Query 028302
Match_columns 210
No_of_seqs 132 out of 1264
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 09:24:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08410 2-hydroxyacid dehydro 100.0 2.5E-41 5.4E-46 288.0 19.9 161 46-210 33-212 (311)
2 PLN02928 oxidoreductase family 100.0 2.7E-41 5.8E-46 291.5 19.5 203 7-210 13-242 (347)
3 COG0111 SerA Phosphoglycerate 100.0 2E-41 4.3E-46 288.9 16.2 191 12-210 3-213 (324)
4 PRK06487 glycerate dehydrogena 100.0 1.1E-40 2.4E-45 284.7 19.2 194 13-210 1-213 (317)
5 COG1052 LdhA Lactate dehydroge 100.0 2.1E-40 4.6E-45 282.4 18.3 159 48-210 37-216 (324)
6 PRK06932 glycerate dehydrogena 100.0 1.3E-40 2.8E-45 283.8 16.2 162 45-210 34-213 (314)
7 PRK15409 bifunctional glyoxyla 100.0 1.1E-40 2.4E-45 285.1 15.5 191 12-210 2-216 (323)
8 PRK11790 D-3-phosphoglycerate 100.0 1.4E-38 3E-43 279.9 19.1 197 7-210 5-219 (409)
9 PRK13243 glyoxylate reductase; 100.0 1.3E-38 2.9E-43 273.6 15.3 190 13-210 3-220 (333)
10 PRK13581 D-3-phosphoglycerate 100.0 2.5E-36 5.4E-41 273.3 18.0 190 13-210 1-210 (526)
11 PRK07574 formate dehydrogenase 100.0 2.2E-36 4.7E-41 263.0 16.2 160 47-210 82-264 (385)
12 PLN03139 formate dehydrogenase 100.0 3.3E-36 7.1E-41 261.8 16.9 160 47-210 89-271 (386)
13 TIGR01327 PGDH D-3-phosphoglyc 100.0 5.4E-36 1.2E-40 271.1 18.5 162 45-210 30-209 (525)
14 PLN02306 hydroxypyruvate reduc 100.0 9.6E-36 2.1E-40 259.4 18.6 194 11-210 14-252 (386)
15 PRK12480 D-lactate dehydrogena 100.0 4.1E-36 8.9E-41 257.7 16.0 193 12-210 1-214 (330)
16 KOG0068 D-3-phosphoglycerate d 100.0 1.2E-35 2.6E-40 247.6 14.9 190 14-210 8-216 (406)
17 PRK08605 D-lactate dehydrogena 100.0 3E-34 6.6E-39 246.5 17.5 192 13-210 2-216 (332)
18 PRK15469 ghrA bifunctional gly 100.0 8.1E-34 1.8E-38 241.7 17.5 187 13-210 1-206 (312)
19 PRK06436 glycerate dehydrogena 100.0 8.2E-34 1.8E-38 240.6 16.6 147 53-210 32-189 (303)
20 PRK15438 erythronate-4-phospha 100.0 9.2E-33 2E-37 239.5 18.2 171 13-210 1-187 (378)
21 PRK00257 erythronate-4-phospha 100.0 3.9E-32 8.5E-37 236.1 18.3 171 13-210 1-187 (381)
22 KOG0069 Glyoxylate/hydroxypyru 100.0 1.4E-31 3E-36 226.7 12.3 156 51-210 56-233 (336)
23 PF02826 2-Hacid_dh_C: D-isome 99.9 2.9E-22 6.4E-27 158.1 6.6 89 121-210 1-107 (178)
24 PF00389 2-Hacid_dh: D-isomer 99.7 1E-17 2.3E-22 125.9 6.1 98 15-120 1-101 (133)
25 TIGR02853 spore_dpaA dipicolin 99.7 2.6E-16 5.6E-21 132.9 10.7 128 52-204 51-220 (287)
26 KOG0067 Transcription factor C 99.7 6.4E-17 1.4E-21 137.1 6.7 145 62-210 81-249 (435)
27 PRK08306 dipicolinate synthase 99.4 1.3E-11 2.7E-16 104.9 12.8 132 51-203 51-220 (296)
28 PTZ00075 Adenosylhomocysteinas 99.2 3.1E-11 6.7E-16 107.4 8.9 97 75-186 189-287 (476)
29 PRK13403 ketol-acid reductoiso 99.0 4.7E-10 1E-14 95.4 3.6 60 148-209 11-85 (335)
30 PRK05476 S-adenosyl-L-homocyst 98.3 2.1E-06 4.5E-11 76.3 6.6 97 76-187 148-246 (425)
31 PRK05479 ketol-acid reductoiso 98.2 2.1E-06 4.5E-11 73.8 4.7 57 148-204 12-84 (330)
32 PLN02494 adenosylhomocysteinas 98.1 2.4E-06 5.1E-11 76.4 4.5 39 149-187 250-288 (477)
33 cd01075 NAD_bind_Leu_Phe_Val_D 98.0 5.7E-06 1.2E-10 66.4 4.6 39 148-186 23-61 (200)
34 PF00670 AdoHcyase_NAD: S-aden 97.9 8.1E-06 1.7E-10 63.1 3.5 39 148-186 18-56 (162)
35 TIGR00936 ahcY adenosylhomocys 97.9 1E-05 2.2E-10 71.5 4.4 38 149-186 191-228 (406)
36 TIGR00465 ilvC ketol-acid redu 97.9 1.7E-05 3.6E-10 68.0 5.0 53 151-203 1-69 (314)
37 cd00401 AdoHcyase S-adenosyl-L 97.8 4.5E-05 9.8E-10 67.6 6.2 40 148-187 197-236 (413)
38 PF03446 NAD_binding_2: NAD bi 97.8 1E-05 2.2E-10 62.7 1.8 51 154-204 2-68 (163)
39 PRK14619 NAD(P)H-dependent gly 97.7 5.9E-05 1.3E-09 64.4 5.3 52 152-203 3-57 (308)
40 PRK05225 ketol-acid reductoiso 97.7 2.8E-05 6.1E-10 69.1 3.2 58 148-205 31-109 (487)
41 PF07991 IlvN: Acetohydroxy ac 97.4 0.0001 2.2E-09 56.9 3.0 52 151-202 2-69 (165)
42 PLN02712 arogenate dehydrogena 97.4 0.00014 3.1E-09 68.3 4.5 39 148-186 364-402 (667)
43 cd01076 NAD_bind_1_Glu_DH NAD( 97.4 0.00044 9.6E-09 56.6 6.0 37 149-185 27-63 (227)
44 TIGR00518 alaDH alanine dehydr 97.3 0.0047 1E-07 54.2 12.1 127 55-186 66-200 (370)
45 PRK11199 tyrA bifunctional cho 97.2 0.0011 2.5E-08 58.1 7.6 53 152-204 97-153 (374)
46 PLN02256 arogenate dehydrogena 97.2 0.00043 9.4E-09 59.1 4.5 36 151-186 34-69 (304)
47 cd05313 NAD_bind_2_Glu_DH NAD( 97.2 0.0011 2.3E-08 55.2 6.6 37 148-184 33-69 (254)
48 cd05211 NAD_bind_Glu_Leu_Phe_V 97.1 0.0013 2.8E-08 53.6 5.9 36 149-184 19-54 (217)
49 cd05191 NAD_bind_amino_acid_DH 97.1 0.0017 3.7E-08 44.8 5.6 36 149-184 19-55 (86)
50 PF03807 F420_oxidored: NADP o 97.0 0.00072 1.6E-08 47.3 2.9 33 155-187 1-37 (96)
51 PRK09414 glutamate dehydrogena 96.9 0.0021 4.5E-08 57.6 6.2 35 148-182 227-261 (445)
52 PRK08818 prephenate dehydrogen 96.9 0.002 4.3E-08 56.5 5.9 53 151-203 2-61 (370)
53 PF01488 Shikimate_DH: Shikima 96.8 0.0012 2.6E-08 49.6 3.5 38 149-186 8-46 (135)
54 PLN02712 arogenate dehydrogena 96.8 0.0017 3.6E-08 61.2 4.9 39 147-185 46-84 (667)
55 PRK09424 pntA NAD(P) transhydr 96.8 0.014 3.1E-07 53.3 10.5 123 55-186 65-198 (509)
56 PRK14031 glutamate dehydrogena 96.8 0.0034 7.4E-08 56.2 6.4 37 148-184 223-259 (444)
57 TIGR00561 pntA NAD(P) transhyd 96.7 0.025 5.4E-07 51.6 11.8 125 55-186 64-197 (511)
58 PLN02477 glutamate dehydrogena 96.7 0.0038 8.2E-08 55.4 6.3 37 148-184 201-237 (410)
59 PLN02545 3-hydroxybutyryl-CoA 96.7 0.0018 3.9E-08 54.8 4.0 33 154-186 5-37 (295)
60 PRK14194 bifunctional 5,10-met 96.7 0.0029 6.3E-08 53.8 5.2 56 148-203 154-212 (301)
61 KOG0023 Alcohol dehydrogenase, 96.7 0.0016 3.5E-08 55.5 3.5 35 152-186 181-215 (360)
62 cd01080 NAD_bind_m-THF_DH_Cycl 96.7 0.0027 5.9E-08 49.6 4.6 54 149-202 40-96 (168)
63 COG0499 SAM1 S-adenosylhomocys 96.6 0.0022 4.7E-08 55.5 3.9 38 149-186 205-242 (420)
64 PRK07502 cyclohexadienyl dehyd 96.6 0.0037 8E-08 53.2 5.3 35 152-186 5-41 (307)
65 PRK14189 bifunctional 5,10-met 96.6 0.0038 8.3E-08 52.7 4.9 55 148-202 153-210 (285)
66 PRK07066 3-hydroxybutyryl-CoA 96.6 0.0024 5.2E-08 55.0 3.8 34 154-187 8-41 (321)
67 KOG0409 Predicted dehydrogenas 96.5 0.0024 5.3E-08 53.9 3.5 56 149-204 31-102 (327)
68 TIGR02356 adenyl_thiF thiazole 96.5 0.00086 1.9E-08 53.9 0.8 44 142-185 10-54 (202)
69 PF13241 NAD_binding_7: Putati 96.5 0.0055 1.2E-07 43.8 4.9 37 150-186 4-40 (103)
70 PRK01710 murD UDP-N-acetylmura 96.5 0.0035 7.7E-08 56.4 4.7 38 149-186 10-47 (458)
71 PRK14030 glutamate dehydrogena 96.5 0.0072 1.6E-07 54.1 6.5 34 148-181 223-256 (445)
72 cd01065 NAD_bind_Shikimate_DH 96.5 0.0037 8.1E-08 47.4 4.1 37 150-186 16-53 (155)
73 PLN02858 fructose-bisphosphate 96.5 0.0013 2.8E-08 66.5 1.9 53 153-205 324-392 (1378)
74 COG0059 IlvC Ketol-acid reduct 96.4 0.0056 1.2E-07 51.8 4.9 53 150-202 15-83 (338)
75 COG0287 TyrA Prephenate dehydr 96.4 0.006 1.3E-07 51.5 5.0 34 153-186 3-38 (279)
76 PRK05690 molybdopterin biosynt 96.3 0.0035 7.5E-08 51.9 3.4 53 133-185 12-65 (245)
77 TIGR01035 hemA glutamyl-tRNA r 96.3 0.0042 9.1E-08 55.4 4.1 38 150-187 177-215 (417)
78 cd00757 ThiF_MoeB_HesA_family 96.3 0.0014 3.1E-08 53.5 0.8 44 142-185 10-54 (228)
79 PLN02272 glyceraldehyde-3-phos 96.2 0.0043 9.4E-08 55.0 3.6 33 154-186 86-120 (421)
80 cd01492 Aos1_SUMO Ubiquitin ac 96.2 0.003 6.6E-08 50.5 2.4 43 143-185 11-54 (197)
81 PRK06035 3-hydroxyacyl-CoA deh 96.2 0.0053 1.2E-07 51.9 4.0 33 154-186 4-36 (291)
82 PRK14175 bifunctional 5,10-met 96.2 0.0067 1.4E-07 51.3 4.4 55 148-202 153-210 (286)
83 PRK05472 redox-sensing transcr 96.1 0.0084 1.8E-07 48.5 4.3 58 112-185 59-119 (213)
84 PLN02858 fructose-bisphosphate 96.0 0.0039 8.4E-08 63.2 2.6 54 152-205 3-72 (1378)
85 PRK12475 thiamine/molybdopteri 96.0 0.0051 1.1E-07 53.4 3.0 45 142-186 13-58 (338)
86 PRK06719 precorrin-2 dehydroge 96.0 0.011 2.3E-07 45.7 4.3 41 147-187 7-47 (157)
87 PLN02350 phosphogluconate dehy 96.0 0.006 1.3E-07 55.5 3.4 33 154-186 7-39 (493)
88 PRK06130 3-hydroxybutyryl-CoA 96.0 0.0082 1.8E-07 51.1 4.0 33 154-186 5-37 (311)
89 PRK14188 bifunctional 5,10-met 96.0 0.011 2.5E-07 50.2 4.7 57 148-204 153-212 (296)
90 PRK00045 hemA glutamyl-tRNA re 95.9 0.0085 1.9E-07 53.5 4.1 37 150-186 179-216 (423)
91 PRK13302 putative L-aspartate 95.9 0.0096 2.1E-07 50.0 4.1 36 151-186 4-42 (271)
92 PRK00258 aroE shikimate 5-dehy 95.9 0.011 2.3E-07 49.8 4.4 38 149-186 119-157 (278)
93 PTZ00079 NADP-specific glutama 95.9 0.021 4.6E-07 51.2 6.4 37 148-184 232-268 (454)
94 PF00208 ELFV_dehydrog: Glutam 95.9 0.025 5.4E-07 46.8 6.4 35 149-183 28-62 (244)
95 PRK07530 3-hydroxybutyryl-CoA 95.9 0.0091 2E-07 50.4 3.9 33 154-186 5-37 (292)
96 PRK08328 hypothetical protein; 95.9 0.0088 1.9E-07 49.0 3.7 43 143-185 17-60 (231)
97 PRK06718 precorrin-2 dehydroge 95.9 0.012 2.5E-07 47.4 4.2 40 148-187 5-44 (202)
98 PRK11064 wecC UDP-N-acetyl-D-m 95.9 0.0075 1.6E-07 53.7 3.4 34 154-187 4-37 (415)
99 PF10727 Rossmann-like: Rossma 95.8 0.0048 1E-07 46.0 1.8 35 151-185 8-43 (127)
100 PRK14618 NAD(P)H-dependent gly 95.8 0.011 2.3E-07 50.9 4.1 34 153-186 4-37 (328)
101 PRK07531 bifunctional 3-hydrox 95.8 0.0094 2E-07 54.3 3.8 34 154-187 5-38 (495)
102 PRK07819 3-hydroxybutyryl-CoA 95.8 0.01 2.2E-07 50.2 3.6 34 154-187 6-39 (286)
103 PRK05808 3-hydroxybutyryl-CoA 95.8 0.0091 2E-07 50.2 3.3 33 154-186 4-36 (282)
104 PRK00683 murD UDP-N-acetylmura 95.8 0.015 3.1E-07 51.8 4.8 35 153-187 3-37 (418)
105 PRK07688 thiamine/molybdopteri 95.7 0.0076 1.6E-07 52.3 2.8 44 142-185 13-57 (339)
106 cd05213 NAD_bind_Glutamyl_tRNA 95.7 0.011 2.3E-07 50.7 3.7 37 151-187 176-213 (311)
107 TIGR01470 cysG_Nterm siroheme 95.7 0.013 2.7E-07 47.3 3.9 40 149-188 5-44 (205)
108 COG1064 AdhP Zn-dependent alco 95.7 0.0097 2.1E-07 51.4 3.3 36 153-188 167-202 (339)
109 PRK07679 pyrroline-5-carboxyla 95.7 0.015 3.2E-07 48.9 4.3 35 152-186 2-40 (279)
110 cd01078 NAD_bind_H4MPT_DH NADP 95.7 0.054 1.2E-06 42.9 7.3 39 148-186 23-62 (194)
111 PF13478 XdhC_C: XdhC Rossmann 95.7 0.01 2.2E-07 44.8 2.9 32 156-187 1-32 (136)
112 PF00044 Gp_dh_N: Glyceraldehy 95.6 0.013 2.8E-07 44.9 3.5 32 155-186 2-34 (151)
113 PRK02472 murD UDP-N-acetylmura 95.6 0.018 3.9E-07 51.4 4.9 36 151-186 3-38 (447)
114 PRK09310 aroDE bifunctional 3- 95.5 0.017 3.8E-07 52.4 4.5 39 148-186 327-365 (477)
115 COG0334 GdhA Glutamate dehydro 95.5 0.019 4E-07 50.7 4.3 39 149-187 203-241 (411)
116 PRK08293 3-hydroxybutyryl-CoA 95.5 0.017 3.7E-07 48.7 3.9 33 154-186 4-36 (287)
117 PRK05597 molybdopterin biosynt 95.4 0.011 2.3E-07 51.7 2.6 52 134-185 9-61 (355)
118 PRK14106 murD UDP-N-acetylmura 95.4 0.02 4.2E-07 51.2 4.4 37 150-186 2-38 (450)
119 PRK01390 murD UDP-N-acetylmura 95.4 0.02 4.3E-07 51.5 4.4 37 150-186 6-42 (460)
120 TIGR02354 thiF_fam2 thiamine b 95.4 0.019 4.1E-07 46.1 3.8 38 148-185 16-54 (200)
121 PF00899 ThiF: ThiF family; I 95.4 0.014 3.1E-07 43.5 2.9 34 152-185 1-35 (135)
122 PRK04690 murD UDP-N-acetylmura 95.4 0.022 4.7E-07 51.6 4.5 35 151-185 6-40 (468)
123 PTZ00431 pyrroline carboxylate 95.3 0.029 6.3E-07 46.7 4.9 35 153-187 3-41 (260)
124 PLN00203 glutamyl-tRNA reducta 95.3 0.02 4.3E-07 52.5 4.1 37 150-186 263-300 (519)
125 PRK14806 bifunctional cyclohex 95.3 0.017 3.6E-07 55.1 3.8 33 154-186 4-38 (735)
126 PRK02006 murD UDP-N-acetylmura 95.3 0.023 5E-07 51.7 4.5 37 150-186 4-40 (498)
127 PRK03369 murD UDP-N-acetylmura 95.3 0.022 4.7E-07 51.8 4.3 35 151-185 10-44 (488)
128 PRK14192 bifunctional 5,10-met 95.3 0.032 7E-07 47.2 5.1 55 148-202 154-211 (283)
129 PRK00141 murD UDP-N-acetylmura 95.3 0.023 5.1E-07 51.4 4.4 38 149-186 11-48 (473)
130 PRK05600 thiamine biosynthesis 95.2 0.013 2.8E-07 51.5 2.6 54 132-185 20-74 (370)
131 cd05311 NAD_bind_2_malic_enz N 95.2 0.052 1.1E-06 44.4 5.9 39 148-186 20-61 (226)
132 COG0771 MurD UDP-N-acetylmuram 95.2 0.028 6E-07 50.5 4.5 39 150-188 4-42 (448)
133 PF00070 Pyr_redox: Pyridine n 95.2 0.033 7.1E-07 37.5 3.9 34 155-188 1-34 (80)
134 TIGR02964 xanthine_xdhC xanthi 95.2 0.028 6.2E-07 46.5 4.2 35 153-187 100-134 (246)
135 PRK14179 bifunctional 5,10-met 95.1 0.027 5.9E-07 47.6 4.1 56 148-203 153-211 (284)
136 KOG1370 S-adenosylhomocysteine 95.0 0.027 5.9E-07 47.9 3.7 37 150-186 211-247 (434)
137 PRK06249 2-dehydropantoate 2-r 95.0 0.028 6E-07 48.0 3.8 34 153-186 5-38 (313)
138 PRK08268 3-hydroxy-acyl-CoA de 94.9 0.029 6.3E-07 51.3 4.0 34 154-187 8-41 (507)
139 TIGR02279 PaaC-3OHAcCoADH 3-hy 94.9 0.029 6.2E-07 51.3 3.9 34 153-186 5-38 (503)
140 PF01262 AlaDh_PNT_C: Alanine 94.8 0.032 7E-07 43.3 3.6 39 148-186 15-53 (168)
141 PRK12549 shikimate 5-dehydroge 94.8 0.039 8.4E-07 46.7 4.3 37 150-186 124-161 (284)
142 TIGR00507 aroE shikimate 5-deh 94.8 0.044 9.6E-07 45.8 4.4 37 150-186 114-150 (270)
143 PRK04308 murD UDP-N-acetylmura 94.8 0.042 9.1E-07 49.2 4.6 37 151-187 3-39 (445)
144 PRK07411 hypothetical protein; 94.7 0.02 4.4E-07 50.6 2.4 44 142-185 27-71 (390)
145 TIGR02355 moeB molybdopterin s 94.7 0.013 2.9E-07 48.3 1.2 39 147-185 18-57 (240)
146 PRK04148 hypothetical protein; 94.7 0.036 7.8E-07 41.6 3.3 35 152-187 16-50 (134)
147 TIGR01921 DAP-DH diaminopimela 94.7 0.046 1E-06 47.1 4.3 34 153-186 3-38 (324)
148 PRK01368 murD UDP-N-acetylmura 94.6 0.055 1.2E-06 48.8 5.0 33 152-185 5-37 (454)
149 PRK15182 Vi polysaccharide bio 94.6 0.033 7.1E-07 49.8 3.5 32 154-186 7-38 (425)
150 cd01485 E1-1_like Ubiquitin ac 94.5 0.023 5.1E-07 45.4 2.2 43 143-185 9-52 (198)
151 PRK00421 murC UDP-N-acetylmura 94.5 0.051 1.1E-06 48.9 4.5 38 150-187 4-42 (461)
152 PRK00676 hemA glutamyl-tRNA re 94.5 0.051 1.1E-06 47.1 4.3 39 149-187 170-209 (338)
153 PRK08762 molybdopterin biosynt 94.5 0.032 7E-07 49.0 3.1 44 142-185 124-168 (376)
154 PRK03803 murD UDP-N-acetylmura 94.4 0.056 1.2E-06 48.4 4.6 35 152-186 5-39 (448)
155 PRK01438 murD UDP-N-acetylmura 94.4 0.055 1.2E-06 48.9 4.4 38 149-186 12-49 (480)
156 PLN02948 phosphoribosylaminoim 94.2 0.077 1.7E-06 49.3 5.1 40 148-187 17-56 (577)
157 PRK07878 molybdopterin biosynt 94.2 0.031 6.6E-07 49.5 2.2 44 142-185 31-75 (392)
158 cd01483 E1_enzyme_family Super 94.1 0.062 1.3E-06 40.3 3.6 31 155-185 1-32 (143)
159 PRK10792 bifunctional 5,10-met 94.1 0.08 1.7E-06 44.8 4.6 54 148-201 154-210 (285)
160 PRK12548 shikimate 5-dehydroge 94.1 0.059 1.3E-06 45.6 3.8 37 150-186 123-160 (289)
161 KOG2380 Prephenate dehydrogena 94.1 0.057 1.2E-06 46.7 3.6 35 152-186 51-85 (480)
162 PRK03806 murD UDP-N-acetylmura 94.1 0.083 1.8E-06 47.2 4.8 36 151-186 4-39 (438)
163 PF02558 ApbA: Ketopantoate re 94.0 0.061 1.3E-06 40.5 3.4 31 156-186 1-31 (151)
164 PF01210 NAD_Gly3P_dh_N: NAD-d 94.0 0.066 1.4E-06 41.1 3.5 32 155-186 1-32 (157)
165 PRK13940 glutamyl-tRNA reducta 93.9 0.077 1.7E-06 47.3 4.3 38 149-186 177-215 (414)
166 PRK06197 short chain dehydroge 93.9 0.069 1.5E-06 45.1 3.9 47 140-186 3-50 (306)
167 PRK00066 ldh L-lactate dehydro 93.8 0.095 2.1E-06 45.0 4.5 36 151-186 4-41 (315)
168 PRK08644 thiamine biosynthesis 93.7 0.06 1.3E-06 43.6 3.1 43 143-185 18-61 (212)
169 KOG0022 Alcohol dehydrogenase, 93.7 0.079 1.7E-06 45.4 3.7 38 150-187 190-228 (375)
170 PRK08217 fabG 3-ketoacyl-(acyl 93.6 0.098 2.1E-06 42.3 4.2 36 151-186 3-39 (253)
171 PF02254 TrkA_N: TrkA-N domain 93.6 0.089 1.9E-06 37.7 3.5 31 156-186 1-31 (116)
172 smart00846 Gp_dh_N Glyceraldeh 93.6 0.11 2.3E-06 39.8 4.0 30 155-184 2-32 (149)
173 TIGR01809 Shik-DH-AROM shikima 93.5 0.099 2.1E-06 44.1 4.1 37 150-186 122-159 (282)
174 PRK06153 hypothetical protein; 93.5 0.076 1.7E-06 46.8 3.5 37 149-185 172-209 (393)
175 PRK14982 acyl-ACP reductase; P 93.5 0.12 2.6E-06 44.9 4.6 39 148-186 150-191 (340)
176 COG0027 PurT Formate-dependent 93.4 0.1 2.2E-06 44.6 4.0 38 152-189 11-48 (394)
177 PRK14176 bifunctional 5,10-met 93.4 0.11 2.3E-06 44.1 4.0 53 148-200 159-214 (287)
178 PRK12828 short chain dehydroge 93.4 0.099 2.1E-06 41.8 3.7 38 150-187 4-42 (239)
179 PRK08703 short chain dehydroge 93.3 0.12 2.5E-06 41.8 4.2 38 149-186 2-40 (239)
180 COG0677 WecC UDP-N-acetyl-D-ma 93.3 0.067 1.4E-06 47.1 2.7 33 154-186 10-42 (436)
181 PRK07523 gluconate 5-dehydroge 93.3 0.12 2.6E-06 42.1 4.2 37 150-186 7-44 (255)
182 TIGR01381 E1_like_apg7 E1-like 93.2 0.13 2.8E-06 48.2 4.7 60 113-185 308-371 (664)
183 PRK12771 putative glutamate sy 93.2 0.2 4.2E-06 46.4 5.9 46 141-186 125-170 (564)
184 PTZ00245 ubiquitin activating 93.1 0.11 2.4E-06 43.3 3.6 51 133-185 8-59 (287)
185 PRK09496 trkA potassium transp 93.1 0.11 2.3E-06 46.4 3.9 38 150-187 228-265 (453)
186 PRK06841 short chain dehydroge 93.0 0.12 2.7E-06 42.0 3.8 38 150-187 12-50 (255)
187 TIGR03366 HpnZ_proposed putati 93.0 0.47 1E-05 39.5 7.4 35 152-186 120-155 (280)
188 PF02882 THF_DHG_CYH_C: Tetrah 92.9 0.19 4E-06 39.0 4.5 54 148-201 31-87 (160)
189 PRK05786 fabG 3-ketoacyl-(acyl 92.9 0.15 3.2E-06 41.0 4.1 38 150-187 2-40 (238)
190 PRK06523 short chain dehydroge 92.8 0.15 3.3E-06 41.6 4.2 39 149-187 5-44 (260)
191 PLN02520 bifunctional 3-dehydr 92.8 0.15 3.2E-06 47.0 4.4 37 150-186 376-412 (529)
192 PRK06398 aldose dehydrogenase; 92.7 0.17 3.6E-06 41.6 4.3 38 150-187 3-41 (258)
193 PRK07231 fabG 3-ketoacyl-(acyl 92.7 0.15 3.2E-06 41.2 3.9 38 150-187 2-40 (251)
194 COG0373 HemA Glutamyl-tRNA red 92.7 0.17 3.6E-06 45.1 4.4 39 149-187 174-213 (414)
195 PF00056 Ldh_1_N: lactate/mala 92.6 0.19 4E-06 38.0 4.1 33 154-186 1-36 (141)
196 cd00755 YgdL_like Family of ac 92.6 0.15 3.1E-06 42.0 3.7 38 148-185 6-44 (231)
197 PTZ00117 malate dehydrogenase; 92.6 0.18 3.8E-06 43.4 4.3 36 151-186 3-39 (319)
198 TIGR01832 kduD 2-deoxy-D-gluco 92.5 0.18 3.9E-06 40.8 4.2 37 150-186 2-39 (248)
199 PRK07634 pyrroline-5-carboxyla 92.5 0.16 3.5E-06 41.5 3.9 34 152-185 3-40 (245)
200 cd05312 NAD_bind_1_malic_enz N 92.5 0.37 7.9E-06 40.7 6.0 55 116-186 4-69 (279)
201 PF13738 Pyr_redox_3: Pyridine 92.4 0.28 6E-06 38.5 5.1 39 149-187 163-201 (203)
202 cd05212 NAD_bind_m-THF_DH_Cycl 92.4 0.39 8.4E-06 36.4 5.5 57 148-204 23-82 (140)
203 PRK06057 short chain dehydroge 92.3 0.19 4.1E-06 41.1 4.1 38 150-187 4-42 (255)
204 PRK08223 hypothetical protein; 92.3 0.15 3.3E-06 43.2 3.5 39 147-185 21-60 (287)
205 PRK06949 short chain dehydroge 92.3 0.23 5E-06 40.4 4.6 38 149-186 5-43 (258)
206 PRK15116 sulfur acceptor prote 92.3 0.1 2.2E-06 43.8 2.4 43 143-185 20-63 (268)
207 COG1249 Lpd Pyruvate/2-oxoglut 92.2 0.14 3E-06 46.2 3.5 35 153-187 173-207 (454)
208 PLN02780 ketoreductase/ oxidor 92.1 0.57 1.2E-05 40.1 7.0 36 151-186 51-87 (320)
209 PRK12826 3-ketoacyl-(acyl-carr 92.1 0.21 4.5E-06 40.3 4.1 38 149-186 2-40 (251)
210 PRK08264 short chain dehydroge 92.1 0.18 4E-06 40.5 3.7 38 150-187 3-42 (238)
211 PRK05717 oxidoreductase; Valid 92.0 0.23 5E-06 40.5 4.3 38 149-186 6-44 (255)
212 cd08230 glucose_DH Glucose deh 92.0 0.19 4.1E-06 43.4 3.9 35 151-185 171-205 (355)
213 PRK07576 short chain dehydroge 91.9 0.23 5E-06 40.9 4.2 38 149-186 5-43 (264)
214 PRK08993 2-deoxy-D-gluconate 3 91.9 0.24 5.3E-06 40.4 4.3 37 150-186 7-44 (253)
215 PRK14178 bifunctional 5,10-met 91.9 0.19 4.1E-06 42.4 3.6 55 148-202 147-204 (279)
216 PTZ00082 L-lactate dehydrogena 91.9 0.25 5.3E-06 42.6 4.4 37 151-187 4-41 (321)
217 PRK07890 short chain dehydroge 91.8 0.21 4.5E-06 40.6 3.8 36 151-186 3-39 (258)
218 PRK08265 short chain dehydroge 91.8 0.25 5.5E-06 40.6 4.3 38 150-187 3-41 (261)
219 COG0540 PyrB Aspartate carbamo 91.8 0.86 1.9E-05 38.9 7.4 94 68-185 95-193 (316)
220 PRK06172 short chain dehydroge 91.7 0.25 5.4E-06 40.2 4.1 38 150-187 4-42 (253)
221 PRK08862 short chain dehydroge 91.7 0.25 5.4E-06 40.0 4.1 38 150-187 2-40 (227)
222 PRK09880 L-idonate 5-dehydroge 91.7 0.19 4.2E-06 43.1 3.6 35 152-186 169-204 (343)
223 PRK07060 short chain dehydroge 91.7 0.26 5.7E-06 39.7 4.2 37 150-186 6-43 (245)
224 TIGR03325 BphB_TodD cis-2,3-di 91.6 0.26 5.5E-06 40.5 4.2 36 151-186 3-39 (262)
225 PRK06550 fabG 3-ketoacyl-(acyl 91.6 0.26 5.7E-06 39.5 4.2 38 150-187 2-40 (235)
226 PRK09186 flagellin modificatio 91.6 0.21 4.6E-06 40.5 3.6 37 151-187 2-39 (256)
227 PLN00141 Tic62-NAD(P)-related 91.6 0.25 5.3E-06 40.5 4.0 39 148-186 12-51 (251)
228 TIGR01202 bchC 2-desacetyl-2-h 91.6 0.22 4.7E-06 42.2 3.8 34 152-185 144-178 (308)
229 PRK08339 short chain dehydroge 91.6 0.26 5.7E-06 40.6 4.2 37 150-186 5-42 (263)
230 PRK07831 short chain dehydroge 91.5 0.25 5.5E-06 40.5 4.0 38 149-186 13-52 (262)
231 TIGR03201 dearomat_had 6-hydro 91.5 0.22 4.7E-06 42.9 3.8 35 152-186 166-200 (349)
232 PRK08945 putative oxoacyl-(acy 91.5 0.25 5.4E-06 40.1 3.9 38 149-186 8-46 (247)
233 PRK08628 short chain dehydroge 91.5 0.24 5.3E-06 40.3 3.9 39 149-187 3-42 (258)
234 PRK07806 short chain dehydroge 91.4 0.28 6E-06 39.7 4.1 37 150-186 3-40 (248)
235 COG1648 CysG Siroheme synthase 91.4 0.32 7E-06 39.3 4.4 40 148-187 7-46 (210)
236 PRK05562 precorrin-2 dehydroge 91.4 0.27 6E-06 40.1 4.0 42 148-189 20-61 (223)
237 COG2072 TrkA Predicted flavopr 91.4 0.24 5.3E-06 44.5 4.1 46 140-187 164-209 (443)
238 PRK06125 short chain dehydroge 91.4 0.28 6.1E-06 40.1 4.2 37 150-186 4-41 (259)
239 TIGR02822 adh_fam_2 zinc-bindi 91.4 0.24 5.1E-06 42.5 3.8 35 152-186 165-199 (329)
240 PLN02740 Alcohol dehydrogenase 91.3 0.25 5.4E-06 43.2 4.0 36 151-186 197-233 (381)
241 cd01491 Ube1_repeat1 Ubiquitin 91.3 0.16 3.5E-06 43.0 2.6 44 143-186 9-53 (286)
242 PRK06114 short chain dehydroge 91.3 0.31 6.7E-06 39.8 4.2 38 150-187 5-43 (254)
243 PRK07062 short chain dehydroge 91.2 0.28 6.1E-06 40.2 3.9 38 149-186 4-42 (265)
244 PRK08085 gluconate 5-dehydroge 91.2 0.32 6.9E-06 39.6 4.2 37 150-186 6-43 (254)
245 PRK07856 short chain dehydroge 91.1 0.27 5.9E-06 40.0 3.8 37 150-186 3-40 (252)
246 PLN02358 glyceraldehyde-3-phos 91.1 0.29 6.3E-06 42.5 4.1 33 154-186 6-40 (338)
247 PRK06138 short chain dehydroge 91.1 0.32 6.8E-06 39.4 4.1 37 150-186 2-39 (252)
248 PRK07326 short chain dehydroge 91.1 0.28 6.1E-06 39.3 3.8 36 151-186 4-40 (237)
249 PRK06505 enoyl-(acyl carrier p 91.1 0.31 6.7E-06 40.5 4.1 35 151-185 5-42 (271)
250 PRK06079 enoyl-(acyl carrier p 91.0 0.31 6.7E-06 39.9 4.1 36 150-185 4-42 (252)
251 TIGR02818 adh_III_F_hyde S-(hy 91.0 0.3 6.4E-06 42.5 4.1 36 151-186 184-220 (368)
252 PLN02586 probable cinnamyl alc 91.0 0.3 6.5E-06 42.4 4.2 35 152-186 183-217 (360)
253 PRK06124 gluconate 5-dehydroge 91.0 0.32 6.9E-06 39.6 4.1 37 150-186 8-45 (256)
254 PF03949 Malic_M: Malic enzyme 91.0 0.5 1.1E-05 39.3 5.2 55 116-186 4-69 (255)
255 PRK05867 short chain dehydroge 91.0 0.33 7.2E-06 39.5 4.2 37 150-186 6-43 (253)
256 PRK12429 3-hydroxybutyrate deh 91.0 0.24 5.3E-06 40.1 3.4 37 151-187 2-39 (258)
257 TIGR03736 PRTRC_ThiF PRTRC sys 91.0 0.32 6.9E-06 40.3 4.1 34 152-185 10-54 (244)
258 PRK09072 short chain dehydroge 91.0 0.33 7.2E-06 39.8 4.2 36 151-186 3-39 (263)
259 PRK07774 short chain dehydroge 91.0 0.33 7.2E-06 39.2 4.2 37 150-186 3-40 (250)
260 PF01118 Semialdhyde_dh: Semia 91.0 0.3 6.4E-06 35.7 3.5 32 155-186 1-35 (121)
261 cd00762 NAD_bind_malic_enz NAD 91.0 0.48 1E-05 39.4 5.1 55 116-186 4-69 (254)
262 PRK06935 2-deoxy-D-gluconate 3 91.0 0.33 7.2E-06 39.6 4.2 37 149-185 11-48 (258)
263 cd08239 THR_DH_like L-threonin 90.9 0.28 6E-06 41.8 3.8 35 152-186 163-198 (339)
264 TIGR02622 CDP_4_6_dhtase CDP-g 90.9 0.35 7.5E-06 41.6 4.4 37 151-187 2-39 (349)
265 PTZ00434 cytosolic glyceraldeh 90.9 0.26 5.6E-06 43.0 3.5 31 154-184 4-39 (361)
266 cd08301 alcohol_DH_plants Plan 90.9 0.29 6.4E-06 42.4 3.9 36 151-186 186-222 (369)
267 PRK12829 short chain dehydroge 90.8 0.29 6.2E-06 39.9 3.7 38 149-186 7-45 (264)
268 cd05188 MDR Medium chain reduc 90.8 0.35 7.5E-06 39.1 4.1 36 151-186 133-168 (271)
269 PRK07533 enoyl-(acyl carrier p 90.8 0.34 7.3E-06 39.8 4.1 38 149-186 6-46 (258)
270 PRK12859 3-ketoacyl-(acyl-carr 90.8 0.34 7.3E-06 39.7 4.0 35 150-184 3-40 (256)
271 PRK14191 bifunctional 5,10-met 90.8 0.36 7.8E-06 40.9 4.2 54 148-201 152-208 (285)
272 PF01113 DapB_N: Dihydrodipico 90.8 0.27 5.8E-06 36.2 3.1 32 155-186 2-36 (124)
273 PRK12748 3-ketoacyl-(acyl-carr 90.8 0.32 7E-06 39.6 3.9 36 150-185 2-40 (256)
274 PRK07814 short chain dehydroge 90.7 0.36 7.8E-06 39.7 4.2 38 150-187 7-45 (263)
275 PRK08594 enoyl-(acyl carrier p 90.7 0.38 8.2E-06 39.6 4.3 36 150-185 4-42 (257)
276 PRK06500 short chain dehydroge 90.7 0.37 7.9E-06 38.9 4.2 37 150-186 3-40 (249)
277 PF01408 GFO_IDH_MocA: Oxidore 90.6 0.3 6.5E-06 35.0 3.2 32 155-186 2-36 (120)
278 PLN02178 cinnamyl-alcohol dehy 90.6 0.3 6.4E-06 42.8 3.7 35 152-186 178-212 (375)
279 PRK08213 gluconate 5-dehydroge 90.6 0.38 8.3E-06 39.2 4.2 38 149-186 8-46 (259)
280 PRK07825 short chain dehydroge 90.6 0.37 8.1E-06 39.7 4.2 37 150-186 2-39 (273)
281 PRK12862 malic enzyme; Reviewe 90.6 1 2.2E-05 43.3 7.5 66 99-186 161-229 (763)
282 PRK08415 enoyl-(acyl carrier p 90.5 0.36 7.8E-06 40.3 4.1 36 151-186 3-41 (274)
283 PRK03562 glutathione-regulated 90.5 0.25 5.3E-06 46.4 3.3 35 153-187 400-434 (621)
284 PLN02253 xanthoxin dehydrogena 90.5 0.38 8.2E-06 39.8 4.2 38 149-186 14-52 (280)
285 PRK06198 short chain dehydroge 90.5 0.34 7.4E-06 39.5 3.8 38 149-186 2-41 (260)
286 PRK14851 hypothetical protein; 90.5 0.22 4.8E-06 47.2 3.0 42 143-184 33-75 (679)
287 PRK05653 fabG 3-ketoacyl-(acyl 90.5 0.33 7.2E-06 38.8 3.7 38 150-187 2-40 (246)
288 PRK08278 short chain dehydroge 90.5 0.41 8.9E-06 39.7 4.4 38 150-187 3-41 (273)
289 PLN02662 cinnamyl-alcohol dehy 90.5 0.35 7.7E-06 40.8 4.0 35 152-186 3-38 (322)
290 TIGR03206 benzo_BadH 2-hydroxy 90.5 0.4 8.8E-06 38.7 4.2 36 151-186 1-37 (250)
291 PRK12823 benD 1,6-dihydroxycyc 90.5 0.38 8.3E-06 39.2 4.1 37 150-186 5-42 (260)
292 PRK06200 2,3-dihydroxy-2,3-dih 90.4 0.39 8.5E-06 39.3 4.2 36 151-186 4-40 (263)
293 PRK05876 short chain dehydroge 90.4 0.39 8.5E-06 39.9 4.2 38 149-186 2-40 (275)
294 PRK05866 short chain dehydroge 90.4 0.4 8.7E-06 40.4 4.3 40 147-186 34-74 (293)
295 COG0281 SfcA Malic enzyme [Ene 90.4 0.8 1.7E-05 40.7 6.2 67 98-186 166-235 (432)
296 PRK12939 short chain dehydroge 90.4 0.44 9.6E-06 38.4 4.4 38 150-187 4-42 (250)
297 PRK12861 malic enzyme; Reviewe 90.4 0.92 2E-05 43.5 7.0 66 99-186 157-225 (764)
298 cd01493 APPBP1_RUB Ubiquitin a 90.3 0.19 4.1E-06 45.0 2.3 43 143-185 10-53 (425)
299 PRK12481 2-deoxy-D-gluconate 3 90.3 0.4 8.7E-06 39.2 4.1 37 150-186 5-42 (251)
300 PRK07889 enoyl-(acyl carrier p 90.3 0.39 8.3E-06 39.5 4.0 37 150-186 4-43 (256)
301 PRK14852 hypothetical protein; 90.3 0.33 7.1E-06 47.6 3.9 42 143-184 322-364 (989)
302 PRK06171 sorbitol-6-phosphate 90.2 0.47 1E-05 38.9 4.4 38 150-187 6-44 (266)
303 PRK06141 ornithine cyclodeamin 90.2 0.37 8E-06 41.3 3.9 36 151-186 123-160 (314)
304 PRK06194 hypothetical protein; 90.2 0.41 8.8E-06 39.7 4.1 37 150-186 3-40 (287)
305 PRK09288 purT phosphoribosylgl 90.2 0.44 9.6E-06 41.7 4.5 37 152-188 11-47 (395)
306 PRK08589 short chain dehydroge 90.2 0.42 9.1E-06 39.5 4.2 36 150-185 3-39 (272)
307 TIGR03451 mycoS_dep_FDH mycoth 90.2 0.3 6.5E-06 42.2 3.4 35 152-186 176-211 (358)
308 TIGR02441 fa_ox_alpha_mit fatt 90.2 0.32 6.9E-06 46.6 3.8 33 154-186 336-368 (737)
309 PLN03096 glyceraldehyde-3-phos 90.1 0.34 7.3E-06 42.9 3.6 31 154-184 61-94 (395)
310 PRK08289 glyceraldehyde-3-phos 90.1 0.33 7.2E-06 43.8 3.6 33 151-183 125-162 (477)
311 PRK07478 short chain dehydroge 90.1 0.36 7.8E-06 39.3 3.7 38 150-187 3-41 (254)
312 PRK09242 tropinone reductase; 90.1 0.43 9.4E-06 38.9 4.1 37 150-186 6-43 (257)
313 PRK07035 short chain dehydroge 90.1 0.44 9.6E-06 38.6 4.2 37 150-186 5-42 (252)
314 TIGR01408 Ube1 ubiquitin-activ 90.1 0.24 5.1E-06 49.0 2.9 43 143-185 409-457 (1008)
315 cd08300 alcohol_DH_class_III c 90.1 0.4 8.7E-06 41.6 4.1 35 152-186 186-221 (368)
316 COG1250 FadB 3-hydroxyacyl-CoA 90.1 0.36 7.8E-06 41.3 3.7 34 153-186 3-36 (307)
