22 129.2 5.5 132 29-173 32-168 (301)
191 3p32_A Probable GTPase RV1496/ 99.7 1.1E-17 3.7E-22 130.8 5.6 105 61-178 171-284 (355)
192 1jal_A YCHF protein; nucleotid 99.7 1.1E-15 3.7E-20 118.7 14.9 145 14-161 2-240 (363)
193 2x2e_A Dynamin-1; nitration, h 99.7 4.8E-18 1.6E-22 132.8 1.0 158 12-174 29-254 (353)
194 3vqt_A RF-3, peptide chain rel 99.7 7.5E-16 2.6E-20 126.3 12.0 118 12-135 29-167 (548)
195 2hf9_A Probable hydrogenase ni 99.7 2.8E-18 9.7E-23 126.0 -2.5 60 120-179 164-225 (226)
196 2wsm_A Hydrogenase expression/ 99.6 7.3E-17 2.5E-21 118.0 4.7 155 13-180 29-216 (221)
197 2qpt_A EH domain-containing pr 99.6 9.1E-16 3.1E-20 125.9 10.1 123 10-137 61-235 (550)
198 1yrb_A ATP(GTP)binding protein 99.6 2.7E-15 9.1E-20 112.5 11.0 174 4-179 4-258 (262)
199 2dby_A GTP-binding protein; GD 99.6 2.4E-15 8.2E-20 117.4 9.3 154 15-171 2-255 (368)
200 2www_A Methylmalonic aciduria 99.6 5.7E-15 1.9E-19 115.0 11.2 103 61-177 166-278 (349)
201 1n0u_A EF-2, elongation factor 99.6 3E-15 1E-19 128.4 10.1 116 12-133 17-163 (842)
202 2p67_A LAO/AO transport system 99.6 5.1E-16 1.7E-20 120.7 3.3 104 61-177 148-260 (341)
203 4a9a_A Ribosome-interacting GT 99.6 4.6E-14 1.6E-18 110.2 12.5 155 12-170 70-240 (376)
204 3j25_A Tetracycline resistance 99.5 1.3E-15 4.6E-20 127.1 1.7 114 15-134 3-133 (638)
205 4fn5_A EF-G 1, elongation fact 99.5 3.5E-13 1.2E-17 114.0 14.0 117 11-133 10-150 (709)
206 3zvr_A Dynamin-1; hydrolase, D 99.5 1.7E-14 5.8E-19 121.2 5.1 158 12-175 49-275 (772)
207 2yv5_A YJEQ protein; hydrolase 99.4 2.9E-13 9.8E-18 103.4 9.0 96 72-172 66-163 (302)
208 2qm8_A GTPase/ATPase; G protei 99.4 6.1E-14 2.1E-18 108.7 4.0 104 61-177 147-260 (337)
209 3l82_B F-box only protein 4; T 99.4 4.5E-13 1.5E-17 95.2 6.3 109 69-180 109-225 (227)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 2E-11 6.9E-16 95.9 13.3 88 10-97 16-127 (392)
211 2ohf_A Protein OLA1, GTP-bindi 99.3 1.7E-12 5.9E-17 101.8 5.6 91 10-100 18-131 (396)
212 3l2o_B F-box only protein 4; s 99.2 1.7E-11 5.9E-16 91.3 7.0 109 69-180 194-310 (312)
213 3ec1_A YQEH GTPase; atnos1, at 99.0 3.4E-11 1.2E-15 94.4 1.1 142 14-165 162-318 (369)
214 2qag_B Septin-6, protein NEDD5 99.0 6.4E-10 2.2E-14 88.0 6.8 139 14-159 42-217 (427)
215 1tq4_A IIGP1, interferon-induc 99.0 3.6E-09 1.2E-13 83.7 11.0 159 14-183 69-258 (413)
216 3h2y_A GTPase family protein; 99.0 1.3E-09 4.3E-14 85.4 8.2 97 71-176 55-158 (368)
217 2j37_W Signal recognition part 98.9 1.3E-09 4.4E-14 88.3 6.7 151 12-175 99-310 (504)
218 3h2y_A GTPase family protein; 98.9 3.9E-11 1.3E-15 94.0 -2.5 134 15-158 161-310 (368)
219 1puj_A YLQF, conserved hypothe 98.9 4.4E-09 1.5E-13 79.4 6.7 101 66-178 3-106 (282)
220 3ec1_A YQEH GTPase; atnos1, at 98.8 3.3E-09 1.1E-13 83.1 5.6 97 71-176 57-160 (369)
221 3sop_A Neuronal-specific septi 98.8 1.2E-08 4.2E-13 76.5 8.4 136 14-156 2-178 (270)
222 1puj_A YLQF, conserved hypothe 98.8 3.9E-09 1.3E-13 79.7 5.1 59 12-73 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.7 3.3E-09 1.1E-13 79.2 2.7 57 15-74 100-156 (262)
224 3dm5_A SRP54, signal recogniti 98.6 1.3E-07 4.4E-12 75.3 8.1 140 13-166 99-279 (443)
225 1t9h_A YLOQ, probable GTPase E 98.5 7.9E-08 2.7E-12 73.2 3.5 89 77-169 78-168 (307)
226 3cnl_A YLQF, putative uncharac 98.4 8.6E-08 2.9E-12 71.6 2.8 93 69-174 4-97 (262)
227 1f5n_A Interferon-induced guan 98.3 8.4E-07 2.9E-11 73.2 5.9 63 11-73 35-102 (592)
228 2v3c_C SRP54, signal recogniti 98.3 2.3E-07 7.9E-12 74.0 2.3 131 14-157 99-271 (432)
229 3kl4_A SRP54, signal recogniti 98.2 6.4E-07 2.2E-11 71.3 3.9 139 13-165 96-277 (433)
230 1j8m_F SRP54, signal recogniti 98.2 1.3E-06 4.6E-11 66.3 4.5 92 61-167 180-280 (297)
231 3szr_A Interferon-induced GTP- 98.2 2.7E-06 9.3E-11 70.9 6.7 22 17-38 48-69 (608)
232 2rcn_A Probable GTPase ENGC; Y 98.1 1E-05 3.4E-10 62.8 8.2 86 81-171 126-212 (358)
233 3e70_C DPA, signal recognition 98.1 3.9E-06 1.3E-10 64.6 5.5 143 12-168 127-310 (328)
234 1bif_A 6-phosphofructo-2-kinas 98.0 3.4E-07 1.2E-11 74.0 -2.9 102 12-115 37-148 (469)
235 3q5d_A Atlastin-1; G protein, 97.9 1.1E-05 3.9E-10 64.3 4.9 27 11-37 64-90 (447)
236 2xxa_A Signal recognition part 97.6 0.00031 1.1E-08 56.1 9.5 24 12-35 98-121 (433)
237 1ye8_A Protein THEP1, hypothet 97.6 4.4E-05 1.5E-09 53.5 3.3 23 16-38 2-24 (178)
238 1kgd_A CASK, peripheral plasma 97.5 6.3E-05 2.1E-09 52.7 3.1 22 16-37 7-28 (180)
239 3ney_A 55 kDa erythrocyte memb 97.5 7.2E-05 2.5E-09 53.1 3.4 31 7-37 12-42 (197)
240 1lvg_A Guanylate kinase, GMP k 97.4 7.7E-05 2.6E-09 53.1 3.1 22 16-37 6-27 (198)
241 3tr0_A Guanylate kinase, GMP k 97.4 0.0001 3.5E-09 52.4 3.1 22 16-37 9-30 (205)
242 3a00_A Guanylate kinase, GMP k 97.4 0.0001 3.5E-09 51.8 3.0 21 17-37 4-24 (186)
243 1zp6_A Hypothetical protein AT 97.3 0.00011 3.8E-09 51.7 3.0 23 15-37 10-32 (191)
244 1t9h_A YLOQ, probable GTPase E 97.3 7.9E-05 2.7E-09 56.7 2.3 24 15-38 174-197 (307)
245 2yv5_A YJEQ protein; hydrolase 97.3 0.00048 1.6E-08 52.4 6.3 22 16-38 167-188 (302)
246 2cdn_A Adenylate kinase; phosp 97.3 0.00016 5.6E-09 51.4 3.5 30 7-36 13-42 (201)
247 1s96_A Guanylate kinase, GMP k 97.3 0.00014 4.8E-09 52.6 3.1 23 16-38 18-40 (219)
248 1znw_A Guanylate kinase, GMP k 97.3 0.00014 4.7E-09 52.1 3.0 27 12-38 18-44 (207)
249 4gp7_A Metallophosphoesterase; 97.3 0.00012 4.2E-09 50.8 2.5 20 16-35 11-30 (171)
250 3c8u_A Fructokinase; YP_612366 97.3 0.00014 4.7E-09 52.1 2.8 26 12-37 20-45 (208)
251 3tau_A Guanylate kinase, GMP k 97.2 0.00017 6E-09 51.6 3.2 24 15-38 9-32 (208)
252 1ex7_A Guanylate kinase; subst 97.2 0.00017 5.9E-09 50.7 3.0 21 17-37 4-24 (186)
253 1z6g_A Guanylate kinase; struc 97.2 0.00014 4.9E-09 52.5 2.6 28 11-38 20-47 (218)
254 1ly1_A Polynucleotide kinase; 97.2 0.00024 8.3E-09 49.3 3.5 22 15-36 3-24 (181)
255 1htw_A HI0065; nucleotide-bind 97.2 0.00022 7.5E-09 48.8 3.0 23 16-38 35-57 (158)
256 1kag_A SKI, shikimate kinase I 97.2 0.00024 8.1E-09 49.1 3.1 23 15-37 5-27 (173)
257 2qor_A Guanylate kinase; phosp 97.2 0.00024 8.1E-09 50.7 3.1 23 15-37 13-35 (204)
258 3tif_A Uncharacterized ABC tra 97.2 0.00022 7.4E-09 52.2 2.9 23 16-38 33-55 (235)
259 3cwq_A Para family chromosome 97.1 0.0026 9E-08 45.5 8.5 86 61-155 67-153 (209)
260 2j41_A Guanylate kinase; GMP, 97.1 0.00025 8.4E-09 50.5 3.0 24 15-38 7-30 (207)
261 2bdt_A BH3686; alpha-beta prot 97.1 0.00025 8.6E-09 49.8 3.0 21 16-36 4-24 (189)
262 3kb2_A SPBC2 prophage-derived 97.1 0.0003 1E-08 48.5 3.2 22 16-37 3-24 (173)
263 2bbw_A Adenylate kinase 4, AK4 97.1 0.00029 1E-08 51.8 3.3 22 14-35 27-48 (246)
264 4eun_A Thermoresistant glucoki 97.1 0.00028 9.7E-09 50.1 3.1 24 14-37 29-52 (200)
265 3lw7_A Adenylate kinase relate 97.1 0.00027 9.3E-09 48.7 2.9 20 15-34 2-21 (179)
266 1y63_A LMAJ004144AAA protein; 97.1 0.00033 1.1E-08 49.1 3.4 29 9-37 5-33 (184)
267 2pcj_A ABC transporter, lipopr 97.1 0.00027 9.2E-09 51.3 2.8 22 16-37 32-53 (224)
268 2rcn_A Probable GTPase ENGC; Y 97.1 0.0003 1E-08 54.6 3.2 24 16-39 217-240 (358)
269 3asz_A Uridine kinase; cytidin 97.1 0.00035 1.2E-08 50.0 3.4 24 14-37 6-29 (211)
270 2jeo_A Uridine-cytidine kinase 97.1 0.00037 1.2E-08 51.2 3.5 29 8-36 19-47 (245)
271 2i3b_A HCR-ntpase, human cance 97.1 0.00029 9.9E-09 49.8 2.7 22 16-37 3-24 (189)
272 2onk_A Molybdate/tungstate ABC 97.1 0.00036 1.2E-08 51.2 3.3 23 16-38 26-48 (240)
273 3ec2_A DNA replication protein 97.0 0.00032 1.1E-08 48.9 2.8 24 14-37 38-61 (180)
274 2cbz_A Multidrug resistance-as 97.0 0.00036 1.2E-08 51.1 3.1 22 16-37 33-54 (237)
275 1b0u_A Histidine permease; ABC 97.0 0.00034 1.2E-08 52.1 2.9 23 16-38 34-56 (262)
276 1sgw_A Putative ABC transporte 97.0 0.00035 1.2E-08 50.3 2.9 22 16-37 37-58 (214)
277 3gfo_A Cobalt import ATP-bindi 97.0 0.00034 1.2E-08 52.4 2.9 23 16-38 36-58 (275)
278 1knq_A Gluconate kinase; ALFA/ 97.0 0.00051 1.7E-08 47.5 3.7 22 15-36 9-30 (175)
279 1mv5_A LMRA, multidrug resista 97.0 0.00041 1.4E-08 51.0 3.2 23 16-38 30-52 (243)
280 3sr0_A Adenylate kinase; phosp 97.0 0.00044 1.5E-08 49.5 3.2 21 16-36 2-22 (206)
281 3vaa_A Shikimate kinase, SK; s 97.0 0.00046 1.6E-08 49.0 3.3 22 15-36 26-47 (199)
282 2ff7_A Alpha-hemolysin translo 97.0 0.00041 1.4E-08 51.1 3.1 23 16-38 37-59 (247)
283 2pze_A Cystic fibrosis transme 97.0 0.00042 1.4E-08 50.4 3.2 23 16-38 36-58 (229)
284 3fb4_A Adenylate kinase; psych 97.0 0.00044 1.5E-08 49.6 3.2 21 16-36 2-22 (216)
285 2v9p_A Replication protein E1; 97.0 0.00042 1.4E-08 52.6 3.2 23 15-37 127-149 (305)
286 4g1u_C Hemin import ATP-bindin 97.0 0.00041 1.4E-08 51.7 3.1 23 16-38 39-61 (266)
287 1ukz_A Uridylate kinase; trans 97.0 0.00061 2.1E-08 48.4 3.9 26 11-36 12-37 (203)
288 3t61_A Gluconokinase; PSI-biol 97.0 0.00042 1.4E-08 49.3 3.0 24 14-37 18-41 (202)
289 2if2_A Dephospho-COA kinase; a 97.0 0.00045 1.6E-08 49.1 3.2 21 16-36 3-23 (204)
290 1jjv_A Dephospho-COA kinase; P 97.0 0.00051 1.8E-08 48.9 3.5 22 15-36 3-24 (206)
291 1np6_A Molybdopterin-guanine d 97.0 0.00045 1.6E-08 48.0 3.1 23 15-37 7-29 (174)
292 2qt1_A Nicotinamide riboside k 97.0 0.00069 2.4E-08 48.3 4.2 29 9-37 16-44 (207)
293 3dl0_A Adenylate kinase; phosp 97.0 0.00046 1.6E-08 49.5 3.2 21 16-36 2-22 (216)
294 1g6h_A High-affinity branched- 97.0 0.00044 1.5E-08 51.3 3.1 23 16-38 35-57 (257)
295 2olj_A Amino acid ABC transpor 97.0 0.00045 1.6E-08 51.4 3.2 22 16-37 52-73 (263)
296 1cke_A CK, MSSA, protein (cyti 97.0 0.00049 1.7E-08 49.7 3.3 22 15-36 6-27 (227)
297 1nks_A Adenylate kinase; therm 97.0 0.00048 1.6E-08 48.3 3.2 21 16-36 3-23 (194)
298 3b85_A Phosphate starvation-in 97.0 0.00036 1.2E-08 50.1 2.5 22 16-37 24-45 (208)
299 3tlx_A Adenylate kinase 2; str 97.0 0.00056 1.9E-08 50.2 3.6 24 13-36 28-51 (243)
300 3aez_A Pantothenate kinase; tr 97.0 0.00061 2.1E-08 52.0 3.9 27 11-37 87-113 (312)
301 2qi9_C Vitamin B12 import ATP- 97.0 0.00048 1.6E-08 50.8 3.2 22 16-37 28-49 (249)
302 2eyu_A Twitching motility prot 96.9 0.00049 1.7E-08 51.1 3.2 22 16-37 27-48 (261)
303 1ji0_A ABC transporter; ATP bi 96.9 0.00048 1.6E-08 50.5 3.1 23 16-38 34-56 (240)
304 2jaq_A Deoxyguanosine kinase; 96.9 0.00054 1.8E-08 48.5 3.3 21 16-36 2-22 (205)
305 2ghi_A Transport protein; mult 96.9 0.00048 1.6E-08 51.2 3.1 22 16-37 48-69 (260)
306 1qhx_A CPT, protein (chloramph 96.9 0.00049 1.7E-08 47.7 3.0 23 15-37 4-26 (178)
307 1vpl_A ABC transporter, ATP-bi 96.9 0.0005 1.7E-08 51.0 3.2 23 16-38 43-65 (256)
308 2rhm_A Putative kinase; P-loop 96.9 0.00058 2E-08 47.9 3.4 23 14-36 5-27 (193)
309 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00052 1.8E-08 50.7 3.3 22 16-37 31-52 (250)
310 3uie_A Adenylyl-sulfate kinase 96.9 0.0005 1.7E-08 48.8 3.0 25 13-37 24-48 (200)
311 3tqc_A Pantothenate kinase; bi 96.9 0.00079 2.7E-08 51.5 4.3 26 11-36 89-114 (321)
312 2ehv_A Hypothetical protein PH 96.9 0.00049 1.7E-08 50.4 3.0 20 16-35 32-51 (251)
313 2zu0_C Probable ATP-dependent 96.9 0.00056 1.9E-08 51.0 3.3 22 16-37 48-69 (267)
314 2ihy_A ABC transporter, ATP-bi 96.9 0.00052 1.8E-08 51.5 3.2 23 16-38 49-71 (279)
315 2ixe_A Antigen peptide transpo 96.9 0.00053 1.8E-08 51.3 3.1 23 16-38 47-69 (271)
316 3cm0_A Adenylate kinase; ATP-b 96.9 0.00072 2.4E-08 47.2 3.7 23 14-36 4-26 (186)
317 1tev_A UMP-CMP kinase; ploop, 96.9 0.00065 2.2E-08 47.7 3.5 23 14-36 3-25 (196)
318 2f1r_A Molybdopterin-guanine d 96.9 0.00033 1.1E-08 48.6 1.9 22 16-37 4-25 (171)
319 1kht_A Adenylate kinase; phosp 96.9 0.00062 2.1E-08 47.7 3.3 22 15-36 4-25 (192)
320 4a74_A DNA repair and recombin 96.9 0.00052 1.8E-08 49.6 2.9 22 16-37 27-48 (231)
321 2nq2_C Hypothetical ABC transp 96.9 0.00057 1.9E-08 50.5 3.1 23 16-38 33-55 (253)
322 3lnc_A Guanylate kinase, GMP k 96.9 0.00035 1.2E-08 50.8 1.9 26 12-37 25-51 (231)
323 1uj2_A Uridine-cytidine kinase 96.9 0.00069 2.4E-08 50.0 3.4 28 9-36 17-44 (252)
324 2yz2_A Putative ABC transporte 96.9 0.0006 2.1E-08 50.8 3.1 23 16-38 35-57 (266)
325 1u0l_A Probable GTPase ENGC; p 96.9 0.00057 2E-08 51.9 3.0 24 16-39 171-194 (301)
326 3trf_A Shikimate kinase, SK; a 96.9 0.0007 2.4E-08 47.3 3.2 22 15-36 6-27 (185)
327 2pjz_A Hypothetical protein ST 96.9 0.00065 2.2E-08 50.5 3.2 23 16-38 32-54 (263)
328 4ido_A Atlastin-1; GTPase, GTP 96.8 0.0019 6.5E-08 51.5 5.9 62 12-73 65-151 (457)
329 1lw7_A Transcriptional regulat 96.8 0.00063 2.2E-08 53.1 3.2 25 14-38 170-194 (365)
330 1e4v_A Adenylate kinase; trans 96.8 0.00068 2.3E-08 48.6 3.1 21 16-36 2-22 (214)
331 2plr_A DTMP kinase, probable t 96.8 0.0008 2.7E-08 47.9 3.5 23 14-36 4-26 (213)
332 3iij_A Coilin-interacting nucl 96.8 0.00068 2.3E-08 47.2 3.0 24 13-36 10-33 (180)
333 2wwf_A Thymidilate kinase, put 96.8 0.001 3.5E-08 47.5 3.8 23 14-36 10-32 (212)
334 1gvn_B Zeta; postsegregational 96.8 0.00083 2.8E-08 50.6 3.4 26 11-36 30-55 (287)
335 3nh6_A ATP-binding cassette SU 96.8 0.00056 1.9E-08 52.0 2.5 22 16-37 82-103 (306)
336 1zd8_A GTP:AMP phosphotransfer 96.8 0.00076 2.6E-08 48.9 3.1 23 14-36 7-29 (227)
337 1via_A Shikimate kinase; struc 96.8 0.00069 2.4E-08 46.9 2.7 21 16-36 6-26 (175)
338 1ak2_A Adenylate kinase isoenz 96.8 0.00085 2.9E-08 48.8 3.3 25 12-36 14-38 (233)
339 1odf_A YGR205W, hypothetical 3 96.8 0.0011 3.7E-08 50.1 3.9 26 11-36 28-53 (290)
340 2x8a_A Nuclear valosin-contain 96.8 0.00077 2.6E-08 50.4 3.0 22 16-37 46-67 (274)
341 1aky_A Adenylate kinase; ATP:A 96.8 0.00086 3E-08 48.3 3.2 22 15-36 5-26 (220)
342 1qf9_A UMP/CMP kinase, protein 96.8 0.0011 3.8E-08 46.4 3.7 23 14-36 6-28 (194)
343 2kjq_A DNAA-related protein; s 96.8 0.00054 1.9E-08 46.4 1.9 22 16-37 38-59 (149)
344 1rz3_A Hypothetical protein rb 96.7 0.0012 4.2E-08 46.8 3.9 25 12-36 20-44 (201)
345 2pt5_A Shikimate kinase, SK; a 96.7 0.001 3.5E-08 45.6 3.3 21 16-36 2-22 (168)
346 2bbs_A Cystic fibrosis transme 96.7 0.00084 2.9E-08 50.7 3.0 22 16-37 66-87 (290)
347 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00083 2.8E-08 52.2 2.9 23 16-38 32-54 (359)
348 2yvu_A Probable adenylyl-sulfa 96.7 0.0015 5.1E-08 45.7 4.0 26 12-37 11-36 (186)
349 1uf9_A TT1252 protein; P-loop, 96.7 0.0012 4.2E-08 46.6 3.7 25 13-37 7-31 (203)
350 2p5t_B PEZT; postsegregational 96.7 0.00092 3.1E-08 49.4 3.1 27 10-36 28-54 (253)
351 1zak_A Adenylate kinase; ATP:A 96.7 0.00074 2.5E-08 48.7 2.5 23 14-36 5-27 (222)
352 1xjc_A MOBB protein homolog; s 96.7 0.001 3.5E-08 45.9 3.1 23 15-37 5-27 (169)
353 2v54_A DTMP kinase, thymidylat 96.7 0.0012 3.9E-08 46.8 3.4 23 15-37 5-27 (204)
354 1sq5_A Pantothenate kinase; P- 96.7 0.0013 4.3E-08 50.1 3.8 26 12-37 78-103 (308)
355 1gtv_A TMK, thymidylate kinase 96.7 0.00044 1.5E-08 49.4 1.2 22 16-37 2-23 (214)
356 1ixz_A ATP-dependent metallopr 96.7 0.00099 3.4E-08 49.1 3.1 22 16-37 51-72 (254)
357 3jvv_A Twitching mobility prot 96.7 0.001 3.5E-08 51.7 3.3 22 16-37 125-146 (356)
358 2c95_A Adenylate kinase 1; tra 96.7 0.00098 3.4E-08 46.9 2.9 23 14-36 9-31 (196)
359 2xb4_A Adenylate kinase; ATP-b 96.7 0.0011 3.9E-08 47.8 3.3 21 16-36 2-22 (223)
360 1z47_A CYSA, putative ABC-tran 96.7 0.00098 3.4E-08 51.7 3.0 23 16-38 43-65 (355)
361 3tui_C Methionine import ATP-b 96.7 0.001 3.5E-08 51.8 3.1 23 16-38 56-78 (366)
362 1rj9_A FTSY, signal recognitio 96.7 0.001 3.4E-08 50.6 3.0 22 14-35 102-123 (304)
363 2ze6_A Isopentenyl transferase 96.7 0.0011 3.6E-08 49.1 3.1 21 16-36 3-23 (253)
364 2z0h_A DTMP kinase, thymidylat 96.6 0.0011 3.8E-08 46.6 3.0 22 16-37 2-23 (197)
365 2yyz_A Sugar ABC transporter, 96.6 0.001 3.5E-08 51.7 3.0 23 16-38 31-53 (359)
366 1nn5_A Similar to deoxythymidy 96.6 0.0012 4E-08 47.2 3.2 23 14-36 9-31 (215)
367 3umf_A Adenylate kinase; rossm 96.6 0.0017 5.7E-08 46.9 3.9 21 16-36 31-51 (217)
368 2bwj_A Adenylate kinase 5; pho 96.6 0.0012 4.1E-08 46.5 3.2 23 14-36 12-34 (199)
369 2it1_A 362AA long hypothetical 96.6 0.0011 3.7E-08 51.6 3.1 23 16-38 31-53 (362)
370 1jbk_A CLPB protein; beta barr 96.6 0.0013 4.6E-08 45.6 3.3 23 15-37 44-66 (195)
371 2pbr_A DTMP kinase, thymidylat 96.6 0.0013 4.5E-08 46.1 3.3 21 16-36 2-22 (195)
372 4e22_A Cytidylate kinase; P-lo 96.6 0.0013 4.3E-08 48.6 3.3 22 14-35 27-48 (252)
373 3rlf_A Maltose/maltodextrin im 96.6 0.0011 3.8E-08 51.8 3.1 23 16-38 31-53 (381)
374 1vht_A Dephospho-COA kinase; s 96.6 0.0016 5.3E-08 46.8 3.6 23 14-36 4-26 (218)
375 3be4_A Adenylate kinase; malar 96.6 0.0012 4.1E-08 47.5 3.0 22 15-36 6-27 (217)
376 3b9q_A Chloroplast SRP recepto 96.6 0.0019 6.5E-08 49.0 4.1 27 10-36 96-122 (302)
377 1v43_A Sugar-binding transport 96.6 0.0012 4.1E-08 51.6 3.1 23 16-38 39-61 (372)
378 1g29_1 MALK, maltose transport 96.6 0.0012 4E-08 51.6 3.0 23 16-38 31-53 (372)
379 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.0012 4.1E-08 50.8 2.9 23 16-38 173-195 (330)
380 2ewv_A Twitching motility prot 96.6 0.0013 4.5E-08 51.4 3.2 22 16-37 138-159 (372)
381 3d31_A Sulfate/molybdate ABC t 96.6 0.001 3.4E-08 51.6 2.5 23 16-38 28-50 (348)
382 1e6c_A Shikimate kinase; phosp 96.6 0.0014 4.8E-08 45.1 3.0 21 16-36 4-24 (173)
383 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0014 4.7E-08 47.3 3.0 22 16-37 25-46 (235)
384 1in4_A RUVB, holliday junction 96.5 0.0013 4.5E-08 50.6 3.0 22 16-37 53-74 (334)
385 3a4m_A L-seryl-tRNA(SEC) kinas 96.5 0.0014 4.8E-08 48.6 3.0 22 15-36 5-26 (260)
386 2gza_A Type IV secretion syste 96.5 0.0013 4.3E-08 51.3 2.9 22 16-37 177-198 (361)
387 2iyv_A Shikimate kinase, SK; t 96.5 0.0015 5E-08 45.6 3.0 21 16-36 4-24 (184)
388 3r20_A Cytidylate kinase; stru 96.5 0.0016 5.4E-08 47.5 3.2 25 12-36 7-31 (233)
389 1iy2_A ATP-dependent metallopr 96.5 0.0015 5.2E-08 48.8 3.1 22 16-37 75-96 (278)
390 2vp4_A Deoxynucleoside kinase; 96.5 0.002 6.7E-08 46.8 3.5 26 12-37 18-43 (230)
391 2pez_A Bifunctional 3'-phospho 96.5 0.0019 6.4E-08 44.8 3.3 22 15-36 6-27 (179)
392 1zuh_A Shikimate kinase; alpha 96.5 0.0019 6.5E-08 44.3 3.3 21 16-36 9-29 (168)
393 1p9r_A General secretion pathw 96.5 0.0015 5.2E-08 51.8 3.0 22 16-37 169-190 (418)
394 2vli_A Antibiotic resistance p 96.5 0.0013 4.4E-08 45.7 2.3 22 15-36 6-27 (183)
395 1oxx_K GLCV, glucose, ABC tran 96.4 0.00098 3.4E-08 51.7 1.7 23 16-38 33-55 (353)
396 1cr0_A DNA primase/helicase; R 96.4 0.0017 5.7E-08 49.0 2.9 22 16-37 37-58 (296)
397 3gd7_A Fusion complex of cysti 96.4 0.0017 5.7E-08 51.1 2.9 22 16-37 49-70 (390)
398 3co5_A Putative two-component 96.4 0.005 1.7E-07 41.1 4.9 23 15-37 28-50 (143)
399 2p65_A Hypothetical protein PF 96.4 0.0016 5.6E-08 45.0 2.6 24 14-37 43-66 (187)
400 2oap_1 GSPE-2, type II secreti 96.4 0.0017 5.9E-08 52.9 3.0 23 16-38 262-284 (511)
401 2og2_A Putative signal recogni 96.4 0.0032 1.1E-07 48.9 4.3 27 10-36 153-179 (359)
402 1lv7_A FTSH; alpha/beta domain 96.4 0.0021 7E-08 47.4 3.1 24 14-37 45-68 (257)
403 2f6r_A COA synthase, bifunctio 96.4 0.0022 7.7E-08 48.1 3.3 25 12-36 73-97 (281)
404 2cvh_A DNA repair and recombin 96.4 0.0021 7.1E-08 46.0 3.0 21 16-36 22-42 (220)
405 2obl_A ESCN; ATPase, hydrolase 96.4 0.0021 7.3E-08 49.7 3.2 23 16-38 73-95 (347)
406 1ltq_A Polynucleotide kinase; 96.4 0.0024 8.4E-08 48.2 3.5 22 15-36 3-24 (301)
407 3bos_A Putative DNA replicatio 96.3 0.0023 8E-08 46.3 3.3 24 14-37 52-75 (242)
408 2w58_A DNAI, primosome compone 96.3 0.0025 8.4E-08 45.1 3.3 23 15-37 55-77 (202)
409 1n0w_A DNA repair protein RAD5 96.3 0.0022 7.5E-08 46.6 3.1 22 16-37 26-47 (243)
410 1tue_A Replication protein E1; 96.3 0.0019 6.5E-08 46.0 2.6 23 15-37 59-81 (212)
411 4eaq_A DTMP kinase, thymidylat 96.3 0.0032 1.1E-07 45.7 3.9 25 13-37 25-49 (229)
412 1m7g_A Adenylylsulfate kinase; 96.3 0.0022 7.6E-08 45.8 3.0 23 14-36 25-47 (211)
413 2npi_A Protein CLP1; CLP1-PCF1 96.3 0.0017 5.9E-08 52.2 2.6 23 16-38 140-162 (460)
414 2yhs_A FTSY, cell division pro 96.3 0.0029 9.8E-08 51.1 3.8 28 9-36 288-315 (503)
415 3nwj_A ATSK2; P loop, shikimat 96.3 0.0021 7E-08 47.4 2.7 22 15-36 49-70 (250)
416 2grj_A Dephospho-COA kinase; T 96.3 0.0033 1.1E-07 44.4 3.6 25 13-37 11-35 (192)
417 3kta_A Chromosome segregation 96.3 0.0025 8.7E-08 44.3 2.9 21 16-36 28-48 (182)
418 1p5z_B DCK, deoxycytidine kina 96.3 0.0018 6.3E-08 47.9 2.3 26 12-37 22-47 (263)
419 1nij_A Hypothetical protein YJ 96.2 0.0017 5.9E-08 49.6 2.1 23 16-38 6-28 (318)
420 3t15_A Ribulose bisphosphate c 96.2 0.0032 1.1E-07 47.5 3.5 26 12-37 34-59 (293)
421 3uc9_A Increased recombination 96.2 0.0049 1.7E-07 44.5 4.2 23 16-38 29-53 (233)
422 1svm_A Large T antigen; AAA+ f 96.2 0.0028 9.6E-08 49.6 3.0 24 13-36 168-191 (377)
423 3gmt_A Adenylate kinase; ssgci 96.2 0.0035 1.2E-07 45.5 3.3 23 14-36 8-30 (230)
424 1q3t_A Cytidylate kinase; nucl 96.1 0.0036 1.2E-07 45.6 3.3 27 10-36 12-38 (236)
425 1vma_A Cell division protein F 96.1 0.0072 2.5E-07 45.9 5.0 25 12-36 102-126 (306)
426 3n70_A Transport activator; si 96.1 0.0036 1.2E-07 41.9 2.9 25 14-38 24-48 (145)
427 2dpy_A FLII, flagellum-specifi 96.1 0.0036 1.2E-07 50.1 3.2 23 16-38 159-181 (438)
428 3zvl_A Bifunctional polynucleo 96.1 0.0051 1.7E-07 48.8 4.1 26 12-37 256-281 (416)
429 3h4m_A Proteasome-activating n 96.1 0.0038 1.3E-07 46.6 3.2 25 13-37 50-74 (285)
430 1f2t_A RAD50 ABC-ATPase; DNA d 96.1 0.0036 1.2E-07 42.2 2.8 19 17-35 26-44 (149)
431 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0037 1.3E-07 46.0 3.1 25 13-37 38-62 (262)
432 3b9p_A CG5977-PA, isoform A; A 96.1 0.0039 1.3E-07 46.9 3.2 24 14-37 54-77 (297)
433 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0037 1.3E-07 51.3 3.3 23 16-38 49-71 (538)
434 1njg_A DNA polymerase III subu 96.1 0.0037 1.3E-07 45.0 3.0 22 16-37 47-68 (250)
435 3euj_A Chromosome partition pr 96.0 0.0035 1.2E-07 50.6 3.1 22 15-36 30-51 (483)
436 1nlf_A Regulatory protein REPA 96.0 0.0035 1.2E-07 46.8 2.9 21 16-36 32-52 (279)
437 2chg_A Replication factor C sm 96.0 0.0038 1.3E-07 44.4 3.0 21 17-37 41-61 (226)
438 3ake_A Cytidylate kinase; CMP 96.0 0.0046 1.6E-07 43.8 3.3 21 16-36 4-24 (208)
439 3cf0_A Transitional endoplasmi 96.0 0.0039 1.3E-07 47.2 3.0 24 14-37 49-72 (301)
440 3ozx_A RNAse L inhibitor; ATP 96.0 0.0037 1.3E-07 51.3 2.9 23 16-38 27-49 (538)
441 3b60_A Lipid A export ATP-bind 96.0 0.004 1.4E-07 51.7 3.1 22 16-37 371-392 (582)
442 1l8q_A Chromosomal replication 95.9 0.0042 1.4E-07 47.4 3.0 23 15-37 38-60 (324)
443 2px0_A Flagellar biosynthesis 95.9 0.0048 1.6E-07 46.7 3.2 133 14-158 105-273 (296)
444 3j16_B RLI1P; ribosome recycli 95.9 0.0043 1.5E-07 51.7 3.1 23 16-38 105-127 (608)
445 2dr3_A UPF0273 protein PH0284; 95.9 0.0048 1.6E-07 44.9 2.9 21 16-36 25-45 (247)
446 3syl_A Protein CBBX; photosynt 95.9 0.0062 2.1E-07 46.0 3.6 24 13-36 66-89 (309)
447 3b5x_A Lipid A export ATP-bind 95.9 0.0046 1.6E-07 51.3 3.1 23 16-38 371-393 (582)
448 1d2n_A N-ethylmaleimide-sensit 95.8 0.0074 2.5E-07 44.8 3.9 26 12-37 62-87 (272)
449 3bk7_A ABC transporter ATP-bin 95.8 0.0051 1.8E-07 51.2 3.2 23 16-38 119-141 (607)
450 1yqt_A RNAse L inhibitor; ATP- 95.8 0.0056 1.9E-07 50.3 3.3 23 16-38 314-336 (538)
451 2qmh_A HPR kinase/phosphorylas 95.8 0.0052 1.8E-07 43.5 2.7 24 15-38 35-58 (205)
452 3bk7_A ABC transporter ATP-bin 95.8 0.0058 2E-07 50.9 3.3 23 16-38 384-406 (607)
453 1pzn_A RAD51, DNA repair and r 95.8 0.0053 1.8E-07 47.6 2.9 23 15-37 132-154 (349)
454 3ozx_A RNAse L inhibitor; ATP 95.7 0.0057 2E-07 50.2 3.2 23 16-38 296-318 (538)
455 1c9k_A COBU, adenosylcobinamid 95.7 0.0063 2.2E-07 42.4 2.9 21 17-37 2-22 (180)
456 2qby_A CDC6 homolog 1, cell di 95.7 0.0056 1.9E-07 47.5 3.0 24 14-37 45-68 (386)
457 4b4t_K 26S protease regulatory 95.7 0.0059 2E-07 48.6 3.0 25 13-37 205-229 (428)
458 1ofh_A ATP-dependent HSL prote 95.7 0.0061 2.1E-07 45.9 3.1 24 14-37 50-73 (310)
459 1sxj_E Activator 1 40 kDa subu 95.7 0.0049 1.7E-07 47.5 2.5 20 17-36 39-58 (354)
460 1sxj_C Activator 1 40 kDa subu 95.7 0.006 2.1E-07 46.9 3.0 21 17-37 49-69 (340)
461 2yl4_A ATP-binding cassette SU 95.7 0.0042 1.4E-07 51.7 2.1 22 16-37 372-393 (595)
462 4b4t_M 26S protease regulatory 95.7 0.007 2.4E-07 48.2 3.3 26 12-37 213-238 (434)
463 3d3q_A TRNA delta(2)-isopenten 95.7 0.0064 2.2E-07 46.8 3.0 22 15-36 8-29 (340)
464 1xwi_A SKD1 protein; VPS4B, AA 95.7 0.0063 2.2E-07 46.6 3.0 24 14-37 45-68 (322)
465 3qf7_A RAD50; ABC-ATPase, ATPa 95.7 0.0064 2.2E-07 47.4 3.0 22 13-35 23-44 (365)
466 3qf4_B Uncharacterized ABC tra 95.7 0.0046 1.6E-07 51.5 2.3 23 16-38 383-405 (598)
467 3crm_A TRNA delta(2)-isopenten 95.7 0.0086 2.9E-07 45.8 3.6 23 15-37 6-28 (323)
468 1fnn_A CDC6P, cell division co 95.7 0.0072 2.5E-07 47.1 3.3 22 16-37 46-67 (389)
469 4a82_A Cystic fibrosis transme 95.7 0.0039 1.3E-07 51.7 1.9 22 16-37 369-390 (578)
470 3eie_A Vacuolar protein sortin 95.6 0.0073 2.5E-07 46.1 3.2 24 14-37 51-74 (322)
471 4fcw_A Chaperone protein CLPB; 95.6 0.0077 2.6E-07 45.5 3.3 23 15-37 48-70 (311)
472 2qgz_A Helicase loader, putati 95.6 0.0079 2.7E-07 45.7 3.3 24 14-37 152-175 (308)
473 2ocp_A DGK, deoxyguanosine kin 95.6 0.0086 3E-07 43.6 3.4 23 15-37 3-25 (241)
474 4b4t_L 26S protease subunit RP 95.6 0.0072 2.5E-07 48.2 3.1 26 12-37 213-238 (437)
475 3j16_B RLI1P; ribosome recycli 95.6 0.0077 2.6E-07 50.1 3.3 23 17-39 381-403 (608)
476 3qf4_A ABC transporter, ATP-bi 95.6 0.0053 1.8E-07 51.0 2.3 22 16-37 371-392 (587)
477 2ga8_A Hypothetical 39.9 kDa p 95.5 0.0098 3.4E-07 46.0 3.5 22 14-35 24-45 (359)
478 3te6_A Regulatory protein SIR3 95.5 0.007 2.4E-07 46.2 2.7 25 13-37 44-68 (318)
479 2h92_A Cytidylate kinase; ross 95.5 0.0075 2.6E-07 43.2 2.7 23 14-36 3-25 (219)
480 1a7j_A Phosphoribulokinase; tr 95.5 0.0036 1.2E-07 47.2 1.0 23 14-36 5-27 (290)
481 4edh_A DTMP kinase, thymidylat 95.5 0.009 3.1E-07 42.9 3.0 23 14-36 6-28 (213)
482 4b4t_J 26S protease regulatory 95.5 0.0083 2.9E-07 47.2 3.0 25 13-37 181-205 (405)
483 1sxj_D Activator 1 41 kDa subu 95.4 0.0084 2.9E-07 46.1 3.0 21 17-37 61-81 (353)
484 3exa_A TRNA delta(2)-isopenten 95.4 0.012 4E-07 44.8 3.6 23 15-37 4-26 (322)
485 2r62_A Cell division protease 95.4 0.0037 1.3E-07 46.3 0.9 22 16-37 46-67 (268)
486 2v1u_A Cell division control p 95.4 0.0075 2.6E-07 46.9 2.7 25 13-37 43-67 (387)
487 3cr8_A Sulfate adenylyltranfer 95.4 0.0069 2.4E-07 49.8 2.5 25 13-37 368-392 (552)
488 2axn_A 6-phosphofructo-2-kinas 95.4 0.015 5.3E-07 47.5 4.5 24 12-35 33-56 (520)
489 1qhl_A Protein (cell division 95.4 0.0015 5.1E-08 47.4 -1.3 23 17-39 30-52 (227)
490 3uk6_A RUVB-like 2; hexameric 95.4 0.0096 3.3E-07 46.1 3.2 23 15-37 71-93 (368)
491 3foz_A TRNA delta(2)-isopenten 95.4 0.013 4.6E-07 44.4 3.7 24 14-37 10-33 (316)
492 2z4s_A Chromosomal replication 95.3 0.0092 3.2E-07 47.7 3.0 23 15-37 131-153 (440)
493 2qp9_X Vacuolar protein sortin 95.3 0.01 3.4E-07 46.1 3.0 23 15-37 85-107 (355)
494 3a8t_A Adenylate isopentenyltr 95.3 0.014 4.7E-07 44.9 3.7 23 15-37 41-63 (339)
495 2iw3_A Elongation factor 3A; a 95.3 0.012 4E-07 51.6 3.6 24 16-39 463-486 (986)
496 3lda_A DNA repair protein RAD5 95.3 0.0096 3.3E-07 47.0 2.9 21 16-36 180-200 (400)
497 2iw3_A Elongation factor 3A; a 95.3 0.0067 2.3E-07 53.1 2.2 23 16-38 701-723 (986)
498 3tqf_A HPR(Ser) kinase; transf 95.3 0.013 4.6E-07 40.4 3.2 24 15-38 17-40 (181)
499 2dhr_A FTSH; AAA+ protein, hex 95.3 0.0099 3.4E-07 48.3 3.0 23 15-37 65-87 (499)
500 3v9p_A DTMP kinase, thymidylat 95.3 0.0075 2.5E-07 43.7 2.0 24 13-36 24-47 (227)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.9e-44 Score=263.61 Aligned_cols=207 Identities=36% Similarity=0.585 Sum_probs=142.4
Q ss_pred CCCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccch
Q 028300 1 MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLT 79 (211)
Q Consensus 1 ~~~~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 79 (211)
|+++..... -.+++||+|+|.+|||||||+++|..+.| ..+.+|.+.++....+...+..+.+.||||+|+++|..++
T Consensus 1 ms~~~~~~~-P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~ 79 (216)
T 4dkx_A 1 MSTGGDFGN-PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLI 79 (216)
T ss_dssp -------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGH
T ss_pred CCCCCCCCC-CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHH
Confidence 444443322 23679999999999999999999999998 6778999999988888889999999999999999999999
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec
Q 028300 80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA 159 (211)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 159 (211)
..+++.+|++++|||++++++|+++.. |...+... ...++|++||+||+|+.+.+.+..+++..++..++++|++|||
T Consensus 80 ~~~~~~a~~~ilv~di~~~~Sf~~i~~-~~~~i~~~-~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SA 157 (216)
T 4dkx_A 80 PSYIRDSAAAVVVYDITNVNSFQQTTK-WIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSA 157 (216)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBT
T ss_pred HHHhccccEEEEEeecchhHHHHHHHH-HHHHHHHh-cCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeC
Confidence 999999999999999999999999998 77776654 4568999999999999888899999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300 160 KTRENVEQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211 (211)
Q Consensus 160 ~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
++|.||+++|++|++.+........... .....+....+++++..+++|||
T Consensus 158 ktg~nV~e~F~~i~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~C~C 208 (216)
T 4dkx_A 158 KAGYNVKQLFRRVAAALPGMESTQDRSR-EDMIDIKLEKPQEQPVSEGGCSC 208 (216)
T ss_dssp TTTBSHHHHHHHHHHHC-----------------------------------
T ss_pred CCCcCHHHHHHHHHHHHHhhhccccccc-ccccccccCCCCCCCCCCCCCce
Confidence 9999999999999998876554333222 11222333455566667788887
No 2
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=2.7e-37 Score=224.83 Aligned_cols=172 Identities=51% Similarity=0.806 Sum_probs=153.7
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
..+..++|+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 357789999999999999999999999988 5677888888888888888889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC 168 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 168 (211)
+|+|||++++.++..+.. |+..+... ...++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++
T Consensus 84 vilv~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 161 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKM-WLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDA 161 (206)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999999988 87777655 3468999999999999887778888888888889999999999999999999
Q ss_pred HHHHHHHHHhccchh
Q 028300 169 FEQLALKIMEVPSLL 183 (211)
Q Consensus 169 ~~~i~~~~~~~~~~~ 183 (211)
|++|.+.+.+.....
T Consensus 162 ~~~l~~~i~~~~~~~ 176 (206)
T 2bcg_Y 162 FLTMARQIKESMSQQ 176 (206)
T ss_dssp HHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999988765443
No 3
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=7.3e-37 Score=222.37 Aligned_cols=180 Identities=29% Similarity=0.498 Sum_probs=148.5
Q ss_pred CCCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccch
Q 028300 1 MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLT 79 (211)
Q Consensus 1 ~~~~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 79 (211)
|.++.+........++|+|+|++|||||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||+||+..+...+
T Consensus 1 m~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 79 (206)
T 2bov_A 1 MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIR 79 (206)
T ss_dssp ----------CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred CCcccccCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHH
Confidence 667777777778899999999999999999999999887 55566666554 3556778888999999999999999889
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec
Q 028300 80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA 159 (211)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 159 (211)
..+++.+|++++|||+++.+++..+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++++++||
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (206)
T 2bov_A 80 DNYFRSGEGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSA 158 (206)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECT
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeC
Confidence 999999999999999999999999987 7777766545568999999999999877778888888899889999999999
Q ss_pred cCCCcHHHHHHHHHHHHHhccch
Q 028300 160 KTRENVEQCFEQLALKIMEVPSL 182 (211)
Q Consensus 160 ~~~~gv~~l~~~i~~~~~~~~~~ 182 (211)
+++.|++++|++|.+.+.+.+..
T Consensus 159 ~~g~gi~~l~~~l~~~i~~~~~~ 181 (206)
T 2bov_A 159 KTRANVDKVFFDLMREIRARKME 181 (206)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcccc
Confidence 99999999999999998876543
No 4
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-36 Score=221.65 Aligned_cols=180 Identities=44% Similarity=0.708 Sum_probs=143.6
Q ss_pred CCCCCCCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccch
Q 028300 1 MGSSSGQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLT 79 (211)
Q Consensus 1 ~~~~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~ 79 (211)
|++... ....+..++|+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+..++
T Consensus 1 Ms~~~~-~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 79 (223)
T 3cpj_B 1 MSSEDY-GYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAIT 79 (223)
T ss_dssp ----------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCC
T ss_pred CCcccc-CCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhH
Confidence 444433 33457889999999999999999999999988 5666788888888888888888999999999999999999
Q ss_pred hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec
Q 028300 80 SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA 159 (211)
Q Consensus 80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 159 (211)
..+++.+|++|+|||++++.+++.+.. |+..+... ...++|++||+||+|+.+.+.+..++...++...+++++++||
T Consensus 80 ~~~~~~~d~vilV~D~~~~~s~~~~~~-~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 157 (223)
T 3cpj_B 80 SAYYRGAVGALIVYDISKSSSYENCNH-WLSELREN-ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSA 157 (223)
T ss_dssp GGGTTTCCEEEEEEC-CCHHHHHHHHH-HHHHHHHH-CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCC
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHH-HHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 999999999999999999999999887 87777655 3468999999999999777778888888888889999999999
Q ss_pred cCCCcHHHHHHHHHHHHHhccchh
Q 028300 160 KTRENVEQCFEQLALKIMEVPSLL 183 (211)
Q Consensus 160 ~~~~gv~~l~~~i~~~~~~~~~~~ 183 (211)
+++.|++++|++|.+.+.+.....
T Consensus 158 ~~~~gi~~l~~~l~~~i~~~~~~~ 181 (223)
T 3cpj_B 158 LNSENVDKAFEELINTIYQKVSKH 181 (223)
T ss_dssp C-CCCHHHHHHHHHHHHTTCC---
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999988765443
No 5
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=2.8e-36 Score=219.49 Aligned_cols=198 Identities=32% Similarity=0.561 Sum_probs=147.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
....++|+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 45789999999999999999999999887 56777888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhcc---CCCccEEEEeecCCCCCCcccCHHHHHHHHH-HcCCeEEEeeccCCCcH
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYST---NQDCVKMLVGNKVDRDSERVVSREEGIALAK-EHGSLFLECSAKTRENV 165 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~gv 165 (211)
|+|||++++.++..+.. |...+..... ..++|+++|+||+|+. .+.+..++...++. ..+++++++||+++.|+
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDS-WRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 99999999999998877 7666654422 2578999999999997 44566677777776 56789999999999999
Q ss_pred HHHHHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCCC
Q 028300 166 EQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCCS 211 (211)
Q Consensus 166 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (211)
+++|++|.+.+.+.....+..+. ....+.....++..+.++||||
T Consensus 163 ~~l~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~c~c 207 (207)
T 1vg8_A 163 EQAFQTIARNALKQETEVELYNE-FPEPIKLDKNERAKASAESCSC 207 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-SCCCC-----------------
T ss_pred HHHHHHHHHHHHHhccccccccC-CCccccCCcccccccCCCCCCC
Confidence 99999999999876643322111 1112222222333477888987
No 6
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2e-34 Score=207.88 Aligned_cols=174 Identities=51% Similarity=0.817 Sum_probs=154.6
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA 86 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (211)
+...+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+
T Consensus 10 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (196)
T 3tkl_A 10 NPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 89 (196)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTC
T ss_pred CcccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhC
Confidence 34557889999999999999999999999887 66778888888888888899999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 166 (211)
|++++|||++++.+++.+.. |...+... ...++|+++|+||+|+.+.+.+...+...++..++++++++||+++.|++
T Consensus 90 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 167 (196)
T 3tkl_A 90 HGIIVVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 167 (196)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHH
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence 99999999999999999988 87777665 35689999999999998888888888899999999999999999999999
Q ss_pred HHHHHHHHHHHhccchh
Q 028300 167 QCFEQLALKIMEVPSLL 183 (211)
Q Consensus 167 ~l~~~i~~~~~~~~~~~ 183 (211)
++|++|.+.+.+.....
T Consensus 168 ~l~~~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 168 QSFMTMAAEIKKRMGPG 184 (196)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999998775543
No 7
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=9.5e-35 Score=209.05 Aligned_cols=171 Identities=49% Similarity=0.785 Sum_probs=148.5
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG 85 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (211)
+.......+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..++++
T Consensus 14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 93 (191)
T 2a5j_A 14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG 93 (191)
T ss_dssp CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence 345568899999999999999999999999888 4566777888887888888889999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV 165 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 165 (211)
+|++++|||++++++++.+.. |+..+... ...++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|+
T Consensus 94 ~d~ii~v~d~~~~~s~~~~~~-~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 94 AAGALLVYDITRRETFNHLTS-WLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNV 171 (191)
T ss_dssp CSEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999888 77777654 3468999999999999777778888888999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 028300 166 EQCFEQLALKIMEV 179 (211)
Q Consensus 166 ~~l~~~i~~~~~~~ 179 (211)
+++|++|.+.+.+.
T Consensus 172 ~~l~~~l~~~i~~~ 185 (191)
T 2a5j_A 172 EEAFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 8
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-34 Score=209.40 Aligned_cols=170 Identities=47% Similarity=0.786 Sum_probs=152.2
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
...+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 3467889999999999999999999999888 566788888888888888888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 167 (211)
++|+|||++++.+++.+.. |...+... ...++|+++|+||+|+.+.+.+..++...++..++++++++||+++.|+++
T Consensus 83 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQD-WSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQ 160 (203)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHH
Confidence 9999999999999999887 77777655 346899999999999988777888888889999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 028300 168 CFEQLALKIMEVP 180 (211)
Q Consensus 168 l~~~i~~~~~~~~ 180 (211)
+|++|.+.+.+..
T Consensus 161 l~~~l~~~i~~~~ 173 (203)
T 1zbd_A 161 TFERLVDVICEKM 173 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 9
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=2.6e-34 Score=204.24 Aligned_cols=168 Identities=50% Similarity=0.829 Sum_probs=149.1
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
...+..++|+|+|.+|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 4467889999999999999999999999887 566778888888888888888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 167 (211)
++++|||+++..+++.+.. |...+... ...++|+++|+||+|+.+.+.+..++..+++..++++++++||+++.|+++
T Consensus 90 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSS-WLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVED 167 (179)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEEEEeCcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999998887 77777655 346899999999999977777788888899999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 028300 168 CFEQLALKIME 178 (211)
Q Consensus 168 l~~~i~~~~~~ 178 (211)
+|++|.+.+.+
T Consensus 168 l~~~l~~~i~~ 178 (179)
T 1z0f_A 168 AFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 10
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=6.1e-35 Score=213.30 Aligned_cols=195 Identities=28% Similarity=0.507 Sum_probs=141.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
....++|+++|++|+|||||+++|.++.+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 35689999999999999999999999887 55667776555 34556677889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc--------cCHHHHHHHHHHcCC-eEEEeecc
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV--------VSREEGIALAKEHGS-LFLECSAK 160 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~--------v~~~~~~~~~~~~~~-~~~~~Sa~ 160 (211)
|+|||++++++++.+...|...+..+ ..++|+++|+||+|+.+.+. +..++...++..+++ +|+++||+
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 162 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSK 162 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCC
Confidence 99999999999999985588888765 34899999999999866543 367778888888886 89999999
Q ss_pred CCCcHHHHHHHHHHHHHhccchhcccccccccccccCCCCCCCCCCCCCC
Q 028300 161 TRENVEQCFEQLALKIMEVPSLLEEGSNVVKRNILKQKPENQSPPIGGCC 210 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (211)
++.|++++|++|.+.+.+.....+......+++. ..-.-...-.+|||
T Consensus 163 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~--~~c~~~~~~~~~~~ 210 (212)
T 2j0v_A 163 TQQNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRR--SGCSIASIVCGGCT 210 (212)
T ss_dssp TCTTHHHHHHHHHHHHHCC-------------------------------
T ss_pred CCCCHHHHHHHHHHHHhhhhhhcccccccccccC--CCcEEehHhhcccc
Confidence 9999999999999999877654443322222221 11112266678888
No 11
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.4e-34 Score=208.54 Aligned_cols=170 Identities=43% Similarity=0.779 Sum_probs=151.2
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
...+..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 4567889999999999999999999999888 567788888888888888888999999999999999998999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 167 (211)
++|+|||++++.+++.+.. |...+... ...++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|+++
T Consensus 101 ~~i~v~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPE-WLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEK 178 (201)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999998887 87777655 346899999999999977777888888888888899999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 028300 168 CFEQLALKIMEVP 180 (211)
Q Consensus 168 l~~~i~~~~~~~~ 180 (211)
+|++|.+.+.+..
T Consensus 179 l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 179 LFLDLACRLISEA 191 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 12
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.5e-34 Score=203.68 Aligned_cols=168 Identities=30% Similarity=0.400 Sum_probs=136.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh--hccchhhhccCCcEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER--FRTLTSSYYRGAQGI 89 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~~~~~~~~d~~ 89 (211)
...+||+++|++|+|||||+++|.+..+....++.+.++....+.+++..+.+.+||+||+.. +..+...+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 357999999999999999999999988866667788888777888888899999999999887 556667888999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
++|||++++.+++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++++++||++|.|++++|
T Consensus 82 i~v~d~~~~~s~~~~~~-~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 82 VIVYSIADRGSFESASE-LRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 99999999999999987 76666554345689999999999998777788888888888889999999999999999999
Q ss_pred HHHHHHHHhcc
Q 028300 170 EQLALKIMEVP 180 (211)
Q Consensus 170 ~~i~~~~~~~~ 180 (211)
++|.+.+...+
T Consensus 161 ~~l~~~~~~~~ 171 (175)
T 2nzj_A 161 EGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999886543
No 13
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=5.6e-34 Score=203.50 Aligned_cols=168 Identities=31% Similarity=0.516 Sum_probs=148.6
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
......+||+|+|++|+|||||+++|.+..+ ..+.++.+..+ ......++..+.+.+||+||++.+...+..+++++|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 4456789999999999999999999999887 56666666666 666778888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc-CCCcHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK-TRENVE 166 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~-~~~gv~ 166 (211)
++++|||++++.+++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++|+++||+ ++.|++
T Consensus 92 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~ 170 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDR-FHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD 170 (183)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence 9999999999999999988 77766555456789999999999998888889999999999999999999999 999999
Q ss_pred HHHHHHHHHHHh
Q 028300 167 QCFEQLALKIME 178 (211)
Q Consensus 167 ~l~~~i~~~~~~ 178 (211)
++|++|.+.+.+
T Consensus 171 ~l~~~l~~~i~~ 182 (183)
T 3kkq_A 171 KTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
No 14
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=4.4e-34 Score=203.69 Aligned_cols=169 Identities=36% Similarity=0.501 Sum_probs=147.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
....++|+++|++|+|||||+++|.++.+ ..+.++.+..+ ...+..++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 35789999999999999999999998887 66777777776 66677888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
++|||++++++++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++|+++||+++.|++++|
T Consensus 82 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 160 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKV-IHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF 160 (181)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence 99999999999999988 77766555456689999999999998888889999999999999999999999999999999
Q ss_pred HHHHHHHHhccc
Q 028300 170 EQLALKIMEVPS 181 (211)
Q Consensus 170 ~~i~~~~~~~~~ 181 (211)
++|.+.+.....
T Consensus 161 ~~l~~~~~~~~~ 172 (181)
T 3t5g_A 161 RRIILEAEKMDG 172 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHhcC
Confidence 999999887754
No 15
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.5e-34 Score=204.40 Aligned_cols=175 Identities=56% Similarity=0.948 Sum_probs=153.5
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
......++|+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 89 (195)
T 1x3s_A 10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ 89 (195)
T ss_dssp TTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 3445689999999999999999999999987 567788888888888888999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 167 (211)
++|+|||++++.++..+.. |+..+..+....++|+++|+||+|+. .+.+..++...++...+++++++||+++.|+++
T Consensus 90 ~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 90 GVILVYDVTRRDTFVKLDN-WLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 9999999999999999887 87777665445689999999999994 455677788888888999999999999999999
Q ss_pred HHHHHHHHHHhccchhcc
Q 028300 168 CFEQLALKIMEVPSLLEE 185 (211)
Q Consensus 168 l~~~i~~~~~~~~~~~~~ 185 (211)
+|++|.+.+.+....++.
T Consensus 168 l~~~l~~~~~~~~~~~~~ 185 (195)
T 1x3s_A 168 AFEELVEKIIQTPGLWES 185 (195)
T ss_dssp HHHHHHHHHHTSGGGTCC
T ss_pred HHHHHHHHHHhhhhhhcc
Confidence 999999999877655443
No 16
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=9.2e-35 Score=207.57 Aligned_cols=170 Identities=49% Similarity=0.829 Sum_probs=123.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
..+..++|+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (183)
T 2fu5_C 4 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMG 83 (183)
T ss_dssp CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSE
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCE
Confidence 356789999999999999999999998877 4556777777777777888888999999999999999989999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC 168 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 168 (211)
+++|||++++.+++.+.. |+..+... ...++|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++++
T Consensus 84 ~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 161 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRN-WIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENA 161 (183)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999999987 77777654 3468999999999999877778888888999999999999999999999999
Q ss_pred HHHHHHHHHhccc
Q 028300 169 FEQLALKIMEVPS 181 (211)
Q Consensus 169 ~~~i~~~~~~~~~ 181 (211)
|++|.+.+.+...
T Consensus 162 ~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 162 FFTLARDIKAKMD 174 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999998876543
No 17
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=6.7e-34 Score=204.26 Aligned_cols=171 Identities=46% Similarity=0.780 Sum_probs=152.0
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG 85 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (211)
.....+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+...+..+.+.+||+||++.+...+..+++.
T Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 94 (189)
T 2gf9_A 15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRG 94 (189)
T ss_dssp CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTT
T ss_pred CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccC
Confidence 345567889999999999999999999999988 5667888888887888888889999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV 165 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 165 (211)
+|++++|||++++.+++.+.. |...+... ...++|+++|+||+|+.+.+.+..++...++..++++++++||+++.|+
T Consensus 95 ~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 95 AMGFLLMYDIANQESFAAVQD-WATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINV 172 (189)
T ss_dssp CSEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 999999999999999999887 77777655 3468999999999999877777788888899999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 028300 166 EQCFEQLALKIMEV 179 (211)
Q Consensus 166 ~~l~~~i~~~~~~~ 179 (211)
+++|++|.+.+.+.
T Consensus 173 ~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 173 KQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988654
No 18
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=208.22 Aligned_cols=171 Identities=43% Similarity=0.745 Sum_probs=143.7
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA 86 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (211)
....+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||++++...+..+++.+
T Consensus 23 ~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 23 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp ---CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred ccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 35567789999999999999999999999888 56677777778777888888889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCcH
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTRENV 165 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~gv 165 (211)
|++|+|||++++++++.+.. |+..+... ...++|+++|+||+|+.+.+.+..++...++...++ +++++||+++.|+
T Consensus 103 d~iilv~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPH-WIEDVRKY-AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence 99999999999999999887 77777655 346899999999999987777888888899999999 9999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 028300 166 EQCFEQLALKIMEVP 180 (211)
Q Consensus 166 ~~l~~~i~~~~~~~~ 180 (211)
+++|++|.+.+.+..
T Consensus 181 ~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 181 EEAFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887643
No 19
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.2e-34 Score=205.41 Aligned_cols=170 Identities=42% Similarity=0.700 Sum_probs=150.5
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
...+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 99 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAV 99 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 4457789999999999999999999999888 456677788888888888888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 167 (211)
++|+|||++++.++..+.. |+..+... ...++|+++|+||+|+...+.+...+...++...+++++++||+++.|+++
T Consensus 100 ~vi~v~D~~~~~s~~~~~~-~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 100 GALLVFDLTKHQTYAVVER-WLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVEL 177 (193)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999998887 77766544 346899999999999977677788888888888999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 028300 168 CFEQLALKIMEVP 180 (211)
Q Consensus 168 l~~~i~~~~~~~~ 180 (211)
+|++|.+.+.+..
T Consensus 178 l~~~l~~~i~~~~ 190 (193)
T 2oil_A 178 AFETVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887643
No 20
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=2.9e-34 Score=201.73 Aligned_cols=164 Identities=29% Similarity=0.380 Sum_probs=122.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVY 93 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 93 (211)
.+||+++|++|+|||||+++|.+..+....++.+.++. ..+.+.+..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE-EEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE-EEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 58999999999999999999998777666677777663 56677889999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHH
Q 028300 94 DVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 94 d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
|++++++++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|++|.
T Consensus 81 d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 81 SVTDKGSFEKASE-LRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp ETTCHHHHHHHHH-HHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred ECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 9999999999988 666655443457899999999999988888888888999999999999999999999999999999
Q ss_pred HHHHhc
Q 028300 174 LKIMEV 179 (211)
Q Consensus 174 ~~~~~~ 179 (211)
+.+.+.
T Consensus 160 ~~~~~~ 165 (166)
T 3q72_A 160 RQIRLR 165 (166)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988754
No 21
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-33 Score=201.39 Aligned_cols=171 Identities=47% Similarity=0.820 Sum_probs=142.3
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSVD--DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG 85 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (211)
+...+..++|+++|++|+|||||+++|.+..+. .+.++.+.++....+..++..+.+.+||+||++.+...+..++++
T Consensus 4 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 83 (180)
T 2g6b_A 4 VDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRD 83 (180)
T ss_dssp -CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGG
T ss_pred cccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence 445678999999999999999999999998873 566777888777777888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV 165 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 165 (211)
+|++++|||++++.+++.+.. |+..+... ...++|+++|+||+|+.+.+.+..++...++..++++++++||+++.|+
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQA-WLTEIHEY-AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNV 161 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 999999999999999998887 77777655 3368999999999999887778888888888888999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 028300 166 EQCFEQLALKIMEVP 180 (211)
Q Consensus 166 ~~l~~~i~~~~~~~~ 180 (211)
+++|++|.+.+.+..
T Consensus 162 ~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 162 DLAFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887654
No 22
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.5e-34 Score=202.52 Aligned_cols=170 Identities=46% Similarity=0.793 Sum_probs=151.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
..+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 457889999999999999999999999887 5677888888888888888989999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC 168 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 168 (211)
+++|||++++.++..+.. |...+... ..++|+++|+||+|+.+.+.+...+...++...+++++++||+++.|++++
T Consensus 85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKR-WLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999887 77777654 458999999999999887778888888999999999999999999999999
Q ss_pred HHHHHHHHHhccch
Q 028300 169 FEQLALKIMEVPSL 182 (211)
Q Consensus 169 ~~~i~~~~~~~~~~ 182 (211)
|++|.+.+.+.+..
T Consensus 162 ~~~l~~~~~~~~~~ 175 (181)
T 3tw8_B 162 FNCITELVLRAKKD 175 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 99999988876543
No 23
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-34 Score=207.25 Aligned_cols=171 Identities=36% Similarity=0.628 Sum_probs=148.8
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG 85 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (211)
+....+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.
T Consensus 16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (192)
T 2fg5_A 16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG 95 (192)
T ss_dssp -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence 445668899999999999999999999999987 5788889988888888888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV 165 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 165 (211)
+|++++|||++++.+++.+.. |+..+... ...++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|+
T Consensus 96 ~d~iilV~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 173 (192)
T 2fg5_A 96 SAAAVIVYDITKQDSFYTLKK-WVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINI 173 (192)
T ss_dssp CSEEEEEEETTCTHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSH
T ss_pred CCEEEEEEeCCCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCH
Confidence 999999999999999999987 87777655 3468999999999999766777888888999889999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 028300 166 EQCFEQLALKIMEV 179 (211)
Q Consensus 166 ~~l~~~i~~~~~~~ 179 (211)
+++|++|.+.+.+.
T Consensus 174 ~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 174 EELFQGISRQIPPL 187 (192)
T ss_dssp HHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999877544
No 24
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=1.1e-33 Score=201.56 Aligned_cols=170 Identities=38% Similarity=0.643 Sum_probs=147.7
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
......+||+++|++|+|||||+++|.+..+ ....++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+|
T Consensus 7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 86 (181)
T 2efe_B 7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86 (181)
T ss_dssp ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCS
T ss_pred CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCC
Confidence 3456789999999999999999999999888 555678888888888888888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 167 (211)
++++|||++++.+++.+.. |+..+... ...++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|+++
T Consensus 87 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 164 (181)
T 2efe_B 87 AAIIVFDVTNQASFERAKK-WVQELQAQ-GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKE 164 (181)
T ss_dssp EEEEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHH
T ss_pred EEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 9999999999999999887 77776655 346899999999999987777888888899989999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 028300 168 CFEQLALKIMEVP 180 (211)
Q Consensus 168 l~~~i~~~~~~~~ 180 (211)
+|++|.+.+.+.+
T Consensus 165 l~~~l~~~~~~~~ 177 (181)
T 2efe_B 165 IFYEIARRLPRVQ 177 (181)
T ss_dssp HHHHHHHTCC---
T ss_pred HHHHHHHHHHhcC
Confidence 9999998776544
No 25
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1.1e-33 Score=202.76 Aligned_cols=169 Identities=31% Similarity=0.547 Sum_probs=142.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
..++||+++|++|||||||+++|.+..+ ..+.++. .+.....+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-CEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-hheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4689999999999999999999999887 4444444 3444566677888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
+|||++++.+++.+.. |...+.......+.|+++|+||+|+. ...+..+....++..++++++++||+++.|++++|+
T Consensus 81 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHH-YREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999988 77776665456789999999999986 345677788888889999999999999999999999
Q ss_pred HHHHHHHhccchh
Q 028300 171 QLALKIMEVPSLL 183 (211)
Q Consensus 171 ~i~~~~~~~~~~~ 183 (211)
+|.+.+.+.....
T Consensus 159 ~l~~~~~~~~~~~ 171 (189)
T 4dsu_A 159 TLVREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhc
Confidence 9999988766543
No 26
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=1.2e-33 Score=203.77 Aligned_cols=173 Identities=28% Similarity=0.539 Sum_probs=147.4
Q ss_pred CCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhcc
Q 028300 6 GQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYR 84 (211)
Q Consensus 6 ~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 84 (211)
.........+||+++|.+|+|||||+++|.+..+ ..+.++.+..+. ..+.+.+..+.+.+||+||++.+...+..+++
T Consensus 15 ~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 93 (194)
T 3reg_A 15 GKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYA 93 (194)
T ss_dssp ------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred ccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhcc
Confidence 3344567889999999999999999999999988 556677776665 35677888999999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC--cccCHHHHHHHHHHcCCe-EEEeeccC
Q 028300 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE--RVVSREEGIALAKEHGSL-FLECSAKT 161 (211)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~--~~v~~~~~~~~~~~~~~~-~~~~Sa~~ 161 (211)
++|++++|||++++.+++.+...|...+... ..++|+++|+||+|+.+. +.+..++...++..++++ |+++||++
T Consensus 94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 171 (194)
T 3reg_A 94 DSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVA 171 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTT
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCC
Confidence 9999999999999999999866588888755 468999999999999753 667888889999999988 99999999
Q ss_pred CCcHHHHHHHHHHHHHhccc
Q 028300 162 RENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 162 ~~gv~~l~~~i~~~~~~~~~ 181 (211)
+.|++++|++|.+.+.+.+.
T Consensus 172 ~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 172 KIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp TBSHHHHHHHHHHHHHCSCC
T ss_pred CCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999887654
No 27
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=7e-34 Score=200.31 Aligned_cols=165 Identities=39% Similarity=0.649 Sum_probs=146.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
....++|+++|++|+|||||+++|.++.+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++++|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 35789999999999999999999999887 55678888888888888888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
++|||++++.+++.+.. |...+... ...++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|
T Consensus 83 i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (170)
T 1r2q_A 83 IVVYDITNEESFARAKN-WVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 160 (170)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999887 76666554 34689999999999997767777888888888899999999999999999999
Q ss_pred HHHHHHHH
Q 028300 170 EQLALKIM 177 (211)
Q Consensus 170 ~~i~~~~~ 177 (211)
++|.+.+.
T Consensus 161 ~~i~~~~~ 168 (170)
T 1r2q_A 161 MAIAKKLP 168 (170)
T ss_dssp HHHHHTSC
T ss_pred HHHHHHHh
Confidence 99988664
No 28
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=7.8e-34 Score=203.19 Aligned_cols=170 Identities=50% Similarity=0.805 Sum_probs=150.8
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
...+..+||+|+|++|||||||+++|.+..+ ..+.++.+.++....+..++..+.+.+||+||++.+...+..+++++|
T Consensus 5 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 84 (186)
T 2bme_A 5 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAA 84 (186)
T ss_dssp CCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCC
Confidence 3457889999999999999999999999888 566777787888788888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 167 (211)
++++|||++++.++..+.. |...+... ...++|+++|+||+|+...+.+...+...++...+++++++||+++.|+++
T Consensus 85 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 85 GALLVYDITSRETYNALTN-WLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEE 162 (186)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 9999999999999999887 77766654 346899999999999977677888888888989999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q 028300 168 CFEQLALKIMEVP 180 (211)
Q Consensus 168 l~~~i~~~~~~~~ 180 (211)
+|++|.+.+.+..
T Consensus 163 l~~~l~~~~~~~~ 175 (186)
T 2bme_A 163 AFVQCARKILNKI 175 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 29
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=4.9e-34 Score=201.28 Aligned_cols=167 Identities=39% Similarity=0.684 Sum_probs=141.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
..+..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|+
T Consensus 2 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 2 SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred CCCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 346789999999999999999999999888 5677888888877778888888999999999999999889999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC 168 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 168 (211)
+++|||++++.+++.+.. |...+... ...++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++
T Consensus 82 ~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKN-WVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEEL 159 (170)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 999999999999999887 77776654 2357999999999999877778888888999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 028300 169 FEQLALKIME 178 (211)
Q Consensus 169 ~~~i~~~~~~ 178 (211)
|++|.+.+.+
T Consensus 160 ~~~l~~~~~~ 169 (170)
T 1z08_A 160 FLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999988764
No 30
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=1.3e-33 Score=198.97 Aligned_cols=165 Identities=37% Similarity=0.630 Sum_probs=148.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
..+.+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+....+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 46789999999999999999999999987 66788888888888888888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
++|||++++.++..+.. |...+... .....|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|
T Consensus 83 i~v~d~~~~~s~~~~~~-~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 160 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKN-WVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELF 160 (170)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHH
Confidence 99999999999999877 77777654 45689999999999998777778888888888899999999999999999999
Q ss_pred HHHHHHHH
Q 028300 170 EQLALKIM 177 (211)
Q Consensus 170 ~~i~~~~~ 177 (211)
++|.+.+.
T Consensus 161 ~~i~~~i~ 168 (170)
T 1z0j_A 161 IEISRRIP 168 (170)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHh
Confidence 99988764
No 31
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.3e-34 Score=206.64 Aligned_cols=171 Identities=47% Similarity=0.729 Sum_probs=141.8
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
...+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+|
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 99 (200)
T 2o52_A 20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA 99 (200)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCC
Confidence 3457889999999999999999999998887 556677787887788888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 167 (211)
++|+|||++++.+++.+.. |+..+... ...++|+++|+||+|+...+.+...+...++...+++++++||+++.|+++
T Consensus 100 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 100 GALLVYDITSRETYNSLAA-WLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 177 (200)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHH-TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999887 77766554 346899999999999977777788888888889999999999999999999
Q ss_pred HHHHHHHHHHhccc
Q 028300 168 CFEQLALKIMEVPS 181 (211)
Q Consensus 168 l~~~i~~~~~~~~~ 181 (211)
+|++|.+.+.+...
T Consensus 178 l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 178 AFLKCARTILNKID 191 (200)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876543
No 32
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=207.46 Aligned_cols=173 Identities=28% Similarity=0.438 Sum_probs=140.8
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA 86 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (211)
.......+||+|+|.+|||||||+++|.+..+ ..+.++.+..+ ...+.+.+..+.+.+||+||++.+...+..+++.+
T Consensus 18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (201)
T 3oes_A 18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGV 96 (201)
T ss_dssp -----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTC
T ss_pred CCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcC
Confidence 34456789999999999999999999999988 55556666655 45555666778999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 166 (211)
|++++|||++++++++.+.. |...+.......++|+++|+||+|+.+.+.+...+...++..++++|+++||+++.|++
T Consensus 97 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (201)
T 3oes_A 97 HGYVLVYSVTSLHSFQVIES-LYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQ 175 (201)
T ss_dssp CEEEEEEETTCHHHHHHHHH-HHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHH
T ss_pred CEEEEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence 99999999999999999987 77777655456689999999999998888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHhccch
Q 028300 167 QCFEQLALKIMEVPSL 182 (211)
Q Consensus 167 ~l~~~i~~~~~~~~~~ 182 (211)
++|++|.+.+.+....
T Consensus 176 ~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 176 GIFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhhhh
Confidence 9999999998876543
No 33
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-33 Score=198.49 Aligned_cols=163 Identities=45% Similarity=0.751 Sum_probs=144.8
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||+..+...+..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 468999999999999999999999887 5677888888888888888899999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC---cccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE---RVVSREEGIALAKEHGSLFLECSAKTRENVEQC 168 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~---~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 168 (211)
|||++++.++..+.. |...+... ...+.|+++|+||+|+.+. +.+..++...++...+++++++||+++.|++++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 82 VYDVTKPQSFIKARH-WVKELHEQ-ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159 (170)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred EEecCChHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999888 77766654 3468999999999999654 567778888888889999999999999999999
Q ss_pred HHHHHHHHH
Q 028300 169 FEQLALKIM 177 (211)
Q Consensus 169 ~~~i~~~~~ 177 (211)
|++|.+.+.
T Consensus 160 ~~~l~~~i~ 168 (170)
T 1ek0_A 160 FLGIGEKIP 168 (170)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHHHh
Confidence 999987653
No 34
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=2.7e-33 Score=199.34 Aligned_cols=168 Identities=35% Similarity=0.574 Sum_probs=145.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
....++|+++|++|+|||||+++|.+..+ ..+.++.+..+. ..+.+++..+.+.+||+||++++...+..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 45689999999999999999999999887 556666666655 5567788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
++|||+++++++..+.. |...+.......++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|
T Consensus 85 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGK-LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEETTCHHHHHHHHH-HHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 99999999999999988 66655333356689999999999998777788888888888899999999999999999999
Q ss_pred HHHHHHHHhcc
Q 028300 170 EQLALKIMEVP 180 (211)
Q Consensus 170 ~~i~~~~~~~~ 180 (211)
++|.+.+.+..
T Consensus 164 ~~l~~~~~~~~ 174 (181)
T 2fn4_A 164 EQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhh
Confidence 99999887654
No 35
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=4.6e-34 Score=209.35 Aligned_cols=172 Identities=35% Similarity=0.637 Sum_probs=147.0
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCE----------EEEEEEEeCCChhhhcc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGK----------RLKLTIWDTAGQERFRT 77 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~D~~g~~~~~~ 77 (211)
...+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+. .+.+.|||+||++.+..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 99 (217)
T 2f7s_A 20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRS 99 (217)
T ss_dssp -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHH
T ss_pred CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHh
Confidence 4567889999999999999999999998887 445566666666666666555 78999999999999999
Q ss_pred chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEe
Q 028300 78 LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLEC 157 (211)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 157 (211)
.+..+++.+|++|+|||+++..++..+.. |+..+.......++|+++|+||+|+.+.+.+..++...++..++++++++
T Consensus 100 ~~~~~~~~~d~iilV~D~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDLTSQQSFLNVRN-WMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET 178 (217)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHHHHHHHH-HHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHhcCCCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence 99999999999999999999999999887 87777655334689999999999997777788888889999999999999
Q ss_pred eccCCCcHHHHHHHHHHHHHhccc
Q 028300 158 SAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 158 Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
||+++.|++++|++|.+.+.+...
T Consensus 179 Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 179 SAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999998877543
No 36
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=203.77 Aligned_cols=169 Identities=44% Similarity=0.819 Sum_probs=143.3
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA 86 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (211)
....+..+||+|+|.+|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 35567889999999999999999999998887 56677888888888888888899999999999999998899999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-CCeEEEeeccCCCcH
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-GSLFLECSAKTRENV 165 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~gv 165 (211)
|++|+|||+++..+++.+.. |...+... ...++|+++|+||+|+.+.+.+..++...++... +++++++||+++.|+
T Consensus 100 d~iilV~D~~~~~s~~~~~~-~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPK-WMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV 177 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence 99999999999999999877 87777655 4468999999999999777777888888888774 789999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028300 166 EQCFEQLALKIME 178 (211)
Q Consensus 166 ~~l~~~i~~~~~~ 178 (211)
+++|++|.+.+.+
T Consensus 178 ~~l~~~l~~~i~~ 190 (192)
T 2il1_A 178 DEIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
No 37
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.7e-35 Score=209.54 Aligned_cols=172 Identities=45% Similarity=0.769 Sum_probs=153.7
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG 85 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (211)
.+...+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++....+...+..+.+.+||+||++.+...+..+++.
T Consensus 16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (191)
T 3dz8_A 16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG 95 (191)
T ss_dssp ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence 345567889999999999999999999999887 5666777888888888888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV 165 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 165 (211)
+|++++|||++++.+++.+.. |...+... ...++|+++|+||+|+.+.+.+..++...++..++++++++||+++.|+
T Consensus 96 ~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 173 (191)
T 3dz8_A 96 AMGFILMYDITNEESFNAVQD-WATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISV 173 (191)
T ss_dssp CCEEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred CCEEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 999999999999999999888 88887765 4568999999999999877788888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 028300 166 EQCFEQLALKIMEVP 180 (211)
Q Consensus 166 ~~l~~~i~~~~~~~~ 180 (211)
+++|++|.+.+.+..
T Consensus 174 ~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 174 RQAFERLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887653
No 38
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=203.69 Aligned_cols=172 Identities=27% Similarity=0.330 Sum_probs=141.1
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc-chhhhccC
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT-LTSSYYRG 85 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~ 85 (211)
+......+||+|+|++|||||||+++|.+..+ ....++.+.+.....+.+++..+.+.+||++|+..+.. ++..+++.
T Consensus 17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 96 (195)
T 3cbq_A 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT 96 (195)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence 34456789999999999999999999975443 22334455555666677888899999999999987664 67778899
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV 165 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 165 (211)
+|++|+|||++++.+++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++|+++||+++.|+
T Consensus 97 ~d~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 97 GDAFLIVFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNT 175 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence 999999999999999999988 7777665433468999999999999877778888888899889999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 028300 166 EQCFEQLALKIMEVP 180 (211)
Q Consensus 166 ~~l~~~i~~~~~~~~ 180 (211)
+++|++|++.+...+
T Consensus 176 ~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 176 RELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887544
No 39
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=1.9e-33 Score=197.78 Aligned_cols=164 Identities=37% Similarity=0.606 Sum_probs=146.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
+..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 5689999999999999999999999887 566778888888888888888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
+|||++++.+++.+.. |...+.... .+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+
T Consensus 83 ~v~d~~~~~s~~~~~~-~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 159 (168)
T 1z2a_A 83 LVFSTTDRESFEAISS-WREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFK 159 (168)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 9999999999998888 777766552 6899999999999977677778888888888999999999999999999999
Q ss_pred HHHHHHHh
Q 028300 171 QLALKIME 178 (211)
Q Consensus 171 ~i~~~~~~ 178 (211)
+|.+.+.+
T Consensus 160 ~l~~~~~~ 167 (168)
T 1z2a_A 160 YLAEKHLQ 167 (168)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99988764
No 40
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=2.5e-33 Score=201.65 Aligned_cols=172 Identities=35% Similarity=0.644 Sum_probs=148.8
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeE-EEEEEECCE---------EEEEEEEeCCChhhhcc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFK-IKLLTVAGK---------RLKLTIWDTAGQERFRT 77 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~-~~~~~~~~~---------~~~~~l~D~~g~~~~~~ 77 (211)
...+..+||+|+|++|+|||||+++|.+..+ ..+.++.+.++. ...+...+. .+.+.+||+||+..+..
T Consensus 6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 85 (195)
T 3bc1_A 6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS 85 (195)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence 3467889999999999999999999999887 566777777776 555555554 78999999999999999
Q ss_pred chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEe
Q 028300 78 LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLEC 157 (211)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 157 (211)
.+..+++++|++|+|||++++.++..+.. |+..+.......++|+++|+||+|+.+.+.+..++...++...+++++++
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQSFLNVRN-WISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET 164 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHHHHHTHHH-HHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHcCCCEEEEEEECCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999999887 77777665444789999999999997767778888888888899999999
Q ss_pred eccCCCcHHHHHHHHHHHHHhccc
Q 028300 158 SAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 158 Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
||+++.|++++|++|.+.+.+...
T Consensus 165 Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 165 SAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999998876543
No 41
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.9e-33 Score=201.87 Aligned_cols=168 Identities=39% Similarity=0.649 Sum_probs=144.8
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc-cchhhhccCCc
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR-TLTSSYYRGAQ 87 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-~~~~~~~~~~d 87 (211)
.....+||+|+|.+|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||++.+. .++..+++++|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 345679999999999999999999999888 5677788888888888888888999999999999988 88899999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCC---Cc
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTR---EN 164 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~---~g 164 (211)
++|+|||++++.++..+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++++++||+++ .|
T Consensus 96 ~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~ 174 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPA-WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH 174 (189)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence 9999999999999999888 7777766645678999999999999777778888888899899999999999999 99
Q ss_pred HHHHHHHHHHHHHh
Q 028300 165 VEQCFEQLALKIME 178 (211)
Q Consensus 165 v~~l~~~i~~~~~~ 178 (211)
++++|++|.+.+.+
T Consensus 175 i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 175 VEAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887653
No 42
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.5e-33 Score=206.40 Aligned_cols=173 Identities=26% Similarity=0.487 Sum_probs=142.3
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG 85 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (211)
.+......+||+|+|.+|||||||+++|.++.+ ..+.++.+..+ ...+.+++..+.+.+||++|++.+..++..++++
T Consensus 20 ~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 98 (214)
T 3q3j_B 20 APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD 98 (214)
T ss_dssp -------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred CCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCC
Confidence 445567789999999999999999999999988 55677777666 3455667778999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS- 152 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~- 152 (211)
+|++|+|||++++.+++.+...|...+... ..++|+++|+||+|+.+. +.+..++...++..+++
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 176 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAE 176 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCS
T ss_pred CeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCC
Confidence 999999999999999999644598888766 468999999999999653 56888899999999999
Q ss_pred eEEEeeccCCCc-HHHHHHHHHHHHHhccch
Q 028300 153 LFLECSAKTREN-VEQCFEQLALKIMEVPSL 182 (211)
Q Consensus 153 ~~~~~Sa~~~~g-v~~l~~~i~~~~~~~~~~ 182 (211)
+|+++||+++.| ++++|++|.+.+.+....
T Consensus 177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 177 IYLEGSAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHhccCcC
Confidence 999999999998 999999999998876543
No 43
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.8e-33 Score=198.31 Aligned_cols=165 Identities=27% Similarity=0.332 Sum_probs=131.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc-chhhhccCCcEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT-LTSSYYRGAQGIIL 91 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~i~ 91 (211)
.+||+++|++|+|||||+++|.+..+ ....++.+.+.....+.+++..+.+.+||+||+..+.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999997766 34445555666777778889999999999999988865 67778899999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 171 (211)
|||++++++++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 82 VFSVTDRRSFSKVPE-TLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCChHHHHHHHH-HHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence 999999999999988 6666655534458999999999999877888889999999999999999999999999999999
Q ss_pred HHHHHHhc
Q 028300 172 LALKIMEV 179 (211)
Q Consensus 172 i~~~~~~~ 179 (211)
+.+.+...
T Consensus 161 l~~~i~~~ 168 (169)
T 3q85_A 161 AVRQIRLR 168 (169)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99988764
No 44
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=2.3e-33 Score=200.65 Aligned_cols=171 Identities=31% Similarity=0.523 Sum_probs=144.5
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA 86 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (211)
+......+||+|+|++|+|||||+++|.+..+ ..+.++.+..+ ...+.+.+..+.+.+||+||+..+...+..+++.+
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 90 (187)
T 2a9k_A 12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG 90 (187)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence 44456789999999999999999999999887 45555555544 34567788889999999999999988899999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 166 (211)
|++++|||+++++++..+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++
T Consensus 91 d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 91 EGFLCVFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 169 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred CEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHH
Confidence 99999999999999999988 77776665455689999999999997777788888888999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 028300 167 QCFEQLALKIMEVP 180 (211)
Q Consensus 167 ~l~~~i~~~~~~~~ 180 (211)
++|++|.+.+.+.+
T Consensus 170 ~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 170 KVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887654
No 45
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2.8e-33 Score=197.33 Aligned_cols=164 Identities=55% Similarity=0.854 Sum_probs=139.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
..+||+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 578999999999999999999999887 5667777777777777778888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 171 (211)
|||++++.++..+.. |...+... ...++|+++|+||+|+ ..+.+..++...++..++++++++||+++.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 158 (170)
T 1g16_A 82 VYDITDERTFTNIKQ-WFKTVNEH-ANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 158 (170)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 999999999988887 77776654 3468999999999999 44556777888888888999999999999999999999
Q ss_pred HHHHHHhc
Q 028300 172 LALKIMEV 179 (211)
Q Consensus 172 i~~~~~~~ 179 (211)
|.+.+.+.
T Consensus 159 l~~~~~~~ 166 (170)
T 1g16_A 159 LAKLIQEK 166 (170)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988764
No 46
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=2.5e-33 Score=199.12 Aligned_cols=165 Identities=40% Similarity=0.659 Sum_probs=145.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
...++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 4679999999999999999999998887 566778888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
+|||++++.++..+.. |...+... ...++|+++|+||+|+.+.+.+...+...++...+++++++||+++.|++++|+
T Consensus 92 ~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 169 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSK-WIDDVRTE-RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR 169 (179)
T ss_dssp EEEETTCHHHHHTHHH-HHHHHHHH-HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEECCCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999887 76666544 346899999999999987777788888888888999999999999999999999
Q ss_pred HHHHHHHh
Q 028300 171 QLALKIME 178 (211)
Q Consensus 171 ~i~~~~~~ 178 (211)
+|.+.+.+
T Consensus 170 ~l~~~~~~ 177 (179)
T 2y8e_A 170 RVAAALPG 177 (179)
T ss_dssp HHHHTCC-
T ss_pred HHHHHHhh
Confidence 99886644
No 47
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.5e-33 Score=203.44 Aligned_cols=171 Identities=27% Similarity=0.358 Sum_probs=138.4
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCC--CCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh-hccchhhhccC
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSS--VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER-FRTLTSSYYRG 85 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~ 85 (211)
......+||+|+|.+|||||||+++|.+.. +....++.+.++....+.+++..+.+.+||++|... +..+...+++.
T Consensus 32 ~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 32 ESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp ---CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 455677999999999999999999999644 344445566676667778888899999999999776 45566778889
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV 165 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 165 (211)
+|++|+|||+++.++|+.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++|+++||++|.||
T Consensus 112 a~~~ilVydvt~~~sf~~~~~-~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v 190 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNV 190 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHH-HHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSH
T ss_pred CCEEEEEEECCCHHHHHHHHH-HHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999987 6665554323458999999999999776778878888888888999999999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 028300 166 EQCFEQLALKIMEVP 180 (211)
Q Consensus 166 ~~l~~~i~~~~~~~~ 180 (211)
+++|++|.+.+....