317 PRK07063 short chain dehydroge 90.0 0.45 9.7E-06 38.9 4.2 37 150-186 4-41 (260)
318 PRK06603 enoyl-(acyl carrier p 90.0 0.46 1E-05 39.1 4.2 37 149-185 4-43 (260)
319 PRK11730 fadB multifunctional 90.0 0.34 7.4E-06 46.3 3.8 33 154-186 314-346 (715)
320 PRK07232 bifunctional malic en 90.0 1.2 2.5E-05 42.8 7.3 66 99-186 153-221 (752)
321 cd08245 CAD Cinnamyl alcohol d 89.9 0.44 9.6E-06 40.3 4.2 36 151-186 161-196 (330)
322 cd05212 NAD_bind_m-THF_DH_Cycl 89.9 6.9 0.00015 29.5 10.2 94 10-108 26-122 (140)
323 PRK12367 short chain dehydroge 89.9 0.47 1E-05 39.0 4.2 38 149-186 10-48 (245)
324 PRK12749 quinate/shikimate deh 89.9 0.49 1.1E-05 40.1 4.3 38 149-186 120-158 (288)
325 PRK05565 fabG 3-ketoacyl-(acyl 89.8 0.46 1E-05 38.1 4.0 37 150-186 2-40 (247)
326 TIGR02437 FadB fatty oxidation 89.8 0.36 7.8E-06 46.1 3.9 33 154-186 314-346 (714)
327 PRK07577 short chain dehydroge 89.8 0.53 1.2E-05 37.6 4.4 37 152-188 2-39 (234)
328 PRK05875 short chain dehydroge 89.8 0.46 9.9E-06 39.2 4.1 36 151-186 5-41 (276)
329 PRK08277 D-mannonate oxidoredu 89.8 0.47 1E-05 39.2 4.1 38 149-186 6-44 (278)
330 PRK13529 malate dehydrogenase; 89.8 2.3 4.9E-05 39.4 8.7 90 74-186 238-339 (563)
331 PLN02240 UDP-glucose 4-epimera 89.7 0.52 1.1E-05 40.3 4.5 36 150-185 2-38 (352)
332 cd08277 liver_alcohol_DH_like 89.7 0.43 9.3E-06 41.4 4.0 36 151-186 183-219 (365)
333 PRK06196 oxidoreductase; Provi 89.7 0.47 1E-05 40.2 4.2 38 149-186 22-60 (315)
334 PRK14027 quinate/shikimate deh 89.7 0.5 1.1E-05 40.0 4.2 37 150-186 124-161 (283)
335 PRK07067 sorbitol dehydrogenas 89.7 0.49 1.1E-05 38.6 4.1 37 151-187 4-41 (257)
336 PLN02896 cinnamyl-alcohol dehy 89.7 0.49 1.1E-05 40.7 4.3 39 148-186 5-44 (353)
337 PRK12742 oxidoreductase; Provi 89.6 0.53 1.1E-05 37.7 4.3 35 150-184 3-38 (237)
338 PRK07984 enoyl-(acyl carrier p 89.6 0.48 1E-05 39.3 4.0 35 151-185 4-41 (262)
339 PRK05872 short chain dehydroge 89.5 0.53 1.1E-05 39.6 4.3 39 149-187 5-44 (296)
340 PRK08226 short chain dehydroge 89.5 0.52 1.1E-05 38.5 4.2 37 150-186 3-40 (263)
341 cd08281 liver_ADH_like1 Zinc-d 89.5 0.41 8.8E-06 41.6 3.7 35 152-186 191-226 (371)
342 PRK05993 short chain dehydroge 89.5 0.49 1.1E-05 39.3 4.0 35 153-187 4-39 (277)
343 cd08242 MDR_like Medium chain 89.5 0.5 1.1E-05 39.8 4.1 35 151-185 154-188 (319)
344 cd08296 CAD_like Cinnamyl alco 89.4 0.49 1.1E-05 40.3 4.1 35 152-186 163-197 (333)
345 PLN03154 putative allyl alcoho 89.4 0.5 1.1E-05 40.8 4.2 36 151-186 157-193 (348)
346 PRK08690 enoyl-(acyl carrier p 89.4 0.55 1.2E-05 38.7 4.2 36 150-185 3-41 (261)
347 PRK03659 glutathione-regulated 89.4 0.28 6E-06 45.9 2.7 35 153-187 400-434 (601)
348 PRK08416 7-alpha-hydroxysteroi 89.3 0.54 1.2E-05 38.5 4.2 37 149-185 4-41 (260)
349 PRK04663 murD UDP-N-acetylmura 89.3 0.61 1.3E-05 41.7 4.7 36 151-186 4-42 (438)
350 TIGR02440 FadJ fatty oxidation 89.2 0.43 9.3E-06 45.5 3.9 33 154-186 305-338 (699)
351 PRK13394 3-hydroxybutyrate deh 89.2 0.52 1.1E-05 38.3 4.0 37 150-186 4-41 (262)
352 PRK08159 enoyl-(acyl carrier p 89.2 0.53 1.1E-05 39.1 4.0 37 149-185 6-45 (272)
353 PLN02237 glyceraldehyde-3-phos 89.2 0.43 9.3E-06 42.8 3.6 32 154-185 76-110 (442)
354 PRK10669 putative cation:proto 89.2 0.31 6.8E-06 45.0 2.9 34 154-187 418-451 (558)
355 PRK06720 hypothetical protein; 89.1 0.63 1.4E-05 36.2 4.1 37 150-186 13-50 (169)
356 PRK06997 enoyl-(acyl carrier p 89.1 0.53 1.1E-05 38.8 3.9 35 150-184 3-40 (260)
357 PRK05854 short chain dehydroge 89.0 0.59 1.3E-05 39.7 4.3 39 148-186 9-48 (313)
358 PRK08303 short chain dehydroge 89.0 0.63 1.4E-05 39.5 4.4 38 149-186 4-42 (305)
359 cd08295 double_bond_reductase_ 89.0 0.56 1.2E-05 40.0 4.1 36 151-186 150-186 (338)
360 cd05283 CAD1 Cinnamyl alcohol 88.9 0.57 1.2E-05 40.0 4.1 36 151-186 168-203 (337)
361 COG0190 FolD 5,10-methylene-te 88.8 1.3 2.8E-05 37.4 6.0 53 148-200 151-206 (283)
362 cd08255 2-desacetyl-2-hydroxye 88.8 0.54 1.2E-05 38.7 3.8 35 151-185 96-131 (277)
363 PRK06139 short chain dehydroge 88.8 0.57 1.2E-05 40.3 4.0 38 149-186 3-41 (330)
364 PRK08936 glucose-1-dehydrogena 88.8 0.66 1.4E-05 37.9 4.3 38 149-186 3-41 (261)
365 PRK11154 fadJ multifunctional 88.7 0.46 1E-05 45.3 3.7 33 154-186 310-343 (708)
366 PRK12809 putative oxidoreducta 88.7 1.3 2.7E-05 41.8 6.6 37 151-187 308-344 (639)
367 PRK12439 NAD(P)H-dependent gly 88.7 0.46 1E-05 41.2 3.4 31 154-185 8-38 (341)
368 KOG1687 NADH-ubiquinone oxidor 88.6 1.8 3.9E-05 32.5 5.9 79 54-137 70-162 (168)
369 PTZ00325 malate dehydrogenase; 88.6 0.77 1.7E-05 39.6 4.7 36 149-184 4-42 (321)
370 PRK06182 short chain dehydroge 88.5 0.67 1.5E-05 38.2 4.2 35 152-186 2-37 (273)
371 cd05293 LDH_1 A subgroup of L- 88.4 0.74 1.6E-05 39.5 4.5 34 153-186 3-38 (312)
372 PLN02653 GDP-mannose 4,6-dehyd 88.4 0.63 1.4E-05 39.8 4.1 37 150-186 3-40 (340)
373 PRK12769 putative oxidoreducta 88.4 0.66 1.4E-05 43.7 4.5 37 151-187 325-361 (654)
374 PRK07097 gluconate 5-dehydroge 88.3 0.7 1.5E-05 37.9 4.2 37 150-186 7-44 (265)
375 PRK15181 Vi polysaccharide bio 88.3 0.7 1.5E-05 39.8 4.3 37 150-186 12-49 (348)
376 PRK09135 pteridine reductase; 88.3 0.72 1.6E-05 37.0 4.2 36 151-186 4-40 (249)
377 PLN02514 cinnamyl-alcohol dehy 88.3 0.65 1.4E-05 40.2 4.1 36 151-186 179-214 (357)
378 PRK07985 oxidoreductase; Provi 88.3 0.7 1.5E-05 38.9 4.2 37 150-186 46-83 (294)
379 PLN02695 GDP-D-mannose-3',5'-e 88.3 0.64 1.4E-05 40.6 4.1 35 152-186 20-55 (370)
380 PRK07370 enoyl-(acyl carrier p 88.2 0.74 1.6E-05 37.8 4.2 35 150-184 3-40 (258)
381 COG5322 Predicted dehydrogenas 88.2 1.6 3.5E-05 36.8 6.1 50 126-184 149-199 (351)
382 PRK08324 short chain dehydroge 88.2 0.66 1.4E-05 44.0 4.4 40 148-187 417-457 (681)
383 PRK14573 bifunctional D-alanyl 88.1 0.65 1.4E-05 45.0 4.4 33 154-186 5-38 (809)
384 PRK07666 fabG 3-ketoacyl-(acyl 88.1 0.84 1.8E-05 36.7 4.5 37 150-186 4-41 (239)
385 PRK06113 7-alpha-hydroxysteroi 88.1 0.72 1.6E-05 37.6 4.1 37 150-186 8-45 (255)
386 cd08269 Zn_ADH9 Alcohol dehydr 88.1 0.66 1.4E-05 38.6 3.9 36 151-186 128-164 (312)
387 TIGR01316 gltA glutamate synth 88.0 1.2 2.6E-05 40.0 5.8 37 150-186 269-305 (449)
388 cd08231 MDR_TM0436_like Hypoth 88.0 0.68 1.5E-05 39.8 4.1 35 152-186 177-212 (361)
389 PRK06180 short chain dehydroge 88.0 0.66 1.4E-05 38.4 3.9 35 152-186 3-38 (277)
390 PRK07251 pyridine nucleotide-d 88.0 0.67 1.4E-05 41.3 4.1 34 153-186 157-190 (438)
391 PRK06914 short chain dehydroge 88.0 0.65 1.4E-05 38.4 3.8 36 152-187 2-38 (280)
392 PRK06701 short chain dehydroge 87.9 0.76 1.6E-05 38.6 4.2 38 149-186 42-80 (290)
393 cd08234 threonine_DH_like L-th 87.9 0.67 1.5E-05 39.2 3.9 36 151-186 158-194 (334)
394 COG1063 Tdh Threonine dehydrog 87.9 0.7 1.5E-05 40.2 4.0 35 153-187 169-204 (350)
395 PRK07904 short chain dehydroge 87.7 0.82 1.8E-05 37.5 4.2 37 152-188 7-45 (253)
396 PLN03209 translocon at the inn 87.7 0.71 1.5E-05 42.9 4.1 38 149-186 76-114 (576)
397 PRK07877 hypothetical protein; 87.7 0.46 1E-05 45.3 3.0 42 143-185 97-140 (722)
398 PRK10637 cysG siroheme synthas 87.7 0.69 1.5E-05 41.8 4.0 42 148-189 7-48 (457)
399 PRK07424 bifunctional sterol d 87.6 0.83 1.8E-05 40.7 4.4 39 148-186 173-212 (406)
400 PRK04523 N-acetylornithine car 87.6 4.5 9.8E-05 35.1 8.8 93 68-184 99-207 (335)
401 PRK08220 2,3-dihydroxybenzoate 87.6 0.81 1.8E-05 37.0 4.1 37 150-186 5-42 (252)
402 KOG2304 3-hydroxyacyl-CoA dehy 87.6 0.44 9.5E-06 39.1 2.4 36 151-186 9-44 (298)
403 PRK10309 galactitol-1-phosphat 87.5 0.7 1.5E-05 39.6 3.8 35 152-186 160-195 (347)
404 PRK06179 short chain dehydroge 87.5 0.75 1.6E-05 37.7 3.9 35 152-186 3-38 (270)
405 COG0169 AroE Shikimate 5-dehyd 87.5 0.88 1.9E-05 38.5 4.3 38 149-186 122-160 (283)
406 TIGR02825 B4_12hDH leukotriene 87.5 0.79 1.7E-05 38.8 4.1 35 152-186 138-173 (325)
407 KOG0024 Sorbitol dehydrogenase 87.4 0.72 1.6E-05 39.7 3.7 36 151-186 168-204 (354)
408 PRK08642 fabG 3-ketoacyl-(acyl 87.3 0.91 2E-05 36.6 4.2 34 151-184 3-37 (253)
409 PRK12831 putative oxidoreducta 87.3 0.8 1.7E-05 41.4 4.2 36 151-186 279-314 (464)
410 PRK12936 3-ketoacyl-(acyl-carr 87.2 0.95 2.1E-05 36.3 4.2 37 150-186 3-40 (245)
411 PLN02827 Alcohol dehydrogenase 87.1 0.83 1.8E-05 39.9 4.1 36 151-186 192-228 (378)
412 PRK12827 short chain dehydroge 87.1 0.99 2.2E-05 36.2 4.3 36 150-185 3-39 (249)
413 PRK07454 short chain dehydroge 87.1 0.9 2E-05 36.5 4.1 36 152-187 5-41 (241)
414 cd08289 MDR_yhfp_like Yhfp put 87.0 0.82 1.8E-05 38.4 3.9 35 152-186 146-181 (326)
415 COG1086 Predicted nucleoside-d 86.9 4 8.7E-05 37.8 8.4 163 9-186 113-285 (588)
416 cd08288 MDR_yhdh Yhdh putative 86.9 0.82 1.8E-05 38.4 3.9 35 152-186 146-181 (324)
417 TIGR01318 gltD_gamma_fam gluta 86.9 0.91 2E-05 41.1 4.3 37 151-187 139-175 (467)
418 PRK06463 fabG 3-ketoacyl-(acyl 86.9 0.95 2.1E-05 36.8 4.1 36 150-185 4-40 (255)
419 TIGR03316 ygeW probable carbam 86.9 6.5 0.00014 34.5 9.4 37 150-186 167-211 (357)
420 PLN02989 cinnamyl-alcohol dehy 86.9 0.92 2E-05 38.4 4.2 35 152-186 4-39 (325)
421 cd08260 Zn_ADH6 Alcohol dehydr 86.9 0.89 1.9E-05 38.7 4.1 35 152-186 165-199 (345)
422 PRK07340 ornithine cyclodeamin 86.8 0.98 2.1E-05 38.6 4.3 36 151-186 123-160 (304)
423 PRK07453 protochlorophyllide o 86.8 0.99 2.2E-05 38.3 4.3 37 150-186 3-40 (322)
424 TIGR01408 Ube1 ubiquitin-activ 86.7 0.58 1.3E-05 46.3 3.2 43 143-185 14-57 (1008)
425 PRK12744 short chain dehydroge 86.7 1.1 2.3E-05 36.6 4.3 36 150-185 5-41 (257)
426 PRK12935 acetoacetyl-CoA reduc 86.7 0.92 2E-05 36.6 3.9 35 150-184 3-38 (247)
427 TIGR02632 RhaD_aldol-ADH rhamn 86.7 1.2 2.7E-05 42.2 5.3 40 147-186 408-448 (676)
428 PRK07109 short chain dehydroge 86.7 1 2.2E-05 38.8 4.3 38 149-186 4-42 (334)
429 PLN02214 cinnamoyl-CoA reducta 86.6 0.98 2.1E-05 38.9 4.2 38 150-187 7-45 (342)
430 cd08293 PTGR2 Prostaglandin re 86.6 0.93 2E-05 38.6 4.1 34 153-186 155-190 (345)
431 COG1004 Ugd Predicted UDP-gluc 86.6 0.95 2.1E-05 40.0 4.1 37 151-187 308-354 (414)
432 PLN03129 NADP-dependent malic 86.6 2.3 4.9E-05 39.5 6.7 68 97-186 287-366 (581)
433 PRK06327 dihydrolipoamide dehy 86.5 0.92 2E-05 41.0 4.2 34 153-186 183-216 (475)
434 PLN02730 enoyl-[acyl-carrier-p 86.5 0.99 2.1E-05 38.5 4.1 33 149-181 5-40 (303)
435 PRK12810 gltD glutamate syntha 86.5 2.2 4.8E-05 38.5 6.6 38 150-187 140-177 (471)
436 PLN02427 UDP-apiose/xylose syn 86.5 1 2.2E-05 39.3 4.3 39 148-186 9-49 (386)
437 PRK08261 fabG 3-ketoacyl-(acyl 86.4 1.3 2.8E-05 39.5 5.1 38 149-186 206-244 (450)
438 cd08237 ribitol-5-phosphate_DH 86.4 0.71 1.5E-05 39.7 3.3 36 152-187 163-200 (341)
439 PLN02657 3,8-divinyl protochlo 86.4 0.96 2.1E-05 39.9 4.1 39 148-186 55-94 (390)
440 PRK05557 fabG 3-ketoacyl-(acyl 86.3 1 2.2E-05 36.0 4.0 37 151-187 3-40 (248)
441 PRK12831 putative oxidoreducta 86.3 2.5 5.4E-05 38.2 6.8 38 149-186 136-173 (464)
442 TIGR03589 PseB UDP-N-acetylglu 86.2 0.98 2.1E-05 38.6 4.0 36 151-186 2-40 (324)
443 PLN00106 malate dehydrogenase 86.2 1.2 2.7E-05 38.4 4.6 35 152-186 17-54 (323)
444 cd08294 leukotriene_B4_DH_like 86.2 1 2.2E-05 37.9 4.1 35 152-186 143-178 (329)
445 PRK12814 putative NADPH-depend 86.0 1 2.2E-05 42.6 4.3 37 151-187 191-227 (652)
446 PRK07792 fabG 3-ketoacyl-(acyl 86.0 1.2 2.5E-05 37.7 4.3 39 148-186 7-46 (306)
447 cd08233 butanediol_DH_like (2R 85.9 1.1 2.3E-05 38.4 4.2 36 151-186 171-207 (351)
448 PRK06128 oxidoreductase; Provi 85.9 1.1 2.4E-05 37.6 4.1 36 150-185 52-88 (300)
449 PLN02602 lactate dehydrogenase 85.8 1.3 2.8E-05 38.7 4.6 33 154-186 38-72 (350)
450 PF00743 FMO-like: Flavin-bind 85.8 1.2 2.7E-05 41.0 4.7 39 148-186 178-216 (531)
451 TIGR01316 gltA glutamate synth 85.8 2 4.3E-05 38.6 5.9 39 149-187 129-167 (449)
452 PLN02572 UDP-sulfoquinovose sy 85.6 1.1 2.3E-05 40.3 4.1 38 147-184 41-79 (442)
453 TIGR03026 NDP-sugDHase nucleot 85.6 1.4 3E-05 39.1 4.7 40 149-188 309-358 (411)
454 PRK09754 phenylpropionate diox 85.6 1.1 2.4E-05 39.3 4.2 35 152-186 143-177 (396)
455 PRK07791 short chain dehydroge 85.5 1.2 2.6E-05 37.3 4.1 36 151-186 4-40 (286)
456 PRK05249 soluble pyridine nucl 85.5 1.1 2.4E-05 40.2 4.1 34 153-186 175-208 (461)
457 PRK13512 coenzyme A disulfide 85.5 1.1 2.4E-05 40.0 4.1 35 152-186 147-181 (438)
458 PRK14804 ornithine carbamoyltr 85.4 5.8 0.00012 34.1 8.3 37 150-186 150-187 (311)
459 cd08299 alcohol_DH_class_I_II_ 85.4 1.2 2.5E-05 38.9 4.1 36 151-186 189-225 (373)
460 PTZ00317 NADP-dependent malic 85.4 6.6 0.00014 36.4 9.0 91 73-186 239-341 (559)
461 cd08282 PFDH_like Pseudomonas 85.4 1.2 2.6E-05 38.7 4.2 35 151-185 175-210 (375)
462 COG0493 GltD NADPH-dependent g 85.3 2.2 4.8E-05 38.6 5.9 43 147-189 117-159 (457)
463 PRK12938 acetyacetyl-CoA reduc 85.2 1.3 2.9E-05 35.6 4.2 33 151-183 1-34 (246)
464 PRK01713 ornithine carbamoyltr 85.0 5.7 0.00012 34.5 8.1 36 150-185 153-190 (334)
465 PF13380 CoA_binding_2: CoA bi 84.9 1.2 2.7E-05 32.3 3.5 34 154-187 1-38 (116)
466 TIGR01283 nifE nitrogenase mol 84.9 4.9 0.00011 36.3 8.0 35 149-183 322-356 (456)
467 PRK12937 short chain dehydroge 84.9 1.5 3.2E-05 35.2 4.3 36 150-185 2-38 (245)
468 PRK06370 mercuric reductase; V 84.9 1.2 2.6E-05 40.0 4.1 34 153-186 171-204 (463)
469 PTZ00058 glutathione reductase 84.8 1.1 2.3E-05 41.7 3.8 34 153-186 237-270 (561)
470 cd08274 MDR9 Medium chain dehy 84.8 1.4 2.9E-05 37.6 4.2 34 152-185 177-211 (350)
471 PF00185 OTCace: Aspartate/orn 84.8 1.3 2.9E-05 34.0 3.8 35 152-186 1-37 (158)
472 KOG1209 1-Acyl dihydroxyaceton 84.8 1.4 3.1E-05 36.0 4.0 37 152-188 6-44 (289)
473 PRK06116 glutathione reductase 84.8 1.3 2.7E-05 39.7 4.1 34 153-186 167-200 (450)
474 PRK06292 dihydrolipoamide dehy 84.7 1.2 2.6E-05 39.9 4.0 35 152-186 168-202 (460)
475 PLN02172 flavin-containing mon 84.7 1.3 2.9E-05 40.0 4.2 38 150-187 7-44 (461)
476 PRK06416 dihydrolipoamide dehy 84.6 1.3 2.8E-05 39.8 4.1 34 153-186 172-205 (462)
477 PLN02206 UDP-glucuronate decar 84.6 1.3 2.7E-05 39.9 4.0 38 148-185 114-152 (442)
478 KOG1201 Hydroxysteroid 17-beta 84.6 5 0.00011 34.2 7.3 41 147-187 32-73 (300)
479 COG0362 Gnd 6-phosphogluconate 84.5 0.99 2.1E-05 40.0 3.2 36 153-188 3-38 (473)
480 PRK08063 enoyl-(acyl carrier p 84.5 1.4 3E-05 35.5 4.0 35 151-185 2-38 (250)
481 PRK15182 Vi polysaccharide bio 84.5 3.6 7.7E-05 36.9 6.8 39 148-186 309-357 (425)
482 PRK05579 bifunctional phosphop 84.4 1.5 3.2E-05 39.0 4.4 38 149-186 184-238 (399)
483 PRK07846 mycothione reductase; 84.4 1.3 2.9E-05 39.7 4.2 34 153-186 166-199 (451)
484 PRK06300 enoyl-(acyl carrier p 84.4 1.4 3.1E-05 37.4 4.1 36 149-184 4-42 (299)
485 PRK14183 bifunctional 5,10-met 84.3 1.9 4.2E-05 36.5 4.7 54 148-201 152-208 (281)
486 cd08264 Zn_ADH_like2 Alcohol d 84.3 1.2 2.6E-05 37.5 3.6 34 151-184 161-195 (325)
487 KOG0029 Amine oxidase [Seconda 84.2 1.2 2.6E-05 40.8 3.7 38 149-186 11-48 (501)
488 cd08285 NADP_ADH NADP(H)-depen 84.2 1.4 3.1E-05 37.7 4.1 35 152-186 166-201 (351)
489 PRK12747 short chain dehydroge 84.1 1.6 3.5E-05 35.3 4.2 33 151-183 2-35 (252)
490 TIGR01421 gluta_reduc_1 glutat 84.1 1.3 2.8E-05 39.8 3.9 34 153-186 166-199 (450)
491 PRK07201 short chain dehydroge 84.1 1.8 4E-05 40.4 5.1 37 150-186 368-405 (657)
492 PLN02583 cinnamoyl-CoA reducta 84.0 1.5 3.2E-05 36.9 4.1 34 152-185 5-39 (297)
493 PRK12550 shikimate 5-dehydroge 84.0 1.3 2.8E-05 37.3 3.6 34 153-186 122-156 (272)
494 COG0460 ThrA Homoserine dehydr 84.0 0.65 1.4E-05 40.2 1.8 22 153-174 3-24 (333)
495 PRK05976 dihydrolipoamide dehy 83.9 1.3 2.9E-05 39.8 4.0 34 153-186 180-213 (472)
496 cd08284 FDH_like_2 Glutathione 83.9 1.5 3.3E-05 37.2 4.2 35 151-185 166-201 (344)
497 PRK08618 ornithine cyclodeamin 83.9 1.5 3.3E-05 37.7 4.1 35 152-186 126-162 (325)
498 PRK13984 putative oxidoreducta 83.8 1.6 3.4E-05 40.7 4.5 37 151-187 281-317 (604)
499 PRK06115 dihydrolipoamide dehy 83.8 1.5 3.2E-05 39.6 4.2 34 153-186 174-207 (466)
500 PRK09134 short chain dehydroge 83.8 2 4.4E-05 34.9 4.7 37 149-185 5-42 (258)
No 1
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-41 Score=287.99 Aligned_cols=161 Identities=24% Similarity=0.352 Sum_probs=148.0
Q ss_pred CCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHH
Q 028302 46 ISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLML 125 (210)
Q Consensus 46 ~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L 125 (210)
.+++.+.++++|+++.+..+++++.++.+|+||||++.++|+|++|+++++++||.|+|+||+ ++.+||||+++++|
T Consensus 33 ~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~VAE~a~~l~L 109 (311)
T PRK08410 33 PEEVIERIKDANIIITNKVVIDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGY---STESVAQHTFAMLL 109 (311)
T ss_pred HHHHHHHhCCCCEEEECCCCCCHHHHhhCCCCeEEEEcccccccccHHHHHhCCCEEEcCCCC---CChHHHHHHHHHHH
Confidence 456678889999998876789999999999999999999999999999999999999999999 88999999999999
Q ss_pred HHHhhHHHHHHHHHhCCCCCC--------cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC---------
Q 028302 126 GLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS--------- 188 (210)
Q Consensus 126 ~~~R~~~~~~~~~~~~~w~~~--------~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~--------- 188 (210)
+++|++..+++.++++.|... .+++|+||||||||+|+||+++|+++++|||+|++|||+.+.
T Consensus 110 ~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~ 189 (311)
T PRK08410 110 SLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKNEEYERVS 189 (311)
T ss_pred HHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccccCceeec
Confidence 999999999999999999742 146899999999999999999999999999999999997532
Q ss_pred --CCcccCceeEEecCCCCCCCCC
Q 028302 189 --HSQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 189 --~~~~~~~~~~~~~Plt~~~T~h 210 (210)
+++.++|.+++.||+|+ +|+|
T Consensus 190 l~ell~~sDvv~lh~Plt~-~T~~ 212 (311)
T PRK08410 190 LEELLKTSDIISIHAPLNE-KTKN 212 (311)
T ss_pred HHHHhhcCCEEEEeCCCCc-hhhc
Confidence 15789999999999999 9997
No 2
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=2.7e-41 Score=291.48 Aligned_cols=203 Identities=66% Similarity=1.060 Sum_probs=178.1
Q ss_pred CCCCCcceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEcccc
Q 028302 7 SSDKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVG 86 (210)
Q Consensus 7 ~~~~~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG 86 (210)
.+++.+|+|+++.+.++....+.++.++.++.+.+...+.+++.+.++++|+++++..+++++.++.+|+||||++.++|
T Consensus 13 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G 92 (347)
T PLN02928 13 HSDMRPTRVLFCGPEFPASYSYTREYLQKYPFIQVDAVAREDVPDVIANYDICVPKMMRLDADIIARASQMKLIMQFGVG 92 (347)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHhhcCCeeEecCCCHHHHHHHhcCCcEEEECCCCCCHHHHhcCCCceEEEECCcc
Confidence 56778889999988776545566777777776655556666778888999998887678999999999999999999999
Q ss_pred CCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHH
Q 028302 87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGV 166 (210)
Q Consensus 87 ~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~ 166 (210)
+|++|++++.++||.|+|+++++++|+.+||||+++++|+++|++..+.+.++++.|....+.+|.||||||||+|+||+
T Consensus 93 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~ 172 (347)
T PLN02928 93 LEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGI 172 (347)
T ss_pred cCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHH
Confidence 99999999999999999999975558899999999999999999999999999999986666899999999999999999
Q ss_pred HHHHHhccCCCEEEEEcCCCCC---------------------------CCcccCceeEEecCCCCCCCCC
Q 028302 167 ELAKRLRPFGVKIIATKRSWAS---------------------------HSQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 167 ~vA~~~~~fg~~V~~~~~~~~~---------------------------~~~~~~~~~~~~~Plt~~~T~h 210 (210)
++|++|++|||+|++|||+.++ +.+.++|.+++.+|+|+ +|+|
T Consensus 173 ~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~-~T~~ 242 (347)
T PLN02928 173 ELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTK-ETAG 242 (347)
T ss_pred HHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCCh-Hhhc
Confidence 9999999999999999986321 14568999999999999 9987
No 3
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-41 Score=288.94 Aligned_cols=191 Identities=29% Similarity=0.429 Sum_probs=162.6
Q ss_pred cceEEEeCCCCCCchhhHHHHhhcCCCeEEe---cCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCC
Q 028302 12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVD---VVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLE 88 (210)
Q Consensus 12 ~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d 88 (210)
+++++......++ ..+.+... ..+.+. ..+.+++.+.++++|++++..++++++.++.+|+||||++.++|+|
T Consensus 3 ~~~vl~~~~~~~~---~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~v~~~~l~~~~~Lk~I~~~g~Gvd 78 (324)
T COG0111 3 MIKVLVTDPLAPD---ALEELLAA-YDVEVPDGPDLDEEELLEALADADALIVSVTPVTEEVLAAAPNLKAIGRAGAGVD 78 (324)
T ss_pred cceeeccCccCHH---HHHHHHhc-cccccccccccchHHHHhhcccCcEEEEecCCCCHHHHhhCCCceEEEEcccccc
Confidence 4567776665432 33333333 223332 2234556788899998887778999999999999999999999999
Q ss_pred ccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC--CcccccccCeEEEEecChHHH
Q 028302 89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGV 166 (210)
Q Consensus 89 ~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~~~tvGIiG~G~IG~ 166 (210)
++|.+++.++||.|+|+|+. |+.+||||+++++|+++|+++.+++.++++.|.+ ..+.+|+||||||||+|+||+
T Consensus 79 ~id~~~~~~~gi~V~nap~~---na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~ 155 (324)
T COG0111 79 NIDLEAATKRGILVVNAPGG---NAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGR 155 (324)
T ss_pred ccCHHHHhhcCCEEEeCCCc---chHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHH
Confidence 99999999999999999998 9999999999999999999999999999999996 456799999999999999999
Q ss_pred HHHHHhccCCCEEEEEcCCCCCC---------------CcccCceeEEecCCCCCCCCC
Q 028302 167 ELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 167 ~vA~~~~~fg~~V~~~~~~~~~~---------------~~~~~~~~~~~~Plt~~~T~h 210 (210)
++|+++++|||+|++|||+.+++ ++.++|.+++.+|+|+ +|+|
T Consensus 156 ~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~-eT~g 213 (324)
T COG0111 156 AVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTP-ETRG 213 (324)
T ss_pred HHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCc-chhc
Confidence 99999999999999999954332 6889999999999999 9997
No 4
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-40 Score=284.66 Aligned_cols=194 Identities=22% Similarity=0.333 Sum_probs=161.4
Q ss_pred ceEEEeCCC-CCCchhhHHHHhhcCCCeEEecC-CCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCCcc
Q 028302 13 TRVLFCGPH-FPASHNYTKEYLQNYPSIQVDVV-PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGV 90 (210)
Q Consensus 13 ~~ili~~~~-~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~i 90 (210)
|||+++... .+......+.+.+.++++.+... +.+++.+.++++|+++.+..+++++.++++|+||||++.++|+|++
T Consensus 1 m~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 80 (317)
T PRK06487 1 MRAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNKVALDAAALAAAPQLKLILVAATGTNNV 80 (317)
T ss_pred CeEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEeCCCCCHHHHhhCCCCeEEEEcCcccccc
Confidence 357766543 11111122233334566555432 3456778889999988776789999999999999999999999999
Q ss_pred chhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC--------cccccccCeEEEEecC
Q 028302 91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFG 162 (210)
Q Consensus 91 d~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--------~~~~l~~~tvGIiG~G 162 (210)
|.+.+.++||.|+|++|+ ++.+||||+++++|+++|++..+++.++++.|... .+++|.||||||||+|
T Consensus 81 d~~~~~~~gI~v~n~~g~---~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G 157 (317)
T PRK06487 81 DLAAARERGITVCNCQGY---GTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHG 157 (317)
T ss_pred CHHHHHHCCCEEEeCCCC---CcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCC
Confidence 999999999999999998 88999999999999999999999999999999743 2468999999999999
Q ss_pred hHHHHHHHHhccCCCEEEEEcCCCCC---------CCcccCceeEEecCCCCCCCCC
Q 028302 163 NIGVELAKRLRPFGVKIIATKRSWAS---------HSQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 163 ~IG~~vA~~~~~fg~~V~~~~~~~~~---------~~~~~~~~~~~~~Plt~~~T~h 210 (210)
+||+++|+++++|||+|++|||+.++ +++.++|.+++.||+|+ +|+|
T Consensus 158 ~IG~~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~sDiv~l~lPlt~-~T~~ 213 (317)
T PRK06487 158 ELGGAVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQVDALTLHCPLTE-HTRH 213 (317)
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhCCEEEECCCCCh-HHhc
Confidence 99999999999999999999987542 25789999999999999 9997
No 5
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=2.1e-40 Score=282.43 Aligned_cols=159 Identities=28% Similarity=0.458 Sum_probs=147.6
Q ss_pred ChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHH
Q 028302 48 DVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLG 126 (210)
Q Consensus 48 ~~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~ 126 (210)
++.+.++++|++++. +.+++.+.++++|+||+|+..++||||||++++.++||.|+|+|++ +.++||||+++++|+
T Consensus 37 ~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~---~t~sVAe~~~aLiLa 113 (324)
T COG1052 37 ELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGY---STEAVAEHAVALILA 113 (324)
T ss_pred HHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCC---CchHHHHHHHHHHHH
Confidence 346778999998885 6889999999999999999999999999999999999999999999 569999999999999
Q ss_pred HHhhHHHHHHHHHhCCCCC------CcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC-----------
Q 028302 127 LLRKQNEMRMAIEQKKLGV------PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------- 189 (210)
Q Consensus 127 ~~R~~~~~~~~~~~~~w~~------~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~----------- 189 (210)
+.|++.+.++.+++|.|.. ..+.+++|||+||||+|+||+++|+++++|||+|+||||+++++
T Consensus 114 ~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~ 193 (324)
T COG1052 114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVD 193 (324)
T ss_pred HhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceecc
Confidence 9999999999999999875 35679999999999999999999999999999999999987422
Q ss_pred ---CcccCceeEEecCCCCCCCCC
Q 028302 190 ---SQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 190 ---~~~~~~~~~~~~Plt~~~T~h 210 (210)
++.++|.+++.||+|+ +|+|
T Consensus 194 l~ell~~sDii~l~~Plt~-~T~h 216 (324)
T COG1052 194 LDELLAESDIISLHCPLTP-ETRH 216 (324)
T ss_pred HHHHHHhCCEEEEeCCCCh-HHhh
Confidence 6889999999999999 9998
No 6
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-40 Score=283.85 Aligned_cols=162 Identities=16% Similarity=0.255 Sum_probs=147.8
Q ss_pred CCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHH
Q 028302 45 PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLM 124 (210)
Q Consensus 45 ~~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~ 124 (210)
+.+++.+.++++|+++....+++++.++++|+||||++.++|+|+||.+++.++||.|+|++|+ ++.+||||+++++
T Consensus 34 ~~~~~~~~~~~~d~ii~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~i~l~ 110 (314)
T PRK06932 34 SAEQTIERAKDADIVITSKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGY---SSTTVPEHVLGMI 110 (314)
T ss_pred ChHHHHHHhCCCcEEEEeCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCC---ChhHHHHHHHHHH
Confidence 4566778889999888766679999999999999999999999999999999999999999999 8899999999999
Q ss_pred HHHHhhHHHHHHHHHhCCCCCC--------cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC---------
Q 028302 125 LGLLRKQNEMRMAIEQKKLGVP--------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA--------- 187 (210)
Q Consensus 125 L~~~R~~~~~~~~~~~~~w~~~--------~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~--------- 187 (210)
|++.|++..+++.++++.|... .+.+|+||||||||+|+||+++|+++++|||+|++||++..