T Consensus 191 ~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 191 KELFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999875433
No 48
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=201.17 Aligned_cols=168 Identities=28% Similarity=0.445 Sum_probs=139.3
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA 86 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (211)
.......+||+++|++|||||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||++|++.+..+ ..+++.+
T Consensus 15 ~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~ 92 (187)
T 3c5c_A 15 YFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWA 92 (187)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTC
T ss_pred HhCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhC
Confidence 34457789999999999999999999999987 56677777665 345677888999999999999988774 6788999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhcc--CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec-cCCC
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYST--NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA-KTRE 163 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa-~~~~ 163 (211)
|++++|||++++++++.+.. |...+..... ..++|+++|+||+|+...+.+..++...++..++++|+++|| +++.
T Consensus 93 ~~~ilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~ 171 (187)
T 3c5c_A 93 HAFLVVYSVDSRQSFDSSSS-YLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFE 171 (187)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSH
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccc
Confidence 99999999999999999987 7777665422 368999999999999777778888899999999999999999 8999
Q ss_pred cHHHHHHHHHHHHHh
Q 028300 164 NVEQCFEQLALKIME 178 (211)
Q Consensus 164 gv~~l~~~i~~~~~~ 178 (211)
|++++|++|.+.+.+
T Consensus 172 gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 172 HVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhh
Confidence 999999999988754
No 49
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=4.2e-33 Score=195.84 Aligned_cols=164 Identities=32% Similarity=0.553 Sum_probs=140.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
..+||+++|++|+|||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||+||+.++...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 469999999999999999999999887 45555555554 3455778888999999999999998889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 171 (211)
|||++++++++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 82 VFSITEMESFAATAD-FREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 999999999999987 7777666545568999999999999777778888888899889999999999999999999999
Q ss_pred HHHHHHh
Q 028300 172 LALKIME 178 (211)
Q Consensus 172 i~~~~~~ 178 (211)
|.+.+.+
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998764
No 50
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-33 Score=203.44 Aligned_cols=167 Identities=29% Similarity=0.442 Sum_probs=138.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
...++|+++|++|||||||+++|.++.+ ..+.++.+..+. ..+..++..+.+.+||+||+..+...+..+++.+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 4579999999999999999999999887 455566554443 34566788889999999999999888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
+|||++++.+++.+.. |...+..... ..++|+++|+||+|+.+ +.+..++...++..++++++++||+++.|++++|
T Consensus 85 ~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGP-IYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEETTCHHHHHTTHH-HHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 9999999999998887 5555544322 35789999999999965 4566777888888889999999999999999999
Q ss_pred HHHHHHHHhccc
Q 028300 170 EQLALKIMEVPS 181 (211)
Q Consensus 170 ~~i~~~~~~~~~ 181 (211)
++|.+.+.+...
T Consensus 163 ~~l~~~~~~~~~ 174 (199)
T 2gf0_A 163 QELLTLETRRNM 174 (199)
T ss_dssp HHHHHHCSSSCE
T ss_pred HHHHHHHhhhhc
Confidence 999998766543
No 51
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=203.84 Aligned_cols=168 Identities=40% Similarity=0.683 Sum_probs=135.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
...+..+||+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 4456789999999999999999999999987 567788888888888888999999999999999999988999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC------CCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD------SERVVSREEGIALAKEHGSLFLECSAKT 161 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~------~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 161 (211)
++|+|||++++.++..+.. |+..+... ...++|+++|+||+|+. ..+.+..++...++...+++++++||++
T Consensus 103 ~iilv~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~ 180 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIRE-WVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKD 180 (199)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTT
T ss_pred EEEEEEECCChHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCC
Confidence 9999999999999999887 87777654 34579999999999985 3466777888888888999999999999
Q ss_pred CCcHHHHHHHHHHHHHh
Q 028300 162 RENVEQCFEQLALKIME 178 (211)
Q Consensus 162 ~~gv~~l~~~i~~~~~~ 178 (211)
+.|++++|++|.+.+.+
T Consensus 181 g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 181 GSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CTTHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998764
No 52
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=1.6e-32 Score=194.81 Aligned_cols=168 Identities=39% Similarity=0.672 Sum_probs=143.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
.....++|+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||+||+..+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 346789999999999999999999999887 5667888888888888888888999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhcc---CCCccEEEEeecCCCCCCcccCHHHHHHHHH-HcCCeEEEeeccCCCc
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYST---NQDCVKMLVGNKVDRDSERVVSREEGIALAK-EHGSLFLECSAKTREN 164 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~g 164 (211)
+++|||+++..++..+.. |...+..... ..++|+++|+||+|+. .+.+..++...++. ..+++++++||+++.|
T Consensus 83 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSN-WKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATN 160 (177)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 999999999999998877 7776654422 2688999999999996 45667778888877 5678999999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028300 165 VEQCFEQLALKIMEV 179 (211)
Q Consensus 165 v~~l~~~i~~~~~~~ 179 (211)
++++|++|.+.+.+.
T Consensus 161 i~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 161 VAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988764
No 53
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2e-33 Score=199.67 Aligned_cols=169 Identities=34% Similarity=0.572 Sum_probs=144.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECC-EEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAG-KRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
....++|+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+.+ ..+.+.+||+||++.+...+..+++++|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 35679999999999999999999998887 44566777777777777766 67899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhcc--CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYST--NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 166 (211)
+++|||++++++++.+.. |...+..+.. ....|+++|+||+|+.+.+.+..++...++..++++++++||+++.|++
T Consensus 83 ~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 161 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLED-WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVF 161 (178)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHH
Confidence 999999999999998876 7777655321 2334489999999997767778888888888899999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 028300 167 QCFEQLALKIMEVP 180 (211)
Q Consensus 167 ~l~~~i~~~~~~~~ 180 (211)
++|++|.+.+.+..
T Consensus 162 ~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 162 LCFQKVAAEILGIK 175 (178)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887654
No 54
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=9e-33 Score=197.66 Aligned_cols=166 Identities=20% Similarity=0.350 Sum_probs=139.2
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG 85 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (211)
+.......+||+|+|++|||||||+++|+++.+. .+.++ +..+ ...+.+++..+.+.+||++|++.+. +++.
T Consensus 13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~ 85 (184)
T 3ihw_A 13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW 85 (184)
T ss_dssp ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecC
Confidence 3455678899999999999999999999999884 45555 3333 3677888899999999999988766 6778
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC--CCcccCHHHHHHHHHHcC-CeEEEeeccCC
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD--SERVVSREEGIALAKEHG-SLFLECSAKTR 162 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~--~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~ 162 (211)
+|++++|||++++.+++.+.. |...+.......++|+++|+||+|+. ..+.+..++...++..++ ++|+++||+++
T Consensus 86 ~~~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 164 (184)
T 3ihw_A 86 VDAVVFVFSLEDEISFQTVYN-YFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYG 164 (184)
T ss_dssp CSEEEEEEETTCHHHHHHHHH-HHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTT
T ss_pred CCEEEEEEECcCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCC
Confidence 999999999999999999988 88877665334689999999999993 456778888899999887 89999999999
Q ss_pred CcHHHHHHHHHHHHHhcc
Q 028300 163 ENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 163 ~gv~~l~~~i~~~~~~~~ 180 (211)
.|++++|++|.+.+.+.+
T Consensus 165 ~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 165 LNVERVFQDVAQKVVALR 182 (184)
T ss_dssp BTHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999887654
No 55
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-32 Score=198.24 Aligned_cols=167 Identities=29% Similarity=0.561 Sum_probs=143.0
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
......++|+++|++|+|||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 91 (194)
T 2atx_A 13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTD 91 (194)
T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCC
Confidence 3446789999999999999999999999887 55666666554 345566777899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eE
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LF 154 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~ 154 (211)
++++|||+++++++..+...|...+... ..++|+++|+||+|+.+. +.+..++...++..+++ +|
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (194)
T 2atx_A 92 VFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY 169 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEE
Confidence 9999999999999999985588887765 358999999999999654 35777888888888887 89
Q ss_pred EEeeccCCCcHHHHHHHHHHHHHh
Q 028300 155 LECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 155 ~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
+++||+++.|++++|++|.+.+..
T Consensus 170 ~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 170 VECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999988763
No 56
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=4.4e-33 Score=195.55 Aligned_cols=164 Identities=35% Similarity=0.554 Sum_probs=140.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
.+++|+++|++|+|||||++++.++.+ ..+.++.+.. ....+.+.+....+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 468999999999999999999999887 4445555433 35667778888999999999999998888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQ 171 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 171 (211)
|||++++.+++.+.. |...+.......+.|+++|+||+|+.+.+.+...+...++..++++++++||+++.|++++|++
T Consensus 81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 81 VYSLVNQQSFQDIKP-MRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred EEeCCCHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 999999999999888 5555544434568999999999999777777888888888888999999999999999999999
Q ss_pred HHHHHHh
Q 028300 172 LALKIME 178 (211)
Q Consensus 172 i~~~~~~ 178 (211)
|.+.+.+
T Consensus 160 l~~~~~~ 166 (167)
T 1kao_A 160 IVRQMNY 166 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9988754
No 57
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=5e-33 Score=195.47 Aligned_cols=163 Identities=37% Similarity=0.614 Sum_probs=140.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
+.+||+++|++|+|||||+++|.++.+ ..+.++.+..+. ..+.+++..+.+.+||+||+..+...+..+++++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 468999999999999999999999887 455666665543 455667778999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-CCeEEEeeccCCCcHHHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-GSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~gv~~l~~ 170 (211)
|||++++.+++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..+ +.+++++||++|.|++++|+
T Consensus 81 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 81 VYSITAQSTFNDLQD-LREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEETTCHHHHHTHHH-HHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 999999999999888 6666655445578999999999999877777888888888887 78999999999999999999
Q ss_pred HHHHHHH
Q 028300 171 QLALKIM 177 (211)
Q Consensus 171 ~i~~~~~ 177 (211)
+|.+.+.
T Consensus 160 ~l~~~i~ 166 (167)
T 1c1y_A 160 DLVRQIN 166 (167)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998764
No 58
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-32 Score=201.21 Aligned_cols=172 Identities=55% Similarity=0.852 Sum_probs=145.2
Q ss_pred CCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhcc
Q 028300 6 GQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYR 84 (211)
Q Consensus 6 ~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 84 (211)
......+..++|+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++
T Consensus 12 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 91 (213)
T 3cph_A 12 GNGKSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYR 91 (213)
T ss_dssp --------CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHT
T ss_pred CCCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhc
Confidence 3445567789999999999999999999999887 567778888888788888888899999999999999999999999
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCc
Q 028300 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTREN 164 (211)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (211)
.+|++++|||++++.+++.+.. |+..+... ...++|+++|+||+|+ ..+.+..++...++..++++++++||+++.|
T Consensus 92 ~~d~ii~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 168 (213)
T 3cph_A 92 GAMGIILVYDVTDERTFTNIKQ-WFKTVNEH-ANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDN 168 (213)
T ss_dssp TCSEEEEEEETTCHHHHHTHHH-HHHHHHHH-TTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 9999999999999999998887 77776654 3457999999999999 4556677778888888899999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 028300 165 VEQCFEQLALKIMEVP 180 (211)
Q Consensus 165 v~~l~~~i~~~~~~~~ 180 (211)
++++|++|.+.+.+..
T Consensus 169 i~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 169 VNEIFFTLAKLIQEKI 184 (213)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887654
No 59
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=1.3e-32 Score=195.49 Aligned_cols=164 Identities=23% Similarity=0.332 Sum_probs=137.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
....+||+++|++|||||||+++|.++.+..+.++.+..+ ...+.+++..+.+.+||++|++. ..+++++|+++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 4568999999999999999999999999866777777554 46667788889999999999875 45678899999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhcc--CCCccEEEEeecCCCC--CCcccCHHHHHHHHHHc-CCeEEEeeccCCCcH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYST--NQDCVKMLVGNKVDRD--SERVVSREEGIALAKEH-GSLFLECSAKTRENV 165 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~viv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~gv 165 (211)
+|||++++++++.+.. |...+..... ..++|+++|+||+|+. ..+.+..++...++... +++++++||++|.|+
T Consensus 78 lv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSR-LHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156 (178)
T ss_dssp EEEETTCHHHHHHHHH-HHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred EEEECcCHHHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence 9999999999999988 6555543322 3589999999999993 45667788888888776 689999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 028300 166 EQCFEQLALKIMEVPS 181 (211)
Q Consensus 166 ~~l~~~i~~~~~~~~~ 181 (211)
+++|++|.+.+.+...
T Consensus 157 ~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 157 DRVFQEVAQKVVTLRK 172 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999998877644
No 60
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.3e-33 Score=199.65 Aligned_cols=169 Identities=33% Similarity=0.496 Sum_probs=143.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
.....+||+++|++|+|||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||+||+.. ...+..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 24 AKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ---CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 345689999999999999999999999888 45566666554 45567788889999999999887 6678889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC-cHHH
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE-NVEQ 167 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~-gv~~ 167 (211)
+++|||++++++++.+.. |...+.......++|+++|+||+|+.+.+.+..++...++..++++++++||+++. |+++
T Consensus 102 iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~ 180 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLP-LKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITE 180 (196)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHH
T ss_pred EEEEEECcCHHHHHHHHH-HHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHH
Confidence 999999999999999987 77776655455789999999999997777788888888998899999999999999 9999
Q ss_pred HHHHHHHHHHhccc
Q 028300 168 CFEQLALKIMEVPS 181 (211)
Q Consensus 168 l~~~i~~~~~~~~~ 181 (211)
+|++|.+.+.+.+.
T Consensus 181 l~~~l~~~i~~~~~ 194 (196)
T 2atv_A 181 IFYELCREVRRRRM 194 (196)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcc
Confidence 99999998876543
No 61
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.7e-32 Score=198.67 Aligned_cols=171 Identities=29% Similarity=0.499 Sum_probs=137.3
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA 86 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (211)
+......++|+++|++|+|||||+++|.+..+ ..+.++.+..+ ...+..++..+.+.+||+||++.+..++..++.++
T Consensus 14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 34567899999999999999999999998887 55566665444 34567788889999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC------------CcccCHHHHHHHHHHcCC-e
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS------------ERVVSREEGIALAKEHGS-L 153 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~------------~~~v~~~~~~~~~~~~~~-~ 153 (211)
|++++|||++++.++.++...|...+... ..++|+++|+||+|+.+ .+.+..++...++..++. +
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAAS 170 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcE
Confidence 99999999999999999975588887765 34899999999999864 245677788888888887 8
Q ss_pred EEEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300 154 FLECSAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 154 ~~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
|+++||+++.|++++|++|.+.+.+.+.
T Consensus 171 ~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 171 YIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999998876543
No 62
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=5.8e-32 Score=194.17 Aligned_cols=172 Identities=31% Similarity=0.515 Sum_probs=132.3
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG 85 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (211)
.+......++|+++|.+|||||||+++|.+..+ ..+.++.+..+ ...+.+.+..+.+.+||+||+..+...+..+++.
T Consensus 14 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 92 (190)
T 3con_A 14 LYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92 (190)
T ss_dssp -----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTT
T ss_pred ccccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCc
Confidence 344556789999999999999999999998887 44445544433 3556778888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV 165 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 165 (211)
+|++++|||+++..++..+.. |...+.......++|+++|+||+|+.. +.+..++...++..++++++++||+++.|+
T Consensus 93 ~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 170 (190)
T 3con_A 93 GEGFLCVFAINNSKSFADINL-YREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGV 170 (190)
T ss_dssp CSEEEEEEETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred CCEEEEEEECcCHHHHHHHHH-HHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 999999999999999999877 777776654456899999999999865 556778888888889999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 028300 166 EQCFEQLALKIMEVPS 181 (211)
Q Consensus 166 ~~l~~~i~~~~~~~~~ 181 (211)
+++|++|.+.+.+.+.
T Consensus 171 ~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 171 EDAFYTLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998876543
No 63
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=7.2e-32 Score=195.54 Aligned_cols=167 Identities=30% Similarity=0.552 Sum_probs=142.3
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
......+||+++|.+|+|||||+++|.+..+ ..+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++++|
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 98 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD 98 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence 3446789999999999999999999999887 555666666654 34677888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eE
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LF 154 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~ 154 (211)
++++|||+++++++..+...|...+... ..++|+++|+||+|+.+. +.+..++...++...+. ++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (201)
T 2gco_A 99 VILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 176 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence 9999999999999999965588887765 358999999999999765 44677788888888887 89
Q ss_pred EEeeccCCCcHHHHHHHHHHHHHh
Q 028300 155 LECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 155 ~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
+++||+++.|++++|++|.+.+.+
T Consensus 177 ~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 177 LECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999988754
No 64
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=2.1e-32 Score=195.70 Aligned_cols=165 Identities=26% Similarity=0.557 Sum_probs=140.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
....+||+++|++|+|||||+++|.+..+ ..+.++.+..+. ..+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 35679999999999999999999999888 556677766553 4566677889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcC-CeEEE
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHG-SLFLE 156 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~ 156 (211)
++|||++++++++++...|...+..+ ..++|+++|+||+|+.+. +.+..++...++..++ ++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 160 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence 99999999999999855588877665 358999999999999642 4577788888888887 68999
Q ss_pred eecc-CCCcHHHHHHHHHHHHHh
Q 028300 157 CSAK-TRENVEQCFEQLALKIME 178 (211)
Q Consensus 157 ~Sa~-~~~gv~~l~~~i~~~~~~ 178 (211)
+||+ ++.|++++|++|.+.+.+
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred eeecCCCcCHHHHHHHHHHHHhc
Confidence 9999 689999999999998764
No 65
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=6.3e-32 Score=195.88 Aligned_cols=164 Identities=32% Similarity=0.579 Sum_probs=141.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEE----------------------------
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKR---------------------------- 61 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------------------- 61 (211)
.+..+||+|+|++|+|||||+++|++..+ ..+.++.+.++....+.+.+..
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 35679999999999999999999999988 5677777777777766666544
Q ss_pred ---------EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCC
Q 028300 62 ---------LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDR 132 (211)
Q Consensus 62 ---------~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl 132 (211)
..+.+||+||+..+...+..+++.+|++++|||++++.++..+.. |+..+... .+.|+++|+||+|
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~-~~~~i~~~---~~~piilv~NK~D- 158 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKT-WVNQLKIS---SNYIIILVANKID- 158 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHH-HHHHHHHH---SCCEEEEEEECTT-
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHH-HHHHHHhh---CCCcEEEEEECCC-
Confidence 889999999999999999999999999999999999999999887 77776654 2399999999999
Q ss_pred CCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300 133 DSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 133 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
...+.+..++...++...+++++++||+++.|++++|++|.+.+.++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 159 KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 55567788888999999999999999999999999999999987654
No 66
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=6.2e-32 Score=193.13 Aligned_cols=167 Identities=29% Similarity=0.541 Sum_probs=142.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
...++|+++|++|+|||||+++|.++.+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 4689999999999999999999998887 55556665444 445677888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEEe
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLEC 157 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~ 157 (211)
+|||++++.++.++...|...+... ..++|+++|+||+|+.+. +.+..++...++...+. +++++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 159 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999985588877765 348999999999998653 45677778888888887 99999
Q ss_pred eccCCCcHHHHHHHHHHHHHhccc
Q 028300 158 SAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 158 Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
||++|.|++++|++|.+.+.+...
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 160 SALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred cCCCccCHHHHHHHHHHHHhcccc
Confidence 999999999999999998876543
No 67
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.5e-32 Score=195.65 Aligned_cols=169 Identities=36% Similarity=0.610 Sum_probs=129.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC-CEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA-GKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
....++|+++|++|+|||||+++|.+..+ ..+.++.+.++....+.+. +....+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 45689999999999999999999999887 5667777777777777666 556889999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhcc---CCCccEEEEeecCCCCC-CcccCHHHHHHHHH-HcCCeEEEeeccCCC
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYST---NQDCVKMLVGNKVDRDS-ERVVSREEGIALAK-EHGSLFLECSAKTRE 163 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~p~viv~nK~Dl~~-~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~ 163 (211)
+++|||++++.+++.+.. |...+..... ..++|+++|+||+|+.. .+.+..++...++. ..+++++++||+++.
T Consensus 85 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKS-WRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163 (182)
T ss_dssp EEEEEETTCHHHHHTHHH-HHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTB
T ss_pred EEEEEECCChHHHHHHHH-HHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 999999999999999887 7666654422 36889999999999953 34566777777777 466889999999999
Q ss_pred cHHHHHHHHHHHHHhcc
Q 028300 164 NVEQCFEQLALKIMEVP 180 (211)
Q Consensus 164 gv~~l~~~i~~~~~~~~ 180 (211)
|++++|++|.+.+.+++
T Consensus 164 gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 164 NVDTAFEEIARSALQQN 180 (182)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999887653
No 68
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-32 Score=198.80 Aligned_cols=166 Identities=26% Similarity=0.554 Sum_probs=139.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
.....+||+++|++|||||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|+
T Consensus 24 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 24 NQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 346789999999999999999999999988 45567776655 3455667778999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcC-CeEE
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHG-SLFL 155 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~ 155 (211)
+|+|||++++.+++++...|...+... ..++|+++|+||+|+.+. +.+..++...++..++ ++|+
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 180 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYI 180 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEE
Confidence 999999999999999854488877665 358999999999999642 4577788888888887 6899
Q ss_pred Eeecc-CCCcHHHHHHHHHHHHHh
Q 028300 156 ECSAK-TRENVEQCFEQLALKIME 178 (211)
Q Consensus 156 ~~Sa~-~~~gv~~l~~~i~~~~~~ 178 (211)
++||+ ++.|++++|++|.+.+.+
T Consensus 181 e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 181 ECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp ECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EeeeccCCcCHHHHHHHHHHHHhh
Confidence 99999 689999999999998764
No 69
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=1.7e-31 Score=187.15 Aligned_cols=162 Identities=31% Similarity=0.578 Sum_probs=138.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILV 92 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 92 (211)
.++|+++|++|+|||||+++|.+..+ ..+.++.+..+ ...+...+..+.+.+||+||+.++...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 68999999999999999999999887 44445554433 45567788889999999999999888889999999999999
Q ss_pred EECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300 93 YDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
||+++..++..+.. |...+.......++|+++|+||+|+.+ ..+...+...++..++++++++||+++.|++++|++|
T Consensus 82 ~d~~~~~~~~~~~~-~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 82 FAINNTKSFEDIHQ-YREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EETTCHHHHHHHHH-HHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EECCCHHHHHHHHH-HHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999877 777776654456899999999999866 4566777888888899999999999999999999999
Q ss_pred HHHHHh
Q 028300 173 ALKIME 178 (211)
Q Consensus 173 ~~~~~~ 178 (211)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998754
No 70
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=3.9e-33 Score=202.84 Aligned_cols=170 Identities=25% Similarity=0.387 Sum_probs=111.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhC--CC-CCCCCccceeeEEEEEEECCE--EEEEEEEeCCChhhhccchhhhccC
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISS--SV-DDLSPTIGVDFKIKLLTVAGK--RLKLTIWDTAGQERFRTLTSSYYRG 85 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~--~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~~~~~~~~~~~ 85 (211)
....++|+|+|++|+|||||+++|.+. .+ ..+.++.+.++....+.+.+. .+.+.+||+||+..+...+..++++
T Consensus 17 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 96 (208)
T 2yc2_C 17 ATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNG 96 (208)
T ss_dssp EEEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhh
Confidence 367899999999999999999999988 66 466677776676677777776 8899999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhcc--CCCccEEEEeecCCCCC-CcccCHHHHHHHHHHcCCeEEEeeccC-
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYST--NQDCVKMLVGNKVDRDS-ERVVSREEGIALAKEHGSLFLECSAKT- 161 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~p~viv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~- 161 (211)
+|++|+|||++++.+++.+.. |+..+..... ..++|+++|+||+|+.+ .+.+..++...++..++++++++||++
T Consensus 97 ~d~~i~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 175 (208)
T 2yc2_C 97 VYYAILVFDVSSMESFESCKA-WFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPP 175 (208)
T ss_dssp CCEEEEEEETTCHHHHHHHHH-HHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC---
T ss_pred CcEEEEEEECCCHHHHHHHHH-HHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCC
Confidence 999999999999999999987 8887776522 26899999999999987 677888888999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhccc
Q 028300 162 RENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 162 ~~gv~~l~~~i~~~~~~~~~ 181 (211)
+.|++++|++|.+.+.+...
T Consensus 176 ~~gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 176 GKDADAPFLSIATTFYRNYE 195 (208)
T ss_dssp ----CHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHH
Confidence 99999999999998876543
No 71
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=5.4e-32 Score=198.07 Aligned_cols=166 Identities=33% Similarity=0.609 Sum_probs=123.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
...+||+++|++|+|||||+++|.+..+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++++|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 4679999999999999999999998887 44555554443 455677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc------------ccCHHHHHHHHHHcCC-eEEEe
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER------------VVSREEGIALAKEHGS-LFLEC 157 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~-~~~~~ 157 (211)
+|||++++.+++.+...|...+... ..++|+++|+||+|+.... .+..++...++..+++ +|+++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999975588887765 3689999999999996543 5667778888888887 89999
Q ss_pred eccCCCcHHHHHHHHHHHHHhcc
Q 028300 158 SAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 158 Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
||++|.|++++|++|.+.+.+.+
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999988664
No 72
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=1.6e-32 Score=201.31 Aligned_cols=174 Identities=32% Similarity=0.493 Sum_probs=143.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECC-EEEEEEEEeCCChhhhccchhhhccCC
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAG-KRLKLTIWDTAGQERFRTLTSSYYRGA 86 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (211)
......+||+|+|.+|||||||+++|++..+ ..+.++.+.......+.... ..+.+.+||+||+..+...+..++..+
T Consensus 6 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 85 (218)
T 4djt_A 6 ERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGA 85 (218)
T ss_dssp ----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred ccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcC
Confidence 3446789999999999999999999998887 55567777776666655543 448899999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 166 (211)
|++|+|||+++..+++++.. |...+... ...++|+++|+||+|+.+.+.+...+...++...+++++++||+++.|++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 86 SGAILFFDVTSRITCQNLAR-WVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp SEEEEEEETTCHHHHHTHHH-HHHHHHHH-HCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTT
T ss_pred CEEEEEEeCCCHHHHHHHHH-HHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence 99999999999999999887 87777655 34568999999999998777788888888888889999999999999999
Q ss_pred HHHHHHHHHHHhccchhc
Q 028300 167 QCFEQLALKIMEVPSLLE 184 (211)
Q Consensus 167 ~l~~~i~~~~~~~~~~~~ 184 (211)
++|++|.+.+.+......
T Consensus 164 ~l~~~l~~~~~~~~~~~~ 181 (218)
T 4djt_A 164 LPFLHLARIFTGRPDLIF 181 (218)
T ss_dssp HHHHHHHHHHHCCTTCCB
T ss_pred HHHHHHHHHHhccccccc
Confidence 999999999988765543
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.9e-32 Score=191.15 Aligned_cols=165 Identities=28% Similarity=0.441 Sum_probs=137.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
..++|+++|++|+|||||+++|.++.+ ..+.++.+..+. ..+..++..+.+.+||+||+..+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 478999999999999999999999887 455566554443 345667788899999999999988888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhh-ccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLY-STNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
|||++++.+++.+.. |...+... ....++|+++|+||+|+.+.+.+...+...++..++++++++||+++.|++++|+
T Consensus 81 v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (172)
T 2erx_A 81 VYSITSRQSLEELKP-IYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 159 (172)
T ss_dssp EEETTCHHHHHTTHH-HHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence 999999999988887 55554433 1235799999999999977777777888888888899999999999999999999
Q ss_pred HHHHHHHhc
Q 028300 171 QLALKIMEV 179 (211)
Q Consensus 171 ~i~~~~~~~ 179 (211)
+|.+.+.+.
T Consensus 160 ~l~~~~~~~ 168 (172)
T 2erx_A 160 ELLNLEKRR 168 (172)
T ss_dssp HHHHTCCSS
T ss_pred HHHHHHhhh
Confidence 999866543
No 74
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-31 Score=193.96 Aligned_cols=167 Identities=30% Similarity=0.537 Sum_probs=138.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
....+||+++|.+|+|||||+++|.+..+ ..+.++.+..+. ..+..++..+.+.+||+||++.+...+..+++++|++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 35678999999999999999999999887 445566665554 3366788889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEE
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLE 156 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~ 156 (211)
++|||+++++++..+...|...+... ..++|+++|+||+|+.+. +.+..++...++...+. ++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE 178 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEE
Confidence 99999999999999955588887764 358999999999999654 34667777888888887 8999
Q ss_pred eeccCCCcHHHHHHHHHHHHHhcc
Q 028300 157 CSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 157 ~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
+||+++.|++++|++|.+.+....
T Consensus 179 ~SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 179 CSAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHSCC
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999887653
No 75
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=2.4e-31 Score=191.49 Aligned_cols=168 Identities=27% Similarity=0.367 Sum_probs=135.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCC--CCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh-hccchhhhccCCcE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSS--VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER-FRTLTSSYYRGAQG 88 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-~~~~~~~~~~~~d~ 88 (211)
...+||+++|.+|||||||+++|.+.. +....++.+.++....+.+++..+.+.+||++|... +..+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 356999999999999999999999643 344444566666667778888899999999999765 45566778889999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC 168 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 168 (211)
+++|||+++.++|+.+.. |...+.......++|+++|+||+|+...+.+..++...++..++++|+++||++|.||+++
T Consensus 84 ~i~v~dv~~~~s~~~~~~-~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASE-LRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEETTCHHHHHHHHH-HHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 999999999999999887 6665554323458999999999999766677777777788888899999999999999999
Q ss_pred HHHHHHHHHhcc
Q 028300 169 FEQLALKIMEVP 180 (211)
Q Consensus 169 ~~~i~~~~~~~~ 180 (211)
|++|.+.+....
T Consensus 163 f~~l~~~~~~~~ 174 (192)
T 2cjw_A 163 FEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc
Confidence 999999886543
No 76
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=1.4e-32 Score=195.88 Aligned_cols=166 Identities=33% Similarity=0.597 Sum_probs=125.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
+....+||+++|++|+|||||++++....+ ..+.++.+..+. ..+.+.+..+.+.+||+||++++...+..+++++|+
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 82 (182)
T 3bwd_D 4 SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADV 82 (182)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCE
Confidence 345679999999999999999999998887 445555553332 123345567788899999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc----------cCHHHHHHHHHHcCC-eEEEe
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV----------VSREEGIALAKEHGS-LFLEC 157 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~~~ 157 (211)
+++|||++++.+++.+...|...+... ..++|+++|+||+|+.+.+. +..++...++..++. +|+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 160 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC 160 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999985588888765 34899999999999866544 366778888888886 89999
Q ss_pred eccCCCcHHHHHHHHHHHHHh
Q 028300 158 SAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 158 Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
||+++.|++++|++|.+.+..
T Consensus 161 Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 161 SSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CTTTCTTHHHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999987753
No 77
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=7.7e-32 Score=190.16 Aligned_cols=161 Identities=21% Similarity=0.332 Sum_probs=127.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
...++|+++|++|+|||||+++|.++.+..+.++.+.... .+.+. ...+.+||+||+..+...+..+++.+|++++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 80 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE--TVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY 80 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceE--EEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence 4579999999999999999999999988777777765443 33443 5789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHH-----HHHcCCeEEEeeccCCCcHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIAL-----AKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv~ 166 (211)
|||+++++++......+...+... ...++|+++|+||+|+.+... ..+.... +...+++++++||+++.|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (171)
T 1upt_A 81 VVDSCDRDRIGISKSELVAMLEEE-ELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157 (171)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhch-hhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence 999999999999887444444322 346899999999999966432 2222211 22345689999999999999
Q ss_pred HHHHHHHHHHHhc
Q 028300 167 QCFEQLALKIMEV 179 (211)
Q Consensus 167 ~l~~~i~~~~~~~ 179 (211)
++|++|.+.+.+.
T Consensus 158 ~l~~~l~~~i~~~ 170 (171)
T 1upt_A 158 EAMEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988654
No 78
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=4.5e-32 Score=199.36 Aligned_cols=170 Identities=31% Similarity=0.562 Sum_probs=147.2
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA 86 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (211)
.......+||+++|.+|||||||+++|+.+.+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 88 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA 88 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence 34556789999999999999999999777766 66778889999988889999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 166 (211)
|++++|||+++..++..+.. |...+... ..++|+++|+||+|+.+..... +...++...+++|+++||+++.|++
T Consensus 89 ~~~i~v~d~~~~~s~~~~~~-~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 89 QCAIIMFDVTSRVTYKNVPN-WHRDLVRV--CENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp CEEEEEEETTCHHHHHTHHH-HHHHHHHH--STTCCEEEEEECTTSSSCSSCG--GGCCHHHHHTCEEEECBGGGTBTTT
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHHh--CCCCCEEEEEECCccccccccH--HHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999987 87777665 3589999999999996544322 4456677788999999999999999
Q ss_pred HHHHHHHHHHHhccch
Q 028300 167 QCFEQLALKIMEVPSL 182 (211)
Q Consensus 167 ~l~~~i~~~~~~~~~~ 182 (211)
++|++|.+.+......
T Consensus 164 ~l~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 164 KPFLWLARKLIGDPNL 179 (221)
T ss_dssp HHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhCccc
Confidence 9999999999877654
No 79
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=5.4e-34 Score=206.39 Aligned_cols=168 Identities=53% Similarity=0.864 Sum_probs=137.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
..+..+||+|+|.+|||||||+++|.+..+ ..+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++++|+
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 108 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence 346789999999999999999999998877 4556677778888888888889999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC 168 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 168 (211)
+++|||++++.+++.+.. |+..+... ...++|+++|+||+|+.+.+.+...+...++..++++++++||+++.|++++
T Consensus 109 ~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l 186 (199)
T 3l0i_B 109 IIVVYDVTDQESFNNVKQ-WLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 186 (199)
T ss_dssp EEECC-CCCSHHHHHHHH-HHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHH
T ss_pred EEEEEECCCHHHHHHHHH-HHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 999999999999999988 87777654 3458999999999999877767666677888888999999999999999999
Q ss_pred HHHHHHHHHhc
Q 028300 169 FEQLALKIMEV 179 (211)
Q Consensus 169 ~~~i~~~~~~~ 179 (211)
|++|.+.+.+.
T Consensus 187 ~~~l~~~l~~~ 197 (199)
T 3l0i_B 187 FMTMAAEIKKR 197 (199)
T ss_dssp HHHHTTTTTTT
T ss_pred HHHHHHHHHHh
Confidence 99998876543
No 80
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.98 E-value=1.9e-31 Score=193.73 Aligned_cols=163 Identities=28% Similarity=0.515 Sum_probs=135.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
....+||+++|.+|+|||||+++|..+.+ ..+.++.+. .....+.+++..+.+.+||+||++.+...+..+++++|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 36789999999999999999999998887 455555543 3445566777888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc------------cCHHHHHHHHHHcCC-eEEE
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV------------VSREEGIALAKEHGS-LFLE 156 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~------------v~~~~~~~~~~~~~~-~~~~ 156 (211)
++|||++++.+++++...|...+... ..++|+++|+||+|+..... +...+...++...+. ++++
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 183 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEE
Confidence 99999999999999985588888766 36899999999999865433 667778888888886 5999
Q ss_pred eeccCCCcHHHHHHHHHHHH
Q 028300 157 CSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 157 ~Sa~~~~gv~~l~~~i~~~~ 176 (211)
+||++|.|++++|++|.+.+
T Consensus 184 ~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 184 CSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CCTTTCTTHHHHHHHHHHTT
T ss_pred eeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999998754
No 81
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.98 E-value=6.1e-32 Score=194.94 Aligned_cols=168 Identities=22% Similarity=0.278 Sum_probs=134.6
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCC-----------CCccceeeEEEEE-EECCEEEEEEEEeCCChhhhc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDL-----------SPTIGVDFKIKLL-TVAGKRLKLTIWDTAGQERFR 76 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~l~D~~g~~~~~ 76 (211)
...+..+||+++|++|||||||++.+.+.....+ .++.+.++....+ .+++..+.+.+||+||++.+.
T Consensus 9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 4557889999999999999999976665443332 2344444443333 445678899999999999999
Q ss_pred cchhhhccCCcEEEEEEECC------ChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc
Q 028300 77 TLTSSYYRGAQGIILVYDVT------RRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH 150 (211)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~ 150 (211)
..+..+++++|++|+|||++ +.+++..+.. |+..+.. ...++|+++|+||+|+.+. +..+++..++..+
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~-~l~~~~~--~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~ 163 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRE-NLAEYGL--TLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPE 163 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHH-HHHHTTC--CTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTT
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHH-HHHhhcc--ccCCCCEEEEEEchhcccc--cCHHHHHHHHHhc
Confidence 99999999999999999999 5566777766 6666632 3578999999999999654 6778888888888
Q ss_pred CC-eEEEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300 151 GS-LFLECSAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 151 ~~-~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
++ +++++||+++.|++++|++|.+.+.+...
T Consensus 164 ~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 164 GKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp CCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred CCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 98 99999999999999999999998877543
No 82
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.98 E-value=8.6e-32 Score=194.53 Aligned_cols=171 Identities=14% Similarity=0.269 Sum_probs=127.7
Q ss_pred CCCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhc
Q 028300 6 GQSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVD--DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYY 83 (211)
Q Consensus 6 ~~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~ 83 (211)
++........+|+|+|.+|||||||+++|.+..+. .+.++.+..... + ....+.+.+||+||++.+...+..++
T Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~ 84 (199)
T 4bas_A 9 HHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--F--EKGRVAFTVFDMGGAKKFRGLWETYY 84 (199)
T ss_dssp -------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--E--EETTEEEEEEEECCSGGGGGGGGGGC
T ss_pred ccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHH
Confidence 35567788999999999999999999999999884 457777755442 2 34557899999999999999999999
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhcc------CCCccEEEEeecCCCCCCcccC---HHHHHHH-HHHcCCe
Q 028300 84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYST------NQDCVKMLVGNKVDRDSERVVS---REEGIAL-AKEHGSL 153 (211)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~------~~~~p~viv~nK~Dl~~~~~v~---~~~~~~~-~~~~~~~ 153 (211)
+++|++|+|||+++.+++..+...+...+..... ..++|+++|+||+|+....... ....... +...+++
T Consensus 85 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (199)
T 4bas_A 85 DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFV 164 (199)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEE
T ss_pred hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeE
Confidence 9999999999999999999998844444433211 1389999999999997653221 1111111 1346778
Q ss_pred EEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 154 FLECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 154 ~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
++++||+++.|++++|++|.+.+.+..
T Consensus 165 ~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 165 IFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999887654
No 83
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.98 E-value=3e-32 Score=191.09 Aligned_cols=157 Identities=22% Similarity=0.369 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEE
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYD 94 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d 94 (211)
+||+++|++|+|||||+++|.++.+..+.|+.+.... .+. .....+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEE--EEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEE--EEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 5899999999999999999999888666777764433 222 345789999999999999889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-----HHcCCeEEEeeccCCCcHHHHH
Q 028300 95 VTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-----KEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
+++++++..+.. |...+.......+.|+++|+||+|+.+.. ...+..... ...+++++++||+++.|++++|
T Consensus 77 ~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 77 SNDRERVNEARE-ELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp TTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred CCCHHHHHHHHH-HHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999887 55444332245689999999999996542 222222111 1134579999999999999999
Q ss_pred HHHHHHHHh
Q 028300 170 EQLALKIME 178 (211)
Q Consensus 170 ~~i~~~~~~ 178 (211)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999987754
No 84
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.1e-30 Score=187.76 Aligned_cols=157 Identities=23% Similarity=0.309 Sum_probs=126.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
.+.++|+++|++|||||||++++.+..+..+.++.+... ..+.+++ ..+.+||+||+..+...+..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE--EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 457899999999999999999999998877777777653 3445554 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH------------cCCeEEEeec
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE------------HGSLFLECSA 159 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~------------~~~~~~~~Sa 159 (211)
|||++++++++++.. |...+.......++|+++|+||+|+.+ .+..++..+.... .+++++++||
T Consensus 97 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 173 (190)
T 1m2o_B 97 LVDAADPERFDEARV-ELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV 173 (190)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred EEECCChHHHHHHHH-HHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence 999999999999988 555443332346899999999999965 4555555554432 3457999999
Q ss_pred cCCCcHHHHHHHHHHH
Q 028300 160 KTRENVEQCFEQLALK 175 (211)
Q Consensus 160 ~~~~gv~~l~~~i~~~ 175 (211)
++|.|++++|++|.+.
T Consensus 174 ~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 174 VMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTBSHHHHHHHHHTT
T ss_pred CcCCCHHHHHHHHHhh
Confidence 9999999999998753
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=6.9e-32 Score=193.63 Aligned_cols=163 Identities=21% Similarity=0.367 Sum_probs=126.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQG 88 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ 88 (211)
.....+||+|+|++|+|||||+++|.+..+ ..+.++.+.++.. +. ...+.+.+||+||+..+...+..+++++|+
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSA 93 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCE
Confidence 345689999999999999999999999888 4677777776653 22 245789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCC
Q 028300 89 IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRE 163 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~ 163 (211)
+++|||+++++++..+...+...+.. ....++|+++|+||+|+.... ...+...... ..+++++++||+++.
T Consensus 94 ii~v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 170 (188)
T 1zd9_A 94 IVYMVDAADQEKIEASKNELHNLLDK-PQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKD 170 (188)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTC-GGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhC-cccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCC
Confidence 99999999999999988844444332 234689999999999996542 2222222111 234579999999999
Q ss_pred cHHHHHHHHHHHHHhc
Q 028300 164 NVEQCFEQLALKIMEV 179 (211)
Q Consensus 164 gv~~l~~~i~~~~~~~ 179 (211)
|++++|++|.+.+.+.
T Consensus 171 gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 171 NIDITLQWLIQHSKSR 186 (188)
T ss_dssp THHHHHHHHHHTCC--
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999876543
No 86
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=5.1e-31 Score=190.65 Aligned_cols=157 Identities=22% Similarity=0.315 Sum_probs=120.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
.+.++|+++|++|||||||+++|.++.+..+.++.+.+.. .+.+++ ..+.+||+||++.++..+..+++.+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 4578999999999999999999999888777777776543 444554 789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-----------------cCCeE
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-----------------HGSLF 154 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-----------------~~~~~ 154 (211)
|||+++++++.++.. |...+.......++|+++|+||+|+.+ .+..++...+... .++++
T Consensus 99 v~D~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 99 LVDCADHERLLESKE-ELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEECCCHHHHHHHHH-HHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 999999999999988 555544332346899999999999965 4566666665542 24579
Q ss_pred EEeeccCCCcHHHHHHHHHHH
Q 028300 155 LECSAKTRENVEQCFEQLALK 175 (211)
Q Consensus 155 ~~~Sa~~~~gv~~l~~~i~~~ 175 (211)
+++||++|.|++++|++|.+.
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999998764
No 87
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=2.1e-31 Score=190.00 Aligned_cols=162 Identities=24% Similarity=0.354 Sum_probs=123.7
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA 86 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (211)
......+.+||+++|.+|+|||||+++|.+..+..+.++.+..... +.+.+ ..+.+||+||++.+...+..+++++
T Consensus 14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~--~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~ 89 (181)
T 2h17_A 14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEE--IVINN--TRFLMWDIGGQESLRSSWNTYYTNT 89 (181)
T ss_dssp -------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEE--EEETT--EEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEE--EEECC--EEEEEEECCCCHhHHHHHHHHhccC
Confidence 3455578899999999999999999999999886666777765543 33333 7899999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-----HHcCCeEEEeeccC
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-----KEHGSLFLECSAKT 161 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~ 161 (211)
|++++|||+++.++++.+...+...+.. ....++|+++|+||+|+.+. ...++..... ...+++++++||++
T Consensus 90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 166 (181)
T 2h17_A 90 EFVIVVVDSTDRERISVTREELYKMLAH-EDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALT 166 (181)
T ss_dssp CEEEEEEETTCTTTHHHHHHHHHHHHTC-GGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhC-hhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 9999999999999999998844444432 23468999999999999653 2333333322 12345899999999
Q ss_pred CCcHHHHHHHHHHH
Q 028300 162 RENVEQCFEQLALK 175 (211)
Q Consensus 162 ~~gv~~l~~~i~~~ 175 (211)
+.|++++|++|.+.
T Consensus 167 g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 167 GEGLCQGLEWMMSR 180 (181)
T ss_dssp TBTHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHhh
Confidence 99999999998753
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=187.48 Aligned_cols=164 Identities=22% Similarity=0.301 Sum_probs=124.2
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCC-C-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCC
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSS-V-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGA 86 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 86 (211)
....+.+||+|+|.+|+|||||+++|.+.. + ..+.++.+.. ...+.+. +..+.+||+||++.+...+..+++++
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~ 91 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEG 91 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcC
Confidence 445678999999999999999999999887 3 5556666643 3334443 47899999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhccC--CCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeec
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYSTN--QDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSA 159 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa 159 (211)
|++++|||+++++++..+.. |...+...... .++|+++|+||+|+.+. ...++...... ..+++++++||
T Consensus 92 d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (190)
T 2h57_A 92 QAIIFVIDSSDRLRMVVAKE-ELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDA 168 (190)
T ss_dssp SEEEEEEETTCHHHHHHHHH-HHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred CEEEEEEECCCHHHHHHHHH-HHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccC
Confidence 99999999999999999888 44444332222 68999999999999653 34445544442 23568999999
Q ss_pred cCCCcHHHHHHHHHHHHHhc
Q 028300 160 KTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 160 ~~~~gv~~l~~~i~~~~~~~ 179 (211)
+++.|++++|++|.+.+.+.