T Consensus 111 l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~ 190 (314)
T PRK06932 111 FALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCREGYTP 190 (314)
T ss_pred HHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccccccCC
Confidence 9999999999999999999742 24689999999999999999999999999999999998642
Q ss_pred -CCCcccCceeEEecCCCCCCCCC
Q 028302 188 -SHSQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 188 -~~~~~~~~~~~~~~Plt~~~T~h 210 (210)
++.+.++|.+++.||+|+ +|+|
T Consensus 191 l~ell~~sDiv~l~~Plt~-~T~~ 213 (314)
T PRK06932 191 FEEVLKQADIVTLHCPLTE-TTQN 213 (314)
T ss_pred HHHHHHhCCEEEEcCCCCh-HHhc
Confidence 135789999999999999 9987
No 7
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=1.1e-40 Score=285.06 Aligned_cols=191 Identities=19% Similarity=0.272 Sum_probs=160.0
Q ss_pred cceEEEeCCCCCCchhhHHHHhhcCCCeEEec-C---CCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccC
Q 028302 12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-V---PISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGL 87 (210)
Q Consensus 12 ~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~-~---~~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~ 87 (210)
+|+|+++.+..+ ...+. ++...++.+.. . +.+++.+.++++|++++...++++++++++|+||||++.|+|+
T Consensus 2 ~~~vl~~~~~~~---~~~~~-l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~l~~~p~Lk~I~~~g~G~ 77 (323)
T PRK15409 2 KPSVILYKALPD---DLLQR-LEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSGEKVDAALLEKMPKLRAASTISVGY 77 (323)
T ss_pred CceEEEeCCCCH---HHHHH-HHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcCCCCCHHHHhhCCCCeEEEECceec
Confidence 368999986432 22233 33322333221 1 2234567788999998766689999999999999999999999
Q ss_pred CccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC-----cccccccCeEEEEecC
Q 028302 88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP-----TGETLLGKTVFILGFG 162 (210)
Q Consensus 88 d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~-----~~~~l~~~tvGIiG~G 162 (210)
|+||++++.++||.|+|+||+ ++++||||+++++|+++|++..+++.+++|.|... .+.+|+||||||||+|
T Consensus 78 d~id~~~~~~~gI~V~n~~~~---~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G 154 (323)
T PRK15409 78 DNFDVDALTARKILLMHTPTV---LTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMG 154 (323)
T ss_pred ccccHHHHHHCCCEEEeCCCC---CchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEccc
Confidence 999999999999999999999 88999999999999999999999999999999642 4679999999999999
Q ss_pred hHHHHHHHHhc-cCCCEEEEEcCCCCC--------------CCcccCceeEEecCCCCCCCCC
Q 028302 163 NIGVELAKRLR-PFGVKIIATKRSWAS--------------HSQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 163 ~IG~~vA~~~~-~fg~~V~~~~~~~~~--------------~~~~~~~~~~~~~Plt~~~T~h 210 (210)
+||+++|++++ +|||+|++|||+.++ +++.++|.+++.||+|+ +|+|
T Consensus 155 ~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~-~T~~ 216 (323)
T PRK15409 155 RIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTD-ETHH 216 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCCh-HHhh
Confidence 99999999998 999999999987432 15789999999999999 9987
No 8
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-38 Score=279.88 Aligned_cols=197 Identities=21% Similarity=0.243 Sum_probs=163.1
Q ss_pred CCCCCcceEEEeCCCCCCchhhHHHHhhcCC-CeEEe--cCCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEE
Q 028302 7 SSDKNITRVLFCGPHFPASHNYTKEYLQNYP-SIQVD--VVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQ 82 (210)
Q Consensus 7 ~~~~~~~~ili~~~~~~~~~~~~~~~~~~~~-~v~~~--~~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~ 82 (210)
+..+.+|+|+++.+..++ ..+.+.+... ++.+. ..+.+++.+.++++|+++.. ..+++++.++++|+||||++
T Consensus 5 ~~~~~~~~ili~~~~~~~---~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~ 81 (409)
T PRK11790 5 SLPKDKIKFLLLEGVHQS---AVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGC 81 (409)
T ss_pred CCCCCCeEEEEECCCCHH---HHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEE
Confidence 556678899998654322 2222222222 33322 12345667788999988764 35799999999999999999
Q ss_pred ccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC--cccccccCeEEEEe
Q 028302 83 FGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILG 160 (210)
Q Consensus 83 ~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~~~tvGIiG 160 (210)
.|+|+|+||++.+.++||.|+|+||+ ++.+||||+++++|++.|++..+++.++++.|... .+.+|.||||||||
T Consensus 82 ~~~G~d~id~~~~~~~gI~V~n~pg~---~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG 158 (409)
T PRK11790 82 FCIGTNQVDLDAAAKRGIPVFNAPFS---NTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVG 158 (409)
T ss_pred CceecccccHHHHHhCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEEC
Confidence 99999999999999999999999999 88999999999999999999999999999999853 46899999999999
Q ss_pred cChHHHHHHHHhccCCCEEEEEcCCCCC------------CCcccCceeEEecCCCCCCCCC
Q 028302 161 FGNIGVELAKRLRPFGVKIIATKRSWAS------------HSQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 161 ~G~IG~~vA~~~~~fg~~V~~~~~~~~~------------~~~~~~~~~~~~~Plt~~~T~h 210 (210)
+|+||+++|+++++|||+|++||++... +++.++|.++..||+|+ +|+|
T Consensus 159 ~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~-~T~~ 219 (409)
T PRK11790 159 YGHIGTQLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETP-STKN 219 (409)
T ss_pred CCHHHHHHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCCh-HHhh
Confidence 9999999999999999999999986421 14678999999999999 9997
No 9
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=1.3e-38 Score=273.58 Aligned_cols=190 Identities=24% Similarity=0.380 Sum_probs=158.0
Q ss_pred ceEEEeCCCCCCchhhHHHHhhcCCCeEEec----CCCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEEccccC
Q 028302 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV----VPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGL 87 (210)
Q Consensus 13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~p~Lk~i~~~~aG~ 87 (210)
|+|+++.+.. ....+.+.+.+ ++.+.. .+.+++.+.++++|++++.. .++++++++++|+||||++.++|+
T Consensus 3 ~kil~~~~~~---~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~ 78 (333)
T PRK13243 3 PKVFITREIP---ENGIEMLEEHF-EVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGY 78 (333)
T ss_pred ceEEEECCCC---HHHHHHHhcCc-eEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccc
Confidence 6888886532 22223333322 333221 12344667789999988753 479999999999999999999999
Q ss_pred CccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC---------cccccccCeEEE
Q 028302 88 EGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---------TGETLLGKTVFI 158 (210)
Q Consensus 88 d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---------~~~~l~~~tvGI 158 (210)
|++|++++.++||.|+|++|+ |+.+||||+++++|+++|++..+++.++++.|... .+.+|+||||||
T Consensus 79 d~id~~~~~~~gI~v~n~~g~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgI 155 (333)
T PRK13243 79 DNIDVEEATRRGIYVTNTPGV---LTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGI 155 (333)
T ss_pred cccCHHHHHHcCCEEEECCCC---ChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEE
Confidence 999999999999999999999 89999999999999999999999999999999741 357899999999
Q ss_pred EecChHHHHHHHHhccCCCEEEEEcCCCCCC--------------CcccCceeEEecCCCCCCCCC
Q 028302 159 LGFGNIGVELAKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 159 iG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~--------------~~~~~~~~~~~~Plt~~~T~h 210 (210)
||+|+||+.+|+++++|||+|++|||++++. .+.++|.+++.+|+|+ +|+|
T Consensus 156 iG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~-~T~~ 220 (333)
T PRK13243 156 IGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTK-ETYH 220 (333)
T ss_pred ECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCCh-HHhh
Confidence 9999999999999999999999999875431 4678999999999999 9986
No 10
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-36 Score=273.30 Aligned_cols=190 Identities=34% Similarity=0.512 Sum_probs=160.3
Q ss_pred ceEEEeCCCCCCchhhHHHHhhcCCCeEEec---CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEEccccCC
Q 028302 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLE 88 (210)
Q Consensus 13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~~~aG~d 88 (210)
|+|+++.+..+ .. .+.++..+++++.. .+.+++.+.++++|++++. ..++++++++++|+||||++.++|+|
T Consensus 1 m~ili~~~~~~---~~-~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d 76 (526)
T PRK13581 1 MKVLVSDPISP---AG-LEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVD 76 (526)
T ss_pred CeEEEeCCCCH---HH-HHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccc
Confidence 47888865432 22 23333333444432 2345667888999998875 35799999999999999999999999
Q ss_pred ccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC--cccccccCeEEEEecChHHH
Q 028302 89 GVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGV 166 (210)
Q Consensus 89 ~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~~~tvGIiG~G~IG~ 166 (210)
++|++++.++||.|+|+|++ |+.+||||+++++|+++|+++.+++.++++.|... .+.+|.||||||||+|+||+
T Consensus 77 ~id~~~~~~~gI~V~n~p~~---~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~ 153 (526)
T PRK13581 77 NVDVPAATRRGIIVVNAPTG---NTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGS 153 (526)
T ss_pred cccHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHH
Confidence 99999999999999999998 88999999999999999999999999999999753 46899999999999999999
Q ss_pred HHHHHhccCCCEEEEEcCCCCC--------------CCcccCceeEEecCCCCCCCCC
Q 028302 167 ELAKRLRPFGVKIIATKRSWAS--------------HSQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 167 ~vA~~~~~fg~~V~~~~~~~~~--------------~~~~~~~~~~~~~Plt~~~T~h 210 (210)
.+|+++++|||+|++|||+..+ +.+.++|.+++.+|+|+ +|+|
T Consensus 154 ~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~-~t~~ 210 (526)
T PRK13581 154 EVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTP-ETRG 210 (526)
T ss_pred HHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCCh-Hhhc
Confidence 9999999999999999986432 15678999999999999 9987
No 11
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-36 Score=263.05 Aligned_cols=160 Identities=30% Similarity=0.467 Sum_probs=145.8
Q ss_pred CChhhhcCCceEEEEcC---CCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHH
Q 028302 47 SDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123 (210)
Q Consensus 47 ~~~~~~~~~adv~i~~~---~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~ 123 (210)
+++.+.++++|++++.. .+++++.++++|+||||++.++|+|++|++++.++||.|+|++++ |+.+||||++++
T Consensus 82 ~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~---~a~~VAE~al~l 158 (385)
T PRK07574 82 SDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGS---NSISVAEHVVMM 158 (385)
T ss_pred HHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCC---chHHHHHHHHHH
Confidence 55677889999998742 469999999999999999999999999999999999999999998 899999999999
Q ss_pred HHHHHhhHHHHHHHHHhCCCCCC----cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC-----------
Q 028302 124 MLGLLRKQNEMRMAIEQKKLGVP----TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS----------- 188 (210)
Q Consensus 124 ~L~~~R~~~~~~~~~~~~~w~~~----~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~----------- 188 (210)
+|++.|++..+++.++++.|... .+.+|.|+||||||+|+||+.+|++|++|||+|++|||+..+
T Consensus 159 ~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~ 238 (385)
T PRK07574 159 ILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTY 238 (385)
T ss_pred HHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCcee
Confidence 99999999999999999999752 457899999999999999999999999999999999997521
Q ss_pred -----CCcccCceeEEecCCCCCCCCC
Q 028302 189 -----HSQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 189 -----~~~~~~~~~~~~~Plt~~~T~h 210 (210)
+++..+|.+++.||+|+ +|+|
T Consensus 239 ~~~l~ell~~aDvV~l~lPlt~-~T~~ 264 (385)
T PRK07574 239 HVSFDSLVSVCDVVTIHCPLHP-ETEH 264 (385)
T ss_pred cCCHHHHhhcCCEEEEcCCCCH-HHHH
Confidence 14789999999999999 9986
No 12
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-36 Score=261.80 Aligned_cols=160 Identities=26% Similarity=0.395 Sum_probs=145.1
Q ss_pred CChhhhcCCceEEEEcC---CCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHH
Q 028302 47 SDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123 (210)
Q Consensus 47 ~~~~~~~~~adv~i~~~---~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~ 123 (210)
+++.+.++++|++++.. .+++++.++++|+||||++.++|+|+||++++.++||.|+|++|+ |+.+||||++++
T Consensus 89 ~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~---na~sVAE~al~l 165 (386)
T PLN03139 89 CELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGS---NVVSVAEDELMR 165 (386)
T ss_pred HHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCc---CcHHHHHHHHHH
Confidence 45677889999998743 359999999999999999999999999999999999999999998 899999999999
Q ss_pred HHHHHhhHHHHHHHHHhCCCCC----CcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC-----------
Q 028302 124 MLGLLRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS----------- 188 (210)
Q Consensus 124 ~L~~~R~~~~~~~~~~~~~w~~----~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~----------- 188 (210)
+|++.|++..+++.++++.|.. ..+++|.||||||||+|+||+++|+++++|||+|++||++..+
T Consensus 166 iL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~ 245 (386)
T PLN03139 166 ILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKF 245 (386)
T ss_pred HHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCcee
Confidence 9999999999999999999974 2467999999999999999999999999999999999987421
Q ss_pred -----CCcccCceeEEecCCCCCCCCC
Q 028302 189 -----HSQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 189 -----~~~~~~~~~~~~~Plt~~~T~h 210 (210)
+++.++|.+++.+|+|+ +|+|
T Consensus 246 ~~~l~ell~~sDvV~l~lPlt~-~T~~ 271 (386)
T PLN03139 246 EEDLDAMLPKCDVVVINTPLTE-KTRG 271 (386)
T ss_pred cCCHHHHHhhCCEEEEeCCCCH-HHHH
Confidence 14678999999999999 9986
No 13
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=5.4e-36 Score=271.05 Aligned_cols=162 Identities=28% Similarity=0.460 Sum_probs=147.2
Q ss_pred CCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHH
Q 028302 45 PISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYL 123 (210)
Q Consensus 45 ~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~ 123 (210)
+.+++.+.++++|++++.. .++++++++++|+||||++.++|+|++|++++.++||.|+|+||+ |+.+||||++++
T Consensus 30 ~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~---~~~~vAE~~~~l 106 (525)
T TIGR01327 30 SREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTG---NTISAAEHALAM 106 (525)
T ss_pred CHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCc---ChHHHHHHHHHH
Confidence 3466778889999988753 579999999999999999999999999999999999999999998 899999999999
Q ss_pred HHHHHhhHHHHHHHHHhCCCCCC--cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC-------------
Q 028302 124 MLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS------------- 188 (210)
Q Consensus 124 ~L~~~R~~~~~~~~~~~~~w~~~--~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~------------- 188 (210)
+|+++|+++.+++.++++.|... .+.+|.||||||||+|+||+.+|++|++|||+|++|||+..+
T Consensus 107 ~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~ 186 (525)
T TIGR01327 107 LLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDD 186 (525)
T ss_pred HHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCC
Confidence 99999999999999999999753 468999999999999999999999999999999999985321
Q ss_pred --CCcccCceeEEecCCCCCCCCC
Q 028302 189 --HSQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 189 --~~~~~~~~~~~~~Plt~~~T~h 210 (210)
+.+..+|.+++.+|+|+ +|+|
T Consensus 187 l~ell~~aDvV~l~lPlt~-~T~~ 209 (525)
T TIGR01327 187 LDELLARADFITVHTPLTP-ETRG 209 (525)
T ss_pred HHHHHhhCCEEEEccCCCh-hhcc
Confidence 14678999999999999 9987
No 14
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=9.6e-36 Score=259.43 Aligned_cols=194 Identities=21% Similarity=0.245 Sum_probs=155.5
Q ss_pred CcceEEEeCCCCCCchhhHHHHhhcCCCeEEec-----CCCCChhhhc-CCceEEEEc-CCCCCHHHHhcCCC--ceEEE
Q 028302 11 NITRVLFCGPHFPASHNYTKEYLQNYPSIQVDV-----VPISDVPDVI-ANYHLCVVK-TMRLDSNCISRANQ--MKLIM 81 (210)
Q Consensus 11 ~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~~~~-~~adv~i~~-~~~~~~~~l~~~p~--Lk~i~ 81 (210)
.+++|+++.+..++ ...+.+.+..-++.+.. .+.+++.+.+ .++|++++. ..++++++++++|+ ||+|+
T Consensus 14 ~~~~v~~~~~~~~~--~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~ 91 (386)
T PLN02306 14 GKYRVVSTKPMPGT--RWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFS 91 (386)
T ss_pred CCceEEEeCCCCcH--HHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEEE
Confidence 36688888764331 12222222212332211 2345566666 469988875 35799999999995 69999
Q ss_pred EccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC-----CcccccccCeE
Q 028302 82 QFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV-----PTGETLLGKTV 156 (210)
Q Consensus 82 ~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~~~tv 156 (210)
+.++|+|+||++++.++||.|+|++|+ ++.+||||+++++|++.|++..+++.++++.|.. ..+.+|.||||
T Consensus 92 ~~~~G~D~iD~~aa~~~gI~V~n~pg~---~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktv 168 (386)
T PLN02306 92 NMAVGYNNVDVEAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTV 168 (386)
T ss_pred ECCcccccccHHHHHHCCCEEEECCCc---CHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEE
Confidence 999999999999999999999999998 8899999999999999999999999999998742 13678999999
Q ss_pred EEEecChHHHHHHHHhc-cCCCEEEEEcCCCCC------------------------------CCcccCceeEEecCCCC
Q 028302 157 FILGFGNIGVELAKRLR-PFGVKIIATKRSWAS------------------------------HSQVSCQSSGMLGPLSD 205 (210)
Q Consensus 157 GIiG~G~IG~~vA~~~~-~fg~~V~~~~~~~~~------------------------------~~~~~~~~~~~~~Plt~ 205 (210)
||||+|+||+++|++++ +|||+|++|||+.+. +.+.++|.+++.+|+|+
T Consensus 169 GIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~ 248 (386)
T PLN02306 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDK 248 (386)
T ss_pred EEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCCh
Confidence 99999999999999985 999999999986531 13578999999999999
Q ss_pred CCCCC
Q 028302 206 GETHH 210 (210)
Q Consensus 206 ~~T~h 210 (210)
+|+|
T Consensus 249 -~T~~ 252 (386)
T PLN02306 249 -TTYH 252 (386)
T ss_pred -hhhh
Confidence 9987
No 15
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=4.1e-36 Score=257.67 Aligned_cols=193 Identities=19% Similarity=0.305 Sum_probs=164.2
Q ss_pred cceEEEeCCCCCCchhhHHHHhhcCCCeEEecCC---CCChhhhcCCceEEEEc-CCCCCHHHHhcCC--CceEEEEccc
Q 028302 12 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVP---ISDVPDVIANYHLCVVK-TMRLDSNCISRAN--QMKLIMQFGV 85 (210)
Q Consensus 12 ~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p--~Lk~i~~~~a 85 (210)
||||+++... +++.++..++++.+ ++++...+ .++..+.++++|++++. ..+++++.++++| +||+|++.++
T Consensus 1 ~~~i~~~~~~-~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~ 78 (330)
T PRK12480 1 MTKIMFFGTR-DYEKEMALNWGKKN-NVEVTTSKELLSSATVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTA 78 (330)
T ss_pred CcEEEEEeCc-HHHHHHHHHHHHhc-CeEEEEcCCCCCHHHHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccc
Confidence 4899999865 44477777777766 45554322 23446788999988875 4589999999997 9999999999
Q ss_pred cCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCC--C-CcccccccCeEEEEecC
Q 028302 86 GLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--V-PTGETLLGKTVFILGFG 162 (210)
Q Consensus 86 G~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~--~-~~~~~l~~~tvGIiG~G 162 (210)
|+|++|++.+.++||.|+|+|++ ++++||||+++++|++.|++..+++.++++.|. . ..+++|+|+||||||+|
T Consensus 79 G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G 155 (330)
T PRK12480 79 GFDMYDLDLAKKHNIVISNVPSY---SPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTG 155 (330)
T ss_pred ccchhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCC
Confidence 99999999999999999999999 889999999999999999999999999998653 3 24689999999999999
Q ss_pred hHHHHHHHHhccCCCEEEEEcCCCCC------------CCcccCceeEEecCCCCCCCCC
Q 028302 163 NIGVELAKRLRPFGVKIIATKRSWAS------------HSQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 163 ~IG~~vA~~~~~fg~~V~~~~~~~~~------------~~~~~~~~~~~~~Plt~~~T~h 210 (210)
+||+.+|+++++|||+|++||++... +.+..+|.++..+|+|+ +|+|
T Consensus 156 ~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~-~t~~ 214 (330)
T PRK12480 156 RIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANK-ESYH 214 (330)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcH-HHHH
Confidence 99999999999999999999987531 15678999999999999 8865
No 16
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-35 Score=247.58 Aligned_cols=190 Identities=25% Similarity=0.361 Sum_probs=166.2
Q ss_pred eEEEeCCCCCCchhhHHHHhhcCCCeEEe-cCCCCChhhhcCCceEEEEc-CCCCCHHHHhc-CCCceEEEEccccCCcc
Q 028302 14 RVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPISDVPDVIANYHLCVVK-TMRLDSNCISR-ANQMKLIMQFGVGLEGV 90 (210)
Q Consensus 14 ~ili~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~-~p~Lk~i~~~~aG~d~i 90 (210)
+|+++.+... .-++.+.+.+.++++. ..+.|++.+.++++|+++++ .+.++++.|+. ..+||+|.+.++|+|++
T Consensus 8 ~il~~e~~~~---~~~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNV 84 (406)
T KOG0068|consen 8 KILVAESLDQ---ACIEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNV 84 (406)
T ss_pred eEEEecccch---HHHHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCcccc
Confidence 7888877532 3334444555566664 34566889999999988874 67899999994 56999999999999999
Q ss_pred chhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC--CcccccccCeEEEEecChHHHHH
Q 028302 91 DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV--PTGETLLGKTVFILGFGNIGVEL 168 (210)
Q Consensus 91 d~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~~~tvGIiG~G~IG~~v 168 (210)
|++++.++||.|.|+|.+ |..++||+++++++++.|++.+....+++|+|.. ..+.+|+|||+||+|+|+||+++
T Consensus 85 DL~AAte~gi~Vvn~P~~---Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseV 161 (406)
T KOG0068|consen 85 DLKAATENGILVVNTPTA---NSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEV 161 (406)
T ss_pred ChhhHHhCCeEEEeCCCC---ChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchHHH
Confidence 999999999999999999 8899999999999999999999999999999986 48899999999999999999999
Q ss_pred HHHhccCCCEEEEEcCCCCCC--------------CcccCceeEEecCCCCCCCCC
Q 028302 169 AKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 169 A~~~~~fg~~V~~~~~~~~~~--------------~~~~~~~~~~~~Plt~~~T~h 210 (210)
|+++++|||+|++||+..+.+ .++.+|.+...+|||| +|+|
T Consensus 162 A~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP-~T~~ 216 (406)
T KOG0068|consen 162 AVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTP-STEK 216 (406)
T ss_pred HHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCc-chhh
Confidence 999999999999999965432 6899999999999999 9987
No 17
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=3e-34 Score=246.55 Aligned_cols=192 Identities=18% Similarity=0.301 Sum_probs=157.8
Q ss_pred ceEEEeCCCCCCchhhHHHHhhcCCCeEEec---CCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCC--ceEEEEcccc
Q 028302 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDV---VPISDVPDVIANYHLCVVK-TMRLDSNCISRANQ--MKLIMQFGVG 86 (210)
Q Consensus 13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~--Lk~i~~~~aG 86 (210)
||+.++... +....+.+++.+.+ ++++.. ...++..+.++++|++++. ..+++++.++++|+ ||||+..|+|
T Consensus 2 ~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G 79 (332)
T PRK08605 2 TKIKIMSVR-DEDAPYIKAWAEKH-HVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAG 79 (332)
T ss_pred cEEEEEecC-HHHHHHHHHHHHhc-CeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccc
Confidence 344444322 23356667776655 444321 2334556778899988764 46899999999996 9999999999
Q ss_pred CCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC---CcccccccCeEEEEecCh
Q 028302 87 LEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV---PTGETLLGKTVFILGFGN 163 (210)
Q Consensus 87 ~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~~~tvGIiG~G~ 163 (210)
+|++|++++.++||.|+|++++ ++.+||||+++++|+++|++..+++.++++.|.. ..+++|+|+||||||+|+
T Consensus 80 ~d~id~~~~~~~gi~v~n~~~~---~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~ 156 (332)
T PRK08605 80 FDTYDLELATKYNLIISNVPSY---SPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGR 156 (332)
T ss_pred cchhhHHHHHHCCCEEEeCCCC---ChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCH
Confidence 9999999999999999999999 8899999999999999999999999999987642 246899999999999999
Q ss_pred HHHHHHHHh-ccCCCEEEEEcCCCCC-------------CCcccCceeEEecCCCCCCCCC
Q 028302 164 IGVELAKRL-RPFGVKIIATKRSWAS-------------HSQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 164 IG~~vA~~~-~~fg~~V~~~~~~~~~-------------~~~~~~~~~~~~~Plt~~~T~h 210 (210)
||+.+|+++ ++|||+|++||++... +.+.++|.++..+|+|+ +|+|
T Consensus 157 IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~-~t~~ 216 (332)
T PRK08605 157 IGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATK-YNHY 216 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCc-chhh
Confidence 999999999 8999999999987532 14678999999999999 9976
No 18
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=8.1e-34 Score=241.69 Aligned_cols=187 Identities=17% Similarity=0.207 Sum_probs=152.8
Q ss_pred ceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCCChhhhcCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCCccch
Q 028302 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDI 92 (210)
Q Consensus 13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~ 92 (210)
|.|++..+..+. ..+.+.+.+.+|++++..++.++ .+++|+++++. .+.+.++ .|+||||++.++|+|++|.
T Consensus 1 ~~~~~~~~~~~~-~~~~~~l~~~~p~~~~~~~~~~~----~~~a~~~~~~~--~~~~~l~-~~~Lk~I~~~~aG~d~i~~ 72 (312)
T PRK15469 1 MDIIFYHPTFDT-QWWIEALRKALPQARVRAWKSGD----NDPADYALVWH--PPVEMLA-GRDLKAVFALGAGVDSILS 72 (312)
T ss_pred CEEEEeCCccCH-HHHHHHHHHHCCCCeEEecCCCC----CccCeEEEEeC--CChHHhc-cCCceEEEEcccccchhhh
Confidence 467777665332 44666666778888876544432 46789888754 3567776 6899999999999999984
Q ss_pred hH-----HhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHH
Q 028302 93 NA-----ATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVE 167 (210)
Q Consensus 93 ~~-----~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~ 167 (210)
.. +.++||.|+|+++. +++.+||||+++++|++.|++..+.+.++++.|......+++|+||||||+|+||++
T Consensus 73 ~~~~~~~~~~~~i~v~~~~~~--~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~l~g~tvgIvG~G~IG~~ 150 (312)
T PRK15469 73 KLQAHPEMLDPSVPLFRLEDT--GMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYHREDFTIGILGAGVLGSK 150 (312)
T ss_pred hhccccccCCCCceEEEecCC--cccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCCcCCCEEEEECCCHHHHH
Confidence 32 44589999998763 278999999999999999999999999999999866567899999999999999999
Q ss_pred HHHHhccCCCEEEEEcCCCCCC--------------CcccCceeEEecCCCCCCCCC
Q 028302 168 LAKRLRPFGVKIIATKRSWASH--------------SQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 168 vA~~~~~fg~~V~~~~~~~~~~--------------~~~~~~~~~~~~Plt~~~T~h 210 (210)
+|+++++|||+|++||++.+.. .+.++|.+++.||+|+ +|+|
T Consensus 151 vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~-~T~~ 206 (312)
T PRK15469 151 VAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTP-ETVG 206 (312)
T ss_pred HHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCH-HHHH
Confidence 9999999999999999865431 3578999999999999 9986
No 19
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=8.2e-34 Score=240.56 Aligned_cols=147 Identities=22% Similarity=0.312 Sum_probs=129.1
Q ss_pred cCCceEEEEcCCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHH
Q 028302 53 IANYHLCVVKTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQN 132 (210)
Q Consensus 53 ~~~adv~i~~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~ 132 (210)
..++|++++... +..+++||||++.++|+|++|.+++.++++.++|. |. ++.+||||+++++|+++|+++
T Consensus 32 ~~~a~~~~~~~~------~~~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~---~~~~VAE~~l~l~L~l~R~i~ 101 (303)
T PRK06436 32 YYDAEAILIKGR------YVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GA---YSISVAEHAFALLLAWAKNIC 101 (303)
T ss_pred cCCCCEEEecCC------cCCCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CC---CcHHHHHHHHHHHHHHHcChH
Confidence 457888865332 23368999999999999999999998888877774 66 889999999999999999999
Q ss_pred HHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC-----------CcccCceeEEec
Q 028302 133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-----------SQVSCQSSGMLG 201 (210)
Q Consensus 133 ~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~-----------~~~~~~~~~~~~ 201 (210)
.+.+.++++.|....+.+|+||||||||+|+||+++|+++++|||+|++|||+..+. .+.++|.+++.|
T Consensus 102 ~~~~~~~~g~w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~aDiv~~~l 181 (303)
T PRK06436 102 ENNYNMKNGNFKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKSDFVLISL 181 (303)
T ss_pred HHHHHHHcCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhCCEEEECC
Confidence 999999999998766789999999999999999999999999999999999975321 367899999999
Q ss_pred CCCCCCCCC
Q 028302 202 PLSDGETHH 210 (210)
Q Consensus 202 Plt~~~T~h 210 (210)
|+|+ +|+|
T Consensus 182 p~t~-~T~~ 189 (303)
T PRK06436 182 PLTD-ETRG 189 (303)
T ss_pred CCCc-hhhc
Confidence 9999 9987
No 20
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=9.2e-33 Score=239.48 Aligned_cols=171 Identities=22% Similarity=0.323 Sum_probs=141.1
Q ss_pred ceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCCChhhhcCCceEEEEc-CCCCCHHHHhcCCCceEEEEccccCCccc
Q 028302 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVK-TMRLDSNCISRANQMKLIMQFGVGLEGVD 91 (210)
Q Consensus 13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~adv~i~~-~~~~~~~~l~~~p~Lk~i~~~~aG~d~id 91 (210)
|||++.... + ...++++.+.++.... ..+...+.++++|+++++ ...+++++++ .|+||||++.++|+||||
T Consensus 1 mkIl~d~~~-~----~~~~~~~~~~ev~~~~-~~~~~~~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD 73 (378)
T PRK15438 1 MKILVDENM-P----YARELFSRLGEVKAVP-GRPIPVAQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVD 73 (378)
T ss_pred CEEEEeCCc-c----hHHHHHhhcCcEEEeC-CCCCCHHHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccC
Confidence 588888653 2 3345666554554432 122335668999998875 4578999886 799999999999999999
Q ss_pred hhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHH
Q 028302 92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171 (210)
Q Consensus 92 ~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~ 171 (210)
.+++.++||.|+|+||+ |+.+||||+++++|++.|+. +.+|.||||||||+|+||+++|++
T Consensus 74 ~~~~~~~gI~v~napg~---na~aVAE~~~~~lL~l~r~~----------------g~~L~gktvGIIG~G~IG~~vA~~ 134 (378)
T PRK15438 74 EAWLKQAGIGFSAAPGC---NAIAVVEYVFSSLLMLAERD----------------GFSLHDRTVGIVGVGNVGRRLQAR 134 (378)
T ss_pred HHHHHHCCCEEEECCCc---CchHHHHHHHHHHHHHhccC----------------CCCcCCCEEEEECcCHHHHHHHHH
Confidence 99999999999999998 99999999999999999862 468999999999999999999999
Q ss_pred hccCCCEEEEEcCCCCC-----------CCcccCceeEEecCCCCCC----CCC
Q 028302 172 LRPFGVKIIATKRSWAS-----------HSQVSCQSSGMLGPLSDGE----THH 210 (210)
Q Consensus 172 ~~~fg~~V~~~~~~~~~-----------~~~~~~~~~~~~~Plt~~~----T~h 210 (210)
+++|||+|++|||.... +++.++|.+++.+|||+ + |+|
T Consensus 135 l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~-~g~~~T~~ 187 (378)
T PRK15438 135 LEALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFK-DGPYKTLH 187 (378)
T ss_pred HHHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCC-Cccccccc
Confidence 99999999999975321 14678999999999999 7 876
No 21
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=3.9e-32 Score=236.13 Aligned_cols=171 Identities=18% Similarity=0.322 Sum_probs=141.2
Q ss_pred ceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCCChhhhcCCceEEEEcC-CCCCHHHHhcCCCceEEEEccccCCccc
Q 028302 13 TRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT-MRLDSNCISRANQMKLIMQFGVGLEGVD 91 (210)
Q Consensus 13 ~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~adv~i~~~-~~~~~~~l~~~p~Lk~i~~~~aG~d~id 91 (210)
|||++..+. ++.+++++.+.++.... ..+...+.++++|+++++. .++++++++ .|+||||++.++|+||+|
T Consensus 1 mkI~~d~~~-----p~~~~~~~~~~~v~~~~-~~~~~~~~l~daD~liv~~~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD 73 (381)
T PRK00257 1 MKIVADENI-----PLLDAFFAGFGEIRRLP-GRAFDRAAVRDADVLLVRSVTRVDRALLE-GSRVRFVGTCTIGTDHLD 73 (381)
T ss_pred CEEEEecCc-----hhHHHHHhhCCcEEEcC-CcccCHHHhCCceEEEEeCCCCCCHHHhc-CCCCeEEEECCccccccC
Confidence 688888765 23355666555444332 1223356789999988753 579999998 589999999999999999
Q ss_pred hhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHH
Q 028302 92 INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR 171 (210)
Q Consensus 92 ~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~ 171 (210)
.+++.++||.|+|+||+ |+.+||||+++++|++.|+ .+.+|.||||||||+|+||+.+|++
T Consensus 74 ~~~~~~~gI~v~napg~---na~aVAE~v~~~lL~l~r~----------------~g~~l~gktvGIIG~G~IG~~va~~ 134 (381)
T PRK00257 74 LDYFAEAGITWSSAPGC---NARGVVDYVLGSLLTLAER----------------EGVDLAERTYGVVGAGHVGGRLVRV 134 (381)
T ss_pred HHHHHHCCCEEEECCCc---ChHHHHHHHHHHHHHHhcc----------------cCCCcCcCEEEEECCCHHHHHHHHH
Confidence 99999999999999998 9999999999999999985 2568999999999999999999999
Q ss_pred hccCCCEEEEEcCCCCC-----------CCcccCceeEEecCCCCCC----CCC
Q 028302 172 LRPFGVKIIATKRSWAS-----------HSQVSCQSSGMLGPLSDGE----THH 210 (210)
Q Consensus 172 ~~~fg~~V~~~~~~~~~-----------~~~~~~~~~~~~~Plt~~~----T~h 210 (210)
+++|||+|++||+.... +++.++|.++..+|+|+ + |+|
T Consensus 135 l~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~-~g~~~T~~ 187 (381)
T PRK00257 135 LRGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTK-EGEHPTRH 187 (381)
T ss_pred HHHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCC-Cccccccc
Confidence 99999999999985321 14578999999999998 5 776
No 22
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=99.97 E-value=1.4e-31 Score=226.71 Aligned_cols=156 Identities=35% Similarity=0.506 Sum_probs=136.4
Q ss_pred hhcCCceEEEE--cCCCCCHHHHhcC-CCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHH
Q 028302 51 DVIANYHLCVV--KTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGL 127 (210)
Q Consensus 51 ~~~~~adv~i~--~~~~~~~~~l~~~-p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~ 127 (210)
+.+....+.+. ....++.+.+... |+||+|.+.|+|+|++|++++++|||+|+|+|+. +..+|||++++++|.+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~---~~~~vAd~~~~lil~~ 132 (336)
T KOG0069|consen 56 KRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDV---LTDDVADLAVSLLLAL 132 (336)
T ss_pred hhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCc---chHHHHHHHHHHHHHH
Confidence 34444444443 2345777777776 8999999999999999999999999999999999 7799999999999999
Q ss_pred HhhHHHHHHHHHhCCCCC----CcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC--------------
Q 028302 128 LRKQNEMRMAIEQKKLGV----PTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------------- 189 (210)
Q Consensus 128 ~R~~~~~~~~~~~~~w~~----~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~-------------- 189 (210)
+|++...+++++++.|.. ..+..+.||||||+|+|+||+++|+||++|||.+.|++|+..+.