T Consensus 169 ~~~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 169 IKGEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp TTTBTHHHHHHHHHHHC---
T ss_pred CCCcCHHHHHHHHHHHHHHh
Confidence 99999999999999877543
No 89
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=3.6e-30 Score=184.21 Aligned_cols=161 Identities=24% Similarity=0.378 Sum_probs=127.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
...++|+++|++|+|||||++++.+.....+.++.+.... .+.+. ...+.+||+||+.++...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK--TLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE--EEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 5789999999999999999999998876667777775543 33343 4789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVE 166 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~ 166 (211)
|||++++++++++.. |...+.......++|+++|+||+|+.+... .++...... ..+++++++||+++.|++
T Consensus 92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 92 VVDSADRQRMQDCQR-ELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 999999999999888 444443322446899999999999965432 233322221 235689999999999999
Q ss_pred HHHHHHHHHHHhc
Q 028300 167 QCFEQLALKIMEV 179 (211)
Q Consensus 167 ~l~~~i~~~~~~~ 179 (211)
++|++|.+.+.+.
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988665
No 90
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=1.3e-31 Score=192.84 Aligned_cols=161 Identities=22% Similarity=0.344 Sum_probs=120.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
....+||+++|++|||||||+++|..+.+..+.++.+... ..+.. ..+.+.+||+||++.+...+..+++++|+++
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEE--EEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeE--EEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4678999999999999999999999888765555655332 23333 3478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-----HHcCCeEEEeeccCCCcH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-----KEHGSLFLECSAKTRENV 165 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv 165 (211)
+|||++++++++.+.. |...+.......++|+++|+||+|+.+.. ...+..... ...+++++++||+++.|+
T Consensus 102 lv~D~~~~~s~~~~~~-~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 102 FVVDSNDRERVQESAD-ELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEETTCGGGHHHHHH-HHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEECCCHHHHHHHHH-HHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 9999999999999887 55444333244689999999999996542 222222111 123457999999999999
Q ss_pred HHHHHHHHHHHHh
Q 028300 166 EQCFEQLALKIME 178 (211)
Q Consensus 166 ~~l~~~i~~~~~~ 178 (211)
+++|++|.+.+.+
T Consensus 179 ~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 179 YDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987754
No 91
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=1.5e-29 Score=183.03 Aligned_cols=168 Identities=45% Similarity=0.738 Sum_probs=144.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGI 89 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~ 89 (211)
++..++|+++|++|||||||+++|.+..+ ..+.++.+.++....+.+++..+.+.+||++|++.+...+..++..+|++
T Consensus 2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 35689999999999999999999999887 55667777788778888899999999999999999988888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHH
Q 028300 90 ILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 169 (211)
++|+|+++..+++++.. |...+... ...+.|+++++||+|+.+.+.+...++..++...++.++++|++++.|++++|
T Consensus 82 i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~ 159 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 159 (199)
T ss_dssp EEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999888876 76665543 34578999999999997767777788888888899999999999999999999
Q ss_pred HHHHHHHHhcc
Q 028300 170 EQLALKIMEVP 180 (211)
Q Consensus 170 ~~i~~~~~~~~ 180 (211)
++|.+.+.+..
T Consensus 160 ~~l~~~~~~~~ 170 (199)
T 2f9l_A 160 KNILTEIYRIV 170 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 92
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=2.3e-31 Score=190.99 Aligned_cols=162 Identities=21% Similarity=0.329 Sum_probs=127.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
...+||+++|++|+|||||++++..+.+..+.++.+.... .+... ...+.+||+||++.+...+..+++++|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLE--TLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEE--EEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 5789999999999999999999998888666677765443 33333 5789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHH-----HHHcCCeEEEeeccCCCcHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIAL-----AKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~~~Sa~~~~gv~ 166 (211)
|||+++++++..+...+...+. .....++|+++|+||+|+.+... ..+.... +...+++++++||+++.|++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLD-EDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHT-CSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHh-hhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 9999999999998874444433 22346899999999999965432 2222211 12234579999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 028300 167 QCFEQLALKIMEVP 180 (211)
Q Consensus 167 ~l~~~i~~~~~~~~ 180 (211)
++|++|.+.+.+..
T Consensus 173 ~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 173 EGMDWLVERLREQG 186 (189)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887654
No 93
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.3e-30 Score=185.50 Aligned_cols=163 Identities=23% Similarity=0.339 Sum_probs=124.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
...++|+++|++|||||||+++|.++.+..+.++.+.... .+.+. ...+.+||+||++++...+..+++++|++++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE--EIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE--EEEET--TEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 5679999999999999999999998887666666665543 33333 3789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENVE 166 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~ 166 (211)
|||++++++++.+.. |...+.......+.|+++|+||+|+.+. ...++...... ..+++++++||+++.|++
T Consensus 90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (187)
T 1zj6_A 90 VVDSTDRERISVTRE-ELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 166 (187)
T ss_dssp EEETTCTTTHHHHHH-HHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred EEeCCCHHHHHHHHH-HHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence 999999999999988 5555443323468999999999999653 23344433322 235689999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 028300 167 QCFEQLALKIMEVPS 181 (211)
Q Consensus 167 ~l~~~i~~~~~~~~~ 181 (211)
++|++|.+.+.....
T Consensus 167 ~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 167 QGLEWMMSRLKIRLE 181 (187)
T ss_dssp HHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999998766554
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=5e-31 Score=188.07 Aligned_cols=160 Identities=24% Similarity=0.348 Sum_probs=124.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
...++|+++|++|||||||+++|.+..+..+.++.+.... .+.++ .+.+.+||+||++.+...+..+++.+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIK--SVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEE--EEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 5679999999999999999999998877666777775433 33444 5789999999999999889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH-----HHcCCeEEEeeccCCCcHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA-----KEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~gv~ 166 (211)
|||+++++++..+.. |...+.......++|+++|+||+|+.+... .++..... ...+++++++||++|.|++
T Consensus 90 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 90 VIDSADRKRFEETGQ-ELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEETTCGGGHHHHHH-HHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHH-HHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 999999999999887 444433222346899999999999965533 22222221 1234579999999999999
Q ss_pred HHHHHHHHHHHh
Q 028300 167 QCFEQLALKIME 178 (211)
Q Consensus 167 ~l~~~i~~~~~~ 178 (211)
++|++|.+.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 95
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=1.2e-30 Score=186.20 Aligned_cols=162 Identities=25% Similarity=0.354 Sum_probs=124.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
...++|+++|++|||||||++++.++.+..+.++.+.... .+.+. +..+.+||+||+..+...+..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE--EEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 5789999999999999999999998888667777775543 33343 3789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-----cCCeEEEeeccCCCcHH
Q 028300 92 VYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-----HGSLFLECSAKTRENVE 166 (211)
Q Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~gv~ 166 (211)
|+|++++++++.+.. |...+.......++|+++|+||+|+.+. ...++....... .+++++++||+++.|++
T Consensus 92 v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 92 VVDSTDKDRMSTASK-ELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEETTCTTTHHHHHH-HHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEECCCHHHHHHHHH-HHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 999999999999888 5554443323568999999999998654 233333332221 23479999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 028300 167 QCFEQLALKIMEVP 180 (211)
Q Consensus 167 ~l~~~i~~~~~~~~ 180 (211)
++|++|.+.+.+.+
T Consensus 169 ~l~~~l~~~~~~~q 182 (183)
T 1moz_A 169 EGLDWLIDVIKEEQ 182 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999886543
No 96
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=1.1e-28 Score=177.37 Aligned_cols=166 Identities=45% Similarity=0.750 Sum_probs=144.8
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
...+..++|+++|++|||||||++++.+..+ ..+.++.+.++....+.+++..+.+.+||++|...+...+..+++.++
T Consensus 24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~ 103 (191)
T 1oix_A 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAV 103 (191)
T ss_dssp CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence 3456789999999999999999999999887 567788888888888888998999999999999988888888899999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 167 (211)
++++|+|.++..+++++.. |...+... ...+.|+++++||+|+.+...+...+++.++...++.++++|++++.|+++
T Consensus 104 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 104 GALLVYDIAKHLTYENVER-WLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp EEEEEEETTCHHHHHTHHH-HHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHH-HHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999888776 66655443 345789999999999977667777888889988999999999999999999
Q ss_pred HHHHHHHHH
Q 028300 168 CFEQLALKI 176 (211)
Q Consensus 168 l~~~i~~~~ 176 (211)
+|++|.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998765
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=4.1e-30 Score=185.55 Aligned_cols=164 Identities=24% Similarity=0.246 Sum_probs=119.7
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceee--EEEEEEEC-CEEEEEEEEeCCChhhhccch---h
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDF--KIKLLTVA-GKRLKLTIWDTAGQERFRTLT---S 80 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~---~ 80 (211)
........+||+++|.+|||||||++++.+..... ++.+.+. ......+. +..+.+.+||++|++.|.... .
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 90 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYE 90 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHH
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcc
Confidence 44566788999999999999999999887653333 3333322 22222332 566889999999999987766 7
Q ss_pred hhccCCcEEEEEEECCCh--hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC-------cccCHHHHHHHHH---
Q 028300 81 SYYRGAQGIILVYDVTRR--ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE-------RVVSREEGIALAK--- 148 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~-------~~v~~~~~~~~~~--- 148 (211)
.+++++|++|+|||+++. +++..+.. |+..+.. ...++|+++|+||+|+.+. +.+...+...++.
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHI-TVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGL 167 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHH-HHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHH-HHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhh
Confidence 899999999999999997 56666655 5555432 2568999999999998552 3444555666776
Q ss_pred -HcCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300 149 -EHGSLFLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 149 -~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
..+++|+++||++ .|++++|.+|++.+
T Consensus 168 ~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 168 EKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 5678999999999 99999999998865
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=1.4e-28 Score=191.03 Aligned_cols=164 Identities=27% Similarity=0.523 Sum_probs=140.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
...++|+++|.+|+|||||++++..+.+ ..+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 4568999999999999999999998887 55556665444 445677888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC------------cccCHHHHHHHHHHcCC-eEEEe
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE------------RVVSREEGIALAKEHGS-LFLEC 157 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~ 157 (211)
+|||++++.+++.+...|...+... ..++|+++|+||+|+.+. +.+...+...++...++ +|+++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 9999999999999985588877765 348999999999998543 45777888888888887 89999
Q ss_pred eccCCCcHHHHHHHHHHHHHh
Q 028300 158 SAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 158 Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
||+++.|++++|++|.+.+..
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 99
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=9.2e-30 Score=181.97 Aligned_cols=164 Identities=20% Similarity=0.376 Sum_probs=120.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC--CC-CCCCCccceeeEEEEEEE---CCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS--SV-DDLSPTIGVDFKIKLLTV---AGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~--~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
.+||+++|++|||||||+++|.+. .+ ..+.++.+.++....+.. .+..+.+.+||++|++++..++..+++.+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 34 446677777766554433 235678999999999999988899999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC---HHHHHHHHHHcCCe----EEEeec
Q 028300 88 GIILVYDVTRR-ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS---REEGIALAKEHGSL----FLECSA 159 (211)
Q Consensus 88 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~---~~~~~~~~~~~~~~----~~~~Sa 159 (211)
++++|||++++ .++..+.. |+..+... ..+.|+++|+||+|+.+.+.+. ......++..++++ |+++||
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~-~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKP-WLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNA 158 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHH-HHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCT
T ss_pred EEEEEEeCCcchhHHHHHHH-HHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEec
Confidence 99999999997 47888776 77776544 3578999999999986554332 22234444456776 999999
Q ss_pred cCCC-cHHHHHHHHHHHHHhcc
Q 028300 160 KTRE-NVEQCFEQLALKIMEVP 180 (211)
Q Consensus 160 ~~~~-gv~~l~~~i~~~~~~~~ 180 (211)
+++. +++++++.|.+.+.+.+
T Consensus 159 ~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 159 TEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp TSCCHHHHHHHHHHHHHHHCC-
T ss_pred ccCchhHHHHHHHHHHHHhccc
Confidence 9997 99999999998876643
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=1e-31 Score=195.13 Aligned_cols=162 Identities=29% Similarity=0.559 Sum_probs=133.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
...+||+++|.+|+|||||+++|.++.+ ..+.++.+..+ ...+.+++..+.+.+||+||++++...+..+++++|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 5789999999999999999999998877 44455554333 334455667788899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc------------ccCHHHHHHHHHHcCC-eEEEe
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER------------VVSREEGIALAKEHGS-LFLEC 157 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~------------~v~~~~~~~~~~~~~~-~~~~~ 157 (211)
+|||++++.+++.+...|...+... ..++|+++|+||+|+.+.. .+...+...++...++ +++++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 9999999999999875587777654 2389999999999996543 4455666677777777 89999
Q ss_pred eccCCCcHHHHHHHHHHHH
Q 028300 158 SAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 158 Sa~~~~gv~~l~~~i~~~~ 176 (211)
||+++.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999998765
No 101
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=8.1e-30 Score=197.46 Aligned_cols=162 Identities=21% Similarity=0.342 Sum_probs=121.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
....+||+|+|.+|+|||||+++|.+..+....++.+..+.. +. ...+.+.||||||++.+..++..+++.+|++|
T Consensus 162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~--~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi 237 (329)
T 3o47_A 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI 237 (329)
T ss_dssp -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEE--EE--ETTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEE--Ee--cCcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 346789999999999999999999988875444555544432 22 24578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENV 165 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv 165 (211)
+|||+++++++..+...|...+... ...++|++||+||+|+.+... ..+...... ..+++++++||+++.||
T Consensus 238 lV~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi 314 (329)
T 3o47_A 238 FVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGDGL 314 (329)
T ss_dssp EEEETTCSSSHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEECCchHHHHHHHHHHHHHHhhh-ccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCcCH
Confidence 9999999999999988566655543 456899999999999965432 222222211 13457999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 028300 166 EQCFEQLALKIMEV 179 (211)
Q Consensus 166 ~~l~~~i~~~~~~~ 179 (211)
+++|++|.+.+.+.
T Consensus 315 ~el~~~l~~~l~~~ 328 (329)
T 3o47_A 315 YEGLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987653
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.96 E-value=4.2e-28 Score=177.23 Aligned_cols=162 Identities=20% Similarity=0.238 Sum_probs=116.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCE-EEEEEEEeCCChhhhcc-chhhhccCCcEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQERFRT-LTSSYYRGAQGI 89 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~~-~~~~~~~~~d~~ 89 (211)
...+||+++|++|+|||||+++|.+..+....++....... +.+.+. .+.+.+||+||+..+.. ++..+++.+|++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 46799999999999999999999999885544444444432 444443 68899999999999887 788889999999
Q ss_pred EEEEECCChh-hHHHHHHHHHHHhhhh-ccCCCccEEEEeecCCCCCCcccCH--HHHHHHHH-----------------
Q 028300 90 ILVYDVTRRE-TFTNLSDVWAKEVDLY-STNQDCVKMLVGNKVDRDSERVVSR--EEGIALAK----------------- 148 (211)
Q Consensus 90 i~v~d~~~~~-s~~~~~~~~~~~~~~~-~~~~~~p~viv~nK~Dl~~~~~v~~--~~~~~~~~----------------- 148 (211)
++|||+++.. ++......|...+... ....++|+++|+||+|+........ ........
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~ 162 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 162 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence 9999999854 4666666566665542 1345799999999999975543211 11111111
Q ss_pred ----------------Hc--CCeEEEeeccCC------CcHHHHHHHHHHH
Q 028300 149 ----------------EH--GSLFLECSAKTR------ENVEQCFEQLALK 175 (211)
Q Consensus 149 ----------------~~--~~~~~~~Sa~~~------~gv~~l~~~i~~~ 175 (211)
.+ +++|++|||++| .||+++|++|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 103
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.96 E-value=8.4e-29 Score=202.00 Aligned_cols=165 Identities=21% Similarity=0.344 Sum_probs=128.2
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
....++|+++|.+|+|||||+++|.+..+..+.+|.+..+.. +....+.+.+|||+|++.+..++..+++.+|++|
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEE----EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEE----EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 356799999999999999999999999987777777766653 3335578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH-----HcCCeEEEeeccCCCcH
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK-----EHGSLFLECSAKTRENV 165 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv 165 (211)
+|||+++++++..+...+...+... ...++|++||+||+|+.+.. ...+...... ..+++++++||++|.||
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi 471 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDR-EMRDAIILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL 471 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSG-GGTTCEEEEEEECCSSSSCC--CHHHHHHHTTCTTCCSSCEEEEECBTTTTBTH
T ss_pred EEEECcchhHHHHHHHHHHHHhhhh-hcCCCcEEEEEECCCCCcCC--CHHHHHHHhchhhhhcCCeEEEEEECCCCCCH
Confidence 9999999999999988455544432 45689999999999996543 2222222111 12346999999999999
Q ss_pred HHHHHHHHHHHHhccch
Q 028300 166 EQCFEQLALKIMEVPSL 182 (211)
Q Consensus 166 ~~l~~~i~~~~~~~~~~ 182 (211)
+++|++|.+.+.+....
T Consensus 472 ~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 472 YEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp HHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999887655443
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=4.6e-29 Score=187.02 Aligned_cols=169 Identities=21% Similarity=0.281 Sum_probs=120.6
Q ss_pred CCCCCCceeeEEEEEcCC---------CCcHHHHHHHHhhC---CC-CCCCCcc-ceeeEEEE--------------EEE
Q 028300 6 GQSNSYDLSFKILLIGDS---------GVGKSSLLVSFISS---SV-DDLSPTI-GVDFKIKL--------------LTV 57 (211)
Q Consensus 6 ~~~~~~~~~~~I~v~G~~---------~~GKssli~~l~~~---~~-~~~~~~~-~~~~~~~~--------------~~~ 57 (211)
+........+||+|+|.+ |||||||+++|.+. .+ ..+.++. +.++.... ...
T Consensus 11 ~~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~ 90 (255)
T 3c5h_A 11 RENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLE 90 (255)
T ss_dssp CTTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC----
T ss_pred cCCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeeccccccccccccccc
Confidence 344556788999999999 99999999999984 44 3444443 22211111 113
Q ss_pred CCEEEEEEEEe-----------------------CCChhhhccchhhhcc---------------------CCcEEEEEE
Q 028300 58 AGKRLKLTIWD-----------------------TAGQERFRTLTSSYYR---------------------GAQGIILVY 93 (211)
Q Consensus 58 ~~~~~~~~l~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~ 93 (211)
++..+.+.+|| ++|++.+..++..+++ ++|++|+||
T Consensus 91 ~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~ 170 (255)
T 3c5h_A 91 DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGI 170 (255)
T ss_dssp -----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEE
T ss_pred CCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEE
Confidence 45678899999 5556666666666666 799999999
Q ss_pred ECCCh--hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-cCCeEEEeeccCCCcHHHHHH
Q 028300 94 DVTRR--ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-HGSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 94 d~~~~--~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~l~~ 170 (211)
|++++ .+++.+.. |...+.......++|+++|+||+|+...+.+ ++...++.. .+++++++||+++.|++++|+
T Consensus 171 D~t~~~~~s~~~~~~-~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~ 247 (255)
T 3c5h_A 171 DVSRGMNRNFDDQLK-FVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFS 247 (255)
T ss_dssp ECBC----CHHHHHH-HHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred ECCCCchhhHHHHHH-HHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence 99998 89999887 7776654423468999999999999655444 456666665 478999999999999999999
Q ss_pred HHHHHHH
Q 028300 171 QLALKIM 177 (211)
Q Consensus 171 ~i~~~~~ 177 (211)
+|.+.+.
T Consensus 248 ~l~~~l~ 254 (255)
T 3c5h_A 248 TLVQLID 254 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9988764
No 105
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=3.1e-27 Score=167.61 Aligned_cols=162 Identities=21% Similarity=0.229 Sum_probs=118.0
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQ 87 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 87 (211)
......++|+++|++|+|||||+++|.+..+ ..+.++.+.+.....+.+.+ ..+.+||+||++.+...+...+..+|
T Consensus 3 ~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d 80 (178)
T 2lkc_A 3 HMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTD 80 (178)
T ss_dssp TTCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCC
T ss_pred CcCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCC
Confidence 3456789999999999999999999999887 34444444444444455555 35779999999999988889999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-------C--CeEEEee
Q 028300 88 GIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-------G--SLFLECS 158 (211)
Q Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-------~--~~~~~~S 158 (211)
++++|+|+++........ +...+ ...++|+++|+||+|+.+.. .++........ + ++++++|
T Consensus 81 ~~i~v~d~~~~~~~~~~~--~l~~~----~~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (178)
T 2lkc_A 81 IVILVVAADDGVMPQTVE--AINHA----KAANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLS 151 (178)
T ss_dssp EEEEEEETTCCCCHHHHH--HHHHH----GGGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred EEEEEEECCCCCcHHHHH--HHHHH----HhCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence 999999998843222222 11122 23478999999999996532 22222222221 1 4799999
Q ss_pred ccCCCcHHHHHHHHHHHHHhccc
Q 028300 159 AKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 159 a~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
|+++.|++++|++|.+.+...+.
T Consensus 152 a~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 152 AKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp SSSSHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCCHHHHHHHHHHhhhhhcc
Confidence 99999999999999998776544
No 106
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=1e-27 Score=168.43 Aligned_cols=153 Identities=20% Similarity=0.216 Sum_probs=110.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc------cchhhhcc-
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR------TLTSSYYR- 84 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~- 84 (211)
..++|+++|++|+|||||+++|.+..+ ....++.+.+.....+.+.+ ..+.+|||||+..+. .+...+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 368999999999999999999998765 33333333333333444444 578999999987764 23345554
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC
Q 028300 85 -GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163 (211)
Q Consensus 85 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (211)
++|++++|+|+++.+.. .. |...+.. .++|+++|+||+|+...+.+.. +...++..++++++++||++|.
T Consensus 80 ~~~~~~i~v~D~~~~~~~---~~-~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~ 150 (165)
T 2wji_A 80 EKPDLVVNIVDATALERN---LY-LTLQLME----MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKM 150 (165)
T ss_dssp HCCSEEEEEEETTCHHHH---HH-HHHHHHH----TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTB
T ss_pred CCCCEEEEEecCCchhHh---HH-HHHHHHh----cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCC
Confidence 89999999999986433 33 5544433 3789999999999854433332 3456677788999999999999
Q ss_pred cHHHHHHHHHHHH
Q 028300 164 NVEQCFEQLALKI 176 (211)
Q Consensus 164 gv~~l~~~i~~~~ 176 (211)
|++++|++|.+.+
T Consensus 151 ~v~~l~~~l~~~~ 163 (165)
T 2wji_A 151 GIEELKKAISIAV 163 (165)
T ss_dssp SHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998865
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=9e-28 Score=184.45 Aligned_cols=164 Identities=26% Similarity=0.372 Sum_probs=128.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCC----CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh-----ccchhhhc
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVD----DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF-----RTLTSSYY 83 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----~~~~~~~~ 83 (211)
..+||+++|.+|||||||+++++++... .+.+|.+..+.. +.+.+ .+.+.+||+||++.+ ...+..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 4689999999999999999999987432 344555554443 33333 678999999999888 67888899
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhh-ccCCCccEEEEeecCCCCC--Ccc----cCHHHHHHHHHHcC---Ce
Q 028300 84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLY-STNQDCVKMLVGNKVDRDS--ERV----VSREEGIALAKEHG---SL 153 (211)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~viv~nK~Dl~~--~~~----v~~~~~~~~~~~~~---~~ 153 (211)
+++|++|+|||+++.++++++.. |...+... ....++|+++|+||+|+.+ .+. +..+++..++..++ ++
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~-~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~ 157 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEI-FAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI 157 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHH-HHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred ccCCEEEEEEECCChhhHHHHHH-HHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence 99999999999999999999876 55444332 1256899999999999976 333 45567778888887 68
Q ss_pred EEEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300 154 FLECSAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 154 ~~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
++++||++ .++.++|..+++.+.....
T Consensus 158 ~~~tSa~~-~~i~e~~~~iv~~li~~~~ 184 (307)
T 3r7w_A 158 GFPTSIWD-ESLYKAWSQIVCSLIPNMS 184 (307)
T ss_dssp EEECCTTS-SHHHHHHHHHHHTTCSCHH
T ss_pred EEEeeecC-ChHHHHHHHHHHHHcCCHH
Confidence 99999999 8999999999887765544
No 108
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=3.2e-27 Score=181.42 Aligned_cols=174 Identities=18% Similarity=0.146 Sum_probs=133.8
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCE-EEEEEEEeCCChhhhc---------
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGK-RLKLTIWDTAGQERFR--------- 76 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~D~~g~~~~~--------- 76 (211)
.+......-.|+++|.+|||||||+|+|++..+....+..+++........... ..++.||||||+..+.
T Consensus 3 ~~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 3 HHHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp ----CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHH
Confidence 345567788999999999999999999999988666666666655444443333 6789999999975433
Q ss_pred -cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC--Ce
Q 028300 77 -TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG--SL 153 (211)
Q Consensus 77 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~ 153 (211)
......++.+|++++|+|+++..+..+... |...+.. .++|+++|+||+|+.............+...++ .+
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~-~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 157 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEI-YQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTE 157 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHH-HHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCe
Confidence 455677889999999999999877777655 6777664 378999999999997444455556666666665 78
Q ss_pred EEEeeccCCCcHHHHHHHHHHHHHhccchhcc
Q 028300 154 FLECSAKTRENVEQCFEQLALKIMEVPSLLEE 185 (211)
Q Consensus 154 ~~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~~~ 185 (211)
++++||+++.|++++|++|.+.+.+....++.
T Consensus 158 i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~ 189 (308)
T 3iev_A 158 IVPISALKGANLDELVKTILKYLPEGEPLFPE 189 (308)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSCBCCCSSCT
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCccCCCCCCc
Confidence 99999999999999999999998777655544
No 109
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=1.2e-27 Score=176.52 Aligned_cols=165 Identities=18% Similarity=0.091 Sum_probs=114.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCChh------h----hccchh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE------R----FRTLTS 80 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~------~----~~~~~~ 80 (211)
+..++|+|+|.+|||||||+++|++..+. ...+....+.....+... ...+.+||+||+. . +.. +.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTT-IT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence 56799999999999999999999988763 211111112222222222 3679999999983 2 221 23
Q ss_pred hhccCCcEEEEEEECCChhhHHHHH-HHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHH---HHHHHHHHcC--CeE
Q 028300 81 SYYRGAQGIILVYDVTRRETFTNLS-DVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSRE---EGIALAKEHG--SLF 154 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~---~~~~~~~~~~--~~~ 154 (211)
.++..+|++|+|||++++.++.... ..|...+... ..++|+++|+||+|+.+.+.+... ....++...+ +++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 4577889999999999987764221 1244444432 348999999999999776666543 3455666666 789
Q ss_pred EEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300 155 LECSAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 155 ~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
+++||+++.|++++|++|.+.+.+.+.
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999877654
No 110
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=1.2e-27 Score=172.22 Aligned_cols=160 Identities=16% Similarity=0.217 Sum_probs=111.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCC----------hhhhcc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG----------QERFRT 77 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~~ 77 (211)
......++|+++|++|+|||||+++|.+..+ ..+.++.+.+.....+..+. .+.+||+|| ++.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGR 94 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHH
Confidence 3445789999999999999999999999875 56667777666655555543 589999999 667777
Q ss_pred chhhhccCC---cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH--HHHHH-HHHHcC
Q 028300 78 LTSSYYRGA---QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR--EEGIA-LAKEHG 151 (211)
Q Consensus 78 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--~~~~~-~~~~~~ 151 (211)
++..+++.+ |++++|+|+++..++.... +...+.. .+.|+++|+||+|+.+.+.+.. ++..+ +....+
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE 168 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCC
Confidence 777777666 9999999999877766543 2222222 5789999999999976554432 22222 222235
Q ss_pred CeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300 152 SLFLECSAKTRENVEQCFEQLALKIM 177 (211)
Q Consensus 152 ~~~~~~Sa~~~~gv~~l~~~i~~~~~ 177 (211)
++++++||+++.|++++|++|.+.+.
T Consensus 169 ~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 169 DELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CceEEEEccCCCCHHHHHHHHHHHhc
Confidence 78999999999999999999988764
No 111
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=2.3e-27 Score=169.95 Aligned_cols=158 Identities=25% Similarity=0.298 Sum_probs=116.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCC-----------hhhhccchhhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG-----------QERFRTLTSSY 82 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g-----------~~~~~~~~~~~ 82 (211)
+||+++|++|||||||+++|.+..+. .+.+ +++.....+... .+.+||+|| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCC--CccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 68999999999999999999988873 3333 333333333433 689999999 56677777777
Q ss_pred ccC-CcEEEEEEECCChhhHHHHHHHHHHH--------hhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCe
Q 028300 83 YRG-AQGIILVYDVTRRETFTNLSDVWAKE--------VDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSL 153 (211)
Q Consensus 83 ~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~--------~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~ 153 (211)
++. ++++++|+++.+..++.++...|... +.......++|+++|+||+|+.... .++...++..++.+
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence 776 77777777777777887775546542 2122234689999999999986654 45566777777764
Q ss_pred -------EEEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300 154 -------FLECSAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 154 -------~~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
++++||++|.|++++|++|.+.+.+.+.
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 7999999999999999999998876554
No 112
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.94 E-value=2.2e-26 Score=165.38 Aligned_cols=163 Identities=20% Similarity=0.217 Sum_probs=118.7
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC----------hhhhc
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG----------QERFR 76 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g----------~~~~~ 76 (211)
.+.+....++|+++|++|+|||||+++|++..+....++.+++.......... .+.+||+|| ...+.
T Consensus 16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp TCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHH
T ss_pred hhCCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHH
Confidence 34455677899999999999999999999988777777777766655544433 578999999 56666
Q ss_pred cchhhhccCC---cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CHHHHHHHHHHc-
Q 028300 77 TLTSSYYRGA---QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SREEGIALAKEH- 150 (211)
Q Consensus 77 ~~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~~~~~~~~~~~- 150 (211)
.++..+++.+ |++++|+|+++..+..... +...+.. .++|+++|+||+|+.+.... ..++...++...
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKS----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHH----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 6666666655 9999999988754333221 2222222 27899999999999654332 233444555543
Q ss_pred CCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300 151 GSLFLECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 151 ~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
.++++++||+++.|++++|++|.+.+.+
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 3689999999999999999999987754
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=3.2e-27 Score=164.77 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccce--eeEEEEEEECCEEEEEEEEeCCChhh-------hccchhhhccC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGV--DFKIKLLTVAGKRLKLTIWDTAGQER-------FRTLTSSYYRG 85 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~g~~~-------~~~~~~~~~~~ 85 (211)
.||+++|++|+|||||++++.+..+....+..++ +.....+...+ ..+.+||+||... +...+...++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 5899999999999999999998876333333333 33334444444 3688999999876 33445667899
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCc
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTREN 164 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g 164 (211)
+|++++|+|+++..+... ..+...+.. .++|+++|+||+|+.+.. ++...+. .+++ +++++||+++.|
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~----~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR----KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH----HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBS
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh----cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCC
Confidence 999999999998544322 113333332 478999999999986542 2223334 5677 799999999999
Q ss_pred HHHHHHHHHHHH
Q 028300 165 VEQCFEQLALKI 176 (211)
Q Consensus 165 v~~l~~~i~~~~ 176 (211)
++++|++|.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998764
No 114
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=4.7e-28 Score=184.73 Aligned_cols=161 Identities=19% Similarity=0.210 Sum_probs=122.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCC----CCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc---chhhhccCCcE
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDD----LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT---LTSSYYRGAQG 88 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~d~ 88 (211)
||+++|..|||||||++++.+..++. ..+|.+.++.. +. ..+.+++|||+|+++|.. .+..+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887665432 45677766653 22 347899999999999964 35889999999
Q ss_pred EEEEEECCChhhHHHHHHHH---HHHhhhhccCCCccEEEEeecCCCCCC-------cccCHHHHHHHHHH----cCCeE
Q 028300 89 IILVYDVTRRETFTNLSDVW---AKEVDLYSTNQDCVKMLVGNKVDRDSE-------RVVSREEGIALAKE----HGSLF 154 (211)
Q Consensus 89 ~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~~~p~viv~nK~Dl~~~-------~~v~~~~~~~~~~~----~~~~~ 154 (211)
+|+|||+++. +.+....| +..+... .+++|+++++||+|+..+ +++..++..++++. ++++|
T Consensus 76 ~IlV~Ditd~--~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f 151 (331)
T 3r7w_B 76 LVYVIDSQDE--YINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSF 151 (331)
T ss_dssp EEEECCCSSC--TTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEE
T ss_pred EEEEEECCch--HHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceE
Confidence 9999999997 22333324 3333322 468999999999999764 34555666666664 57899
Q ss_pred EEeeccCCCcHHHHHHHHHHHHHhccchhccc
Q 028300 155 LECSAKTRENVEQCFEQLALKIMEVPSLLEEG 186 (211)
Q Consensus 155 ~~~Sa~~~~gv~~l~~~i~~~~~~~~~~~~~~ 186 (211)
++|||++ .+|.++|..|++.+.++....++.
T Consensus 152 ~eTSAkd-~nV~eAFs~iv~~li~~~~~le~~ 182 (331)
T 3r7w_B 152 YLTSIFD-HSIYEAFSRIVQKLIPELSFLENM 182 (331)
T ss_dssp ECCCSSS-SHHHHHHHHHHTTSSTTHHHHHHH
T ss_pred EEeccCC-CcHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999998 589999999999888877666555
No 115
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.6e-26 Score=165.40 Aligned_cols=157 Identities=19% Similarity=0.201 Sum_probs=116.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc------cchhhhcc-
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR------TLTSSYYR- 84 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~- 84 (211)
..++|+++|++|||||||+++|.+..+ ....++...+.....+...+ ..+.+||+||+..+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 679999999999999999999998765 33334444444444445443 678999999987764 23455554
Q ss_pred -CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC
Q 028300 85 -GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163 (211)
Q Consensus 85 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (211)
.+|++++|+|.++. +.... |...+.. .+.|+++|+||+|+.....+. .....++..++++++++||+++.
T Consensus 84 ~~~~~~i~v~d~~~~---~~~~~-~~~~~~~----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~ 154 (188)
T 2wjg_A 84 EKPDLVVNIVDATAL---ERNLY-LTLQLME----MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKM 154 (188)
T ss_dssp HCCSEEEEEEEGGGH---HHHHH-HHHHHHT----TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTB
T ss_pred cCCCEEEEEecchhH---HHHHH-HHHHHHh----cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCC
Confidence 58999999998864 44444 5555443 478999999999985443333 24566677788999999999999
Q ss_pred cHHHHHHHHHHHHHhcc
Q 028300 164 NVEQCFEQLALKIMEVP 180 (211)
Q Consensus 164 gv~~l~~~i~~~~~~~~ 180 (211)
|++++|++|.+.+.+..
T Consensus 155 ~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 155 GIEELKKAISIAVKDKK 171 (188)
T ss_dssp SHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999887765
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=9.9e-27 Score=174.36 Aligned_cols=156 Identities=21% Similarity=0.156 Sum_probs=115.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc------hhhhc--
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL------TSSYY-- 83 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~------~~~~~-- 83 (211)
.+.++|+++|++|+|||||+++|.+..+. ....++++.......+......+.+||+||...+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQY-VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEE-EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 46799999999999999999999987762 1122344444444444333478999999998776542 24444
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC
Q 028300 84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163 (211)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (211)
..+|++++|+|+++.++... |...+.. .++|+++|+||+|+...+.+.. +...+...++++++++||+++.
T Consensus 82 ~~~d~ii~V~D~t~~~~~~~----~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~ 152 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSLY----LLLEILE----MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGE 152 (258)
T ss_dssp SCCSEEEEEEETTSCHHHHH----HHHHHHT----TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCT
T ss_pred cCCCEEEEEeCCCchhhHHH----HHHHHHh----cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCc
Confidence 58999999999998754332 3333332 3799999999999854444332 3566777889999999999999
Q ss_pred cHHHHHHHHHHHHH
Q 028300 164 NVEQCFEQLALKIM 177 (211)
Q Consensus 164 gv~~l~~~i~~~~~ 177 (211)
|++++|++|.+.+.
T Consensus 153 gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 153 GLEELKEKIVEYAQ 166 (258)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998765
No 117
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.94 E-value=3.3e-27 Score=166.96 Aligned_cols=154 Identities=21% Similarity=0.234 Sum_probs=108.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccc--eeeEEEEEEECCEEEEEEEEeCCChhhhccc--------hhhh
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIG--VDFKIKLLTVAGKRLKLTIWDTAGQERFRTL--------TSSY 82 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~--------~~~~ 82 (211)
..++|+++|++|+|||||+++|.+..+....+..+ .++....+.+++. .+.+||+||+.++... ....
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 45799999999999999999999876532222233 3344445556553 4789999997543211 1235
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCC
Q 028300 83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTR 162 (211)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (211)
++.+|++++|||+++..+++.. . |...+... ...++|+++|+||+|+.+... .++...+.+++++||+++
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~~-~-~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g 150 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDPA-E-IWPEFIAR-LPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTG 150 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSHH-H-HCHHHHHH-SCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTC
T ss_pred HHhCCEEEEEEECCCCCCHHHH-H-HHHHHHHh-cccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCC
Confidence 7899999999999998876533 3 55555443 345799999999999843211 011124568999999999
Q ss_pred CcHHHHHHHHHHHHHh
Q 028300 163 ENVEQCFEQLALKIME 178 (211)
Q Consensus 163 ~gv~~l~~~i~~~~~~ 178 (211)
.|++++|++|.+.+..
T Consensus 151 ~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 151 EGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TTHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHhhh
Confidence 9999999999887643
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=1.1e-26 Score=190.97 Aligned_cols=166 Identities=22% Similarity=0.287 Sum_probs=125.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEE------EEE--CCEEEEEEEEeCCChhhhccchh
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKL------LTV--AGKRLKLTIWDTAGQERFRTLTS 80 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~------~~~--~~~~~~~~l~D~~g~~~~~~~~~ 80 (211)
.....+||+++|.+|||||||++++.+..+ ..+.++.+.++.... +.+ .+..+.+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 356789999999999999999999999887 566677776665432 111 23357899999999999999999
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300 81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK 160 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 160 (211)
.+++++|++|+|+|+++.+. ... |...+..+ ..+.|+++|+||+|+.+.+.+..++...++...+++++++||+
T Consensus 117 ~~l~~~d~ii~V~D~s~~~~---~~~-~~~~l~~~--~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~ 190 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTDSN---KHY-WLRHIEKY--GGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCK 190 (535)
T ss_dssp HHHHSSEEEEEEECGGGGGG---HHH-HHHHHHHH--SSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-
T ss_pred HHccCCcEEEEEEeCCCchh---HHH-HHHHHHHh--CCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecC
Confidence 99999999999999987643 333 77777665 3479999999999998877788888888888888999999999
Q ss_pred CCCcHHHHHHHHHHHHHhccc
Q 028300 161 TRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~~~~~~ 181 (211)
++.|++++|++|.+.+.+...
T Consensus 191 ~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 191 NGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp ----CTTHHHHHHHHHTCTTS
T ss_pred cccCHHHHHHHHHHHHhcccc
Confidence 999999999999998877654
No 119
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.93 E-value=6.6e-26 Score=166.52 Aligned_cols=166 Identities=17% Similarity=0.102 Sum_probs=115.7
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEEC-CEEEEEEEEeCCCh----------hhhc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVA-GKRLKLTIWDTAGQ----------ERFR 76 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~----------~~~~ 76 (211)
......++|+|+|.+|+|||||+++|++..+ .......+++......... .....+.||||||. +.+.
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 3445678999999999999999999999873 4555666666655555554 44567899999994 3444
Q ss_pred cchhhhccC---CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH--HHHHHHHHH--
Q 028300 77 TLTSSYYRG---AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR--EEGIALAKE-- 149 (211)
Q Consensus 77 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--~~~~~~~~~-- 149 (211)
.....++.. +|++++|+|+++..+... ..|...+.. .++|+++|+||+|+........ .........
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~ 177 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR 177 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence 455555554 788999999987543222 224444443 4789999999999865443221 122222222
Q ss_pred -----cCCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 150 -----HGSLFLECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 150 -----~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
.+.+++++||+++.|++++|++|.+.+....
T Consensus 178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 178 DAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred hcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4568999999999999999999998876553
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.93 E-value=2.8e-26 Score=172.87 Aligned_cols=155 Identities=21% Similarity=0.137 Sum_probs=115.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc------cchhhhcc--
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR------TLTSSYYR-- 84 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~------~~~~~~~~-- 84 (211)
..++|+++|++|+|||||+++|.+.... ....+|+++......+.. ...+.+||+||...+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQR-VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCC-CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCc-ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 4589999999999999999999987531 222346666555556666 6789999999987765 33455554
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCc
Q 028300 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTREN 164 (211)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (211)
.+|++++|+|+++.++.. . |...+.. .++|+++|+||+|+.....+. .....+...++++++++||++|.|
T Consensus 80 ~~d~vi~V~D~t~~e~~~---~-~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~g 150 (272)
T 3b1v_A 80 RADSILNVVDATNLERNL---Y-LTTQLIE----TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTG 150 (272)
T ss_dssp CCSEEEEEEEGGGHHHHH---H-HHHHHHH----TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred CCCEEEEEecCCchHhHH---H-HHHHHHh----cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence 699999999999865432 2 4444432 489999999999985443333 234567777899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 028300 165 VEQCFEQLALKIME 178 (211)
Q Consensus 165 v~~l~~~i~~~~~~ 178 (211)
++++|++|.+.+..
T Consensus 151 i~el~~~i~~~~~~ 164 (272)
T 3b1v_A 151 VDQVVKKAAHTTTS 164 (272)
T ss_dssp HHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999886543
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=1.8e-25 Score=167.33 Aligned_cols=150 Identities=18% Similarity=0.150 Sum_probs=109.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc----------chhhhc
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT----------LTSSYY 83 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----------~~~~~~ 83 (211)
.+|+++|.+|+|||||+|+|.+..+ ....+....+.....+...+ ..+.+||+||...+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999998765 22333333334444445444 4789999999876653 345566
Q ss_pred --cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300 84 --RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT 161 (211)
Q Consensus 84 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 161 (211)
.++|++|+|+|+++.++...+.. .+. ..++|+++|+||+|+.....+.. ....+...++++++++||++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~----~l~----~~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~ 150 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTS----QLF----ELGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHK 150 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHH----HHT----TSCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGG
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHH----HHH----HcCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCC
Confidence 89999999999998655444322 222 23899999999999854333221 13446667899999999999
Q ss_pred CCcHHHHHHHHHHH
Q 028300 162 RENVEQCFEQLALK 175 (211)
Q Consensus 162 ~~gv~~l~~~i~~~ 175 (211)
|.|++++|++|.+.
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999876
No 122
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.92 E-value=3.6e-25 Score=169.19 Aligned_cols=164 Identities=20% Similarity=0.186 Sum_probs=115.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh--------hccchhhhc
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER--------FRTLTSSYY 83 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--------~~~~~~~~~ 83 (211)
-+..+|+++|.+|+|||||+|+|++..+....+.++++.............++.||||||... +.......+
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 356789999999999999999999988755444444443332222223457899999999765 344556788
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH-cC-CeEEEeeccC
Q 028300 84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE-HG-SLFLECSAKT 161 (211)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~-~~-~~~~~~Sa~~ 161 (211)
+.+|++++|+|+++..+... ..+...+... ..+.|+++|+||+|+...... ....... .+ .+++++||++
T Consensus 85 ~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~~ 156 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPED--ELVARALKPL--VGKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSALD 156 (301)
T ss_dssp SSCSEEEEEEETTSCCCHHH--HHHHHHHGGG--TTTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTTC
T ss_pred hcCCEEEEEEECCCCCChHH--HHHHHHHHhh--cCCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCCC
Confidence 99999999999998654432 2233444433 247999999999998654330 1222222 23 4799999999
Q ss_pred CCcHHHHHHHHHHHHHhccchh
Q 028300 162 RENVEQCFEQLALKIMEVPSLL 183 (211)
Q Consensus 162 ~~gv~~l~~~i~~~~~~~~~~~ 183 (211)
+.|++++|++|.+.+.+....+
T Consensus 157 g~gv~~l~~~l~~~l~~~~~~y 178 (301)
T 1wf3_A 157 ERQVAELKADLLALMPEGPFFY 178 (301)
T ss_dssp HHHHHHHHHHHHTTCCBCCCSS
T ss_pred CCCHHHHHHHHHHhcccCCCCC
Confidence 9999999999998776554444
No 123
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=5.5e-26 Score=171.85 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=111.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccc----------hhhh
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL----------TSSY 82 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~----------~~~~ 82 (211)
..++|+++|.+|+|||||+|+|.+..+ .....++++.......+......+.+||+||...+... ...+
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCE-EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 368999999999999999999998875 22223344444434333333456889999998766521 2222
Q ss_pred --ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300 83 --YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK 160 (211)
Q Consensus 83 --~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 160 (211)
.+.+|++++|+|+++.+....+ ...+... ++|+++|+||+|+.+...+.. ....+...++++++++||+
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~----~~~l~~~----~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~ 151 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYL----TLQLLEL----GIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVST 151 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHH----HHHHHHH----TCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCG
T ss_pred HhhcCCCEEEEEecCCChHHHHHH----HHHHHhc----CCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcC
Confidence 2799999999999986554333 3333332 799999999999854333221 2345667788999999999
Q ss_pred CCCcHHHHHHHHHHHHHhc
Q 028300 161 TRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~~~~ 179 (211)
+|.|++++|++|.+.+...