T Consensus 133 ~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~ 212 (336)
T KOG0069|consen 133 LRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIE 212 (336)
T ss_pred HhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHH
Confidence 999999999999999942 36689999999999999999999999999999999999976522
Q ss_pred -CcccCceeEEecCCCCCCCCC
Q 028302 190 -SQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 190 -~~~~~~~~~~~~Plt~~~T~h 210 (210)
.+..+|.++..||||+ +|+|
T Consensus 213 ~~~~~sD~ivv~~pLt~-~T~~ 233 (336)
T KOG0069|consen 213 ELLANSDVIVVNCPLTK-ETRH 233 (336)
T ss_pred HHHhhCCEEEEecCCCH-HHHH
Confidence 5789999999999999 9997
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.86 E-value=2.9e-22 Score=158.09 Aligned_cols=89 Identities=36% Similarity=0.495 Sum_probs=78.6
Q ss_pred HHHHHHHHhhHHHHHHHHHhCCC---CCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC--------
Q 028302 121 IYLMLGLLRKQNEMRMAIEQKKL---GVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH-------- 189 (210)
Q Consensus 121 l~~~L~~~R~~~~~~~~~~~~~w---~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~-------- 189 (210)
++++|++.|++..+++.++++.| ....+++++|+||||||+|+||+++|+++++|||+|++|||+.++.
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 58999999999999999999999 5667899999999999999999999999999999999999987632
Q ss_pred -------CcccCceeEEecCCCCCCCCC
Q 028302 190 -------SQVSCQSSGMLGPLSDGETHH 210 (210)
Q Consensus 190 -------~~~~~~~~~~~~Plt~~~T~h 210 (210)
.+.++|.+++.||+|+ +|+|
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~-~T~~ 107 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTP-ETRG 107 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSST-TTTT
T ss_pred eeeehhhhcchhhhhhhhhcccc-ccce
Confidence 5678999999999999 9997
No 24
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.71 E-value=1e-17 Score=125.95 Aligned_cols=98 Identities=24% Similarity=0.407 Sum_probs=76.1
Q ss_pred EEEeCCCCCCchhhHHHHhhc-CCCeEEec-CCCCChhhhcCCceEEEEcCCC-CCHHHHhcCCCceEEEEccccCCccc
Q 028302 15 VLFCGPHFPASHNYTKEYLQN-YPSIQVDV-VPISDVPDVIANYHLCVVKTMR-LDSNCISRANQMKLIMQFGVGLEGVD 91 (210)
Q Consensus 15 ili~~~~~~~~~~~~~~~~~~-~~~v~~~~-~~~~~~~~~~~~adv~i~~~~~-~~~~~l~~~p~Lk~i~~~~aG~d~id 91 (210)
||++.+..++.. +.++. + ++.+.. .+.+++.+.++++|+++++... ++++.++.+|+||||++.|+|+|++|
T Consensus 1 ili~~~~~~~~~----~~l~~~~-~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 75 (133)
T PF00389_consen 1 ILITDPLPDEEI----ERLEEGF-EVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNID 75 (133)
T ss_dssp EEESSS-SHHHH----HHHHHTS-EEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-
T ss_pred eEEeccCCHHHH----HHHHCCc-eEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCccc
Confidence 566765543332 33333 4 666654 2345677889999999987655 99999999999999999999999999
Q ss_pred hhHHhhCCcEEEecCCCCCCCchhHHHHH
Q 028302 92 INAATRCGIKVARIPGDVTGNAASCAELT 120 (210)
Q Consensus 92 ~~~~~~~gi~v~~~~~~~~~~a~~vAE~~ 120 (210)
++++.++||.|+|+||+ ++.+||||+
T Consensus 76 ~~~a~~~gI~V~n~~g~---~~~aVAE~a 101 (133)
T PF00389_consen 76 LEAAKERGIPVTNVPGY---NAEAVAEHA 101 (133)
T ss_dssp HHHHHHTTSEEEE-TTT---THHHHHHHH
T ss_pred HHHHhhCeEEEEEeCCc---CCcchhccc
Confidence 99999999999999999 889999999
No 25
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.68 E-value=2.6e-16 Score=132.88 Aligned_cols=128 Identities=20% Similarity=0.275 Sum_probs=105.0
Q ss_pred hcCCceEEEEcCC-----------------CCCHHHHhcCCCceEEEEccccCCccchh-HHhhCCcEEE------ecCC
Q 028302 52 VIANYHLCVVKTM-----------------RLDSNCISRANQMKLIMQFGVGLEGVDIN-AATRCGIKVA------RIPG 107 (210)
Q Consensus 52 ~~~~adv~i~~~~-----------------~~~~~~l~~~p~Lk~i~~~~aG~d~id~~-~~~~~gi~v~------~~~~ 107 (210)
.+.++|++|.... ++++++++.+| .++...+|+++.|++ .+.++||.|+ |++.
T Consensus 51 ~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~ 127 (287)
T TIGR02853 51 DLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAI 127 (287)
T ss_pred hhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEE
Confidence 3788998886311 25688888888 377788999999988 8899999999 8877
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 108 DVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 108 ~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
+ |+.++||+++++++.. .+.+++|++++|+|+|.||+.+|++|++||++|++++|+..
T Consensus 128 ~---n~~~~Ae~ai~~al~~-------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~ 185 (287)
T TIGR02853 128 Y---NSIPTAEGAIMMAIEH-------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA 185 (287)
T ss_pred E---ccHhHHHHHHHHHHHh-------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 7 8899999999977743 13489999999999999999999999999999999999753
Q ss_pred C------------------CCcccCceeEEecCCC
Q 028302 188 S------------------HSQVSCQSSGMLGPLS 204 (210)
Q Consensus 188 ~------------------~~~~~~~~~~~~~Plt 204 (210)
. +.+.++|.+++.+|++
T Consensus 186 ~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ 220 (287)
T TIGR02853 186 DLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL 220 (287)
T ss_pred HHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH
Confidence 2 1346788888888864
No 26
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.68 E-value=6.4e-17 Score=137.09 Aligned_cols=145 Identities=23% Similarity=0.389 Sum_probs=129.7
Q ss_pred cCCCCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhC
Q 028302 62 KTMRLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQK 141 (210)
Q Consensus 62 ~~~~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~ 141 (210)
.+..++++-+++++.||++...+.|+|++|+.++.+-+|.|||.++. .-+.+|+-++.++|.++|+-....+.++++
T Consensus 81 h~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~---~Ve~~a~stl~hIl~l~rrntw~cq~l~eg 157 (435)
T KOG0067|consen 81 HTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSD---AVEETADSTLCHILNLYRRNTWLCQALREG 157 (435)
T ss_pred eecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccch---hHHHHHHHHHHHHHhhhcccchhhhhhccc
Confidence 34668899999999999999999999999999999999999999998 558999999999999999999999999999
Q ss_pred CCCCC---------cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC---------------CcccCcee
Q 028302 142 KLGVP---------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---------------SQVSCQSS 197 (210)
Q Consensus 142 ~w~~~---------~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~---------------~~~~~~~~ 197 (210)
.|.+. .....+|.++|++|+|.+|++|+.++++||+.|+.||++..+. ++.+++.+
T Consensus 158 ~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~~ 237 (435)
T KOG0067|consen 158 TCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCV 237 (435)
T ss_pred ceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhccce
Confidence 88642 3467889999999999999999999999999999999986533 67888888
Q ss_pred EEecCCCCCCCCC
Q 028302 198 GMLGPLSDGETHH 210 (210)
Q Consensus 198 ~~~~Plt~~~T~h 210 (210)
...|-+.+ .++|
T Consensus 238 S~hc~~~~-~~h~ 249 (435)
T KOG0067|consen 238 SLHCNLNE-HNHE 249 (435)
T ss_pred eeecccCc-cccc
Confidence 88888887 7765
No 27
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.36 E-value=1.3e-11 Score=104.89 Aligned_cols=132 Identities=19% Similarity=0.230 Sum_probs=98.9
Q ss_pred hhcCCceEEEEcCC-----------------CCCHHHHhcCCCceEEEEccccCCccchhHHhhCCcEEEecCCCCC---
Q 028302 51 DVIANYHLCVVKTM-----------------RLDSNCISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT--- 110 (210)
Q Consensus 51 ~~~~~adv~i~~~~-----------------~~~~~~l~~~p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~--- 110 (210)
+.+.++|+++.... .++.+.++.+|++..+. .|.+.++++ +.+.++||.+.+..+...
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~ 128 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAI 128 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhh
Confidence 45788998886421 13678999999997544 588888988 678899999998764300
Q ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC--
Q 028302 111 GNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS-- 188 (210)
Q Consensus 111 ~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~-- 188 (210)
-|+.++||.++...+.. ...++.+++++|+|+|.+|+.+++.|+.+|++|.++||++..
T Consensus 129 ~ns~~~aegav~~a~~~-------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~ 189 (296)
T PRK08306 129 LNSIPTAEGAIMMAIEH-------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLA 189 (296)
T ss_pred hccHhHHHHHHHHHHHh-------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 16788888877654321 135688999999999999999999999999999999998532
Q ss_pred ----------------CCcccCceeEEecCC
Q 028302 189 ----------------HSQVSCQSSGMLGPL 203 (210)
Q Consensus 189 ----------------~~~~~~~~~~~~~Pl 203 (210)
+...++|.+++..|.
T Consensus 190 ~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~ 220 (296)
T PRK08306 190 RITEMGLSPFHLSELAEEVGKIDIIFNTIPA 220 (296)
T ss_pred HHHHcCCeeecHHHHHHHhCCCCEEEECCCh
Confidence 123566777776663
No 28
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.24 E-value=3.1e-11 Score=107.43 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=74.7
Q ss_pred CCceEEE-EccccCCccch-hHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccc
Q 028302 75 NQMKLIM-QFGVGLEGVDI-NAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL 152 (210)
Q Consensus 75 p~Lk~i~-~~~aG~d~id~-~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~ 152 (210)
++++-+. -.++|+..+-. ...-.-+|+|+|++++ +..+++|+++++++++...+ ++.+ +..+.
T Consensus 189 ~~i~G~~EeTttGv~rl~~m~~~g~L~iPV~nv~d~---~tk~~aD~~~G~~~s~~d~~------~R~~------~~~La 253 (476)
T PTZ00075 189 KKIVGVSEETTTGVHRLYKMLKKGELLFPAINVNDS---VTKSKFDNIYGCRHSLIDGI------FRAT------DVMIA 253 (476)
T ss_pred hccEeeeecchHHHHHHHHHHHCCCCCceEEEeCCc---chHHHHHHHHHHHHHHHHHH------HHhc------CCCcC
Confidence 3444333 45777776532 1122358999999999 77999999999999988333 3332 45899
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
|++|||+|+|.||+.+|++|++|||+|+++++.+
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp 287 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDP 287 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 9999999999999999999999999999997653
No 29
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.95 E-value=4.7e-10 Score=95.37 Aligned_cols=60 Identities=33% Similarity=0.439 Sum_probs=50.7
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC---------------CCcccCceeEEecCCCCCCCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS---------------HSQVSCQSSGMLGPLSDGETH 209 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~---------------~~~~~~~~~~~~~Plt~~~T~ 209 (210)
...|+||||||||+|+||+++|++|++|||+|++|++..++ +....+|.+.+++|. + +|+
T Consensus 11 ~~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~-~t~ 85 (335)
T PRK13403 11 VELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-E-QQA 85 (335)
T ss_pred hhhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-h-HHH
Confidence 46799999999999999999999999999999999765332 146679999999997 5 554
No 30
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.26 E-value=2.1e-06 Score=76.25 Aligned_cols=97 Identities=22% Similarity=0.270 Sum_probs=63.1
Q ss_pred CceEE-EEccccCCccc-hhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCccccccc
Q 028302 76 QMKLI-MQFGVGLEGVD-INAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLG 153 (210)
Q Consensus 76 ~Lk~i-~~~~aG~d~id-~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~ 153 (210)
+++-+ =-.++|+..+- .....+.+++|.|++.+.+ .+.-|...+.--+....+.+ .....+.|
T Consensus 148 ~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~---K~~~dn~~gt~~s~~~ai~r------------at~~~l~G 212 (425)
T PRK05476 148 NIKGVTEETTTGVHRLYAMAKDGALKFPAINVNDSVT---KSKFDNRYGTGESLLDGIKR------------ATNVLIAG 212 (425)
T ss_pred ccEeeeecchHHHHHHHHHHHcCCCCCCEEecCCccc---CccccccHHHHhhhHHHHHH------------hccCCCCC
Confidence 43433 34577877753 2222346899999999844 44333222222221111111 11335899
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
++++|+|+|.||+.+|++|++||++|+++|+.+.
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ 246 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI 246 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence 9999999999999999999999999999998754
No 31
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=98.17 E-value=2.1e-06 Score=73.84 Aligned_cols=57 Identities=26% Similarity=0.301 Sum_probs=46.4
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC----------------CcccCceeEEecCCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGMLGPLS 204 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~----------------~~~~~~~~~~~~Plt 204 (210)
...|++++|||||+|++|+++|+.|+.+|++|+++++..... ....+|.+++.+|.+
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~ 84 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDE 84 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHH
Confidence 467899999999999999999999999999999887653211 345678888888854
No 32
>PLN02494 adenosylhomocysteinase
Probab=98.14 E-value=2.4e-06 Score=76.40 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=35.9
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
..+.|++++|+|+|.||+.+|+++++|||+|+++++.+.
T Consensus 250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~ 288 (477)
T PLN02494 250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPI 288 (477)
T ss_pred CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 458899999999999999999999999999999988653
No 33
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.04 E-value=5.7e-06 Score=66.43 Aligned_cols=39 Identities=36% Similarity=0.537 Sum_probs=36.6
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+.+++|++++|+|+|++|+.+|+.|..+|++|+++|++.
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 567999999999999999999999999999999999864
No 34
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.94 E-value=8.1e-06 Score=63.13 Aligned_cols=39 Identities=31% Similarity=0.601 Sum_probs=30.6
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
...+.||++.|+|||.+|+.+|+.|+++|++|+.++..|
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 467999999999999999999999999999999999876
No 35
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.93 E-value=1e-05 Score=71.54 Aligned_cols=38 Identities=34% Similarity=0.516 Sum_probs=35.3
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.|++|+|+|+|.||+.+|+++++||++|+++|+.+
T Consensus 191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 45899999999999999999999999999999998765
No 36
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=97.89 E-value=1.7e-05 Score=68.02 Aligned_cols=53 Identities=32% Similarity=0.355 Sum_probs=40.9
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC----------------CcccCceeEEecCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGMLGPL 203 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~----------------~~~~~~~~~~~~Pl 203 (210)
|+|++|||||+|++|+++|+.|+.+|++|+++++...+. ....+|.+++.+|-
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp 69 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPD 69 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCc
Confidence 579999999999999999999999999988765432111 24557777777773
No 37
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.79 E-value=4.5e-05 Score=67.59 Aligned_cols=40 Identities=28% Similarity=0.488 Sum_probs=36.5
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
+..+.|++|+|+|+|.||+.+|++++++|++|+++|+.+.
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~ 236 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI 236 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence 4568999999999999999999999999999999988653
No 38
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.78 E-value=1e-05 Score=62.69 Aligned_cols=51 Identities=20% Similarity=0.281 Sum_probs=38.4
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC----------------CCcccCceeEEecCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS----------------HSQVSCQSSGMLGPLS 204 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~----------------~~~~~~~~~~~~~Plt 204 (210)
++||+||+|++|+.+|+.|..-|.+|.+|||++.. +....+|.++..+|-.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~ 68 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDD 68 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccc
Confidence 68999999999999999999999999999998521 1344557777777754
No 39
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.70 E-value=5.9e-05 Score=64.36 Aligned_cols=52 Identities=21% Similarity=0.125 Sum_probs=44.1
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC---CcccCceeEEecCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH---SQVSCQSSGMLGPL 203 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~---~~~~~~~~~~~~Pl 203 (210)
.+++|||||+|++|+.+|+.+...|.+|..|+|+.... ....+|.++..+|.
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVSM 57 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECCh
Confidence 45789999999999999999999999999999976544 34567888888875
No 40
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.69 E-value=2.8e-05 Score=69.11 Aligned_cols=58 Identities=26% Similarity=0.285 Sum_probs=42.3
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC------CCC---------------CCcccCceeEEecCCCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS------WAS---------------HSQVSCQSSGMLGPLSD 205 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~------~~~---------------~~~~~~~~~~~~~Plt~ 205 (210)
...|+||||+|||+|+||++-|.-++..|.+|++--|. .++ +..+.+|.+++++|.|.
T Consensus 31 ~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt~ 109 (487)
T PRK05225 31 ASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQ 109 (487)
T ss_pred hHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChHH
Confidence 47899999999999999996666666666666621111 111 14788999999999874
No 41
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=97.45 E-value=0.0001 Score=56.93 Aligned_cols=52 Identities=31% Similarity=0.439 Sum_probs=38.5
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC----------------CcccCceeEEecC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGMLGP 202 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~----------------~~~~~~~~~~~~P 202 (210)
|++|||.|||||+-|.+.|.-||.-|++|++-.|..++. ....+|.+.+++|
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCC
Confidence 689999999999999999999999999999887765421 3566777777776
No 42
>PLN02712 arogenate dehydrogenase
Probab=97.44 E-value=0.00014 Score=68.29 Aligned_cols=39 Identities=33% Similarity=0.349 Sum_probs=36.0
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+.++.+++|||||+|.||+.+|+.++.+|.+|++||++.
T Consensus 364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~ 402 (667)
T PLN02712 364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSD 402 (667)
T ss_pred cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECCh
Confidence 467789999999999999999999999999999999874
No 43
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.36 E-value=0.00044 Score=56.62 Aligned_cols=37 Identities=41% Similarity=0.583 Sum_probs=33.9
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.++.+++|.|.|||++|+.+|++|..+|++|+++..+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~ 63 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDS 63 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 6789999999999999999999999999999976544
No 44
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.30 E-value=0.0047 Score=54.18 Aligned_cols=127 Identities=13% Similarity=0.001 Sum_probs=69.5
Q ss_pred CceEEEEcCCCCCHHHHhcC-CCceEEEEccccCCccchhHHhhCCcEEEecCCCCC-----CCchhHHHHHHHHHHHHH
Q 028302 55 NYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVT-----GNAASCAELTIYLMLGLL 128 (210)
Q Consensus 55 ~adv~i~~~~~~~~~~l~~~-p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~~-----~~a~~vAE~~l~~~L~~~ 128 (210)
++|+++--.. +..+.++.+ ++--++.......+....+.+.++++.....-.... .--.++|+.+=.......
T Consensus 66 ~~dii~~Vk~-p~~~~~~~~~~g~~l~~~~~~a~~~~~~~~l~~~~~t~i~~e~i~~~~~~~~~l~~~~~iaG~~av~~a 144 (370)
T TIGR00518 66 DAELVLKVKE-PLPEEYGYLRHGQILFTYLHLAAERALTDALLDSGTTAIAYETVQTADGALPLLAPMSEVAGRLAAQVG 144 (370)
T ss_pred cCCEEEEeCC-CCHHHHhhcCCCcEEEEEeccCCCHHHHHHHHHcCCeEEEeeeeeccCCCCccccchhHHHHHHHHHHH
Confidence 4888874333 344445554 455555555554565556677777776654222100 000123333222111111
Q ss_pred -hhHHHHHHHHHhCCCC-CCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 129 -RKQNEMRMAIEQKKLG-VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 129 -R~~~~~~~~~~~~~w~-~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.. .. .|+-. ......+.+.+|.|+|.|.+|+.+++.++.+|++|.++|++.
T Consensus 145 a~~~~~---~~-~g~~~~~~~~~~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 145 AYHLEK---TQ-GGRGVLLGGVPGVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred HHHhHh---hc-CCcceeecCCCCCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 11111 10 01100 011234678899999999999999999999999999999863
No 45
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.24 E-value=0.0011 Score=58.12 Aligned_cols=53 Identities=19% Similarity=0.133 Sum_probs=43.0
Q ss_pred ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCCC---CcccCceeEEecCCC
Q 028302 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWASH---SQVSCQSSGMLGPLS 204 (210)
Q Consensus 152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~~---~~~~~~~~~~~~Plt 204 (210)
..++|+||| +|.+|+.+|+.++.-|.+|.+||+..... ....+|.++..+|..
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~~~~~~~~~~aDlVilavP~~ 153 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDWDRAEDILADAGMVIVSVPIH 153 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcchhHHHHHhcCCEEEEeCcHH
Confidence 558999999 99999999999999999999999864322 345677777777743
No 46
>PLN02256 arogenate dehydrogenase
Probab=97.21 E-value=0.00043 Score=59.11 Aligned_cols=36 Identities=39% Similarity=0.427 Sum_probs=33.0
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
-++++|||||+|.||+.+|+.++.+|.+|++||++.
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 356799999999999999999999999999999874
No 47
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.20 E-value=0.0011 Score=55.22 Aligned_cols=37 Identities=38% Similarity=0.525 Sum_probs=34.0
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~ 184 (210)
+.++.|+||.|-|||++|+.+|+.|..+|++|++++.
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4689999999999999999999999999999996654
No 48
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.08 E-value=0.0013 Score=53.56 Aligned_cols=36 Identities=42% Similarity=0.613 Sum_probs=32.4
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~ 184 (210)
.+|.|+||.|.|||++|+.+|+.|...|.+|++++.
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD 54 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSD 54 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEc
Confidence 578999999999999999999999999998777543
No 49
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.06 E-value=0.0017 Score=44.76 Aligned_cols=36 Identities=42% Similarity=0.642 Sum_probs=33.2
Q ss_pred cccccCeEEEEecChHHHHHHHHhccC-CCEEEEEcC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPF-GVKIIATKR 184 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~f-g~~V~~~~~ 184 (210)
..+.+++++|+|.|.+|+.+++.+..+ +.+|..|||
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 568999999999999999999999988 678999988
No 50
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.95 E-value=0.00072 Score=47.26 Aligned_cols=33 Identities=36% Similarity=0.521 Sum_probs=29.3
Q ss_pred eEEEEecChHHHHHHHHhccCC---CEEE-EEcCCCC
Q 028302 155 TVFILGFGNIGVELAKRLRPFG---VKII-ATKRSWA 187 (210)
Q Consensus 155 tvGIiG~G~IG~~vA~~~~~fg---~~V~-~~~~~~~ 187 (210)
||||||+|++|+++++.+..-| .+|. +++|++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH
Confidence 6999999999999999999999 9999 4488753
No 51
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.92 E-value=0.0021 Score=57.62 Aligned_cols=35 Identities=26% Similarity=0.596 Sum_probs=33.3
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEE
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIAT 182 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~ 182 (210)
+.++.|+||.|.|||++|+.+|+.|..+|++|+++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVav 261 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTC 261 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 46799999999999999999999999999999998
No 52
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.91 E-value=0.002 Score=56.50 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=41.7
Q ss_pred cccCeEEEEec-ChHHHHHHHHhcc-CCCEEEEEcCCCCC-----CCcccCceeEEecCC
Q 028302 151 LLGKTVFILGF-GNIGVELAKRLRP-FGVKIIATKRSWAS-----HSQVSCQSSGMLGPL 203 (210)
Q Consensus 151 l~~~tvGIiG~-G~IG~~vA~~~~~-fg~~V~~~~~~~~~-----~~~~~~~~~~~~~Pl 203 (210)
+...||+|||+ |-||+.+|+.++. ++.+|++||+.-.. +....+|.++...|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~~~~~~~~v~~aDlVilavPv 61 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPGSLDPATLLQRADVLIFSAPI 61 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccccCCHHHHhcCCCEEEEeCCH
Confidence 34679999999 9999999999994 69999999984321 135567877777774
No 53
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.85 E-value=0.0012 Score=49.59 Aligned_cols=38 Identities=32% Similarity=0.478 Sum_probs=35.6
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~ 186 (210)
.+++++++.|||.|.+|+.++..|...|++ |..++|+.
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 479999999999999999999999999997 99999975
No 54
>PLN02712 arogenate dehydrogenase
Probab=96.80 E-value=0.0017 Score=61.19 Aligned_cols=39 Identities=36% Similarity=0.489 Sum_probs=34.2
Q ss_pred cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 147 ~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
....-+.++|||||+|.||+.+|+.++.+|.+|.+||++
T Consensus 46 ~~~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 46 NPDNTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred CCccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 334455679999999999999999999999999999986
No 55
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.78 E-value=0.014 Score=53.26 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=74.4
Q ss_pred CceEEEEcCCCCCHHHHhcCC-CceEEEEccccCCccchhHHhhCCcEEEecCCCC--C-----CCchhHHHHHHHHHHH
Q 028302 55 NYHLCVVKTMRLDSNCISRAN-QMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV--T-----GNAASCAELTIYLMLG 126 (210)
Q Consensus 55 ~adv~i~~~~~~~~~~l~~~p-~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~--~-----~~a~~vAE~~l~~~L~ 126 (210)
++|+++-- .+++.+.++.++ +--+|....-..|.=.++.+.+++|.+...-... + .-=.++|+.+=
T Consensus 65 ~~diilkV-~~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG----- 138 (509)
T PRK09424 65 QSDIILKV-NAPSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG----- 138 (509)
T ss_pred cCCEEEEe-CCCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH-----
Confidence 58888853 334555577774 5666666666556556667788998887632210 0 00123333322
Q ss_pred HHhhHHHHHHHHHhCCCCCC---cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 127 LLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 127 ~~R~~~~~~~~~~~~~w~~~---~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+|-+....+.. ++.... ......+.+|.|+|.|.||...++.++.+|++|+++|+++
T Consensus 139 -y~Av~~aa~~~--~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 139 -YRAVIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred -HHHHHHHHHHh--cccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 22222211111 111110 1124569999999999999999999999999999999875
No 56
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.77 E-value=0.0034 Score=56.15 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=34.4
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~ 184 (210)
+.+|.|+||.|.|+|++|+..|+.|..+|++|++++.
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 4579999999999999999999999999999999665
No 57
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.75 E-value=0.025 Score=51.63 Aligned_cols=125 Identities=10% Similarity=0.067 Sum_probs=73.6
Q ss_pred CceEEEEcCCCCCHHHHhcC-CCceEEEEccccCCccchhHHhhCCcEEEecCCCC--C-----CCchhHHHHHHHHH-H
Q 028302 55 NYHLCVVKTMRLDSNCISRA-NQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDV--T-----GNAASCAELTIYLM-L 125 (210)
Q Consensus 55 ~adv~i~~~~~~~~~~l~~~-p~Lk~i~~~~aG~d~id~~~~~~~gi~v~~~~~~~--~-----~~a~~vAE~~l~~~-L 125 (210)
++|+++-- .+++.+.++.+ ++--+|....-..|.=.++.+.+++|.+...-..- + .-=.++|+.+=+.. +
T Consensus 64 ~adiIlkV-~~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Avi 142 (511)
T TIGR00561 64 QSDIILKV-NAPSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAII 142 (511)
T ss_pred cCCEEEEe-CCCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHHH
Confidence 57888743 33455557776 46666666665555555667788998887633110 1 00123333332111 1
Q ss_pred HHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 126 GLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 126 ~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+..+.++ + .|.-. .. ..+.+.++.|+|.|.+|...++.++.+|++|+++|++.
T Consensus 143 ~Aa~~lgr~---~-~g~~t-aa-g~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 143 EAAHEFGRF---F-TGQIT-AA-GKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred HHHHHhhhh---c-CCcee-cC-CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 111111111 0 11111 11 24557899999999999999999999999999999875
No 58
>PLN02477 glutamate dehydrogenase
Probab=96.72 E-value=0.0038 Score=55.43 Aligned_cols=37 Identities=38% Similarity=0.617 Sum_probs=33.7
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~ 184 (210)
+.+|.|+||.|.|||++|+.+|+.|...|++|++++.
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD 237 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSD 237 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEC
Confidence 4589999999999999999999999999999996543
No 59
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.71 E-value=0.0018 Score=54.79 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=31.1
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++|||||.|.+|..+|+.+...|++|+.||++.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 689999999999999999999999999999865
No 60
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.70 E-value=0.0029 Score=53.84 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=46.3
Q ss_pred ccccccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecCC
Q 028302 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGPL 203 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~Pl 203 (210)
+.++.||+|+|||.| .+|+.+|.+|..-|++|..|+++.+. +...++|.++..++-
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~ADIVIsavg~ 212 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQADIVVAAVGR 212 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhcCCEEEEecCC
Confidence 568999999999996 99999999999999999999875432 345677877777654
No 61
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.69 E-value=0.0016 Score=55.45 Aligned_cols=35 Identities=26% Similarity=0.408 Sum_probs=33.8
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.|+.+||+|+|.+|.--.+.+||||++|+++|++.
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~ 215 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSS 215 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCc
Confidence 79999999999999999999999999999999986
No 62
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.68 E-value=0.0027 Score=49.59 Aligned_cols=54 Identities=20% Similarity=0.153 Sum_probs=44.6
Q ss_pred cccccCeEEEEecChH-HHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecC
Q 028302 149 ETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGP 202 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~I-G~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~P 202 (210)
.++.|+++.|||.|.+ |+.+|+.|...|++|...+|+.+. +.+.++|.++..-+
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l~~aDiVIsat~ 96 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTKQADIVIVAVG 96 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHHhhCCEEEEcCC
Confidence 5799999999999995 999999999999999999987543 35677777776643
No 63
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=96.62 E-value=0.0022 Score=55.47 Aligned_cols=38 Identities=37% Similarity=0.596 Sum_probs=34.8
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
--+.||++.|.|||..|+-+|.+++++|++|+++.-.|
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDP 242 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDP 242 (420)
T ss_pred eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCc
Confidence 45789999999999999999999999999999987655
No 64
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=96.61 E-value=0.0037 Score=53.25 Aligned_cols=35 Identities=37% Similarity=0.624 Sum_probs=30.7
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCC--EEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~--~V~~~~~~~ 186 (210)
..++|+|||+|.||..+|+.++..|. +|++||++.
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 34789999999999999999997774 899999874
No 65
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.56 E-value=0.0038 Score=52.72 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=46.9
Q ss_pred ccccccCeEEEEecChH-HHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecC
Q 028302 148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGP 202 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~I-G~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~P 202 (210)
+.++.||++.|||.|.+ |+.+|.+|...|++|..++.+.+. +...++|.++...|
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~~l~~~~~~ADIVV~avG 210 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTRDLAAHTRQADIVVAAVG 210 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCCCHHHHhhhCCEEEEcCC
Confidence 46899999999999999 999999999999999988764432 36788888888776
No 66
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.55 E-value=0.0024 Score=54.95 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=31.8
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
++|||||.|.+|..+|..+...|++|+.||+++.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 6899999999999999999999999999999753
No 67
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=96.52 E-value=0.0024 Score=53.91 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=47.0
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC----------------CCcccCceeEEecCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS----------------HSQVSCQSSGMLGPLS 204 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~----------------~~~~~~~~~~~~~Plt 204 (210)
...+.++||.||+|+.|..++.-|-.-|.+|++|||+.+. ++...+|+++..+|..
T Consensus 31 ~~~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~ 102 (327)
T KOG0409|consen 31 ITPSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNP 102 (327)
T ss_pred CCcccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCCh
Confidence 4457899999999999999999999999999999997532 2567788888887754
No 68
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.52 E-value=0.00086 Score=53.88 Aligned_cols=44 Identities=30% Similarity=0.459 Sum_probs=39.1
Q ss_pred CCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 142 ~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
.|.......|.+++|.|+|.|.+|..+|+.|...|+ ++..+|+.
T Consensus 10 ~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 10 DIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 466555678999999999999999999999999998 89999975
No 69
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.52 E-value=0.0055 Score=43.76 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=32.7
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.++|++|.|||.|.+|.+-++.|...|++|+.+++..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 6899999999999999999999999999999999873
No 70
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.50 E-value=0.0035 Score=56.38 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=34.7
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.+++|+|+|+|..|+.+|+.|+..|++|.++|+..
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 44678999999999999999999999999999999764
No 71
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.49 E-value=0.0072 Score=54.11 Aligned_cols=34 Identities=38% Similarity=0.637 Sum_probs=32.5
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEE
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIA 181 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~ 181 (210)
+.+|.|+||.|=|||++|+..|+.|..+|++|++
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVa 256 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVT 256 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 4579999999999999999999999999999999
No 72
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.49 E-value=0.0037 Score=47.36 Aligned_cols=37 Identities=38% Similarity=0.568 Sum_probs=33.0
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCC-CEEEEEcCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg-~~V~~~~~~~ 186 (210)
.+.+++++|+|.|.+|+.+++.+...| .+|..+||+.
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 467899999999999999999999886 7899999864
No 73
>PLN02858 fructose-bisphosphate aldolase
Probab=96.48 E-value=0.0013 Score=66.48 Aligned_cols=53 Identities=11% Similarity=0.092 Sum_probs=43.1
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC----------------CCcccCceeEEecCCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS----------------HSQVSCQSSGMLGPLSD 205 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~----------------~~~~~~~~~~~~~Plt~ 205 (210)
.++||+||+|++|..+|+.|...|.+|.+||+++.. +....+|.++..+|..+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~ 392 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEV 392 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChH
Confidence 489999999999999999999999999999987532 13456777777777544
No 74
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.39 E-value=0.0056 Score=51.85 Aligned_cols=53 Identities=32% Similarity=0.412 Sum_probs=43.4
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC----------------CcccCceeEEecC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGMLGP 202 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~----------------~~~~~~~~~~~~P 202 (210)
-|.||||+|||||+-|.+=|.-||.-|.+|++=-|..+.. ..+.+|.+.+++|
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~P 83 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLP 83 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCc
Confidence 6899999999999999999999999999987655544331 4677777777777
No 75
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=96.36 E-value=0.006 Score=51.48 Aligned_cols=34 Identities=35% Similarity=0.507 Sum_probs=28.2
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEE--EEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKI--IATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V--~~~~~~~ 186 (210)
.++|+|+|+|.||+.+|+.++.-|..| +++|++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~ 38 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSA 38 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcH
Confidence 478999999999999999999777766 5666553
No 76
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.34 E-value=0.0035 Score=51.92 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 133 ~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
+|.++..-..|.......|++++|+|+|.|.+|..+|+.|...|. ++..+|..
T Consensus 12 rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 12 RYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 444444334576556678999999999999999999999998898 78888864
No 77
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.34 E-value=0.0042 Score=55.37 Aligned_cols=38 Identities=34% Similarity=0.588 Sum_probs=34.8
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCC-CEEEEEcCCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg-~~V~~~~~~~~ 187 (210)
.+.+++|+|+|.|.+|+.+++.|+.+| .+|+.++|+..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ 215 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYE 215 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence 588999999999999999999999999 68999999753
No 78
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.29 E-value=0.0014 Score=53.53 Aligned_cols=44 Identities=27% Similarity=0.410 Sum_probs=38.1
Q ss_pred CCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 142 ~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
.|.......|.+++|.|+|+|.+|.++|+.|...|+ ++..+|..
T Consensus 10 ~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 10 EIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred hcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 465555678999999999999999999999999999 68888864
No 79
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=96.24 E-value=0.0043 Score=55.01 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=28.2
Q ss_pred CeEEEEecChHHHHHHHHhcc-CCCEEEEE-cCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRP-FGVKIIAT-KRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~-fg~~V~~~-~~~~ 186 (210)
.+|||.|||+|||.++|.+.. ++++|++. |+..
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~ 120 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFI 120 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCC
Confidence 599999999999999999884 89999984 4443
No 80
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.22 E-value=0.003 Score=50.55 Aligned_cols=43 Identities=21% Similarity=0.440 Sum_probs=38.5
Q ss_pred CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
|.......|.+++|.|+|+|.+|.++++.|...|+ ++..+|+.
T Consensus 11 ~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 11 WGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred hCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 76666788999999999999999999999999999 58888865
No 81
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.22 E-value=0.0053 Score=51.86 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=31.1
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++|+|||.|.+|..+|..+...|.+|+.||++.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 689999999999999999999999999999875
No 82
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.21 E-value=0.0067 Score=51.33 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=46.0
Q ss_pred ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecC
Q 028302 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGP 202 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~P 202 (210)
+.++.||++.|||.|. +|+.+|.+|...|++|..++++.+. +...++|.++...+
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVIsAvg 210 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSKDMASYLKDADVIVSAVG 210 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchhHHHHHhhCCEEEECCC
Confidence 4579999999999999 9999999999999999998875432 35677887777654
No 83
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.07 E-value=0.0084 Score=48.47 Aligned_cols=58 Identities=21% Similarity=0.210 Sum_probs=44.0
Q ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHH--hccCCCEEEE-EcCC
Q 028302 112 NAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKR--LRPFGVKIIA-TKRS 185 (210)
Q Consensus 112 ~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~--~~~fg~~V~~-~~~~ 185 (210)
.+.+.++|.+..++...|++.. .. ..++++|+|+|++|+.+++. ....|+++.+ +|+.
T Consensus 59 ~G~~~~gy~v~~l~~~~~~~l~---------------~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 59 FGKRGVGYNVEELLEFIEKILG---------------LD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred cCCCCCCeeHHHHHHHHHHHhC---------------CC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 3456677889999998888852 11 34689999999999999986 3478999886 5553
No 84
>PLN02858 fructose-bisphosphate aldolase
Probab=96.04 E-value=0.0039 Score=63.16 Aligned_cols=54 Identities=20% Similarity=0.145 Sum_probs=43.1
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC----------------CcccCceeEEecCCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH----------------SQVSCQSSGMLGPLSD 205 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~----------------~~~~~~~~~~~~Plt~ 205 (210)
+.++||+||+|.+|..+|+.|..-|.+|.+|||++... ....+|.++..+|-.+
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~ 72 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPD 72 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChH
Confidence 46789999999999999999999999999999975321 3345677777777654
No 85
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.03 E-value=0.0051 Score=53.36 Aligned_cols=45 Identities=27% Similarity=0.459 Sum_probs=39.2
Q ss_pred CCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 142 ~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
.|.......|++++|.|||.|.+|..+|+.|...|. ++..+|+..
T Consensus 13 ~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 13 GIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 455556678999999999999999999999999998 788899853
No 86
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.00 E-value=0.011 Score=45.70 Aligned_cols=41 Identities=24% Similarity=0.227 Sum_probs=36.5
Q ss_pred cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 147 ~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
..-+|+|++|.|||-|.+|...++.|...|++|..+++...