T Consensus 152 ~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 152 RGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp GGHHHHHHHHHHHTCCCCC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999998866543
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=2.7e-25 Score=168.02 Aligned_cols=158 Identities=19% Similarity=0.145 Sum_probs=113.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc------chhhhc--
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT------LTSSYY-- 83 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------~~~~~~-- 83 (211)
..++|+++|++|+|||||+++|.+..+ ....+..+.+.....+...+ ..+.+||+||...+.. ....++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 358999999999999999999998876 22333333444444444444 4589999999877655 344555
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCC
Q 028300 84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRE 163 (211)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~ 163 (211)
.++|++++|+|+++.+ .... |...+... ..+|+++|+||+|+.+...+... ...+...++++++++||+++.
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~-~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~ 151 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLF-LTLELFEM---EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGE 151 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHH-HHHHHHHT---TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTB
T ss_pred cCCcEEEEEecCCcch---hhHH-HHHHHHhc---CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCC
Confidence 6899999999999853 2233 22222222 23999999999997543333222 556677789999999999999
Q ss_pred cHHHHHHHHHHHHHhcc
Q 028300 164 NVEQCFEQLALKIMEVP 180 (211)
Q Consensus 164 gv~~l~~~i~~~~~~~~ 180 (211)
|++++|+++.+.+....
T Consensus 152 gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 152 GVEELKRMIALMAEGKV 168 (271)
T ss_dssp THHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999999876543
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=6.5e-25 Score=176.87 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=97.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEE--EEEEECCEEEEEEEEeCCChhhhccch--------hh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKI--KLLTVAGKRLKLTIWDTAGQERFRTLT--------SS 81 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~ 81 (211)
...++|+++|.+|+|||||+|+|.+.+.....+.++++... ..+.+. +..+.+|||||+..+...+ ..
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~--g~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD--KTMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEET--TEEEEEEC--------------------C
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC--CeEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 35689999999999999999999988654444445554443 334444 3679999999987655433 34
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300 82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT 161 (211)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 161 (211)
.++.+|++++|+|++++.+++.... +...+... .++|+++|+||+|+........ ..+......+++++||++
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~~---~~l~~~~~~~~i~vSAkt 381 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTE-IRELKAAH---PAAKFLTVANKLDRAANADALI---RAIADGTGTEVIGISALN 381 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHC---TTSEEEEEEECTTSCTTTHHHH---HHHHHHHTSCEEECBTTT
T ss_pred hcccCCEEEEEEECCCCcchhhhHH-HHHHHHhc---CCCCEEEEEECcCCCCccchhH---HHHHhcCCCceEEEEECC
Confidence 6789999999999999877654322 33333322 2789999999999976654422 223333236899999999
Q ss_pred CCcHHHHHHHHHHHHH
Q 028300 162 RENVEQCFEQLALKIM 177 (211)
Q Consensus 162 ~~gv~~l~~~i~~~~~ 177 (211)
+.|++++|++|.+.+.
T Consensus 382 g~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 382 GDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TBSHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999999887
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.92 E-value=2.4e-25 Score=178.67 Aligned_cols=161 Identities=19% Similarity=0.139 Sum_probs=114.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEE--EEEEECCEEEEEEEEeCCCh----------hhhccch
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKI--KLLTVAGKRLKLTIWDTAGQ----------ERFRTLT 79 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~----------~~~~~~~ 79 (211)
+..++|+++|.+|+|||||+|+|++..+....+..+++... ..+..++ ..+.||||||+ +.|....
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHH
Confidence 45799999999999999999999988764333344444433 2334444 35899999997 3343332
Q ss_pred h-hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHH-HHH----cCCe
Q 028300 80 S-SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIAL-AKE----HGSL 153 (211)
Q Consensus 80 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~-~~~----~~~~ 153 (211)
. ..++.+|++++|+|+++..+..+.. |...+.. .++|+++|+||+|+.+.+.+..++.... ... .+++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~~--~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~ 324 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDKR--IAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP 324 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHHH--HHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCC
Confidence 2 4778899999999999988877653 5555442 4799999999999976655443333222 222 3679
Q ss_pred EEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 154 FLECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 154 ~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
++++||++|.|++++|+++.+.+.+..
T Consensus 325 ~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 325 ILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred EEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999998887654
No 127
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=7.8e-25 Score=176.61 Aligned_cols=163 Identities=20% Similarity=0.154 Sum_probs=117.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeE--EEEEEECCEEEEEEEEeCCC----------hhhhccc
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFK--IKLLTVAGKRLKLTIWDTAG----------QERFRTL 78 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g----------~~~~~~~ 78 (211)
.+..++|+++|.+|+|||||+++|.+.......+..+++.. ...+...+. .+.+||||| ++.+...
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 45679999999999999999999997764322333333332 233444443 789999999 5555554
Q ss_pred hh-hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHc-----CC
Q 028300 79 TS-SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEH-----GS 152 (211)
Q Consensus 79 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~-----~~ 152 (211)
.. .+++.+|++|+|+|+++...... ..|...+.. .++|+++|+||+|+.+.+.+..++..+.+... .+
T Consensus 270 ~~~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYA 343 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTS
T ss_pred HHHHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCC
Confidence 43 37789999999999998543222 225544443 47999999999999877666666666666553 57
Q ss_pred eEEEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300 153 LFLECSAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 153 ~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
+++++||++|.|++++|+++.+.+.+...
T Consensus 344 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 344 PILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp CEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred CEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999998866653
No 128
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=5.1e-25 Score=161.26 Aligned_cols=151 Identities=19% Similarity=0.202 Sum_probs=102.7
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC---
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG--- 85 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~--- 85 (211)
......++|+++|++|+|||||+++|.+..+.........+. ........+.+||+||++.+...+..++..
T Consensus 7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEE-----ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceE-----EEEeeCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 345678999999999999999999999988743211111111 111144578999999999998888888777
Q ss_pred -CcEEEEEEECC-ChhhHHHHHHHHHHHhhhhc--cCCCccEEEEeecCCCCCCcccC------HHHHHHHHHHcCCeEE
Q 028300 86 -AQGIILVYDVT-RRETFTNLSDVWAKEVDLYS--TNQDCVKMLVGNKVDRDSERVVS------REEGIALAKEHGSLFL 155 (211)
Q Consensus 86 -~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~--~~~~~p~viv~nK~Dl~~~~~v~------~~~~~~~~~~~~~~~~ 155 (211)
+|++|+|+|++ +++++......+...+.... ...++|+++|+||+|+.....+. ..+...+....+++|+
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 161 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLN 161 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999 88888888874444433221 24689999999999997765543 3445556666677899
Q ss_pred EeeccCCCc
Q 028300 156 ECSAKTREN 164 (211)
Q Consensus 156 ~~Sa~~~~g 164 (211)
++|++++.+
T Consensus 162 ~~Sa~~~~~ 170 (218)
T 1nrj_B 162 EVERKINEE 170 (218)
T ss_dssp C--------
T ss_pred ccccccccc
Confidence 999998865
No 129
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.90 E-value=1.4e-23 Score=160.57 Aligned_cols=165 Identities=20% Similarity=0.126 Sum_probs=112.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh---------hhccchhhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE---------RFRTLTSSY 82 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~ 82 (211)
-+..+|+++|++|+|||||+|+|++..+....+.++++.......+......+.+|||||+. .+.......
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 35568999999999999999999988764333333333322222222234678999999986 233445677
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccC
Q 028300 83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKT 161 (211)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 161 (211)
++.+|++++|+|+++ -+ .....+...+. ..+.|+++++||+|+.............+...+++ .++++||++
T Consensus 86 l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~----~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~ 158 (301)
T 1ega_A 86 IGDVELVIFVVEGTR-WT--PDDEMVLNKLR----EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET 158 (301)
T ss_dssp CCCEEEEEEEEETTC-CC--HHHHHHHHHHH----SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred HhcCCEEEEEEeCCC-CC--HHHHHHHHHHH----hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence 889999999999977 22 22221222222 35789999999999865222222334444444565 699999999
Q ss_pred CCcHHHHHHHHHHHHHhccchh
Q 028300 162 RENVEQCFEQLALKIMEVPSLL 183 (211)
Q Consensus 162 ~~gv~~l~~~i~~~~~~~~~~~ 183 (211)
+.|+++++++|.+.+.+....+
T Consensus 159 g~~v~~l~~~i~~~l~~~~~~~ 180 (301)
T 1ega_A 159 GLNVDTIAAIVRKHLPEATHHF 180 (301)
T ss_dssp TTTHHHHHHHHHTTCCBCCCSS
T ss_pred CCCHHHHHHHHHHhCCcCCCCC
Confidence 9999999999998776554433
No 130
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=2.9e-23 Score=162.54 Aligned_cols=162 Identities=18% Similarity=0.161 Sum_probs=115.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc---------cchhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR---------TLTSS 81 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------~~~~~ 81 (211)
...++|+++|.+|||||||+++|.+..+. ...+..........+... ...+.+|||||..... .....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 46789999999999999999999987651 111111112222222222 4578999999974421 11223
Q ss_pred hccCCcEEEEEEECCChh--hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec
Q 028300 82 YYRGAQGIILVYDVTRRE--TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA 159 (211)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 159 (211)
....+|++++|+|+++.. +++.... |...+.... .++|+++|+||+|+.....+ ++...++...+++++++||
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~-~~~~i~~~~--~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA 317 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIH-LFEEVHGEF--KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISA 317 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHH-HHHHHHHHT--TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBT
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHH-HHHHHHHhc--CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeC
Confidence 445789999999999876 6676666 666665432 28999999999999655433 3455566677889999999
Q ss_pred cCCCcHHHHHHHHHHHHHhcc
Q 028300 160 KTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 160 ~~~~gv~~l~~~i~~~~~~~~ 180 (211)
++|.|++++|++|.+.+....
T Consensus 318 ~~g~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 318 LKGTGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp TTTBTHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999886653
No 131
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.90 E-value=5.5e-24 Score=171.60 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=111.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceee--EEEEEEECCEEEEEEEEeCCChh-hhcc--------chhh
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDF--KIKLLTVAGKRLKLTIWDTAGQE-RFRT--------LTSS 81 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~-~~~~--------~~~~ 81 (211)
..++|+++|.+|+|||||+|+|.+.++....+.++++. ....+.+++ ..+.+|||||.. ++.. ....
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 34899999999999999999999887543333344333 333444544 568999999987 5432 2345
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300 82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT 161 (211)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 161 (211)
.++.+|++|+|+|++++.++++.. +...+ .++|+++|+||+|+.+. +..++...+. ..+.+++++||++
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~--il~~l------~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAkt 388 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRK--ILERI------KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALK 388 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHH--HHHHH------TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGG
T ss_pred HhhcccEEEEEecCCCCCCHHHHH--HHHHh------cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCC
Confidence 788999999999999887776543 22222 37899999999999653 3434444332 2346899999999
Q ss_pred CCcHHHHHHHHHHHHHh
Q 028300 162 RENVEQCFEQLALKIME 178 (211)
Q Consensus 162 ~~gv~~l~~~i~~~~~~ 178 (211)
+.|+++++++|.+.+..
T Consensus 389 g~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 389 GEGLEKLEESIYRETQE 405 (482)
T ss_dssp TCCHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999997663
No 132
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.90 E-value=4.4e-23 Score=153.11 Aligned_cols=167 Identities=15% Similarity=0.185 Sum_probs=104.4
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccce--eeEEEEEEECCEEEEEEEEeCCCh-----------hh
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGV--DFKIKLLTVAGKRLKLTIWDTAGQ-----------ER 74 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~g~-----------~~ 74 (211)
......++|+++|++|+|||||+++|++..+ ....+..++ ......+.+.+ ..+.||||||. ..
T Consensus 24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHH
Confidence 3446789999999999999999999998877 333332222 23333334443 56899999993 23
Q ss_pred hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhh-hhccCCCccEEEEeecCCCCCCcccC------HHHHHHHH
Q 028300 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVD-LYSTNQDCVKMLVGNKVDRDSERVVS------REEGIALA 147 (211)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~p~viv~nK~Dl~~~~~v~------~~~~~~~~ 147 (211)
+...+...++.+|++|+|+|+++..... . . +...+. .+......|+++|+||+|+.....+. .+....+.
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~-~-~-~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~ 178 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYTEEE-H-K-ATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLM 178 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCSSHH-H-H-HHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCCHHH-H-H-HHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHH
Confidence 4444555667889999999987644311 1 1 222221 11112346999999999986554433 13456677
Q ss_pred HHcCCeEEEeeccCC-----CcHHHHHHHHHHHHHhcc
Q 028300 148 KEHGSLFLECSAKTR-----ENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 148 ~~~~~~~~~~Sa~~~-----~gv~~l~~~i~~~~~~~~ 180 (211)
...+..|+.++...+ .++.++|..+.+.+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~ 216 (239)
T 3lxx_A 179 DIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENK 216 (239)
T ss_dssp HHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 778888888876643 789999999888776643
No 133
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.90 E-value=3e-25 Score=176.09 Aligned_cols=159 Identities=20% Similarity=0.149 Sum_probs=111.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccce--eeEEEEEEECCEEEEEEEEeCCChhhhccc-------hh
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGV--DFKIKLLTVAGKRLKLTIWDTAGQERFRTL-------TS 80 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------~~ 80 (211)
.....++|+|+|.+|+|||||+++|++..+.......++ +.....+.+... ..+.+|||||+.++..+ ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHH
Confidence 345678999999999999999999998876433333343 333334444433 27899999998876544 34
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeecc
Q 028300 81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAK 160 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 160 (211)
.++.++|++|+|+|++..... .. |...+... ++|+++|+||+|+...+.. +....+...++++++++||+
T Consensus 109 ~~l~~aD~vllVvD~~~~~~~---~~-~l~~l~~~----~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAk 178 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAPTPYE---DD-VVNLFKEM----EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSAL 178 (423)
T ss_dssp HHHTSCSEEEEECSSSCCHHH---HH-HHHHHHHT----TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSC
T ss_pred HHHhcCCEEEEEEeCCChHHH---HH-HHHHHHhc----CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECC
Confidence 578899999999999433222 22 55555543 8999999999999766544 44455555678899999999
Q ss_pred CCCcHHHHHHHHHHHHHhc
Q 028300 161 TRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~~~~ 179 (211)
++.|++++|++|.+.+.+.
T Consensus 179 tg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CTTSTTTHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHhhhhh
Confidence 9999999999999988554
No 134
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=1.7e-23 Score=168.10 Aligned_cols=153 Identities=24% Similarity=0.245 Sum_probs=100.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeE--EEEEEECCEEEEEEEEeCCChhh---------hccchhhhc
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFK--IKLLTVAGKRLKLTIWDTAGQER---------FRTLTSSYY 83 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~D~~g~~~---------~~~~~~~~~ 83 (211)
.+|+++|.||||||||+|+|.+........+++++.. ...+.+.+ ..+.+|||||... +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG--KTFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT--EEEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC--eEEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 3799999999999999999998876544555565443 33444444 4578999999653 234456688
Q ss_pred cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHH-HHHHHHcCC-eEEEeeccC
Q 028300 84 RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEG-IALAKEHGS-LFLECSAKT 161 (211)
Q Consensus 84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~-~~~~~~~~~-~~~~~Sa~~ 161 (211)
+.+|++++|+|+++..+..+.. +...+.. .++|+++|+||+|+... . ..+. .++. .++. +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~--i~~~l~~----~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDES--LADFLRK----STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHH--HHHHHHH----HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHHH--HHHHHHH----cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 9999999999998754433311 2222332 37899999999997422 1 1222 2332 4566 689999999
Q ss_pred CCcHHHHHHHHHHHHHhc
Q 028300 162 RENVEQCFEQLALKIMEV 179 (211)
Q Consensus 162 ~~gv~~l~~~i~~~~~~~ 179 (211)
|.|+++++++|.+.+.+.
T Consensus 150 g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEK 167 (439)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcccc
Confidence 999999999999988653
No 135
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.89 E-value=1.2e-23 Score=162.88 Aligned_cols=158 Identities=22% Similarity=0.276 Sum_probs=114.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC--CCCC-CccceeeEEEEEEECCEEEEEEEEeCCChhh----hccchhhhcc---C
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV--DDLS-PTIGVDFKIKLLTVAGKRLKLTIWDTAGQER----FRTLTSSYYR---G 85 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~~~~---~ 85 (211)
+|+|+|.+|||||||+++|++... ..+. .|...+.. .+.+.+ ...+.+||+||..+ +..+...+++ .
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--MVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE--EEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE--EEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 588999999999999999998764 2221 22222222 233332 24789999999643 3334455544 5
Q ss_pred CcEEEEEEECCC---hhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC--CeEEEeec
Q 028300 86 AQGIILVYDVTR---RETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG--SLFLECSA 159 (211)
Q Consensus 86 ~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa 159 (211)
+|++|+|+|+++ .++++++.. |...+..+.. ..++|+++|+||+|+.... +....+...+. .+++++||
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~-~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA 311 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLT-INQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISA 311 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHH-HHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSS
T ss_pred ccEEEEEEECCcccccChHHHHHH-HHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEEC
Confidence 999999999998 778888876 7777776522 3589999999999986432 23445555555 68999999
Q ss_pred cCCCcHHHHHHHHHHHHHhccc
Q 028300 160 KTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 160 ~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
+++.|+++++.+|.+.+.+.+.
T Consensus 312 ~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 312 VTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CCSSTTHHHHHHHHHHHTSCCC
T ss_pred CCCcCHHHHHHHHHHHHhhCcc
Confidence 9999999999999998876543
No 136
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=3.6e-24 Score=171.82 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=104.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh--------hhccchhhhccC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE--------RFRTLTSSYYRG 85 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~~~~~~~ 85 (211)
..+|+++|.+|||||||+|+|.+..+..+.+++|+++..........+..+.+|||||+. .+...+..+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 368999999999999999999988877777888888776666666666789999999975 455667778899
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeeccCCCc
Q 028300 86 AQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAKTREN 164 (211)
Q Consensus 86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~g 164 (211)
+|++|+|+|+.+..+..+.. +...+. ..++|+++|+||+|+...... ..++. .++. +++++||++|.|
T Consensus 83 ad~il~vvD~~~~~~~~d~~--~~~~l~----~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAADEE--VAKILY----RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp CSEEEEEEETTTCSCHHHHH--HHHHHT----TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBT
T ss_pred CCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCC
Confidence 99999999999866544321 334343 358899999999998643211 11122 3454 689999999999
Q ss_pred HHHHHHHHHHHHHhc
Q 028300 165 VEQCFEQLALKIMEV 179 (211)
Q Consensus 165 v~~l~~~i~~~~~~~ 179 (211)
++++++++.+.+.+.
T Consensus 152 v~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 152 LGDLLDAVAEHFKNI 166 (436)
T ss_dssp HHHHHHHHHHTGGGC
T ss_pred hHHHHHHHHHhcCcc
Confidence 999999999887643
No 137
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.89 E-value=4.3e-23 Score=160.39 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=96.3
Q ss_pred EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHhhhhccCCCccEEEEeecC
Q 028300 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTR----------RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~ 130 (211)
.+.+.+||++|+..++..|..++++++++|+|||+++ .+++.+... |...+.......++|+++++||+
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~-~~~~i~~~~~~~~~piiLv~NK~ 270 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMK-LFDSICNNKWFTDTSIILFLNKK 270 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHH-HHHHHHTCGGGTTSEEEEEEECH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHH-HHHHHHcCccccCCcEEEEEECc
Confidence 5789999999999999999999999999999999999 567888888 44444333234679999999999
Q ss_pred CCCCCc---------------ccCHHHHHHHHH-----------HcCCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300 131 DRDSER---------------VVSREEGIALAK-----------EHGSLFLECSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 131 Dl~~~~---------------~v~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
|+...+ .+..+++..++. ..++.+++|||+++.||+++|+++.+.+...
T Consensus 271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 984322 356677777776 3467899999999999999999999988654
No 138
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.89 E-value=1.8e-22 Score=160.38 Aligned_cols=166 Identities=15% Similarity=0.088 Sum_probs=114.5
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEE-------EE------------EECCEEEEEEEEeCC
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIK-------LL------------TVAGKRLKLTIWDTA 70 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~-------~~------------~~~~~~~~~~l~D~~ 70 (211)
.....++|+++|++++|||||+++|.+............+.... .+ ........+.|||+|
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 45668999999999999999999999754322111100000000 00 001133789999999
Q ss_pred ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC--HHHHHHHHH
Q 028300 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS--REEGIALAK 148 (211)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~--~~~~~~~~~ 148 (211)
|+..|.......+..+|++++|+|+++..++..... +...+... ...|+++|+||+|+.+..... .++...+..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~-~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~ 159 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTRE-HFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHH-HHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHH-HHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence 999998888889999999999999998765666655 44444433 235899999999986543221 112222222
Q ss_pred H---cCCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300 149 E---HGSLFLECSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 149 ~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
. .+++++++||++|.|+++++++|.+.+...
T Consensus 160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 160 GTWAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred hhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 2 156899999999999999999998876543
No 139
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=2.2e-22 Score=162.86 Aligned_cols=158 Identities=16% Similarity=0.150 Sum_probs=110.3
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCC----CCC--CCCccceeeEE--EEEEECCEEEEEEEEeCCChhhhccchh
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSS----VDD--LSPTIGVDFKI--KLLTVAGKRLKLTIWDTAGQERFRTLTS 80 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~----~~~--~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 80 (211)
......++|+++|++++|||||+++|.+.. .+. .....+.+... ..+..+ ...+.|||+||+++|.....
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~ 91 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVV 91 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TEEEEECCCSSHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CEEEEEEECCChHHHHHHHH
Confidence 334567999999999999999999999876 211 11112222211 122333 36799999999999988888
Q ss_pred hhccCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CHHHHHHHHHHc----C
Q 028300 81 SYYRGAQGIILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SREEGIALAKEH----G 151 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~~~~~~~~~~~----~ 151 (211)
..+..+|++|+|+|+++ +++.+.+. .+. ..++|.++|+||+|+.+.... ..++...++... +
T Consensus 92 ~~~~~aD~~ilVvda~~g~~~qt~e~l~-----~~~----~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~ 162 (482)
T 1wb1_A 92 SAADIIDLALIVVDAKEGPKTQTGEHML-----ILD----HFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKN 162 (482)
T ss_dssp HHTTSCCEEEEEEETTTCSCHHHHHHHH-----HHH----HTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGG
T ss_pred HHHhhCCEEEEEEecCCCccHHHHHHHH-----HHH----HcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhccccc
Confidence 89999999999999998 44444433 222 236888999999999653221 123344444444 5
Q ss_pred CeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300 152 SLFLECSAKTRENVEQCFEQLALKIM 177 (211)
Q Consensus 152 ~~~~~~Sa~~~~gv~~l~~~i~~~~~ 177 (211)
++++++||++|.|+++++++|.+.+.
T Consensus 163 ~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 163 SSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 78999999999999999999998775
No 140
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=1e-21 Score=157.38 Aligned_cols=157 Identities=18% Similarity=0.212 Sum_probs=106.7
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCccceeeEEEEEEEC
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV--D----------------------------DLSPTIGVDFKIKLLTVA 58 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~ 58 (211)
......++|+++|++++|||||+++|+...- . ......|.+.......+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 3456779999999999999999999965421 0 011123455555555555
Q ss_pred CEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhh---HH---HHHHHHHHHhhhhccCCCcc-EEEEeecCC
Q 028300 59 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRET---FT---NLSDVWAKEVDLYSTNQDCV-KMLVGNKVD 131 (211)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~p-~viv~nK~D 131 (211)
..+..+.||||||+.+|.......++.+|++|+|+|+++... ++ .... ....+. ..++| +++++||+|
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e-~l~~~~----~~~v~~iIvviNK~D 166 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAK----TAGVKHLIVLINKMD 166 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHH-HHHHHH----HcCCCeEEEEeecCC
Confidence 566789999999999998888888999999999999998531 11 1111 111111 23566 999999999
Q ss_pred CCCCc--cc----CHHHHHHHHHHc------CCeEEEeeccCCCcHHHHHH
Q 028300 132 RDSER--VV----SREEGIALAKEH------GSLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 132 l~~~~--~v----~~~~~~~~~~~~------~~~~~~~Sa~~~~gv~~l~~ 170 (211)
+.... +. ...+...++... .++++++||++|.|+.++++
T Consensus 167 l~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 167 DPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 85321 11 112233344443 35799999999999999765
No 141
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.88 E-value=2e-23 Score=167.63 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=102.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcccee--eEEEEEEECCEEEEEEEEeCCChhhhccch--------hh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVD--FKIKLLTVAGKRLKLTIWDTAGQERFRTLT--------SS 81 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~--------~~ 81 (211)
...++|+++|++|+|||||+|+|++..+.......+++ .....+.+++ ..+.+|||||..++...+ ..
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------C
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence 35689999999999999999999987653333333332 2223344444 567999999976544322 33
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccC
Q 028300 82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKT 161 (211)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 161 (211)
.+..+|++++|+|++++.+.... . |...+. ..|+++|+||+|+.....+. ....+. ...+++++||++
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~~-~-i~~~l~------~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAkt 367 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGDQ-E-IYEQVK------HRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQ 367 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHHH-H-HHHHHT------TSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTT
T ss_pred hhhcCCEEEEEeccCCCCCHHHH-H-HHHhcc------CCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCC
Confidence 67899999999999987665542 2 444432 36999999999997654433 111111 356799999999
Q ss_pred CCcHHHHHHHHHHHHHhcc
Q 028300 162 RENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 162 ~~gv~~l~~~i~~~~~~~~ 180 (211)
+.|+++++++|.+.+....
T Consensus 368 g~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 368 KQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp TBSHHHHHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHHHhccC
Confidence 9999999999999887654
No 142
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=2.7e-22 Score=150.69 Aligned_cols=165 Identities=16% Similarity=0.170 Sum_probs=104.1
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-C-CCCCc-cceeeEEEEEEECCEEEEEEEEeCCChhhhccc--------
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-D-DLSPT-IGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTL-------- 78 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~-------- 78 (211)
+....++|+|+|++|||||||+++|++... . ...++ ............. +..+.||||||+..+...
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHH
Confidence 345679999999999999999999998773 2 22222 2222222233333 356899999997654322
Q ss_pred ---hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhh-ccCCCccEEEEee-cCCCCCCcccCH-------HHHHHH
Q 028300 79 ---TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLY-STNQDCVKMLVGN-KVDRDSERVVSR-------EEGIAL 146 (211)
Q Consensus 79 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~viv~n-K~Dl~~~~~v~~-------~~~~~~ 146 (211)
....++.+|++|+|+|+++....... +...+... ......|.++++| |+|+.... +.. .+...+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~---~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQDQQ---AAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHHHHH---HHHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHHHHH---HHHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHH
Confidence 22367889999999999863222111 22222221 1122456677776 99996432 221 223345
Q ss_pred HHHcCCe---E--EEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 147 AKEHGSL---F--LECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 147 ~~~~~~~---~--~~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
....+.. + +++||+++.|++++|++|.+.+....
T Consensus 172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 5555432 2 78999999999999999999887755
No 143
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=3.6e-22 Score=160.35 Aligned_cols=161 Identities=22% Similarity=0.239 Sum_probs=108.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEE--EEEEECCEEEEEEEEeCCChhhhccc-----------
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKI--KLLTVAGKRLKLTIWDTAGQERFRTL----------- 78 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~D~~g~~~~~~~----------- 78 (211)
+..++|+++|++|||||||+|+|++.......+.++++... ..+.+++. .+.+||++|.......
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 45699999999999999999999988764444444544433 33445554 5789999996432211
Q ss_pred -hhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHH-HHH----cCC
Q 028300 79 -TSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIAL-AKE----HGS 152 (211)
Q Consensus 79 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~-~~~----~~~ 152 (211)
....++.+|++++++|+++..+..+.. +...+. ..++|+++|+||+|+.+.+....++.... ... ..+
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~~~~~~~--i~~~l~----~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGITRQDQR--MAGLME----RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYS 329 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHHH--HHHHHH----HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTS
T ss_pred HHHHHHhhCCEEEEEEeCCCCCCHHHHH--HHHHHH----HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCC
Confidence 124567899999999998866554422 333332 34899999999999976554444333222 222 357
Q ss_pred eEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 153 LFLECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 153 ~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
+++++||++|.|++++|+.+.+.+.+..
T Consensus 330 ~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 330 PLIFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 8999999999999999999998776653
No 144
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.88 E-value=2.8e-22 Score=153.77 Aligned_cols=120 Identities=14% Similarity=0.167 Sum_probs=95.5
Q ss_pred EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHhhhhccCCCccEEEEeec
Q 028300 60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVT----------RRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129 (211)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK 129 (211)
..+.+++||++|++.++..|..++++++++|+|||++ +.+++.+....|...+. .....++|+++++||
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~-~~~~~~~~iiL~~NK 243 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIIT-YPWFQNSSVILFLNK 243 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHT-SGGGTTCEEEEEEEC
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhh-hhccCCceEEEEEEC
Confidence 3578999999999999999999999999999999665 66778888774444433 324468999999999
Q ss_pred CCCCCCc----------------ccCHHHHHHHHH----------HcCCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 130 VDRDSER----------------VVSREEGIALAK----------EHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 130 ~Dl~~~~----------------~v~~~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
+|+..++ .+..+++..+.. ..++.+++|||+++.+|+.+|..+.+.+....
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 9985433 356677776643 34567899999999999999999999887653
No 145
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=4.9e-21 Score=152.40 Aligned_cols=159 Identities=19% Similarity=0.179 Sum_probs=104.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCC----CCCC--ccceeeEEEEEEE-------------C--C----EEEEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVD----DLSP--TIGVDFKIKLLTV-------------A--G----KRLKLTI 66 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~----~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~l 66 (211)
...++|+++|++++|||||+++|.+.... +..+ |....+....+.. . + ....+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45799999999999999999999854321 1112 3333333222211 1 1 2378999
Q ss_pred EeCCChhhhccchhhhccCCcEEEEEEECCC----hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CH
Q 028300 67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTR----RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SR 140 (211)
Q Consensus 67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~ 140 (211)
||+||+++|.......+..+|++|+|+|+++ +++.+.+.. | .. ....|+++++||+|+.+.... ..
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~-~----~~---l~~~~iivv~NK~Dl~~~~~~~~~~ 157 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA-L----EI---LGIDKIIIVQNKIDLVDEKQAEENY 157 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH-H----HH---TTCCCEEEEEECTTSSCTTTTTTHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH-H----HH---cCCCeEEEEEEccCCCCHHHHHHHH
Confidence 9999999998777778889999999999995 444444432 2 11 123589999999999765432 23
Q ss_pred HHHHHHHHH---cCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300 141 EEGIALAKE---HGSLFLECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 141 ~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
+++..++.. .+++++++||+++.|+++++++|.+.+..
T Consensus 158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 445555543 35789999999999999999999886654
No 146
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=9.9e-22 Score=146.40 Aligned_cols=169 Identities=14% Similarity=0.073 Sum_probs=104.1
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCCCC-CCCccceeeEEEEEEECCEEEEEEEEeCCChh--------hhccch
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSVDD-LSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE--------RFRTLT 79 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~--------~~~~~~ 79 (211)
......++|+++|.+|+|||||+|+|++..... .....+++...........+..+.||||||.. .+....
T Consensus 16 ~~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 16 FQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp ----CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred ccCCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 344678999999999999999999999887632 22232333322222222234678999999952 222222
Q ss_pred hhh----ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhc--cCCCccEEEEeecCCCCCCcccC------HHHHHHHH
Q 028300 80 SSY----YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYS--TNQDCVKMLVGNKVDRDSERVVS------REEGIALA 147 (211)
Q Consensus 80 ~~~----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~p~viv~nK~Dl~~~~~v~------~~~~~~~~ 147 (211)
... .+.+|++|+|+|++....... . +...+.... ...+.|+++++||.|+....... ....+.+.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~--~-~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQ--Q-AVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHH--H-HHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHH--H-HHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHH
Confidence 222 389999999999985322111 1 222222211 12378999999999996532111 13346666
Q ss_pred HHcCCeEEEeeccC-----CCcHHHHHHHHHHHHHhcc
Q 028300 148 KEHGSLFLECSAKT-----RENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 148 ~~~~~~~~~~Sa~~-----~~gv~~l~~~i~~~~~~~~ 180 (211)
...+..|+.++... +.|++++++.|.+.+.++.
T Consensus 173 ~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~ 210 (247)
T 3lxw_A 173 AECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHK 210 (247)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 77787787776554 5899999999988887643
No 147
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.87 E-value=1e-21 Score=161.78 Aligned_cols=159 Identities=23% Similarity=0.270 Sum_probs=108.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCC--CC------C------CCCccceeeEEEEEEE-----CCEEEEEEEEeCCChh
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSS--VD------D------LSPTIGVDFKIKLLTV-----AGKRLKLTIWDTAGQE 73 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~--~~------~------~~~~~~~~~~~~~~~~-----~~~~~~~~l~D~~g~~ 73 (211)
+-.+|+++|+.++|||||+++|+... .. . ...+.|.+.......+ ++..+.+.||||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 45799999999999999999998632 11 0 0112333333222222 4557899999999999
Q ss_pred hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-
Q 028300 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS- 152 (211)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~- 152 (211)
+|...+...++.+|++|+|+|+++..+...... |..... .++|+++|+||+|+...+ ......++...++.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~-~~~~~~-----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLAN-CYTAME-----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGID 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHH-HHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHH-HHHHHH-----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCC
Confidence 999888899999999999999998766555554 544332 478999999999996543 22223444555565
Q ss_pred --eEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300 153 --LFLECSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 153 --~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
+++++||++|.|+++++++|.+.+...
T Consensus 155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 155 ATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp CTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred cceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 499999999999999999999877653
No 148
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.87 E-value=1.3e-22 Score=164.71 Aligned_cols=153 Identities=17% Similarity=0.103 Sum_probs=101.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCccceeeEEEEEEECCEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV--D----------------------------DLSPTIGVDFKIKLLTVAGKR 61 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (211)
...+||+++|.+++|||||+++|++... . ......|.+.......+....
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 3569999999999999999999975511 0 011123444444444455566
Q ss_pred EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHH------HHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300 62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTN------LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~ 135 (211)
..+.||||||+.+|.......++.+|++|+|+|+++..+... ... ....+. .....|+++|+||+|+.+.
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e-~~~~~~---~~~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKE-HMLLAS---SLGIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHH-HHHHHH---HTTCCCEEEEEECGGGGTT
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHH-HHHHHH---HcCCCcEEEEEECcCcccc
Confidence 789999999999999888999999999999999998644322 111 111222 1223579999999999764
Q ss_pred cccCHHHHH----HHHHHc-----CCeEEEeeccCCCcHHHH
Q 028300 136 RVVSREEGI----ALAKEH-----GSLFLECSAKTRENVEQC 168 (211)
Q Consensus 136 ~~v~~~~~~----~~~~~~-----~~~~~~~Sa~~~~gv~~l 168 (211)
+....++.. .+.... +++++++||++|.|++++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 433333333 223322 457999999999999753
No 149
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=9.5e-23 Score=164.44 Aligned_cols=158 Identities=17% Similarity=0.121 Sum_probs=105.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCC--------hhhhccchhh
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAG--------QERFRTLTSS 81 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g--------~~~~~~~~~~ 81 (211)
......+|+++|.+|||||||+|+|.+..+.....++|++...........+..+.+||||| +..+...+..
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~ 98 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEI 98 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 33456799999999999999999999988776777888888777777777777899999999 6667777888
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC-eEEEeecc
Q 028300 82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS-LFLECSAK 160 (211)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~ 160 (211)
+++.+|++|+|+|..+.....+ ..+...+. ..++|+++|+||+|+.+... ...++. ..+. .++++||.
T Consensus 99 ~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~----~~~~pvilV~NK~D~~~~~~----~~~e~~-~lg~~~~~~iSA~ 167 (456)
T 4dcu_A 99 AMDEADVIIFMVNGREGVTAAD--EEVAKILY----RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGT 167 (456)
T ss_dssp HHHHCSEEEEEEESSSCSCHHH--HHHHHHHT----TCCSCEEEEEECC-------------CCSG-GGSSSSEEECCTT
T ss_pred hHhhCCEEEEEEeCCCCCChHH--HHHHHHHH----HcCCCEEEEEECccchhhhh----hHHHHH-HcCCCceEEeecc
Confidence 8999999999999887433222 22334443 35899999999999853321 111111 2233 46799999
Q ss_pred CCCcHHHHHHHHHHHHHh
Q 028300 161 TRENVEQCFEQLALKIME 178 (211)
Q Consensus 161 ~~~gv~~l~~~i~~~~~~ 178 (211)
+|.|+.++++++.+.+..
T Consensus 168 ~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 168 HGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TCTTHHHHHHHHHTTGGG
T ss_pred cccchHHHHHHHHhhccc
Confidence 999999999999887654
No 150
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.87 E-value=1.5e-21 Score=151.76 Aligned_cols=119 Identities=16% Similarity=0.163 Sum_probs=90.6
Q ss_pred EEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHhhhhccCCCccEEEEeec
Q 028300 60 KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVT----------RRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129 (211)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK 129 (211)
..+.+.+||++|++.++..|..++++++++|+|||++ +.+++++... |...+.......++|+++|+||
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~-~~~~i~~~~~~~~~piiLvgNK 259 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKE-LFDWVLKQPCFEKTSFMLFLNK 259 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHH-HHHHHHTCGGGSSCEEEEEEEC
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHH-HHHHHHhccccCCCeEEEEEEC
Confidence 5789999999999999999999999999999999998 7888999988 5444433323468999999999
Q ss_pred CCCCCCcc--c-------------------CHHHHHHHHHH----------------cCCeEEEeeccCCCcHHHHHHHH
Q 028300 130 VDRDSERV--V-------------------SREEGIALAKE----------------HGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 130 ~Dl~~~~~--v-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
+|+..++. + ..+++..++.. ..+.+++|||+++.||+++|+++
T Consensus 260 ~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v 339 (354)
T 2xtz_A 260 FDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLV 339 (354)
T ss_dssp HHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHH
T ss_pred cchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHH
Confidence 99843221 1 13455555332 12346999999999999999999
Q ss_pred HHHHHhc
Q 028300 173 ALKIMEV 179 (211)
Q Consensus 173 ~~~~~~~ 179 (211)
.+.+...
T Consensus 340 ~~~I~~~ 346 (354)
T 2xtz_A 340 DETLRRR 346 (354)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887653
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.87 E-value=4e-21 Score=153.03 Aligned_cols=161 Identities=17% Similarity=0.178 Sum_probs=111.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCC----CCCC--ccceeeEEEEEEE-------------C--C----EEEEE
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVD----DLSP--TIGVDFKIKLLTV-------------A--G----KRLKL 64 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~----~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~ 64 (211)
.....++|+++|++++|||||+++|.+.... +..+ |....+....+.. . + ....+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 3467799999999999999999999854321 1112 3322333222211 0 1 13789
Q ss_pred EEEeCCChhhhccchhhhccCCcEEEEEEECCC----hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--
Q 028300 65 TIWDTAGQERFRTLTSSYYRGAQGIILVYDVTR----RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-- 138 (211)
Q Consensus 65 ~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-- 138 (211)
.|||+||+.+|.......+..+|++|+|+|+++ +++.+.+.. + ... ...|+++|+||+|+.+....
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~-~----~~~---~~~~iivviNK~Dl~~~~~~~~ 157 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA-L----QII---GQKNIIIAQNKIELVDKEKALE 157 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH-H----HHH---TCCCEEEEEECGGGSCHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH-H----HHc---CCCcEEEEEECccCCCHHHHHH
Confidence 999999999988777778889999999999995 344444332 2 211 23589999999998654321
Q ss_pred CHHHHHHHHHH---cCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300 139 SREEGIALAKE---HGSLFLECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 139 ~~~~~~~~~~~---~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
..+++..++.. .+++++++||+++.|+++++++|.+.+..
T Consensus 158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 22334444433 35789999999999999999999886654
No 152
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.86 E-value=2.8e-21 Score=159.05 Aligned_cols=160 Identities=23% Similarity=0.264 Sum_probs=112.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCC--CCC------CC------CccceeeE----EEEEEE-CCEEEEEEEEeCCCh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSS--VDD------LS------PTIGVDFK----IKLLTV-AGKRLKLTIWDTAGQ 72 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~--~~~------~~------~~~~~~~~----~~~~~~-~~~~~~~~l~D~~g~ 72 (211)
++..+|+++|+.++|||||+++|+... ... .. ...|.+.. ...+.. ++..+.+.||||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 456799999999999999999998631 110 00 11222221 111221 455689999999999
Q ss_pred hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCC
Q 028300 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGS 152 (211)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 152 (211)
.+|...+...++.+|++|+|+|+++..+...... |.... ..++|+++|+||+|+...+ ......++...++.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~-~~~a~-----~~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVAN-FWKAV-----EQDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGL 155 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHH-HHHHH-----HTTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHH-HHHHH-----HCCCCEEEEEeccCccccC--HHHHHHHHHHhhCC
Confidence 9998888888999999999999999766666554 54433 2478999999999996543 12223444455565
Q ss_pred ---eEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300 153 ---LFLECSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 153 ---~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
+++++||++|.|++++|++|.+.+...
T Consensus 156 ~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 156 DPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp CGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred CcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 499999999999999999999877653
No 153
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.86 E-value=1.1e-20 Score=147.65 Aligned_cols=163 Identities=20% Similarity=0.135 Sum_probs=106.6
Q ss_pred eeE-EEEEcCCCCcHHHHHHHHhhCCCC-CCCCccceeeEEEEEEECCEEEEEEEEeCCChh---------hhccchhhh
Q 028300 14 SFK-ILLIGDSGVGKSSLLVSFISSSVD-DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE---------RFRTLTSSY 82 (211)
Q Consensus 14 ~~~-I~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~---------~~~~~~~~~ 82 (211)
.++ |+++|++|+|||||+|+|.+..+. ...+....+.....+.+.+ ..+.+|||+|.- .+...+ ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 455 999999999999999999987751 1112222223344556665 467899999962 233322 35
Q ss_pred ccCCcEEEEEEECCChh--hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC-HHHHHHHHHHc---CCeEEE
Q 028300 83 YRGAQGIILVYDVTRRE--TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS-REEGIALAKEH---GSLFLE 156 (211)
Q Consensus 83 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~-~~~~~~~~~~~---~~~~~~ 156 (211)
+..+|++++|+|++++. ..+.... |...+... ...+.|+++|+||+|+....... ......+...+ +.++++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~-~~~~L~~l-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQS-SFEILREI-GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHH-HHHHHHHH-TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHH-HHHHHHHh-CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 78899999999999876 4444433 55555543 34578999999999986543111 11222233444 236899
Q ss_pred eeccCCCcHHHHHHHHHHHHHhccc
Q 028300 157 CSAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 157 ~Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
+||+++.|+++++++|.+.+.....
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~~~~~ 357 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLATQLSL 357 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHC-
T ss_pred EECCCCcCHHHHHHHHHHHhcccCC
Confidence 9999999999999999987766543
No 154
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.86 E-value=6.9e-22 Score=154.92 Aligned_cols=147 Identities=9% Similarity=0.072 Sum_probs=105.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEEC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDV 95 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 95 (211)
+|+++|++++|||||+++|+ ..+.+.......+......+.||||||+.+|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 99999999999999999998 22222222223445455679999999999987777778899999999999
Q ss_pred CChhhHHHHHHHHHHHhhhhccCCCccE-EEEee-cCCCCCCcccCH--HHHHHHHHHc---CCeEEE--eeccC---CC
Q 028300 96 TRRETFTNLSDVWAKEVDLYSTNQDCVK-MLVGN-KVDRDSERVVSR--EEGIALAKEH---GSLFLE--CSAKT---RE 163 (211)
Q Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~~p~-viv~n-K~Dl~~~~~v~~--~~~~~~~~~~---~~~~~~--~Sa~~---~~ 163 (211)
++ ........ +...+.. .++|. ++++| |+|+ +.+.+.. ++...++... .+++++ +||++ +.
T Consensus 93 ~~-g~~~qt~e-~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 93 PQ-GLDAHTGE-CIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp TT-CCCHHHHH-HHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred CC-CCcHHHHH-HHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 53 23334444 4444432 36777 89999 9998 4332221 3344444333 368999 99999 99
Q ss_pred cHHHHHHHHHHHHHhc
Q 028300 164 NVEQCFEQLALKIMEV 179 (211)
Q Consensus 164 gv~~l~~~i~~~~~~~ 179 (211)
|++++++.|.+.+...
T Consensus 166 gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 166 GVDELKARINEVAEKI 181 (370)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcccc
Confidence 9999999999877654
No 155
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=6.1e-22 Score=149.78 Aligned_cols=159 Identities=19% Similarity=0.295 Sum_probs=90.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-C-CC-------CCccceeeEEEEEEECCEEEEEEEEeCCChhh-------h
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-D-DL-------SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER-------F 75 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~-~~-------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-------~ 75 (211)
...++|+++|.+|+|||||+|+|++... . .+ .++.+.+.....+...+..+.+.+|||||... +
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 4579999999999999999999887664 2 22 33444444433333344446899999999622 2
Q ss_pred ccch-------hhhc-------------cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300 76 RTLT-------SSYY-------------RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 76 ~~~~-------~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~ 135 (211)
..+. ..++ ..+|+++++++.+... +......+...+.. ++|+++|+||+|+...
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE-----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT-----TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc-----cCCEEEEEeccCCCCH
Confidence 2211 1222 2378999999876522 11222214444332 7999999999998654
Q ss_pred cccCH--HHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300 136 RVVSR--EEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 136 ~~v~~--~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
.+... ..+.......+++++.+|+.++.|+++++++|.+.+
T Consensus 160 ~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 160 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 33322 234445556789999999999999999999987754
No 156
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.86 E-value=7.3e-22 Score=153.98 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=87.9
Q ss_pred EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHhhhhccCCCccEEEEeecC
Q 028300 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTR----------RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~ 130 (211)
.+.+.+||++|+..++..|..++++++++|+|||+++ .+++.+....|...+... ...++|+++++||+
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~-~~~~~piILv~NK~ 278 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR-VFSNVSIILFLNKT 278 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG-GGTTSEEEEEEECH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch-hhCCCCEEEEEECh
Confidence 4789999999999999999999999999999999999 778999888454444432 34679999999999
Q ss_pred CCCCCc----------------ccCHHHHHHHHH-----------HcCCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300 131 DRDSER----------------VVSREEGIALAK-----------EHGSLFLECSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 131 Dl~~~~----------------~v~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
|+..++ .+..+++..++. ..++.+++|||+++.||+++|+++.+.+...
T Consensus 279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~ 354 (362)
T 1zcb_A 279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHD 354 (362)
T ss_dssp HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHH
Confidence 985322 255666666551 3457799999999999999999999988654
No 157
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=3e-21 Score=154.78 Aligned_cols=155 Identities=19% Similarity=0.170 Sum_probs=103.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC---CCC----------CCc-------------------cceeeEEEEEEEC
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV---DDL----------SPT-------------------IGVDFKIKLLTVA 58 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~---~~~----------~~~-------------------~~~~~~~~~~~~~ 58 (211)
....++|+++|++++|||||+++|++... ... ..+ .|.+.......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 35679999999999999999999986541 110 011 1222222222333
Q ss_pred CEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc
Q 028300 59 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV 138 (211)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v 138 (211)
.....+.||||||+.+|.......+..+|++|+|+|+++..... ... +...+... ...|+++|+||+|+.+....
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~-~l~~~~~~---~~~~iIvviNK~Dl~~~~~~ 175 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRR-HSYIASLL---GIKHIVVAINKMDLNGFDER 175 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHH-HHHHHHHT---TCCEEEEEEECTTTTTSCHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHH-HHHHHHHc---CCCeEEEEEEcCcCCcccHH
Confidence 34567999999999999887888899999999999999854222 222 33333222 22369999999999653211
Q ss_pred ----CHHHHHHHHHHcC-----CeEEEeeccCCCcHHHHHH
Q 028300 139 ----SREEGIALAKEHG-----SLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 139 ----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~ 170 (211)
...+...++..++ ++++++||++|.|++++++
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 1234455566666 6799999999999987543
No 158
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.85 E-value=3.1e-22 Score=156.63 Aligned_cols=163 Identities=18% Similarity=0.294 Sum_probs=90.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-C-CCC--------CccceeeEEEEEEECCEEEEEEEEeCCCh-------hh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-D-DLS--------PTIGVDFKIKLLTVAGKRLKLTIWDTAGQ-------ER 74 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~-~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~-------~~ 74 (211)
...++|+|+|++|+|||||+++|++... . .+. ++.+.......+...+....+.+||+||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 4578999999999999999999876543 2 111 23233332223333455678999999998 55
Q ss_pred hccchh-------hhccCC-------------cEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 75 FRTLTS-------SYYRGA-------------QGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 75 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
+..++. .+++.+ |+++|+++.+ ..++..+...|...+ ..++|+++|+||+|+..
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT 188 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCC
Confidence 555554 444333 3455555432 334555543355443 25789999999999976
Q ss_pred CcccCH--HHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHHHhccc
Q 028300 135 ERVVSR--EEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVPS 181 (211)
Q Consensus 135 ~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 181 (211)
.+++.. .++..++..++++++++||+++.+ ++.|.++.+.+.+..+
T Consensus 189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 655443 455566666789999999999999 8889998888876543
No 159
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.85 E-value=2.5e-23 Score=169.08 Aligned_cols=160 Identities=19% Similarity=0.148 Sum_probs=109.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGII 90 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i 90 (211)
+++++|+++|++++|||||+++|.+..+ ....+....+.....+... ....+.||||||+..|..++...+..+|++|
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 4678999999999999999999997765 2222222222211111111 2346899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH-HHHHHH---HHHc--CCeEEEeeccCCCc
Q 028300 91 LVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR-EEGIAL---AKEH--GSLFLECSAKTREN 164 (211)
Q Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~-~~~~~~---~~~~--~~~~~~~Sa~~~~g 164 (211)
+|+|+++......... | ..+ ...++|+++++||+|+.+...... .+...+ ...+ .++++++||++|.|
T Consensus 81 LVVDa~dg~~~qt~e~-l-~~~----~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~G 154 (537)
T 3izy_P 81 LVVAADDGVMKQTVES-I-QHA----KDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGEN 154 (537)
T ss_dssp EECBSSSCCCHHHHHH-H-HHH----HTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCS
T ss_pred EEEECCCCccHHHHHH-H-HHH----HHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999998544433322 2 222 235789999999999864322111 111111 1111 24799999999999
Q ss_pred HHHHHHHHHHHHHh
Q 028300 165 VEQCFEQLALKIME 178 (211)
Q Consensus 165 v~~l~~~i~~~~~~ 178 (211)
++++|++|...+..
T Consensus 155 I~eLle~I~~l~~~ 168 (537)
T 3izy_P 155 MMALAEATIALAEM 168 (537)
T ss_dssp SHHHHHHHHHHHTT
T ss_pred chhHHHHHHHhhhc
Confidence 99999999887653
No 160
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.85 E-value=2.9e-21 Score=153.21 Aligned_cols=159 Identities=14% Similarity=0.086 Sum_probs=110.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCC-------CCCC--------CCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSS-------VDDL--------SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT 77 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~-------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 77 (211)
..++|+++|++++|||||+++|.+.. +..+ ....+.+.......+......+.|||+||+.+|..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 46899999999999999999998641 1100 01234444433444444557889999999999987
Q ss_pred chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCccc---CHHHHHHHHHHcC--
Q 028300 78 LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVV---SREEGIALAKEHG-- 151 (211)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v---~~~~~~~~~~~~~-- 151 (211)
.....+..+|++|+|+|+++......... | ..+.. .++| +++++||+|+...... ...+...++..++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l-~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~ 155 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREH-L-LLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYK 155 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHH-H-HHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHH-H-HHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 78888999999999999998533222221 2 22222 3778 6899999998642211 1234555666655
Q ss_pred ---CeEEEeeccCCC---------c-HHHHHHHHHHHHH
Q 028300 152 ---SLFLECSAKTRE---------N-VEQCFEQLALKIM 177 (211)
Q Consensus 152 ---~~~~~~Sa~~~~---------g-v~~l~~~i~~~~~ 177 (211)
++++++||+++. | +.++++.|.+.+.
T Consensus 156 ~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 156 GEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp TTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred cccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 589999999965 3 8888888877654
No 161
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.85 E-value=3.6e-21 Score=148.08 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=93.6
Q ss_pred CEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECC----------ChhhHHHHHHHHHHHhhhhccCCCccEEEEee
Q 028300 59 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVT----------RRETFTNLSDVWAKEVDLYSTNQDCVKMLVGN 128 (211)
Q Consensus 59 ~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~n 128 (211)
...+.+++||++|++.++..|..++++++++|+|||++ +.+++.+....|...+... ...++|+++++|
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~-~~~~~piiLv~N 236 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE-FLKGAVKLIFLN 236 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG-GGTTSEEEEEEE
T ss_pred eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh-ccCCCeEEEEEE
Confidence 34578999999999999999999999999999999998 6788998888454444432 446899999999
Q ss_pred cCCCCCCc---------------ccCHHHHHHHHHH-c--------------------------CCeEEEeeccCCCcHH
Q 028300 129 KVDRDSER---------------VVSREEGIALAKE-H--------------------------GSLFLECSAKTRENVE 166 (211)
Q Consensus 129 K~Dl~~~~---------------~v~~~~~~~~~~~-~--------------------------~~~~~~~Sa~~~~gv~ 166 (211)
|+|+..++ ....+++..++.. + .+.+++|||++..+|+
T Consensus 237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~ 316 (340)
T 4fid_A 237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK 316 (340)
T ss_dssp CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence 99984321 1234454443322 2 3668999999999999
Q ss_pred HHHHHHHHHHHh
Q 028300 167 QCFEQLALKIME 178 (211)
Q Consensus 167 ~l~~~i~~~~~~ 178 (211)
.+|+.+.+.++.
T Consensus 317 ~vF~~v~~~Il~ 328 (340)
T 4fid_A 317 RVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999887
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=1.6e-21 Score=155.19 Aligned_cols=161 Identities=14% Similarity=0.088 Sum_probs=111.1
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhC--------CCCCC--------CCccceeeEEEEEEECCEEEEEEEEeCCChhh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISS--------SVDDL--------SPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (211)
....++|+++|++++|||||+++|.+. .+..+ ..+.+.+.......+......+.||||||+.+
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 346799999999999999999999873 22111 01234444444444545557889999999999
Q ss_pred hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCccc---CHHHHHHHHHHc
Q 028300 75 FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVV---SREEGIALAKEH 150 (211)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v---~~~~~~~~~~~~ 150 (211)
|.......+..+|++|+|+|+++.... .... +...+.. .++| +++++||+|+...... ...+...++..+
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~-~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMP-QTRE-HILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY 161 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHH-HHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHH-HHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence 988888889999999999999886432 2333 3344332 3678 8899999998642211 122344555555
Q ss_pred C-----CeEEEeeccCCCc------------------HHHHHHHHHHHHH
Q 028300 151 G-----SLFLECSAKTREN------------------VEQCFEQLALKIM 177 (211)
Q Consensus 151 ~-----~~~~~~Sa~~~~g------------------v~~l~~~i~~~~~ 177 (211)
+ ++++++||+++.| +.++++.|.+.+.
T Consensus 162 ~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp TSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 4 6899999999987 6666666665443
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.85 E-value=5.6e-22 Score=158.95 Aligned_cols=157 Identities=17% Similarity=0.217 Sum_probs=104.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC--CCCCC----------------------------CCccceeeEEEEEEECCEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS--SVDDL----------------------------SPTIGVDFKIKLLTVAGKR 61 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~--~~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 61 (211)
...++|+++|++++|||||+++|+.. .+... ....+.+.......+....
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 35789999999999999999999864 22110 0012333333333344455
Q ss_pred EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhh---ccCCC-ccEEEEeecCCCCCCc-
Q 028300 62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLY---STNQD-CVKMLVGNKVDRDSER- 136 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~-~p~viv~nK~Dl~~~~- 136 (211)
..+.||||||+.+|...+...++.+|++|+|+|+++ .+|+.... |......+ ....+ .|+++++||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~-~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMS-VEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHS-TTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccccccc-cchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 789999999999998888889999999999999998 56665433 22111111 01224 4689999999996521
Q ss_pred -c----cCHHHHHHHHHHcC-----CeEEEeeccCCCcHHHHHH
Q 028300 137 -V----VSREEGIALAKEHG-----SLFLECSAKTRENVEQCFE 170 (211)
Q Consensus 137 -~----v~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l~~ 170 (211)
+ ...++...++...+ ++++++||++|.|+.++++
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 1 12344556666655 6799999999999986554
No 164
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=1.3e-21 Score=159.44 Aligned_cols=118 Identities=17% Similarity=0.229 Sum_probs=82.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCC------------------CCCC---CCccceeeEEEEEEECCEEEEEEEEeCC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSS------------------VDDL---SPTIGVDFKIKLLTVAGKRLKLTIWDTA 70 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~------------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 70 (211)
.+..+|+|+|++|+|||||+++|+... +... ....+.+.......+...+..+.|||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 456899999999999999999996211 0000 0012222222222333345789999999
Q ss_pred ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~ 135 (211)
|+.+|...+...++.+|++|+|+|+++..+...... |.. +. ..++|+++|+||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~-~~~-~~----~~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKL-MEV-CR----LRHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHH-HHH-HH----TTTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHH-HH----HcCCCEEEEEeCCCCccc
Confidence 999998888999999999999999998665555443 432 22 347899999999998643
No 165
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2e-21 Score=139.44 Aligned_cols=123 Identities=19% Similarity=0.214 Sum_probs=87.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccC----C
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRG----A 86 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~----~ 86 (211)
....++|+++|++|||||||+++|.+..+.....+...+. ........+.+||+||+..+...+..++.. +
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 119 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-----AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFV 119 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-----eeeecCCeEEEEECCCCchHHHHHHHHHHhhcccC
Confidence 3677999999999999999999999987643211111111 111245678999999998887777777665 8
Q ss_pred cEEEEEEECC-ChhhHHHHHHHHHHHhhhhc--cCCCccEEEEeecCCCCCCccc
Q 028300 87 QGIILVYDVT-RRETFTNLSDVWAKEVDLYS--TNQDCVKMLVGNKVDRDSERVV 138 (211)
Q Consensus 87 d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~--~~~~~p~viv~nK~Dl~~~~~v 138 (211)
|++++|||++ +.+++..+...+...+.... ...++|+++|+||+|+.+...+
T Consensus 120 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 120 KGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred CEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 9999999999 88899888874444443221 2368999999999999765543
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.84 E-value=1.7e-20 Score=154.66 Aligned_cols=158 Identities=23% Similarity=0.166 Sum_probs=107.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC-----CccceeeEEEEE------------EECCEEEEEEEEeCCChhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLS-----PTIGVDFKIKLL------------TVAGKRLKLTIWDTAGQER 74 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~-----~~~~~~~~~~~~------------~~~~~~~~~~l~D~~g~~~ 74 (211)
.+.++|+++|++++|||||+++|.+..+.... ++.+..+..... ........+.||||||+..
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 35689999999999999999999876543222 222222211000 0000112589999999999
Q ss_pred hccchhhhccCCcEEEEEEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC------------
Q 028300 75 FRTLTSSYYRGAQGIILVYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS------------ 139 (211)
Q Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~------------ 139 (211)
|...+...++.+|++|+|+|+++ +++++.+.. +. ..++|+++++||+|+.......
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~-----l~----~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~ 153 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI-----LR----MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQ 153 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH-----HH----HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTS
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH-----HH----HcCCeEEEEecccccccccccccCCchHHHHHHh
Confidence 99988888999999999999998 666655432 22 2478999999999986432110
Q ss_pred -H----------HHHHHHHHHcC---------------CeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300 140 -R----------EEGIALAKEHG---------------SLFLECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 140 -~----------~~~~~~~~~~~---------------~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
. .+........+ ++++++||++|.|+++++++|...+..
T Consensus 154 ~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 154 DIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0 01111111111 379999999999999999999987653
No 167
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.4e-21 Score=161.91 Aligned_cols=156 Identities=18% Similarity=0.100 Sum_probs=102.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCC------------------------------ccceeeEEEEEEECCEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSP------------------------------TIGVDFKIKLLTVAGKR 61 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~ 61 (211)
...++|+++|++++|||||+++|++........ ..|++.......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457899999999999999999998664311110 12334333333444455
Q ss_pred EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhh---HHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc
Q 028300 62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRET---FTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV 138 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v 138 (211)
..+.||||||+.+|.......++.+|++|+|+|+++... +..... +...+.........|+++|+||+|+.+....
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~q-t~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQ-TKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSH-HHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhH-HHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence 789999999999998888889999999999999987420 000001 1111111111223469999999999764332
Q ss_pred CHH----HHHHHHHHc-----CCeEEEeeccCCCcHHHH
Q 028300 139 SRE----EGIALAKEH-----GSLFLECSAKTRENVEQC 168 (211)
Q Consensus 139 ~~~----~~~~~~~~~-----~~~~~~~Sa~~~~gv~~l 168 (211)
..+ +...++... +++++++||++|.|+.++
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 222 223333333 358999999999999876
No 168
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.83 E-value=3.5e-20 Score=145.66 Aligned_cols=119 Identities=17% Similarity=0.132 Sum_probs=93.3
Q ss_pred EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCC----------hhhHHHHHHHHHHHhhhhccCCCccEEEEeecC
Q 028300 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTR----------RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~ 130 (211)
.+.+.+||++|+..++..|..++++++++|+|||+++ .+++.+... |...+.......++|++||+||+
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~-~~~~i~~~~~~~~~piiLvgNK~ 294 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALN-LFKSIWNNRWLRTISVILFLNKQ 294 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHH-HHHHHHTCTTCSSCCEEEEEECH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHH-HHHHHHhcccCCCCeEEEEEECh
Confidence 3789999999999999999999999999999999999 889999988 55555433234689999999999
Q ss_pred CCCCCcc---c---------------------------CHHHHHHHH-----HH--------cCCeEEEeeccCCCcHHH
Q 028300 131 DRDSERV---V---------------------------SREEGIALA-----KE--------HGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 131 Dl~~~~~---v---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~gv~~ 167 (211)
|+...+. + ..+++..++ .. ..+.+++|||+++.||++
T Consensus 295 DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~ 374 (402)
T 1azs_C 295 DLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR 374 (402)
T ss_dssp HHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHH
T ss_pred hhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHH
Confidence 9843322 1 134444443 21 245678999999999999
Q ss_pred HHHHHHHHHHhcc
Q 028300 168 CFEQLALKIMEVP 180 (211)
Q Consensus 168 l~~~i~~~~~~~~ 180 (211)
+|.++.+.+....
T Consensus 375 vF~~v~~~I~~~~ 387 (402)
T 1azs_C 375 VFNDCRDIIQRMH 387 (402)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988776543
No 169
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.83 E-value=1.6e-21 Score=157.47 Aligned_cols=156 Identities=20% Similarity=0.185 Sum_probs=89.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCC--CCC----------------------C------CCccceeeEEEEEEECCEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSS--VDD----------------------L------SPTIGVDFKIKLLTVAGKR 61 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~--~~~----------------------~------~~~~~~~~~~~~~~~~~~~ 61 (211)
...++|+++|++++|||||+++|+... +.. . ....+.+.......+....
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 467899999999999999999997521 110 0 0012222222211222234
Q ss_pred EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChh---hHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCc-
Q 028300 62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE---TFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSER- 136 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~- 136 (211)
..+.|||+||+.+|.......+..+|++|+|+|+++.. +|+.... +...+... ...++| +++++||+|+....
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~q-t~e~l~~~-~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ-TREHAVLA-RTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCC-HHHHHHHH-HHTTCSSEEEEEECTTSTTCSS
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCc-HHHHHHHH-HHcCCCEEEEEEECccCCCccc
Confidence 67999999999999888888899999999999999852 2221111 22222211 234677 99999999995421
Q ss_pred -c----cCHHHHHHHHHHc-------CCeEEEeeccCCCcHHHHH
Q 028300 137 -V----VSREEGIALAKEH-------GSLFLECSAKTRENVEQCF 169 (211)
Q Consensus 137 -~----v~~~~~~~~~~~~-------~~~~~~~Sa~~~~gv~~l~ 169 (211)
. ....+...++... +++++++||++|.|+.+++
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 1122345555554 4679999999999998766
No 170
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.83 E-value=4.5e-20 Score=134.08 Aligned_cols=162 Identities=17% Similarity=0.166 Sum_probs=101.4
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh----------hcc
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER----------FRT 77 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----------~~~ 77 (211)
.......+|+++|++|||||||++++.+..+ ..+.++.|.+.....+.+.+ .+.+||+||... +..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHH
Confidence 3456678999999999999999999998874 55566777665443333333 578999999632 222
Q ss_pred chhhhc---cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CHHHHHHHHHHcC-
Q 028300 78 LTSSYY---RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SREEGIALAKEHG- 151 (211)
Q Consensus 78 ~~~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~~~~~~~~~~~~- 151 (211)
....++ ..++++++++|+++..+..... +...+. ..++|+++++||+|+....+. ....+..++...+
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~----~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~ 171 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQ--MIEWAV----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG 171 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHH----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHHH--HHHHHH----HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence 222333 5789999999998865543211 122222 247899999999998653221 1234444444443
Q ss_pred -CeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300 152 -SLFLECSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 152 -~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
+.++++|++++.|+++++++|.+.+.+.
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 4689999999999999999998876543
No 171
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=2.6e-20 Score=160.69 Aligned_cols=161 Identities=14% Similarity=0.047 Sum_probs=108.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCC-------CC--------CCCCccceeeEEEEEEECCEEEEEEEEeCCChhhh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSS-------VD--------DLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERF 75 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~-------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~ 75 (211)
....++|+++|++++|||||+++|.+.. +. ....+.|.+.....+.++.....+.||||||+.+|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3467999999999999999999998641 10 11123344443333344445578999999999999
Q ss_pred ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCCCCCCccc---CHHHHHHHHHHcC
Q 028300 76 RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDSERVV---SREEGIALAKEHG 151 (211)
Q Consensus 76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~~~~v---~~~~~~~~~~~~~ 151 (211)
.......+..+|++|+|+|+++....+ ... +...+.. .++| +++++||+|+.+.... ...+...++...+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrE-hL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQ-TRE-HILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTT-HHH-HHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHH-HHH-HHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 888888899999999999999853222 222 3333332 2678 7899999999653221 1234555666554
Q ss_pred -----CeEEEeeccCC--------CcHHHHHHHHHHHHH
Q 028300 152 -----SLFLECSAKTR--------ENVEQCFEQLALKIM 177 (211)
Q Consensus 152 -----~~~~~~Sa~~~--------~gv~~l~~~i~~~~~ 177 (211)
++++++||++| .|+.+++++|.+.+.
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 68999999999 468888888776554
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.82 E-value=2.9e-21 Score=155.54 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=100.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC--CCCCC----------------------------CCccceeeEEEEEEECCEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS--SVDDL----------------------------SPTIGVDFKIKLLTVAGKR 61 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~--~~~~~----------------------------~~~~~~~~~~~~~~~~~~~ 61 (211)
...++|+++|++++|||||+++|++. .+... ....|.+.......+....
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 35799999999999999999999864 12110 0012222222222334445
Q ss_pred EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChh---hHH---HHHHHHHHHhhhhccCCCcc-EEEEeecCCCCC
Q 028300 62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE---TFT---NLSDVWAKEVDLYSTNQDCV-KMLVGNKVDRDS 134 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~p-~viv~nK~Dl~~ 134 (211)
..+.||||||+.+|.......+..+|++|+|+|+++.. +|+ .... ....+. ..++| +++|+||+|+.+
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~-~~~~~~----~~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTRE-HALLAF----TLGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHH-HHHHHH----HTTCCEEEEEEECGGGGT
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHH-HHHHHH----HcCCCeEEEEEEcccccc
Confidence 68999999999999888888999999999999999752 221 2222 112222 23555 899999999863
Q ss_pred Cccc----CHHHHHHHHHHcC-----CeEEEeeccCCCcHHHH
Q 028300 135 ERVV----SREEGIALAKEHG-----SLFLECSAKTRENVEQC 168 (211)
Q Consensus 135 ~~~v----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gv~~l 168 (211)
.... ...+...++..++ ++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 2211 1233445555554 68999999999998754
No 173
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.82 E-value=3.1e-22 Score=161.48 Aligned_cols=153 Identities=22% Similarity=0.277 Sum_probs=103.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIIL 91 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~ 91 (211)
+++.+|+++|++++|||||+++|....+.... ..+.+.......+...+..+.||||||+..|...+...+..+|++++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e-~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGE-AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTT-BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCcccc-CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 46789999999999999999999875542111 11111111111222233468999999999999988889999999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCc--ccCHHH--HHHHHHHcC--CeEEEeeccCC
Q 028300 92 VYDVTR---RETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSER--VVSREE--GIALAKEHG--SLFLECSAKTR 162 (211)
Q Consensus 92 v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~--~v~~~~--~~~~~~~~~--~~~~~~Sa~~~ 162 (211)
|+|+++ +++.+.+. .+ ...++|+++++||+|+.... .+.... ...+...++ ++++++||++|
T Consensus 81 VVda~~g~~~qT~e~l~-----~~----~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG 151 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAIQ-----HA----KAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAG 151 (501)
T ss_dssp EEETTTBSCTTTHHHHH-----HH----HHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTC
T ss_pred EeecccCccHHHHHHHH-----HH----HhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeec
Confidence 999988 44444332 11 13478999999999996432 111100 000111222 68999999999
Q ss_pred CcHHHHHHHHHH
Q 028300 163 ENVEQCFEQLAL 174 (211)
Q Consensus 163 ~gv~~l~~~i~~ 174 (211)
.|++++|++|..
T Consensus 152 ~gI~eLle~I~~ 163 (501)
T 1zo1_I 152 TGIDELLDAILL 163 (501)
T ss_dssp TTCTTHHHHTTT
T ss_pred cCcchhhhhhhh
Confidence 999999999864
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=1.2e-20 Score=144.42 Aligned_cols=159 Identities=23% Similarity=0.158 Sum_probs=101.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCC-----CCCCccc----------------------eeeE------------
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVD-----DLSPTIG----------------------VDFK------------ 51 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~-----~~~~~~~----------------------~~~~------------ 51 (211)
....++|+|+|.+|||||||+|+|++..+. .....++ +++.
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 456789999999999999999999988763 1111121 1100
Q ss_pred -----------EEEEEEC-CEEEEEEEEeCCChh-------------hhccchhhhccCCcEEE-EEEECCChhhHHHHH
Q 028300 52 -----------IKLLTVA-GKRLKLTIWDTAGQE-------------RFRTLTSSYYRGAQGII-LVYDVTRRETFTNLS 105 (211)
Q Consensus 52 -----------~~~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~ 105 (211)
...+.+. .....+.||||||.. .+......+++.++.++ +|+|+++..+..+..
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~ 182 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 182 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence 0000000 012579999999953 34455667788888666 799998754433332
Q ss_pred HHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHH--cC-CeEEEeeccCCCcHHHHHHHHHH
Q 028300 106 DVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKE--HG-SLFLECSAKTRENVEQCFEQLAL 174 (211)
Q Consensus 106 ~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~--~~-~~~~~~Sa~~~~gv~~l~~~i~~ 174 (211)
. +...+. ..+.|+++|+||+|+.+............... .+ .+++++||+++.|+++++++|.+
T Consensus 183 ~-~~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 183 K-IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp H-HHHHHC----TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHH
T ss_pred H-HHHHhC----CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHH
Confidence 2 444333 35789999999999975543222222110001 12 36889999999999999999877
No 175
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=7.1e-20 Score=137.58 Aligned_cols=127 Identities=19% Similarity=0.197 Sum_probs=84.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhcc-------
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYR------- 84 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~------- 84 (211)
...++|+++|.+|+|||||+++|++..+....+..+++.......+...+..+.||||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 3689999999999999999999999876333333333333223233223458999999998776554433332
Q ss_pred --CCcEEEEEEECCChhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccC
Q 028300 85 --GAQGIILVYDVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVS 139 (211)
Q Consensus 85 --~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~ 139 (211)
.+|++++|++++... +......|...+..... ....|+++|+||+|+.+.+...
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 170 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS 170 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence 789999999988654 33333225555554311 2235999999999996544433
No 176
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.80 E-value=7e-19 Score=148.02 Aligned_cols=164 Identities=14% Similarity=0.159 Sum_probs=108.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcccee--------------eE--------------------------
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVD--------------FK-------------------------- 51 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~--------------~~-------------------------- 51 (211)
...++|+|+|.+|+|||||+|+|++.........+++. ..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 46789999999999999999999988763332222221 00
Q ss_pred ---------------EEEEEECCEE--EEEEEEeCCChhhh---ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHH
Q 028300 52 ---------------IKLLTVAGKR--LKLTIWDTAGQERF---RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKE 111 (211)
Q Consensus 52 ---------------~~~~~~~~~~--~~~~l~D~~g~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 111 (211)
...+...... ..+.||||||.... ......+++++|++|+|+|+++..+..+... |...
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~-l~~~ 225 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRY-LENY 225 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHH-HHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHH-HHHH
Confidence 0000000000 35899999996653 3445678899999999999998877766654 5544
Q ss_pred hhhhccCCCccEEEEeecCCCCCCcccCH------H----HHHHH----H-HH--------cCCeEEEeecc--------
Q 028300 112 VDLYSTNQDCVKMLVGNKVDRDSERVVSR------E----EGIAL----A-KE--------HGSLFLECSAK-------- 160 (211)
Q Consensus 112 ~~~~~~~~~~p~viv~nK~Dl~~~~~v~~------~----~~~~~----~-~~--------~~~~~~~~Sa~-------- 160 (211)
+.. .+.|+++|+||+|+.....+.. + ..... . .. ...+++++||+
T Consensus 226 l~~----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~ 301 (695)
T 2j69_A 226 IKG----RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLK 301 (695)
T ss_dssp TTT----SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHH
T ss_pred HHh----hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhcc
Confidence 432 3678999999999854321111 0 11111 1 11 12369999999
Q ss_pred ------CCCcHHHHHHHHHHHHHhcc
Q 028300 161 ------TRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 161 ------~~~gv~~l~~~i~~~~~~~~ 180 (211)
++.|++++++++.+.+...+
T Consensus 302 ~~~~~~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 302 NPQADLDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp CTTCCCTTSSHHHHHHHHHHHHHHTH
T ss_pred CchhhhhccCHHHHHHHHHHHHHHhH
Confidence 99999999999988776544
No 177
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.79 E-value=3.7e-19 Score=134.27 Aligned_cols=127 Identities=20% Similarity=0.174 Sum_probs=85.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchh-------h--h
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTS-------S--Y 82 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~-------~--~ 82 (211)
...++|+++|.+|+|||||+|+|++..+....+..+++.....+.+......+.+|||||+.++..... . .
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 358999999999999999999999887644444455444444444434456799999999866543221 1 1
Q ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccC
Q 028300 83 YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVS 139 (211)
Q Consensus 83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~ 139 (211)
.+.+|+++||+|++.. ++......|...+..... ....|+++|+||+|+.+.+...
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~ 173 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP 173 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCC
Confidence 3478999999998753 333333235555543311 1237999999999997655433
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.79 E-value=3e-21 Score=159.59 Aligned_cols=146 Identities=18% Similarity=0.121 Sum_probs=80.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC--C----------------------------CCCCccceeeEEEEEEECCEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV--D----------------------------DLSPTIGVDFKIKLLTVAGKR 61 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~ 61 (211)
...++|+++|++++|||||+++|+.... . ......|++.......+....
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 4578999999999999999999964210 0 000123445444444555556
Q ss_pred EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHHhhhhccCCCcc-EEEEeecC
Q 028300 62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRR----------ETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKV 130 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~ 130 (211)
..+.||||||+.+|.......+..+|++|+|+|+++. ++.+.+. .+. ..++| +++|+||+
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~-----~~~----~lgip~iIvviNKi 325 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAY-----LLR----ALGISEIVVSVNKL 325 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHH-----HHH----HSSCCCEEEEEECG
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHH-----HHH----HcCCCeEEEEEecc
Confidence 7899999999999988888889999999999999853 2222221 122 23555 89999999
Q ss_pred CCCCCcccCH----HHHHHHH-HHcCC-----eEEEeeccCCCcHH
Q 028300 131 DRDSERVVSR----EEGIALA-KEHGS-----LFLECSAKTRENVE 166 (211)
Q Consensus 131 Dl~~~~~v~~----~~~~~~~-~~~~~-----~~~~~Sa~~~~gv~ 166 (211)
|+.+...... .+...+. ...++ +++++||++|.|+.
T Consensus 326 Dl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 326 DLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 9865322111 2233333 33343 79999999999997
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.79 E-value=1.4e-18 Score=141.89 Aligned_cols=118 Identities=15% Similarity=0.197 Sum_probs=79.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC--CC-------------------CCCccceeeEEEEEEECCEEEEEEEEeCC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV--DD-------------------LSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 70 (211)
.+..+|+++|++|+|||||+++|+...- .. ...+.+.+.......+......+.|||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 4578999999999999999999986321 00 00122222222222233345789999999
Q ss_pred ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~ 135 (211)
|+.+|.......++.+|++|+|+|+++...... .. +...+ ...++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~-~~~~~----~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RK-LMEVT----RLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HH-HHHHH----TTTTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HH-HHHHH----HHcCCCEEEEEcCcCCccc
Confidence 999988878888999999999999987532221 22 22222 2358899999999998643
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.78 E-value=1.5e-18 Score=145.49 Aligned_cols=118 Identities=12% Similarity=0.130 Sum_probs=82.2
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCC-CCCC----------------ccceeeEEEEEEECCEEEEEEEEeCCCh
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSP----------------TIGVDFKIKLLTVAGKRLKLTIWDTAGQ 72 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~l~D~~g~ 72 (211)
..+...+|+++|+.|+|||||+++|++.... .... ..+.++......+....+.+++|||||+
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 3456789999999999999999999854321 0000 1123333333333334578999999999
Q ss_pred hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 73 ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
.+|...+...++.+|++++|+|+++....... . +...+.. .++|+++++||+|+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~-~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTE-R-AWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-H-HHHHHHH----TTCCEEEEEECGGGC
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHH-H-HHHHHHH----ccCCEEEEecCCchh
Confidence 99988888899999999999998875433222 2 3333332 378999999999986
No 181
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.78 E-value=1.8e-18 Score=137.02 Aligned_cols=160 Identities=22% Similarity=0.207 Sum_probs=107.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh----hccchhh---hccCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER----FRTLTSS---YYRGA 86 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~----~~~~~~~---~~~~~ 86 (211)
.|+++|++|||||||++.+.+... ..+..+ ........+...+ ...+.+||+||..+ +..+... .+..+
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ft-Tl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFT-TLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTC-SSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccc-eecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 479999999999999999997753 111111 1111111223222 25688999999632 2222222 24578
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHhhhhcc-CCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300 87 QGIILVYDVTRRETFTNLSDVWAKEVDLYST-NQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV 165 (211)
Q Consensus 87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 165 (211)
+.+++++|++ ...+.++.. |...+..+.. ....|.++|+||+|+... .............+.+++.+||+++.|+
T Consensus 237 ~~lL~vvDls-~~~~~~ls~-g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGL 312 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred HhhhEEeCCc-cCCHHHHHH-HHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCH
Confidence 9999999998 556666665 5555544311 236799999999998653 2233344445556789999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 028300 166 EQCFEQLALKIMEVPS 181 (211)
Q Consensus 166 ~~l~~~i~~~~~~~~~ 181 (211)
++++++|.+.+.+.+.
T Consensus 313 ~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 313 PALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999987654
No 182
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.77 E-value=2e-18 Score=145.24 Aligned_cols=120 Identities=17% Similarity=0.248 Sum_probs=82.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhCC--CCC---C------C------CccceeeEEEEEEECCEEEEEEEEeCCC
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISSS--VDD---L------S------PTIGVDFKIKLLTVAGKRLKLTIWDTAG 71 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~~--~~~---~------~------~~~~~~~~~~~~~~~~~~~~~~l~D~~g 71 (211)
....+..+|+|+|++|+|||||+++|+... +.. . . ...+.+.......+......+.||||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG 86 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPG 86 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCS
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcC
Confidence 345678999999999999999999998421 100 0 0 0112222211122222347899999999
Q ss_pred hhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 72 QERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
+.+|...+...++.+|++|+|+|+++..+...... |... . ..++|+++|+||+|+..
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~-~----~~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQA-E----KYKVPRIAFANKMDKTG 143 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHH-H----HTTCCEEEEEECTTSTT
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHH-H----HcCCCEEEEEECCCccc
Confidence 99988888899999999999999998776665544 5432 2 23899999999999854
No 183
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.77 E-value=1e-18 Score=134.67 Aligned_cols=166 Identities=17% Similarity=0.158 Sum_probs=99.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCC-CC----CCCccceeeEEE--------------------------------
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSV-DD----LSPTIGVDFKIK-------------------------------- 53 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~----~~~~~~~~~~~~-------------------------------- 53 (211)
.....+|+|+|.+|+|||||+|+|++..+ +. ....++......
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIRE 100 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHH
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHH
Confidence 34567999999999999999999998876 21 111111001100
Q ss_pred ---------------------EEE-ECCEEEEEEEEeCCChhh-------------hccchhhhccCCcEEEEEEECCCh
Q 028300 54 ---------------------LLT-VAGKRLKLTIWDTAGQER-------------FRTLTSSYYRGAQGIILVYDVTRR 98 (211)
Q Consensus 54 ---------------------~~~-~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~ 98 (211)
.+. .......+.||||||... +......++..+|++++|+|..+.
T Consensus 101 ~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~ 180 (315)
T 1jwy_B 101 EIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANT 180 (315)
T ss_dssp HHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSS
T ss_pred HHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCc
Confidence 000 001124689999999643 344566788999999999997432
Q ss_pred hhH-HHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec---cC---CCcHHHHHHH
Q 028300 99 ETF-TNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA---KT---RENVEQCFEQ 171 (211)
Q Consensus 99 ~s~-~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa---~~---~~gv~~l~~~ 171 (211)
... ..... +...+. ..+.|+++|+||+|+........+........++..++++++ .+ +.|+.++++.
T Consensus 181 ~~~~~~~~~-i~~~~~----~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 181 DLANSDALQ-LAKEVD----PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp CSTTCSHHH-HHHHHC----SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred chhhhHHHH-HHHHhC----CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 211 11111 233332 357899999999999755432222221100112245666554 44 7899999999
Q ss_pred HHHHHHhccc
Q 028300 172 LALKIMEVPS 181 (211)
Q Consensus 172 i~~~~~~~~~ 181 (211)
+.+.+.....
T Consensus 256 ~~~~~~~~~~ 265 (315)
T 1jwy_B 256 EILYFKNHPI 265 (315)
T ss_dssp HHHHHHTCTT
T ss_pred HHHHHhCCCc
Confidence 8887766544
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.75 E-value=6.1e-19 Score=138.25 Aligned_cols=155 Identities=16% Similarity=0.133 Sum_probs=99.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccc---eee---------------------------------------
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIG---VDF--------------------------------------- 50 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~---~~~--------------------------------------- 50 (211)
-.+|+|+|++|||||||+++|.+..+ +....... +..
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 34999999999999999999999876 22111110 000
Q ss_pred ----------EEEEEEE-CCEEEEEEEEeCCChhhh-------------ccchhhhccCCcEEEEEEECCChhhHHHHHH
Q 028300 51 ----------KIKLLTV-AGKRLKLTIWDTAGQERF-------------RTLTSSYYRGAQGIILVYDVTRRETFTNLSD 106 (211)
Q Consensus 51 ----------~~~~~~~-~~~~~~~~l~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 106 (211)
......+ ......+.+|||||...+ ......++.++|++|+|+|..+.+.....
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~-- 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD-- 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH--
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH--
Confidence 0000000 011235899999997654 45567788999999999987654322211
Q ss_pred HHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHH
Q 028300 107 VWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 107 ~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
|...+... ...+.|+++|+||+|+.+......+....+...++.+|+.+++..+.++++.+..+
T Consensus 192 -~~~l~~~~-~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 192 -AIKISREV-DPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp -HHHHHHHS-CTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred -HHHHHHHh-cccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 33333322 34578999999999997655544444433334466789999999988887765543
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.75 E-value=1.5e-18 Score=137.09 Aligned_cols=83 Identities=23% Similarity=0.261 Sum_probs=47.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCcccee----eEEEEE-------------------EECC-EEEEEEEEeCC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVD----FKIKLL-------------------TVAG-KRLKLTIWDTA 70 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~----~~~~~~-------------------~~~~-~~~~~~l~D~~ 70 (211)
++|+++|.+|||||||+|+|.+... .....++++ .....+ .+.+ ....+.|||+|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 5899999999999999999998763 211111111 111111 1122 25789999999
Q ss_pred Chhh----hccchh---hhccCCcEEEEEEECCCh
Q 028300 71 GQER----FRTLTS---SYYRGAQGIILVYDVTRR 98 (211)
Q Consensus 71 g~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 98 (211)
|... ...+.. ..++.+|++++|+|+++.
T Consensus 80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 9753 222222 456899999999999875
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.74 E-value=1.3e-18 Score=133.06 Aligned_cols=163 Identities=18% Similarity=0.267 Sum_probs=85.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhC-CCC-CCCC------ccceeeEEEEEEE--CCEEEEEEEEeCCCh-------h
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISS-SVD-DLSP------TIGVDFKIKLLTV--AGKRLKLTIWDTAGQ-------E 73 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~-~~~-~~~~------~~~~~~~~~~~~~--~~~~~~~~l~D~~g~-------~ 73 (211)
....++|+++|++|+|||||+++|++. .+. ...+ +.........+.+ .+....+++||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 356789999999999999999998865 332 1111 1111111122222 233468899999997 4
Q ss_pred hhccchh-------hhcc-------------CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 74 RFRTLTS-------SYYR-------------GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 74 ~~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
.+..+.. .+++ .+++++|+.+.+.. +++.....++..+ ....|+++|+||.|+.
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~~~l~~l-----~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDVAFMKAI-----HNKVNIVPVIAKADTL 168 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHHHHHHHH-----TTTSCEEEEECCGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHHHHHHHH-----HhcCCEEEEEEeCCCC
Confidence 4443332 2222 23445555554321 2222221122222 2467999999999987
Q ss_pred CCccc--CHHHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 134 SERVV--SREEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 134 ~~~~v--~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
..+++ ..+++.+++..++++++++||+++ +++++|.++.+.+.+..
T Consensus 169 ~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 169 TLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 65443 235667778888999999999999 99999999999887654
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.74 E-value=8e-17 Score=135.66 Aligned_cols=118 Identities=15% Similarity=0.168 Sum_probs=82.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCC--CCCC---C------------CccceeeEEEE--EEEC-----CEEEEEEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSS--VDDL---S------------PTIGVDFKIKL--LTVA-----GKRLKLTI 66 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~--~~~~---~------------~~~~~~~~~~~--~~~~-----~~~~~~~l 66 (211)
.++..+|+|+|+.|+|||||+++|+... +... . ...+.+..... +.+. +..+.+.|
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4567899999999999999999997531 1110 0 01222322222 2221 23388999
Q ss_pred EeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
|||||+.+|...+...++.+|++|+|+|+++......... |... ...++|+++++||+|+..
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~-~~~~-----~~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETV-WRQA-----NKYKVPRIAFVNKMDRMG 148 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHH-HHHH-----HHcCCCEEEEEeCCCccc
Confidence 9999999998888889999999999999998654433332 4322 234789999999999854
No 188
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.74 E-value=2.1e-17 Score=139.04 Aligned_cols=119 Identities=16% Similarity=0.210 Sum_probs=81.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhh--CCCCC---CC------C------ccceeeEEEEEEECCEEEEEEEEeCCChh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFIS--SSVDD---LS------P------TIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~--~~~~~---~~------~------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (211)
.++..+|+|+|++|+|||||+++|+. +.+.. .. . ..+++.......+......+.||||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 45678999999999999999999985 22210 00 0 11222111111222234679999999999
Q ss_pred hhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300 74 RFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~ 135 (211)
++...+...++.+|++|+|+|+++..+...... |.. +.. .++|+++|+||+|+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~-~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQ-ATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHH-HHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHH-HHH----cCCCEEEEEECCCcccc
Confidence 888888889999999999999998766555543 443 222 37899999999998643
No 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=5.6e-18 Score=134.22 Aligned_cols=162 Identities=17% Similarity=0.235 Sum_probs=82.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCC-CCCC------ccceeeEEEEEEE--CCEEEEEEEEeCCChhhhc----
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSP------TIGVDFKIKLLTV--AGKRLKLTIWDTAGQERFR---- 76 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~-~~~~------~~~~~~~~~~~~~--~~~~~~~~l~D~~g~~~~~---- 76 (211)
-....++|+|+|++|+|||||++.|++..+. .... ..........+.+ .+....+++||++|...+.
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 3456688999999999999999999987652 1110 0011111112222 2223478999999965431
Q ss_pred ---c------------------chhhhccCCcEEEEEEECCCh-hhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 77 ---T------------------LTSSYYRGAQGIILVYDVTRR-ETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 77 ---~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
. +...++..+++.+++|..+.- .++......|+..+. .++|+++|+||+|+..
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLT 181 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCcc
Confidence 1 112344555544444443322 233333323555543 3789999999999976
Q ss_pred CcccCH--HHHHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHH
Q 028300 135 ERVVSR--EEGIALAKEHGSLFLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 135 ~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
.+++.. ..+...+..++++++++|+.++.++.++|..+.+.+
T Consensus 182 ~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 182 PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 555544 556677778899999999999999998887776643
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=6.4e-18 Score=129.21 Aligned_cols=132 Identities=18% Similarity=0.124 Sum_probs=102.9
Q ss_pred HHHHHHhhCCC--CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChh-hHHHHH
Q 028300 29 SLLVSFISSSV--DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRE-TFTNLS 105 (211)
Q Consensus 29 sli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 105 (211)
+|+.++..+.| ..+.||.|..+. .. ..... .+.+||+ +++++.+++.+++++|++|+|||+++++ ++..+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 67888887777 457788885544 22 22222 7899999 8889999999999999999999999987 676666
Q ss_pred HHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcC--CeEEEeeccCCCcHHHHHHHHH
Q 028300 106 DVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHG--SLFLECSAKTRENVEQCFEQLA 173 (211)
Q Consensus 106 ~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~gv~~l~~~i~ 173 (211)
. |+..+.. .++|+++|+||+|+.+.+.+ ++...++..++ ++++++||+++.|++++|.++.
T Consensus 106 ~-~l~~~~~----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 K-FLVLAEK----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp H-HHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred H-HHHHHHH----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 6 7776653 47999999999999655433 34556666666 8999999999999999997764
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.70 E-value=1.1e-17 Score=130.79 Aligned_cols=105 Identities=11% Similarity=0.102 Sum_probs=69.9
Q ss_pred EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH
Q 028300 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR 140 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~ 140 (211)
++.+.||||||... .....+..+|++++|+|....+.+..+. . .....|.++|+||+|+........