T Consensus 7 ~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~ 47 (157)
T PRK06719 7 LMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEIC 47 (157)
T ss_pred eEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccC
Confidence 34689999999999999999999999999999999986543
No 87
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=95.99 E-value=0.006 Score=55.46 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=31.0
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+||+||+|..|+.+|+.+..-|.+|.+|||++
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~ 39 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 39 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCH
Confidence 469999999999999999999999999999974
No 88
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.97 E-value=0.0082 Score=51.13 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=30.5
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++|+|||.|.+|..+|..+...|.+|+.||++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 689999999999999999999999999999754
No 89
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.95 E-value=0.011 Score=50.20 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=46.5
Q ss_pred ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEc-CCCCC-CCcccCceeEEecCCC
Q 028302 148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATK-RSWAS-HSQVSCQSSGMLGPLS 204 (210)
Q Consensus 148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~-~~~~~-~~~~~~~~~~~~~Plt 204 (210)
+.++.||+|+||| .|.+|+.+|.+|..-|++|..|+ |+... +...++|.++..++-.
T Consensus 153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l~e~~~~ADIVIsavg~~ 212 (296)
T PRK14188 153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDLPAVCRRADILVAAVGRP 212 (296)
T ss_pred CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCHHHHHhcCCEEEEecCCh
Confidence 3579999999999 99999999999999999999995 66432 3456778777776643
No 90
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.94 E-value=0.0085 Score=53.48 Aligned_cols=37 Identities=41% Similarity=0.636 Sum_probs=34.2
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
.+.+++|+|+|.|.+|+.+++.++..|+ +|+.++|++
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 4789999999999999999999999998 799999975
No 91
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.92 E-value=0.0096 Score=50.03 Aligned_cols=36 Identities=28% Similarity=0.315 Sum_probs=29.4
Q ss_pred cccCeEEEEecChHHHHHHHHhcc--CCCEEE-EEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRP--FGVKII-ATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~--fg~~V~-~~~~~~ 186 (210)
....+|||||+|.||+.+++.+.. .++++. .+|+.+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~ 42 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDP 42 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCH
Confidence 345799999999999999999885 588877 567653
No 92
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.91 E-value=0.011 Score=49.83 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=35.0
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCC-CEEEEEcCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg-~~V~~~~~~~ 186 (210)
..+.++++.|+|.|.+|++++..|+.+| .+|..++|+.
T Consensus 119 ~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 119 VDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4688999999999999999999999999 6899999974
No 93
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.91 E-value=0.021 Score=51.22 Aligned_cols=37 Identities=30% Similarity=0.525 Sum_probs=33.9
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKR 184 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~ 184 (210)
+.+|.|+||.|=|+|++|+..|++|..+|++|++++.
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD 268 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSD 268 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 4679999999999999999999999999999996554
No 94
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=95.91 E-value=0.025 Score=46.85 Aligned_cols=35 Identities=43% Similarity=0.722 Sum_probs=32.7
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEc
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~ 183 (210)
.++.|+|+.|-|||++|+.+|+.|...|++|++++
T Consensus 28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vs 62 (244)
T PF00208_consen 28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVS 62 (244)
T ss_dssp HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEe
Confidence 46999999999999999999999999999999873
No 95
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.90 E-value=0.0091 Score=50.44 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=31.0
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++|+|||.|.+|..+|..+..-|.+|+.||++.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 689999999999999999999999999999864
No 96
>PRK08328 hypothetical protein; Provisional
Probab=95.88 E-value=0.0088 Score=49.04 Aligned_cols=43 Identities=30% Similarity=0.479 Sum_probs=37.6
Q ss_pred CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
|.......|.+++|.|+|.|.+|..+|+.|...|. ++..+|..
T Consensus 17 ~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 17 FGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred cCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 66555678999999999999999999999999998 58888864
No 97
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.87 E-value=0.012 Score=47.39 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=36.2
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.-+|.|++|.|||.|.+|...++.|...|++|..+++...
T Consensus 5 ~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~ 44 (202)
T PRK06718 5 MIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELT 44 (202)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 3579999999999999999999999999999999998653
No 98
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.86 E-value=0.0075 Score=53.73 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=31.6
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
++|+|||+|.+|..+|..|...|.+|++||+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 6899999999999999999999999999998753
No 99
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.85 E-value=0.0048 Score=45.99 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=28.3
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEE-cCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIAT-KRS 185 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~-~~~ 185 (210)
-...+|||||.|++|+.+++.|+.-|..|.++ +|+
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34579999999999999999999999999875 454
No 100
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.82 E-value=0.011 Score=50.87 Aligned_cols=34 Identities=32% Similarity=0.304 Sum_probs=31.2
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+|+|||.|.+|..+|..|..-|.+|..|+|++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3589999999999999999999999999999964
No 101
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.79 E-value=0.0094 Score=54.31 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=31.3
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
++|||||.|.+|..+|..+..-|.+|+.||+++.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~ 38 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPE 38 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5899999999999999999989999999998753
No 102
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.76 E-value=0.01 Score=50.22 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=31.6
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
++|||||.|.+|..+|..+...|.+|+.||+++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4899999999999999999999999999999764
No 103
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.75 E-value=0.0091 Score=50.17 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=30.4
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++|+|||.|.+|..+|..+...|.+|+.||+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 579999999999999999999999999999654
No 104
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.75 E-value=0.015 Score=51.80 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=32.0
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.++|.|||+|.+|..+|+.|+..|.+|.++|++..
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~ 37 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLE 37 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 47899999999999999999999999999998643
No 105
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.73 E-value=0.0076 Score=52.31 Aligned_cols=44 Identities=32% Similarity=0.459 Sum_probs=38.9
Q ss_pred CCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 142 ~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
.|.......|..++|.|||.|.+|..+|+.|...|. +|..+|..
T Consensus 13 ~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 13 PIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred hcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 465555678999999999999999999999999999 89999985
No 106
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.72 E-value=0.011 Score=50.67 Aligned_cols=37 Identities=35% Similarity=0.603 Sum_probs=32.9
Q ss_pred cccCeEEEEecChHHHHHHHHhccCC-CEEEEEcCCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWA 187 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg-~~V~~~~~~~~ 187 (210)
+.+++|+|+|.|.||+.+++.++..| .+|+.++|+..
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ 213 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYE 213 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 78999999999999999999999876 47889999753
No 107
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.72 E-value=0.013 Score=47.30 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=36.7
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~ 188 (210)
-++.|++|.|||-|.+|..-++.|..+|++|..+++...+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~ 44 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELES 44 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCH
Confidence 4689999999999999999999999999999999987653
No 108
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.69 E-value=0.0097 Score=51.44 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=34.2
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~ 188 (210)
|++|+|+|+|.+|--..+.++++|++|+++|++.++
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K 202 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEK 202 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence 899999999999999999999999999999998764
No 109
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.68 E-value=0.015 Score=48.93 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=30.1
Q ss_pred ccCeEEEEecChHHHHHHHHhccCC----CEEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg----~~V~~~~~~~ 186 (210)
...+|||||+|++|+.+|+.+..-| .+|++++|+.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~ 40 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSN 40 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCC
Confidence 3568999999999999999988666 6899999864
No 110
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.66 E-value=0.054 Score=42.87 Aligned_cols=39 Identities=33% Similarity=0.503 Sum_probs=34.8
Q ss_pred ccccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+..++++++.|+|. |.+|+.+++.+...|.+|..++|+.
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 45688999999995 9999999999999999999999864
No 111
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.66 E-value=0.01 Score=44.75 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=27.8
Q ss_pred EEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 156 VFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 156 vGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
+-|+|.|++++++++.++.+|++|..+|+++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 46999999999999999999999999998754
No 112
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=95.64 E-value=0.013 Score=44.95 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=27.7
Q ss_pred eEEEEecChHHHHHHHHhc-cCCCEEEEEcCCC
Q 028302 155 TVFILGFGNIGVELAKRLR-PFGVKIIATKRSW 186 (210)
Q Consensus 155 tvGIiG~G~IG~~vA~~~~-~fg~~V~~~~~~~ 186 (210)
+|||-|||+|||.++|.+. .-+++|.+++...
T Consensus 2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~ 34 (151)
T PF00044_consen 2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPA 34 (151)
T ss_dssp EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS
T ss_pred EEEEECCCcccHHHHHhhcccceEEEEEEeccc
Confidence 7999999999999999987 7788988876543
No 113
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.61 E-value=0.018 Score=51.42 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=33.7
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+.|+++.|+|.|.+|..+|+.|+..|++|.++|+..
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 678999999999999999999999999999999754
No 114
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=95.53 E-value=0.017 Score=52.35 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=35.5
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+.++.+++++|+|.|.+|++++..+..+|++|..++|+.
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~ 365 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTK 365 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 356789999999999999999999999999999999864
No 115
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=95.50 E-value=0.019 Score=50.69 Aligned_cols=39 Identities=36% Similarity=0.605 Sum_probs=35.3
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
..+.|+||.|=|+|++|+..|+.+...|.+|+++|.+..
T Consensus 203 ~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g 241 (411)
T COG0334 203 DDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG 241 (411)
T ss_pred CCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 459999999999999999999999999999999987543
No 116
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.46 E-value=0.017 Score=48.72 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=30.8
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++|+|||.|.+|..+|..+..-|.+|+.||++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 589999999999999999998899999999864
No 117
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.42 E-value=0.011 Score=51.66 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=42.0
Q ss_pred HHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 134 MRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 134 ~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
|.+++.-..|.......|++++|.|+|.|.+|..+|+.|...|. ++..+|..
T Consensus 9 Y~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 9 YRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred hhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 34444434566656678999999999999999999999999999 68888874
No 118
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.41 E-value=0.02 Score=51.24 Aligned_cols=37 Identities=41% Similarity=0.602 Sum_probs=34.6
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.+|++.|+|.|.+|.++|+.|...|.+|.++|+..
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3679999999999999999999999999999999875
No 119
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.41 E-value=0.02 Score=51.47 Aligned_cols=37 Identities=32% Similarity=0.458 Sum_probs=34.2
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.+++|.|+|+|.+|..+|+.|+..|.+|.++|...
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~ 42 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNP 42 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCCh
Confidence 4778999999999999999999999999999999753
No 120
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.40 E-value=0.019 Score=46.06 Aligned_cols=38 Identities=32% Similarity=0.424 Sum_probs=35.1
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
...|..++|+|+|.|.+|..+|..|...|. ++..+|+.
T Consensus 16 q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 16 VQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 467999999999999999999999999999 69999986
No 121
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=95.40 E-value=0.014 Score=43.48 Aligned_cols=34 Identities=41% Similarity=0.594 Sum_probs=30.2
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
++++|.|+|+|.+|.++|+.|...|+ ++..+|+.
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 46899999999999999999999999 79999975
No 122
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.37 E-value=0.022 Score=51.55 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=32.9
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
+.|++++|+|+|.-|+.+|+.|+..|++|+.+|..
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~ 40 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFC 40 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence 56899999999999999999999999999999954
No 123
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=95.33 E-value=0.029 Score=46.68 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=28.5
Q ss_pred cCeEEEEecChHHHHHHHHhccCC----CEEEEEcCCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFG----VKIIATKRSWA 187 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg----~~V~~~~~~~~ 187 (210)
..+|||||+|++|+.+++.+..-+ -+|++++|+..
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~ 41 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKK 41 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChh
Confidence 468999999999999999988544 25999988643
No 124
>PLN00203 glutamyl-tRNA reductase
Probab=95.32 E-value=0.02 Score=52.47 Aligned_cols=37 Identities=30% Similarity=0.467 Sum_probs=34.2
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
++.+++|+|||.|.+|+.+++.|...|+ +|+.++|+.
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~ 300 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSE 300 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 4889999999999999999999999998 699999975
No 125
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.32 E-value=0.017 Score=55.10 Aligned_cols=33 Identities=36% Similarity=0.562 Sum_probs=30.1
Q ss_pred CeEEEEecChHHHHHHHHhccCC--CEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFG--VKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg--~~V~~~~~~~ 186 (210)
++|||||+|.+|..+|+.++..| .+|++||++.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~ 38 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRA 38 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECCh
Confidence 78999999999999999999877 5899999874
No 126
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.31 E-value=0.023 Score=51.67 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=33.7
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++.+++|.|+|+|.+|..+|+.|+..|.+|.++|...
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 3568899999999999999999999999999999643
No 127
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.30 E-value=0.022 Score=51.79 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=32.8
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
+.|+++.|+|+|.+|...++.|+..|++|+++|+.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46899999999999999999999999999999965
No 128
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.29 E-value=0.032 Score=47.19 Aligned_cols=55 Identities=13% Similarity=0.038 Sum_probs=45.7
Q ss_pred ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecC
Q 028302 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGP 202 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~P 202 (210)
+.++.||++.|+|.|. .|+.+|..|...|++|..+++..+. +....+|.+++..+
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~~L~~~~~~aDIvI~AtG 211 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQNLPELVKQADIIVGAVG 211 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCchhHHHHhccCCEEEEccC
Confidence 5689999999999998 9999999999999999999885432 24567888877763
No 129
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.25 E-value=0.023 Score=51.38 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=35.2
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.++.+++|.|+|+|..|+.+|+.|+..|.+|.++|+..
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 56889999999999999999999999999999999753
No 130
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.25 E-value=0.013 Score=51.47 Aligned_cols=54 Identities=20% Similarity=0.356 Sum_probs=44.5
Q ss_pred HHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 132 NEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 132 ~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
.+|.+++.-..|.......|.+++|.|+|+|.+|..+|+.|...|+ ++..+|..
T Consensus 20 ~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 20 RRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3455555545577666788999999999999999999999999998 79999875
No 131
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.21 E-value=0.052 Score=44.36 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=35.4
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCE---EEEEcCCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVK---IIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~---V~~~~~~~ 186 (210)
+..+.++++.|+|.|..|+.+|+.+...|++ |..+||+.
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 4578999999999999999999999999985 99999983
No 132
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.17 E-value=0.028 Score=50.49 Aligned_cols=39 Identities=28% Similarity=0.506 Sum_probs=35.0
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~ 188 (210)
...+++|.|+|+|.-|+.+|+.|+..|++|.++|.++.+
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 345999999999999999999999999999999976554
No 133
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.16 E-value=0.033 Score=37.54 Aligned_cols=34 Identities=35% Similarity=0.494 Sum_probs=31.1
Q ss_pred eEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (210)
Q Consensus 155 tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~ 188 (210)
++.|||-|.+|-++|..++.+|.+|..+.+....
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 5889999999999999999999999999987653
No 134
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=95.16 E-value=0.028 Score=46.55 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=31.8
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
--++-|+|-|++++.+|++++.+|++|+.+|+++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 35899999999999999999999999999997643
No 135
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.15 E-value=0.027 Score=47.61 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=45.2
Q ss_pred ccccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecCC
Q 028302 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGPL 203 (210)
Q Consensus 148 ~~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~Pl 203 (210)
+.++.||+++|||. |-+|+.+|.+|..-|++|..|....+. +...++|.++..++-
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~~l~~~~~~ADIVI~avg~ 211 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTRNLAEVARKADILVVAIGR 211 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEecCc
Confidence 56899999999999 999999999999999999999543331 245777777777653
No 136
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=94.99 E-value=0.027 Score=47.92 Aligned_cols=37 Identities=30% Similarity=0.609 Sum_probs=32.7
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
-+.||.+.|.|||.+|+-.|+.||+||++|+...-.|
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDP 247 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDP 247 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCc
Confidence 3569999999999999999999999999999875443
No 137
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.98 E-value=0.028 Score=48.05 Aligned_cols=34 Identities=26% Similarity=0.194 Sum_probs=31.1
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+|+|||.|.||..+|.+|...|.+|..+.|..
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3689999999999999999999999999998865
No 138
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.93 E-value=0.029 Score=51.33 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=31.5
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
++|||||.|.+|..+|..+..-|.+|+.||+++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 6799999999999999999988999999998753
No 139
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=94.92 E-value=0.029 Score=51.31 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=31.5
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
=++|||||.|.+|..+|..+..-|.+|..||+++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3679999999999999999999999999999874
No 140
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.85 E-value=0.032 Score=43.28 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=32.8
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
...+...+|.|+|.|+.|+..++.|+++|++|..+|.+.
T Consensus 15 ~~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 15 PGGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp TTEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 356778999999999999999999999999999999864
No 141
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=94.83 E-value=0.039 Score=46.70 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=33.9
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
.+.++++.|+|.|..|++++..|...|+ +|..+||+.
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4678999999999999999999999998 799999974
No 142
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.77 E-value=0.044 Score=45.84 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=33.6
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
...+++++|+|.|.+|+.++..+...|++|..++|+.
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3568899999999999999999999999999999874
No 143
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.76 E-value=0.042 Score=49.18 Aligned_cols=37 Identities=22% Similarity=0.456 Sum_probs=33.9
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
+.++++.|+|.|.+|..+|+.|+..|.+|.++|....
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 5689999999999999999999999999999997544
No 144
>PRK07411 hypothetical protein; Validated
Probab=94.75 E-value=0.02 Score=50.60 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=37.8
Q ss_pred CCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 142 ~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
.|.......|+..+|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus 27 ~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 27 EVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred hcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 455445678999999999999999999999999998 68888874
No 145
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=94.74 E-value=0.013 Score=48.34 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=34.6
Q ss_pred cccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 147 ~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
....|++++|.|+|.|.+|..+|+.|...|. ++..+|+.
T Consensus 18 ~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 18 GQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3467999999999999999999999998888 68888874
No 146
>PRK04148 hypothetical protein; Provisional
Probab=94.71 E-value=0.036 Score=41.64 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=32.0
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
+++++.+||+| -|..+|..|+..|.+|++.|.++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 56889999999 999999999999999999998764
No 147
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=94.65 E-value=0.046 Score=47.08 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=29.0
Q ss_pred cCeEEEEecChHHHHHHHHhccC-CCEEEE-EcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPF-GVKIIA-TKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~f-g~~V~~-~~~~~ 186 (210)
..+|||||+|+||+.+++.+... ++++.+ +|++.
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~ 38 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG 38 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence 46899999999999999999866 899886 57764
No 148
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.63 E-value=0.055 Score=48.78 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=30.5
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.|++|+|+|+|.-|+++|+.|+. |++|+.+|..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 47899999999999999999996 9999999954
No 149
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.63 E-value=0.033 Score=49.85 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=29.5
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+|||||+|.+|..+|..+.. |.+|++||+..
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~ 38 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNK 38 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCH
Confidence 689999999999999999887 79999999865
No 150
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.55 E-value=0.023 Score=45.43 Aligned_cols=43 Identities=30% Similarity=0.471 Sum_probs=37.4
Q ss_pred CCCCcccccccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCC
Q 028302 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS 185 (210)
Q Consensus 143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~ 185 (210)
|.......|++++|.|+|+|.+|.++|+-|...|+. +..+|..
T Consensus 9 ~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 9 WGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 665556789999999999999999999999999995 8888864
No 151
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.53 E-value=0.051 Score=48.94 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=33.9
Q ss_pred ccccCeEEEEecChHHHH-HHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILGFGNIGVE-LAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~-vA~~~~~fg~~V~~~~~~~~ 187 (210)
..+++++.|+|+|..|.. +|+.|+..|.+|.++|....
T Consensus 4 ~~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 4 LRRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred cCCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 356789999999999999 79999999999999997543
No 152
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.52 E-value=0.051 Score=47.10 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=35.1
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA 187 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~ 187 (210)
..+.++++.|||.|.+|+.+|+.|..-|. +|+..+|+..
T Consensus 170 ~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 170 QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 46899999999999999999999999996 6999999843
No 153
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.47 E-value=0.032 Score=49.01 Aligned_cols=44 Identities=25% Similarity=0.380 Sum_probs=38.0
Q ss_pred CCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 142 ~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
.|.......|.+++|.|+|.|.+|..+|+.|...|+ ++..+|+.
T Consensus 124 ~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 124 EVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 455444567999999999999999999999999999 69999875
No 154
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.44 E-value=0.056 Score=48.41 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=32.0
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++-+++|+|+|.+|..+|+.|+..|.+|.++|...
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 45689999999999999999999999999999754
No 155
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.39 E-value=0.055 Score=48.89 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=34.6
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.++++.|+|.|.+|.++|+.|+..|.+|.++|+..
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45789999999999999999999999999999999654
No 156
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=94.23 E-value=0.077 Score=49.33 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=36.5
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
...+..|||||||-|..|+.+++.++.+|++|+.+|+.+.
T Consensus 17 ~~~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~ 56 (577)
T PLN02948 17 VHGVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLED 56 (577)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 3558899999999999999999999999999999998764
No 157
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.16 E-value=0.031 Score=49.49 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=37.4
Q ss_pred CCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 142 KLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 142 ~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
.|.......|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 31 ~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 31 DVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred hcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 355445678999999999999999999999998888 68888864
No 158
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.15 E-value=0.062 Score=40.34 Aligned_cols=31 Identities=35% Similarity=0.572 Sum_probs=28.6
Q ss_pred eEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 155 TVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 155 tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
+|.|+|+|.+|.++|+.|...|. ++..+|+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999999 69999875
No 159
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.12 E-value=0.08 Score=44.81 Aligned_cols=54 Identities=17% Similarity=0.189 Sum_probs=45.3
Q ss_pred ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEec
Q 028302 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLG 201 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~ 201 (210)
+.++.||++.|||.|. +|+.+|.+|...|++|..++.+.+. +...++|.++...
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvi~av 210 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKNLRHHVRNADLLVVAV 210 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCCHHHHHhhCCEEEEcC
Confidence 4589999999999999 9999999999999999998875432 3567778777765
No 160
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.11 E-value=0.059 Score=45.65 Aligned_cols=37 Identities=19% Similarity=0.211 Sum_probs=34.0
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~ 186 (210)
.+.++++.|+|.|.+|++++..|...|++ |..++|+.
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 47889999999999999999999999996 99999874
No 161
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=94.08 E-value=0.057 Score=46.72 Aligned_cols=35 Identities=37% Similarity=0.470 Sum_probs=32.0
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.-++|||||||+.||-.|+.+-.-|-.|+..||+.
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsd 85 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD 85 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhcCceeEecCcch
Confidence 34689999999999999999999999999999964
No 162
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.05 E-value=0.083 Score=47.16 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=33.1
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+.++++.|+|+|..|...++.|+..|.+|.++|...
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 568899999999999999999999999999999643
No 163
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.03 E-value=0.061 Score=40.50 Aligned_cols=31 Identities=35% Similarity=0.488 Sum_probs=29.2
Q ss_pred EEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 156 VFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 156 vGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
|.|+|.|.||..+|-+|+.-|.+|..++|+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999876
No 164
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.96 E-value=0.066 Score=41.06 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=30.3
Q ss_pred eEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 155 TVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 155 tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+|+|+|.|+.|.++|..+..-|-+|..|+|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 68999999999999999999999999999974
No 165
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=93.92 E-value=0.077 Score=47.32 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=34.5
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
..+.|+++.|||.|.+|+.+++.|...|+ +|..++|+.
T Consensus 177 ~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~ 215 (414)
T PRK13940 177 DNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTI 215 (414)
T ss_pred cCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 46889999999999999999999999996 699999974
No 166
>PRK06197 short chain dehydrogenase; Provisional
Probab=93.92 E-value=0.069 Score=45.06 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=39.4
Q ss_pred hCCCCCCcccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 140 QKKLGVPTGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 140 ~~~w~~~~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.|......++.||++.|.| .|.||+++|+.+...|++|+..+|+.
T Consensus 3 ~~~~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~ 50 (306)
T PRK06197 3 MTKWTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNL 50 (306)
T ss_pred CCCCCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 355655445789999999999 69999999999999999999988863
No 167
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=93.77 E-value=0.095 Score=45.00 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=31.5
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCC--EEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~--~V~~~~~~~ 186 (210)
-.+++|+|||.|+||..+|-.+...|. ++..+|...
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 356899999999999999999987777 899999854
No 168
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.75 E-value=0.06 Score=43.57 Aligned_cols=43 Identities=26% Similarity=0.184 Sum_probs=36.8
Q ss_pred CCCCcccccccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCC
Q 028302 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS 185 (210)
Q Consensus 143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~ 185 (210)
|.......|+.++|.|+|.|.+|..+|+.|...|.. +..+|..
T Consensus 18 ~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 18 HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred cCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 443455779999999999999999999999988984 8888875
No 169
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.68 E-value=0.079 Score=45.38 Aligned_cols=38 Identities=26% Similarity=0.442 Sum_probs=34.0
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~ 187 (210)
--.|.|+.|.|+|.+|-+++.-+|+.|+ +|+++|-.++
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~ 228 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPD 228 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHH
Confidence 3458999999999999999999999999 7999997653
No 170
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.63 E-value=0.098 Score=42.27 Aligned_cols=36 Identities=25% Similarity=0.283 Sum_probs=33.4
Q ss_pred cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+.++++.|.|- |.||+.+|+.+...|.+|+..+|+.
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~ 39 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ 39 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 67999999997 9999999999999999999999864
No 171
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.61 E-value=0.089 Score=37.71 Aligned_cols=31 Identities=35% Similarity=0.716 Sum_probs=27.1
Q ss_pred EEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 156 VFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 156 vGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+-|+|+|.+|+.+++.|+..+.+|..+|+.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 5799999999999999999777999999875
No 172
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=93.57 E-value=0.11 Score=39.82 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=25.2
Q ss_pred eEEEEecChHHHHHHHHhc-cCCCEEEEEcC
Q 028302 155 TVFILGFGNIGVELAKRLR-PFGVKIIATKR 184 (210)
Q Consensus 155 tvGIiG~G~IG~~vA~~~~-~fg~~V~~~~~ 184 (210)
+|||+|+|+||+.+++.+. .-++++.+...
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d 32 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAIND 32 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeec
Confidence 7999999999999999987 56888777543
No 173
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=93.53 E-value=0.099 Score=44.13 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=33.8
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
.+.++++.|||.|..|++++..|...|+ +|..++|+.
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 4779999999999999999999999998 699999974
No 174
>PRK06153 hypothetical protein; Provisional
Probab=93.50 E-value=0.076 Score=46.76 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=33.8
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
..|++++|+|||+|.+|..++..|...|. +++.+|.-
T Consensus 172 ~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 172 AKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 57899999999999999999999999998 78898864
No 175
>PRK14982 acyl-ACP reductase; Provisional
Probab=93.47 E-value=0.12 Score=44.88 Aligned_cols=39 Identities=31% Similarity=0.490 Sum_probs=33.7
Q ss_pred ccccccCeEEEEec-ChHHHHHHHHhc-cCCC-EEEEEcCCC
Q 028302 148 GETLLGKTVFILGF-GNIGVELAKRLR-PFGV-KIIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG~-G~IG~~vA~~~~-~fg~-~V~~~~~~~ 186 (210)
+.++++++|.|+|. |.||+.+++.+. ..|. +++.++|+.
T Consensus 150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~ 191 (340)
T PRK14982 150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQ 191 (340)
T ss_pred ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCH
Confidence 45799999999998 899999999996 5674 899999864
No 176
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=93.44 E-value=0.1 Score=44.60 Aligned_cols=38 Identities=32% Similarity=0.505 Sum_probs=34.3
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 189 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~ 189 (210)
..++|.++|-|..|+++|=-+..+|.+|+++||+....
T Consensus 11 ~a~kvmLLGSGELGKEvaIe~QRLG~eViAVDrY~~AP 48 (394)
T COG0027 11 QATKVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANAP 48 (394)
T ss_pred CCeEEEEecCCccchHHHHHHHhcCCEEEEecCcCCCh
Confidence 45679999999999999999999999999999987643
No 177
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.39 E-value=0.11 Score=44.11 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=43.2
Q ss_pred ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEe
Q 028302 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGML 200 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~ 200 (210)
+.++.||++.|||.|+ +|+.+|.+|...|++|..++...+. +...++|.++..
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~l~~~~~~ADIvv~A 214 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDDLKKYTLDADILVVA 214 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCCHHHHHhhCCEEEEc
Confidence 4689999999999999 9999999999999999998854432 245667766654
No 178
>PRK12828 short chain dehydrogenase; Provisional
Probab=93.36 E-value=0.099 Score=41.81 Aligned_cols=38 Identities=37% Similarity=0.508 Sum_probs=33.8
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.+.++|+.|.| .|.||+.+++.+..-|.+|+..+|+..
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~ 42 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA 42 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence 36799999999 699999999999988999999998653
No 179
>PRK08703 short chain dehydrogenase; Provisional
Probab=93.34 E-value=0.12 Score=41.79 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=34.4
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.++++.|.| .|.||+.+|+.+...|++|+.++|+.
T Consensus 2 ~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~ 40 (239)
T PRK08703 2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQ 40 (239)
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 357899999999 69999999999999999999999876
No 180
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.30 E-value=0.067 Score=47.11 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=31.3
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.||||+|+|-||-.+|..+..-|++|++||-..
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~ 42 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQ 42 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCH
Confidence 899999999999999999999999999999754
No 181
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.26 E-value=0.12 Score=42.11 Aligned_cols=37 Identities=30% Similarity=0.445 Sum_probs=33.8
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.||++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~ 44 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP 44 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 47899999999 59999999999999999999998864
No 182
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=93.25 E-value=0.13 Score=48.16 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=45.4
Q ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCC---cccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 113 AASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP---TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 113 a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~---~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
....||.++-+=|-+. +|..- ....|++.+|.|+|.|.+|..+|+.|.+.|+ ++..+|..
T Consensus 308 P~~la~~avdlnlkLm-------------kWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 308 PKRLAERSVDLNLKLM-------------KWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HHHHHHHHHHHHHHHH-------------hhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 3556666666555554 34421 2367999999999999999999999999999 58888863
No 183
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.22 E-value=0.2 Score=46.40 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=37.9
Q ss_pred CCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 141 KKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 141 ~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..|..+......|++|.|||.|.+|-..|..|+..|.+|+.+++..
T Consensus 125 ~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~ 170 (564)
T PRK12771 125 NGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170 (564)
T ss_pred cCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3455433335679999999999999999999999999999999754
No 184
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=93.11 E-value=0.11 Score=43.32 Aligned_cols=51 Identities=24% Similarity=0.293 Sum_probs=42.2
Q ss_pred HHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 133 EMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 133 ~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
+|+++++- |.......|...+|.|+|.|.+|.++|+-+..-|. ++..+|..
T Consensus 8 RYsRQIrL--wG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD 59 (287)
T PTZ00245 8 RYDRQIRL--WGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEG 59 (287)
T ss_pred HHhHHHHH--hCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCC
Confidence 45555444 87766788999999999999999999999999998 58888764
No 185
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.10 E-value=0.11 Score=46.39 Aligned_cols=38 Identities=37% Similarity=0.336 Sum_probs=34.0
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.+..+++.|+|+|.+|+.+++.|...|.+|+.+|+.+.
T Consensus 228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~ 265 (453)
T PRK09496 228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE 265 (453)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 35579999999999999999999999999999987653
No 186
>PRK06841 short chain dehydrogenase; Provisional
Probab=93.01 E-value=0.12 Score=41.98 Aligned_cols=38 Identities=26% Similarity=0.370 Sum_probs=34.3
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.+.++++.|.| .|.||+++|+.+...|++|+..+|+..
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~ 50 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED 50 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 47899999999 599999999999999999999998653
No 187
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=92.97 E-value=0.47 Score=39.50 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=31.6
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~ 186 (210)
.|.+|.|+|.|.||...++.++.+|++ |++.+++.
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~ 155 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 689999999999999999999999997 88887654
No 188
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=92.92 E-value=0.19 Score=38.98 Aligned_cols=54 Identities=22% Similarity=0.188 Sum_probs=39.0
Q ss_pred ccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEec
Q 028302 148 GETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLG 201 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~ 201 (210)
+.++.||++.|||-+. +|+.++.+|..-|+.|...+.+.+. +...++|.++...
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~ 87 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAV 87 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-S
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeee
Confidence 4579999999999885 9999999999999999998875432 3556777777664
No 189
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.89 E-value=0.15 Score=40.99 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=33.8
Q ss_pred ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
++.++++.|.|- |.||+.+++.+..-|++|+..+|+..
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNEN 40 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367899999995 78999999999999999999998654
No 190
>PRK06523 short chain dehydrogenase; Provisional
Probab=92.83 E-value=0.15 Score=41.60 Aligned_cols=39 Identities=31% Similarity=0.461 Sum_probs=34.8
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
..+.|+++.|.| .|.||+++|+.+...|++|+..+|+..
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~ 44 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP 44 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence 458899999999 589999999999999999999998643
No 191
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=92.80 E-value=0.15 Score=46.98 Aligned_cols=37 Identities=27% Similarity=0.545 Sum_probs=34.3
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.+|++.|+|.|.+|++++..|...|++|..++|+.
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~ 412 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY 412 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 5778999999999999999999999999999999864
No 192
>PRK06398 aldose dehydrogenase; Validated
Probab=92.73 E-value=0.17 Score=41.61 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=34.2
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
+++||++.|.| .|.||+++|+.+..-|++|+..+|+..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 57899999999 679999999999999999999998653
No 193
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.66 E-value=0.15 Score=41.22 Aligned_cols=38 Identities=29% Similarity=0.497 Sum_probs=34.1
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.+.++++.|.| .|.||+++++.+...|.+|+.++|+..
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 36789999999 599999999999999999999999763
No 194
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=92.66 E-value=0.17 Score=45.07 Aligned_cols=39 Identities=36% Similarity=0.546 Sum_probs=34.7
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA 187 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~ 187 (210)
.+|.++++.|||.|.+|+-+|+.|..-|. +|+..+|+..
T Consensus 174 ~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~e 213 (414)
T COG0373 174 GSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLE 213 (414)
T ss_pred cccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHH
Confidence 45999999999999999999999999995 6888888753
No 195
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.62 E-value=0.19 Score=37.97 Aligned_cols=33 Identities=30% Similarity=0.351 Sum_probs=29.0
Q ss_pred CeEEEEec-ChHHHHHHHHhc--cCCCEEEEEcCCC
Q 028302 154 KTVFILGF-GNIGVELAKRLR--PFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~-G~IG~~vA~~~~--~fg~~V~~~~~~~ 186 (210)
.+|+|||. |++|+.+|-.+. ++.-++..+|+..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 37999999 999999999877 7777999999873
No 196
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.57 E-value=0.15 Score=41.96 Aligned_cols=38 Identities=29% Similarity=0.350 Sum_probs=33.7
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
...|++++|.|+|+|.+|..+|+.|...|. +++.+|..
T Consensus 6 ~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 6 LEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 356889999999999999999999998888 78888864
No 197
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.57 E-value=0.18 Score=43.40 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=31.4
Q ss_pred cccCeEEEEecChHHHHHHHHhccCC-CEEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg-~~V~~~~~~~ 186 (210)
+..++|+|||.|++|..+|-.+...| .+|..+|...
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 45679999999999999999988667 7999999864
No 198
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=92.54 E-value=0.18 Score=40.80 Aligned_cols=37 Identities=30% Similarity=0.426 Sum_probs=33.5
Q ss_pred ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.||++.|.|. |.||+.+|+.+..-|++|+..+|+.
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~ 39 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE 39 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence 378999999995 8999999999999999999999864
No 199
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.53 E-value=0.16 Score=41.47 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=26.7
Q ss_pred ccCeEEEEecChHHHHHHHHhccCC---CE-EEEEcCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFG---VK-IIATKRS 185 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg---~~-V~~~~~~ 185 (210)
.+.+|||||.|++|+.+++.+..-+ .+ |+.++++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~ 40 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS 40 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC
Confidence 3578999999999999999876443 44 7778764
No 200
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=92.49 E-value=0.37 Score=40.70 Aligned_cols=55 Identities=25% Similarity=0.400 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccC----CC-------EEEEEcC
Q 028302 116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR 184 (210)
Q Consensus 116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~f----g~-------~V~~~~~ 184 (210)
+|=-+++.+|+.+|-. +..|.+.+|.|+|.|.-|-.+|+.+... |+ +++.+|+
T Consensus 4 Ta~V~lAgllnAlk~~----------------g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~ 67 (279)
T cd05312 4 TAAVALAGLLAALRIT----------------GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDS 67 (279)
T ss_pred HHHHHHHHHHHHHHHh----------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcC
Confidence 4556777888888743 6789999999999999999999999877 87 8999998
Q ss_pred CC
Q 028302 185 SW 186 (210)
Q Consensus 185 ~~ 186 (210)
.+
T Consensus 68 ~G 69 (279)
T cd05312 68 KG 69 (279)
T ss_pred CC
Confidence 74
No 201
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.43 E-value=0.28 Score=38.46 Aligned_cols=39 Identities=33% Similarity=0.416 Sum_probs=32.8
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.++.|++|.|||-|+.|-.+|..|...|-+|..+.|++.
T Consensus 163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 163 EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 578899999999999999999999999999999988753
No 202
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=92.38 E-value=0.39 Score=36.35 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=45.9
Q ss_pred ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEecCCC
Q 028302 148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLGPLS 204 (210)
Q Consensus 148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~Plt 204 (210)
+.++.||++.|+| -..+|+.+|.+|..-|++|...+++.+. +...++|.++...+..
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~ 82 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKP 82 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCC
Confidence 5689999999999 5668999999999999999999865432 3567788887775543
No 203
>PRK06057 short chain dehydrogenase; Provisional
Probab=92.34 E-value=0.19 Score=41.05 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=34.1
Q ss_pred ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.+.|+++.|+|- |.||+.+++.+...|++|+.++|+..
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~ 42 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPE 42 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478999999996 99999999999999999999988643
No 204
>PRK08223 hypothetical protein; Validated
Probab=92.28 E-value=0.15 Score=43.20 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=34.8
Q ss_pred cccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 147 ~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
....|++++|.|+|+|.+|..+|..|...|. ++..+|..
T Consensus 21 ~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 21 EQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4578999999999999999999999999998 68888864
No 205
>PRK06949 short chain dehydrogenase; Provisional
Probab=92.26 E-value=0.23 Score=40.35 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=34.3
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.++++.|.| .|.||+.+++.+...|++|+..+|+.
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~ 43 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRV 43 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 457899999999 59999999999999999999998864
No 206
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=92.25 E-value=0.1 Score=43.83 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=37.1
Q ss_pred CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
|.......|++++|.|+|.|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 20 YGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 66555678999999999999999999999998884 78888864
No 207
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=92.25 E-value=0.14 Score=46.22 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=32.0
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
-+++.|||-|-||-++|..++.||++|..+.+...
T Consensus 173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~ 207 (454)
T COG1249 173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDR 207 (454)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 47899999999999999999999999999987653
No 208
>PLN02780 ketoreductase/ oxidoreductase
Probab=92.15 E-value=0.57 Score=40.10 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=32.5
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..|+++.|.| .|.||+++|+.+..-|++|+.++|+.
T Consensus 51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~ 87 (320)
T PLN02780 51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNP 87 (320)
T ss_pred ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCH
Confidence 3689999999 57899999999999999999999875
No 209
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=92.10 E-value=0.21 Score=40.28 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=34.1
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+.+.++++.|.| .|.||+.+++.+..-|.+|+..+|+.
T Consensus 2 ~~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~ 40 (251)
T PRK12826 2 RDLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICG 40 (251)
T ss_pred CCCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 346789999999 89999999999999999999999874
No 210
>PRK08264 short chain dehydrogenase; Validated
Probab=92.10 E-value=0.18 Score=40.49 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=34.0
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGV-KIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~-~V~~~~~~~~ 187 (210)
++.++++.|.| .|.||+++|+.|..-|. +|+.++|+.+
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~ 42 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPE 42 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChh
Confidence 46789999999 69999999999999999 9999998654
No 211
>PRK05717 oxidoreductase; Validated
Probab=92.02 E-value=0.23 Score=40.52 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=34.3
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.||++.|.| .|.||+++|+.+..-|++|+..+++.
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~ 44 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR 44 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 568899999999 69999999999999999999998764
No 212
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.99 E-value=0.19 Score=43.36 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=32.3
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
..|.+|.|+|.|.||...++.+|..|++|++++++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~ 205 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR 205 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 35889999999999999999999999999999874
No 213
>PRK07576 short chain dehydrogenase; Provisional
Probab=91.92 E-value=0.23 Score=40.92 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=34.3
Q ss_pred cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.++.++++.|.|- |.||+.+++.+...|++|+..+|+.
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~ 43 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQ 43 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3578999999996 8999999999999999999999864
No 214
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=91.88 E-value=0.24 Score=40.41 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=33.1
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++.||++.|.| .|.||+++|+.+...|++|++.++..
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~ 44 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE 44 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc
Confidence 58899999999 66899999999999999999988754
No 215
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.88 E-value=0.19 Score=42.43 Aligned_cols=55 Identities=11% Similarity=0.084 Sum_probs=45.8
Q ss_pred ccccccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCCCC--CCCcccCceeEEecC
Q 028302 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWA--SHSQVSCQSSGMLGP 202 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~~~--~~~~~~~~~~~~~~P 202 (210)
+.++.|+++.|+|.+ ..|+.+|.++..+|++|..+.++.+ ++...++|.++...|
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avg 204 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAG 204 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCC
Confidence 468999999999999 9999999999999999988876543 235677888887765
No 216
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.86 E-value=0.25 Score=42.59 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=31.2
Q ss_pred cccCeEEEEecChHHHHHHHHhccCC-CEEEEEcCCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFG-VKIIATKRSWA 187 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg-~~V~~~~~~~~ 187 (210)
+..++|+|||.|++|..+|-.+..-| ++|..+|....
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 44579999999999999999987666 48999998654
No 217
>PRK07890 short chain dehydrogenase; Provisional
Probab=91.79 E-value=0.21 Score=40.62 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=33.1
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+.++++.|.| .|.||+.+|+.+..-|++|+..+|+.
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~ 39 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTA 39 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCH
Confidence 6789999999 68999999999999999999999865
No 218
>PRK08265 short chain dehydrogenase; Provisional
Probab=91.77 E-value=0.25 Score=40.56 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=34.3
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.++++++.|.| .|.||+++|+.+...|++|+..+|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 47899999999 599999999999999999999998753
No 219
>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]
Probab=91.76 E-value=0.86 Score=38.93 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=62.3
Q ss_pred HHHHhcC-CCceEEEEccccCCccchhHHhhCCc-EEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCC
Q 028302 68 SNCISRA-NQMKLIMQFGVGLEGVDINAATRCGI-KVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGV 145 (210)
Q Consensus 68 ~~~l~~~-p~Lk~i~~~~aG~d~id~~~~~~~gi-~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~ 145 (210)
...++.+ ++.-+|-....|+-++-.+ ..++ +|.|+.+-+..| ++ .++.=++...+.+
T Consensus 95 ~~tl~ayg~D~iViRH~~egaa~~~a~---~~~~~pvINaGDG~~qH--PT--Q~LLDl~TI~~~~-------------- 153 (316)
T COG0540 95 IRTLSAYGVDAIVIRHPEEGAARLLAE---FSGVNPVINAGDGSHQH--PT--QALLDLYTIREEF-------------- 153 (316)
T ss_pred HHHHHhhCCCEEEEeCccccHHHHHHH---hcCCCceEECCCCCCCC--cc--HHHHHHHHHHHHh--------------
Confidence 3345555 5555566666666554332 2356 799988764323 22 2333333333322
Q ss_pred CcccccccCeEEEEe---cChHHHHHHHHhccCCCEEEEEcCC
Q 028302 146 PTGETLLGKTVFILG---FGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 146 ~~~~~l~~~tvGIiG---~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
+ .+.|++|+|+| +|+..+..++.|+.||++|..+.|.
T Consensus 154 --G-~~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~ 193 (316)
T COG0540 154 --G-RLDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPE 193 (316)
T ss_pred --C-CcCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECch
Confidence 2 39999999999 9999999999999999999999984
No 220
>PRK06172 short chain dehydrogenase; Provisional
Probab=91.73 E-value=0.25 Score=40.17 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=34.1
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.+.+|++.|.| .|.||+++|+.+..-|++|+..+|+.+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 42 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAA 42 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 47799999999 589999999999999999999998753
No 221
>PRK08862 short chain dehydrogenase; Provisional
Probab=91.69 E-value=0.25 Score=40.03 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=33.4
Q ss_pred ccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
+++||++.|.|.++ ||+++|+.+...|++|+..+|+..
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~ 40 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS 40 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 47899999999655 999999999999999999988654
No 222
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.66 E-value=0.19 Score=43.09 Aligned_cols=35 Identities=31% Similarity=0.571 Sum_probs=31.7
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
.|++|.|+|.|.+|...++.++.+|+ +|++.+++.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~ 204 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP 204 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence 58999999999999999999999999 688888764
No 223
>PRK07060 short chain dehydrogenase; Provisional
Probab=91.65 E-value=0.26 Score=39.66 Aligned_cols=37 Identities=30% Similarity=0.460 Sum_probs=33.8
Q ss_pred ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.++++.|.|. |.||+.+++.+..-|.+|+.++|+.
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~ 43 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNA 43 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478899999997 8999999999999999999999865
No 224
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=91.65 E-value=0.26 Score=40.46 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=32.6
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+.+|++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~ 39 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSA 39 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 6789999999 57899999999999999999998864
No 225
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.64 E-value=0.26 Score=39.47 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=33.8
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
++.+|++.|.| .|.||+.+++.+..-|++|+..+|+..
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 40 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDK 40 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 47889999999 689999999999999999999988653
No 226
>PRK09186 flagellin modification protein A; Provisional
Probab=91.64 E-value=0.21 Score=40.55 Aligned_cols=37 Identities=38% Similarity=0.429 Sum_probs=33.1
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
+.+|++.|.| .|.||+.+|+.|..-|++|+..+|+..
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~ 39 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKE 39 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChH
Confidence 5789999999 589999999999999999999988643
No 227
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=91.63 E-value=0.25 Score=40.47 Aligned_cols=39 Identities=31% Similarity=0.438 Sum_probs=33.8
Q ss_pred ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
...+.+++|.|+| .|.||+.+++.|..-|.+|+++.|+.
T Consensus 12 ~~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~ 51 (251)
T PLN00141 12 AENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDV 51 (251)
T ss_pred cccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCH
Confidence 3567789999999 69999999999998899999887754
No 228
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=91.60 E-value=0.22 Score=42.22 Aligned_cols=34 Identities=21% Similarity=0.203 Sum_probs=29.3
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS 185 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~ 185 (210)
.++++.|+|.|.||...++.++.+|++ |+++|+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~ 178 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETN 178 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 478899999999999999999999998 5556654
No 229
>PRK08339 short chain dehydrogenase; Provisional
Probab=91.58 E-value=0.26 Score=40.64 Aligned_cols=37 Identities=30% Similarity=0.369 Sum_probs=33.2
Q ss_pred ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.||++.|.|- |.||+++|+.+...|++|+..+|+.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~ 42 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNE 42 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999999995 6899999999999999999999864
No 230
>PRK07831 short chain dehydrogenase; Provisional
Probab=91.54 E-value=0.25 Score=40.45 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=33.3
Q ss_pred cccccCeEEEEec-C-hHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGF-G-NIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~-G-~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.++++.|.|- | .||+++++.+...|++|+..++..
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~ 52 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE 52 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4567899999996 6 699999999999999999988754
No 231
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=91.53 E-value=0.22 Score=42.89 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=32.1
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.|.+|.|+|.|.+|...++.++.+|.+|++.+++.
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~ 200 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP 200 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 48999999999999999999999999999988754
No 232
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=91.49 E-value=0.25 Score=40.07 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=34.5
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.++++.|.| .|.||..+++.|...|++|+.++|+.
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~ 46 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTE 46 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCH
Confidence 467899999998 78899999999999999999999875
No 233
>PRK08628 short chain dehydrogenase; Provisional
Probab=91.48 E-value=0.24 Score=40.33 Aligned_cols=39 Identities=28% Similarity=0.301 Sum_probs=34.5
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
-.+.|+++.|.| .|.||+.+|+.+...|++|+..+|+..
T Consensus 3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~ 42 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP 42 (258)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence 358899999999 689999999999999999999987654
No 234
>PRK07806 short chain dehydrogenase; Provisional
Probab=91.44 E-value=0.28 Score=39.69 Aligned_cols=37 Identities=32% Similarity=0.445 Sum_probs=32.8
Q ss_pred ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.++++.|.|- |.||+.+++.+..-|.+|+..+|+.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 367899999995 9999999999999999999988754
No 235
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=91.44 E-value=0.32 Score=39.35 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=37.1
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.-+|.|++|.|||-|.+|..=|+.+...|++|+.+++...
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~ 46 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFE 46 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCcc
Confidence 4579999999999999999999999999999999999773
No 236
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=91.42 E-value=0.27 Score=40.12 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=36.7
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 189 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~ 189 (210)
.-.++|++|.|||-|.++.+=++.|..+|++|..+++...++
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~e 61 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKE 61 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHH
Confidence 356779999999999999998999999999999999876544
No 237
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=91.42 E-value=0.24 Score=44.51 Aligned_cols=46 Identities=30% Similarity=0.482 Sum_probs=39.6
Q ss_pred hCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 140 QKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 140 ~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
+..|... .+++||+|+|||.|+.|-.++.-|..-|.+|..+-|++.
T Consensus 164 S~~~~~~--~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 164 SADWPNP--EDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred hhcCCCc--cccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 3445543 689999999999999999999999999999999988764
No 238
>PRK06125 short chain dehydrogenase; Provisional
Probab=91.42 E-value=0.28 Score=40.10 Aligned_cols=37 Identities=30% Similarity=0.379 Sum_probs=33.3
Q ss_pred ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.++++.|.|- |.||+.+|+.+...|++|+..+|+.
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~ 41 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDA 41 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 367899999996 7899999999999999999999864
No 239
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=91.39 E-value=0.24 Score=42.46 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=32.2
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.|.+|.|.|.|.+|...++.++.+|++|++.+++.
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~ 199 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGA 199 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCCh
Confidence 48999999999999999999999999999988764
No 240
>PLN02740 Alcohol dehydrogenase-like
Probab=91.34 E-value=0.25 Score=43.19 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=32.4
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
-.|.+|.|+|.|.||...++.++.+|+ +|++.+++.
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~ 233 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINP 233 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCCh
Confidence 358999999999999999999999999 699988754
No 241
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=91.28 E-value=0.16 Score=43.04 Aligned_cols=44 Identities=34% Similarity=0.455 Sum_probs=37.7
Q ss_pred CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
|.......|...+|.|+|+|.+|.++|+-|...|. +|..+|...
T Consensus 9 ~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 9 LGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred cCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 55445577999999999999999999999999999 588898753
No 242
>PRK06114 short chain dehydrogenase; Provisional
Probab=91.26 E-value=0.31 Score=39.78 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=34.1
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.+.+|++.|.| .|.||+++|+.+...|++|+..+|+..
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~ 43 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTD 43 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 57899999999 779999999999999999999988653
No 243
>PRK07062 short chain dehydrogenase; Provisional
Probab=91.18 E-value=0.28 Score=40.20 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=34.1
Q ss_pred cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.||++.|.|- |.||+++|+.+..-|++|+..+|+.
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~ 42 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDE 42 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3588999999995 7899999999999999999999865
No 244
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=91.15 E-value=0.32 Score=39.60 Aligned_cols=37 Identities=35% Similarity=0.533 Sum_probs=33.7
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.+|++.|.| .|.||+++|++|..-|++|+..+|+.
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~ 43 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITA 43 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCH
Confidence 47899999999 68999999999999999999999874
No 245
>PRK07856 short chain dehydrogenase; Provisional
Probab=91.14 E-value=0.27 Score=39.98 Aligned_cols=37 Identities=24% Similarity=0.455 Sum_probs=33.4
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.+|++.|.| .|.||+++|+.|..-|.+|+..+|+.
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~ 40 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA 40 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence 46799999999 68899999999999999999999865
No 246
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=91.14 E-value=0.29 Score=42.50 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=26.4
Q ss_pred CeEEEEecChHHHHHHHHhcc-CCCEEEEE-cCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRP-FGVKIIAT-KRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~-fg~~V~~~-~~~~ 186 (210)
.+|||+|+|+||+..++.+.. -+.++.++ |+..
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~ 40 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI 40 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC
Confidence 599999999999999999764 36888874 4443
No 247
>PRK06138 short chain dehydrogenase; Provisional
Probab=91.11 E-value=0.32 Score=39.35 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=33.1
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.++++.|.| .|.||+.+|+.+..-|++|+..+|+.
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~ 39 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDA 39 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCH
Confidence 36799999999 58999999999998999999998864
No 248
>PRK07326 short chain dehydrogenase; Provisional
Probab=91.08 E-value=0.28 Score=39.30 Aligned_cols=36 Identities=36% Similarity=0.456 Sum_probs=32.4
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+.++++.|.| .|.||+.+++.+...|.+|+..+|++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~ 40 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQ 40 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCH
Confidence 4579999998 69999999999998899999999865
No 249
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.08 E-value=0.31 Score=40.54 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=32.2
Q ss_pred cccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCC
Q 028302 151 LLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 151 l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
+.||++.|.|-+ .||+++|+.|..-|++|+..+|+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~ 42 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQG 42 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCc
Confidence 679999999987 69999999999999999998875
No 250
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.05 E-value=0.31 Score=39.90 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=32.5
Q ss_pred ccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCC
Q 028302 150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 150 ~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.+.||++.|.|-+ .||+++|+.|..-|++|+..+|.
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 3789999999985 79999999999999999998775
No 251
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=91.05 E-value=0.3 Score=42.50 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=32.2
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
-.|.+|.|+|.|.||...++.++.+|+ +|++.+++.
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~ 220 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINP 220 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 348999999999999999999999999 799988754
No 252
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.04 E-value=0.3 Score=42.39 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=31.7
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.|++|.|.|.|.||...++.++.+|++|+..+.+.
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~ 217 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSS 217 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 58899999999999999999999999998877654
No 253
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=91.03 E-value=0.32 Score=39.59 Aligned_cols=37 Identities=24% Similarity=0.493 Sum_probs=33.8
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.++++.|.| .|.||+.+|+.+..-|.+|+.++|+.
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~ 45 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNA 45 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 47899999999 68999999999998999999999875
No 254
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=91.01 E-value=0.5 Score=39.35 Aligned_cols=55 Identities=24% Similarity=0.391 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccC----CC-------EEEEEcC
Q 028302 116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPF----GV-------KIIATKR 184 (210)
Q Consensus 116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~f----g~-------~V~~~~~ 184 (210)
+|=-+++.+|+.+|-. +..|.+.++.++|.|..|-.+|+.+... |. +++.+|+
T Consensus 4 TaaV~lAgll~Al~~~----------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~ 67 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVT----------------GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDS 67 (255)
T ss_dssp HHHHHHHHHHHHHHHH----------------TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEET
T ss_pred hHHHHHHHHHHHHHHh----------------CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEec
Confidence 4556778888888755 6789999999999999999999999877 88 5899998
Q ss_pred CC
Q 028302 185 SW 186 (210)
Q Consensus 185 ~~ 186 (210)
.+
T Consensus 68 ~G 69 (255)
T PF03949_consen 68 KG 69 (255)
T ss_dssp TE
T ss_pred cc
Confidence 63
No 255
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.01 E-value=0.33 Score=39.50 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=33.5
Q ss_pred ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.||++.|.|- |.||+++|+.|...|.+|+..+|+.
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~ 43 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL 43 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH
Confidence 478999999995 8999999999999999999998864
No 256
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.01 E-value=0.24 Score=40.13 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=33.3
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
++++++.|.| .|.||+.+|+.+...|.+|+.++|+..
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~ 39 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDE 39 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 4679999999 799999999999999999999998754
No 257
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.01 E-value=0.32 Score=40.30 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=28.8
Q ss_pred ccCeEEEEecChHHHHHHHHhccCC-----------CEEEEEcCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFG-----------VKIIATKRS 185 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg-----------~~V~~~~~~ 185 (210)
+..+|.|||.|.+|..+++.|...| .++..+|..
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 5789999999999999999987543 388999864
No 258
>PRK09072 short chain dehydrogenase; Provisional
Probab=91.00 E-value=0.33 Score=39.76 Aligned_cols=36 Identities=33% Similarity=0.509 Sum_probs=32.9
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+.++++.|.| .|.||+++++.+...|.+|+..+|+.
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~ 39 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNA 39 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 5789999999 69999999999999999999999864
No 259
>PRK07774 short chain dehydrogenase; Provisional
Probab=90.99 E-value=0.33 Score=39.24 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=33.5
Q ss_pred ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.++++.|.|- |.||+.+++.+...|.+|+..+|+.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~ 40 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINA 40 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 367899999995 9999999999999999999999875
No 260
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=90.99 E-value=0.3 Score=35.65 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=25.6
Q ss_pred eEEEEe-cChHHHHHHHHhc-cCCCEEEE-EcCCC
Q 028302 155 TVFILG-FGNIGVELAKRLR-PFGVKIIA-TKRSW 186 (210)
Q Consensus 155 tvGIiG-~G~IG~~vA~~~~-~fg~~V~~-~~~~~ 186 (210)
+|+||| .|.+|+++.++|. -..+++.. ++++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 699999 9999999999988 66777554 44444
No 261
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=90.97 E-value=0.48 Score=39.44 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-----------EEEEEcC
Q 028302 116 CAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-----------KIIATKR 184 (210)
Q Consensus 116 vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-----------~V~~~~~ 184 (210)
+|=-+++.+|+.+|-. +..|.+.++.|+|.|.-|-.+|+.+...++ +++.+|+
T Consensus 4 TaaV~lAgllnAlk~~----------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~ 67 (254)
T cd00762 4 TASVAVAGLLAALKVT----------------KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDR 67 (254)
T ss_pred hHHHHHHHHHHHHHHh----------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECC
Confidence 4556777788887733 578999999999999999999999997777 6888888
Q ss_pred CC
Q 028302 185 SW 186 (210)
Q Consensus 185 ~~ 186 (210)
..
T Consensus 68 ~G 69 (254)
T cd00762 68 KG 69 (254)
T ss_pred CC
Confidence 64
No 262
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=90.97 E-value=0.33 Score=39.64 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=33.6
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
-.+.+|++.|.| .|.||+.+|+.+...|++|+.+++.
T Consensus 11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 358899999999 6899999999999999999999876
No 263
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.89 E-value=0.28 Score=41.83 Aligned_cols=35 Identities=26% Similarity=0.389 Sum_probs=32.0
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~ 186 (210)
.|.+|.|+|.|.+|..+++.++.+|++ |++.+++.
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~ 198 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSP 198 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 389999999999999999999999999 99988753
No 264
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=90.87 E-value=0.35 Score=41.63 Aligned_cols=37 Identities=24% Similarity=0.265 Sum_probs=32.9
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
++|++|.|.| .|-||+.+++.|..-|.+|++.+|...
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~ 39 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPP 39 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4689999999 599999999999999999999987643
No 265
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=90.86 E-value=0.26 Score=43.03 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=25.4
Q ss_pred CeEEEEecChHHHHHHHHhcc-----CCCEEEEEcC
Q 028302 154 KTVFILGFGNIGVELAKRLRP-----FGVKIIATKR 184 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~-----fg~~V~~~~~ 184 (210)
.+|||=|||+|||.+.|.+-. -+++|.+.+.
T Consensus 4 ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd 39 (361)
T PTZ00434 4 IKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVD 39 (361)
T ss_pred eEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeC
Confidence 489999999999999998653 2688888764
No 266
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=90.85 E-value=0.29 Score=42.36 Aligned_cols=36 Identities=33% Similarity=0.489 Sum_probs=32.5
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
-.|.+|.|+|.|.+|+..++.++.+|+ +|++.+++.
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~ 222 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNP 222 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 358999999999999999999999999 799988764
No 267
>PRK12829 short chain dehydrogenase; Provisional
Probab=90.85 E-value=0.29 Score=39.89 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=34.3
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.++++.|.| .|.||+.+++.|...|.+|+..+|+.
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~ 45 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSE 45 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 347889999999 69999999999999999999999864
No 268
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.81 E-value=0.35 Score=39.15 Aligned_cols=36 Identities=36% Similarity=0.547 Sum_probs=32.8
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..|++|.|.|.|.+|+.+++.++..|.+|++.+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 457899999999999999999999999999998763
No 269
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.80 E-value=0.34 Score=39.82 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=33.6
Q ss_pred cccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.||++.|.|-+ .||+++|+.+..-|++|+..+|+.
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 45789999999975 699999999999999999888764
No 270
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.79 E-value=0.34 Score=39.70 Aligned_cols=35 Identities=29% Similarity=0.400 Sum_probs=31.3
Q ss_pred ccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcC
Q 028302 150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKR 184 (210)
Q Consensus 150 ~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~ 184 (210)
.|.||++.|.|-+ .||+++|+.+...|++|+..++
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~ 40 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYW 40 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEec
Confidence 5889999999984 7999999999999999998753
No 271
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.79 E-value=0.36 Score=40.90 Aligned_cols=54 Identities=17% Similarity=0.092 Sum_probs=43.7
Q ss_pred ccccccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEec
Q 028302 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLG 201 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~ 201 (210)
+.++.||++.|||-| -+|+.+|.+|..-|++|..++...+. +...++|.++...
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~~ADIvV~Av 208 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQNADIVCVGV 208 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCEEEEec
Confidence 468999999999999 89999999999999999998754332 3456777777664
No 272
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=90.77 E-value=0.27 Score=36.20 Aligned_cols=32 Identities=28% Similarity=0.425 Sum_probs=27.1
Q ss_pred eEEEEec-ChHHHHHHHHhcc-CCCEEE-EEcCCC
Q 028302 155 TVFILGF-GNIGVELAKRLRP-FGVKII-ATKRSW 186 (210)
Q Consensus 155 tvGIiG~-G~IG~~vA~~~~~-fg~~V~-~~~~~~ 186 (210)
+|+|+|+ |++|+.+++.+.. =++++. ++++..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP 36 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 7999999 9999999999996 888855 566665
No 273
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.77 E-value=0.32 Score=39.64 Aligned_cols=36 Identities=31% Similarity=0.483 Sum_probs=32.4
Q ss_pred ccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCC
Q 028302 150 TLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 150 ~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.+.++++.|.|-+ .||+.+|+.+...|++|+..+|+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 4678999999974 69999999999999999999887
No 274
>PRK07814 short chain dehydrogenase; Provisional
Probab=90.75 E-value=0.36 Score=39.65 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=33.4
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.+.++++.|.| .|.||+++++.|..-|++|+..+|+..
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~ 45 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTES 45 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 47799999999 557999999999999999999998753
No 275
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.72 E-value=0.38 Score=39.58 Aligned_cols=36 Identities=31% Similarity=0.468 Sum_probs=32.4
Q ss_pred ccccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcCC
Q 028302 150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 150 ~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.+.||++.|.|- +.||+++|+.+..-|++|+..+|+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 478999999997 589999999999999999988765
No 276
>PRK06500 short chain dehydrogenase; Provisional
Probab=90.70 E-value=0.37 Score=38.89 Aligned_cols=37 Identities=35% Similarity=0.492 Sum_probs=33.0
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.++++.|.| .|.||+.+++.+...|++|+..+|+.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~ 40 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDP 40 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH
Confidence 36789999999 59999999999999999999998863
No 277
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=90.58 E-value=0.3 Score=35.02 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=25.6
Q ss_pred eEEEEecChHHHHHHHHhccC--CCEEE-EEcCCC
Q 028302 155 TVFILGFGNIGVELAKRLRPF--GVKII-ATKRSW 186 (210)
Q Consensus 155 tvGIiG~G~IG~~vA~~~~~f--g~~V~-~~~~~~ 186 (210)
++||||+|++|+...+-+... +++|. .+|+++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~ 36 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP 36 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH
Confidence 799999999999999777755 66766 567764
No 278
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=90.58 E-value=0.3 Score=42.78 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=32.2
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.|++|.|.|.|.+|...++.++.+|++|++.+++.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 58999999999999999999999999999987653
No 279
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=90.57 E-value=0.38 Score=39.24 Aligned_cols=38 Identities=26% Similarity=0.466 Sum_probs=34.1
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.++++.|.| .|.||+.+|+.+...|.+|+..+|+.
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~ 46 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKA 46 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 347799999999 69999999999999999999998864
No 280
>PRK07825 short chain dehydrogenase; Provisional
Probab=90.56 E-value=0.37 Score=39.68 Aligned_cols=37 Identities=30% Similarity=0.404 Sum_probs=33.0
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++.++++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~ 39 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDE 39 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCH
Confidence 46789999999 59999999999999999999998864
No 281
>PRK12862 malic enzyme; Reviewed
Probab=90.55 E-value=1 Score=43.32 Aligned_cols=66 Identities=20% Similarity=0.162 Sum_probs=53.5
Q ss_pred CcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-
Q 028302 99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV- 177 (210)
Q Consensus 99 gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~- 177 (210)
+|++.|- +. +-+|=.+++.+++.+|-. ++.+.+.+|.|.|.|.-|..+|+.+...|.
T Consensus 161 ~ip~f~D-D~-----~GTa~v~la~l~~a~~~~----------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 218 (763)
T PRK12862 161 KIPVFHD-DQ-----HGTAIIVAAALLNGLKLV----------------GKDIEDVKLVASGAGAAALACLDLLVSLGVK 218 (763)
T ss_pred CCceEec-Cc-----ccHHHHHHHHHHHHHHHh----------------CCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence 5777774 22 446667777788877743 688999999999999999999999999899
Q ss_pred --EEEEEcCCC
Q 028302 178 --KIIATKRSW 186 (210)
Q Consensus 178 --~V~~~~~~~ 186 (210)
+++.+|+.+
T Consensus 219 ~~~i~~~D~~G 229 (763)
T PRK12862 219 RENIWVTDIKG 229 (763)
T ss_pred cccEEEEcCCC
Confidence 799999764
No 282
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.55 E-value=0.36 Score=40.27 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=32.1
Q ss_pred cccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+.||++.|.|-+ .||+++|+++..-|++|+..+|+.
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~ 41 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNE 41 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCH
Confidence 578999999984 799999999999999999888763
No 283
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.52 E-value=0.25 Score=46.42 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=31.8
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
..++-|+|+|++|+.+|+.|+..|.+++..|..++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~ 434 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPD 434 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHH
Confidence 46899999999999999999999999999998753
No 284
>PLN02253 xanthoxin dehydrogenase
Probab=90.51 E-value=0.38 Score=39.82 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=33.9
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.+|++.|.| .|.||+++|+.+..-|++|+..++..
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~ 52 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQD 52 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 467899999999 68999999999999999999998754
No 285
>PRK06198 short chain dehydrogenase; Provisional
Probab=90.49 E-value=0.34 Score=39.45 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=33.9
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVK-IIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~-V~~~~~~~ 186 (210)
..+.+|++.|.| .|.||+.+++.+...|.+ |+.++|+.
T Consensus 2 ~~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~ 41 (260)
T PRK06198 2 GRLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNA 41 (260)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCH
Confidence 357899999999 589999999999999999 99999864
No 286
>PRK14851 hypothetical protein; Provisional
Probab=90.49 E-value=0.22 Score=47.21 Aligned_cols=42 Identities=19% Similarity=0.197 Sum_probs=35.4
Q ss_pred CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcC
Q 028302 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKR 184 (210)
Q Consensus 143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~ 184 (210)
|.......|++++|+|+|+|.+|..+|..|...|. ++..+|.
T Consensus 33 ~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~ 75 (679)
T PRK14851 33 FTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADF 75 (679)
T ss_pred cCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcC
Confidence 44345578999999999999999999999998888 6777775
No 287
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=90.49 E-value=0.33 Score=38.82 Aligned_cols=38 Identities=32% Similarity=0.433 Sum_probs=33.4
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
++.++++.|.| .|.||+.+++.+..-|.+|+.++|+..
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~ 40 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEE 40 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChh
Confidence 35678999999 699999999999999999999998754
No 288
>PRK08278 short chain dehydrogenase; Provisional
Probab=90.49 E-value=0.41 Score=39.66 Aligned_cols=38 Identities=34% Similarity=0.510 Sum_probs=33.9
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.+.++++.|.| .|.||+.+|+.+...|++|+.++|+..
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAE 41 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccc
Confidence 36789999999 699999999999999999999998654
No 289
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=90.48 E-value=0.35 Score=40.76 Aligned_cols=35 Identities=37% Similarity=0.317 Sum_probs=31.1
Q ss_pred ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+++|.|.| .|-||+.+++.|..-|.+|++++|..
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~ 38 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDP 38 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 368999999 79999999999999999999887653
No 290
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=90.47 E-value=0.4 Score=38.66 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=32.5
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+.++++.|.| .|.||+.+++.|..-|.+|+.++++.
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~ 37 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNR 37 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence 4689999999 69999999999999999999998864
No 291
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=90.47 E-value=0.38 Score=39.22 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=33.3
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.+|++.|.| .|.||+++|+.|..-|++|+.++|+.
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~ 42 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE 42 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence 47889999999 58899999999999999999999864
No 292
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=90.44 E-value=0.39 Score=39.33 Aligned_cols=36 Identities=31% Similarity=0.436 Sum_probs=32.6
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+.+|++.|.| .|.||+++|+.+...|++|+..+|+.
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSA 40 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 6789999999 47899999999999999999999864
No 293
>PRK05876 short chain dehydrogenase; Provisional
Probab=90.43 E-value=0.39 Score=39.95 Aligned_cols=38 Identities=16% Similarity=0.315 Sum_probs=34.0
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.||++.|.| .|.||+++|+.|..-|++|+..+++.
T Consensus 2 ~~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~ 40 (275)
T PRK05876 2 DGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDK 40 (275)
T ss_pred CCcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 347899999998 88999999999999999999998764
No 294
>PRK05866 short chain dehydrogenase; Provisional
Probab=90.42 E-value=0.4 Score=40.37 Aligned_cols=40 Identities=25% Similarity=0.377 Sum_probs=35.6
Q ss_pred cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
....+.++++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus 34 ~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~ 74 (293)
T PRK05866 34 QPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRE 74 (293)
T ss_pred CCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 34678899999999 59999999999999999999999864
No 295
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=90.40 E-value=0.8 Score=40.69 Aligned_cols=67 Identities=27% Similarity=0.361 Sum_probs=54.7
Q ss_pred CCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC
Q 028302 98 CGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV 177 (210)
Q Consensus 98 ~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~ 177 (210)
..|+|.|- .-.-+|=.+++.+|+.+|-. ++.|++.+|.+.|.|.-|-.+++.+++.|+
T Consensus 166 ~~IPvFhD------DqqGTaiv~lA~llnalk~~----------------gk~l~d~kiv~~GAGAAgiaia~~l~~~g~ 223 (432)
T COG0281 166 MNIPVFHD------DQQGTAIVTLAALLNALKLT----------------GKKLKDQKIVINGAGAAGIAIADLLVAAGV 223 (432)
T ss_pred CCCCcccc------cccHHHHHHHHHHHHHHHHh----------------CCCccceEEEEeCCcHHHHHHHHHHHHhCC
Confidence 35777663 22456767788888877644 789999999999999999999999999999
Q ss_pred ---EEEEEcCCC
Q 028302 178 ---KIIATKRSW 186 (210)
Q Consensus 178 ---~V~~~~~~~ 186 (210)
+|+.+|+++
T Consensus 224 ~~~~i~~~D~~G 235 (432)
T COG0281 224 KEENIFVVDRKG 235 (432)
T ss_pred CcccEEEEecCC
Confidence 599999874
No 296
>PRK12939 short chain dehydrogenase; Provisional
Probab=90.39 E-value=0.44 Score=38.37 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=33.5
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.+.++++.|.| .|.||+.+|+.+..-|++|+..+|+..
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~ 42 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAA 42 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 46789999999 599999999999999999999987643
No 297
>PRK12861 malic enzyme; Reviewed
Probab=90.36 E-value=0.92 Score=43.53 Aligned_cols=66 Identities=18% Similarity=0.129 Sum_probs=54.3
Q ss_pred CcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-
Q 028302 99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV- 177 (210)
Q Consensus 99 gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~- 177 (210)
.|++.|- +. +-+|=.+++.+|+.+|-. ++.+.+.+|.+.|.|.-|..+|+.+...|.
T Consensus 157 ~ipvf~D-D~-----qGTa~v~lA~llnal~~~----------------gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~ 214 (764)
T PRK12861 157 KIPVFHD-DQ-----HGTAITVSAAFINGLKVV----------------GKSIKEVKVVTSGAGAAALACLDLLVDLGLP 214 (764)
T ss_pred CCCeecc-cc-----chHHHHHHHHHHHHHHHh----------------CCChhHcEEEEECHhHHHHHHHHHHHHcCCC
Confidence 6888774 22 456667888888888743 688999999999999999999999999999
Q ss_pred --EEEEEcCCC
Q 028302 178 --KIIATKRSW 186 (210)
Q Consensus 178 --~V~~~~~~~ 186 (210)
+++.+|+.+
T Consensus 215 ~~~i~~~D~~G 225 (764)
T PRK12861 215 VENIWVTDIEG 225 (764)
T ss_pred hhhEEEEcCCC
Confidence 799999754
No 298
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=90.34 E-value=0.19 Score=45.04 Aligned_cols=43 Identities=23% Similarity=0.235 Sum_probs=38.1
Q ss_pred CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
|.......|...+|.|+|.|.+|.++++-|.--|. ++..+|..
T Consensus 10 wG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~ 53 (425)
T cd01493 10 WGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGS 53 (425)
T ss_pred hHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCC
Confidence 77666788999999999999999999999998888 68888875
No 299
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=90.32 E-value=0.4 Score=39.16 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=33.5
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.||++.|.| .|.||+++|+++..-|++|+.++++.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~ 42 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE 42 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence 47899999999 78999999999999999999988754
No 300
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.27 E-value=0.39 Score=39.47 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=33.1
Q ss_pred ccccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.+|++.|.|- +.||+++|+.+..-|++|+..+|+.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence 478999999996 7999999999999999999998754
No 301
>PRK14852 hypothetical protein; Provisional
Probab=90.25 E-value=0.33 Score=47.61 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=36.0
Q ss_pred CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcC
Q 028302 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKR 184 (210)
Q Consensus 143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~ 184 (210)
|.......|+.++|+|+|+|.+|..+|..|...|. ++..+|.
T Consensus 322 ig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~ 364 (989)
T PRK14852 322 VDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADF 364 (989)
T ss_pred cCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcC
Confidence 55445678999999999999999999999998888 5777775
No 302
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=90.24 E-value=0.47 Score=38.90 Aligned_cols=38 Identities=24% Similarity=0.430 Sum_probs=34.1
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.+.+|++.|.| .|.||+++|+.|..-|++|+..+++..
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~ 44 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGG 44 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcc
Confidence 47899999999 789999999999999999999987653
No 303
>PRK06141 ornithine cyclodeaminase; Validated
Probab=90.23 E-value=0.37 Score=41.30 Aligned_cols=36 Identities=14% Similarity=0.045 Sum_probs=29.4
Q ss_pred cccCeEEEEecChHHHHHHHHhc-cCC-CEEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLR-PFG-VKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~-~fg-~~V~~~~~~~ 186 (210)
...++|+|||.|..|+..++.+. .++ -+|..|+|++
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~ 160 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDP 160 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCH
Confidence 35789999999999999998544 355 4799999975
No 304
>PRK06194 hypothetical protein; Provisional
Probab=90.23 E-value=0.41 Score=39.72 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=33.0
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.++++.|.| .|.||+.+|+.|..-|++|+.++++.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~ 40 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQ 40 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 46789999999 68999999999999999999999864
No 305
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=90.21 E-value=0.44 Score=41.73 Aligned_cols=37 Identities=32% Similarity=0.522 Sum_probs=32.9
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~ 188 (210)
..++|+|+|-|..|+.+++.++.+|.+|+.+|..+..
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~G~~v~~~~~~~~~ 47 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRLGVEVIAVDRYANA 47 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 3569999999999999999999999999999987643
No 306
>PRK08589 short chain dehydrogenase; Validated
Probab=90.21 E-value=0.42 Score=39.55 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=33.0
Q ss_pred ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCC
Q 028302 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.+.||++.|.|- |.||+++|+.+..-|++|+..+|+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 478999999995 889999999999999999999887
No 307
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.17 E-value=0.3 Score=42.17 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=31.5
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~ 186 (210)
.|++|.|.|.|.+|+..++.++.+|++ |++.+++.
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~ 211 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDD 211 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 489999999999999999999999995 98887754
No 308
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=90.16 E-value=0.32 Score=46.60 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=31.0
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++|+|||.|.+|..+|..+..-|++|+.+|++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 589999999999999999998899999999875
No 309
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=90.15 E-value=0.34 Score=42.92 Aligned_cols=31 Identities=26% Similarity=0.382 Sum_probs=25.0
Q ss_pred CeEEEEecChHHHHHHHHhc--cC-CCEEEEEcC
Q 028302 154 KTVFILGFGNIGVELAKRLR--PF-GVKIIATKR 184 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~--~f-g~~V~~~~~ 184 (210)
.+|||.|||+||+.+.|.+. .| ..+|.+.+.
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd 94 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAIND 94 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 58999999999999999976 43 468885543
No 310
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=90.11 E-value=0.33 Score=43.76 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=27.9
Q ss_pred cccCeEEEEecChHHHHHHHHhcc-----CCCEEEEEc
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRP-----FGVKIIATK 183 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~-----fg~~V~~~~ 183 (210)
...++|||-|||+||+.++|.+-. -+++|.+..