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--------~--~~~~~p~ivVlNK~Dl~~~~~~~~ 237 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--------K--GVLELADIVVVNKADGEHHKEARL 237 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--------T--TSGGGCSEEEEECCCGGGHHHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--------H--hHhhcCCEEEEECCCCcChhHHHH
Confidence 36789999999432 2334458899999999987654332211 0 123469999999999854322211
Q ss_pred --HHHHHHHHH-------cCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300 141 --EEGIALAKE-------HGSLFLECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 141 --~~~~~~~~~-------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
.+....... ++.+++.+||+++.|+++++++|.+.+..
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 111111111 25789999999999999999999887755
No 192
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.68 E-value=1.1e-15 Score=118.69 Aligned_cols=145 Identities=17% Similarity=0.190 Sum_probs=89.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC--CCCC-CccceeeEEEEEEECCE---------------EEEEEEEeCCChhhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV--DDLS-PTIGVDFKIKLLTVAGK---------------RLKLTIWDTAGQERF 75 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~--~~~~-~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~ 75 (211)
.++|+++|.||+|||||+|+|.+..+ ..+. .|...+.. .+.+.+. +..+.+||+||...+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 47899999999999999999998764 1111 12222221 1222221 257999999997654
Q ss_pred c----cc---hhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHH---------------------------
Q 028300 76 R----TL---TSSYYRGAQGIILVYDVTRR----------ETFTNLSDVWAKE--------------------------- 111 (211)
Q Consensus 76 ~----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~--------------------------- 111 (211)
. .+ ....++.+|++++|+|+++. +.+.++.. +..+
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~-i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~ 158 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDT-INTELALADLDSCERAIQRLQKRAKGGDKEA 158 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHH-HHHHHHhhhHHHHhhHHHHHHHHhhccchhH
Confidence 2 22 23357899999999999862 22333221 1111
Q ss_pred -------------hh-------------------hhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEeec
Q 028300 112 -------------VD-------------------LYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECSA 159 (211)
Q Consensus 112 -------------~~-------------------~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 159 (211)
+. .+.....+|+++++|+.|..-........++.++...+++++++||
T Consensus 159 ~~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA 238 (363)
T 1jal_A 159 KFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCA 238 (363)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEech
Confidence 10 0112335899999999996422223345566777778899999996
Q ss_pred cC
Q 028300 160 KT 161 (211)
Q Consensus 160 ~~ 161 (211)
+.
T Consensus 239 ~~ 240 (363)
T 1jal_A 239 AI 240 (363)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 193
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.68 E-value=4.8e-18 Score=132.79 Aligned_cols=158 Identities=23% Similarity=0.168 Sum_probs=93.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCC-C----CCCccce----------------------eeE-------------
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVD-D----LSPTIGV----------------------DFK------------- 51 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~-~----~~~~~~~----------------------~~~------------- 51 (211)
....+|+|+|.+|||||||+|+|++..+. . ....++. ++.
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34579999999999999999999988763 1 1111210 000
Q ss_pred ----------EEEEEEC-CEEEEEEEEeCCChh-------------hhccchhhhccCCc-EEEEEEECCChhhHHHHHH
Q 028300 52 ----------IKLLTVA-GKRLKLTIWDTAGQE-------------RFRTLTSSYYRGAQ-GIILVYDVTRRETFTNLSD 106 (211)
Q Consensus 52 ----------~~~~~~~-~~~~~~~l~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~ 106 (211)
...+.+. .....+.||||||.. .+..+...++...+ ++++|.|++....-.+...
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0001110 113569999999953 33445556666565 5555666654322122211
Q ss_pred HHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHH--HHHcC-CeEEEeeccCCCcHHHHHHHHHH
Q 028300 107 VWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIAL--AKEHG-SLFLECSAKTRENVEQCFEQLAL 174 (211)
Q Consensus 107 ~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~--~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~ 174 (211)
+...+ ...+.|+++|+||+|+.+............ ....+ .+++.+||+++.|++++++++.+
T Consensus 189 -i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 -VAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp -HHHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred -HHHHh----CcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 33332 345889999999999965433111111100 00123 25788999999999999998876
No 194
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.66 E-value=7.5e-16 Score=126.30 Aligned_cols=118 Identities=14% Similarity=0.153 Sum_probs=80.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCC---------------------CCCCCCccceeeEEEEEEECCEEEEEEEEeCC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSS---------------------VDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTA 70 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 70 (211)
.+.-+|+|+|+.++|||||..+|+... +.......|.+.......+...+..++|+|||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 345789999999999999999996211 11111122333332233333355789999999
Q ss_pred ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCC
Q 028300 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSE 135 (211)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~ 135 (211)
|+.+|..-....++-+|++|+|+|+.+.-....... |.... ..++|.++++||+|....
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v-~~~a~-----~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKL-MDVCR-----MRATPVMTFVNKMDREAL 167 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHH-HHHHH-----HTTCCEEEEEECTTSCCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHH-HHHHH-----HhCCceEEEEecccchhc
Confidence 999999989999999999999999987433222222 43332 348999999999997543
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.65 E-value=2.8e-18 Score=125.98 Aligned_cols=60 Identities=22% Similarity=0.159 Sum_probs=46.6
Q ss_pred CccEEEEeecCCCCCCcccCHHHHHHHHHHc--CCeEEEeeccCCCcHHHHHHHHHHHHHhc
Q 028300 120 DCVKMLVGNKVDRDSERVVSREEGIALAKEH--GSLFLECSAKTRENVEQCFEQLALKIMEV 179 (211)
Q Consensus 120 ~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 179 (211)
..|.++|+||+|+.+...+..++...++..+ +++++++||+++.|++++|++|.+.+...
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 4677999999998644334556666666554 57899999999999999999998877543
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.65 E-value=7.3e-17 Score=118.02 Aligned_cols=155 Identities=16% Similarity=0.148 Sum_probs=93.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhCCCCCCC-----Cccce----------eeEEEEEEE----------------CCEE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISSSVDDLS-----PTIGV----------DFKIKLLTV----------------AGKR 61 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~~~~~~~-----~~~~~----------~~~~~~~~~----------------~~~~ 61 (211)
...+|+++|.+|||||||+++|......... ...+. ......+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4578999999999999999999865321100 00000 000011110 0123
Q ss_pred EEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHH
Q 028300 62 LKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSRE 141 (211)
Q Consensus 62 ~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~ 141 (211)
..+.+||++|...... .+....+.+++|+|+++.... ... +.. . .+.|.++|+||+|+.+.......
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~-~~~---~----~~~~~iiv~NK~Dl~~~~~~~~~ 175 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEK-HPE---I----FRVADLIVINKVALAEAVGADVE 175 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHH-CHH---H----HHTCSEEEEECGGGHHHHTCCHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhh-hhh---h----hhcCCEEEEecccCCcchhhHHH
Confidence 4678899888411110 111256889999998865321 111 111 1 25788999999998543223455
Q ss_pred HHHHHHHHc--CCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 142 EGIALAKEH--GSLFLECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 142 ~~~~~~~~~--~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
+........ .++++++||+++.|++++|++|.+.+....
T Consensus 176 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 176 KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 555555543 478999999999999999999998775543
No 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.63 E-value=9.1e-16 Score=125.92 Aligned_cols=123 Identities=20% Similarity=0.243 Sum_probs=82.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCC--CCCCccceeeEEEEEEECC------E----------------E----
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVD--DLSPTIGVDFKIKLLTVAG------K----------------R---- 61 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~------~----------------~---- 61 (211)
.....++|+|+|.+|+|||||+|+|++..+. ...+.+.++.......-+. . +
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~ 140 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFL 140 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCC
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccc
Confidence 3456789999999999999999999998763 2222222222110000000 0 0
Q ss_pred -------------EEEEEEeCCChhh-----------hccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhcc
Q 028300 62 -------------LKLTIWDTAGQER-----------FRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYST 117 (211)
Q Consensus 62 -------------~~~~l~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~ 117 (211)
..+.||||||... +...+..++..+|++|+|+|+++......... |...+..
T Consensus 141 ~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~-~l~~l~~--- 216 (550)
T 2qpt_A 141 NRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSE-AIGALRG--- 216 (550)
T ss_dssp TTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHH-HHHHTTT---
T ss_pred ccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHH-HHHHHHh---
Confidence 2589999999764 44556677889999999999987544444444 5555442
Q ss_pred CCCccEEEEeecCCCCCCcc
Q 028300 118 NQDCVKMLVGNKVDRDSERV 137 (211)
Q Consensus 118 ~~~~p~viv~nK~Dl~~~~~ 137 (211)
.+.|+++|+||+|+....+
T Consensus 217 -~~~pvilVlNK~Dl~~~~e 235 (550)
T 2qpt_A 217 -HEDKIRVVLNKADMVETQQ 235 (550)
T ss_dssp -CGGGEEEEEECGGGSCHHH
T ss_pred -cCCCEEEEEECCCccCHHH
Confidence 3689999999999865433
No 198
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.62 E-value=2.7e-15 Score=112.50 Aligned_cols=174 Identities=19% Similarity=0.065 Sum_probs=100.0
Q ss_pred CCCCCCCCceeeEEEEEcCCCCcHHHHHHHHh-----hCCC--CCCCCc-cce------------eeEEE---EEE----
Q 028300 4 SSGQSNSYDLSFKILLIGDSGVGKSSLLVSFI-----SSSV--DDLSPT-IGV------------DFKIK---LLT---- 56 (211)
Q Consensus 4 ~~~~~~~~~~~~~I~v~G~~~~GKssli~~l~-----~~~~--~~~~~~-~~~------------~~~~~---~~~---- 56 (211)
+-+...-....+.+++.|.+||||||++++|. +... -...+. ... +.... ...
T Consensus 4 ~~~~~~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (262)
T 1yrb_A 4 SHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGA 83 (262)
T ss_dssp CCCCCCTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHH
T ss_pred ccccccCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCc
Confidence 34455667788999999999999999999997 3331 000000 000 00000 000
Q ss_pred --------------------ECCEEEEEEEEeCCChhhhccchh------hhccCCcEEEEEEECCChhhHHHHHHHHHH
Q 028300 57 --------------------VAGKRLKLTIWDTAGQERFRTLTS------SYYRGAQGIILVYDVTRRETFTNLSDVWAK 110 (211)
Q Consensus 57 --------------------~~~~~~~~~l~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 110 (211)
.-...+.+.||||||..+...... ..+.. +++++++|+....+.......+..
T Consensus 84 ~~~~~~~~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~ 162 (262)
T 1yrb_A 84 IVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFF 162 (262)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHH
T ss_pred EEecHHHHhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHH
Confidence 000125789999999776533211 23456 889999987643332232221111
Q ss_pred HhhhhccCCCccEEEEeecCCCCCCcccCH--------HHHH-H-----------------HHHHcC--CeEEEeeccCC
Q 028300 111 EVDLYSTNQDCVKMLVGNKVDRDSERVVSR--------EEGI-A-----------------LAKEHG--SLFLECSAKTR 162 (211)
Q Consensus 111 ~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~--------~~~~-~-----------------~~~~~~--~~~~~~Sa~~~ 162 (211)
... .....+.|+++|+||+|+.....+.. .... . ++..++ ++++++||+++
T Consensus 163 ~~~-~~~~~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~ 241 (262)
T 1yrb_A 163 ALL-IDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTR 241 (262)
T ss_dssp HHH-HHHHHTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTC
T ss_pred HHH-HhcccCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCc
Confidence 111 11223689999999999865432110 0000 0 023333 47999999999
Q ss_pred CcHHHHHHHHHHHHHhc
Q 028300 163 ENVEQCFEQLALKIMEV 179 (211)
Q Consensus 163 ~gv~~l~~~i~~~~~~~ 179 (211)
.|+++++++|.+.+...
T Consensus 242 ~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 242 EGFEDLETLAYEHYCTC 258 (262)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccc
Confidence 99999999998877544
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.61 E-value=2.4e-15 Score=117.39 Aligned_cols=154 Identities=16% Similarity=0.134 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC--CCCCC-ccceeeEEEEEEECC-------------------EEEEEEEEeCCCh
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV--DDLSP-TIGVDFKIKLLTVAG-------------------KRLKLTIWDTAGQ 72 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~--~~~~~-~~~~~~~~~~~~~~~-------------------~~~~~~l~D~~g~ 72 (211)
++|+++|.+|+|||||+++|.+... ..+.. |...+.... .+.+ ....+.+||+||.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5799999999999999999997642 11111 111222111 2211 2457999999997
Q ss_pred hhhc----cc---hhhhccCCcEEEEEEECCCh----------hhHHHHHHHHHHHh-----------------------
Q 028300 73 ERFR----TL---TSSYYRGAQGIILVYDVTRR----------ETFTNLSDVWAKEV----------------------- 112 (211)
Q Consensus 73 ~~~~----~~---~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~----------------------- 112 (211)
.... .+ ....++.+|++++|+|+++. +.+.++.. +..++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~-i~~EL~~~d~~~l~k~~~~~~~~~~~~~ 158 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEV-VETELLLADLATLERRLERLRKEARADR 158 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCG
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHH-HhhHHHHccHHHHHHHHHHHHhhhccch
Confidence 6542 12 23357899999999999862 12222111 10000
Q ss_pred ----------------h-------------------hhccCCCccEEEEeecCCCC--CC-cccCHHHHHHHHHHcCCeE
Q 028300 113 ----------------D-------------------LYSTNQDCVKMLVGNKVDRD--SE-RVVSREEGIALAKEHGSLF 154 (211)
Q Consensus 113 ----------------~-------------------~~~~~~~~p~viv~nK~Dl~--~~-~~v~~~~~~~~~~~~~~~~ 154 (211)
. .+.....+|+++++||.|.. +. ........+.++...++++
T Consensus 159 ~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~v 238 (368)
T 2dby_A 159 ERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEV 238 (368)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeE
Confidence 0 00012247999999999842 21 1234556677777788999
Q ss_pred EEeeccCCCcHHHHHHH
Q 028300 155 LECSAKTRENVEQCFEQ 171 (211)
Q Consensus 155 ~~~Sa~~~~gv~~l~~~ 171 (211)
+++||+...++.++.+.
T Consensus 239 v~iSAk~E~el~eL~~~ 255 (368)
T 2dby_A 239 VVVSARLEAELAELSGE 255 (368)
T ss_dssp EEECHHHHHHHHTSCHH
T ss_pred EEeechhHHHHHHhchH
Confidence 99999885555544433
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.60 E-value=5.7e-15 Score=115.02 Aligned_cols=103 Identities=9% Similarity=0.069 Sum_probs=62.6
Q ss_pred EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH
Q 028300 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR 140 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~ 140 (211)
++.+.|+||+|.... .......+|++++|+|+++.+....+.. . ....|.++|+||+|+.+.....
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~----~------il~~~~ivVlNK~Dl~~~~~~~- 231 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR----G------IIEMADLVAVTKSDGDLIVPAR- 231 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC----------------------CCSCSEEEECCCSGGGHHHHH-
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH----H------HHhcCCEEEEeeecCCCchhHH-
Confidence 356789999995321 2344678999999999987543221111 0 1245789999999985321111
Q ss_pred HHHHHHHH----------HcCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300 141 EEGIALAK----------EHGSLFLECSAKTRENVEQCFEQLALKIM 177 (211)
Q Consensus 141 ~~~~~~~~----------~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 177 (211)
.....+.. .+..+++.+||+++.|+++++++|.+.+.
T Consensus 232 ~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 232 RIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 01111211 12457899999999999999999988764
No 201
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.60 E-value=3e-15 Score=128.41 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=84.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCC--C----------C-----C--CCccceeeEEEEEE------------ECCE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSV--D----------D-----L--SPTIGVDFKIKLLT------------VAGK 60 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~--~----------~-----~--~~~~~~~~~~~~~~------------~~~~ 60 (211)
.+..+|+|+|++++|||||+++|+...- . . . ..|.........+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 4568999999999999999999986421 0 0 0 01111112222222 1334
Q ss_pred EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
.+.+.||||||+.+|...+...++.+|++|+|+|+++..++..... |.... ..++|+++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~-~~~~~-----~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETV-LRQAL-----GERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHH-HHHHH-----HTTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH-HHHHH-----HcCCCeEEEEECCCcc
Confidence 7899999999999999889999999999999999999877766544 54332 2478999999999985
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.58 E-value=5.1e-16 Score=120.70 Aligned_cols=104 Identities=15% Similarity=0.121 Sum_probs=65.7
Q ss_pred EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH
Q 028300 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR 140 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~ 140 (211)
++.+.||||||...... .....+|++++|+|++..+.+.. +.. ...+.|.++|+||+|+........
T Consensus 148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~--------l~~--~~~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQG--------IKK--GLMEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CC--------CCH--HHHHHCSEEEECCCCTTCHHHHHH
T ss_pred CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHH--------HHH--hhhcccCEEEEECCCCCChHHHHH
Confidence 35799999999654332 24588999999999976532211 110 012568899999999864322211
Q ss_pred --HHHHHHHHHc-------CCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300 141 --EEGIALAKEH-------GSLFLECSAKTRENVEQCFEQLALKIM 177 (211)
Q Consensus 141 --~~~~~~~~~~-------~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 177 (211)
.+........ ..+++++||+++.|+++++++|.+.+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 1122211221 357899999999999999999988765
No 203
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.56 E-value=4.6e-14 Score=110.18 Aligned_cols=155 Identities=14% Similarity=0.069 Sum_probs=93.3
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhc-------cchhhhcc
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFR-------TLTSSYYR 84 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~ 84 (211)
+-..+|+++|.||||||||+|+|.+... .....++++.......+...+..++|+|+||.-... ......++
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~-~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTES-EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCC-CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCC-cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 3456999999999999999999998664 223334455444443333344678899999953211 11234568
Q ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHhhhh-ccCCCccEEEEeecCCCCC--------CcccCHHHHHHHHHHcCCeEE
Q 028300 85 GAQGIILVYDVTRRETFTNLSDVWAKEVDLY-STNQDCVKMLVGNKVDRDS--------ERVVSREEGIALAKEHGSLFL 155 (211)
Q Consensus 85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~p~viv~nK~Dl~~--------~~~v~~~~~~~~~~~~~~~~~ 155 (211)
.+|++++|+|++++.. .... +..++... ......|.++++||.|... ......++.+.....+.+.--
T Consensus 149 ~ad~il~vvD~~~p~~--~~~~-i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~k 225 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLH--HKQI-IEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSA 225 (376)
T ss_dssp HCSEEEEEEETTSHHH--HHHH-HHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSE
T ss_pred hcCccccccccCccHH--HHHH-HHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCC
Confidence 8999999999998743 2222 33333322 1234678899999999632 123445555555555544322
Q ss_pred EeeccCCCcHHHHHH
Q 028300 156 ECSAKTRENVEQCFE 170 (211)
Q Consensus 156 ~~Sa~~~~gv~~l~~ 170 (211)
++--..+...+++.+
T Consensus 226 pv~~~~nv~eddl~d 240 (376)
T 4a9a_A 226 EIAFRCDATVDDLID 240 (376)
T ss_dssp EEEECSCCCHHHHHH
T ss_pred CeeecccCCHHHHHH
Confidence 222234445555443
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.53 E-value=1.3e-15 Score=127.10 Aligned_cols=114 Identities=17% Similarity=0.226 Sum_probs=79.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCC--CCC---------CCC------ccceeeEEEEEEECCEEEEEEEEeCCChhhhcc
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSS--VDD---------LSP------TIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT 77 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~--~~~---------~~~------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~ 77 (211)
.||+|+|+.++|||||..+|+... ... +.. ..|.+.......+...+..++|+|||||.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 378999999999999999997311 110 000 113444444444555667899999999999998
Q ss_pred chhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 78 LTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
.....++-+|++|+|+|+.+.-.... ...|..... .++|.++++||+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~-----~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRK-----MGIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHH-----HTCSCEECCEECCSSS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHH-----cCCCeEEEEecccccc
Confidence 89999999999999999987422222 222433322 3789999999999743
No 205
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.50 E-value=3.5e-13 Score=113.98 Aligned_cols=117 Identities=15% Similarity=0.161 Sum_probs=78.5
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCC--------CC---------CCCCccceeeEE--EEEEEC-----CEEEEEEE
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSS--------VD---------DLSPTIGVDFKI--KLLTVA-----GKRLKLTI 66 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~--------~~---------~~~~~~~~~~~~--~~~~~~-----~~~~~~~l 66 (211)
.++--+|+|+|+.++|||||..+|+... .. ......|.+... ..+.+. ..++.++|
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 4566799999999999999999997211 10 011122333322 222332 23688999
Q ss_pred EeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC
Q 028300 67 WDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD 133 (211)
Q Consensus 67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~ 133 (211)
+|||||-+|.......++-+|++|+|+|+.+.-......- |..... .++|.++++||+|..
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v-~~~a~~-----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV-WRQANK-----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH-----HTCCEEEEEECSSST
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH-HHHHHH-----cCCCeEEEEcccccc
Confidence 9999999999889999999999999999887432222222 444332 389999999999974
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.49 E-value=1.7e-14 Score=121.22 Aligned_cols=158 Identities=21% Similarity=0.130 Sum_probs=96.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccce-------------------------------------------
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGV------------------------------------------- 48 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~------------------------------------------- 48 (211)
....+|+|+|.+++|||||+|+|++..+-.......+
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 4566999999999999999999998776111110000
Q ss_pred -------eeE--EEEEEECCEEEEEEEEeCCChhh-------------hccchhhhc-cCCcEEEEEEECCChhhHHHHH
Q 028300 49 -------DFK--IKLLTVAGKRLKLTIWDTAGQER-------------FRTLTSSYY-RGAQGIILVYDVTRRETFTNLS 105 (211)
Q Consensus 49 -------~~~--~~~~~~~~~~~~~~l~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~ 105 (211)
... ...+...+ ...+.|+||||... +..+...++ ..+|++++|+|++......+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 000 01111111 12578999999432 222333333 5789999999998753333322
Q ss_pred HHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHH--HcC-CeEEEeeccCCCcHHHHHHHHHHH
Q 028300 106 DVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAK--EHG-SLFLECSAKTRENVEQCFEQLALK 175 (211)
Q Consensus 106 ~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~--~~~-~~~~~~Sa~~~~gv~~l~~~i~~~ 175 (211)
. +...+. ..+.|+++|+||+|+.+.............. ..+ .+++.+||+++.|++++++.+.+.
T Consensus 208 ~-ll~~L~----~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 K-IAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp H-HHHHHC----TTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred H-HHHHHH----hcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 2 333333 4478999999999997654433221110000 012 357889999999999999998873
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.45 E-value=2.9e-13 Score=103.43 Aligned_cols=96 Identities=23% Similarity=0.213 Sum_probs=76.0
Q ss_pred hhhhccchhhhccCCcEEEEEEECCChh-hHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC-HHHHHHHHHH
Q 028300 72 QERFRTLTSSYYRGAQGIILVYDVTRRE-TFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS-REEGIALAKE 149 (211)
Q Consensus 72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~-~~~~~~~~~~ 149 (211)
++++..+.+.+++++|++++|+|+++++ ++..+.. |+..+.. .++|+++|+||+|+.+...+. .++...++..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~-~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~ 140 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDN-MLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD 140 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHH-HHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHH-HHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH
Confidence 5667777888999999999999999986 7776665 7665543 589999999999996544322 3445566667
Q ss_pred cCCeEEEeeccCCCcHHHHHHHH
Q 028300 150 HGSLFLECSAKTRENVEQCFEQL 172 (211)
Q Consensus 150 ~~~~~~~~Sa~~~~gv~~l~~~i 172 (211)
.+.+++++||+++.|++++++.+
T Consensus 141 ~g~~~~~~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 141 AGYDVLKVSAKTGEGIDELVDYL 163 (302)
T ss_dssp TTCEEEECCTTTCTTHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHhhc
Confidence 78999999999999999998664
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.43 E-value=6.1e-14 Score=108.67 Aligned_cols=104 Identities=7% Similarity=0.077 Sum_probs=63.2
Q ss_pred EEEEEEEeCCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCH
Q 028300 61 RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSR 140 (211)
Q Consensus 61 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~ 140 (211)
++.+.|+||+|..... ......+|.+++++|....+....+.. .+ ...|.++++||+|+........
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~----~i------~~~~~ivvlNK~Dl~~~~~~s~ 213 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK----GI------FELADMIAVNKADDGDGERRAS 213 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT----TH------HHHCSEEEEECCSTTCCHHHHH
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHH----HH------hccccEEEEEchhccCchhHHH
Confidence 4578999999964321 234578999999999875432211110 00 1245678889999744322211
Q ss_pred HHHHHHHHH----------cCCeEEEeeccCCCcHHHHHHHHHHHHH
Q 028300 141 EEGIALAKE----------HGSLFLECSAKTRENVEQCFEQLALKIM 177 (211)
Q Consensus 141 ~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 177 (211)
.....+... +..+++.+|++++.|++++++.|.+.+.
T Consensus 214 ~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 214 AAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 112222221 1356899999999999999999988654
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.39 E-value=4.5e-13 Score=95.23 Aligned_cols=109 Identities=9% Similarity=-0.027 Sum_probs=71.3
Q ss_pred CCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHH---HHHhhhhccCCCccEEEEeecC-CCCCCcccCHHHHH
Q 028300 69 TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVW---AKEVDLYSTNQDCVKMLVGNKV-DRDSERVVSREEGI 144 (211)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~~~p~viv~nK~-Dl~~~~~v~~~~~~ 144 (211)
.+|+..++.+|+.++.+.|++|||+|.+|.+.++ ....+ ..++.......+.|++|++||. |+.. .....++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~ 185 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA 185 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHH
Confidence 3478889999999999999999999999876544 33323 3334332123689999999995 6643 34444443
Q ss_pred HHHH----HcCCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 145 ALAK----EHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 145 ~~~~----~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
+... ...+.+..|||.+|+|+.+-++||.+.+...+
T Consensus 186 e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 186 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred HHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 3221 13466999999999999999999987765443
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.34 E-value=2e-11 Score=95.88 Aligned_cols=88 Identities=20% Similarity=0.201 Sum_probs=57.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccc--eeeEEEEEEECCE---------------EEEEEEEeCCCh
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIG--VDFKIKLLTVAGK---------------RLKLTIWDTAGQ 72 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~---------------~~~~~l~D~~g~ 72 (211)
......+|+++|++|||||||+|.|.+.........++ .....-.+.+.+. ...+.+||+||.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 34556799999999999999999999866422222222 1112222333321 136899999995
Q ss_pred hh-------hccchhhhccCCcEEEEEEECCC
Q 028300 73 ER-------FRTLTSSYYRGAQGIILVYDVTR 97 (211)
Q Consensus 73 ~~-------~~~~~~~~~~~~d~~i~v~d~~~ 97 (211)
.. ........++.+|++++|+|+.+
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 32 22234456688999999999864
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.31 E-value=1.7e-12 Score=101.77 Aligned_cols=91 Identities=21% Similarity=0.223 Sum_probs=51.6
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhhCCC-CCCCCccceeeEEEEEEECCE---------------EEEEEEEeCCChh
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFISSSV-DDLSPTIGVDFKIKLLTVAGK---------------RLKLTIWDTAGQE 73 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~ 73 (211)
......+|+++|.+|+|||||+|+|.+..+ ....|..........+.+.+. ...+.+||+||..
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 445678999999999999999999998765 111121111111222233221 2359999999976
Q ss_pred hhcc-------chhhhccCCcEEEEEEECCChhh
Q 028300 74 RFRT-------LTSSYYRGAQGIILVYDVTRRET 100 (211)
Q Consensus 74 ~~~~-------~~~~~~~~~d~~i~v~d~~~~~s 100 (211)
.... .+...++.+|++++|+|+++.++
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 5432 35567889999999999886443
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.23 E-value=1.7e-11 Score=91.30 Aligned_cols=109 Identities=9% Similarity=-0.021 Sum_probs=75.4
Q ss_pred CCChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHH---HHHhhhhccCCCccEEEEeec-CCCCCCcccCHHHHH
Q 028300 69 TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVW---AKEVDLYSTNQDCVKMLVGNK-VDRDSERVVSREEGI 144 (211)
Q Consensus 69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~~~~~~p~viv~nK-~Dl~~~~~v~~~~~~ 144 (211)
.+|+...+.+|+.++.+.|++|||+|.+|.+.++ ....+ ..++.......+.|++|++|| .|+... ....++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~ 270 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLA 270 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHH
Confidence 4578888999999999999999999999987544 22212 234433212468999999997 577433 4444443
Q ss_pred HHHH----HcCCeEEEeeccCCCcHHHHHHHHHHHHHhcc
Q 028300 145 ALAK----EHGSLFLECSAKTRENVEQCFEQLALKIMEVP 180 (211)
Q Consensus 145 ~~~~----~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~ 180 (211)
+... ...+.+..|||.+|+|+.+-++||.+.+...+
T Consensus 271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 3221 13456999999999999999999998875543
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.04 E-value=3.4e-11 Score=94.39 Aligned_cols=142 Identities=15% Similarity=0.123 Sum_probs=85.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC-----CCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc--------chh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS-----SVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT--------LTS 80 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------~~~ 80 (211)
..+|+++|.+|+|||||+|+|++. ........++++.....+.+... +.++||||...... ...
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 357999999999999999999976 22333445566666666655432 78999999532211 112
Q ss_pred hhc--cCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEee
Q 028300 81 SYY--RGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECS 158 (211)
Q Consensus 81 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 158 (211)
.++ ...|.++++++......+..+. . +.. ....+.|+++++||.|......... ....+.+..+..+...+
T Consensus 239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~--~---l~~-l~~~~~~~~~v~~k~d~~~~~~~~~-~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNEGQTLFFGGLA--R---LDY-IKGGRRSFVCYMANELTVHRTKLEK-ADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE--E---EEE-EESSSEEEEEEECTTSCEEEEEGGG-HHHHHHHHBTTTBCSSC
T ss_pred HHhcccccCceEEEEcCCceEEECCEE--E---EEE-ccCCCceEEEEecCCcccccccHHH-HHHHHHHhcCCccCCCC
Confidence 222 5679999999985321111111 0 111 1345789999999999865443322 22334445666665555
Q ss_pred ccCCCcH
Q 028300 159 AKTRENV 165 (211)
Q Consensus 159 a~~~~gv 165 (211)
+.+..++
T Consensus 312 ~~~~~~~ 318 (369)
T 3ec1_A 312 KRYAAEF 318 (369)
T ss_dssp GGGTTTC
T ss_pred chhhhhc
Confidence 5544443
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.99 E-value=6.4e-10 Score=88.04 Aligned_cols=139 Identities=20% Similarity=0.282 Sum_probs=70.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCCCC---CCCccceeeEEEEEEECCE--EEEEEEEeCCChhhh-------------
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSVDD---LSPTIGVDFKIKLLTVAGK--RLKLTIWDTAGQERF------------- 75 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~l~D~~g~~~~------------- 75 (211)
.++++|+|++|+|||||++.|++..+.. .....+.......+..... ...++++|++|....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 3569999999999999999999875421 1112233333333333222 236889999874211
Q ss_pred -----ccchhhh---------ccCC--cE-EEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc
Q 028300 76 -----RTLTSSY---------YRGA--QG-IILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV 138 (211)
Q Consensus 76 -----~~~~~~~---------~~~~--d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v 138 (211)
....... +..+ |+ ++++.|....-+..++ .++..+. .++|+++|.||+|.....++
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~-----~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD-----SKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC-----SCSEEEEEESCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh-----hCCCEEEEEcchhccchHHH
Confidence 0111111 1122 33 5556665543222222 1333332 58899999999998654432
Q ss_pred CH--HHHHHHHHHcCCeEEEeec
Q 028300 139 SR--EEGIALAKEHGSLFLECSA 159 (211)
Q Consensus 139 ~~--~~~~~~~~~~~~~~~~~Sa 159 (211)
.. ..+.......+++++.+|.
T Consensus 195 ~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 195 TKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHHHBTTBCCCCCCC-
T ss_pred HHHHHHHHHHHHHcCCcEEecCC
Confidence 21 1112212235666666664
No 215
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.99 E-value=3.6e-09 Score=83.72 Aligned_cols=159 Identities=16% Similarity=0.182 Sum_probs=88.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCCCC--CCCcccee--eEEEEEEECCEEEEEEEEeCCChhhhccch-----hhhcc
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSVDD--LSPTIGVD--FKIKLLTVAGKRLKLTIWDTAGQERFRTLT-----SSYYR 84 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~-----~~~~~ 84 (211)
...|+++|++|+|||||+|.+.+..... .....+.. .....+. ......+.+||++|........ ...+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 3489999999999999999999743211 11111111 1111111 1111257899999853211111 12234
Q ss_pred CCcEEEEEEECC--ChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCC-------CCcccCHHHH----HHHH----
Q 028300 85 GAQGIILVYDVT--RRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRD-------SERVVSREEG----IALA---- 147 (211)
Q Consensus 85 ~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~-------~~~~v~~~~~----~~~~---- 147 (211)
..+..++ ++.. ..+... +...+. ..+.|+++|.||.|+. .-+.....+. ..+.
T Consensus 148 ~~~~~~~-lS~G~~~kqrv~-----la~aL~----~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 148 EYDFFII-ISATRFKKNDID-----IAKAIS----MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp GCSEEEE-EESSCCCHHHHH-----HHHHHH----HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCeEE-eCCCCccHHHHH-----HHHHHH----hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4455555 7776 322111 222222 2378999999999962 1112222222 2222
Q ss_pred HHcC---CeEEEeec--cCCCcHHHHHHHHHHHHHhccchh
Q 028300 148 KEHG---SLFLECSA--KTRENVEQCFEQLALKIMEVPSLL 183 (211)
Q Consensus 148 ~~~~---~~~~~~Sa--~~~~gv~~l~~~i~~~~~~~~~~~ 183 (211)
...+ ..++.+|+ ..+.|++++.+.+.+.+.+.++..
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~ 258 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN 258 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence 1222 25788999 556679999999998887776544
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.99 E-value=1.3e-09 Score=85.45 Aligned_cols=97 Identities=15% Similarity=0.191 Sum_probs=72.4
Q ss_pred ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHH----HHH
Q 028300 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEG----IAL 146 (211)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~----~~~ 146 (211)
..++|..++..+.+.+|++++|+|++++. ..|...+..+ ..++|+++|+||+|+.+.. ...+.. ..+
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~ 125 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRF--VGNNKVLLVGNKADLIPKS-VKHDKVKHWMRYS 125 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHH--SSSSCEEEEEECGGGSCTT-SCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHH--hCCCcEEEEEEChhcCCcc-cCHHHHHHHHHHH
Confidence 45778888889999999999999999863 2255555554 2478999999999996543 222222 233
Q ss_pred HHHcCC---eEEEeeccCCCcHHHHHHHHHHHH
Q 028300 147 AKEHGS---LFLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 147 ~~~~~~---~~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
+...+. +++.+||+++.|++++++.|.+..
T Consensus 126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 556676 799999999999999999987654
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.94 E-value=1.3e-09 Score=88.33 Aligned_cols=151 Identities=15% Similarity=0.141 Sum_probs=84.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHh------hCCC-----CCCCCcc-----------ceeeEEEEEE-------------
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFI------SSSV-----DDLSPTI-----------GVDFKIKLLT------------- 56 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~------~~~~-----~~~~~~~-----------~~~~~~~~~~------------- 56 (211)
.....|+|+|.+||||||++++|. +... +.+.+.. +..+......
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 456789999999999999999998 3331 1111100 0111110000
Q ss_pred ECCEEEEEEEEeCCChhhhc-cchhh---h--ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccE-EEEeec
Q 028300 57 VAGKRLKLTIWDTAGQERFR-TLTSS---Y--YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVK-MLVGNK 129 (211)
Q Consensus 57 ~~~~~~~~~l~D~~g~~~~~-~~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~-viv~nK 129 (211)
.....+.+.|+||||..... .+... . +..+|.+++|+|+......... ...+.. .+|+ .+|+||
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~----a~~~~~-----~~~i~gvVlNK 249 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ----AKAFKD-----KVDVASVIVTK 249 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH----HHHHHH-----HHCCCCEEEEC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH----HHHHHh-----hcCceEEEEeC
Confidence 00023578999999964321 11111 1 2278999999999875432111 112211 2564 899999
Q ss_pred CCCCCCcccCHHHHHHHHHHcCCeE------------------EEeeccCCCc-HHHHHHHHHHH
Q 028300 130 VDRDSERVVSREEGIALAKEHGSLF------------------LECSAKTREN-VEQCFEQLALK 175 (211)
Q Consensus 130 ~Dl~~~~~v~~~~~~~~~~~~~~~~------------------~~~Sa~~~~g-v~~l~~~i~~~ 175 (211)
.|....... ........+.|+ +.+|+..|.| +.++++++.+.
T Consensus 250 ~D~~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 250 LDGHAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TTSCCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CccccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 998633221 122233445443 3368888988 98888888765
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.92 E-value=3.9e-11 Score=93.97 Aligned_cols=134 Identities=13% Similarity=0.147 Sum_probs=77.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCC------CCCCCccceeeEEEEEEECCEEEEEEEEeCCChhhhcc----ch----h
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSV------DDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQERFRT----LT----S 80 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~----~~----~ 80 (211)
.+|+++|.+|+|||||+|+|++... ......++++.....+.+... +.++||||...... +. .
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 5799999999999999999997632 223455566666656555443 78999999533221 11 1
Q ss_pred hh--ccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHHHHcCCeEEEee
Q 028300 81 SY--YRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALAKEHGSLFLECS 158 (211)
Q Consensus 81 ~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 158 (211)
.+ ....+..+++++......+..+. . +. .....+.|+++++||+|........ .....+.+..+..++..+
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~--~---~d-~l~~~~~~~~~v~nk~d~~~~~~~~-~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA--R---FD-YVSGGRRAFTCHFSNRLTIHRTKLE-KADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE--E---EE-EEESSSEEEEEEECTTSCEEEEEHH-HHHHHHHHHBTTTBCSSC
T ss_pred HhccccccCceEEEEcCCCEEEEcceE--E---EE-EecCCCceEEEEecCccccccccHH-HHHHHHHHHhCCccCCCc
Confidence 11 35668888998874321111111 1 11 1134578999999999986544322 222333444555444444
No 219
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.86 E-value=4.4e-09 Score=79.43 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=70.3
Q ss_pred EEeCCChh-hhccchhhhccCCcEEEEEEECCChhhHHH--HHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHH
Q 028300 66 IWDTAGQE-RFRTLTSSYYRGAQGIILVYDVTRRETFTN--LSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREE 142 (211)
Q Consensus 66 l~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~ 142 (211)
+-..|||. .........+.++|++++|+|+.++.+..+ +.. | + .++|.++|+||+|+.+... .+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~-~---l------~~kp~ilVlNK~DL~~~~~--~~~ 70 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIED-I---L------KNKPRIMLLNKADKADAAV--TQQ 70 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHH-H---C------SSSCEEEEEECGGGSCHHH--HHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHH-H---H------CCCCEEEEEECcccCCHHH--HHH
Confidence 34578876 334456677899999999999999877542 222 2 1 4789999999999965321 223
Q ss_pred HHHHHHHcCCeEEEeeccCCCcHHHHHHHHHHHHHh
Q 028300 143 GIALAKEHGSLFLECSAKTRENVEQCFEQLALKIME 178 (211)
Q Consensus 143 ~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 178 (211)
...+....+.+++.+||.++.|++++++.+.+.+.+
T Consensus 71 ~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 71 WKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 344555567899999999999999999988877654
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.84 E-value=3.3e-09 Score=83.11 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=70.9
Q ss_pred ChhhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHH----HHH
Q 028300 71 GQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEG----IAL 146 (211)
Q Consensus 71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~----~~~ 146 (211)
.++.|..+...+.+.++++++|+|++++++ . |...+..+ ..+.|+++|+||+|+.+.. ...+.. ..+
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s-~~~~l~~~--l~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~ 127 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----S-FIPGLPRF--AADNPILLVGNKADLLPRS-VKYPKLLRWMRRM 127 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----G-CCSSHHHH--CTTSCEEEEEECGGGSCTT-CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----c-hhhHHHHH--hCCCCEEEEEEChhcCCCc-cCHHHHHHHHHHH
Confidence 467888888888899999999999999763 1 44444433 2378999999999996543 222222 233
Q ss_pred HHHcCC---eEEEeeccCCCcHHHHHHHHHHHH
Q 028300 147 AKEHGS---LFLECSAKTRENVEQCFEQLALKI 176 (211)
Q Consensus 147 ~~~~~~---~~~~~Sa~~~~gv~~l~~~i~~~~ 176 (211)
+...+. .++.+||+++.|++++++.+.+..
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 455666 689999999999999999987654
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.83 E-value=1.2e-08 Score=76.50 Aligned_cols=136 Identities=21% Similarity=0.212 Sum_probs=71.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCCCCCC-------Cccc-eeeEEEEEEECCEE--EEEEEEeCCChhhh--------
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSVDDLS-------PTIG-VDFKIKLLTVAGKR--LKLTIWDTAGQERF-------- 75 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~~~~~-------~~~~-~~~~~~~~~~~~~~--~~~~l~D~~g~~~~-------- 75 (211)
.++++++|++|+|||||++.|++....... +... .......+...... ..++++|++|....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 589999999999999999999865431110 0000 11111222222222 36789999983210
Q ss_pred --c--------cc----------hhhhccCCcEEEEEEECC-ChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCC
Q 028300 76 --R--------TL----------TSSYYRGAQGIILVYDVT-RRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDS 134 (211)
Q Consensus 76 --~--------~~----------~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~ 134 (211)
. .. .+..+..+++.++++|.. .+-.-.+. . ++..+. .. .++++|.+|+|...
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~-~-~l~~L~----~~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL-E-FMKHLS----KV-VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH-H-HHHHHH----TT-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH-H-HHHHHH----hc-CcEEEEEeccccCC
Confidence 0 00 011234568889999954 32222221 1 333332 22 89999999999865
Q ss_pred CcccCH--HHHHHHHHHcCCeEEE
Q 028300 135 ERVVSR--EEGIALAKEHGSLFLE 156 (211)
Q Consensus 135 ~~~v~~--~~~~~~~~~~~~~~~~ 156 (211)
..+... ..+......+++.+|.