T Consensus 125 ~~~~~V~InGFGRIGR~v~R~~~~~~~~~~~l~lvAIn 162 (477)
T PRK08289 125 IEPRDVVLYGFGRIGRLLARLLIEKTGGGNGLRLRAIV 162 (477)
T ss_pred CCCceEEEECCCHHHHHHHHHHHhccCCCCCeEEEEEe
Confidence 558899999999999999998642 578988884
No 311
>PRK07478 short chain dehydrogenase; Provisional
Probab=90.11 E-value=0.36 Score=39.28 Aligned_cols=38 Identities=34% Similarity=0.399 Sum_probs=33.7
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
++.+|++.|.| .|.||+++|+.+..-|.+|+..+|+.+
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~ 41 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQA 41 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 46789999999 589999999999999999999988643
No 312
>PRK09242 tropinone reductase; Provisional
Probab=90.09 E-value=0.43 Score=38.87 Aligned_cols=37 Identities=27% Similarity=0.476 Sum_probs=33.5
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.||++.|.| .|.||+.+++++...|++|+..+|+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~ 43 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDA 43 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 47899999999 58999999999999999999998764
No 313
>PRK07035 short chain dehydrogenase; Provisional
Probab=90.09 E-value=0.44 Score=38.63 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=33.9
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.++++.|.| .|.||+++++.+..-|++|+..+|+.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~ 42 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKL 42 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 57899999999 88999999999999999999999864
No 314
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=90.08 E-value=0.24 Score=49.01 Aligned_cols=43 Identities=30% Similarity=0.521 Sum_probs=36.9
Q ss_pred CCCCcccccccCeEEEEecChHHHHHHHHhccCCC------EEEEEcCC
Q 028302 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV------KIIATKRS 185 (210)
Q Consensus 143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~------~V~~~~~~ 185 (210)
|.......|...+|.|||.|.+|.++++-|...|+ ++..+|..
T Consensus 409 ~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D 457 (1008)
T TIGR01408 409 FGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPD 457 (1008)
T ss_pred cCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCC
Confidence 55545678999999999999999999999998887 88888863
No 315
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=90.07 E-value=0.4 Score=41.59 Aligned_cols=35 Identities=26% Similarity=0.494 Sum_probs=31.8
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
.|.+|.|+|.|.||...++.++.+|+ +|++.+++.
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~ 221 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINP 221 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 58999999999999999999999999 699987754
No 316
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=90.06 E-value=0.36 Score=41.34 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=31.1
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
-++|||||.|-+|..+|..+..=|.+|..+|++.
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 4799999999999999999999669999999984
No 317
>PRK07063 short chain dehydrogenase; Provisional
Probab=90.03 E-value=0.45 Score=38.86 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=33.5
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.+|++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~ 41 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDA 41 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 47899999999 68999999999999999999999864
No 318
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.03 E-value=0.46 Score=39.11 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=32.6
Q ss_pred cccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCC
Q 028302 149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 149 ~~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
..+.||++.|.|-+ .||+++|+.+..-|++|+..+|+
T Consensus 4 ~~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~ 43 (260)
T PRK06603 4 GLLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS 43 (260)
T ss_pred cccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc
Confidence 45789999999997 49999999999999999988765
No 319
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.97 E-value=0.34 Score=46.25 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=31.2
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++|+|||.|.+|..+|..+..-|++|+.||++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 689999999999999999999999999999875
No 320
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=89.97 E-value=1.2 Score=42.82 Aligned_cols=66 Identities=18% Similarity=0.217 Sum_probs=53.2
Q ss_pred CcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhccCCC-
Q 028302 99 GIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV- 177 (210)
Q Consensus 99 gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~- 177 (210)
+|++.|- + -+-+|=-+++.+++.+|-. ++.+.+.+|.|.|.|.-|..+|+.+...|.
T Consensus 153 ~ip~f~D-D-----~~GTa~v~lA~l~na~~~~----------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 210 (752)
T PRK07232 153 DIPVFHD-D-----QHGTAIISAAALLNALELV----------------GKKIEDVKIVVSGAGAAAIACLNLLVALGAK 210 (752)
T ss_pred CCCeecc-c-----cchHHHHHHHHHHHHHHHh----------------CCChhhcEEEEECccHHHHHHHHHHHHcCCC
Confidence 5777764 2 2456667777788777743 688999999999999999999999998898
Q ss_pred --EEEEEcCCC
Q 028302 178 --KIIATKRSW 186 (210)
Q Consensus 178 --~V~~~~~~~ 186 (210)
+++.+|+.+
T Consensus 211 ~~~i~~~D~~G 221 (752)
T PRK07232 211 KENIIVCDSKG 221 (752)
T ss_pred cccEEEEcCCC
Confidence 799999864
No 321
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=89.93 E-value=0.44 Score=40.27 Aligned_cols=36 Identities=31% Similarity=0.452 Sum_probs=32.2
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
-.+.+|.|+|.|.+|+.+++.++.+|++|+..+++.
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~ 196 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSP 196 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 446899999999999999999999999999988754
No 322
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=89.93 E-value=6.9 Score=29.52 Aligned_cols=94 Identities=9% Similarity=0.040 Sum_probs=57.2
Q ss_pred CCcceEEEeCCCCCCchhhHHHHhhcCCCeEEecCCCCChhhhcCCceEEEEcC---CCCCHHHHhcCCCceEEEEcccc
Q 028302 10 KNITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVVPISDVPDVIANYHLCVVKT---MRLDSNCISRANQMKLIMQFGVG 86 (210)
Q Consensus 10 ~~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~adv~i~~~---~~~~~~~l~~~p~Lk~i~~~~aG 86 (210)
-...+|++.+....-.......+.+....+........++.+..++||++++.. ..++.+++. |..-++ ..|
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~i~~~~ik--pGa~Vi---dvg 100 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEKVPTEWIK--PGATVI---NCS 100 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCccCHHHcC--CCCEEE---EcC
Confidence 345688888876554444444444554455544333445677889999999743 346777766 443333 666
Q ss_pred CCccchhHHhhCCcEEEecCCC
Q 028302 87 LEGVDINAATRCGIKVARIPGD 108 (210)
Q Consensus 87 ~d~id~~~~~~~gi~v~~~~~~ 108 (210)
.+..+.+.+.++.-.++-+||-
T Consensus 101 ~~~~~~~~~~~~a~~~tPvpgG 122 (140)
T cd05212 101 PTKLSGDDVKESASLYVPMTGG 122 (140)
T ss_pred CCcccchhhHhhceEEcCCCCC
Confidence 6665555677766556666654
No 323
>PRK12367 short chain dehydrogenase; Provisional
Probab=89.89 E-value=0.47 Score=38.97 Aligned_cols=38 Identities=37% Similarity=0.487 Sum_probs=33.9
Q ss_pred cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.|+++.|.|- |.||+++|+.+..-|++|+..+|+.
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~ 48 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSK 48 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCc
Confidence 4578999999995 7899999999999999999998865
No 324
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=89.85 E-value=0.49 Score=40.11 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=33.9
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
.++.++++.|+|.|..+++++-.+...|+ +|..++|+.
T Consensus 120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 45788999999999999999999988898 799999974
No 325
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.84 E-value=0.46 Score=38.14 Aligned_cols=37 Identities=30% Similarity=0.476 Sum_probs=32.7
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEE-cCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIAT-KRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~-~~~~ 186 (210)
++.++++.|+| .|.||+.+|+.+..-|++|+.. +|+.
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~ 40 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE 40 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 47789999999 5999999999999889999988 8764
No 326
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=89.82 E-value=0.36 Score=46.09 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=31.0
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++|+|||.|.+|..+|..+..-|++|+.+|++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 589999999999999999998899999999875
No 327
>PRK07577 short chain dehydrogenase; Provisional
Probab=89.78 E-value=0.53 Score=37.60 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=32.2
Q ss_pred ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWAS 188 (210)
Q Consensus 152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~~ 188 (210)
.++++.|.| .|.||+.+|+.+..-|++|+..+|+..+
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~ 39 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID 39 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 468899999 5899999999999999999999986543
No 328
>PRK05875 short chain dehydrogenase; Provisional
Probab=89.77 E-value=0.46 Score=39.16 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=32.8
Q ss_pred cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+.++++.|.|. |.||+++++.+..-|.+|+.++|+.
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~ 41 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNP 41 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 67899999995 8999999999999999999999864
No 329
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=89.77 E-value=0.47 Score=39.18 Aligned_cols=38 Identities=34% Similarity=0.410 Sum_probs=34.1
Q ss_pred cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.++++.|.|- |.||+++++.|..-|.+|+.++|+.
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~ 44 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQ 44 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4578999999994 8999999999999999999999864
No 330
>PRK13529 malate dehydrogenase; Provisional
Probab=89.76 E-value=2.3 Score=39.41 Aligned_cols=90 Identities=19% Similarity=0.219 Sum_probs=64.7
Q ss_pred CCCceEEEEccccCCc-cchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccc
Q 028302 74 ANQMKLIMQFGVGLEG-VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLL 152 (210)
Q Consensus 74 ~p~Lk~i~~~~aG~d~-id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~ 152 (210)
.|+. +||.==-+..+ +.+..-.+..+++.|- .-+-+|--+++.+|+..|-. +..|.
T Consensus 238 ~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnD------DiQGTaaV~LAgll~A~r~~----------------g~~l~ 294 (563)
T PRK13529 238 FPNA-LLQFEDFAQKNARRILERYRDEICTFND------DIQGTGAVTLAGLLAALKIT----------------GEPLS 294 (563)
T ss_pred CCCe-EEehhhcCCchHHHHHHHhccCCCeecc------ccchHHHHHHHHHHHHHHHh----------------CCChh
Confidence 4664 55544333322 3333333456777763 23667888999999998844 67899
Q ss_pred cCeEEEEecChHHHHHHHHhcc----CCC-------EEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRP----FGV-------KIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~----fg~-------~V~~~~~~~ 186 (210)
+.++.++|.|+.|-.+|+.+.. -|+ +++.+|+.+
T Consensus 295 d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~G 339 (563)
T PRK13529 295 DQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQG 339 (563)
T ss_pred hcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence 9999999999999999999885 577 899999864
No 331
>PLN02240 UDP-glucose 4-epimerase
Probab=89.74 E-value=0.52 Score=40.30 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=32.1
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.+.+++|.|.| .|.||+.+++.|..-|.+|+++++.
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~ 38 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNL 38 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 46789999998 6999999999999889999999864
No 332
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=89.73 E-value=0.43 Score=41.36 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=32.2
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
..|.+|.|+|.|.+|...++.++.+|+ +|++.+++.
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~ 219 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINE 219 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 458999999999999999999999999 699888753
No 333
>PRK06196 oxidoreductase; Provisional
Probab=89.73 E-value=0.47 Score=40.21 Aligned_cols=38 Identities=29% Similarity=0.444 Sum_probs=33.9
Q ss_pred cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.++++.|.|- |.||+++|+.+..-|++|+..+|+.
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~ 60 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRP 60 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3578999999995 8999999999999999999999864
No 334
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=89.70 E-value=0.5 Score=39.99 Aligned_cols=37 Identities=24% Similarity=0.277 Sum_probs=33.1
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
++.++++.|+|.|..|++++--|...|+ +|..++|+.
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 4668999999999999999999999998 688999864
No 335
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=89.70 E-value=0.49 Score=38.57 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=33.4
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
+.++++.|.| .|.||+++|+.|...|++|+..+|...
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~ 41 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPA 41 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 6789999999 699999999999999999999998653
No 336
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=89.66 E-value=0.49 Score=40.75 Aligned_cols=39 Identities=33% Similarity=0.273 Sum_probs=34.9
Q ss_pred ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+++..+++|.|.| .|-||+.+++.|..-|.+|++.+|..
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~ 44 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDP 44 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 5788899999999 79999999999998899999887753
No 337
>PRK12742 oxidoreductase; Provisional
Probab=89.65 E-value=0.53 Score=37.69 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=31.2
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKR 184 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~ 184 (210)
.+.++++.|.| .|.||+++|+.+...|++|+...+
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~ 38 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA 38 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence 47799999999 599999999999999999987754
No 338
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.56 E-value=0.48 Score=39.25 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=31.9
Q ss_pred cccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcCC
Q 028302 151 LLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 151 l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
+.||++.|.|-+ .||+++|+.+..-|++|+..+|+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence 789999999987 59999999999999999988775
No 339
>PRK05872 short chain dehydrogenase; Provisional
Probab=89.52 E-value=0.53 Score=39.59 Aligned_cols=39 Identities=38% Similarity=0.515 Sum_probs=34.7
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
..+.|+++.|.| .|.||+++|+.+..-|++|+..+|+..
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 44 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEA 44 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 468899999999 588999999999999999999988643
No 340
>PRK08226 short chain dehydrogenase; Provisional
Probab=89.51 E-value=0.52 Score=38.47 Aligned_cols=37 Identities=32% Similarity=0.444 Sum_probs=33.5
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.++++.|.| .|.||+.+|+.+..-|.+|+..+|+.
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~ 40 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISP 40 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCH
Confidence 36789999999 88999999999999999999999864
No 341
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=89.49 E-value=0.41 Score=41.61 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=31.6
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
.|.+|.|.|.|.||+..++.++.+|+ +|++.+++.
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~ 226 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNE 226 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCH
Confidence 47899999999999999999999999 699988754
No 342
>PRK05993 short chain dehydrogenase; Provisional
Probab=89.49 E-value=0.49 Score=39.26 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=31.5
Q ss_pred cCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 153 GKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 153 ~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
++++.|.|. |.||+++|+.+..-|.+|+..+|+..
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~ 39 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEE 39 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 678999996 99999999999999999999998753
No 343
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=89.46 E-value=0.5 Score=39.79 Aligned_cols=35 Identities=29% Similarity=0.449 Sum_probs=32.0
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
..|.+|.|.|.|.+|+.+++.++.+|.+|++.+++
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~ 188 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRH 188 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCC
Confidence 45899999999999999999999999999988765
No 344
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=89.43 E-value=0.49 Score=40.28 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=32.1
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.|.+|.|.|.|.+|+.+++.++.+|++|++.+++.
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~ 197 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGS 197 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCh
Confidence 57899999999999999999999999999988753
No 345
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=89.42 E-value=0.5 Score=40.80 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=32.3
Q ss_pred cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
-.|.+|.|.|. |.+|+..++.+|.+|++|++.+++.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~ 193 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS 193 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 35899999998 9999999999999999999987654
No 346
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.40 E-value=0.55 Score=38.66 Aligned_cols=36 Identities=31% Similarity=0.335 Sum_probs=31.4
Q ss_pred ccccCeEEEEe---cChHHHHHHHHhccCCCEEEEEcCC
Q 028302 150 TLLGKTVFILG---FGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 150 ~l~~~tvGIiG---~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.+.||++.|.| -+.||+++|+.+...|++|+..++.
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~ 41 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVV 41 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc
Confidence 37899999999 4589999999999999999887653
No 347
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.36 E-value=0.28 Score=45.90 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=31.8
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
...+.|+|+|++|+.+++.++..|.+++..|+.++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~ 434 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDIS 434 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHH
Confidence 45799999999999999999999999999998753
No 348
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=89.33 E-value=0.54 Score=38.50 Aligned_cols=37 Identities=32% Similarity=0.402 Sum_probs=32.4
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
..+.+|++.|.| .+.||+++|+.+..-|++|+...++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 468899999999 5889999999999999999887553
No 349
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.27 E-value=0.61 Score=41.73 Aligned_cols=36 Identities=25% Similarity=0.491 Sum_probs=31.3
Q ss_pred ccc-CeEEEEecChHHHHHHHHhccC--CCEEEEEcCCC
Q 028302 151 LLG-KTVFILGFGNIGVELAKRLRPF--GVKIIATKRSW 186 (210)
Q Consensus 151 l~~-~tvGIiG~G~IG~~vA~~~~~f--g~~V~~~~~~~ 186 (210)
+.+ +++.|+|+|.+|...++.+... |++|.++|...
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~ 42 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRE 42 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 556 7899999999999999999977 68999999653
No 350
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=89.24 E-value=0.43 Score=45.48 Aligned_cols=33 Identities=27% Similarity=0.215 Sum_probs=30.2
Q ss_pred CeEEEEecChHHHHHHHHhc-cCCCEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~-~fg~~V~~~~~~~ 186 (210)
++|+|||.|.+|..+|..+. .-|++|+.||.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 58999999999999999987 5899999999875
No 351
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.23 E-value=0.52 Score=38.30 Aligned_cols=37 Identities=30% Similarity=0.380 Sum_probs=33.6
Q ss_pred ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.++++.|.|. |.||+.+++.|..-|.+|+..+|.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~ 41 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQ 41 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCh
Confidence 467899999995 9999999999999999999998865
No 352
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.20 E-value=0.53 Score=39.14 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=32.2
Q ss_pred cccccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcCC
Q 028302 149 ETLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 149 ~~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.-+.||++.|.|- +.||+++|+.+..-|++|+...|.
T Consensus 6 ~~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~ 45 (272)
T PRK08159 6 GLMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQG 45 (272)
T ss_pred ccccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc
Confidence 4467899999998 479999999999999999887664
No 353
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=89.19 E-value=0.43 Score=42.78 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.7
Q ss_pred CeEEEEecChHHHHHHHHhc-c--CCCEEEEEcCC
Q 028302 154 KTVFILGFGNIGVELAKRLR-P--FGVKIIATKRS 185 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~-~--fg~~V~~~~~~ 185 (210)
.+|||=|||+|||.+.|.+. . -+++|.+++..
T Consensus 76 ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~ 110 (442)
T PLN02237 76 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS 110 (442)
T ss_pred EEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC
Confidence 69999999999999999854 2 46899988753
No 354
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=89.18 E-value=0.31 Score=45.01 Aligned_cols=34 Identities=21% Similarity=0.556 Sum_probs=31.2
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
-.+-|+|+|++|+.+|+.++..|.+|+.+|+.++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 5789999999999999999999999999998753
No 355
>PRK06720 hypothetical protein; Provisional
Probab=89.10 E-value=0.63 Score=36.15 Aligned_cols=37 Identities=35% Similarity=0.416 Sum_probs=32.7
Q ss_pred ccccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.++++.|.|-+ .||+.+|+.+..-|++|+.++++.
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~ 50 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQ 50 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence 3789999999976 599999999999999999998764
No 356
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.08 E-value=0.53 Score=38.80 Aligned_cols=35 Identities=29% Similarity=0.327 Sum_probs=30.8
Q ss_pred ccccCeEEEEe---cChHHHHHHHHhccCCCEEEEEcC
Q 028302 150 TLLGKTVFILG---FGNIGVELAKRLRPFGVKIIATKR 184 (210)
Q Consensus 150 ~l~~~tvGIiG---~G~IG~~vA~~~~~fg~~V~~~~~ 184 (210)
.+.+|++.|.| -+.||+++|+++..-|++|+..++
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~ 40 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYV 40 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEcc
Confidence 37899999999 468999999999999999988764
No 357
>PRK05854 short chain dehydrogenase; Provisional
Probab=89.04 E-value=0.59 Score=39.73 Aligned_cols=39 Identities=31% Similarity=0.478 Sum_probs=35.0
Q ss_pred ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+++||++.|.| .|.||+++|+.|..-|++|+..+|+.
T Consensus 9 ~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~ 48 (313)
T PRK05854 9 VPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNR 48 (313)
T ss_pred CcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4678999999999 78899999999999999999998864
No 358
>PRK08303 short chain dehydrogenase; Provisional
Probab=88.99 E-value=0.63 Score=39.51 Aligned_cols=38 Identities=29% Similarity=0.375 Sum_probs=33.7
Q ss_pred cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.||++.|.|- +.||+++|+.+..-|++|+..+|+.
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~ 42 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRST 42 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence 4588999999996 5799999999999999999998864
No 359
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=88.97 E-value=0.56 Score=40.01 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=32.1
Q ss_pred cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
-.|.+|.|.|. |.+|+.+++.++.+|++|++..++.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~ 186 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSD 186 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 35899999997 9999999999999999999887654
No 360
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=88.92 E-value=0.57 Score=39.95 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=32.4
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
-.|.++.|.|.|.+|+.++++++.+|++|++++++.
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~ 203 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSP 203 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCH
Confidence 357899999999999999999999999999998764
No 361
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=88.82 E-value=1.3 Score=37.38 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=42.4
Q ss_pred ccccccCeEEEEecChH-HHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEe
Q 028302 148 GETLLGKTVFILGFGNI-GVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGML 200 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~I-G~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~ 200 (210)
+.+|+|+++.|||-++| |+-+|.+|..-+++|.......+. ....++|.++..
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T~~l~~~~k~ADIvv~A 206 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNADIVVVA 206 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCCCCHHHHhhhCCEEEEe
Confidence 56899999999999986 999999999999999999875532 245556655544
No 362
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=88.78 E-value=0.54 Score=38.66 Aligned_cols=35 Identities=23% Similarity=0.501 Sum_probs=31.8
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRS 185 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~ 185 (210)
-.|.++.|.|.|.+|+.+++.++.+|++ |++.+++
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~ 131 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPD 131 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCC
Confidence 3579999999999999999999999999 9998864
No 363
>PRK06139 short chain dehydrogenase; Provisional
Probab=88.77 E-value=0.57 Score=40.35 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=34.2
Q ss_pred cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.++++.|.|. |.||+++|+.+..-|++|+..+|+.
T Consensus 3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~ 41 (330)
T PRK06139 3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDE 41 (330)
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3578999999996 8999999999999999999999864
No 364
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=88.76 E-value=0.66 Score=37.93 Aligned_cols=38 Identities=32% Similarity=0.355 Sum_probs=33.3
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.+|++.|.| -|.||+++|+.+...|++|+...++.
T Consensus 3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~ 41 (261)
T PRK08936 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSD 41 (261)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCC
Confidence 358899999999 78899999999999999998876643
No 365
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.72 E-value=0.46 Score=45.30 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=30.7
Q ss_pred CeEEEEecChHHHHHHHHhc-cCCCEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVELAKRLR-PFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~-~fg~~V~~~~~~~ 186 (210)
++|+|||.|.+|..+|..+. .-|++|..||++.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 68999999999999999988 7799999999875
No 366
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.71 E-value=1.3 Score=41.79 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=34.1
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
..+++|.|||-|..|-..|..|+..|.+|..|++...
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4699999999999999999999999999999997654
No 367
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.67 E-value=0.46 Score=41.15 Aligned_cols=31 Identities=29% Similarity=0.314 Sum_probs=27.0
Q ss_pred CeEEEEecChHHHHHHHHhccCCCEEEEEcCC
Q 028302 154 KTVFILGFGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.+|+|||.|++|..+|..|...| .|..|.++
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~ 38 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRS 38 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCC
Confidence 67999999999999999999888 67777664
No 368
>KOG1687 consensus NADH-ubiquinone oxidoreductase, NUFS7/PSST/20 kDa subunit [Energy production and conversion]
Probab=88.65 E-value=1.8 Score=32.47 Aligned_cols=79 Identities=19% Similarity=0.223 Sum_probs=53.9
Q ss_pred CCceEEEEcC---C---CCCHHHHhcCCCceEEEEccc-----cCCccchhHHh--hCCcEE-EecCCCCCCCchhHHHH
Q 028302 54 ANYHLCVVKT---M---RLDSNCISRANQMKLIMQFGV-----GLEGVDINAAT--RCGIKV-ARIPGDVTGNAASCAEL 119 (210)
Q Consensus 54 ~~adv~i~~~---~---~~~~~~l~~~p~Lk~i~~~~a-----G~d~id~~~~~--~~gi~v-~~~~~~~~~~a~~vAE~ 119 (210)
..+|.+++.+ . +--..+.+++|.-|||.+.|+ |+=|......+ ++=|+| ..+||. .+.||.
T Consensus 70 RQaD~iivAGTlTnKMAPalrkvYdQMPEpr~VisMGsCangGGyyhysYSvvRGcDriiPVDiYvPGC-----PPtaEA 144 (168)
T KOG1687|consen 70 RQADLIIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGC-----PPTAEA 144 (168)
T ss_pred ccccEEEEeccchhhhcHHHHHHHhhCCCCeeEEEecccccCCceEEEEehhhccccceeeeeeecCCC-----CCCHHH
Confidence 4678777632 1 222567888999999987754 55455433332 233555 567887 779999
Q ss_pred HHHHHHHHHhhHHHHHHH
Q 028302 120 TIYLMLGLLRKQNEMRMA 137 (210)
Q Consensus 120 ~l~~~L~~~R~~~~~~~~ 137 (210)
.+..+|-+.+++.+....
T Consensus 145 llygilqLqkKi~R~r~~ 162 (168)
T KOG1687|consen 145 LLYGILQLQKKIKRIRPL 162 (168)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 999999999999865444
No 369
>PTZ00325 malate dehydrogenase; Provisional
Probab=88.64 E-value=0.77 Score=39.60 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=31.0
Q ss_pred cccccCeEEEEec-ChHHHHHHHHhc--cCCCEEEEEcC
Q 028302 149 ETLLGKTVFILGF-GNIGVELAKRLR--PFGVKIIATKR 184 (210)
Q Consensus 149 ~~l~~~tvGIiG~-G~IG~~vA~~~~--~fg~~V~~~~~ 184 (210)
.-++.++|+|+|. |+||..+|-.+. .+.-++..+|.
T Consensus 4 ~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 4 SALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 3467789999999 999999999988 55568999998
No 370
>PRK06182 short chain dehydrogenase; Validated
Probab=88.48 E-value=0.67 Score=38.19 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=31.6
Q ss_pred ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.++++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~ 37 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRV 37 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 478999999 59999999999999999999998864
No 371
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.45 E-value=0.74 Score=39.50 Aligned_cols=34 Identities=15% Similarity=0.272 Sum_probs=28.4
Q ss_pred cCeEEEEecChHHHHHHHHhc--cCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLR--PFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~--~fg~~V~~~~~~~ 186 (210)
..+|+|||.|+||..+|-.+. +..-++..+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 358999999999999999876 5555899999754
No 372
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=88.43 E-value=0.63 Score=39.78 Aligned_cols=37 Identities=24% Similarity=0.194 Sum_probs=33.1
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++.+++|.|.| .|-||+.+++.|..-|.+|++.++..
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~ 40 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRS 40 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeccc
Confidence 46789999999 59999999999999999999998754
No 373
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.38 E-value=0.66 Score=43.75 Aligned_cols=37 Identities=30% Similarity=0.303 Sum_probs=33.9
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
-.|++|.|||.|..|-..|..|+..|.+|..|++...
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~ 361 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE 361 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4799999999999999999999999999999998643
No 374
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=88.32 E-value=0.7 Score=37.92 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=33.2
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.+|++.|.| .|.||+++|+.+...|++|+..+++.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~ 44 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQ 44 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 46889999999 58999999999999999999998765
No 375
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=88.31 E-value=0.7 Score=39.83 Aligned_cols=37 Identities=27% Similarity=0.248 Sum_probs=33.0
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+++++|.|.| .|-||+.+++.|..-|.+|+++|+..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 46679999999 69999999999998899999999854
No 376
>PRK09135 pteridine reductase; Provisional
Probab=88.30 E-value=0.72 Score=37.03 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=32.1
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..++++.|.| .|.||+.+++.+..-|++|+..+|+.
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~ 40 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRS 40 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3568999999 69999999999999999999999863
No 377
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=88.29 E-value=0.65 Score=40.17 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=31.9
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..|.++.|.|.|.+|+.+++.++.+|++|+..+++.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~ 214 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSD 214 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 357899999999999999999999999998887653
No 378
>PRK07985 oxidoreductase; Provisional
Probab=88.29 E-value=0.7 Score=38.88 Aligned_cols=37 Identities=16% Similarity=0.153 Sum_probs=32.8
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.+|++.|.| .|.||+++|+.|...|++|+..+++.
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~ 83 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPV 83 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCc
Confidence 47899999999 68999999999999999999887643
No 379
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=88.28 E-value=0.64 Score=40.56 Aligned_cols=35 Identities=31% Similarity=0.345 Sum_probs=31.5
Q ss_pred ccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+++|.|.|- |-||+.+++.|..-|.+|++++|..
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 5689999995 9999999999999999999999753
No 380
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=88.23 E-value=0.74 Score=37.83 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=30.6
Q ss_pred ccccCeEEEEec---ChHHHHHHHHhccCCCEEEEEcC
Q 028302 150 TLLGKTVFILGF---GNIGVELAKRLRPFGVKIIATKR 184 (210)
Q Consensus 150 ~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~~~~ 184 (210)
++.||++.|.|- +.||+++|+.+..-|++|+...+
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~ 40 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYL 40 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEec
Confidence 478999999997 48999999999999999977654
No 381
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=88.23 E-value=1.6 Score=36.83 Aligned_cols=50 Identities=26% Similarity=0.172 Sum_probs=40.4
Q ss_pred HHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcC
Q 028302 126 GLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKR 184 (210)
Q Consensus 126 ~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~ 184 (210)
+..|++-...++ .+.+|+..|++|+| .|.||..+||-+.+-+++....-|
T Consensus 149 aa~r~Vl~~~~~---------lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r 199 (351)
T COG5322 149 AACRQVLKHFAQ---------LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLR 199 (351)
T ss_pred HHHHHHHHHHHH---------hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecc
Confidence 445665554444 38999999999999 699999999999999998777664
No 382
>PRK08324 short chain dehydrogenase; Validated
Probab=88.17 E-value=0.66 Score=44.00 Aligned_cols=40 Identities=30% Similarity=0.411 Sum_probs=35.7
Q ss_pred ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
...+.|+++.|.| .|.||+.+|+.+...|.+|+..+|+..
T Consensus 417 ~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~ 457 (681)
T PRK08324 417 PKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457 (681)
T ss_pred CcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence 4567899999999 699999999999999999999998753
No 383
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=88.14 E-value=0.65 Score=44.96 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=30.3
Q ss_pred CeEEEEecChHHHHH-HHHhccCCCEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVEL-AKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~v-A~~~~~fg~~V~~~~~~~ 186 (210)
+++.|+|+|.+|... |+.|+..|.+|.++|...
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~ 38 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSE 38 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCC
Confidence 469999999999998 999999999999999754
No 384
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.14 E-value=0.84 Score=36.67 Aligned_cols=37 Identities=32% Similarity=0.337 Sum_probs=33.0
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.++++.|.| .|.||+.+++.|..-|++|+..+|+.
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~ 41 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTE 41 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 46789999999 77999999999999999999999865
No 385
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=88.14 E-value=0.72 Score=37.57 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=33.5
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.++++.|.| .|.||+.+++.+..-|++|+..+++.
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~ 45 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA 45 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCH
Confidence 47799999999 78999999999999999999988764
No 386
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=88.09 E-value=0.66 Score=38.62 Aligned_cols=36 Identities=33% Similarity=0.445 Sum_probs=31.9
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~ 186 (210)
-.|.+|.|.|.|.+|+.++++++.+|++ |++.+++.
T Consensus 128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~ 164 (312)
T cd08269 128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRP 164 (312)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence 3579999999999999999999999999 88877653
No 387
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=88.05 E-value=1.2 Score=40.00 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=33.0
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
...|++|.|||-|.+|-.+|+.+..+|.+|..+.+..
T Consensus 269 ~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 269 VYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 3568999999999999999999999999998887653
No 388
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=88.03 E-value=0.68 Score=39.81 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.9
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
.|++|.|.|.|.+|+.+++.++.+|+ +|++.+++.
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~ 212 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSP 212 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 68999999999999999999999999 999887643
No 389
>PRK06180 short chain dehydrogenase; Provisional
Probab=88.01 E-value=0.66 Score=38.40 Aligned_cols=35 Identities=31% Similarity=0.303 Sum_probs=31.3
Q ss_pred ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.++++.|.| .|.||+++++.|..-|++|+..+|+.
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~ 38 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSE 38 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCH
Confidence 368899999 59999999999999999999999864
No 390
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=87.98 E-value=0.67 Score=41.32 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=31.4
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+++|.|||-|.+|-++|..++.+|.+|..+++..
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~ 190 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS 190 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 5799999999999999999999999999998754
No 391
>PRK06914 short chain dehydrogenase; Provisional
Probab=87.98 E-value=0.65 Score=38.36 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=31.8
Q ss_pred ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.++++.|.| .|.||+.+++.+..-|++|+.++|+..
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~ 38 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPE 38 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 568899998 699999999999999999999988653
No 392
>PRK06701 short chain dehydrogenase; Provisional
Probab=87.93 E-value=0.76 Score=38.57 Aligned_cols=38 Identities=26% Similarity=0.230 Sum_probs=34.1
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.++++.|.| .|.||.++|+.+..-|++|+.++++.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~ 80 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDE 80 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 467899999999 68899999999999999999998864
No 393
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=87.89 E-value=0.67 Score=39.16 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=31.4
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~ 186 (210)
..|.+|.|+|.|.+|+.+++.++++|++ |++.+++.
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~ 194 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNE 194 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH
Confidence 3578999999999999999999999998 78777653
No 394
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=87.85 E-value=0.7 Score=40.16 Aligned_cols=35 Identities=31% Similarity=0.451 Sum_probs=30.3
Q ss_pred cCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSWA 187 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~~ 187 (210)
+.++.|+|.|.||...+..++.+|+ +|+..|++..
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~ 204 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE 204 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence 3399999999999999999999997 6778887653
No 395
>PRK07904 short chain dehydrogenase; Provisional
Probab=87.70 E-value=0.82 Score=37.49 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=31.4
Q ss_pred ccCeEEEEe-cChHHHHHHHHhccC-CCEEEEEcCCCCC
Q 028302 152 LGKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSWAS 188 (210)
Q Consensus 152 ~~~tvGIiG-~G~IG~~vA~~~~~f-g~~V~~~~~~~~~ 188 (210)
.++++.|.| .|.||+++|+.+..- |++|+.++|+..+
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~ 45 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDP 45 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcch
Confidence 467899998 789999999998877 4999999987653
No 396
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.69 E-value=0.71 Score=42.87 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=33.1
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..-.|+++.|.| .|.||+.+++.|...|++|++++|..
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ 114 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA 114 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 345688999999 59999999999999999999998864
No 397
>PRK07877 hypothetical protein; Provisional
Probab=87.68 E-value=0.46 Score=45.34 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=34.8
Q ss_pred CCCCcccccccCeEEEEecChHHHHHHHHhccCCC--EEEEEcCC
Q 028302 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV--KIIATKRS 185 (210)
Q Consensus 143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~--~V~~~~~~ 185 (210)
|.......|++++|+|+|+| +|..+|..|..-|. +++.+|.-
T Consensus 97 ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D 140 (722)
T PRK07877 97 ITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFD 140 (722)
T ss_pred CCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCC
Confidence 33345678999999999999 99999999998884 78888863
No 398
>PRK10637 cysG siroheme synthase; Provisional
Probab=87.66 E-value=0.69 Score=41.79 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=37.0
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 189 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~ 189 (210)
.-+|+|++|.|||-|.++..=++.|..+|++|..+++...++
T Consensus 7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~ 48 (457)
T PRK10637 7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQ 48 (457)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHH
Confidence 357999999999999999999999999999999998865443
No 399
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=87.59 E-value=0.83 Score=40.69 Aligned_cols=39 Identities=36% Similarity=0.501 Sum_probs=34.4
Q ss_pred ccccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 148 GETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
...++||++.|.|- |.||+++|+.+..-|++|+..+|+.
T Consensus 173 a~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~ 212 (406)
T PRK07424 173 ALSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNS 212 (406)
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34678999999994 8999999999999999999998764
No 400
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=87.59 E-value=4.5 Score=35.12 Aligned_cols=93 Identities=16% Similarity=0.092 Sum_probs=56.6
Q ss_pred HHHHhcCCCceEEEEccccCC------ccchh-HHhhCCcEEEecCCCCCCCc-hhHHHHHHHHHHHHHhhHHHHHHHHH
Q 028302 68 SNCISRANQMKLIMQFGVGLE------GVDIN-AATRCGIKVARIPGDVTGNA-ASCAELTIYLMLGLLRKQNEMRMAIE 139 (210)
Q Consensus 68 ~~~l~~~p~Lk~i~~~~aG~d------~id~~-~~~~~gi~v~~~~~~~~~~a-~~vAE~~l~~~L~~~R~~~~~~~~~~ 139 (210)
..+++++.++-.+-....|++ +-.+. .+...+|+|.|..+. . |. +..++ ++.+.+.+
T Consensus 99 arvls~~~D~iv~R~~~~g~~~~~~~~~~~~~~~a~~s~vPVINa~~~-~-HPtQaLaD-----l~Ti~e~~-------- 163 (335)
T PRK04523 99 ARVLSRYVDLIGVRAFPKFVDWSKDRQDQVLNSFAKYSTVPVINMETI-T-HPCQELAH-----ALALQEHF-------- 163 (335)
T ss_pred HHHHHHhCcEEEEeCCccccccccchhHHHHHHHHHhCCCCEEECCCC-C-ChHHHHHH-----HHHHHHHh--------
Confidence 445666655444444455554 11222 234458999998654 2 32 23333 22222221
Q ss_pred hCCCCCCccccc-ccCeEEEEecC-------hHHHHHHHHhccCCCEEEEEcC
Q 028302 140 QKKLGVPTGETL-LGKTVFILGFG-------NIGVELAKRLRPFGVKIIATKR 184 (210)
Q Consensus 140 ~~~w~~~~~~~l-~~~tvGIiG~G-------~IG~~vA~~~~~fg~~V~~~~~ 184 (210)
+ .+ .|++|+|++.| ++.+..+..+..|||+|....|
T Consensus 164 --------g-~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P 207 (335)
T PRK04523 164 --------G-TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCP 207 (335)
T ss_pred --------C-CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECC
Confidence 2 36 79999887754 6788888889999999999988
No 401
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=87.58 E-value=0.81 Score=36.97 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=33.2
Q ss_pred ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++.+|++.|.|- |.||+.+++.+..-|.+|+..+++.
T Consensus 5 ~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 5 DFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence 478899999995 7899999999999999999998865
No 402
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=87.56 E-value=0.44 Score=39.14 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=32.8
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..-+.|+|+|.|-.|.-+|+.+..-|.+|..+|++.
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 445789999999999999999999999999999875
No 403
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=87.54 E-value=0.7 Score=39.55 Aligned_cols=35 Identities=31% Similarity=0.439 Sum_probs=31.1
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~ 186 (210)
.|++|.|.|.|.+|+..++.++.+|.+ |++.+++.
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~ 195 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS 195 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence 579999999999999999999999997 67787654
No 404
>PRK06179 short chain dehydrogenase; Provisional
Probab=87.52 E-value=0.75 Score=37.74 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=31.3
Q ss_pred ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.++++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~ 38 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNP 38 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 357899999 79999999999999999999999874
No 405
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=87.48 E-value=0.88 Score=38.54 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=34.7
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
....|+++.|+|.|..+++++--|+..|+ +|..++|+.
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~ 160 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTR 160 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 45689999999999999999999999996 799999975
No 406
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=87.47 E-value=0.79 Score=38.81 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=31.5
Q ss_pred ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.|.+|.|.| .|.+|+.+++.++.+|++|++.+++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~ 173 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSD 173 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 589999999 59999999999999999999887653
No 407
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.41 E-value=0.72 Score=39.74 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=31.7
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
=.|.++.|+|.|.||-..-.-+|+||+ +|+..|-..
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~ 204 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA 204 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH
Confidence 458999999999999999999999999 688887654
No 408
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.30 E-value=0.91 Score=36.64 Aligned_cols=34 Identities=18% Similarity=0.417 Sum_probs=30.0
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKR 184 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~ 184 (210)
+.++++.|.| .|.||+++|+++...|++|+...+
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 5689999999 889999999999999999987544
No 409
>PRK12831 putative oxidoreductase; Provisional
Probab=87.25 E-value=0.8 Score=41.41 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=32.7
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..|++|.|||-|++|-.+|+.+..+|.+|..+.+..
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 578999999999999999999999999998887644
No 410
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=87.18 E-value=0.95 Score=36.29 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=32.6
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+++++++.|.| .|.||+++++.+..-|..|...+++.
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~ 40 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRV 40 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCH
Confidence 46789999999 79999999999999999998887653
No 411
>PLN02827 Alcohol dehydrogenase-like
Probab=87.15 E-value=0.83 Score=39.94 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=31.4
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~ 186 (210)
-.|.+|.|+|.|.||...++.++.+|++ |++.+++.
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~ 228 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINP 228 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH
Confidence 3589999999999999999999999995 88887543
No 412
>PRK12827 short chain dehydrogenase; Provisional
Probab=87.12 E-value=0.99 Score=36.21 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=31.9
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.+.++++.|.| .|.||+.+|+.+...|.+|+..++.
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~ 39 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIH 39 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCc
Confidence 36789999999 7999999999999999999997764
No 413
>PRK07454 short chain dehydrogenase; Provisional
Probab=87.11 E-value=0.9 Score=36.54 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=32.0
Q ss_pred ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.+|++.|.| .|.||+.+++.|..-|++|+..+|+.+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~ 41 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQD 41 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 468999999 599999999999999999999998754
No 414
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=86.95 E-value=0.82 Score=38.42 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=31.4
Q ss_pred ccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+++|.|+|. |.+|+.+++.++.+|++|+..+++.
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~ 181 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKA 181 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCH
Confidence 3689999998 9999999999999999999887654
No 415
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=86.94 E-value=4 Score=37.82 Aligned_cols=163 Identities=21% Similarity=0.199 Sum_probs=87.8
Q ss_pred CCCcceEEEeCCCCCCchhhHHHHhhcCCCeEEe-cCCCC--ChhhhcCCceEEEEcCCCCCHHHHhcCC-CceEEEEcc
Q 028302 9 DKNITRVLFCGPHFPASHNYTKEYLQNYPSIQVD-VVPIS--DVPDVIANYHLCVVKTMRLDSNCISRAN-QMKLIMQFG 84 (210)
Q Consensus 9 ~~~~~~ili~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~--~~~~~~~~adv~i~~~~~~~~~~l~~~p-~Lk~i~~~~ 84 (210)
..+.+++++.+.... ....+++..+ .++.... ..|.+ ..-..+.+ +-+.+... -.+++++.. ..-+|..++
T Consensus 113 ~~~~~r~lIiGAG~a-g~~l~r~~~~-~~~~~pV~fiDdd~~~~g~~i~G--v~V~g~~~-i~~~v~~~~~~~iiiAips 187 (588)
T COG1086 113 KDNRIRLLIIGAGSA-GDLLLRALRR-DPEYTPVAFLDDDPDLTGMKIRG--VPVLGRIE-IERVVEELGIQLILIAIPS 187 (588)
T ss_pred ccCCCceEEEcCchH-HHHHHHHHHh-CCCcceEEEECCChhhcCCEEec--eeeechhH-HHHHHHHcCCceEEEecCC
Confidence 345678888887643 2344444443 3332221 22222 11122222 22222223 455666543 544566666
Q ss_pred ccCCcc--chhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCC--CCcccccccCeEEEEe
Q 028302 85 VGLEGV--DINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLG--VPTGETLLGKTVFILG 160 (210)
Q Consensus 85 aG~d~i--d~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~--~~~~~~l~~~tvGIiG 160 (210)
+.-+.. -+..+.+.|+.|-..|.. ..+.+ ...-+|++.--+-.-|+..-. ......+.||||.|-|
T Consensus 188 ~~~~~~~~i~~~l~~~~~~v~~lP~~-----~~l~~-----~~~~lreI~ieDLLgR~pV~~d~~~i~~~~~gK~vLVTG 257 (588)
T COG1086 188 ASQEERRRILLRLARTGIAVRILPQL-----TDLKD-----LNGQLREIEIEDLLGRPPVALDTELIGAMLTGKTVLVTG 257 (588)
T ss_pred CCHHHHHHHHHHHHhcCCcEEecCcH-----HHHHH-----hccccccCCHHHHhCCCCCCCCHHHHHhHcCCCEEEEeC
Confidence 654321 245577788888877664 33333 222244442222111111100 1134679999999999
Q ss_pred -cChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 161 -FGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 161 -~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
-|+||+++.+....++. +++.+|++.
T Consensus 258 agGSiGsel~~qil~~~p~~i~l~~~~E 285 (588)
T COG1086 258 GGGSIGSELCRQILKFNPKEIILFSRDE 285 (588)
T ss_pred CCCcHHHHHHHHHHhcCCCEEEEecCch
Confidence 78999999999999999 588888865
No 416
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=86.93 E-value=0.82 Score=38.38 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=31.2
Q ss_pred ccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.|++|.|.|. |.+|+.+++.++.+|++|+..+.++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~ 181 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRP 181 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4689999997 9999999999999999999886544
No 417
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=86.91 E-value=0.91 Score=41.06 Aligned_cols=37 Identities=30% Similarity=0.410 Sum_probs=33.7
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
-.+++|.|||-|.+|-..|..|+..|.+|..|++.+.
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 4789999999999999999999999999999987653
No 418
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.88 E-value=0.95 Score=36.82 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=31.6
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.+.+|++.|.| .|.||+++|+.+...|.+|+..+++
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~ 40 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNS 40 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 46789999999 6999999999999999999887554
No 419
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=86.88 E-value=6.5 Score=34.47 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=29.8
Q ss_pred ccccCeEEEEecC--------hHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGFG--------NIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~G--------~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.|.|+||+|+|.| ++.+..+..+..|||+|....|..
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~ 211 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEG 211 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCc
Confidence 4889999999854 344677778889999999998853
No 420
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=86.87 E-value=0.92 Score=38.39 Aligned_cols=35 Identities=37% Similarity=0.258 Sum_probs=30.6
Q ss_pred ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+|++.|.| .|-||+.++++|..-|.+|++.+|..
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 378999999 69999999999999999998876654
No 421
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=86.85 E-value=0.89 Score=38.73 Aligned_cols=35 Identities=23% Similarity=0.355 Sum_probs=31.8
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+++|.|.|.|.+|+.+++.++.+|++|+..+++.
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~ 199 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDD 199 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 57899999999999999999999999999887653
No 422
>PRK07340 ornithine cyclodeaminase; Validated
Probab=86.84 E-value=0.98 Score=38.55 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=30.6
Q ss_pred cccCeEEEEecChHHHHHHHHhc-cCCC-EEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~-~fg~-~V~~~~~~~ 186 (210)
...++++|+|.|.+|+..++.+. .++. +|..|+|+.
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~ 160 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTA 160 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCH
Confidence 45789999999999999999986 4665 699999974
No 423
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=86.78 E-value=0.99 Score=38.31 Aligned_cols=37 Identities=30% Similarity=0.296 Sum_probs=33.0
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.++++.|.| .|.||+++|+.|..-|.+|+..+|+.
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~ 40 (322)
T PRK07453 3 QDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNL 40 (322)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCH
Confidence 46789999999 68999999999999999999998864
No 424
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=86.73 E-value=0.58 Score=46.35 Aligned_cols=43 Identities=30% Similarity=0.483 Sum_probs=38.0
Q ss_pred CCCCcccccccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 143 LGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 143 w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
|.......|+..+|.|+|+|.+|.++|+-+...|. +|..+|..
T Consensus 14 ~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d 57 (1008)
T TIGR01408 14 LGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTE 57 (1008)
T ss_pred cCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 66555678999999999999999999999999999 68888875
No 425
>PRK12744 short chain dehydrogenase; Provisional
Probab=86.68 E-value=1.1 Score=36.59 Aligned_cols=36 Identities=36% Similarity=0.502 Sum_probs=31.1
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.+.++++.|.| .|.||+++|+.+...|++|+..+++
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~ 41 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYN 41 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecC
Confidence 47789999999 8899999999999999997776543
No 426
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=86.67 E-value=0.92 Score=36.56 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=31.0
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKR 184 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~ 184 (210)
.+.++++.|.| .|.||+.+|+++...|++|+...+
T Consensus 3 ~~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~ 38 (247)
T PRK12935 3 QLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYN 38 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcC
Confidence 36789999999 899999999999999999987654
No 427
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=86.67 E-value=1.2 Score=42.18 Aligned_cols=40 Identities=30% Similarity=0.498 Sum_probs=35.8
Q ss_pred cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
....+.+|++.|.| .|.||+++|+.|..-|++|+..+++.
T Consensus 408 ~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~ 448 (676)
T TIGR02632 408 KEKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNL 448 (676)
T ss_pred CCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 44678999999999 58999999999999999999999864
No 428
>PRK07109 short chain dehydrogenase; Provisional
Probab=86.65 E-value=1 Score=38.79 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=33.9
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.++++.|.| .|.||+++|+.+..-|++|+..+|+.
T Consensus 4 ~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~ 42 (334)
T PRK07109 4 KPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGE 42 (334)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 457889999999 59999999999999999999999864
No 429
>PLN02214 cinnamoyl-CoA reductase
Probab=86.63 E-value=0.98 Score=38.89 Aligned_cols=38 Identities=32% Similarity=0.295 Sum_probs=33.5
Q ss_pred ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.+.+++|.|.|- |-||+.+++.|..-|.+|++.+|...
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~ 45 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPD 45 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCch
Confidence 467899999996 99999999999999999999988643
No 430
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=86.63 E-value=0.93 Score=38.57 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=30.7
Q ss_pred cCeEEEEec-ChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 153 GKTVFILGF-GNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~-G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
|.+|.|.|. |.+|+..++.++.+|+ +|++.+++.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~ 190 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSD 190 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence 489999997 9999999999999999 799987654
No 431
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=86.61 E-value=0.95 Score=40.03 Aligned_cols=37 Identities=32% Similarity=0.504 Sum_probs=33.2
Q ss_pred cccCeEEEEecC----------hHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 151 LLGKTVFILGFG----------NIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 151 l~~~tvGIiG~G----------~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
|.||||||+|+- +-...++++|+..|++|++|||-..
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~ 354 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAM 354 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhh
Confidence 889999999984 6678999999999999999999654
No 432
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=86.60 E-value=2.3 Score=39.54 Aligned_cols=68 Identities=19% Similarity=0.261 Sum_probs=54.6
Q ss_pred hCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCcccccccCeEEEEecChHHHHHHHHhcc--
Q 028302 97 RCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRP-- 174 (210)
Q Consensus 97 ~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l~~~tvGIiG~G~IG~~vA~~~~~-- 174 (210)
+..+++.|- .-+-+|=-+++.+|+..|-. +..|.+.+|.++|.|+-|..+|+.+..
T Consensus 287 r~~i~~FnD------DiQGTaaV~lAgll~A~r~~----------------g~~l~d~riv~~GAGsAgigia~ll~~~~ 344 (581)
T PLN03129 287 RTTHLCFND------DIQGTAAVALAGLLAALRAT----------------GGDLADQRILFAGAGEAGTGIAELIALAM 344 (581)
T ss_pred ccCCCEecc------ccchHHHHHHHHHHHHHHHh----------------CCchhhceEEEECCCHHHHHHHHHHHHHH
Confidence 346777663 23667888899999988844 678999999999999999999999886
Q ss_pred ---CCC-------EEEEEcCCC
Q 028302 175 ---FGV-------KIIATKRSW 186 (210)
Q Consensus 175 ---fg~-------~V~~~~~~~ 186 (210)
.|+ +++.+|+.+
T Consensus 345 ~~~~Gls~eeA~~~i~~vD~~G 366 (581)
T PLN03129 345 SRQTGISEEEARKRIWLVDSKG 366 (581)
T ss_pred HhhcCCChhhhcCcEEEEcCCC
Confidence 466 788888864
No 433
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=86.54 E-value=0.92 Score=41.00 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=31.5
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+++|.|||-|.+|-++|..++.+|.+|..+++..
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 6899999999999999999999999999998754
No 434
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=86.53 E-value=0.99 Score=38.52 Aligned_cols=33 Identities=36% Similarity=0.540 Sum_probs=30.9
Q ss_pred cccccCeEEEEec---ChHHHHHHHHhccCCCEEEE
Q 028302 149 ETLLGKTVFILGF---GNIGVELAKRLRPFGVKIIA 181 (210)
Q Consensus 149 ~~l~~~tvGIiG~---G~IG~~vA~~~~~fg~~V~~ 181 (210)
.+|.||++.|-|- ..||.++|+.+..-|++|+.
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 4599999999999 77999999999999999988
No 435
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=86.49 E-value=2.2 Score=38.52 Aligned_cols=38 Identities=29% Similarity=0.373 Sum_probs=34.3
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
.-.+++|.|||.|..|-..|..|+..|.+|..|++.+.
T Consensus 140 ~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~ 177 (471)
T PRK12810 140 KRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADR 177 (471)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 35789999999999999999999999999999998654
No 436
>PLN02427 UDP-apiose/xylose synthase
Probab=86.48 E-value=1 Score=39.34 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=33.7
Q ss_pred ccccccCeEEEEe-cChHHHHHHHHhccC-CCEEEEEcCCC
Q 028302 148 GETLLGKTVFILG-FGNIGVELAKRLRPF-GVKIIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~f-g~~V~~~~~~~ 186 (210)
++.+..++|.|.| .|-||+.+++.|..- |.+|+++|++.
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~ 49 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYN 49 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCc
Confidence 5667788999999 699999999999877 58999999753
No 437
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.45 E-value=1.3 Score=39.54 Aligned_cols=38 Identities=24% Similarity=0.368 Sum_probs=34.0
Q ss_pred cccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..+.|+++.|.|- |.||+.+|+.+...|++|+..++..
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~ 244 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPA 244 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4578999999996 9999999999999999999998743
No 438
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=86.40 E-value=0.71 Score=39.66 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=30.5
Q ss_pred ccCeEEEEecChHHHHHHHHhcc-CC-CEEEEEcCCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRP-FG-VKIIATKRSWA 187 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~-fg-~~V~~~~~~~~ 187 (210)
.|.+|.|+|.|.||...++.++. +| .+|++++++..
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~ 200 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQE 200 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHh
Confidence 48899999999999999998885 64 68999987653
No 439
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=86.38 E-value=0.96 Score=39.87 Aligned_cols=39 Identities=26% Similarity=0.358 Sum_probs=34.6
Q ss_pred ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.....+++|.|.| .|.||+.+++.|..-|.+|++++|..
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 4567889999999 59999999999998899999999864
No 440
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=86.33 E-value=1 Score=35.97 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=31.3
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
+.++++.|.| .|.||+.+++.+..-|.+|+...++..
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~ 40 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSE 40 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCch
Confidence 5678999999 699999999999988999977666543
No 441
>PRK12831 putative oxidoreductase; Provisional
Probab=86.32 E-value=2.5 Score=38.22 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=34.2
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
..-.+++|.|||-|..|-..|..|+..|.+|..+++..
T Consensus 136 ~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 136 EEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 34579999999999999999999999999999998754
No 442
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=86.24 E-value=0.98 Score=38.57 Aligned_cols=36 Identities=31% Similarity=0.350 Sum_probs=30.8
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCC--CEEEEEcCCC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFG--VKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg--~~V~~~~~~~ 186 (210)
+.|+++.|.| .|.||+.+++.|..-| .+|+.++|..
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~ 40 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDE 40 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCCh
Confidence 5689999999 6999999999998765 7899998754
No 443
>PLN00106 malate dehydrogenase
Probab=86.20 E-value=1.2 Score=38.39 Aligned_cols=35 Identities=26% Similarity=0.336 Sum_probs=29.3
Q ss_pred ccCeEEEEec-ChHHHHHHHHhc--cCCCEEEEEcCCC
Q 028302 152 LGKTVFILGF-GNIGVELAKRLR--PFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~-G~IG~~vA~~~~--~fg~~V~~~~~~~ 186 (210)
..++|+|+|. |+||..+|-.+. .+.-++..+|...
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 3469999999 999999999988 4545899999755
No 444
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=86.18 E-value=1 Score=37.89 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=31.4
Q ss_pred ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.|.+|.|.| .|.+|+.+++.++.+|++|++.+++.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~ 178 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSD 178 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 589999999 69999999999999999999887653
No 445
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=86.04 E-value=1 Score=42.56 Aligned_cols=37 Identities=27% Similarity=0.244 Sum_probs=33.8
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
-.+++|.|||.|..|-..|..|+..|.+|..+++...
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4689999999999999999999999999999998654
No 446
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.95 E-value=1.2 Score=37.74 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=34.3
Q ss_pred ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
...+.||++.|.| .|.||+++|+.|..-|++|+..++..
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~ 46 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVAS 46 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCc
Confidence 3568999999999 57899999999999999999998753
No 447
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=85.95 E-value=1.1 Score=38.41 Aligned_cols=36 Identities=36% Similarity=0.479 Sum_probs=31.9
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
-.|++|.|.|.|.+|+..++.++.+|+ +|++.+++.
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~ 207 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSE 207 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 357899999999999999999999999 788887643
No 448
>PRK06128 oxidoreductase; Provisional
Probab=85.87 E-value=1.1 Score=37.64 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=31.7
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.+.||++.|.| .|.||+++|+.+..-|++|+...+.
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 47899999999 5999999999999999999876553
No 449
>PLN02602 lactate dehydrogenase
Probab=85.83 E-value=1.3 Score=38.68 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=28.2
Q ss_pred CeEEEEecChHHHHHHHHhc--cCCCEEEEEcCCC
Q 028302 154 KTVFILGFGNIGVELAKRLR--PFGVKIIATKRSW 186 (210)
Q Consensus 154 ~tvGIiG~G~IG~~vA~~~~--~fg~~V~~~~~~~ 186 (210)
++|+|||.|+||..+|-.+. ++.-++..+|...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 69999999999999999877 4444799999754
No 450
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=85.80 E-value=1.2 Score=40.98 Aligned_cols=39 Identities=31% Similarity=0.458 Sum_probs=33.8
Q ss_pred ccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 148 GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
....+||+|.|||.|+-|..+|.-+....-+|+..-|++
T Consensus 178 ~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 178 PEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp GGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred hhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 467899999999999999999999999888988877764
No 451
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=85.76 E-value=2 Score=38.64 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=34.8
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
....+++|.|||-|..|-..|..|+..|.+|..+++...
T Consensus 129 ~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~ 167 (449)
T TIGR01316 129 APSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK 167 (449)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 345789999999999999999999999999999998654
No 452
>PLN02572 UDP-sulfoquinovose synthase
Probab=85.61 E-value=1.1 Score=40.29 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=34.1
Q ss_pred cccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcC
Q 028302 147 TGETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKR 184 (210)
Q Consensus 147 ~~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~ 184 (210)
....+.+++|.|.| .|-||+.+++.|..-|.+|+++|+
T Consensus 41 ~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~ 79 (442)
T PLN02572 41 SSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDN 79 (442)
T ss_pred CCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEec
Confidence 34678899999999 699999999999999999999875
No 453
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=85.60 E-value=1.4 Score=39.15 Aligned_cols=40 Identities=30% Similarity=0.407 Sum_probs=35.4
Q ss_pred cccccCeEEEEec----------ChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302 149 ETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSWAS 188 (210)
Q Consensus 149 ~~l~~~tvGIiG~----------G~IG~~vA~~~~~fg~~V~~~~~~~~~ 188 (210)
..+.+++|+|+|+ .+-...+++.|...|++|.+|||...+
T Consensus 309 ~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~ 358 (411)
T TIGR03026 309 GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPE 358 (411)
T ss_pred hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCCh
Confidence 3689999999998 568899999999999999999997543
No 454
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=85.60 E-value=1.1 Score=39.33 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=31.7
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.++++.|||-|.+|-++|..|+.+|.+|..+.+..
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 36899999999999999999999999999988754
No 455
>PRK07791 short chain dehydrogenase; Provisional
Probab=85.51 E-value=1.2 Score=37.27 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=32.1
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+.||++.|.| .+.||+++|+.+...|++|+..+++.
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~ 40 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGV 40 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCc
Confidence 6789999999 67999999999999999999987653
No 456
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=85.49 E-value=1.1 Score=40.17 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=31.9
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++++.|||-|.+|-++|..++.+|.+|..+++..
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~ 208 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD 208 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 6899999999999999999999999999998764
No 457
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=85.45 E-value=1.1 Score=40.04 Aligned_cols=35 Identities=23% Similarity=0.277 Sum_probs=32.0
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.++++.|||-|.||-++|..++.+|.+|..+++..
T Consensus 147 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 147 QVDKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 35899999999999999999999999999998764
No 458
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=85.42 E-value=5.8 Score=34.07 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=33.3
Q ss_pred ccccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.|+||++||- +++....+..+..|||+|....|..
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~ 187 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIA 187 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCC
Confidence 488999999996 7899999999999999999999854
No 459
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=85.40 E-value=1.2 Score=38.88 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=32.1
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
-.|.+|.|.|.|.+|..+++.++.+|. +|++.+++.
T Consensus 189 ~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~ 225 (373)
T cd08299 189 TPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINK 225 (373)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 458899999999999999999999999 799988653
No 460
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=85.37 E-value=6.6 Score=36.39 Aligned_cols=91 Identities=11% Similarity=0.129 Sum_probs=63.4
Q ss_pred cCCCceEEEEccccCCc-cchhHHhhCCcEEEecCCCCCCCchhHHHHHHHHHHHHHhhHHHHHHHHHhCCCCCCccccc
Q 028302 73 RANQMKLIMQFGVGLEG-VDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPTGETL 151 (210)
Q Consensus 73 ~~p~Lk~i~~~~aG~d~-id~~~~~~~gi~v~~~~~~~~~~a~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~l 151 (210)
..|+ -+||.==-+.++ +.+..-.+..+++.|- .-+-+|-.+++.+|+..|-. +..|
T Consensus 239 ~~P~-~~Iq~EDf~~~naf~iL~kyr~~i~~FnD------DiQGTaaV~lAgll~Alr~~----------------g~~l 295 (559)
T PTZ00317 239 RWPN-AVVQFEDFSNNHCFDLLERYQNKYRCFND------DIQGTGAVIAAGFLNALKLS----------------GVPP 295 (559)
T ss_pred hCCC-eEEehhhcCCccHHHHHHHhccCCCEecc------cchhHHHHHHHHHHHHHHHh----------------CCCh
Confidence 3566 255543333322 3332223345777663 23667888999999999844 6789
Q ss_pred ccCeEEEEecChHHHHHHHHhcc----CCC-------EEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRP----FGV-------KIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~----fg~-------~V~~~~~~~ 186 (210)
.+.++.++|.|+-|-.+|+.+.. -|. +++.+|+.+
T Consensus 296 ~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~G 341 (559)
T PTZ00317 296 EEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKG 341 (559)
T ss_pred hhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence 99999999999999999999863 577 899999864
No 461
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=85.36 E-value=1.2 Score=38.72 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=31.3
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
..|.+|.|.|.|.+|+.+++.++++|. +|++.++.
T Consensus 175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~ 210 (375)
T cd08282 175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHV 210 (375)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 358999999999999999999999998 79888764
No 462
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=85.32 E-value=2.2 Score=38.63 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=38.5
Q ss_pred cccccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCCC
Q 028302 147 TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASH 189 (210)
Q Consensus 147 ~~~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~~ 189 (210)
.....++++|+|||-|.-|-+.|..|...|-.|+.|.+.++..
T Consensus 117 ~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~G 159 (457)
T COG0493 117 LPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDG 159 (457)
T ss_pred CCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCc
Confidence 4457788999999999999999999999999999999987654
No 463
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=85.23 E-value=1.3 Score=35.60 Aligned_cols=33 Identities=27% Similarity=0.590 Sum_probs=29.3
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEc
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATK 183 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~ 183 (210)
+.+|++.|.| .|.||+.+|+.+..-|.+|+...
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~ 34 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGC 34 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEc
Confidence 4679999999 69999999999999999988854
No 464
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=84.99 E-value=5.7 Score=34.47 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=31.6
Q ss_pred ccccCeEEEEecC--hHHHHHHHHhccCCCEEEEEcCC
Q 028302 150 TLLGKTVFILGFG--NIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 150 ~l~~~tvGIiG~G--~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.+.|++|++||=+ ++.+..+..+..||++|....|.
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~ 190 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPK 190 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCc
Confidence 4889999999975 67888888999999999999874
No 465
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=84.95 E-value=1.2 Score=32.30 Aligned_cols=34 Identities=18% Similarity=0.410 Sum_probs=29.7
Q ss_pred CeEEEEe----cChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 154 KTVFILG----FGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 154 ~tvGIiG----~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
|++.||| -++.|..+.+.++..|.+|+.++++..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~ 38 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGG 38 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCS
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCce
Confidence 6899999 789999999999999999999998764
No 466
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=84.94 E-value=4.9 Score=36.27 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=30.6
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEc
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATK 183 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~ 183 (210)
..|.||++.|.+-+...-.+++.++.+||+|.+..
T Consensus 322 ~~L~Gkrv~i~~g~~~~~~l~~~l~elGmevv~~~ 356 (456)
T TIGR01283 322 ERLKGKKAAIYTGGVKSWSLVSALQDLGMEVVATG 356 (456)
T ss_pred HHcCCCEEEEEcCCchHHHHHHHHHHCCCEEEEEe
Confidence 56899999998877888899999999999998874
No 467
>PRK12937 short chain dehydrogenase; Provisional
Probab=84.90 E-value=1.5 Score=35.22 Aligned_cols=36 Identities=28% Similarity=0.404 Sum_probs=31.4
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.+.++++.|.| .|.||+.+|+.+..-|.+|+...++
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 36789999999 6999999999999999998877654
No 468
>PRK06370 mercuric reductase; Validated
Probab=84.86 E-value=1.2 Score=40.01 Aligned_cols=34 Identities=32% Similarity=0.566 Sum_probs=31.7
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++++.|||-|.+|-++|..++.+|.+|..+++..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 204 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP 204 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 6899999999999999999999999999998754
No 469
>PTZ00058 glutathione reductase; Provisional
Probab=84.84 E-value=1.1 Score=41.72 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=31.7
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+++|.|||-|.||-++|..++.+|.+|..+.+..
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 7899999999999999999999999999998754
No 470
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=84.83 E-value=1.4 Score=37.55 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=30.9
Q ss_pred ccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcCC
Q 028302 152 LGKTVFILGF-GNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 152 ~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.|.+|.|.|. |.+|+.+++.++.+|++|++.+++
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~ 211 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA 211 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc
Confidence 4799999998 999999999999999999887754
No 471
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=84.82 E-value=1.3 Score=33.99 Aligned_cols=35 Identities=17% Similarity=0.326 Sum_probs=31.8
Q ss_pred ccCeEEEEe--cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILG--FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG--~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.|+||+++| .+++...++..+..||+++....|..
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~ 37 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEG 37 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGG
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCc
Confidence 488999999 48999999999999999999998865
No 472
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.81 E-value=1.4 Score=35.98 Aligned_cols=37 Identities=38% Similarity=0.473 Sum_probs=32.9
Q ss_pred ccCeEEEEec--ChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302 152 LGKTVFILGF--GNIGVELAKRLRPFGVKIIATKRSWAS 188 (210)
Q Consensus 152 ~~~tvGIiG~--G~IG~~vA~~~~~fg~~V~~~~~~~~~ 188 (210)
..+.|.|.|+ |.||-++|+.+..-|+.|++..|+..+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~ 44 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEP 44 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccch
Confidence 3578999995 899999999999999999999998654
No 473
>PRK06116 glutathione reductase; Validated
Probab=84.80 E-value=1.3 Score=39.70 Aligned_cols=34 Identities=32% Similarity=0.327 Sum_probs=31.5
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+++|.|||-|.+|-++|..++.+|.+|..+.+..
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 200 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD 200 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 5899999999999999999999999999998754
No 474
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=84.70 E-value=1.2 Score=39.88 Aligned_cols=35 Identities=37% Similarity=0.565 Sum_probs=31.9
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.++++.|||-|.+|-++|..++.+|.+|..+.+..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 35899999999999999999999999999998754
No 475
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=84.67 E-value=1.3 Score=40.04 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=33.9
Q ss_pred ccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 150 TLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 150 ~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
....++|.|||.|..|-..|+.|+.-|.+|+.+.++..
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~ 44 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ 44 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 35578999999999999999999999999999998654
No 476
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=84.61 E-value=1.3 Score=39.78 Aligned_cols=34 Identities=26% Similarity=0.431 Sum_probs=31.2
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+++.|||-|.+|-++|..++.+|.+|..+++.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 205 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP 205 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 4799999999999999999999999999998754
No 477
>PLN02206 UDP-glucuronate decarboxylase
Probab=84.56 E-value=1.3 Score=39.93 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=32.9
Q ss_pred ccccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302 148 GETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 148 ~~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
+-.-++++|.|.| .|-||+.+++.|..-|.+|+++|+.
T Consensus 114 ~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~ 152 (442)
T PLN02206 114 GLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNF 152 (442)
T ss_pred ccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCC
Confidence 3344679999999 7999999999999999999999864
No 478
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.55 E-value=5 Score=34.19 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=36.7
Q ss_pred cccccccCeEEEEecCh-HHHHHHHHhccCCCEEEEEcCCCC
Q 028302 147 TGETLLGKTVFILGFGN-IGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 147 ~~~~l~~~tvGIiG~G~-IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
..++++|++|.|=|-|+ +|+++|.-+...|+++..||...+
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~ 73 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQ 73 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEecccc
Confidence 45899999999999876 899999999999999999997654
No 479
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=84.55 E-value=0.99 Score=39.98 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=32.8
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWAS 188 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~~ 188 (210)
...+|+||+|-.|+.+|.-...-|++|.+|+|+...
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~k 38 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEK 38 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHH
Confidence 457999999999999999999999999999998743
No 480
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.52 E-value=1.4 Score=35.53 Aligned_cols=35 Identities=34% Similarity=0.443 Sum_probs=29.7
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEE-EcCC
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIA-TKRS 185 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~-~~~~ 185 (210)
+.++++.|.| .|.||+.+++.+...|.+|+. .+|.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~ 38 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARS 38 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4678999999 689999999999999999876 3454
No 481
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=84.47 E-value=3.6 Score=36.90 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=35.1
Q ss_pred ccccccCeEEEEec----------ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 148 GETLLGKTVFILGF----------GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 148 ~~~l~~~tvGIiG~----------G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+..+.|++|+|+|+ .+=+..+++.|..-|.+|.+|||..
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v 357 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWV 357 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCC
Confidence 45689999999999 5778999999999999999999973
No 482
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=84.43 E-value=1.5 Score=39.01 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=33.9
Q ss_pred cccccCeEEEEec-----------------ChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGF-----------------GNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~-----------------G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.++.|+++.|-|- |.+|.++|+.+...|++|+++++..
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~ 238 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPV 238 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCc
Confidence 3588999999996 7899999999999999999998754
No 483
>PRK07846 mycothione reductase; Reviewed
Probab=84.39 E-value=1.3 Score=39.72 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=31.6
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+++.|||-|.||-++|..++.+|.+|..+.+..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~ 199 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG 199 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 5799999999999999999999999999998764
No 484
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.37 E-value=1.4 Score=37.44 Aligned_cols=36 Identities=36% Similarity=0.517 Sum_probs=32.6
Q ss_pred cccccCeEEEEecC---hHHHHHHHHhccCCCEEEEEcC
Q 028302 149 ETLLGKTVFILGFG---NIGVELAKRLRPFGVKIIATKR 184 (210)
Q Consensus 149 ~~l~~~tvGIiG~G---~IG~~vA~~~~~fg~~V~~~~~ 184 (210)
.++.||++.|-|-| .||+++|+.|..-|++|+..++
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~ 42 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTW 42 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEec
Confidence 56899999999996 9999999999999999998653
No 485
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.31 E-value=1.9 Score=36.45 Aligned_cols=54 Identities=13% Similarity=0.003 Sum_probs=42.9
Q ss_pred ccccccCeEEEEecC-hHHHHHHHHhccCCCEEEEEcCCCCC--CCcccCceeEEec
Q 028302 148 GETLLGKTVFILGFG-NIGVELAKRLRPFGVKIIATKRSWAS--HSQVSCQSSGMLG 201 (210)
Q Consensus 148 ~~~l~~~tvGIiG~G-~IG~~vA~~~~~fg~~V~~~~~~~~~--~~~~~~~~~~~~~ 201 (210)
+.++.||++.|||-| -+|+.+|.+|..-|++|..+....+. +...++|.++...
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~ADIvV~Av 208 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKKADIVIVGV 208 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEec
Confidence 468999999999998 78999999999889999987754332 2456677776654
No 486
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=84.31 E-value=1.2 Score=37.48 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=30.8
Q ss_pred cccCeEEEEec-ChHHHHHHHHhccCCCEEEEEcC
Q 028302 151 LLGKTVFILGF-GNIGVELAKRLRPFGVKIIATKR 184 (210)
Q Consensus 151 l~~~tvGIiG~-G~IG~~vA~~~~~fg~~V~~~~~ 184 (210)
-.|.+|.|+|. |.+|+.+++.+++.|.+|++.++
T Consensus 161 ~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~ 195 (325)
T cd08264 161 GPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR 195 (325)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH
Confidence 35899999997 99999999999999999988764
No 487
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.22 E-value=1.2 Score=40.84 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=33.2
Q ss_pred cccccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 149 ETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 149 ~~l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.....++|-|||.|--|-..||-|..||++|+.+.-+.
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence 34567799999999999999999999999999987543
No 488
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.18 E-value=1.4 Score=37.65 Aligned_cols=35 Identities=34% Similarity=0.454 Sum_probs=31.1
Q ss_pred ccCeEEEEecChHHHHHHHHhccCCCE-EEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLRPFGVK-IIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~~fg~~-V~~~~~~~ 186 (210)
.|++|.|.|.|.||+.+++.++.+|.+ |+..+++.
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~ 201 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRP 201 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 479999999999999999999999994 88887653
No 489
>PRK12747 short chain dehydrogenase; Provisional
Probab=84.14 E-value=1.6 Score=35.33 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=29.7
Q ss_pred cccCeEEEEe-cChHHHHHHHHhccCCCEEEEEc
Q 028302 151 LLGKTVFILG-FGNIGVELAKRLRPFGVKIIATK 183 (210)
Q Consensus 151 l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~ 183 (210)
+.+|++.|.| .|.||+++|+.+..-|++|+..+
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~ 35 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHY 35 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEc
Confidence 4689999999 78999999999999999998864
No 490
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=84.08 E-value=1.3 Score=39.83 Aligned_cols=34 Identities=38% Similarity=0.402 Sum_probs=31.4
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
++++.|||-|.||-++|..++.+|.+|..+.+..
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 199 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE 199 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 5899999999999999999999999999988754
No 491
>PRK07201 short chain dehydrogenase; Provisional
Probab=84.07 E-value=1.8 Score=40.38 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=33.7
Q ss_pred ccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 150 TLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 150 ~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.+.|+++.|.| .|.||+++++.+..-|++|+..+|+.
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~ 405 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNG 405 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 67899999999 58899999999999999999999864
No 492
>PLN02583 cinnamoyl-CoA reductase
Probab=84.03 E-value=1.5 Score=36.87 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=30.6
Q ss_pred ccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302 152 LGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 152 ~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
.+++|.|.| .|-||+.+++.|..-|.+|++..|+
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 468999999 6999999999999999999998774
No 493
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=84.02 E-value=1.3 Score=37.30 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=31.1
Q ss_pred cCeEEEEecChHHHHHHHHhccCCC-EEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGV-KIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~~ 186 (210)
++++.|+|.|..+++++-.|+..|+ +|..++|+.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 4689999999999999999999998 599999975
No 494
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=83.99 E-value=0.65 Score=40.18 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.4
Q ss_pred cCeEEEEecChHHHHHHHHhcc
Q 028302 153 GKTVFILGFGNIGVELAKRLRP 174 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~ 174 (210)
.-+|+|+|+|.+|+.+++.++.
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~ 24 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAE 24 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHH
Confidence 3579999999999999998875
No 495
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=83.94 E-value=1.3 Score=39.83 Aligned_cols=34 Identities=35% Similarity=0.518 Sum_probs=31.3
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
.++|.|||-|.+|-++|..++.+|.+|..+++..
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 5799999999999999999999999999998754
No 496
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=83.91 E-value=1.5 Score=37.16 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=30.7
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCC-EEEEEcCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGV-KIIATKRS 185 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~-~V~~~~~~ 185 (210)
..|++|.|.|.|.+|+.+++.++.+|+ +|++.++.
T Consensus 166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~ 201 (344)
T cd08284 166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPV 201 (344)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCC
Confidence 358999999999999999999999997 78887543
No 497
>PRK08618 ornithine cyclodeaminase; Validated
Probab=83.85 E-value=1.5 Score=37.68 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=28.6
Q ss_pred ccCeEEEEecChHHHHHHHHhc-cCCC-EEEEEcCCC
Q 028302 152 LGKTVFILGFGNIGVELAKRLR-PFGV-KIIATKRSW 186 (210)
Q Consensus 152 ~~~tvGIiG~G~IG~~vA~~~~-~fg~-~V~~~~~~~ 186 (210)
..++++|||.|.+|+..++.+. ..++ +|..|||++
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~ 162 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTF 162 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCH
Confidence 4789999999999998887654 5676 688899874
No 498
>PRK13984 putative oxidoreductase; Provisional
Probab=83.80 E-value=1.6 Score=40.73 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=33.5
Q ss_pred cccCeEEEEecChHHHHHHHHhccCCCEEEEEcCCCC
Q 028302 151 LLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWA 187 (210)
Q Consensus 151 l~~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~~ 187 (210)
-.+++|.|||.|..|...|..|+..|.+|..+++...
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~ 317 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK 317 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4689999999999999999999999999999987543
No 499
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=83.79 E-value=1.5 Score=39.57 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=31.1
Q ss_pred cCeEEEEecChHHHHHHHHhccCCCEEEEEcCCC
Q 028302 153 GKTVFILGFGNIGVELAKRLRPFGVKIIATKRSW 186 (210)
Q Consensus 153 ~~tvGIiG~G~IG~~vA~~~~~fg~~V~~~~~~~ 186 (210)
+++|.|||-|.||-++|..+..+|.+|..+++..
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 6899999999999999999999999999987643
No 500
>PRK09134 short chain dehydrogenase; Provisional
Probab=83.75 E-value=2 Score=34.95 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=31.9
Q ss_pred cccccCeEEEEe-cChHHHHHHHHhccCCCEEEEEcCC
Q 028302 149 ETLLGKTVFILG-FGNIGVELAKRLRPFGVKIIATKRS 185 (210)
Q Consensus 149 ~~l~~~tvGIiG-~G~IG~~vA~~~~~fg~~V~~~~~~ 185 (210)
....++++.|.| .|.||+.+++.+...|++|+..+++
T Consensus 5 ~~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~ 42 (258)
T PRK09134 5 SMAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNR 42 (258)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 456789999999 6899999999999999999887654
Done!