T Consensus 155 ~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 155 LEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHcCccccC
Confidence 433221 2233344556776654
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.81 E-value=3.9e-09 Score=79.67 Aligned_cols=59 Identities=24% Similarity=0.373 Sum_probs=37.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQE 73 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 73 (211)
...++|+++|.||+|||||+|+|.+.....+.+.++++.....+.... .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 467899999999999999999999877655666666665544444422 57899999953
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.74 E-value=3.3e-09 Score=79.22 Aligned_cols=57 Identities=19% Similarity=0.353 Sum_probs=36.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER 74 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~ 74 (211)
++|+++|.+|+|||||+|+|.+.......++++++.....+... ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence 69999999999999999999988765566666665544333332 2578999999653
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.60 E-value=1.3e-07 Score=75.30 Aligned_cols=140 Identities=18% Similarity=0.201 Sum_probs=76.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhh------CCC-----CCCCC-----------ccceeeEEEEEEEC------------
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFIS------SSV-----DDLSP-----------TIGVDFKIKLLTVA------------ 58 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~------~~~-----~~~~~-----------~~~~~~~~~~~~~~------------ 58 (211)
.+..|+++|++|+||||++..|.. ... +.+.+ ..+..........+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998873 111 11111 01111110000000
Q ss_pred -CEEEEEEEEeCCChhhhccc----h--hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCC
Q 028300 59 -GKRLKLTIWDTAGQERFRTL----T--SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVD 131 (211)
Q Consensus 59 -~~~~~~~l~D~~g~~~~~~~----~--~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~D 131 (211)
...+.+.|+||+|....... . ......+|.+++|+|+.......... ..+.. .-.+..+|+||.|
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a----~~f~~----~~~i~gVIlTKlD 250 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA----LAFKE----ATPIGSIIVTKLD 250 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH----HHHHH----SCTTEEEEEECCS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH----HHHHh----hCCCeEEEEECCC
Confidence 01256889999994322110 0 11223579999999988754332222 11211 1235579999999
Q ss_pred CCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHH
Q 028300 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVE 166 (211)
Q Consensus 132 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 166 (211)
..... -.+.......+.|+..++. |++++
T Consensus 251 ~~~~g----G~~ls~~~~~g~PI~fig~--Ge~vd 279 (443)
T 3dm5_A 251 GSAKG----GGALSAVAATGAPIKFIGT--GEKID 279 (443)
T ss_dssp SCSSH----HHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred Ccccc----cHHHHHHHHHCCCEEEEEc--CCChH
Confidence 75322 2234445567888777764 44443
No 225
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.47 E-value=7.9e-08 Score=73.15 Aligned_cols=89 Identities=15% Similarity=0.108 Sum_probs=61.5
Q ss_pred cchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc--CHHHHHHHHHHcCCeE
Q 028300 77 TLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV--SREEGIALAKEHGSLF 154 (211)
Q Consensus 77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v--~~~~~~~~~~~~~~~~ 154 (211)
.+.+..+.++|.+++|+|+.++..-.+..+.++... ...++|.+||+||+|+.+.... ............+.++
T Consensus 78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~----~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH----HHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 445567899999999999997765444333233222 2458899999999999765321 1233445555668899
Q ss_pred EEeeccCCCcHHHHH
Q 028300 155 LECSAKTRENVEQCF 169 (211)
Q Consensus 155 ~~~Sa~~~~gv~~l~ 169 (211)
+.+|+.++.|+++++
T Consensus 154 ~~~sa~~~~g~~~L~ 168 (307)
T 1t9h_A 154 YLTSSKDQDSLADII 168 (307)
T ss_dssp EECCHHHHTTCTTTG
T ss_pred EEEecCCCCCHHHHH
Confidence 999999888877654
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.43 E-value=8.6e-08 Score=71.56 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=62.6
Q ss_pred CCChhhh-ccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccCHHHHHHHH
Q 028300 69 TAGQERF-RTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVSREEGIALA 147 (211)
Q Consensus 69 ~~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~~~~~~~~~ 147 (211)
.|||... .......+.++|++++|+|+.++.+..+. .+. + . ++|.++|+||+|+.+... .+....+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~------~l~-l-l--~k~~iivlNK~DL~~~~~--~~~~~~~~ 71 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY------GVD-F-S--RKETIILLNKVDIADEKT--TKKWVEFF 71 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT------TSC-C-T--TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh------HHH-h-c--CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence 5776532 23456678999999999999988654332 112 2 1 889999999999965321 22334455
Q ss_pred HHcCCeEEEeeccCCCcHHHHHHHHHH
Q 028300 148 KEHGSLFLECSAKTRENVEQCFEQLAL 174 (211)
Q Consensus 148 ~~~~~~~~~~Sa~~~~gv~~l~~~i~~ 174 (211)
...+.++ .+||.++.|++++++.+.+
T Consensus 72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 72 KKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 5667888 9999999999998877654
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.30 E-value=8.4e-07 Score=73.18 Aligned_cols=63 Identities=19% Similarity=0.143 Sum_probs=39.7
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCCCC-CCCCc-cceeeEEEEEE--E-CCEEEEEEEEeCCChh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVD-DLSPT-IGVDFKIKLLT--V-AGKRLKLTIWDTAGQE 73 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~~~-~~~~~-~~~~~~~~~~~--~-~~~~~~~~l~D~~g~~ 73 (211)
....++|+|+|.||+|||||+|+|++.... ....+ .+.+.....+. . ...+..+.|+||||..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 356789999999999999999999987632 22111 12222111111 1 1233568899999954
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.29 E-value=2.3e-07 Score=74.01 Aligned_cols=131 Identities=21% Similarity=0.187 Sum_probs=69.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC------CC-----CCCCCc-----------cc--------eeeEEEEE---EE-CC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS------SV-----DDLSPT-----------IG--------VDFKIKLL---TV-AG 59 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~------~~-----~~~~~~-----------~~--------~~~~~~~~---~~-~~ 59 (211)
...|+++|++|+||||+++.|... .. +.+.+. .+ .+.....+ .+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 467999999999999999998752 11 000000 00 00000000 00 01
Q ss_pred EEEEEEEEeCCChhhhcc-ch-----hhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCc-c-EEEEeecCC
Q 028300 60 KRLKLTIWDTAGQERFRT-LT-----SSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDC-V-KMLVGNKVD 131 (211)
Q Consensus 60 ~~~~~~l~D~~g~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-p-~viv~nK~D 131 (211)
..+.+.|+||||...... +. ...+..+|.+++|+|+..... ... ....+. ... | ..+|+||.|
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~-----~~~~~i~gvVlnK~D 249 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGI-QAKAFK-----EAVGEIGSIIVTKLD 249 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHH-HHHHHH-----TTSCSCEEEEEECSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHH-HHHHHh-----hcccCCeEEEEeCCC
Confidence 345688999999543211 11 112236899999999876542 211 111111 234 4 899999999
Q ss_pred CCCCcccCHHHHHHHHHHcCCeEEEe
Q 028300 132 RDSERVVSREEGIALAKEHGSLFLEC 157 (211)
Q Consensus 132 l~~~~~v~~~~~~~~~~~~~~~~~~~ 157 (211)
..... ..........+.|+..+
T Consensus 250 ~~~~~----g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 250 GSAKG----GGALSAVAETKAPIKFI 271 (432)
T ss_dssp SCSTT----HHHHHHHHHSSCCEEEE
T ss_pred Cccch----HHHHHHHHHHCCCEEEe
Confidence 74321 12334555667665544
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.24 E-value=6.4e-07 Score=71.26 Aligned_cols=139 Identities=22% Similarity=0.292 Sum_probs=75.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhh------CCC-----CCCCC-----------ccceeeEEEE------------E-EE
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFIS------SSV-----DDLSP-----------TIGVDFKIKL------------L-TV 57 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~------~~~-----~~~~~-----------~~~~~~~~~~------------~-~~ 57 (211)
....|+++|++|+||||++..|.. ... +.+.+ ..+....... + ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 467889999999999999998862 111 11100 0011111000 0 00
Q ss_pred CCEEEEEEEEeCCChhh--hcc-c---hhh--hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeec
Q 028300 58 AGKRLKLTIWDTAGQER--FRT-L---TSS--YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNK 129 (211)
Q Consensus 58 ~~~~~~~~l~D~~g~~~--~~~-~---~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK 129 (211)
....+.+.++||||... ... + ... .....|.+++|+|+...+...+....+... -.+..+|+||
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~--------~~~~gVIlTK 247 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA--------SPIGSVIITK 247 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH--------CSSEEEEEEC
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc--------cCCcEEEEec
Confidence 11235678999999533 111 0 111 112568999999988754333322212221 2356899999
Q ss_pred CCCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcH
Q 028300 130 VDRDSERVVSREEGIALAKEHGSLFLECSAKTRENV 165 (211)
Q Consensus 130 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 165 (211)
.|... ....+.......+.|+..++. |+++
T Consensus 248 lD~~a----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 248 MDGTA----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp GGGCS----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ccccc----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 99753 223344555567889877775 5554
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.19 E-value=1.3e-06 Score=66.27 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=54.1
Q ss_pred EEEEEEEeCCChhh--hcc-chh-----hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCcc-EEEEeecCC
Q 028300 61 RLKLTIWDTAGQER--FRT-LTS-----SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCV-KMLVGNKVD 131 (211)
Q Consensus 61 ~~~~~l~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-~viv~nK~D 131 (211)
.+.+.++||||... ... +.. ..+..+|.+++|+|+..... ... ....+. . ..| ..+|+||.|
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~-~~~~~~---~--~~~i~gvVlnk~D 250 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYD-LASKFN---Q--ASKIGTIIITKMD 250 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHH-HHHHHH---H--TCTTEEEEEECGG
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHH-HHHHHH---h--hCCCCEEEEeCCC
Confidence 34689999999655 211 111 12346899999999875322 221 111111 1 345 678999999
Q ss_pred CCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHH
Q 028300 132 RDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQ 167 (211)
Q Consensus 132 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 167 (211)
.... ...........+.|+..++ .|.++++
T Consensus 251 ~~~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 251 GTAK----GGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp GCTT----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred CCcc----hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 6432 2234456667788887766 4555544
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.18 E-value=2.7e-06 Score=70.85 Aligned_cols=22 Identities=41% Similarity=0.598 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhCC
Q 028300 17 ILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~~ 38 (211)
|+|+|++|||||||++.+.+..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 9999999999999999998764
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.12 E-value=1e-05 Score=62.83 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=56.3
Q ss_pred hhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCccc-CHHHHHHHHHHcCCeEEEeec
Q 028300 81 SYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVV-SREEGIALAKEHGSLFLECSA 159 (211)
Q Consensus 81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v-~~~~~~~~~~~~~~~~~~~Sa 159 (211)
..+.++|.+++|.+.. |..-....+.++.... ..++|.+||+||+|+.+.... ............+.+++.+|+
T Consensus 126 ~i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa 200 (358)
T 2rcn_A 126 PIAANIDQIVIVSAIL-PELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSS 200 (358)
T ss_dssp EEEECCCEEEEEEEST-TTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBT
T ss_pred HHHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEec
Confidence 3478999999887654 5443333332333322 237788999999999754321 122233444567889999999
Q ss_pred cCCCcHHHHHHH
Q 028300 160 KTRENVEQCFEQ 171 (211)
Q Consensus 160 ~~~~gv~~l~~~ 171 (211)
.++.|++++...
T Consensus 201 ~~~~gl~~L~~~ 212 (358)
T 2rcn_A 201 HTQDGLKPLEEA 212 (358)
T ss_dssp TTTBTHHHHHHH
T ss_pred CCCcCHHHHHHh
Confidence 999999887643
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.09 E-value=3.9e-06 Score=64.56 Aligned_cols=143 Identities=14% Similarity=0.221 Sum_probs=74.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCC-----------CCCc-----------cceeeEEEEEEEC-----------
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDD-----------LSPT-----------IGVDFKIKLLTVA----------- 58 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~-----------~~~~-----------~~~~~~~~~~~~~----------- 58 (211)
...-.|+++|++||||||+++.+.+..... .... .+..+........
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 345689999999999999999987432100 0000 0000100000000
Q ss_pred --CEEEEEEEEeCCChhhhccchhh------hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecC
Q 028300 59 --GKRLKLTIWDTAGQERFRTLTSS------YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKV 130 (211)
Q Consensus 59 --~~~~~~~l~D~~g~~~~~~~~~~------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~ 130 (211)
.....+.++|++|.......... ..-..|-.+++.|........+....+...+ -..++++||.
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~--------~it~iilTKl 278 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAV--------KIDGIILTKL 278 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHS--------CCCEEEEECG
T ss_pred HHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhc--------CCCEEEEeCc
Confidence 01123567899985432211110 1124688999999776532222211121111 2337889999
Q ss_pred CCCCCcccCHHHHHHHHHHcCCeEEEeeccCCCcHHHH
Q 028300 131 DRDSERVVSREEGIALAKEHGSLFLECSAKTRENVEQC 168 (211)
Q Consensus 131 Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 168 (211)
|.... .-.........+.|+..++ +|.+++++
T Consensus 279 D~~a~----~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 279 DADAR----GGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp GGCSC----CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred CCccc----hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 96322 1224455667788877776 66665543
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.95 E-value=3.4e-07 Score=74.01 Aligned_cols=102 Identities=13% Similarity=0.058 Sum_probs=57.0
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCCCCCCCCccceeeEEEEEEECCEEEEEEEEeCCChhh--hccch--------hh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSSVDDLSPTIGVDFKIKLLTVAGKRLKLTIWDTAGQER--FRTLT--------SS 81 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~--~~~~~--------~~ 81 (211)
..+..|+++|.+||||||+.++|.........++.............+......+||..|... ....+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999997543211112211110000000001112346788888632 22222 44
Q ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHhhhh
Q 028300 82 YYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLY 115 (211)
Q Consensus 82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~ 115 (211)
++...++.++|+|.++. +.+.... |...+...
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R~~-~~~~~~~~ 148 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERRAM-IFNFGEQN 148 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHHHH-HHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCC-CHHHHHH-HHHHHHhc
Confidence 55567888999999987 3333333 66655543
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.89 E-value=1.1e-05 Score=64.34 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=23.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..+..-|+|+|++++|||+|+|+|++.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 345678999999999999999999863
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.65 E-value=0.00031 Score=56.05 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=20.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFI 35 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~ 35 (211)
.....|+++|.+|+||||++..|.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345678889999999999999887
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.57 E-value=4.4e-05 Score=53.47 Aligned_cols=23 Identities=35% Similarity=0.738 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
+++++|++|+|||||++.+.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999887653
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.48 E-value=6.3e-05 Score=52.67 Aligned_cols=22 Identities=27% Similarity=0.668 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.|+++|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 239
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.48 E-value=7.2e-05 Score=53.12 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=22.5
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.+.+....--|+|+|++|+|||||++.|...
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3444444456899999999999999999864
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.43 E-value=7.7e-05 Score=53.10 Aligned_cols=22 Identities=41% Similarity=0.676 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++|+|++|||||||++.+.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998763
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.36 E-value=0.0001 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.|+++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999865
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.35 E-value=0.0001 Score=51.81 Aligned_cols=21 Identities=43% Similarity=0.725 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028300 17 ILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~ 37 (211)
++++|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999854
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.34 E-value=0.00011 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
-.|+++|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999999875
No 244
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.34 E-value=7.9e-05 Score=56.68 Aligned_cols=24 Identities=42% Similarity=0.524 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~ 38 (211)
-.++++|++|||||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 378999999999999999998654
No 245
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.30 E-value=0.00048 Score=52.35 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|++|+|||||+|.+. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 67999999999999999998 54
No 246
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.30 E-value=0.00016 Score=51.36 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=23.5
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 7 QSNSYDLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 7 ~~~~~~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
++........|+|.|++||||||+.+.|..
T Consensus 13 ~~~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 13 GLVPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp ---CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445556667899999999999999998874
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.29 E-value=0.00014 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
-++|+|++|||||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68899999999999999998643
No 248
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.28 E-value=0.00014 Score=52.07 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=21.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~~ 38 (211)
..-=.++++|++|||||||++.+.+..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 333468999999999999999998653
No 249
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.27 E-value=0.00012 Score=50.76 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028300 16 KILLIGDSGVGKSSLLVSFI 35 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~ 35 (211)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 57999999999999999654
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.26 E-value=0.00014 Score=52.13 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.....|+|+|++|||||||++.+.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44568999999999999999988764
No 251
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.24 E-value=0.00017 Score=51.61 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~ 38 (211)
--|+++|++|||||||++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358999999999999999998653
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.24 E-value=0.00017 Score=50.74 Aligned_cols=21 Identities=43% Similarity=0.725 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028300 17 ILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~ 37 (211)
|+|+||+|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999854
No 253
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.23 E-value=0.00014 Score=52.52 Aligned_cols=28 Identities=25% Similarity=0.549 Sum_probs=21.9
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~~ 38 (211)
...--.++|+|++|||||||++.+.+..
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3344468999999999999999998743
No 254
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.20 E-value=0.00024 Score=49.31 Aligned_cols=22 Identities=45% Similarity=0.555 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999999986
No 255
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.18 E-value=0.00022 Score=48.83 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999998754
No 256
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.16 E-value=0.00024 Score=49.12 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..|+++|++||||||+.+.|...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999998764
No 257
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.15 E-value=0.00024 Score=50.69 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..|+|+|++|||||||++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999999754
No 258
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.15 E-value=0.00022 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999888653
No 259
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.14 E-value=0.0026 Score=45.46 Aligned_cols=86 Identities=9% Similarity=0.057 Sum_probs=52.8
Q ss_pred EEEEEEEeCCCh-hhhccchhhhccCCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcccC
Q 028300 61 RLKLTIWDTAGQ-ERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERVVS 139 (211)
Q Consensus 61 ~~~~~l~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~v~ 139 (211)
.+.+.++|+|+. .. ......+..+|.+|+++..+. .++..+.. +...+... .+.++.+|+|+.|..... .
T Consensus 67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~-~~~~~~~~-~~~~l~~~---~~~~~~vv~N~~~~~~~~--~ 137 (209)
T 3cwq_A 67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDA-LALDALML-TIETLQKL---GNNRFRILLTIIPPYPSK--D 137 (209)
T ss_dssp GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSH-HHHHHHHH-HHHHHHHT---CSSSEEEEECSBCCTTSC--H
T ss_pred cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCc-hhHHHHHH-HHHHHHhc---cCCCEEEEEEecCCccch--H
Confidence 356889999986 32 234456778999999988764 35555555 44444432 156688999999864301 1
Q ss_pred HHHHHHHHHHcCCeEE
Q 028300 140 REEGIALAKEHGSLFL 155 (211)
Q Consensus 140 ~~~~~~~~~~~~~~~~ 155 (211)
..+..+....++.+++
T Consensus 138 ~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 138 GDEARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHHcCCchh
Confidence 2344444555665544
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.14 E-value=0.00025 Score=50.49 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~ 38 (211)
-.|+++|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998754
No 261
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.13 E-value=0.00025 Score=49.82 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
.|+++|++|||||||++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999975
No 262
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.12 E-value=0.0003 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998743
No 263
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.11 E-value=0.00029 Score=51.77 Aligned_cols=22 Identities=18% Similarity=0.480 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFI 35 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~ 35 (211)
.-.|+|+|++|||||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999988
No 264
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.11 E-value=0.00028 Score=50.12 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.-.|+++|++|||||||++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999988753
No 265
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.10 E-value=0.00027 Score=48.68 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 028300 15 FKILLIGDSGVGKSSLLVSF 34 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l 34 (211)
..|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 266
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.10 E-value=0.00033 Score=49.08 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=23.1
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.......+|+++|++||||||+.+.|...
T Consensus 5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 5 MEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 33344568999999999999999988764
No 267
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.09 E-value=0.00027 Score=51.32 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|+.|||||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988865
No 268
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.08 E-value=0.0003 Score=54.57 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV 39 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~ 39 (211)
.++++|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999997543
No 269
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.08 E-value=0.00035 Score=49.98 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
...|+++|+.|||||||++.+.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988763
No 270
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.07 E-value=0.00037 Score=51.24 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=22.3
Q ss_pred CCCCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 8 SNSYDLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 8 ~~~~~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
+........|+|+|+.|||||||++.|.+
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34455667899999999999999998876
No 271
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.07 E-value=0.00029 Score=49.75 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
+++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4799999999999999988764
No 272
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.06 E-value=0.00036 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999988753
No 273
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.04 E-value=0.00032 Score=48.88 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999998764
No 274
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.03 E-value=0.00036 Score=51.07 Aligned_cols=22 Identities=36% Similarity=0.700 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|+.|+|||||++.+.+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998865
No 275
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.03 E-value=0.00034 Score=52.05 Aligned_cols=23 Identities=39% Similarity=0.479 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999988653
No 276
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.02 E-value=0.00035 Score=50.31 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998865
No 277
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.02 E-value=0.00034 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57999999999999999888653
No 278
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.02 E-value=0.00051 Score=47.54 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
-.|+++|++||||||+.+.|..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 279
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.00 E-value=0.00041 Score=51.02 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988653
No 280
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.00 E-value=0.00044 Score=49.51 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
+|+++|+|||||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998873
No 281
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.00 E-value=0.00046 Score=48.99 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
-.|+++|++||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 282
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.00 E-value=0.00041 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999988763
No 283
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.00 E-value=0.00042 Score=50.45 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67999999999999999988653
No 284
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.99 E-value=0.00044 Score=49.63 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998853
No 285
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.99 E-value=0.00042 Score=52.61 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
=.++|+|++|+|||||++.|.+-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 37899999999999999998864
No 286
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.99 E-value=0.00041 Score=51.71 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999988653
No 287
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.99 E-value=0.00061 Score=48.37 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=21.8
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
......|+|.|++||||||+.+.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34456899999999999999998874
No 288
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.99 E-value=0.00042 Score=49.26 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
...|+|+|++||||||+.+.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999988643
No 289
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.98 E-value=0.00045 Score=49.08 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
+|+|+|++||||||+.+.|..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999876
No 290
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.98 E-value=0.00051 Score=48.91 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
+.|+++|++||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 291
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.98 E-value=0.00045 Score=48.04 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..++|+|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 292
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.98 E-value=0.00069 Score=48.30 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=24.1
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
........|+|+|++||||||+.+.|...
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34455678999999999999999998864
No 293
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.98 E-value=0.00046 Score=49.54 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999863
No 294
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.97 E-value=0.00044 Score=51.29 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988653
No 295
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.97 E-value=0.00045 Score=51.37 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5799999999999999998865
No 296
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.97 E-value=0.00049 Score=49.72 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 297
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.97 E-value=0.00048 Score=48.29 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
.|+|.|++||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 298
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.96 E-value=0.00036 Score=50.06 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|+.|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999876
No 299
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.96 E-value=0.00056 Score=50.21 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...+|+|+|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999863
No 300
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.96 E-value=0.00061 Score=52.00 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.4
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
......|+|+|++|||||||++.+.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 456678999999999999999988764
No 301
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.95 E-value=0.00048 Score=50.82 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5799999999999999998865
No 302
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.95 E-value=0.00049 Score=51.12 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++|+|++|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 6899999999999999998753
No 303
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.95 E-value=0.00048 Score=50.53 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999988653
No 304
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.95 E-value=0.00054 Score=48.54 Aligned_cols=21 Identities=33% Similarity=0.571 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998875
No 305
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.94 E-value=0.00048 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999998865
No 306
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.94 E-value=0.00049 Score=47.71 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..|++.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998763
No 307
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.94 E-value=0.0005 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999988653
No 308
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.94 E-value=0.00058 Score=47.92 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...|++.|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999874
No 309
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.94 E-value=0.00052 Score=50.65 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 310
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.93 E-value=0.0005 Score=48.84 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..-.|+++|++||||||+.+.|...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988754
No 311
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.93 E-value=0.00079 Score=51.51 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.6
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...++-|+|+|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999999998864
No 312
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.92 E-value=0.00049 Score=50.40 Aligned_cols=20 Identities=40% Similarity=0.838 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 028300 16 KILLIGDSGVGKSSLLVSFI 35 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~ 35 (211)
-++++|++|||||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 57999999999999999887
No 313
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.92 E-value=0.00056 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999875
No 314
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.92 E-value=0.00052 Score=51.50 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999988653
No 315
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.91 E-value=0.00053 Score=51.26 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++|+|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999988653
No 316
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.91 E-value=0.00072 Score=47.22 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998873
No 317
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.91 E-value=0.00065 Score=47.69 Aligned_cols=23 Identities=17% Similarity=0.537 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 318
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.90 E-value=0.00033 Score=48.58 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.|+|+|++|||||||++.+.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998865
No 319
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.90 E-value=0.00062 Score=47.66 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 320
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.89 E-value=0.00052 Score=49.57 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
-++++|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999874
No 321
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.89 E-value=0.00057 Score=50.55 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999988753
No 322
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.88 E-value=0.00035 Score=50.78 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=16.7
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHh-hC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFI-SS 37 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~-~~ 37 (211)
..--.|+++|++|||||||++.|. +.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 333468999999999999999998 54
No 323
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.86 E-value=0.00069 Score=49.96 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=21.6
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
......+.|+|.|++||||||+.+.|..
T Consensus 17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 17 PNGGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp ----CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3445567899999999999999998865
No 324
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.86 E-value=0.0006 Score=50.80 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 67899999999999999988653
No 325
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.85 E-value=0.00057 Score=51.86 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV 39 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~ 39 (211)
.++++|++|+|||||+|.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 579999999999999999987543
No 326
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.85 E-value=0.0007 Score=47.27 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 327
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.85 E-value=0.00065 Score=50.54 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999988763
No 328
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.85 E-value=0.0019 Score=51.54 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=39.1
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhh------------------CCCC----CCCCccceeeEEEEE--EE-CCEEEEEEE
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFIS------------------SSVD----DLSPTIGVDFKIKLL--TV-AGKRLKLTI 66 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~------------------~~~~----~~~~~~~~~~~~~~~--~~-~~~~~~~~l 66 (211)
....-|+|+|+.++|||+|+|.|++ ..|. ....|.|...-...+ .. ++....+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 4566778999999999999996642 1231 122344443332221 11 456788999
Q ss_pred EeCCChh
Q 028300 67 WDTAGQE 73 (211)
Q Consensus 67 ~D~~g~~ 73 (211)
+||.|..
T Consensus 145 lDTEG~~ 151 (457)
T 4ido_A 145 MDTQGTF 151 (457)
T ss_dssp EEECCBT
T ss_pred EeccCCC
Confidence 9999954
No 329
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.84 E-value=0.00063 Score=53.07 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.-+++|+|++|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998753
No 330
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.84 E-value=0.00068 Score=48.63 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 331
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.84 E-value=0.0008 Score=47.94 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 332
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.83 E-value=0.00068 Score=47.16 Aligned_cols=24 Identities=46% Similarity=0.578 Sum_probs=20.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
....|++.|++||||||+.+.|..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHH
Confidence 345789999999999999998874
No 333
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.80 E-value=0.001 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998874
No 334
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.80 E-value=0.00083 Score=50.62 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.3
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
......|++.|++||||||+.+.|..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999974
No 335
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.80 E-value=0.00056 Score=52.01 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++|+|+.|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 6899999999999999988765
No 336
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.79 E-value=0.00076 Score=48.86 Aligned_cols=23 Identities=17% Similarity=0.484 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...|+|.|++||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998863
No 337
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.79 E-value=0.00069 Score=46.93 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999998864
No 338
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.78 E-value=0.00085 Score=48.83 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=21.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
....+|+|+|.+||||||+.+.|..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999998864
No 339
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.78 E-value=0.0011 Score=50.07 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.0
Q ss_pred CceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 11 YDLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 11 ~~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
......|+|.|++|||||||++.|..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988764
No 340
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.76 E-value=0.00077 Score=50.43 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999864
No 341
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.76 E-value=0.00086 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.566 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
..|+|+|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 342
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.76 E-value=0.0011 Score=46.39 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...|++.|++||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 343
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.75 E-value=0.00054 Score=46.36 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998864
No 344
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.75 E-value=0.0012 Score=46.84 Aligned_cols=25 Identities=20% Similarity=0.130 Sum_probs=21.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
.....|+++|++|||||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998874
No 345
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.73 E-value=0.001 Score=45.58 Aligned_cols=21 Identities=33% Similarity=0.322 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998875
No 346
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.73 E-value=0.00084 Score=50.65 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|+.|+|||||++.+.+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5799999999999999998865
No 347
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.71 E-value=0.00083 Score=52.15 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|++|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998764
No 348
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.71 E-value=0.0015 Score=45.68 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=21.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.....|++.|.+||||||+.+.|...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34567999999999999999988753
No 349
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.71 E-value=0.0012 Score=46.62 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.0
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
....|+|.|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3568999999999999999998865
No 350
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.71 E-value=0.00092 Score=49.35 Aligned_cols=27 Identities=33% Similarity=0.358 Sum_probs=22.9
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
.......|+++|++||||||+.+.|..
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 345567899999999999999999864
No 351
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.71 E-value=0.00074 Score=48.73 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...|+|+|++||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 352
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.71 E-value=0.001 Score=45.95 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..|+++|++|||||||+.++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999998853
No 353
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.70 E-value=0.0012 Score=46.85 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..|+|.|++||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999865
No 354
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.69 E-value=0.0013 Score=50.12 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.2
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.....|+|+|++|||||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999988763
No 355
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.68 E-value=0.00044 Score=49.43 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.|+|.|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999998743
No 356
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.68 E-value=0.00099 Score=49.07 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999865
No 357
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.68 E-value=0.001 Score=51.66 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.|+|+|++|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999998753
No 358
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.68 E-value=0.00098 Score=46.86 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...|++.|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 359
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.67 E-value=0.0011 Score=47.84 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 360
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.66 E-value=0.00098 Score=51.70 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|++|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988664
No 361
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.66 E-value=0.001 Score=51.76 Aligned_cols=23 Identities=35% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 57899999999999999888653
No 362
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.66 E-value=0.001 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFI 35 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~ 35 (211)
.-.|+++|++||||||+++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3478999999999999999987
No 363
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.66 E-value=0.0011 Score=49.07 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
.|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 364
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.65 E-value=0.0011 Score=46.63 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
-|++.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 365
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.64 E-value=0.001 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 57899999999999999998654
No 366
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.64 E-value=0.0012 Score=47.20 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999874
No 367
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.64 E-value=0.0017 Score=46.86 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
-|+|+|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467789999999999998864
No 368
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.64 E-value=0.0012 Score=46.50 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 369
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.63 E-value=0.0011 Score=51.59 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999998754
No 370
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.63 E-value=0.0013 Score=45.65 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
-.+++.|++|+|||+|++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999988754
No 371
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.63 E-value=0.0013 Score=46.11 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 372
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.62 E-value=0.0013 Score=48.61 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFI 35 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~ 35 (211)
...|+|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999887
No 373
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.62 E-value=0.0011 Score=51.83 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998764
No 374
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.61 E-value=0.0016 Score=46.83 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 375
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.61 E-value=0.0012 Score=47.47 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
.+|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 376
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.59 E-value=0.0019 Score=49.04 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
.....-.++++|+.||||||+++.+.+
T Consensus 96 ~~~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 96 GFRKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp CSSSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 344556789999999999999998874
No 377
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.59 E-value=0.0012 Score=51.57 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 57899999999999999988654
No 378
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.59 E-value=0.0012 Score=51.63 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|++|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998764
No 379
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.57 E-value=0.0012 Score=50.81 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|++|||||||++.+.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998653
No 380
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.57 E-value=0.0013 Score=51.43 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.|+|+|++|||||||++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999998763
No 381
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.57 E-value=0.001 Score=51.55 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 57899999999999999998654
No 382
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.56 E-value=0.0014 Score=45.09 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 383
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.54 E-value=0.0014 Score=47.32 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
-++++|++|+|||||+..+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998844
No 384
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.54 E-value=0.0013 Score=50.59 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999864
No 385
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.54 E-value=0.0014 Score=48.59 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 386
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.53 E-value=0.0013 Score=51.30 Aligned_cols=22 Identities=27% Similarity=0.688 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++|+|+.|||||||++.+.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7899999999999999999865
No 387
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.53 E-value=0.0015 Score=45.57 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
.|+++|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 388
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.53 E-value=0.0016 Score=47.49 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
..++.|+|.|++|+||||+.+.+..
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998874
No 389
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.50 E-value=0.0015 Score=48.82 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.|+++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999999865
No 390
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.49 E-value=0.002 Score=46.83 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=22.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
....-|+|.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44567999999999999999988765
No 391
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.49 E-value=0.0019 Score=44.85 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
-.|+++|.+||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 392
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.48 E-value=0.0019 Score=44.31 Aligned_cols=21 Identities=43% Similarity=0.487 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 393
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.47 E-value=0.0015 Score=51.84 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.|+|+|+.|||||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998864
No 394
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.46 E-value=0.0013 Score=45.72 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=15.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
..|++.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999874
No 395
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.44 E-value=0.00098 Score=51.72 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988764
No 396
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.43 E-value=0.0017 Score=49.04 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999998765
No 397
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.42 E-value=0.0017 Score=51.11 Aligned_cols=22 Identities=41% Similarity=0.768 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|++|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999998864
No 398
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.41 E-value=0.005 Score=41.11 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..|.+.|++|+|||++.+.+...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 45899999999999999987654
No 399
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.40 E-value=0.0016 Score=45.04 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.-.+++.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346799999999999999988754
No 400
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.39 E-value=0.0017 Score=52.89 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.|+|+|++|||||||++.+++.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998643
No 401
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.38 E-value=0.0032 Score=48.94 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
.....-.|+++|+.||||||+++.+.+
T Consensus 153 ~~~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 153 GFRKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp CSSSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred ecCCCeEEEEEcCCCChHHHHHHHHHh
Confidence 344556799999999999999998874
No 402
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.37 E-value=0.0021 Score=47.44 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
+-.|++.|++|+|||+|++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999764
No 403
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.37 E-value=0.0022 Score=48.08 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=21.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
.....|+|.|++||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998873
No 404
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.36 E-value=0.0021 Score=46.00 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999987
No 405
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.36 E-value=0.0021 Score=49.73 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999998774
No 406
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.35 E-value=0.0024 Score=48.17 Aligned_cols=22 Identities=45% Similarity=0.555 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 407
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.35 E-value=0.0023 Score=46.27 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.-.+++.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988754
No 408
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.34 E-value=0.0025 Score=45.13 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
-.|++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999988754
No 409
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.34 E-value=0.0022 Score=46.64 Aligned_cols=22 Identities=14% Similarity=0.271 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999999874
No 410
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.34 E-value=0.0019 Score=45.99 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
-.+++.|+||+|||+++..+...
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999998888753
No 411
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.34 E-value=0.0032 Score=45.75 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
....|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998754
No 412
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.33 E-value=0.0022 Score=45.82 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...|++.|.+||||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998865
No 413
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0017 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
+++|+|+.|||||||++.+.+-.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999988653
No 414
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.31 E-value=0.0029 Score=51.14 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=22.6
Q ss_pred CCCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 9 NSYDLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 9 ~~~~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
......-.|+|+|+.|||||||++.|.+
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHH
Confidence 3344556799999999999999998864
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.30 E-value=0.0021 Score=47.45 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
-.|+++|++|+||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 416
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.29 E-value=0.0033 Score=44.38 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
....|++.|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999988754
No 417
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.27 E-value=0.0025 Score=44.25 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999864
No 418
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.25 E-value=0.0018 Score=47.95 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=21.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.+...|+|.|.+||||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 45578999999999999999988754
No 419
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.24 E-value=0.0017 Score=49.61 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
-++|+|+.|||||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 46889999999999999999653
No 420
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.22 E-value=0.0032 Score=47.52 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=21.6
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..+..+++.|+||+|||+|++.+...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34557788899999999999999864
No 421
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0049 Score=44.49 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=19.4
Q ss_pred EEEEE--cCCCCcHHHHHHHHhhCC
Q 028300 16 KILLI--GDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~--G~~~~GKssli~~l~~~~ 38 (211)
||+|+ |+++.|||.|++++++..
T Consensus 29 kilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 29 KILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred ceEEEecCcccccHHHHHHHHhccc
Confidence 55555 999999999999999874
No 422
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.18 E-value=0.0028 Score=49.59 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.9
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
..-.|+++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344789999999999999999885
No 423
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.17 E-value=0.0035 Score=45.51 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
..+++|+|+|||||||+...|..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 46899999999999999998863
No 424
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.14 E-value=0.0036 Score=45.60 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=22.0
Q ss_pred CCceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 10 SYDLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 10 ~~~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
.+.....|+++|++||||||+.+.|..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 445567899999999999999998874
No 425
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.12 E-value=0.0072 Score=45.89 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=20.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...-.|+++|++|+||||++..+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHH
Confidence 3445789999999999999998863
No 426
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.08 E-value=0.0036 Score=41.89 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~ 38 (211)
...|.+.|++|+|||++.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3468999999999999999987653
No 427
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.08 E-value=0.0036 Score=50.06 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
+++++|++|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 78999999999999999998764
No 428
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.07 E-value=0.0051 Score=48.85 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=21.9
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
....-|+++|++||||||+.+.|...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34567899999999999999998753
No 429
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.06 E-value=0.0038 Score=46.64 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=21.4
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..-.+++.|++|+|||+|++.+...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3446999999999999999999764
No 430
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.06 E-value=0.0036 Score=42.22 Aligned_cols=19 Identities=53% Similarity=0.810 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 028300 17 ILLIGDSGVGKSSLLVSFI 35 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~ 35 (211)
.+|+|+.|+|||||+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999875
No 431
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.06 E-value=0.0037 Score=46.02 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.3
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..-.|++.|++|+|||++++.+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999998763
No 432
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.06 E-value=0.0039 Score=46.95 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.-.|++.|++|+|||+|++.+...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457899999999999999999864
No 433
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.06 E-value=0.0037 Score=51.31 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 434
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.05 E-value=0.0037 Score=45.03 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++|.|++|+|||+|++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988743
No 435
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.04 E-value=0.0035 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
=.++|+|+.|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 3679999999999999998873
No 436
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.04 E-value=0.0035 Score=46.83 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999875
No 437
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.04 E-value=0.0038 Score=44.36 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028300 17 ILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~ 37 (211)
+++.|++|+|||+|++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988753
No 438
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.01 E-value=0.0046 Score=43.81 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998864
No 439
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.98 E-value=0.0039 Score=47.18 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.-.|++.|++|+|||+|++.+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346899999999999999999864
No 440
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.96 E-value=0.0037 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57999999999999999988754
No 441
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.95 E-value=0.004 Score=51.69 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 6899999999999999988865
No 442
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.93 E-value=0.0042 Score=47.43 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
-.+++.|++|+|||+|++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999998764
No 443
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.92 E-value=0.0048 Score=46.68 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=68.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhCCC------------CCCCCcc-----------ceeeEEEE----E--EE-CCEEEE
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISSSV------------DDLSPTI-----------GVDFKIKL----L--TV-AGKRLK 63 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~~~------------~~~~~~~-----------~~~~~~~~----~--~~-~~~~~~ 63 (211)
.-.|+++|++|+||||++..|...-. +...+.. +....... . .+ .-....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~d 184 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEYD 184 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCCC
Confidence 34789999999999999998862210 0110000 00000000 0 00 002346
Q ss_pred EEEEeCCChhhhcc--c--hhhhcc--CCcEEEEEEECCChhhHHHHHHHHHHHhhhhccCCCccEEEEeecCCCCCCcc
Q 028300 64 LTIWDTAGQERFRT--L--TSSYYR--GAQGIILVYDVTRRETFTNLSDVWAKEVDLYSTNQDCVKMLVGNKVDRDSERV 137 (211)
Q Consensus 64 ~~l~D~~g~~~~~~--~--~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p~viv~nK~Dl~~~~~ 137 (211)
+.|+||+|...... + ....+. ..+..++|+|++.. ...+.. +...+. ..+ ..-+|+||.|.....
T Consensus 185 lvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~-~~~~~~----~l~-~~giVltk~D~~~~~- 255 (296)
T 2px0_A 185 HVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKH-IVKRFS----SVP-VNQYIFTKIDETTSL- 255 (296)
T ss_dssp EEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHH-HTTTTS----SSC-CCEEEEECTTTCSCC-
T ss_pred EEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHH-HHHHHh----cCC-CCEEEEeCCCcccch-
Confidence 88999999654321 1 112232 36788999987753 223332 222222 112 235677999975321
Q ss_pred cCHHHHHHHHHHcCCeEEEee
Q 028300 138 VSREEGIALAKEHGSLFLECS 158 (211)
Q Consensus 138 v~~~~~~~~~~~~~~~~~~~S 158 (211)
..+.......+.|+..+.
T Consensus 256 ---g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 256 ---GSVFNILAESKIGVGFMT 273 (296)
T ss_dssp ---HHHHHHHHTCSCCCSEEC
T ss_pred ---hHHHHHHHHHCcCEEEEE
Confidence 244556667777765543
No 444
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.0043 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58999999999999999988754
No 445
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.87 E-value=0.0048 Score=44.90 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
-++++|++|+|||||+.+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999887764
No 446
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.86 E-value=0.0062 Score=46.03 Aligned_cols=24 Identities=17% Similarity=0.499 Sum_probs=20.1
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
....|++.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999987654
No 447
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.86 E-value=0.0046 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 78999999999999999988653
No 448
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.85 E-value=0.0074 Score=44.83 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.....+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 44568999999999999999998864
No 449
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.81 E-value=0.0051 Score=51.21 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 68999999999999999988754
No 450
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.80 E-value=0.0056 Score=50.26 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++|+|+.|+|||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999998754
No 451
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.80 E-value=0.0052 Score=43.52 Aligned_cols=24 Identities=38% Similarity=0.707 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~ 38 (211)
..|+|+|++|+|||+|...|...-
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998653
No 452
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.78 E-value=0.0058 Score=50.92 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998754
No 453
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.78 E-value=0.0053 Score=47.58 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
--+.|+|++|+|||||+..++..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999875
No 454
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.75 E-value=0.0057 Score=50.20 Aligned_cols=23 Identities=22% Similarity=0.483 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998754
No 455
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.75 E-value=0.0063 Score=42.40 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028300 17 ILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~ 37 (211)
|.|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999854
No 456
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.73 E-value=0.0056 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.-.++|.|++|+|||+|++.+...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998864
No 457
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.0059 Score=48.56 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.+-.|++.||||+|||+|++++.+.
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3446999999999999999999864
No 458
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.72 E-value=0.0061 Score=45.95 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999998754
No 459
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.70 E-value=0.0049 Score=47.54 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHhh
Q 028300 17 ILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~ 36 (211)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 460
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.69 E-value=0.006 Score=46.93 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028300 17 ILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~ 37 (211)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998765
No 461
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.68 E-value=0.0042 Score=51.70 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|+.|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988865
No 462
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.68 E-value=0.007 Score=48.20 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.5
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..+-.|++.||||+|||+|++++.+.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 34567999999999999999999865
No 463
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.67 E-value=0.0064 Score=46.77 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhh
Q 028300 15 FKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~ 36 (211)
..|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5799999999999999998874
No 464
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.67 E-value=0.0063 Score=46.55 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.-.|++.|+||+|||+|++.+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999999864
No 465
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.67 E-value=0.0064 Score=47.40 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=18.5
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHh
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFI 35 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~ 35 (211)
..+ .+|+|+.|+|||||++.++
T Consensus 23 ~g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 23 SGI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp SEE-EEEECCTTSSHHHHHHHHH
T ss_pred CCe-EEEECCCCCCHHHHHHHHH
Confidence 344 4589999999999999986
No 466
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.66 E-value=0.0046 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++++|+.|+|||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 78999999999999999887653
No 467
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.66 E-value=0.0086 Score=45.76 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..|+|+|++|||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998753
No 468
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.65 E-value=0.0072 Score=47.09 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998865
No 469
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.65 E-value=0.0039 Score=51.68 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|+.|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 7899999999999999977765
No 470
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.63 E-value=0.0073 Score=46.14 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
...|++.|+||+|||+|++.+...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999764
No 471
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.61 E-value=0.0077 Score=45.51 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 47899999999999999988764
No 472
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.60 E-value=0.0079 Score=45.74 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.-.+++.|++|+|||+|+..+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988754
No 473
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.60 E-value=0.0086 Score=43.65 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..|++.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999998754
No 474
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.0072 Score=48.17 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.4
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..+-.|++.||||+|||+|++++.+.
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34558999999999999999999865
No 475
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.0077 Score=50.15 Aligned_cols=23 Identities=22% Similarity=0.600 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCC
Q 028300 17 ILLIGDSGVGKSSLLVSFISSSV 39 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~~~ 39 (211)
++++|+.|+|||||++.+.+...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 79999999999999999987643
No 476
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.56 E-value=0.0053 Score=51.01 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999988754
No 477
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.52 E-value=0.0098 Score=46.00 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFI 35 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~ 35 (211)
..+|+++|++|+||||+.+.|.
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHH
Confidence 3579999999999999998765
No 478
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.007 Score=46.20 Aligned_cols=25 Identities=8% Similarity=0.052 Sum_probs=21.6
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..-.+.+.|+||+|||++++.++..
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999998754
No 479
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.48 E-value=0.0075 Score=43.16 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
...|++.|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 480
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.47 E-value=0.0036 Score=47.19 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=17.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
.+.|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998864
No 481
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.47 E-value=0.009 Score=42.85 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhh
Q 028300 14 SFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~ 36 (211)
..-|+|.|++||||||+++.|..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999998864
No 482
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.0083 Score=47.21 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.+-.|++.||||+|||+|++++.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999864
No 483
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.45 E-value=0.0084 Score=46.10 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhhC
Q 028300 17 ILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~ 37 (211)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988754
No 484
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.45 E-value=0.012 Score=44.81 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.-|+|+||+|||||+|...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 35889999999999999999754
No 485
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.44 E-value=0.0037 Score=46.28 Aligned_cols=22 Identities=32% Similarity=0.566 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhhC
Q 028300 16 KILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~ 37 (211)
.|++.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999998753
No 486
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.42 E-value=0.0075 Score=46.87 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.2
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3447899999999999999998754
No 487
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.42 E-value=0.0069 Score=49.82 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
..-.|+++|++|||||||++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4467999999999999999998764
No 488
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.41 E-value=0.015 Score=47.47 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=20.8
Q ss_pred ceeeEEEEEcCCCCcHHHHHHHHh
Q 028300 12 DLSFKILLIGDSGVGKSSLLVSFI 35 (211)
Q Consensus 12 ~~~~~I~v~G~~~~GKssli~~l~ 35 (211)
....-|+++|.+|+||||+.+.|.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La 56 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLT 56 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 445679999999999999999885
No 489
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.41 E-value=0.0015 Score=47.43 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhhCCC
Q 028300 17 ILLIGDSGVGKSSLLVSFISSSV 39 (211)
Q Consensus 17 I~v~G~~~~GKssli~~l~~~~~ 39 (211)
++|+|+.|+|||||++.+.+...
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 46889999999999999886543
No 490
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.38 E-value=0.0096 Score=46.14 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
-.+++.|++|+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998754
No 491
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.36 E-value=0.013 Score=44.39 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHhhC
Q 028300 14 SFKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 14 ~~~I~v~G~~~~GKssli~~l~~~ 37 (211)
+.-|+|+|++|||||+|...|...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 346889999999999999999754
No 492
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.34 E-value=0.0092 Score=47.72 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
-.+++.|++|+|||+|++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988754
No 493
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.32 E-value=0.01 Score=46.11 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
-.|++.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998864
No 494
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.31 E-value=0.014 Score=44.87 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
.-|+|+|++|||||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999854
No 495
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.31 E-value=0.012 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSSV 39 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~~ 39 (211)
.++++|+.|+|||||++.+.++..
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999997644
No 496
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.30 E-value=0.0096 Score=46.99 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhh
Q 028300 16 KILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~ 36 (211)
-+.|+|++|+|||||+..++.
T Consensus 180 i~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHH
Confidence 578999999999999998763
No 497
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.30 E-value=0.0067 Score=53.07 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhhCC
Q 028300 16 KILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 16 ~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.++|+|+.|+|||||++.+.+..
T Consensus 701 ivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998653
No 498
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.30 E-value=0.013 Score=40.43 Aligned_cols=24 Identities=29% Similarity=0.659 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhCC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISSS 38 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~~ 38 (211)
.-|++.|++|+||||+...|....
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 368999999999999999998753
No 499
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.27 E-value=0.0099 Score=48.27 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhhC
Q 028300 15 FKILLIGDSGVGKSSLLVSFISS 37 (211)
Q Consensus 15 ~~I~v~G~~~~GKssli~~l~~~ 37 (211)
-.|+++|++|+|||+|++.+.+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999999864
No 500
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.27 E-value=0.0075 Score=43.75 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=17.7
Q ss_pred eeeEEEEEcCCCCcHHHHHHHHhh
Q 028300 13 LSFKILLIGDSGVGKSSLLVSFIS 36 (211)
Q Consensus 13 ~~~~I~v~G~~~~GKssli~~l~~ 36 (211)
+..-|+|.|++||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
Done!